Query 021342
Match_columns 314
No_of_seqs 226 out of 1644
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 16:15:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021342.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021342hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 99.9 1.4E-19 4.7E-24 169.8 25.4 268 25-311 23-321 (438)
2 1pw4_A Glycerol-3-phosphate tr 99.8 9E-20 3.1E-24 171.5 22.1 235 62-311 65-314 (451)
3 2gfp_A EMRD, multidrug resista 99.7 2.4E-17 8.3E-22 151.7 15.0 229 53-310 29-260 (375)
4 4aps_A DI-OR tripeptide H+ sym 99.7 1.9E-15 6.4E-20 144.0 23.1 134 62-211 57-194 (491)
5 4gc0_A D-xylose-proton symport 99.7 4.3E-15 1.5E-19 141.4 20.0 143 65-217 61-224 (491)
6 2xut_A Proton/peptide symporte 99.4 3.9E-12 1.3E-16 122.0 17.6 141 56-212 51-197 (524)
7 2cfq_A Lactose permease; trans 99.4 1.4E-12 4.6E-17 122.3 11.7 265 27-311 6-285 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.0 1E-08 3.5E-13 95.7 18.5 171 28-214 252-434 (451)
9 3o7q_A L-fucose-proton symport 98.8 1.1E-07 3.8E-12 88.4 15.4 146 26-184 256-408 (438)
10 2cfq_A Lactose permease; trans 98.7 1.8E-07 6E-12 87.3 14.2 135 66-216 266-403 (417)
11 4aps_A DI-OR tripeptide H+ sym 98.7 1.4E-07 4.9E-12 89.2 13.7 131 66-213 326-471 (491)
12 4gc0_A D-xylose-proton symport 98.7 2.3E-07 7.9E-12 87.7 13.8 143 65-219 318-469 (491)
13 2gfp_A EMRD, multidrug resista 97.9 2E-05 6.8E-10 71.7 8.2 62 110-182 290-351 (375)
14 2xut_A Proton/peptide symporte 97.7 5.6E-05 1.9E-09 71.9 6.8 83 90-182 374-466 (524)
15 2g9p_A Antimicrobial peptide l 34.2 24 0.00081 17.9 1.7 13 79-91 3-15 (26)
16 3arc_T Photosystem II reaction 27.2 86 0.0029 17.4 3.8 17 203-219 12-29 (32)
17 2ko4_B General control protein 23.4 45 0.0015 18.6 1.7 17 9-25 3-22 (34)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.86 E-value=1.4e-19 Score=169.82 Aligned_cols=268 Identities=9% Similarity=0.018 Sum_probs=173.7
Q ss_pred ccccchhhhhHHHHHHHHHHHhhH----hhhhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHH
Q 021342 25 NYTRDVHILSCAFLLIFLAYGAAQ----NLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYW 100 (314)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~~~~----~l~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~ 100 (314)
++++.+..+.+.+++....+.... .++++.+.+........++..+...++++++|+++||+|||++++++.+.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~ 102 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA 102 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence 444455555555554443333332 3344444444333444678888999999999999999999999999999887
Q ss_pred HHHHhh----hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHH
Q 021342 101 LFVAAN----LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLI 176 (314)
Q Consensus 101 ~~~~~~----~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li 176 (314)
+..+.. ..++++.++++|++.|++.+..+++..++++++. ++++|+++++++.....+|..+||++
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~~~g~~~ 172 (438)
T 3o7q_A 103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLG----------PESSGHFRLNLAQTFNSFGAIIAVVF 172 (438)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS----------CSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHc----------CchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 655443 4578999999999999999999999888999886 67899999999999999999999999
Q ss_pred HHHHH-cCCCCCC--------------------CCchhHHHHHHHHHHHHHHHHHHhccCCccccccccccccccccchH
Q 021342 177 TLAVL-KDDKGGS--------------------TSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYL 235 (314)
Q Consensus 177 ~~~i~-~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 235 (314)
++.+. ...+... .+|++.++ +..+...+..++.++.++|+.++++++++ ++++.
T Consensus 173 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~----~~~~~ 247 (438)
T 3o7q_A 173 GQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYM-IIVAIVLLVALLIMLTKFPALQSDNHSDA----KQGSF 247 (438)
T ss_dssp TTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCCTTTCCCCS----STTSH
T ss_pred HHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHcCCcccccccccc----cccch
Confidence 98887 4321000 00655433 33333333333334443333222211111 11222
Q ss_pred HHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhcccccc-cccc-ccccchhhHHHHHHhhHhHHHHHHHHHHHHhh
Q 021342 236 VSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKE-IVTP-ALGVSGVGGAMAVYGAFDAIFLVELLLRWLYF 311 (314)
Q Consensus 236 ~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~-~~~~-~lg~~~ig~~~~~~G~~~~i~~~~~l~~~~~~ 311 (314)
++.+ .+.+++|+.+......+...........++|.+ .... .++..+.|....++++..+++.. ..+++.+-
T Consensus 248 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~~r 321 (438)
T 3o7q_A 248 SASL---SRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRF-TGTWLISR 321 (438)
T ss_dssp HHHH---HHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred hhhH---HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 2323 346788888776665554444444455666655 3332 56677888888888888888664 55555543
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.85 E-value=9e-20 Score=171.53 Aligned_cols=235 Identities=9% Similarity=-0.043 Sum_probs=161.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-h----chhhhHHHHHHHHhhhhhhhhhccchhhH
Q 021342 62 TISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L----FPSWYTMVPASLYLGFAASIIWVGEGTYL 136 (314)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~----~~~~~~l~~~r~l~G~g~~~~~~~~~~~i 136 (314)
....++..+...++++++|+++||+|||++++++.+++.+..+.. + .++++.++++|++.|++.+..+++..+++
T Consensus 65 g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i 144 (451)
T 1pw4_A 65 GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 144 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHH
Confidence 344678889999999999999999999999999999987766654 6 78899999999999999999998888888
Q ss_pred hHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCC
Q 021342 137 TAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKE 216 (314)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 216 (314)
+++. ++++|+++++++.....+|.++||++++.+....+ +|++.+++..+...+..++..+++||+
T Consensus 145 ~~~~----------~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g----~w~~~f~~~~~~~~~~~~~~~~~~~~~ 210 (451)
T 1pw4_A 145 VHWW----------SQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN----DWHAALYMPAFCAILVALFAFAMMRDT 210 (451)
T ss_dssp HTTC----------TTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC----CSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHC----------CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 8876 67899999999999999999999999988765431 287665444333333344445667775
Q ss_pred cccccccc-cccccc------ccchHHHHHHH--HHHhhcChhHHHHHHHHHHHhHHHhhhhccccccccc-cccccchh
Q 021342 217 EDKGEKET-ADASVN------FYSYLVSLSKS--ITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSGV 286 (314)
Q Consensus 217 ~~~~~~~~-~~~~~~------~~~~~~~~~~~--~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~-~~lg~~~i 286 (314)
++.++... ++.... ++++.+...++ ..+.+++|.++.+....+...+.......++|.+... ..++..+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 290 (451)
T 1pw4_A 211 PQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKS 290 (451)
T ss_dssp STTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHH
T ss_pred HhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 43221110 000000 00000011111 2356778888777665555555444455566655543 45667888
Q ss_pred hHHHHHHhhHhHHHHHHHHHHHHhh
Q 021342 287 GGAMAVYGAFDAIFLVELLLRWLYF 311 (314)
Q Consensus 287 g~~~~~~G~~~~i~~~~~l~~~~~~ 311 (314)
|+.+.+.++.+++++. +.+++.|-
T Consensus 291 ~~~~~~~~~~~~~~~~-~~g~l~~~ 314 (451)
T 1pw4_A 291 SWAYFLYEYAGIPGTL-LCGWMSDK 314 (451)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 9999999998888765 55665543
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.74 E-value=2.4e-17 Score=151.73 Aligned_cols=229 Identities=12% Similarity=-0.010 Sum_probs=156.5
Q ss_pred hhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhcc
Q 021342 53 TVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVG 131 (314)
Q Consensus 53 ~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~ 131 (314)
+.+.+........++..+...+++++.|+++||+|||+++..+.+...+..... +.++.+.+++.|++.|++.+..++.
T Consensus 29 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~ 108 (375)
T 2gfp_A 29 DLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVM 108 (375)
T ss_dssp TSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhh
Confidence 333333333344678888889999999999999999999999999887766654 6789999999999999999999999
Q ss_pred chhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHH-HH
Q 021342 132 EGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTI-LM 210 (314)
Q Consensus 132 ~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ 210 (314)
...++.|.. ++++|+++++++.....+|..+||.+++.+.+.. +|++. |.+..+..++..+ ..
T Consensus 109 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-----~~~~~-~~~~~~~~~~~~~~~~ 172 (375)
T 2gfp_A 109 ARTLPRDLY----------ERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW-----NWRAC-YLFLLVLCAGVTFSMA 172 (375)
T ss_dssp HHHHHHHHH----------HTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH-----HHHHH-HHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHC----------CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc-----cHHHH-HHHHHHHHHHHHHHHH
Confidence 889999987 5689999999999999999999999998876432 47654 3333343333333 33
Q ss_pred HhccCCccccccccccccccccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhccccccccc-cccccchhhHH
Q 021342 211 CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSGVGGA 289 (314)
Q Consensus 211 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~-~~lg~~~ig~~ 289 (314)
+++||+++.+++++ +..++++ +.+++|+.+......+............+|.+... ..++..+.|+.
T Consensus 173 ~~~~~~~~~~~~~~-----~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~ 240 (375)
T 2gfp_A 173 RWMPETRPVDAPRT-----RLLTSYK-------TLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSIL 240 (375)
T ss_dssp CSSCCCSTTTCCCC-----CTTTCST-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHH
T ss_pred HHCcccCCCCcccc-----cHHHHHH-------HHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 45666543322110 1111111 23455666555544444444444455566655543 34567788888
Q ss_pred HHHHhhHhHHHHHHHHHHHHh
Q 021342 290 MAVYGAFDAIFLVELLLRWLY 310 (314)
Q Consensus 290 ~~~~G~~~~i~~~~~l~~~~~ 310 (314)
..+.++...+++. ..+|+.|
T Consensus 241 ~~~~~~~~~~~~~-~~~~l~~ 260 (375)
T 2gfp_A 241 FILPIPAAFFGAW-FAGRPNK 260 (375)
T ss_dssp HHTHHHHHHHHHH-HHHTTTT
T ss_pred HHHHHHHHHHHHH-HHHHHHH
Confidence 8888888777554 5555544
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.70 E-value=1.9e-15 Score=144.01 Aligned_cols=134 Identities=10% Similarity=-0.003 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHh-hchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHh
Q 021342 62 TISLGILYTSFTCFSLVASLVVRV-LGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAA 139 (314)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~l~~~-~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~ 139 (314)
....++..++..++++++|+++|| +|||+++.++.+.+.+..+.. +.++.+.++++|++.|++.+..+++..++++|+
T Consensus 57 ~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 136 (491)
T 4aps_A 57 ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTL 136 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 344677888889999999999999 899999999999887766654 678999999999999999999999999999998
Q ss_pred hhhhhhhcCCCCccc--hhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 021342 140 ALSHASNHKLHEGTV--IGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMC 211 (314)
Q Consensus 140 ~~~~~~~~~~~~~~~--rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 211 (314)
. ++++ |+.+++++....++|..+||.+++.+.+.. +|++.+++ ..+..+++.++.+
T Consensus 137 ~----------~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-----g~~~~f~~-~~~~~~~~~~~~~ 194 (491)
T 4aps_A 137 Y----------DEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA-----GYHVAFSL-AAIGMFIGLLVYY 194 (491)
T ss_dssp S----------SSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----CHHHHHHH-HHHHHHHHHHHHH
T ss_pred c----------CcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh-----hHHHHHHH-HHHHHHHHHHHHH
Confidence 6 4556 788888899999999999999999887654 48765444 3444444444443
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.66 E-value=4.3e-15 Score=141.37 Aligned_cols=143 Identities=9% Similarity=0.034 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-------------------hchhhhHHHHHHHHhhhhh
Q 021342 65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-------------------LFPSWYTMVPASLYLGFAA 125 (314)
Q Consensus 65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-------------------~~~~~~~l~~~r~l~G~g~ 125 (314)
.++.+++..++++++|+++||+|||++++++.+++.+..+.. +++|++.++++|+++|+|.
T Consensus 61 ~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~ 140 (491)
T 4gc0_A 61 VASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGV 140 (491)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 466778889999999999999999999999999988766542 3678999999999999999
Q ss_pred hhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCC--chhHHHHHHHHHH
Q 021342 126 SIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTS--GTTLLFIVFLGVI 203 (314)
Q Consensus 126 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~--~~~~~~~~~~~~~ 203 (314)
|..++....|++|++ |+++|++..+.+......|..++++++..+....+....+ |++..+.+.....
T Consensus 141 G~~~~~~~~~i~E~~----------p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (491)
T 4gc0_A 141 GLASMLSPMYIAELA----------PAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPA 210 (491)
T ss_dssp HHHHHHHHHHHHTTS----------CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHhhC----------CHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhh
Confidence 999999999999986 7899999999999999999999999988776543311111 1122233333344
Q ss_pred HHHHHHHHhccCCc
Q 021342 204 TLGTILMCFLRKEE 217 (314)
Q Consensus 204 ~~~~~l~~~l~~~~ 217 (314)
++..+..+++||++
T Consensus 211 ~~~~~~~~~~peSp 224 (491)
T 4gc0_A 211 LLFLMLLYTVPESP 224 (491)
T ss_dssp HHHHHHGGGSCCCH
T ss_pred hhhhhhhhcCCCCh
Confidence 44455556788865
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.43 E-value=3.9e-12 Score=122.04 Aligned_cols=141 Identities=12% Similarity=0.113 Sum_probs=108.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhHHHHHHhh-chhhHHHHHHHHHHHHHHhh-hch-hhhHHHHHHHHhhhhhhhhhccc
Q 021342 56 TEGNLGTISLGILYTSFTCFSLVASLVVRVL-GSKNALILGTTGYWLFVAAN-LFP-SWYTMVPASLYLGFAASIIWVGE 132 (314)
Q Consensus 56 ~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-G~k~~l~~g~~~~~~~~~~~-~~~-~~~~l~~~r~l~G~g~~~~~~~~ 132 (314)
.+........++..+...++++++|+++||+ |||+++.++.+++.+..+.. +.+ +.+.++++|++.|++.+...++.
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 3333333446788888999999999999999 99999999998887766554 667 88899999999999999998888
Q ss_pred hhhHhHhhhhhhhhcCCCCccchhhHHHH---HHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 021342 133 GTYLTAAALSHASNHKLHEGTVIGSFNGE---FWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTIL 209 (314)
Q Consensus 133 ~~~i~~~~~~~~~~~~~~~~~~rg~~~~~---~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 209 (314)
.+++++.. ++++|+++.+. +....++|..+||++++.+.+.. +|++. |.+..++.+++.+.
T Consensus 131 ~~~~~~~~----------~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-----g~~~~-f~~~~~~~~~~~~~ 194 (524)
T 2xut_A 131 SSFMGDQF----------DQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF-----GAAVA-FGIPGVLMFVATVF 194 (524)
T ss_dssp HHHHHHTC----------STTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS-----CHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHc----------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cHHHH-HHHHHHHHHHHHHH
Confidence 88888876 56788766655 88889999999999988877643 47654 44444444444444
Q ss_pred HHh
Q 021342 210 MCF 212 (314)
Q Consensus 210 ~~~ 212 (314)
.++
T Consensus 195 ~~~ 197 (524)
T 2xut_A 195 FWL 197 (524)
T ss_dssp HHS
T ss_pred HHH
Confidence 443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.39 E-value=1.4e-12 Score=122.30 Aligned_cols=265 Identities=13% Similarity=0.065 Sum_probs=137.1
Q ss_pred ccchhhhhHHHHHHHHHHHhhH-----hhhhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHH
Q 021342 27 TRDVHILSCAFLLIFLAYGAAQ-----NLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWL 101 (314)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~~~~-----~l~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~ 101 (314)
.|++..+....++.+.++.... -++++.+.+........++..++..++++++|+++||+|||++++++...+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLV 85 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTS
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 3455555555444444433222 12333444333333446788889999999999999999999999998877643
Q ss_pred HHHh----hhchhh-hHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHH
Q 021342 102 FVAA----NLFPSW-YTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLI 176 (314)
Q Consensus 102 ~~~~----~~~~~~-~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li 176 (314)
.... .+.+.. ..++..+.+.|++.+..+++......++.++ .+++++...+.......+|..+||.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~~~~~~~g~~~~~~l 157 (417)
T 2cfq_A 86 MFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK--------VSRRSNFEFGRARMFGCVGWALGASI 157 (417)
T ss_dssp CHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHH--------HHHHHTCCHHHHSSSTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--------hhhhcccchHHHHHHHHHHHHHHHHH
Confidence 2211 111211 1234566777777776665544444444322 11355666677666678899999999
Q ss_pred HHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccC-CccccccccccccccccchHHHHHHHHHHhhcChhHHHHH
Q 021342 177 TLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRK-EEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLII 255 (314)
Q Consensus 177 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~ 255 (314)
++.+... +|++. |++..+..++..+..++.+| +++..++++++.+.+++.+ .++..+.+++|+.+.+.
T Consensus 158 ~~~l~~~------~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 226 (417)
T 2cfq_A 158 VGIMFTI------NNQFV-FWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFS----LKLALELFRQPKLWFLS 226 (417)
T ss_dssp HHHHHHH------CSHHH-HTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCC----HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHh------chhHH-HHHHHHHHHHHHHHHHHcCccccccccccccccccccccc----HHHHHHHhcCCchhhHH
Confidence 8887653 36554 33333333333333333333 2211111100000111111 12233567788776544
Q ss_pred HHHHHHhHHHhhhhcccccccc----ccccccchhhHHHHHHhhHhHHHHHHHHHHHHhh
Q 021342 256 PLFAYSGLQQAFVWAEFTKEIV----TPALGVSGVGGAMAVYGAFDAIFLVELLLRWLYF 311 (314)
Q Consensus 256 p~~~~~g~~~~f~~~~~~~~~~----~~~lg~~~ig~~~~~~G~~~~i~~~~~l~~~~~~ 311 (314)
...+............+|.++. ....+....|+...+.++.+++++. ..+|+.|-
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~g~l~dr 285 (417)
T 2cfq_A 227 LYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMF-FAPLIINR 285 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3322222111222222333321 1123355667777777777777544 55666543
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.04 E-value=1e-08 Score=95.72 Aligned_cols=171 Identities=12% Similarity=-0.033 Sum_probs=112.6
Q ss_pred cchhhhhHHHHHHHHHHHhhHhhhhhhcCC-CChhH----HHHHHHHHHHHHHHhhHHHHHHhh--chhhHHHHHHHHHH
Q 021342 28 RDVHILSCAFLLIFLAYGAAQNLETTVNTE-GNLGT----ISLGILYTSFTCFSLVASLVVRVL--GSKNALILGTTGYW 100 (314)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~~~~~l~~~i~~~-~~~g~----~~~~~~~~~~~~~~~~~~~l~~~~--G~k~~l~~g~~~~~ 100 (314)
+++..+.+..++....+.......+....+ .+... ...++..++..++.++.+.+.||+ |||+.+..+.....
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 445555555555554444444333333222 22222 234555566777788899999999 99999888876655
Q ss_pred -HHHHhh-hc--hhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhh-hhHHHHH
Q 021342 101 -LFVAAN-LF--PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFAS-HQFVGNL 175 (314)
Q Consensus 101 -~~~~~~-~~--~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~-g~~~G~l 175 (314)
+..+.. +. .+.+.++..-++.|++.+..++....++.+.. |+++||+.+|++.....+ |..+||.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~g~~~~~~~~~~~~~g~~~~~~ 401 (451)
T 1pw4_A 332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELA----------PKKAAGTAAGFTGLFGYLGGSVAASA 401 (451)
T ss_dssp HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTS----------CTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHh----------chhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 333333 33 25666667778889988877766666777764 678899999999999999 9999999
Q ss_pred HHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhcc
Q 021342 176 ITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLR 214 (314)
Q Consensus 176 i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 214 (314)
+.+.+.+.. +++ ..|++..++.+++.++.++++
T Consensus 402 ~~g~l~~~~-----g~~-~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 402 IVGYTVDFF-----GWD-GGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHSS-----CSH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-----CcH-HHHHHHHHHHHHHHHHHHHHH
Confidence 999887764 354 335555566566655555443
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.78 E-value=1.1e-07 Score=88.36 Aligned_cols=146 Identities=9% Similarity=-0.128 Sum_probs=92.9
Q ss_pred cccchhhhhHHHHHHHHHHHhhHhh------hhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHH
Q 021342 26 YTRDVHILSCAFLLIFLAYGAAQNL------ETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGY 99 (314)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~~~~~l------~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~ 99 (314)
+.+++....+..++....+...... ++..+.+........++..++..++.++.++++||+|||+.+..+.++.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~ 335 (438)
T 3o7q_A 256 RIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIA 335 (438)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3445555555555444443333222 2222322222233355666777888899999999999999999988777
Q ss_pred HHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHH
Q 021342 100 WLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITL 178 (314)
Q Consensus 100 ~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~ 178 (314)
.+..+.. +.++...++ .-++.|++.+..++....+..+.. + ++++...++.. ...+|..+||.+.+
T Consensus 336 ~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~-~~~~g~~~~~~~~g 402 (438)
T 3o7q_A 336 MALCLISAFAGGHVGLI-ALTLCSAFMSIQYPTIFSLGIKNL----------G-QDTKYGSSFIV-MTIIGGGIVTPVMG 402 (438)
T ss_dssp HHHHHHHHHCCHHHHHH-HHHHHHHHHTTHHHHHHHHHHSSC----------G-GGHHHHHHHHH-HTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHH-HHHHHHHHHHHHHHHHHHHHHhhc----------c-ccccchhhHHH-HHHHHHHHHHHHHH
Confidence 6655443 455555544 347888888887766555544432 3 34788777766 66799999999988
Q ss_pred HHHcCC
Q 021342 179 AVLKDD 184 (314)
Q Consensus 179 ~i~~~~ 184 (314)
.+.+..
T Consensus 403 ~l~~~~ 408 (438)
T 3o7q_A 403 FVSDAA 408 (438)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887653
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.71 E-value=1.8e-07 Score=87.31 Aligned_cols=135 Identities=17% Similarity=0.085 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhh
Q 021342 66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA 144 (314)
Q Consensus 66 ~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~ 144 (314)
++..+...++.++.++++||+|||+++..+.++.++..+.. +.++...+++..++.|++.+...+....++++..
T Consensus 266 ~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---- 341 (417)
T 2cfq_A 266 TMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF---- 341 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
Confidence 34445566778889999999999999988887776543332 4456666666667777776655555555666664
Q ss_pred hhcCCCCccchhhHHHH-HHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHh-ccCC
Q 021342 145 SNHKLHEGTVIGSFNGE-FWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCF-LRKE 216 (314)
Q Consensus 145 ~~~~~~~~~~rg~~~~~-~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~ 216 (314)
|++.||.+.+. +.....+|.++||.+++.+.+.. ++ ...|.+..++.+++.++.++ .||+
T Consensus 342 ------p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~-----g~-~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 342 ------EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-----GF-QGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp ------CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-----HH-HHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred ------CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-----Cc-HHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 67889998888 46777899999999998876543 23 33455556666666555433 4543
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.71 E-value=1.4e-07 Score=89.24 Aligned_cols=131 Identities=9% Similarity=-0.085 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhhHHHHHHhhchhhHHH-----HHHHHHHHHHHhh-hc---------hhhhHHHHHHHHhhhhhhhhhc
Q 021342 66 GILYTSFTCFSLVASLVVRVLGSKNALI-----LGTTGYWLFVAAN-LF---------PSWYTMVPASLYLGFAASIIWV 130 (314)
Q Consensus 66 ~~~~~~~~~~~~~~~~l~~~~G~k~~l~-----~g~~~~~~~~~~~-~~---------~~~~~l~~~r~l~G~g~~~~~~ 130 (314)
++..+...++.++.+.+.||+|||+... .+.+...+..... .. .+...++++-++.|++.+...+
T Consensus 326 ~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 405 (491)
T 4aps_A 326 SLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISP 405 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTT
T ss_pred ccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhH
Confidence 4555566667778899999999986554 4554443332222 21 2556666778899999998877
Q ss_pred cchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 021342 131 GEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM 210 (314)
Q Consensus 131 ~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 210 (314)
....++.+.. |+++||+..|++.....+|..+|+.+.+.+.+.. . ...|....++.+++.++.
T Consensus 406 ~~~~~~~~~~----------p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~ 468 (491)
T 4aps_A 406 VGLSVTTKLA----------PKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKS------E-VAYFSYFGLGSVVLGIVL 468 (491)
T ss_dssp HHHHHHHHHT----------TTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSS------T-THHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHhC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------H-HHHHHHHHHHHHHHHHHH
Confidence 7777787775 6788999999999999999999999987765432 2 223555555555544444
Q ss_pred Hhc
Q 021342 211 CFL 213 (314)
Q Consensus 211 ~~l 213 (314)
+++
T Consensus 469 ~~~ 471 (491)
T 4aps_A 469 VFL 471 (491)
T ss_dssp HHC
T ss_pred HHH
Confidence 443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.67 E-value=2.3e-07 Score=87.71 Aligned_cols=143 Identities=13% Similarity=0.128 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh--h-hc---hhhhHHHHHHHHhhhhhhhhh-ccchhhHh
Q 021342 65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA--N-LF---PSWYTMVPASLYLGFAASIIW-VGEGTYLT 137 (314)
Q Consensus 65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~--~-~~---~~~~~l~~~r~l~G~g~~~~~-~~~~~~i~ 137 (314)
..+..+...++.++++.++||+|||+.++.+.....+.... . .. ++...++ .-.+...+.+..+ +....+.+
T Consensus 318 ~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 396 (491)
T 4gc0_A 318 TIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL-SMLFYVAAFAMSWGPVCWVLLS 396 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH-HHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHH-HHHHHHHHHHhHHHHHHHHHHH
Confidence 34555666778888999999999999999888766543322 1 11 1222222 2222222222222 23455677
Q ss_pred HhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCC-CCCCCchhHHHHHHHHHHHHHHHH-HHhccC
Q 021342 138 AAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK-GGSTSGTTLLFIVFLGVITLGTIL-MCFLRK 215 (314)
Q Consensus 138 ~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~ 215 (314)
|.+ |.+.|++++|+......++..+++.+...+..... ....++ ...|+++.++++++.++ .+++||
T Consensus 397 E~f----------Pt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~-~~~~~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 397 EIF----------PNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHN-GFSYWIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp HSS----------CTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HhC----------CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHheecC
Confidence 765 77899999999988888888887766443322100 000011 12356666666665554 478999
Q ss_pred Cccc
Q 021342 216 EEDK 219 (314)
Q Consensus 216 ~~~~ 219 (314)
|+.+
T Consensus 466 Tkg~ 469 (491)
T 4gc0_A 466 TKGK 469 (491)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 8654
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.94 E-value=2e-05 Score=71.65 Aligned_cols=62 Identities=10% Similarity=0.039 Sum_probs=51.8
Q ss_pred hhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHc
Q 021342 110 SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK 182 (314)
Q Consensus 110 ~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~ 182 (314)
+.+.+++..++.|++.+..++....++.+.. | ++||+..|++.....+|..+||.+.+.+.+
T Consensus 290 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~----------p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 351 (375)
T 2gfp_A 290 NVWTLLVPAALFFFGAGMLFPLATSGAMEPF----------P-FLAGTAGALVGGLQNIGSGVLASLSAMLPQ 351 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSTTHHHHHTHH----------H-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHhC----------C-cccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5666667788999999998888888887765 4 789999999999999999999998777754
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.67 E-value=5.6e-05 Score=71.91 Aligned_cols=83 Identities=11% Similarity=-0.027 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHHHhh-hc---------hhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHH
Q 021342 90 NALILGTTGYWLFVAAN-LF---------PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFN 159 (314)
Q Consensus 90 ~~l~~g~~~~~~~~~~~-~~---------~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~ 159 (314)
+.+.++.++..+..+.. +. .+.+.++++-++.|++.+...+....++.+.. |+++||+.+
T Consensus 374 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~----------p~~~~g~~~ 443 (524)
T 2xut_A 374 RKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQA----------PKAMKGTIM 443 (524)
T ss_dssp HHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHC----------CTTCCTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------cHHHHhHHH
Confidence 45666666555433332 21 25566777889999999988888777888775 678999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHc
Q 021342 160 GEFWGMFASHQFVGNLITLAVLK 182 (314)
Q Consensus 160 ~~~~~~~~~g~~~G~li~~~i~~ 182 (314)
|++.....+|..+||.+.+.+.+
T Consensus 444 g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 444 SFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp HHHGGGHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999887754
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=34.21 E-value=24 Score=17.92 Aligned_cols=13 Identities=15% Similarity=0.319 Sum_probs=10.4
Q ss_pred HHHHHHhhchhhH
Q 021342 79 ASLVVRVLGSKNA 91 (314)
Q Consensus 79 ~~~l~~~~G~k~~ 91 (314)
.|.+.++||||..
T Consensus 3 fgklikkfgrkai 15 (26)
T 2g9p_A 3 FGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHhHHHH
Confidence 4678999999863
No 16
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=27.22 E-value=86 Score=17.40 Aligned_cols=17 Identities=12% Similarity=0.256 Sum_probs=9.3
Q ss_pred HHHHHH-HHHhccCCccc
Q 021342 203 ITLGTI-LMCFLRKEEDK 219 (314)
Q Consensus 203 ~~~~~~-l~~~l~~~~~~ 219 (314)
+.++++ +..+.+||++.
T Consensus 12 ~tlgiiFFAI~FRePPri 29 (32)
T 3arc_T 12 CIIALFFFAIFFREPPRI 29 (32)
T ss_dssp HHHHHHHHHHHTSCCCCC
T ss_pred HHHHHHHHhhhhcCCCCC
Confidence 334443 44567887654
No 17
>2ko4_B General control protein GCN4; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_B
Probab=23.40 E-value=45 Score=18.59 Aligned_cols=17 Identities=6% Similarity=-0.003 Sum_probs=11.7
Q ss_pred CCCCccc---CCccccCccc
Q 021342 9 EEAPLVA---DSLQVLTPKN 25 (314)
Q Consensus 9 ~~~~l~~---~~~~p~n~~~ 25 (314)
...|++. .++||.+|..
T Consensus 3 DSTP~Fe~d~~~~~~~~WtS 22 (34)
T 2ko4_B 3 DSTPMFEYENLEDNSKEWTS 22 (34)
T ss_dssp CSCCSCSSCCCCCSSGGGTT
T ss_pred CCccceeeccCCCCcchhhh
Confidence 4578887 3348999964
Done!