Query 021340
Match_columns 314
No_of_seqs 124 out of 511
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 16:13:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021340.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021340hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hx8_A Synapse-enriched clathr 100.0 7.7E-74 2.6E-78 532.8 31.0 278 6-301 4-298 (299)
2 3zym_A Phosphatidylinositol-bi 100.0 4E-69 1.4E-73 502.2 26.7 279 7-302 10-292 (310)
3 3zyl_A Phosphatidylinositol-bi 100.0 4.9E-66 1.7E-70 472.7 25.5 257 6-278 9-269 (271)
4 1eyh_A Epsin; superhelix of he 99.7 4.8E-16 1.6E-20 128.6 12.0 119 31-156 2-121 (144)
5 1inz_A EPS15-interacting porte 99.6 7.3E-16 2.5E-20 128.1 10.8 119 31-156 20-139 (148)
6 3onk_A Epsin-3, ENT3; helix, p 99.5 3E-13 1E-17 112.4 11.3 121 29-156 6-128 (150)
7 1xgw_A Epsin 4; ENTH, enthopro 99.5 8.4E-13 2.9E-17 112.3 13.6 120 30-156 30-151 (176)
8 1vdy_A Hypothetical protein (R 98.8 4.1E-08 1.4E-12 80.4 11.1 117 35-156 12-129 (140)
9 1elk_A Target of MYB1; superhe 96.3 0.022 7.5E-07 47.1 9.2 79 33-113 15-93 (157)
10 1juq_A ADP-ribosylation factor 96.2 0.017 5.9E-07 48.5 8.2 78 33-113 12-89 (171)
11 3rru_A TOM1L1 protein; structu 96.2 0.027 9.4E-07 46.4 9.2 79 33-113 15-93 (152)
12 3g2s_A C-terminal fragment of 96.2 0.035 1.2E-06 45.5 9.8 79 32-113 9-87 (149)
13 3ldz_A STAM-1, signal transduc 96.1 0.033 1.1E-06 45.2 9.4 78 33-113 4-81 (140)
14 1mhq_A ADP-ribosylation factor 95.7 0.044 1.5E-06 44.9 8.5 76 35-113 2-77 (148)
15 1x5b_A Signal transducing adap 95.7 0.047 1.6E-06 45.4 8.8 78 33-113 14-91 (163)
16 3zyq_A Hepatocyte growth facto 95.6 0.057 1.9E-06 47.3 9.5 79 32-113 6-84 (226)
17 1dvp_A HRS, hepatocyte growth 95.0 0.1 3.5E-06 45.3 9.2 77 34-113 5-81 (220)
18 3bej_E Nuclear receptor coacti 79.4 0.87 3E-05 25.2 1.4 13 96-108 13-25 (26)
19 2prg_C Nuclear receptor coacti 52.4 5.9 0.0002 28.8 1.6 12 97-108 67-78 (88)
20 3kz5_E Protein SOPB; partition 38.0 18 0.0006 23.7 2.0 23 285-307 30-52 (52)
21 1kq6_A NCF-1, P47PHOX, neutrop 33.9 47 0.0016 26.0 4.5 49 253-302 44-101 (141)
22 2g49_C Glucagon preproprotein; 26.5 36 0.0012 19.6 1.8 16 141-156 4-19 (29)
23 3lui_A Sorting nexin-17, SNX17 25.6 78 0.0027 23.7 4.2 40 253-301 40-88 (115)
24 1t5q_A Gastric inhibitory poly 24.6 46 0.0016 19.3 2.0 16 141-156 4-19 (30)
25 1h6h_A Neutrophil cytosol fact 23.5 1E+02 0.0035 23.9 4.7 49 253-302 58-115 (143)
26 2l73_A NADPH oxidase organizer 22.0 1.4E+02 0.0046 23.7 5.2 48 253-301 47-106 (149)
27 3iq2_A Sorting nexin-7; SNX7, 22.0 1.3E+02 0.0043 23.4 4.9 41 253-302 51-105 (138)
28 2i4k_A Sorting nexin-1, SNX1; 21.5 70 0.0024 24.1 3.3 14 288-301 90-107 (128)
29 1kmd_A VAM7P, vacuolar morphog 20.5 1E+02 0.0036 23.0 4.1 40 253-302 35-92 (117)
30 2rrh_A VIP peptides; peptide h 20.0 86 0.0029 17.9 2.6 15 141-155 4-18 (29)
No 1
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=100.00 E-value=7.7e-74 Score=532.83 Aligned_cols=278 Identities=24% Similarity=0.438 Sum_probs=241.9
Q ss_pred chhHHHHHHhhhh-cccchhhhhccCCCchHHHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhcc
Q 021340 6 TQKSFRKALGALK-DTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSK 84 (314)
Q Consensus 6 ~~~~~~~~~g~~k-d~~s~~~a~~~~~~~~l~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~~ 84 (314)
++++||+++|++| |+++ +++++||+|||+|+++|||+|||++||.+||+++ +++++++|+|.+| ..
T Consensus 4 ~~~~~~~~~~a~k~~~~~----------~~l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~--~~~~~~~~~L~~R-~~ 70 (299)
T 1hx8_A 4 AGQTINDRLLAARHSLAG----------QGLAKSVCKATTEECIGPKKKHLDYLVHCANEPN--VSIPHLANLLIER-SQ 70 (299)
T ss_dssp ----------------------------CHHHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTT--SCHHHHHHHHHHH-HT
T ss_pred chHHHHHHHHHHhhccch----------hHHHHHHHhccCCCCCCCCHHHHHHHHHHHcCCC--CCHHHHHHHHHhh-cc
Confidence 3689999999999 8877 5677899999999999999999999999999874 5789999999999 46
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCcchHHHHHHhhhcCCCcccccccCCCCC-----------CCCCchhHHHHHHHHHHHH
Q 021340 85 THNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSS-----------PNAWDYSAWVRSYALFLEE 153 (314)
Q Consensus 85 t~~w~v~~K~LillH~llr~G~~~~~~~~~~~~~~~~~~l~l~~f~d~s~-----------~~~~~~~~~Ir~Y~~yL~~ 153 (314)
++||+|+||+||++|+|||+|||+|.+++ ++++++|++++|+|.++ +.+|+||.|||+|++||++
T Consensus 71 ~~~w~va~K~LivlH~llreG~~~~~~~l----~~~~~~l~l~~f~D~~~~~~~~~~~~~~~~~~d~s~~Ir~Ya~yL~~ 146 (299)
T 1hx8_A 71 NANWVVVYKSLITTHHLMAYGNERFMQYL----ASSNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLNE 146 (299)
T ss_dssp CSSHHHHHHHHHHHHHHHHHSCHHHHHHH----HHTTCCCCCTTCCCCCC---CCSSCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhcCCHHHHHHH----HhCCcccchhhhhcccccccccccccccccccchhHHHHHHHHHHHH
Confidence 89999999999999999999999987665 34667999999998764 2457899999999999999
Q ss_pred HHHHhhhhccccccC-----CCCCCCCChHHHHhhHHHHHHHHHHHhcCccCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 021340 154 RLECFRVLKYDIETD-----RPRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAIS 228 (314)
Q Consensus 154 rl~~~~~~~~d~~~~-----~~~~~~l~~~~ll~~l~~lq~lid~ll~~~~~~~~~~n~~~~~al~lli~Ds~~lY~~~~ 228 (314)
|+.+|+..++|++.. .+++++++++++|+.++.+|+|||++++|+|.+.+.+|+|+++||++||+||++||+++|
T Consensus 147 r~~~f~~~~~d~~~~~~~~~~~~~~~l~~~~lL~~l~~lQ~li~~ll~~~~~~~~~~n~~~~~Al~llv~Ds~~lY~~i~ 226 (299)
T 1hx8_A 147 KSLSYRAMAFDFCKVKRGKEEGSLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYN 226 (299)
T ss_dssp HHHHHHHHSSCGGGC-----CCCTTTCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCccccccCccccchhhCCHHHHHHHHHHHHHHHHHHHCCCCCcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 988888888888642 367899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCccccCCCCCChhhHHHHHHHHHh
Q 021340 229 DGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKE 301 (314)
Q Consensus 229 ~~v~~lLe~~fem~~~da~~~l~iy~rf~~q~~~L~~Fy~~c~~l~~~~~~~iP~l~~~p~~~l~~Lee~l~~ 301 (314)
+||++|||+||+|+++||++||++|+||.+|+++|++||++|+++|+++ ++||+|+++||+|+++|||||++
T Consensus 227 ~gi~~lLe~~fem~~~d~~~al~iykrf~~q~~~L~~Fy~~c~~~~~~~-~~iP~L~~~p~~ll~~Lee~l~~ 298 (299)
T 1hx8_A 227 DGIINLLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDK-GDIPDLTKAPSSLLDALEQHLAT 298 (299)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCG-GGSCCCCCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcCC-CCCCCCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999966 89999999999999999999986
No 2
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=100.00 E-value=4e-69 Score=502.22 Aligned_cols=279 Identities=23% Similarity=0.428 Sum_probs=234.7
Q ss_pred hhHHHHHHhhhhcccchhhhhccCCCchHHHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhccCC
Q 021340 7 QKSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTH 86 (314)
Q Consensus 7 ~~~~~~~~g~~kd~~s~~~a~~~~~~~~l~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~~t~ 86 (314)
+++++.-+.+.|. .+.+ +++++||+|||+|+++|||+|||++|+.+||+++ .++++++|+|.+|++ ++
T Consensus 10 ~~~~~~~~~~~~~-------~~~~--s~l~~aV~KATs~~~~pPk~Khv~~il~~T~~~~--~~~~~i~~~L~~Rl~-~~ 77 (310)
T 3zym_A 10 GQSLTDRITAAQH-------SVTG--SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMN--VNIPQLADSLFERTT-NS 77 (310)
T ss_dssp --CHHHHHHHHHH-------CCHH--HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHCTT--SCHHHHHHHHHHHTT-SS
T ss_pred cccHHHHHHHHHh-------cccc--cHHHHHHHhcCcCCCCCCChhHHHHHHHHHccCC--CcHHHHHHHHHhhcC-CC
Confidence 4555655555554 2333 8999999999999999999999999999999874 478899999999998 89
Q ss_pred cHHHHHHHHHHHHHHHhcCCcchHHHHHHhhhcCCCcccccccCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhhccccc
Q 021340 87 NWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIE 166 (314)
Q Consensus 87 ~w~v~~K~LillH~llr~G~~~~~~~~~~~~~~~~~~l~l~~f~d~s~~~~~~~~~~Ir~Y~~yL~~rl~~~~~~~~d~~ 166 (314)
||+|+||+||++|+|||+|||+|.+ |+++++.+|++++|+|.+++.+|+|++|||.|++||++|+.+|+.++.|++
T Consensus 78 ~w~vv~KaLivlH~llreG~~~~l~----~~~~~~~~~~Ls~f~d~~~~~g~~~~~~Ir~Ya~yL~~Rl~~f~~~~~d~~ 153 (310)
T 3zym_A 78 SWVVVFKSLITTHHLMVYGNERFIQ----YLASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFT 153 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHH----HHHHCSCCCCCTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred chHHHHHHHHHHHHHHhcCCHHHHH----HHHhCCCeeecccccCCCCcCcccccHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 9999999999999999999998755 444466799999999987767899999999999999999999999999987
Q ss_pred cCC----CCCCCCChHHHHhhHHHHHHHHHHHhcCccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 021340 167 TDR----PRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQ 242 (314)
Q Consensus 167 ~~~----~~~~~l~~~~ll~~l~~lq~lid~ll~~~~~~~~~~n~~~~~al~lli~Ds~~lY~~~~~~v~~lLe~~fem~ 242 (314)
..+ .++++++++++|+.++.+|+|||++++|+|.+.+.+|+|+++||.+||+||++||+++|+||++|||+||+|+
T Consensus 154 ~~~~~~~~~~r~~~~~~Ll~~l~~lQ~lid~ll~~~~~~~~~~N~l~~~A~~llv~ds~~lY~~inegii~lLe~ffem~ 233 (310)
T 3zym_A 154 KVKRGADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMK 233 (310)
T ss_dssp TSCCSTTSHHHHCCHHHHHHHHHHHHHHHHHHHTSCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred cccCCCCCccccCCHHHHHHHHHHHHHHHHHHHcCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 542 4567789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCccccCCCCCChhhHHHHHHHHHhC
Q 021340 243 RHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEA 302 (314)
Q Consensus 243 ~~da~~~l~iy~rf~~q~~~L~~Fy~~c~~l~~~~~~~iP~l~~~p~~~l~~Lee~l~~~ 302 (314)
+.||++||+||+||.+|+++|.+||++||++|+.+ .+||+|+++|++.++.+|.-+.+.
T Consensus 234 ~~da~~al~iykrf~~Q~e~L~~Fy~~ck~l~l~~-~~iP~L~~~p~d~l~~lq~~i~ev 292 (310)
T 3zym_A 234 KNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDR-GDISGSGSGHMDRVRNLQSEVEGV 292 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCCCCCCcccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999655 599999999999999999887754
No 3
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=100.00 E-value=4.9e-66 Score=472.75 Aligned_cols=257 Identities=25% Similarity=0.465 Sum_probs=231.8
Q ss_pred chhHHHHHHhhhhcccchhhhhccCCCchHHHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhccC
Q 021340 6 TQKSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKT 85 (314)
Q Consensus 6 ~~~~~~~~~g~~kd~~s~~~a~~~~~~~~l~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~~t 85 (314)
++++++.-+.+.|. .+.+ +++++||+|||+|+++|||+|||++|+.+||+++ .++.+++++|.+|++ +
T Consensus 9 ~~~~~~~~~~~~~~-------~~~~--s~l~~aV~KATs~~~~~Pk~Khv~~il~~T~~~~--~~~~~~~~~L~~Rl~-~ 76 (271)
T 3zyl_A 9 SGQSLTDRITAAQH-------SVTG--SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMN--VNIPQLADSLFERTT-N 76 (271)
T ss_dssp ---CHHHHHHHHHH-------HHHH--HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHSTT--SCHHHHHHHHHHHTT-S
T ss_pred ccccHHHHHHHHHh-------cccc--hHHHHHHHhcCCCCCCCCCHHHHHHHHHHHccCC--CcHHHHHHHHHHHhC-C
Confidence 35666666666665 2333 8999999999999999999999999999999874 478899999999998 8
Q ss_pred CcHHHHHHHHHHHHHHHhcCCcchHHHHHHhhhcCCCcccccccCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhhcccc
Q 021340 86 HNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDI 165 (314)
Q Consensus 86 ~~w~v~~K~LillH~llr~G~~~~~~~~~~~~~~~~~~l~l~~f~d~s~~~~~~~~~~Ir~Y~~yL~~rl~~~~~~~~d~ 165 (314)
+||+|+||+||++|+|||+|||+|.++ +++++++|++++|+|.+++.+|||++|||.|++||++|+.+|+.++.|+
T Consensus 77 ~~w~v~~KaLivlH~llreG~~~~l~~----~~~~~~~~~Ls~f~d~~~~~~~~~s~~Ir~Ya~yL~eRl~~f~~~~~d~ 152 (271)
T 3zyl_A 77 SSWVVVFKSLITTHHLMVYGNERFIQY----LASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDF 152 (271)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCHHHHHH----HHHCSCCCCCTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCT
T ss_pred CchHHHHHHHHHHHHHHhcCCHHHHHH----HHhCCCeechhccCCCCCCCcccccHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999987654 4446679999999998777789999999999999999999999999998
Q ss_pred ccCC----CCCCCCChHHHHhhHHHHHHHHHHHhcCccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021340 166 ETDR----PRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEM 241 (314)
Q Consensus 166 ~~~~----~~~~~l~~~~ll~~l~~lq~lid~ll~~~~~~~~~~n~~~~~al~lli~Ds~~lY~~~~~~v~~lLe~~fem 241 (314)
+..+ .++++++++++|+.++.+|+|||++++|+|.+.+++|+|+++||.|||+||++||+.+|+||++|||+||||
T Consensus 153 ~~~k~~~~~~~r~~~~~~Ll~~l~~lQ~lld~ll~~~~~~~~~~N~li~~A~~lLv~es~~lY~~in~gii~lLe~ffem 232 (271)
T 3zyl_A 153 TKVKRGADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDM 232 (271)
T ss_dssp TTSCCSTTSHHHHCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGS
T ss_pred cccCCCCCCccccCCHHHHHHHHHHHHHHHHHHHccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7643 456788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCC
Q 021340 242 QRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRG 278 (314)
Q Consensus 242 ~~~da~~~l~iy~rf~~q~~~L~~Fy~~c~~l~~~~~ 278 (314)
+++||++||+||+||.+|+++|.+||++||++|+.++
T Consensus 233 ~~~da~~aleiykrf~~Q~~~L~~Fy~~ck~~gi~~~ 269 (271)
T 3zyl_A 233 KKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDRG 269 (271)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGG
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCcC
Confidence 9999999999999999999999999999999999765
No 4
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=99.67 E-value=4.8e-16 Score=128.63 Aligned_cols=119 Identities=15% Similarity=0.175 Sum_probs=98.2
Q ss_pred CCchHHHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhcc-CCcHHHHHHHHHHHHHHHhcCCcch
Q 021340 31 DYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSK-THNWAVALKTLIVIHRALREVDPTF 109 (314)
Q Consensus 31 ~~~~l~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~~-t~~w~v~~K~LillH~llr~G~~~~ 109 (314)
++++.|+.|..||++|+++|+.+++..|...|++. .++..++..|.+||.. .++|.+++|+|+|+|.|++.|++.|
T Consensus 2 ~ys~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~---~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse~v 78 (144)
T 1eyh_A 2 NYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNV---VAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERV 78 (144)
T ss_dssp CCCHHHHHHHHHTCSSSSCCCHHHHHHHHHHTTSH---HHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHH
T ss_pred CCCHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCH---hhHHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCHHH
Confidence 57899999999999999999999999999999975 4788899999999974 3699999999999999999999998
Q ss_pred HHHHHHhhhcCCCcccccccCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 021340 110 HEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLE 156 (314)
Q Consensus 110 ~~~~~~~~~~~~~~l~l~~f~d~s~~~~~~~~~~Ir~Y~~yL~~rl~ 156 (314)
..++...+. .+..|..|.-.. ..+.+.|..||.+|++|.+-+.
T Consensus 79 v~~~~~~~~---~i~~L~~F~y~d-~~g~D~G~~VR~kak~l~~Ll~ 121 (144)
T 1eyh_A 79 SQQCKENMY---AVQTLKDFQYVD-RDGKDQGVNVREKAKQLVALLR 121 (144)
T ss_dssp HHHHHHTHH---HHHGGGGCCCBC-TTSCBCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhH---HHhhhccceeeC-CCccchHHHHHHHHHHHHHHHC
Confidence 776543322 356677764211 2467899999999999966544
No 5
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=99.64 E-value=7.3e-16 Score=128.06 Aligned_cols=119 Identities=15% Similarity=0.175 Sum_probs=98.8
Q ss_pred CCchHHHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhcc-CCcHHHHHHHHHHHHHHHhcCCcch
Q 021340 31 DYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSK-THNWAVALKTLIVIHRALREVDPTF 109 (314)
Q Consensus 31 ~~~~l~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~~-t~~w~v~~K~LillH~llr~G~~~~ 109 (314)
++++.|+.|..||++|+++|+.+++..|...|++. .++..++..|.+||.. .++|.+++|+|+++|.|++.|++.|
T Consensus 20 ~~s~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~---~~~~eIm~~l~kRL~d~~k~WR~vyKaL~lleyLl~nGse~v 96 (148)
T 1inz_A 20 NYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNV---VAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERV 96 (148)
T ss_dssp SCCCHHHHHHHHSCCCSCCCCSCHHHHHHHHHTSS---HHHHHHHHHHHHGGGCCSSCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCH---hhHHHHHHHHHHHHccCCcchhHhhHHHHHHHHHHHhCCHHH
Confidence 57999999999999999999999999999999985 4788899999999974 3799999999999999999999998
Q ss_pred HHHHHHhhhcCCCcccccccCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 021340 110 HEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLE 156 (314)
Q Consensus 110 ~~~~~~~~~~~~~~l~l~~f~d~s~~~~~~~~~~Ir~Y~~yL~~rl~ 156 (314)
..++..... .+..|..|.--. ..+.|.|..||.||++|.+-+.
T Consensus 97 v~~~r~~~~---~I~~L~~F~y~d-~~g~D~G~nVR~kAk~l~~LL~ 139 (148)
T 1inz_A 97 SQQCKENMY---AVQTLKDFQYVD-RDGKDQGVNVREKAKQLVALLR 139 (148)
T ss_dssp HHHHHHTHH---HHHHHHHCCCCC-SSCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhHH---HHHhhcceeeeC-CCCcCchHHHHHHHHHHHHHhC
Confidence 776543322 355666653211 3457889999999999988765
No 6
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=99.47 E-value=3e-13 Score=112.38 Aligned_cols=121 Identities=16% Similarity=0.190 Sum_probs=95.5
Q ss_pred cCCCchHHHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhcc--CCcHHHHHHHHHHHHHHHhcCC
Q 021340 29 NSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSK--THNWAVALKTLIVIHRALREVD 106 (314)
Q Consensus 29 ~~~~~~l~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~~--t~~w~v~~K~LillH~llr~G~ 106 (314)
.-++++.|+.|..||+.|+++|..+++.+|...|++. .++..++..|.+||.. .++|.+++|||++++.|++.|+
T Consensus 6 v~~ys~~E~kVreAT~nd~wGp~~~~m~eIa~~T~~~---~~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nGs 82 (150)
T 3onk_A 6 DPNYTEMEGKVREATNNEPWGASSTLMDQISQGTYNF---REREEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHGS 82 (150)
T ss_dssp --CCCHHHHHHHHHTSSCSSCCCHHHHHHHHHHTTSH---HHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHSC
T ss_pred hcCCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCH---HHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhCC
Confidence 3468999999999999999999999999999999975 3678899999999974 2589999999999999999999
Q ss_pred cchHHHHHHhhhcCCCcccccccCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 021340 107 PTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLE 156 (314)
Q Consensus 107 ~~~~~~~~~~~~~~~~~l~l~~f~d~s~~~~~~~~~~Ir~Y~~yL~~rl~ 156 (314)
+.|..++..++. .+-.|.+|.-.. ..+.+.|..||..|+.|.+-+.
T Consensus 83 e~vv~~~r~~~~---~i~~L~~F~~~d-~~G~D~G~~VR~kak~l~~LL~ 128 (150)
T 3onk_A 83 ERFIDDTRNSIN---LIRILETFHYID-SQGRDQGINVRTRVKALIELLS 128 (150)
T ss_dssp HHHHHHHHTTHH---HHHGGGGCCCBC-TTSCBCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH---HHHhhhcccccC-CCCCchHHHHHHHHHHHHHHHc
Confidence 988777533322 122355554211 2357889999999999965443
No 7
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=99.46 E-value=8.4e-13 Score=112.33 Aligned_cols=120 Identities=13% Similarity=0.146 Sum_probs=96.6
Q ss_pred CCCchHHHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHh-c-cCCcHHHHHHHHHHHHHHHhcCCc
Q 021340 30 SDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRL-S-KTHNWAVALKTLIVIHRALREVDP 107 (314)
Q Consensus 30 ~~~~~l~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl-~-~t~~w~v~~K~LillH~llr~G~~ 107 (314)
.++++.|+.|..||+.|+++|..+++.+|...|++. .++..++..|.+|+ . ..++|.+++|+|+|++.||+.|++
T Consensus 30 ~~ys~~E~kVreATnnd~wGPs~~~m~eIa~~T~~~---~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~LLeYLl~nGse 106 (176)
T 1xgw_A 30 MNYSEIESKVREATNDDPWGPSGQLMGEIAKATFMY---EQFPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRNGSE 106 (176)
T ss_dssp CCCCHHHHHHHHHTCSCSSCCCHHHHHHHHHHTTCT---TTHHHHHHHHHHHHHSSCTTCHHHHHHHHHHHHHHHHHSCH
T ss_pred cCCCHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhCCH
Confidence 367999999999999999999999999999999986 47899999999996 4 358999999999999999999999
Q ss_pred chHHHHHHhhhcCCCcccccccCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 021340 108 TFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLE 156 (314)
Q Consensus 108 ~~~~~~~~~~~~~~~~l~l~~f~d~s~~~~~~~~~~Ir~Y~~yL~~rl~ 156 (314)
.|.+++..++. .+-.|.+|.-- +..+.|.|..||..|+.|.+-+.
T Consensus 107 ~vv~~~r~~i~---~I~~L~~F~y~-D~~G~D~G~~VR~kAk~i~~LL~ 151 (176)
T 1xgw_A 107 RVVTSAREHIY---DLRSLENYHFV-DEHGKDQGINIRQKVKELVEFAQ 151 (176)
T ss_dssp HHHHHHHHTHH---HHHGGGGCCCB-CTTSCBCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHH---HHHhhccCeeE-CCCCCChHHHHHHHHHHHHHHHC
Confidence 88777633322 12235556421 12457899999999999966443
No 8
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=98.80 E-value=4.1e-08 Score=80.38 Aligned_cols=117 Identities=18% Similarity=0.147 Sum_probs=93.0
Q ss_pred HHHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcCCcchHHHHH
Q 021340 35 LDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVI 114 (314)
Q Consensus 35 l~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~~t~~w~v~~K~LillH~llr~G~~~~~~~~~ 114 (314)
-+..|.+||+.+++||----+.+|...|+.+.. ..+.+++..|.+||.. ++|.|.+|+|-+|-.|++.|++.|..++.
T Consensus 12 ~~~~V~~ATs~d~~~~pgylm~EIA~~T~~s~~-~~~~eim~~L~kRL~~-k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r 89 (140)
T 1vdy_A 12 RSRMIDAVTSDEDKVAPVYKLEEICDLLRSSHV-SIVKEFSEFILKRLDN-KSPIVKQKALRLIKYAVGKSGSEFRREMQ 89 (140)
T ss_dssp HHHHHHHTTCSCSSCCCHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHTS-SSHHHHHHHHHHHHHHTTTSCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcch-hHHHHHHHHHHHHhcC-CCcceeehHHHHHHHHHHhCCHHHHHHHH
Confidence 356799999999999999999999999988632 1246789999999974 78999999999999999999999987765
Q ss_pred HhhhcCCCcccccccCCCCCC-CCCchhHHHHHHHHHHHHHHH
Q 021340 115 NYGRSRSHMLNMAHFKDDSSP-NAWDYSAWVRSYALFLEERLE 156 (314)
Q Consensus 115 ~~~~~~~~~l~l~~f~d~s~~-~~~~~~~~Ir~Y~~yL~~rl~ 156 (314)
++.. .+-.+.+|.....+ .+.+.+..||.-|+=|.+-+.
T Consensus 90 ~~~~---~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 90 RNSV---AVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HTTH---HHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HhHH---HHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 4432 24556677754333 467889999999998877543
No 9
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=96.27 E-value=0.022 Score=47.15 Aligned_cols=79 Identities=19% Similarity=0.214 Sum_probs=66.4
Q ss_pred chHHHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcCCcchHHH
Q 021340 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (314)
Q Consensus 33 ~~l~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~~t~~w~v~~K~LillH~llr~G~~~~~~~ 112 (314)
+.++..|.|||+....-|+--.+-.|........ .+...++.+|.+|+...+|..|++-+|.++.-++..+.+.|..+
T Consensus 15 s~~~~~IekATs~~l~~~Dw~~~leicD~I~~~~--~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~e 92 (157)
T 1elk_A 15 SPVGQRIEKATDGSLQSEDWALNMEICDIINETE--EGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVL 92 (157)
T ss_dssp SHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSS--SHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred cHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCC--ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 3789999999999988888888888777766542 36688999999999745799999999999999999998888655
Q ss_pred H
Q 021340 113 V 113 (314)
Q Consensus 113 ~ 113 (314)
+
T Consensus 93 v 93 (157)
T 1elk_A 93 V 93 (157)
T ss_dssp H
T ss_pred H
Confidence 4
No 10
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=96.18 E-value=0.017 Score=48.49 Aligned_cols=78 Identities=23% Similarity=0.285 Sum_probs=66.6
Q ss_pred chHHHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcCCcchHHH
Q 021340 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (314)
Q Consensus 33 ~~l~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~~t~~w~v~~K~LillH~llr~G~~~~~~~ 112 (314)
+.++..|.|||+....-|+--.+-.|........ .+...++++|.+|+. .+|..|++-+|.++.-|+..+.+.|..+
T Consensus 12 s~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~--~~~k~A~ral~krl~-~~n~~vql~AL~LLd~~vkNCG~~Fh~e 88 (171)
T 1juq_A 12 ESLESWLNKATNPSNRQEDWEYIIGFCDQINKEL--EGPQIAVRLLAHKIQ-SPQEWEALQALTVLEACMKNCGRRFHNE 88 (171)
T ss_dssp CCHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHST--THHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred CcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCC--ccHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 6789999999999998899998888888876652 356789999999997 5899999999999999999987777555
Q ss_pred H
Q 021340 113 V 113 (314)
Q Consensus 113 ~ 113 (314)
+
T Consensus 89 v 89 (171)
T 1juq_A 89 V 89 (171)
T ss_dssp H
T ss_pred H
Confidence 4
No 11
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=96.17 E-value=0.027 Score=46.36 Aligned_cols=79 Identities=23% Similarity=0.227 Sum_probs=67.0
Q ss_pred chHHHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcCCcchHHH
Q 021340 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (314)
Q Consensus 33 ~~l~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~~t~~w~v~~K~LillH~llr~G~~~~~~~ 112 (314)
+.++..|.|||+.....|+--.+-.|........ .+...++.+|.+|+....|..+++-+|.++.-++..+.+.|..+
T Consensus 15 t~~~~~IekATs~~l~~~Dw~~ileicD~In~~~--~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~e 92 (152)
T 3rru_A 15 TSVGHLIEKATFAGVQTEDWGQFMHICDIINTTQ--DGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSL 92 (152)
T ss_dssp SHHHHHHHHHTCSSCCSCCHHHHHHHHHHHHHST--THHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ChHHHHHHHHcCCCCCCccHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 6789999999999998899888888777766542 35688999999999755688888999999999999999888766
Q ss_pred H
Q 021340 113 V 113 (314)
Q Consensus 113 ~ 113 (314)
+
T Consensus 93 i 93 (152)
T 3rru_A 93 I 93 (152)
T ss_dssp H
T ss_pred H
Confidence 5
No 12
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=96.16 E-value=0.035 Score=45.53 Aligned_cols=79 Identities=19% Similarity=0.283 Sum_probs=68.5
Q ss_pred CchHHHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcCCcchHH
Q 021340 32 YKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHE 111 (314)
Q Consensus 32 ~~~l~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~~t~~w~v~~K~LillH~llr~G~~~~~~ 111 (314)
.+.++..|.|||+.....|+--.+-.|........ .+...++++|.+|+. .+|..|++-+|.++.-++..+.+.|..
T Consensus 9 ~~~~~~~IekATs~~l~~~dw~~ileicD~I~~~~--~~pk~a~ral~krl~-~~n~~v~l~AL~LLe~cvkNCG~~fh~ 85 (149)
T 3g2s_A 9 PETLEARINRATNPLNKELDWASINGFCEQLNEDF--EGPPLATRLLAHKIQ-SPQEWEAIQALTVLETCMKSCGKRFHD 85 (149)
T ss_dssp CCCHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSS--SHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCC--CcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 47899999999999999999999988888877653 456889999999997 689999999999999999999988865
Q ss_pred HH
Q 021340 112 EV 113 (314)
Q Consensus 112 ~~ 113 (314)
++
T Consensus 86 ei 87 (149)
T 3g2s_A 86 EV 87 (149)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 13
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=96.11 E-value=0.033 Score=45.17 Aligned_cols=78 Identities=19% Similarity=0.346 Sum_probs=66.6
Q ss_pred chHHHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcCCcchHHH
Q 021340 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (314)
Q Consensus 33 ~~l~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~~t~~w~v~~K~LillH~llr~G~~~~~~~ 112 (314)
+.++..|.|||+.....|+--.+-.|........ .+...++.+|.+|+. .+|..+++-+|.++.-++..+.+.|..+
T Consensus 4 ~p~d~~iekAT~~~l~~~dw~~ileicD~I~~~~--~~~k~a~rai~Krl~-~~n~~~ql~AL~LLe~~vkNcG~~f~~e 80 (140)
T 3ldz_A 4 NPFDQDVEKATSEMNTAEDWGLILDICDKVGQSR--TGPKDCLRSIMRRVN-HKDPHVAMQALTLLGACVSNCGKIFHLE 80 (140)
T ss_dssp CTTHHHHHHHTCTTSSSCCHHHHHHHHHHHTTST--THHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCC--cCHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 5678999999999999999999988888877652 456889999999997 4789999999999999999998887655
Q ss_pred H
Q 021340 113 V 113 (314)
Q Consensus 113 ~ 113 (314)
+
T Consensus 81 v 81 (140)
T 3ldz_A 81 V 81 (140)
T ss_dssp H
T ss_pred H
Confidence 4
No 14
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=95.71 E-value=0.044 Score=44.88 Aligned_cols=76 Identities=20% Similarity=0.231 Sum_probs=64.4
Q ss_pred HHHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcCCcchHHHH
Q 021340 35 LDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEV 113 (314)
Q Consensus 35 l~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~~t~~w~v~~K~LillH~llr~G~~~~~~~~ 113 (314)
++..|.|||+....-|+--.+-.|........ .+...++.+|.+|+. .+|..|++-+|.++.-++..+.+.|..++
T Consensus 2 ~~~~iekATs~~l~~~dw~~~leicD~I~~~~--~~~k~a~rai~krl~-~~n~~vql~AL~LLe~~vkNCG~~fh~ev 77 (148)
T 1mhq_A 2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDP--NGPTHAPWLLAHKIQ-SPQEKEALYALTVLEMCMNHCGEKFHSEV 77 (148)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSS--HHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCC--ccHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 57789999999988899988888887776542 356789999999996 68999999999999999999888886554
No 15
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=95.70 E-value=0.047 Score=45.45 Aligned_cols=78 Identities=23% Similarity=0.328 Sum_probs=65.5
Q ss_pred chHHHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcCCcchHHH
Q 021340 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (314)
Q Consensus 33 ~~l~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~~t~~w~v~~K~LillH~llr~G~~~~~~~ 112 (314)
..++..|.|||+....-|+--.+-.|........ .+...++.+|.+|+. .+|..|++-+|.++.-|+..+.+.|..+
T Consensus 14 ~p~~~~IekATs~~~~~~Dw~~~leicD~I~~~~--~~~keA~ral~krl~-~~n~~vql~AL~LLd~~vkNcG~~Fh~e 90 (163)
T 1x5b_A 14 NPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTP--NGAKDCLKAIMKRVN-HKVPHVALQALTLLGACVANCGKIFHLE 90 (163)
T ss_dssp CTTHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSS--SHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ChHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4678999999999988899988888887776542 456889999999997 5788999999999999999988877655
Q ss_pred H
Q 021340 113 V 113 (314)
Q Consensus 113 ~ 113 (314)
+
T Consensus 91 v 91 (163)
T 1x5b_A 91 V 91 (163)
T ss_dssp H
T ss_pred H
Confidence 4
No 16
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=95.64 E-value=0.057 Score=47.31 Aligned_cols=79 Identities=22% Similarity=0.296 Sum_probs=66.8
Q ss_pred CchHHHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcCCcchHH
Q 021340 32 YKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHE 111 (314)
Q Consensus 32 ~~~l~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~~t~~w~v~~K~LillH~llr~G~~~~~~ 111 (314)
.+.++..|.|||+.....|+--.+-+|........ .+....+.+|.+|+. .+|..|++-+|.++.-++..+.+.|..
T Consensus 6 ~~~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~--~~~k~a~ral~krl~-~~n~~v~l~aL~LLe~~vkNcG~~f~~ 82 (226)
T 3zyq_A 6 SGTFERLLDKATSQLLLETDWESILQICDLIRQGD--TQAKYAVNSIKKKVN-DKNPHVALYALEVMESVVKNCGQTVHD 82 (226)
T ss_dssp -CHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTS--SCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcchHHHH
Confidence 36889999999999999999998888887776542 356889999999997 689999999999999999998877755
Q ss_pred HH
Q 021340 112 EV 113 (314)
Q Consensus 112 ~~ 113 (314)
++
T Consensus 83 ei 84 (226)
T 3zyq_A 83 EV 84 (226)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 17
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=95.04 E-value=0.1 Score=45.34 Aligned_cols=77 Identities=18% Similarity=0.242 Sum_probs=64.9
Q ss_pred hHHHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcCCcchHHHH
Q 021340 34 ELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEV 113 (314)
Q Consensus 34 ~l~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~~t~~w~v~~K~LillH~llr~G~~~~~~~~ 113 (314)
.++..|.|||+.....|+-..+-+|........ .+....+.+|.+|+. .+|..|++-+|.++.-++..+.+.|..++
T Consensus 5 ~~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~--~~~k~a~r~l~krl~-~~n~~~~l~aL~Lle~~vkNcG~~f~~ev 81 (220)
T 1dvp_A 5 SFCKNLENATSHLRLEPDWPSILLICDEINQKD--VTPKNAFAAIKKKMN-SPNPHSSCYSLLVLESIVKNCGAPVHEEV 81 (220)
T ss_dssp HHHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTS--SCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCC--cCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 378999999999988899988888888876542 366889999999997 58999999999999999999877675443
No 18
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=79.44 E-value=0.87 Score=25.18 Aligned_cols=13 Identities=38% Similarity=0.736 Sum_probs=10.6
Q ss_pred HHHHHHHhcCCcc
Q 021340 96 IVIHRALREVDPT 108 (314)
Q Consensus 96 illH~llr~G~~~ 108 (314)
-++|+||++|+|.
T Consensus 13 kILHrLLQ~~sP~ 25 (26)
T 3bej_E 13 KILHRLLQEGSPS 25 (26)
T ss_pred HHHHHHHHcCCCC
Confidence 3689999999774
No 19
>2prg_C Nuclear receptor coactivator SRC-1, peroxisome proliferator activated receptor gamma; complex (thiazolidinedione/receptor), ligand-binding domain; HET: BRL; 2.30A {Homo sapiens} SCOP: j.112.1.1
Probab=52.39 E-value=5.9 Score=28.81 Aligned_cols=12 Identities=42% Similarity=0.855 Sum_probs=10.5
Q ss_pred HHHHHHhcCCcc
Q 021340 97 VIHRALREVDPT 108 (314)
Q Consensus 97 llH~llr~G~~~ 108 (314)
+||||||+|.|.
T Consensus 67 ILHrLLQ~gSP~ 78 (88)
T 2prg_C 67 ILHRLLQEGSPS 78 (88)
T ss_dssp HHHHHHHSSCCC
T ss_pred HHHHHHhcCChH
Confidence 689999999875
No 20
>3kz5_E Protein SOPB; partition, segregation, F plasmid, DNA-binding protein, DNA- DNA binding protein; 1.58A {Escherichia coli}
Probab=37.99 E-value=18 Score=23.71 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=16.9
Q ss_pred CCCChhhHHHHHHHHHhCCCCCC
Q 021340 285 EQPPASFLQAMEEYVKEAPRGST 307 (314)
Q Consensus 285 ~~~p~~~l~~Lee~l~~~~~~~~ 307 (314)
..+|+++++.+|..|++..+.+|
T Consensus 30 ~~iP~~~IeKIE~lL~e~~k~~~ 52 (52)
T 3kz5_E 30 SRVPTECIEKIEAILKELEKPAP 52 (52)
T ss_dssp TTSCHHHHHHHHHHHHHHC----
T ss_pred ccCCHHHHHHHHHHHHHHhhcCC
Confidence 38999999999999998776654
No 21
>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A
Probab=33.94 E-value=47 Score=25.96 Aligned_cols=49 Identities=10% Similarity=0.236 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHhc-CCCcCCccccCCCCCC----hhhHH----HHHHHHHhC
Q 021340 253 YRRAGQQAERLSEFYEVCKS-LDIGRGERFIKIEQPP----ASFLQ----AMEEYVKEA 302 (314)
Q Consensus 253 y~rf~~q~~~L~~Fy~~c~~-l~~~~~~~iP~l~~~p----~~~l~----~Lee~l~~~ 302 (314)
|.-|...+.+|.+.|-.... ++- ....+|.||.-. +++++ .||+||+.-
T Consensus 44 YsdF~~Lh~~L~~~fp~~~g~~~~-~~~~lP~lP~K~~~~~~~~~e~Rr~~Le~YL~~L 101 (141)
T 1kq6_A 44 FTEIYEFHKTLKEMFPIEAGAINP-ENRIIPHLPAPKWFDGQRAAENRQGTLTEYCSTL 101 (141)
T ss_dssp HHHHHHHHHHHHHHCTTTTTSSCG-GGCCSCCCCCCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCchhhcccCc-cccccCCCCCccccCCHHHHHHHHHHHHHHHHHH
Confidence 66677788888876643211 110 112456665543 45665 799999863
No 22
>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A
Probab=26.49 E-value=36 Score=19.56 Aligned_cols=16 Identities=19% Similarity=0.547 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHH
Q 021340 141 SAWVRSYALFLEERLE 156 (314)
Q Consensus 141 ~~~Ir~Y~~yL~~rl~ 156 (314)
|.|..-|.+||+++..
T Consensus 4 GtFTsdysk~l~~~aa 19 (29)
T 2g49_C 4 GTFTSDYSKYLDSRRA 19 (29)
T ss_pred ccchHHHHHHHHHHHH
Confidence 4678899999988753
No 23
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A
Probab=25.59 E-value=78 Score=23.72 Aligned_cols=40 Identities=15% Similarity=0.255 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCccccCCCCC-----ChhhHH----HHHHHHHh
Q 021340 253 YRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQP-----PASFLQ----AMEEYVKE 301 (314)
Q Consensus 253 y~rf~~q~~~L~~Fy~~c~~l~~~~~~~iP~l~~~-----p~~~l~----~Lee~l~~ 301 (314)
|.-|...+++|.+-|.. ..+|.||+- .+++++ .||.||+.
T Consensus 40 YsdF~~L~~~L~~~~~~---------~~~P~lP~K~~~~~~~~~ie~Rr~~Le~yL~~ 88 (115)
T 3lui_A 40 YSQLLGLHEQLRKEYGA---------NVLPAFPPKKLFSLTPAEVEQRREQLEKYMQA 88 (115)
T ss_dssp HHHHHHHHHHHHHHHCS---------TTSCCCCCCCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC---------CcCCCCCCCcccCCCHHHHHHHHHHHHHHHHH
Confidence 56667777777765542 135655543 456676 68999874
No 24
>1t5q_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=24.63 E-value=46 Score=19.26 Aligned_cols=16 Identities=6% Similarity=0.449 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHH
Q 021340 141 SAWVRSYALFLEERLE 156 (314)
Q Consensus 141 ~~~Ir~Y~~yL~~rl~ 156 (314)
|.|..-|.+||+++..
T Consensus 4 gtFTsdySk~l~~~~a 19 (30)
T 1t5q_A 4 GTFISDYSIAMDKIHQ 19 (30)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHH
Confidence 4678899999998754
No 25
>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1
Probab=23.51 E-value=1e+02 Score=23.90 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCccccCCCCCC-----hhhHH----HHHHHHHhC
Q 021340 253 YRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPP-----ASFLQ----AMEEYVKEA 302 (314)
Q Consensus 253 y~rf~~q~~~L~~Fy~~c~~l~~~~~~~iP~l~~~p-----~~~l~----~Lee~l~~~ 302 (314)
|.-|...+.+|.+.|-.-..+. .....+|.||.-. +++++ .||.||+..
T Consensus 58 YsdF~~Lh~~L~~~~p~~~~~~-~~~~~lP~lP~K~~~~~~~~~ie~Rr~~Le~yL~~l 115 (143)
T 1h6h_A 58 YRQFHALQSKLEERFGPDSKSS-ALACTLPTLPAKVYVGVKQEIAEMRIPALNAYMKSL 115 (143)
T ss_dssp HHHHHHHHHHHHHHHSTTCSCG-GGCCCCCCCCCCCCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCccccccC-CCCCCcccCCCCcccCcCHHHHHHHHHHHHHHHHHH
Confidence 6667778888888765322111 0112467666443 45666 799999854
No 26
>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase regulator; NMR {Homo sapiens}
Probab=22.04 E-value=1.4e+02 Score=23.72 Aligned_cols=48 Identities=21% Similarity=0.229 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHhc-CCCcCCccccCCCCCC-------hhhHH----HHHHHHHh
Q 021340 253 YRRAGQQAERLSEFYEVCKS-LDIGRGERFIKIEQPP-------ASFLQ----AMEEYVKE 301 (314)
Q Consensus 253 y~rf~~q~~~L~~Fy~~c~~-l~~~~~~~iP~l~~~p-------~~~l~----~Lee~l~~ 301 (314)
|..|.+.+.+|.+-|-.-.. +.- ....+|.||..- +++++ .||+|++.
T Consensus 47 YseF~~Lh~~L~~~FP~e~~~~~~-~~r~lP~lP~k~~~~~~~~~~~~e~R~~~Le~YL~~ 106 (149)
T 2l73_A 47 WDEFRQLKKTLKETFPVEAGLLRR-SDRVLPKLLDAPLLGRVGRTSRGLARLQLLETYSRR 106 (149)
T ss_dssp HHHHHHHHHHHHHHCGGGGSSSCS-SCCSSCCCCCCSCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCchhhccccc-ccccccCCCCCeeeccccchHHHHHHHHHHHHHHHH
Confidence 56677788888887753222 221 122467775543 23333 79999874
No 27
>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens}
Probab=21.98 E-value=1.3e+02 Score=23.43 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCccccCCCCC----------ChhhHH----HHHHHHHhC
Q 021340 253 YRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQP----------PASFLQ----AMEEYVKEA 302 (314)
Q Consensus 253 y~rf~~q~~~L~~Fy~~c~~l~~~~~~~iP~l~~~----------p~~~l~----~Lee~l~~~ 302 (314)
|.-|....+.|.+-|- ...+|.||+- .+++++ .||.||+..
T Consensus 51 YsdF~~L~~~L~~~~p---------~~~iP~lP~K~~~~~~~~~~~~~fie~Rr~~Le~fL~~l 105 (138)
T 3iq2_A 51 YQDFLWLKGKLEEAHP---------TLIIPPLPEKFIVKGMVERFNDDFIETRRKALHKFLNRI 105 (138)
T ss_dssp HHHHHHHHHHHHHHCT---------TSCCCCCCCCC----CCGGGCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCc---------CcccCCCCcchhhccccccCCHHHHHHHHHHHHHHHHHH
Confidence 4455555555554431 2346777654 356665 689998843
No 28
>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens}
Probab=21.55 E-value=70 Score=24.13 Aligned_cols=14 Identities=43% Similarity=0.866 Sum_probs=10.0
Q ss_pred ChhhHH----HHHHHHHh
Q 021340 288 PASFLQ----AMEEYVKE 301 (314)
Q Consensus 288 p~~~l~----~Lee~l~~ 301 (314)
.+++++ .||.||+.
T Consensus 90 ~~~~ie~Rr~~Le~fL~~ 107 (128)
T 2i4k_A 90 SAEFLEKRRAALERYLQR 107 (128)
T ss_dssp STTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 355666 79999874
No 29
>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1
Probab=20.51 E-value=1e+02 Score=22.97 Aligned_cols=40 Identities=13% Similarity=0.226 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCcccc-CCCC-------------CChhhHH----HHHHHHHhC
Q 021340 253 YRRAGQQAERLSEFYEVCKSLDIGRGERFI-KIEQ-------------PPASFLQ----AMEEYVKEA 302 (314)
Q Consensus 253 y~rf~~q~~~L~~Fy~~c~~l~~~~~~~iP-~l~~-------------~p~~~l~----~Lee~l~~~ 302 (314)
|.-|...+++|.+.|. ..+| .||+ ..+++++ .||.||+..
T Consensus 35 YsdF~~L~~~L~~~~~----------~~~P~~lP~K~~~~~~~~~~~~~~~~~ie~Rr~~Le~yL~~l 92 (117)
T 1kmd_A 35 YSEFWKLKTRLERDVG----------STIPYDFPEKPGVLDRRWQRRYDDPEMIDERRIGLERFLNEL 92 (117)
T ss_dssp HHHHHHHHHHHHHHHC----------SCCCCCCCCCCCSSCSTTCCCTTCHHHHHHHHTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcC----------ccCCCCCCCCCEecccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 5667777777777653 1244 4433 3567777 799999864
No 30
>2rrh_A VIP peptides; peptide hormone, hormone; NMR {Homo sapiens} PDB: 2rri_A
Probab=20.05 E-value=86 Score=17.87 Aligned_cols=15 Identities=7% Similarity=0.255 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHH
Q 021340 141 SAWVRSYALFLEERL 155 (314)
Q Consensus 141 ~~~Ir~Y~~yL~~rl 155 (314)
+.|...|.+||+++.
T Consensus 4 g~FTsdysk~l~~~~ 18 (29)
T 2rrh_A 4 AVFTDNYTRLRKQMA 18 (29)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHH
Confidence 568889999998874
Done!