BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021344
(314 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DLC|A Chain A, Crystal Structure Of A Putative
S-Adenosyl-L-Methionine-Dependent Methyltransferase
(Mmp1179) From Methanococcus Maripaludis At 1.15 A
Resolution
Length = 219
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 4/125 (3%)
Query: 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD 227
G +D+ G G S AK +S + ALDFS++ I N L + +V+ D
Sbjct: 45 GTCIDIGSGPGALSIALAKQSDFS-IRALDFSKHXNEIALKNIADAN--LNDRIQIVQGD 101
Query: 228 VCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG-VFVGTTFLRYTSSTSLTG 286
V +P + D + + ++ W + A EI RIL+SGG ++G F S++
Sbjct: 102 VHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISA 161
Query: 287 RVLRE 291
+R+
Sbjct: 162 EXIRK 166
>pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|B Chain B, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|C Chain C, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|D Chain D, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
Length = 260
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229
++DV+ G G + FA VVA D +E++L+ FI+ + + V+ D
Sbjct: 41 VLDVATGGGHVANAFAP--FVKKVVAFDLTEDILKVARAFIEGNGH---QQVEYVQGDAE 95
Query: 230 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG 268
+ PF V A H +P+P++ V+E R+L+ GG
Sbjct: 96 QXPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGG 134
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 11/105 (10%)
Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
G ++D+ CG+G + K A+SG + V+ D + + + +Q+ L ++A R
Sbjct: 58 GEFILDLGCGTGQLTEKIAQSG--AEVLGTDNAATXIEKA----RQNYPHLHFDVADARN 111
Query: 227 DVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
P +DAV + A LH P A+A I + L+SGG FV
Sbjct: 112 FRVDKP-----LDAVFSNAXLHWVKEPEAAIASIHQALKSGGRFV 151
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229
++DV CG G + K +++G + V +D SE ++ K +L+ ++ D+
Sbjct: 57 VLDVGCGDGYGTYKLSRTGYKA--VGVDISEVXIQ------KGKERGEGPDLSFIKGDLS 108
Query: 230 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG 268
LPF + +A+ A +L P A+ EI R+L+S G
Sbjct: 109 SLPFENEQFEAIXAINSLEWTEEPLRALNEIKRVLKSDG 147
>pdb|1P91|A Chain A, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
pdb|1P91|B Chain B, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
Length = 269
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 99/249 (39%), Gaps = 43/249 (17%)
Query: 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKP 120
FSCP+C++PL R+ ++ + C + + +K+ Y++L P
Sbjct: 3 FSCPLCHQPLSRE-----------KNSYICPQRHQFDXAKEGYVNLL------------P 39
Query: 121 ASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFK-SAQGGLLVDVSCGSGL 179
+ R P S + R+ F +G P + +AQ + + ++D+ CG G
Sbjct: 40 VQHKRSRDPGDSAEXXQA-RRAFLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGY 98
Query: 180 FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD 239
++ FA + LD S+ ++ Q + S+ RLPF+ D
Sbjct: 99 YTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSH--------RLPFSDTSXD 150
Query: 240 AVHAGAALHCWPSPSNAVAEISRILRSGG-VFVGTTFLRYTSSTSLTGRVLREVMLIRIK 298
A+ A P A E++R+++ GG V T R+ L G + EV L
Sbjct: 151 AIIRIYA------PCKA-EELARVVKPGGWVITATPGPRHL--XELKGLIYNEVHLHAPH 201
Query: 299 SHLLSKCTL 307
+ L TL
Sbjct: 202 AEQLEGFTL 210
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/104 (21%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
G +++ CG G + AK+ + + ++D S L + + +++ N+ ++A
Sbjct: 38 GAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI---KNVKFLQA 94
Query: 227 DVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVF 270
++ LPF D + L SP A+ + ++L+ GG
Sbjct: 95 NIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTI 138
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 3/110 (2%)
Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
G ++DV CG G + + A + V + S + Q + L + + A
Sbjct: 62 GDRVLDVGCGIGKPAVRLATARDVR-VTGISISRPQVNQAN--ARATAAGLANRVTFSYA 118
Query: 227 DVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276
D LPF DAV A +LH P A+ E +R+LR GG F+
Sbjct: 119 DAXDLPFEDASFDAVWALESLHHXPDRGRALREXARVLRPGGTVAIADFV 168
>pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
pdb|3BKW|B Chain B, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
Length = 243
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 167 GGL-LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
GGL +VD+ CG G F R + G S V+ LD SE L + +T +T R
Sbjct: 43 GGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKXLARAR--AAGPDTGITYE----R 95
Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274
AD+ +L D ++ ALH + + + L GG FV +T
Sbjct: 96 ADLDKLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFST 144
>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S-
Adenosyl Homocysteine
pdb|1KR5|A Chain A, Crystal Structure Of Human L-Isoaspartyl Methyltransferase
Length = 226
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 166 QGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSN--LA 222
+G +DV GSG+ + FA+ G V+ +D + ++ + +++D+ L S+ +
Sbjct: 77 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQ 136
Query: 223 LVRADVCRLPFA-SGFVDAVHAGAALHCWPS 252
LV D R+ +A DA+H GAA P
Sbjct: 137 LVVGD-GRMGYAEEAPYDAIHVGAAAPVVPQ 166
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV 228
+++DV CG+G+ S AK+G V+A+D SE +L Q D I+ + L + L++ +
Sbjct: 48 VVLDVGCGTGILSMFAAKAGA-KKVIAVDQSE-ILYQAMDIIRLNK--LEDTIVLIKGKI 103
Query: 229 CRLPFASGFVDAV 241
+ VD +
Sbjct: 104 EEVSLPVEKVDVI 116
>pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With
S- Adenosylmethionine At 2.1 A Resolution
pdb|1SQG|A Chain A, The Crystal Structure Of The E. Coli Fmu Apoenzyme At 1.65
A Resolution
Length = 429
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 11/123 (8%)
Query: 92 KCDKTYSSKDNYLDLTVISGLKDYTEVK-PASTELFRSPFVSFL--YERGWRQNFNRSGF 148
+ ++T+ S+D++L L +G+K + P + L V L +E GW
Sbjct: 177 RINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGW--------V 228
Query: 149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD 208
D + + G ++D+ G + + + VVA+D E L + YD
Sbjct: 229 TVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYD 288
Query: 209 FIK 211
+K
Sbjct: 289 NLK 291
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV 228
+++DV CG+G+ S AK+G V+ +D SE +L Q D I+ + L + L++ +
Sbjct: 67 VVLDVGCGTGILSMFAAKAGA-KKVLGVDQSE-ILYQAMDIIRLNK--LEDTITLIKGKI 122
Query: 229 CRLPFASGFVDAV 241
+ VD +
Sbjct: 123 EEVHLPVEKVDVI 135
>pdb|3I9F|A Chain A, Crystal Structure Of A Putative Type 11 Methyltransferase
From Sulfolobus Solfataricus
pdb|3I9F|B Chain B, Crystal Structure Of A Putative Type 11 Methyltransferase
From Sulfolobus Solfataricus
Length = 170
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 13/105 (12%)
Query: 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLAL 223
+ G++VD CG+G + + + T + +D + L++ + K D+ I S
Sbjct: 15 EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKE--KFDSVITLS---- 66
Query: 224 VRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG 268
D +P S VD + + H + ++E+ RIL+ G
Sbjct: 67 ---DPKEIPDNS--VDFILFANSFHDMDDKQHVISEVKRILKDDG 106
>pdb|3EH1|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24b
Length = 751
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 103 YLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNF 143
+ DLT + + T V+ S + +PFVSF+ +R W+ N
Sbjct: 71 FRDLTQLPVITSNTIVRCRSCRTYINPFVSFIDQRRWKCNL 111
>pdb|1AKO|A Chain A, Exonuclease Iii From Escherichia Coli
Length = 268
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 145 RSGFPGPDEEFKMAQEYFKSAQ-GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENML 203
R GFPG DEE AQ A+ LL +V+ +G F + ++ F +N+
Sbjct: 77 RRGFPGDDEE---AQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQ 133
Query: 204 RQCYDFIKQDNTIL 217
+K+DN +L
Sbjct: 134 NYLETELKRDNPVL 147
>pdb|3BXO|A Chain A, Crystal Structure Of Streptomyces Venezuelae Desvi
pdb|3BXO|B Chain B, Crystal Structure Of Streptomyces Venezuelae Desvi
Length = 239
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQC 206
L+DV+CG+G F K + L+ SE+ML
Sbjct: 44 LLDVACGTGTHLEHFTKE--FGDTAGLELSEDMLTHA 78
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 5/102 (4%)
Query: 170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229
++D+ G+G + F S + +D ++ + F ++ N+ +
Sbjct: 25 VLDIGAGAGHTALAF--SPYVQECIGVDATKEXVEVASSFAQEKGV---ENVRFQQGTAE 79
Query: 230 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
LPF D + A H + AV E++R+L+ G F+
Sbjct: 80 SLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFL 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,520,094
Number of Sequences: 62578
Number of extensions: 339728
Number of successful extensions: 712
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 700
Number of HSP's gapped (non-prelim): 20
length of query: 314
length of database: 14,973,337
effective HSP length: 99
effective length of query: 215
effective length of database: 8,778,115
effective search space: 1887294725
effective search space used: 1887294725
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)