Query 021344
Match_columns 314
No_of_seqs 332 out of 3155
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 09:29:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021344.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021344hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2226 UbiE Methylase involve 99.9 9.4E-26 2E-30 193.6 13.1 133 128-278 28-160 (238)
2 PRK11088 rrmA 23S rRNA methylt 99.9 9.9E-25 2.2E-29 194.4 14.8 177 60-276 2-183 (272)
3 PF01209 Ubie_methyltran: ubiE 99.9 2.2E-24 4.7E-29 186.8 12.0 133 128-278 24-157 (233)
4 KOG1540 Ubiquinone biosynthesi 99.9 2.2E-21 4.8E-26 163.8 11.8 136 128-278 77-218 (296)
5 PLN02233 ubiquinone biosynthes 99.9 4E-21 8.7E-26 169.9 13.9 120 159-278 66-186 (261)
6 PLN02244 tocopherol O-methyltr 99.8 1.1E-19 2.4E-24 166.7 16.0 120 155-277 102-226 (340)
7 COG2227 UbiG 2-polyprenyl-3-me 99.8 9.2E-21 2E-25 160.1 7.8 108 165-278 58-165 (243)
8 PF08241 Methyltransf_11: Meth 99.8 4.1E-20 8.8E-25 137.6 9.6 95 171-272 1-95 (95)
9 PLN02396 hexaprenyldihydroxybe 99.8 2.1E-19 4.6E-24 162.4 11.6 108 166-277 131-238 (322)
10 TIGR02752 MenG_heptapren 2-hep 99.8 1.1E-18 2.3E-23 151.9 13.4 119 156-277 35-154 (231)
11 PF13847 Methyltransf_31: Meth 99.8 1.6E-18 3.4E-23 141.1 12.0 107 166-276 3-112 (152)
12 PRK14103 trans-aconitate 2-met 99.8 1.8E-18 3.8E-23 152.8 12.4 109 157-276 20-128 (255)
13 PTZ00098 phosphoethanolamine N 99.8 3.9E-18 8.6E-23 151.0 13.8 124 149-278 35-160 (263)
14 PF12847 Methyltransf_18: Meth 99.8 1.2E-18 2.6E-23 134.1 9.1 106 166-274 1-111 (112)
15 PRK11036 putative S-adenosyl-L 99.8 3.2E-18 6.8E-23 151.2 12.5 115 158-277 37-152 (255)
16 PRK10258 biotin biosynthesis p 99.8 1.1E-17 2.4E-22 147.4 12.9 114 154-277 30-143 (251)
17 KOG1270 Methyltransferases [Co 99.8 1.9E-18 4E-23 147.1 7.5 106 167-278 90-199 (282)
18 PRK05785 hypothetical protein; 99.7 1.6E-17 3.5E-22 143.8 12.9 90 166-267 51-140 (226)
19 PRK15068 tRNA mo(5)U34 methylt 99.7 2.2E-17 4.8E-22 150.0 13.6 118 155-276 111-228 (322)
20 PRK11207 tellurite resistance 99.7 3.6E-17 7.7E-22 138.8 13.1 112 157-274 21-134 (197)
21 PLN02336 phosphoethanolamine N 99.7 6E-17 1.3E-21 155.5 15.7 120 154-278 254-373 (475)
22 COG2230 Cfa Cyclopropane fatty 99.7 1.1E-16 2.3E-21 140.1 15.1 119 155-279 61-181 (283)
23 TIGR00452 methyltransferase, p 99.7 7E-17 1.5E-21 145.4 13.7 117 156-276 111-227 (314)
24 PRK08317 hypothetical protein; 99.7 1.1E-16 2.4E-21 139.5 14.5 118 155-276 8-126 (241)
25 PRK01683 trans-aconitate 2-met 99.7 6.3E-17 1.4E-21 143.1 13.0 111 156-275 21-131 (258)
26 PRK15451 tRNA cmo(5)U34 methyl 99.7 1.9E-16 4E-21 139.2 15.5 125 149-277 37-167 (247)
27 PF13489 Methyltransf_23: Meth 99.7 3E-17 6.5E-22 134.3 9.5 106 157-277 12-118 (161)
28 TIGR00477 tehB tellurite resis 99.7 9.2E-17 2E-21 136.1 12.4 113 157-276 21-135 (195)
29 PF02353 CMAS: Mycolic acid cy 99.7 6.7E-17 1.5E-21 143.2 12.0 118 154-277 50-169 (273)
30 PRK11873 arsM arsenite S-adeno 99.7 1.8E-16 3.9E-21 141.3 14.3 113 162-277 73-186 (272)
31 smart00828 PKS_MT Methyltransf 99.7 1.8E-16 4E-21 137.2 12.6 106 168-276 1-106 (224)
32 TIGR02072 BioC biotin biosynth 99.7 1.7E-16 3.7E-21 138.3 12.4 105 166-277 34-138 (240)
33 KOG4300 Predicted methyltransf 99.7 2.2E-16 4.9E-21 129.5 11.5 117 158-278 68-186 (252)
34 PLN02490 MPBQ/MSBQ methyltrans 99.7 3E-16 6.5E-21 142.4 12.9 105 165-275 112-216 (340)
35 PRK00107 gidB 16S rRNA methylt 99.7 6E-16 1.3E-20 129.6 13.7 101 166-274 45-145 (187)
36 TIGR00740 methyltransferase, p 99.7 5.5E-16 1.2E-20 135.6 13.8 108 166-277 53-164 (239)
37 PF13649 Methyltransf_25: Meth 99.7 5.7E-17 1.2E-21 122.6 6.6 95 170-268 1-101 (101)
38 PF08242 Methyltransf_12: Meth 99.7 6.4E-18 1.4E-22 127.3 0.8 97 171-270 1-99 (99)
39 PRK12335 tellurite resistance 99.7 1.2E-15 2.6E-20 137.0 13.2 103 166-275 120-224 (287)
40 TIGR02469 CbiT precorrin-6Y C5 99.7 2.3E-15 5E-20 117.7 13.1 115 155-275 8-123 (124)
41 PF08003 Methyltransf_9: Prote 99.7 9.3E-16 2E-20 134.3 11.3 119 155-277 104-222 (315)
42 PRK00216 ubiE ubiquinone/menaq 99.6 3.9E-15 8.5E-20 129.8 15.1 119 157-277 42-161 (239)
43 TIGR03840 TMPT_Se_Te thiopurin 99.6 5E-15 1.1E-19 126.8 14.4 111 165-277 33-155 (213)
44 PRK06922 hypothetical protein; 99.6 1.5E-15 3.3E-20 145.9 12.2 109 163-275 415-538 (677)
45 PF03848 TehB: Tellurite resis 99.6 3.2E-15 7E-20 124.6 12.6 113 158-277 22-136 (192)
46 TIGR01934 MenG_MenH_UbiE ubiqu 99.6 4.4E-15 9.5E-20 128.1 13.7 116 157-277 30-146 (223)
47 COG4106 Tam Trans-aconitate me 99.6 1.7E-15 3.7E-20 125.3 10.4 112 157-277 21-132 (257)
48 TIGR00138 gidB 16S rRNA methyl 99.6 6.5E-15 1.4E-19 123.0 12.8 101 166-274 42-142 (181)
49 PRK00121 trmB tRNA (guanine-N( 99.6 3.3E-15 7.1E-20 127.3 11.0 107 166-275 40-157 (202)
50 PRK13944 protein-L-isoaspartat 99.6 1.1E-14 2.4E-19 124.4 13.5 113 154-274 60-173 (205)
51 TIGR03587 Pse_Me-ase pseudamin 99.6 8.2E-15 1.8E-19 124.8 12.6 102 165-277 42-145 (204)
52 PRK11705 cyclopropane fatty ac 99.6 7.4E-15 1.6E-19 136.4 13.2 114 155-278 156-271 (383)
53 TIGR02716 C20_methyl_CrtF C-20 99.6 2.3E-14 4.9E-19 130.0 15.7 120 155-279 138-259 (306)
54 PF05401 NodS: Nodulation prot 99.6 7.1E-15 1.5E-19 121.3 10.2 109 160-276 37-148 (201)
55 PRK06202 hypothetical protein; 99.6 1E-14 2.2E-19 127.1 11.7 108 162-277 56-169 (232)
56 smart00138 MeTrc Methyltransfe 99.6 8.3E-15 1.8E-19 129.7 11.3 109 166-274 99-242 (264)
57 PLN03075 nicotianamine synthas 99.6 3.5E-14 7.5E-19 125.8 13.8 106 166-274 123-233 (296)
58 PLN02336 phosphoethanolamine N 99.6 1.6E-14 3.5E-19 138.7 12.6 114 156-276 27-144 (475)
59 PRK13942 protein-L-isoaspartat 99.6 3.6E-14 7.8E-19 121.7 13.5 113 153-274 63-176 (212)
60 TIGR00537 hemK_rel_arch HemK-r 99.6 3.8E-14 8.3E-19 118.5 13.3 113 157-277 10-143 (179)
61 PRK08287 cobalt-precorrin-6Y C 99.6 5.1E-14 1.1E-18 118.6 13.7 114 154-275 19-132 (187)
62 PRK05134 bifunctional 3-demeth 99.6 4E-14 8.6E-19 123.3 13.3 116 155-276 37-153 (233)
63 TIGR00091 tRNA (guanine-N(7)-) 99.6 1.5E-14 3.2E-19 122.5 9.8 107 166-275 16-133 (194)
64 TIGR02021 BchM-ChlM magnesium 99.6 5.2E-14 1.1E-18 121.5 13.2 111 155-272 42-156 (219)
65 PRK14121 tRNA (guanine-N(7)-)- 99.6 3.3E-14 7.2E-19 130.4 12.5 111 157-275 113-236 (390)
66 PRK13255 thiopurine S-methyltr 99.6 8.2E-14 1.8E-18 119.7 13.8 110 164-275 35-156 (218)
67 PF07021 MetW: Methionine bios 99.6 2.4E-14 5.2E-19 117.9 9.9 103 157-275 6-110 (193)
68 TIGR00080 pimt protein-L-isoas 99.6 5.9E-14 1.3E-18 120.8 12.7 112 154-274 65-177 (215)
69 PF05175 MTS: Methyltransferas 99.5 7.2E-14 1.6E-18 115.8 12.6 119 153-275 18-141 (170)
70 TIGR01983 UbiG ubiquinone bios 99.5 7.6E-14 1.6E-18 120.7 13.2 106 166-276 45-151 (224)
71 PRK00377 cbiT cobalt-precorrin 99.5 3.4E-13 7.4E-18 114.6 14.0 116 154-274 28-145 (198)
72 PRK15001 SAM-dependent 23S rib 99.5 2.4E-13 5.2E-18 125.3 13.8 122 152-274 214-340 (378)
73 PRK09489 rsmC 16S ribosomal RN 99.5 2.1E-13 4.6E-18 124.7 13.3 118 152-275 182-304 (342)
74 TIGR02081 metW methionine bios 99.5 1.3E-13 2.8E-18 116.8 10.7 97 157-266 6-104 (194)
75 PRK07402 precorrin-6B methylas 99.5 6.5E-13 1.4E-17 112.6 13.9 116 154-276 28-144 (196)
76 PRK07580 Mg-protoporphyrin IX 99.5 4.2E-13 9.2E-18 116.5 12.6 108 155-269 49-161 (230)
77 PRK00312 pcm protein-L-isoaspa 99.5 6.6E-13 1.4E-17 114.0 13.5 112 153-275 65-176 (212)
78 PF13659 Methyltransf_26: Meth 99.5 1.1E-13 2.4E-18 107.2 7.7 106 167-275 1-116 (117)
79 PRK11188 rrmJ 23S rRNA methylt 99.5 3.6E-13 7.8E-18 115.2 11.3 100 164-277 49-168 (209)
80 KOG1271 Methyltransferases [Ge 99.5 2.3E-13 5E-18 109.8 9.3 107 168-276 69-183 (227)
81 KOG1541 Predicted protein carb 99.5 3.6E-13 7.9E-18 111.9 10.0 115 153-277 35-163 (270)
82 PLN02585 magnesium protoporphy 99.5 1.1E-12 2.3E-17 118.5 13.9 113 153-271 128-247 (315)
83 PLN02232 ubiquinone biosynthes 99.5 2.3E-13 5.1E-18 111.5 8.5 85 194-278 1-85 (160)
84 TIGR00536 hemK_fam HemK family 99.5 1.5E-12 3.3E-17 116.7 14.2 120 152-274 99-244 (284)
85 PRK14968 putative methyltransf 99.4 2.1E-12 4.6E-17 108.4 14.2 116 156-275 13-149 (188)
86 PRK04266 fibrillarin; Provisio 99.4 1.5E-12 3.1E-17 112.5 13.2 103 161-274 67-176 (226)
87 COG2242 CobL Precorrin-6B meth 99.4 2.7E-12 5.9E-17 105.2 13.7 118 152-276 20-137 (187)
88 TIGR01177 conserved hypothetic 99.4 2E-12 4.3E-17 118.4 13.8 119 153-276 169-296 (329)
89 TIGR00406 prmA ribosomal prote 99.4 1.7E-12 3.6E-17 116.6 12.8 103 166-276 159-261 (288)
90 KOG3010 Methyltransferase [Gen 99.4 6.1E-13 1.3E-17 112.2 8.9 104 169-277 36-140 (261)
91 PRK13256 thiopurine S-methyltr 99.4 4.4E-12 9.6E-17 108.7 14.2 113 163-277 40-166 (226)
92 TIGR03533 L3_gln_methyl protei 99.4 3.5E-12 7.5E-17 114.2 14.2 107 165-274 120-251 (284)
93 TIGR03438 probable methyltrans 99.4 3.1E-12 6.8E-17 115.6 14.0 110 166-277 63-180 (301)
94 TIGR03534 RF_mod_PrmC protein- 99.4 3.5E-12 7.7E-17 112.1 13.7 117 153-274 75-217 (251)
95 PRK14967 putative methyltransf 99.4 3.5E-12 7.6E-17 110.4 13.2 107 163-275 33-160 (223)
96 COG2518 Pcm Protein-L-isoaspar 99.4 3.9E-12 8.5E-17 106.5 12.3 111 154-275 60-170 (209)
97 TIGR00563 rsmB ribosomal RNA s 99.4 4.3E-12 9.3E-17 120.1 13.1 129 153-283 225-377 (426)
98 PRK14901 16S rRNA methyltransf 99.4 4.1E-12 8.9E-17 120.4 12.7 125 152-279 238-389 (434)
99 PRK13943 protein-L-isoaspartat 99.4 4.2E-12 9E-17 114.9 11.6 112 154-274 68-180 (322)
100 PRK11805 N5-glutamine S-adenos 99.4 8.7E-12 1.9E-16 112.7 13.7 104 168-274 135-263 (307)
101 PF01135 PCMT: Protein-L-isoas 99.4 2E-12 4.2E-17 110.1 8.7 112 154-274 60-172 (209)
102 cd02440 AdoMet_MTases S-adenos 99.4 4.6E-12 1E-16 94.5 9.9 101 169-273 1-103 (107)
103 PRK00517 prmA ribosomal protei 99.4 5.3E-12 1.2E-16 111.1 11.7 98 165-276 118-215 (250)
104 PRK10901 16S rRNA methyltransf 99.3 1.2E-11 2.7E-16 116.9 13.8 122 154-279 232-377 (427)
105 COG2519 GCD14 tRNA(1-methylade 99.3 1.8E-11 3.8E-16 104.8 13.2 116 153-276 81-197 (256)
106 PF00891 Methyltransf_2: O-met 99.3 2.2E-11 4.7E-16 106.7 13.2 113 157-282 91-207 (241)
107 PRK00811 spermidine synthase; 99.3 2E-11 4.3E-16 109.3 13.0 109 166-274 76-191 (283)
108 PRK09328 N5-glutamine S-adenos 99.3 3.3E-11 7.2E-16 107.5 14.5 119 152-274 94-238 (275)
109 PF02390 Methyltransf_4: Putat 99.3 1.2E-11 2.7E-16 104.4 10.9 99 168-274 19-133 (195)
110 PRK14903 16S rRNA methyltransf 99.3 1.7E-11 3.6E-16 115.9 12.4 125 155-282 226-374 (431)
111 COG4123 Predicted O-methyltran 99.3 1.1E-11 2.5E-16 106.8 10.3 116 157-274 35-170 (248)
112 PRK04457 spermidine synthase; 99.3 1.3E-11 2.9E-16 109.1 11.0 110 165-277 65-180 (262)
113 PTZ00146 fibrillarin; Provisio 99.3 5E-11 1.1E-15 105.4 14.5 106 162-274 128-237 (293)
114 COG4976 Predicted methyltransf 99.3 1.4E-12 3.1E-17 109.0 4.4 120 147-277 107-228 (287)
115 COG2264 PrmA Ribosomal protein 99.3 1.9E-11 4.1E-16 108.2 11.6 119 149-276 147-265 (300)
116 TIGR00446 nop2p NOL1/NOP2/sun 99.3 2.3E-11 4.9E-16 107.9 12.0 119 159-280 64-205 (264)
117 PRK14966 unknown domain/N5-glu 99.3 3.8E-11 8.3E-16 111.0 13.7 115 154-274 241-381 (423)
118 KOG2361 Predicted methyltransf 99.3 6.4E-12 1.4E-16 106.1 7.7 106 169-278 74-187 (264)
119 COG2813 RsmC 16S RNA G1207 met 99.3 5.2E-11 1.1E-15 104.8 13.6 120 151-275 143-267 (300)
120 TIGR00438 rrmJ cell division p 99.3 3.3E-11 7.1E-16 101.5 11.7 105 157-275 23-147 (188)
121 PRK14902 16S rRNA methyltransf 99.3 3.6E-11 7.8E-16 114.5 12.4 121 154-278 238-383 (444)
122 PF08704 GCD14: tRNA methyltra 99.3 6.3E-11 1.4E-15 103.0 12.8 118 152-276 26-148 (247)
123 PRK14904 16S rRNA methyltransf 99.3 2.5E-11 5.4E-16 115.4 11.3 122 157-282 241-385 (445)
124 PHA03411 putative methyltransf 99.3 9.1E-11 2E-15 102.7 13.6 117 147-274 47-183 (279)
125 PF05724 TPMT: Thiopurine S-me 99.3 6E-11 1.3E-15 101.8 11.9 138 137-276 8-157 (218)
126 PRK01544 bifunctional N5-gluta 99.3 6.5E-11 1.4E-15 113.9 13.5 105 167-274 139-269 (506)
127 PF03291 Pox_MCEL: mRNA cappin 99.3 5E-11 1.1E-15 108.3 11.5 111 166-277 62-189 (331)
128 PF06325 PrmA: Ribosomal prote 99.2 1.9E-11 4.2E-16 109.0 8.0 111 155-277 152-262 (295)
129 smart00650 rADc Ribosomal RNA 99.2 1.1E-10 2.4E-15 96.6 12.0 109 157-275 4-114 (169)
130 PLN02781 Probable caffeoyl-CoA 99.2 9.4E-11 2E-15 102.0 11.3 120 152-276 54-180 (234)
131 COG0220 Predicted S-adenosylme 99.2 6.3E-11 1.4E-15 101.8 9.9 108 159-274 41-164 (227)
132 TIGR03704 PrmC_rel_meth putati 99.2 3.6E-10 7.7E-15 99.4 14.8 102 167-274 87-216 (251)
133 PF05219 DREV: DREV methyltran 99.2 1.8E-10 3.9E-15 99.2 11.6 98 166-277 94-191 (265)
134 PRK01581 speE spermidine synth 99.2 2.1E-10 4.5E-15 104.2 12.5 109 165-274 149-268 (374)
135 KOG1975 mRNA cap methyltransfe 99.2 6.9E-11 1.5E-15 103.7 8.6 112 165-277 116-240 (389)
136 PF05148 Methyltransf_8: Hypot 99.2 7.1E-11 1.5E-15 98.4 8.1 124 129-278 38-162 (219)
137 TIGR00417 speE spermidine synt 99.2 4.8E-10 1E-14 99.8 13.8 109 166-274 72-186 (270)
138 KOG3045 Predicted RNA methylas 99.2 1.9E-10 4.2E-15 97.9 10.1 123 129-278 146-268 (325)
139 PLN02366 spermidine synthase 99.1 8.6E-10 1.9E-14 99.4 14.0 110 165-274 90-206 (308)
140 COG2890 HemK Methylase of poly 99.1 4.6E-10 1E-14 100.0 11.9 101 169-274 113-238 (280)
141 COG4122 Predicted O-methyltran 99.1 4.6E-10 1E-14 95.4 10.8 122 152-278 45-170 (219)
142 PRK13168 rumA 23S rRNA m(5)U19 99.1 1.1E-09 2.5E-14 104.1 12.9 114 152-274 283-400 (443)
143 PRK10909 rsmD 16S rRNA m(2)G96 99.1 1.9E-09 4E-14 91.2 12.5 123 150-277 36-162 (199)
144 PHA03412 putative methyltransf 99.1 1.3E-09 2.8E-14 93.4 10.9 113 146-269 31-158 (241)
145 PRK15128 23S rRNA m(5)C1962 me 99.1 9.6E-10 2.1E-14 102.5 10.7 110 166-277 220-342 (396)
146 PLN02476 O-methyltransferase 99.1 1.9E-09 4.1E-14 95.3 11.9 121 152-277 104-231 (278)
147 PRK03612 spermidine synthase; 99.1 1.3E-09 2.9E-14 105.4 11.6 110 165-274 296-415 (521)
148 PF06080 DUF938: Protein of un 99.0 4.7E-09 1E-13 88.0 13.1 121 154-278 14-145 (204)
149 PF01596 Methyltransf_3: O-met 99.0 8.3E-10 1.8E-14 93.8 8.8 117 156-277 35-158 (205)
150 PF05891 Methyltransf_PK: AdoM 99.0 4.2E-10 9.1E-15 94.7 6.8 109 166-278 55-165 (218)
151 PRK11783 rlmL 23S rRNA m(2)G24 99.0 9.4E-10 2E-14 110.1 10.5 109 166-276 538-658 (702)
152 PRK03522 rumB 23S rRNA methylu 99.0 1.8E-09 3.8E-14 98.3 11.0 113 154-274 161-274 (315)
153 COG1041 Predicted DNA modifica 99.0 2E-09 4.3E-14 96.7 10.6 119 152-275 183-311 (347)
154 PF03141 Methyltransf_29: Puta 99.0 2.7E-10 5.9E-15 106.1 4.6 116 150-277 97-222 (506)
155 PF10294 Methyltransf_16: Puta 99.0 2.1E-09 4.7E-14 89.2 9.6 114 163-277 42-159 (173)
156 PRK10611 chemotaxis methyltran 99.0 4.1E-09 8.8E-14 93.8 11.0 127 148-274 96-262 (287)
157 TIGR00479 rumA 23S rRNA (uraci 99.0 3.1E-09 6.8E-14 100.9 10.4 113 154-274 280-396 (431)
158 KOG2904 Predicted methyltransf 99.0 7.3E-09 1.6E-13 89.2 10.9 125 151-277 130-288 (328)
159 PRK01544 bifunctional N5-gluta 98.9 3E-09 6.5E-14 102.5 9.5 101 166-274 347-462 (506)
160 KOG2899 Predicted methyltransf 98.9 3.5E-09 7.7E-14 89.6 8.6 109 166-274 58-209 (288)
161 COG3963 Phospholipid N-methylt 98.9 1.6E-08 3.5E-13 80.9 11.7 125 145-277 27-159 (194)
162 COG0421 SpeE Spermidine syntha 98.9 1.3E-08 2.9E-13 90.2 12.2 105 168-274 78-190 (282)
163 PLN02589 caffeoyl-CoA O-methyl 98.9 7.7E-09 1.7E-13 90.2 10.3 120 152-276 65-192 (247)
164 KOG2940 Predicted methyltransf 98.9 2.5E-09 5.5E-14 89.7 6.8 105 167-277 73-177 (325)
165 PRK00274 ksgA 16S ribosomal RN 98.9 5.6E-09 1.2E-13 93.0 9.4 86 151-244 27-112 (272)
166 TIGR02085 meth_trns_rumB 23S r 98.9 5.8E-09 1.3E-13 97.1 9.8 111 156-274 223-334 (374)
167 KOG1269 SAM-dependent methyltr 98.9 3.1E-09 6.8E-14 97.4 7.7 143 133-278 70-219 (364)
168 PLN02672 methionine S-methyltr 98.9 1.6E-08 3.4E-13 103.8 13.5 108 167-274 119-278 (1082)
169 PF01170 UPF0020: Putative RNA 98.9 1.2E-08 2.7E-13 85.1 10.4 119 153-274 15-150 (179)
170 PF01739 CheR: CheR methyltran 98.9 6.9E-09 1.5E-13 87.5 8.9 109 166-274 31-175 (196)
171 PRK14896 ksgA 16S ribosomal RN 98.9 1E-08 2.2E-13 90.7 10.3 86 152-246 15-100 (258)
172 PF05185 PRMT5: PRMT5 arginine 98.9 2.1E-08 4.6E-13 94.8 12.9 102 167-271 187-294 (448)
173 COG2263 Predicted RNA methylas 98.9 1.6E-08 3.4E-13 82.9 9.9 73 164-244 43-115 (198)
174 KOG1499 Protein arginine N-met 98.9 8E-09 1.7E-13 92.4 8.7 103 165-271 59-164 (346)
175 PRK04148 hypothetical protein; 98.9 2.9E-08 6.2E-13 77.8 10.8 106 154-277 4-112 (134)
176 TIGR00755 ksgA dimethyladenosi 98.9 6E-08 1.3E-12 85.5 14.2 80 151-239 14-93 (253)
177 PF12147 Methyltransf_20: Puta 98.9 8E-08 1.7E-12 84.0 13.9 108 165-274 134-249 (311)
178 PTZ00338 dimethyladenosine tra 98.8 1.8E-08 3.8E-13 90.5 10.2 87 152-244 22-108 (294)
179 PRK04338 N(2),N(2)-dimethylgua 98.8 2.3E-08 4.9E-13 92.9 10.4 111 157-274 47-158 (382)
180 KOG3178 Hydroxyindole-O-methyl 98.8 3.4E-08 7.3E-13 88.5 9.4 99 167-277 178-278 (342)
181 PRK00536 speE spermidine synth 98.8 9.5E-08 2.1E-12 83.9 12.0 100 165-274 71-171 (262)
182 TIGR00095 RNA methyltransferas 98.8 1.2E-07 2.6E-12 79.8 12.0 120 153-276 35-161 (189)
183 PLN02823 spermine synthase 98.8 1.1E-07 2.3E-12 86.9 12.5 108 166-274 103-220 (336)
184 KOG1661 Protein-L-isoaspartate 98.7 5.3E-08 1.2E-12 80.8 8.8 112 157-274 71-193 (237)
185 PF02527 GidB: rRNA small subu 98.7 9.2E-08 2E-12 79.8 9.8 98 169-274 51-148 (184)
186 KOG1331 Predicted methyltransf 98.7 1.2E-08 2.6E-13 88.7 4.2 108 157-278 35-147 (293)
187 PF02475 Met_10: Met-10+ like- 98.7 3.9E-08 8.5E-13 83.0 7.2 100 165-271 100-199 (200)
188 PF07942 N2227: N2227-like pro 98.7 1.6E-07 3.4E-12 82.6 11.0 128 166-295 56-232 (270)
189 PF01564 Spermine_synth: Sperm 98.7 6.9E-08 1.5E-12 84.6 8.1 109 166-274 76-191 (246)
190 COG1352 CheR Methylase of chem 98.7 1.1E-07 2.5E-12 83.6 9.4 108 167-274 97-241 (268)
191 PRK11933 yebU rRNA (cytosine-C 98.7 2E-07 4.3E-12 88.7 11.3 118 159-279 104-247 (470)
192 PF03602 Cons_hypoth95: Conser 98.7 6E-08 1.3E-12 81.0 7.0 126 149-277 23-156 (183)
193 COG1092 Predicted SAM-dependen 98.6 1.6E-07 3.5E-12 86.8 9.5 110 167-278 218-340 (393)
194 TIGR02143 trmA_only tRNA (urac 98.6 1.5E-07 3.4E-12 86.8 9.2 111 153-274 185-311 (353)
195 PRK05031 tRNA (uracil-5-)-meth 98.6 1.7E-07 3.7E-12 86.9 9.1 112 152-274 193-320 (362)
196 TIGR00478 tly hemolysin TlyA f 98.6 4E-07 8.7E-12 78.6 10.7 90 165-272 74-169 (228)
197 PRK11727 23S rRNA mA1618 methy 98.6 2.8E-07 6.2E-12 83.3 10.1 80 166-247 114-199 (321)
198 KOG3420 Predicted RNA methylas 98.6 7E-08 1.5E-12 75.4 5.1 86 157-247 39-124 (185)
199 COG2521 Predicted archaeal met 98.6 4.2E-08 9.2E-13 82.7 3.8 113 160-274 128-245 (287)
200 KOG1663 O-methyltransferase [S 98.6 5.5E-07 1.2E-11 76.1 10.4 124 148-276 55-185 (237)
201 KOG3191 Predicted N6-DNA-methy 98.6 4.7E-07 1E-11 73.6 9.3 110 164-278 41-172 (209)
202 PF02384 N6_Mtase: N-6 DNA Met 98.6 2.7E-07 5.9E-12 83.9 8.9 130 146-276 26-185 (311)
203 COG2520 Predicted methyltransf 98.5 9.6E-07 2.1E-11 80.0 12.0 130 154-292 178-307 (341)
204 KOG2915 tRNA(1-methyladenosine 98.5 1.4E-06 2.9E-11 75.3 12.0 114 154-274 93-210 (314)
205 KOG0820 Ribosomal RNA adenine 98.5 5.3E-07 1.1E-11 77.8 9.4 86 153-244 45-130 (315)
206 COG0030 KsgA Dimethyladenosine 98.5 6.7E-07 1.4E-11 78.0 9.5 86 152-244 16-102 (259)
207 KOG1500 Protein arginine N-met 98.5 5.7E-07 1.2E-11 79.7 9.0 102 165-272 176-280 (517)
208 COG0500 SmtA SAM-dependent met 98.5 1.7E-06 3.8E-11 68.9 11.3 104 170-278 52-159 (257)
209 COG2265 TrmA SAM-dependent met 98.5 5.1E-07 1.1E-11 85.0 9.1 110 151-274 278-396 (432)
210 PF11968 DUF3321: Putative met 98.5 2.5E-07 5.4E-12 77.8 6.3 90 168-278 53-153 (219)
211 COG0742 N6-adenine-specific me 98.5 2.7E-06 5.9E-11 70.4 11.3 126 149-277 24-157 (187)
212 PRK00050 16S rRNA m(4)C1402 me 98.4 5.1E-07 1.1E-11 80.7 7.3 85 155-244 8-97 (296)
213 PF10672 Methyltrans_SAM: S-ad 98.4 1.1E-06 2.3E-11 78.3 9.3 110 166-277 123-241 (286)
214 COG0144 Sun tRNA and rRNA cyto 98.4 3.7E-06 8E-11 77.7 13.0 129 153-284 143-298 (355)
215 COG0357 GidB Predicted S-adeno 98.4 1.7E-06 3.7E-11 73.5 9.2 101 167-274 68-168 (215)
216 PF09243 Rsm22: Mitochondrial 98.4 3.3E-06 7.2E-11 75.2 11.0 114 157-277 24-142 (274)
217 PF08123 DOT1: Histone methyla 98.4 1.3E-06 2.8E-11 74.2 7.7 116 156-273 32-157 (205)
218 TIGR03439 methyl_EasF probable 98.4 9.8E-06 2.1E-10 73.4 13.6 110 166-276 76-199 (319)
219 PF09445 Methyltransf_15: RNA 98.4 4.7E-07 1E-11 73.6 4.5 72 169-244 2-76 (163)
220 KOG3115 Methyltransferase-like 98.3 3.1E-06 6.7E-11 70.1 9.1 103 167-274 61-183 (249)
221 KOG2352 Predicted spermine/spe 98.3 4E-06 8.6E-11 78.4 10.6 103 169-276 51-163 (482)
222 KOG3987 Uncharacterized conser 98.3 2.8E-07 6E-12 76.4 2.5 98 166-277 112-210 (288)
223 TIGR02987 met_A_Alw26 type II 98.3 6.8E-06 1.5E-10 80.1 11.3 95 147-244 5-119 (524)
224 TIGR00308 TRM1 tRNA(guanine-26 98.3 6.5E-06 1.4E-10 76.3 10.4 100 168-274 46-147 (374)
225 PRK11783 rlmL 23S rRNA m(2)G24 98.2 1.4E-05 3.1E-10 80.3 12.2 123 151-275 174-348 (702)
226 PRK11827 hypothetical protein; 98.2 6.4E-07 1.4E-11 59.5 1.5 45 58-111 6-50 (60)
227 KOG1709 Guanidinoacetate methy 98.2 9.2E-06 2E-10 67.9 8.3 104 165-273 100-205 (271)
228 COG0293 FtsJ 23S rRNA methylas 98.2 1.2E-05 2.7E-10 67.5 9.0 106 158-277 37-162 (205)
229 COG2835 Uncharacterized conser 98.2 1.1E-06 2.3E-11 57.8 2.0 45 58-111 6-50 (60)
230 PF01728 FtsJ: FtsJ-like methy 98.2 1.3E-06 2.8E-11 72.9 3.2 99 166-278 23-143 (181)
231 COG0116 Predicted N6-adenine-s 98.1 3E-05 6.5E-10 71.0 11.7 121 152-274 177-344 (381)
232 COG3897 Predicted methyltransf 98.1 8.2E-06 1.8E-10 67.3 7.2 116 154-277 67-182 (218)
233 PF13679 Methyltransf_32: Meth 98.1 2.9E-05 6.2E-10 62.2 10.2 103 165-274 24-131 (141)
234 PF04672 Methyltransf_19: S-ad 98.1 3.4E-05 7.3E-10 67.5 11.1 116 159-277 60-193 (267)
235 PRK11760 putative 23S rRNA C24 98.1 1.6E-05 3.5E-10 71.7 9.2 87 165-267 210-296 (357)
236 PF05958 tRNA_U5-meth_tr: tRNA 98.1 7.8E-06 1.7E-10 75.5 7.3 73 152-230 183-255 (352)
237 PF00398 RrnaAD: Ribosomal RNA 98.1 1.4E-05 3.1E-10 70.8 8.4 105 152-266 16-123 (262)
238 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.1 1.4E-05 3E-10 71.6 7.9 124 156-282 75-227 (283)
239 COG4076 Predicted RNA methylas 98.1 1.3E-05 2.9E-10 65.6 6.8 99 167-272 33-133 (252)
240 PF01269 Fibrillarin: Fibrilla 98.0 7.7E-05 1.7E-09 63.2 10.7 108 162-276 69-180 (229)
241 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.0 9.8E-06 2.1E-10 70.9 5.2 110 166-277 56-202 (256)
242 KOG2730 Methylase [General fun 97.9 1.1E-05 2.4E-10 67.7 3.9 92 149-244 76-172 (263)
243 COG4262 Predicted spermidine s 97.9 9.1E-05 2E-09 66.8 9.7 130 166-300 289-435 (508)
244 TIGR01444 fkbM_fam methyltrans 97.9 6.2E-05 1.4E-09 60.0 8.0 59 169-230 1-59 (143)
245 TIGR00006 S-adenosyl-methyltra 97.9 7.7E-05 1.7E-09 67.0 9.1 88 153-244 7-99 (305)
246 PF03059 NAS: Nicotianamine sy 97.8 0.00024 5.1E-09 62.9 11.0 106 167-274 121-230 (276)
247 KOG2187 tRNA uracil-5-methyltr 97.8 3.4E-05 7.3E-10 72.5 4.9 77 149-230 366-442 (534)
248 KOG2798 Putative trehalase [Ca 97.7 0.00014 3E-09 64.3 7.9 111 166-278 150-300 (369)
249 COG4798 Predicted methyltransf 97.7 0.00011 2.5E-09 60.6 6.5 117 160-279 42-171 (238)
250 PF03966 Trm112p: Trm112p-like 97.7 1.8E-05 4E-10 54.8 1.5 46 57-102 4-68 (68)
251 PF04816 DUF633: Family of unk 97.7 0.00044 9.5E-09 58.8 10.1 114 170-296 1-115 (205)
252 KOG3201 Uncharacterized conser 97.6 2.4E-05 5.3E-10 62.5 1.9 122 157-278 20-144 (201)
253 COG4627 Uncharacterized protei 97.6 3.1E-05 6.8E-10 61.4 1.8 57 221-277 31-89 (185)
254 PF13578 Methyltransf_24: Meth 97.6 1.2E-05 2.6E-10 60.9 -0.9 100 171-274 1-105 (106)
255 KOG0024 Sorbitol dehydrogenase 97.5 0.0013 2.8E-08 58.8 11.4 113 160-285 163-284 (354)
256 PF06962 rRNA_methylase: Putat 97.5 0.00035 7.5E-09 55.3 6.3 83 192-278 1-96 (140)
257 COG1189 Predicted rRNA methyla 97.5 0.00067 1.5E-08 58.0 8.3 98 164-274 77-178 (245)
258 COG1889 NOP1 Fibrillarin-like 97.4 0.003 6.4E-08 52.7 11.7 106 162-277 72-183 (231)
259 KOG4589 Cell division protein 97.4 0.00089 1.9E-08 55.0 7.7 101 164-278 67-188 (232)
260 KOG1122 tRNA and rRNA cytosine 97.3 0.0013 2.8E-08 60.6 9.3 119 162-284 237-381 (460)
261 COG0286 HsdM Type I restrictio 97.3 0.0043 9.3E-08 59.9 12.9 145 146-293 166-344 (489)
262 COG2384 Predicted SAM-dependen 97.3 0.0027 5.8E-08 53.8 9.8 113 154-273 6-119 (226)
263 PF04989 CmcI: Cephalosporin h 97.2 0.00066 1.4E-08 57.3 5.8 112 161-276 27-149 (206)
264 PF07091 FmrO: Ribosomal RNA m 97.2 0.00095 2.1E-08 57.8 6.4 81 166-251 105-185 (251)
265 KOG4058 Uncharacterized conser 97.1 0.0022 4.7E-08 50.7 7.4 118 149-274 55-172 (199)
266 PF05971 Methyltransf_10: Prot 97.1 0.0015 3.2E-08 58.5 7.2 92 154-249 85-189 (299)
267 COG1064 AdhP Zn-dependent alco 97.1 0.0071 1.5E-07 55.1 11.7 99 162-277 162-262 (339)
268 PF03141 Methyltransf_29: Puta 97.1 0.00095 2.1E-08 63.0 5.8 97 164-274 363-467 (506)
269 PRK10742 putative methyltransf 97.0 0.0028 6.1E-08 55.0 7.8 117 156-276 76-221 (250)
270 PF01795 Methyltransf_5: MraW 97.0 0.00083 1.8E-08 60.4 4.5 85 155-243 9-99 (310)
271 PF01861 DUF43: Protein of unk 97.0 0.022 4.7E-07 49.2 12.7 101 166-272 44-147 (243)
272 COG5459 Predicted rRNA methyla 96.9 0.0039 8.5E-08 56.2 7.8 112 162-277 109-228 (484)
273 COG0275 Predicted S-adenosylme 96.9 0.0059 1.3E-07 54.2 8.5 86 154-243 11-102 (314)
274 PRK09424 pntA NAD(P) transhydr 96.7 0.014 3.1E-07 56.3 10.7 101 164-275 162-286 (509)
275 COG1063 Tdh Threonine dehydrog 96.7 0.022 4.8E-07 52.7 11.5 100 165-279 167-274 (350)
276 PF03269 DUF268: Caenorhabditi 96.7 0.0021 4.5E-08 51.7 3.7 100 167-278 2-115 (177)
277 KOG2198 tRNA cytosine-5-methyl 96.6 0.02 4.4E-07 52.2 10.4 119 161-282 150-304 (375)
278 PF11599 AviRa: RRNA methyltra 96.6 0.021 4.6E-07 48.2 9.3 120 155-274 40-214 (246)
279 KOG1596 Fibrillarin and relate 96.5 0.018 3.8E-07 49.5 8.7 106 162-277 152-264 (317)
280 KOG2793 Putative N2,N2-dimethy 96.5 0.019 4E-07 50.1 9.0 111 166-278 86-203 (248)
281 PLN02668 indole-3-acetate carb 96.4 0.0098 2.1E-07 55.3 7.0 112 167-278 64-241 (386)
282 KOG1562 Spermidine synthase [A 96.3 0.019 4.2E-07 50.7 7.9 105 165-274 120-236 (337)
283 PF07757 AdoMet_MTase: Predict 96.3 0.005 1.1E-07 46.0 3.5 33 166-200 58-90 (112)
284 PF03492 Methyltransf_7: SAM d 96.3 0.046 1E-06 50.2 10.6 128 165-295 15-209 (334)
285 PF02005 TRM: N2,N2-dimethylgu 96.2 0.011 2.4E-07 55.0 6.5 104 167-276 50-156 (377)
286 PRK11524 putative methyltransf 96.2 0.021 4.6E-07 51.2 7.9 58 152-212 195-252 (284)
287 KOG1099 SAM-dependent methyltr 96.2 0.0096 2.1E-07 50.7 5.2 111 167-293 42-180 (294)
288 PF01555 N6_N4_Mtase: DNA meth 96.1 0.021 4.6E-07 48.8 7.3 55 151-208 177-231 (231)
289 cd08283 FDH_like_1 Glutathione 96.1 0.064 1.4E-06 50.2 10.9 106 161-275 179-307 (386)
290 PRK09880 L-idonate 5-dehydroge 96.0 0.058 1.3E-06 49.5 10.1 100 164-276 167-268 (343)
291 COG1867 TRM1 N2,N2-dimethylgua 96.0 0.045 9.8E-07 50.0 8.8 105 167-278 53-158 (380)
292 PF04445 SAM_MT: Putative SAM- 95.9 0.022 4.8E-07 49.2 6.4 91 157-249 64-163 (234)
293 KOG0822 Protein kinase inhibit 95.9 0.042 9.2E-07 52.3 8.7 107 167-277 368-481 (649)
294 PRK13699 putative methylase; P 95.9 0.044 9.5E-07 47.5 8.0 60 151-213 149-208 (227)
295 PF13719 zinc_ribbon_5: zinc-r 95.5 0.0069 1.5E-07 36.4 1.2 35 60-98 2-36 (37)
296 KOG1501 Arginine N-methyltrans 95.5 0.032 7E-07 51.9 6.0 72 169-243 69-141 (636)
297 PF10571 UPF0547: Uncharacteri 95.4 0.0085 1.8E-07 32.9 1.2 24 62-98 2-25 (26)
298 TIGR00561 pntA NAD(P) transhyd 95.4 0.059 1.3E-06 52.0 7.7 97 165-272 162-282 (511)
299 PF08274 PhnA_Zn_Ribbon: PhnA 95.1 0.011 2.4E-07 33.5 1.2 26 62-97 4-29 (30)
300 COG1568 Predicted methyltransf 95.1 0.21 4.6E-06 43.9 9.4 103 166-274 152-260 (354)
301 PRK00420 hypothetical protein; 95.1 0.013 2.9E-07 44.4 1.8 31 61-101 24-54 (112)
302 PF02636 Methyltransf_28: Puta 95.0 0.035 7.6E-07 48.8 4.6 46 167-212 19-72 (252)
303 PHA01634 hypothetical protein 94.9 0.08 1.7E-06 41.0 5.7 47 166-213 28-74 (156)
304 cd08254 hydroxyacyl_CoA_DH 6-h 94.8 0.31 6.8E-06 44.1 10.6 96 163-275 162-264 (338)
305 PF13717 zinc_ribbon_4: zinc-r 94.8 0.018 3.8E-07 34.4 1.4 34 60-97 2-35 (36)
306 PF08271 TF_Zn_Ribbon: TFIIB z 94.7 0.016 3.5E-07 36.1 1.3 29 61-97 1-29 (43)
307 COG4301 Uncharacterized conser 94.6 0.48 1E-05 41.1 10.3 114 162-278 74-197 (321)
308 cd08237 ribitol-5-phosphate_DH 94.6 0.21 4.6E-06 45.8 9.0 96 164-276 161-258 (341)
309 PF11312 DUF3115: Protein of u 94.6 0.22 4.8E-06 44.7 8.5 109 167-275 87-243 (315)
310 TIGR01202 bchC 2-desacetyl-2-h 94.5 0.23 4.9E-06 44.9 8.9 89 166-276 144-233 (308)
311 KOG1088 Uncharacterized conser 94.5 0.018 3.9E-07 43.3 1.3 28 82-109 93-120 (124)
312 KOG2671 Putative RNA methylase 94.5 0.032 6.8E-07 50.4 3.0 83 158-243 200-290 (421)
313 cd08230 glucose_DH Glucose deh 94.5 0.25 5.4E-06 45.6 9.1 96 164-276 170-271 (355)
314 KOG2920 Predicted methyltransf 94.4 0.056 1.2E-06 47.7 4.4 105 166-274 116-234 (282)
315 PHA00626 hypothetical protein 94.4 0.026 5.6E-07 36.6 1.7 33 61-97 1-33 (59)
316 PF03514 GRAS: GRAS domain fam 94.4 0.51 1.1E-05 44.1 11.0 137 156-294 100-263 (374)
317 PRK09678 DNA-binding transcrip 94.3 0.029 6.2E-07 39.0 1.9 50 60-110 1-52 (72)
318 TIGR03366 HpnZ_proposed putati 94.3 0.56 1.2E-05 41.7 10.7 96 163-275 117-219 (280)
319 TIGR02822 adh_fam_2 zinc-bindi 94.2 0.51 1.1E-05 43.1 10.6 94 162-275 161-255 (329)
320 COG3129 Predicted SAM-dependen 94.2 0.14 3.1E-06 43.8 6.2 99 148-249 54-165 (292)
321 COG1198 PriA Primosomal protei 94.1 0.35 7.5E-06 48.8 9.8 109 167-278 483-604 (730)
322 KOG1253 tRNA methyltransferase 94.0 0.043 9.3E-07 51.9 2.9 105 165-275 108-217 (525)
323 COG3510 CmcI Cephalosporin hyd 94.0 0.22 4.8E-06 41.4 6.7 112 159-278 62-184 (237)
324 TIGR01206 lysW lysine biosynth 94.0 0.074 1.6E-06 34.7 3.2 32 60-98 2-33 (54)
325 COG1997 RPL43A Ribosomal prote 93.9 0.032 7E-07 39.7 1.5 30 59-97 34-63 (89)
326 PF14803 Nudix_N_2: Nudix N-te 93.9 0.033 7.1E-07 32.7 1.3 29 63-96 3-31 (34)
327 PF00107 ADH_zinc_N: Zinc-bind 93.8 0.22 4.9E-06 38.5 6.4 84 176-277 1-92 (130)
328 cd00401 AdoHcyase S-adenosyl-L 93.8 0.6 1.3E-05 44.1 10.2 101 154-275 188-290 (413)
329 PF06859 Bin3: Bicoid-interact 93.7 0.018 3.8E-07 43.4 -0.1 38 237-274 1-44 (110)
330 KOG2651 rRNA adenine N-6-methy 93.6 0.25 5.3E-06 45.4 7.0 52 156-208 143-194 (476)
331 cd08281 liver_ADH_like1 Zinc-d 93.5 0.68 1.5E-05 43.0 10.2 100 161-275 186-291 (371)
332 COG1645 Uncharacterized Zn-fin 93.5 0.037 8E-07 42.9 1.3 26 61-97 29-54 (131)
333 TIGR03451 mycoS_dep_FDH mycoth 93.5 0.92 2E-05 41.8 10.9 99 162-275 172-277 (358)
334 cd00315 Cyt_C5_DNA_methylase C 93.4 0.16 3.5E-06 45.3 5.6 67 169-245 2-70 (275)
335 PF12692 Methyltransf_17: S-ad 93.4 0.87 1.9E-05 36.3 8.8 93 167-277 29-137 (160)
336 KOG2539 Mitochondrial/chloropl 93.4 0.12 2.6E-06 48.6 4.7 111 165-278 199-319 (491)
337 KOG2352 Predicted spermine/spe 93.3 0.11 2.3E-06 49.3 4.4 114 166-283 295-425 (482)
338 PF09538 FYDLN_acid: Protein o 93.3 0.047 1E-06 41.3 1.7 29 62-100 11-39 (108)
339 PRK00398 rpoP DNA-directed RNA 93.3 0.076 1.6E-06 33.5 2.4 30 59-97 2-31 (46)
340 COG1565 Uncharacterized conser 93.2 0.38 8.2E-06 44.1 7.5 51 163-213 74-132 (370)
341 TIGR02098 MJ0042_CXXC MJ0042 f 93.2 0.041 8.8E-07 33.1 0.9 35 60-98 2-36 (38)
342 TIGR00595 priA primosomal prot 93.0 1.8 3.9E-05 42.2 12.4 34 167-200 261-294 (505)
343 PF11781 RRN7: RNA polymerase 92.9 0.059 1.3E-06 32.1 1.3 28 59-96 7-34 (36)
344 PRK14873 primosome assembly pr 92.8 0.56 1.2E-05 47.1 8.8 96 167-274 430-536 (665)
345 PF09862 DUF2089: Protein of u 92.8 0.049 1.1E-06 41.3 1.0 22 63-97 1-22 (113)
346 PF01096 TFIIS_C: Transcriptio 92.7 0.045 9.7E-07 33.3 0.7 37 61-97 1-38 (39)
347 PF13240 zinc_ribbon_2: zinc-r 92.7 0.051 1.1E-06 28.8 0.7 22 62-96 1-22 (23)
348 TIGR00027 mthyl_TIGR00027 meth 92.6 2.5 5.5E-05 37.3 11.8 117 158-277 74-200 (260)
349 TIGR00497 hsdM type I restrict 92.6 3.4 7.3E-05 40.2 13.7 127 148-275 197-356 (501)
350 cd05188 MDR Medium chain reduc 92.4 2.1 4.5E-05 37.1 11.1 96 165-276 133-234 (271)
351 PLN02740 Alcohol dehydrogenase 92.3 1.4 3.1E-05 41.0 10.5 100 162-276 194-302 (381)
352 PRK00432 30S ribosomal protein 92.2 0.097 2.1E-06 33.7 1.7 29 59-97 19-47 (50)
353 PF05711 TylF: Macrocin-O-meth 92.1 0.17 3.6E-06 44.3 3.7 115 160-277 68-215 (248)
354 PF08792 A2L_zn_ribbon: A2L zi 92.1 0.12 2.6E-06 30.1 1.8 31 59-98 2-32 (33)
355 PF09297 zf-NADH-PPase: NADH p 92.0 0.1 2.2E-06 30.1 1.5 27 62-97 5-31 (32)
356 PTZ00357 methyltransferase; Pr 92.0 0.82 1.8E-05 45.4 8.4 100 169-269 703-830 (1072)
357 COG1062 AdhC Zn-dependent alco 92.0 1.8 4E-05 39.4 10.1 104 159-277 178-288 (366)
358 PLN02827 Alcohol dehydrogenase 91.8 1.6 3.4E-05 40.7 10.2 99 162-275 189-296 (378)
359 TIGR00686 phnA alkylphosphonat 91.7 0.11 2.4E-06 38.7 1.7 31 61-101 3-33 (109)
360 PRK05580 primosome assembly pr 91.6 3.1 6.7E-05 42.1 12.6 33 167-199 429-461 (679)
361 PRK00464 nrdR transcriptional 91.6 0.096 2.1E-06 42.3 1.5 40 61-100 1-41 (154)
362 cd08239 THR_DH_like L-threonin 91.6 1.9 4.2E-05 39.2 10.4 100 161-275 158-263 (339)
363 PLN03154 putative allyl alcoho 91.5 2.4 5.2E-05 39.0 10.9 99 161-275 153-259 (348)
364 PRK10220 hypothetical protein; 91.5 0.13 2.9E-06 38.3 2.0 32 60-101 3-34 (111)
365 COG0686 Ald Alanine dehydrogen 91.3 0.48 1E-05 42.5 5.6 100 166-273 167-267 (371)
366 smart00440 ZnF_C2C2 C2C2 Zinc 91.3 0.1 2.2E-06 31.8 1.1 37 61-97 1-38 (40)
367 KOG1227 Putative methyltransfe 91.2 0.16 3.4E-06 45.2 2.5 104 167-278 195-301 (351)
368 TIGR02300 FYDLN_acid conserved 91.2 0.13 2.7E-06 39.6 1.7 30 61-100 10-39 (129)
369 COG3809 Uncharacterized protei 91.1 0.11 2.4E-06 36.1 1.2 34 60-100 1-34 (88)
370 PRK01747 mnmC bifunctional tRN 91.0 0.57 1.2E-05 47.2 6.7 108 166-274 57-206 (662)
371 TIGR02818 adh_III_F_hyde S-(hy 90.9 2.7 5.8E-05 39.0 10.7 100 161-275 180-288 (368)
372 PF14446 Prok-RING_1: Prokaryo 90.8 0.14 3E-06 33.3 1.4 26 61-97 6-31 (54)
373 PF13248 zf-ribbon_3: zinc-rib 90.8 0.1 2.2E-06 28.6 0.6 23 61-96 3-25 (26)
374 COG4306 Uncharacterized protei 90.8 0.077 1.7E-06 40.4 0.2 44 58-101 37-82 (160)
375 PRK10309 galactitol-1-phosphat 90.5 2.8 6.1E-05 38.3 10.4 99 163-276 157-262 (347)
376 PF03119 DNA_ligase_ZBD: NAD-d 90.4 0.16 3.5E-06 28.4 1.2 22 62-92 1-22 (28)
377 smart00661 RPOL9 RNA polymeras 90.4 0.29 6.2E-06 31.5 2.7 34 62-102 2-35 (52)
378 PF01780 Ribosomal_L37ae: Ribo 90.4 0.11 2.4E-06 37.6 0.7 30 59-97 34-63 (90)
379 TIGR02825 B4_12hDH leukotriene 90.4 3.1 6.7E-05 37.6 10.4 98 160-274 132-237 (325)
380 TIGR02819 fdhA_non_GSH formald 90.2 4.5 9.8E-05 38.0 11.6 105 162-276 181-301 (393)
381 smart00659 RPOLCX RNA polymera 89.9 0.28 6E-06 30.6 2.1 28 60-97 2-29 (44)
382 cd08232 idonate-5-DH L-idonate 89.7 3.2 6.9E-05 37.7 10.0 94 166-274 165-262 (339)
383 cd08234 threonine_DH_like L-th 89.7 4.5 9.8E-05 36.5 10.9 100 161-275 154-258 (334)
384 PF07279 DUF1442: Protein of u 89.6 6.9 0.00015 33.4 10.9 112 156-275 31-149 (218)
385 COG2933 Predicted SAM-dependen 89.4 1.1 2.3E-05 39.4 6.0 87 165-267 210-296 (358)
386 cd08300 alcohol_DH_class_III c 89.4 4.5 9.6E-05 37.4 10.8 101 161-276 181-290 (368)
387 cd08277 liver_alcohol_DH_like 89.3 4.2 9.2E-05 37.5 10.6 99 162-275 180-287 (365)
388 PF07191 zinc-ribbons_6: zinc- 89.2 0.2 4.4E-06 34.4 1.2 26 61-97 2-27 (70)
389 cd08245 CAD Cinnamyl alcohol d 89.2 4.9 0.00011 36.2 10.8 97 162-274 158-256 (330)
390 COG0287 TyrA Prephenate dehydr 88.9 1.3 2.9E-05 39.5 6.5 93 167-274 3-98 (279)
391 PRK05476 S-adenosyl-L-homocyst 88.8 3.7 8E-05 39.0 9.7 89 166-276 211-301 (425)
392 PF03604 DNA_RNApol_7kD: DNA d 88.7 0.37 8.1E-06 27.8 1.9 27 61-97 1-27 (32)
393 COG1656 Uncharacterized conser 88.7 0.18 3.8E-06 40.8 0.8 40 58-97 95-140 (165)
394 TIGR00936 ahcY adenosylhomocys 88.7 3.9 8.5E-05 38.6 9.8 90 165-276 193-284 (406)
395 PF14353 CpXC: CpXC protein 88.7 0.2 4.3E-06 39.1 1.1 42 61-102 2-53 (128)
396 cd08301 alcohol_DH_plants Plan 88.7 7.1 0.00015 36.0 11.6 101 161-276 182-291 (369)
397 PF02150 RNA_POL_M_15KD: RNA p 88.6 0.22 4.7E-06 29.5 0.9 31 62-100 3-33 (35)
398 PF14205 Cys_rich_KTR: Cystein 88.6 0.34 7.4E-06 31.3 1.9 36 59-97 3-38 (55)
399 PF11899 DUF3419: Protein of u 88.5 0.89 1.9E-05 42.5 5.4 62 218-279 274-339 (380)
400 PF06677 Auto_anti-p27: Sjogre 88.3 0.31 6.8E-06 29.9 1.5 24 61-94 18-41 (41)
401 COG2888 Predicted Zn-ribbon RN 88.3 0.23 5E-06 32.7 0.9 36 57-96 24-59 (61)
402 COG3315 O-Methyltransferase in 88.3 2.4 5.2E-05 38.3 7.8 113 158-274 85-209 (297)
403 cd08298 CAD2 Cinnamyl alcohol 88.2 6.4 0.00014 35.4 10.9 95 160-274 161-256 (329)
404 PLN02586 probable cinnamyl alc 88.1 3 6.5E-05 38.5 8.7 96 164-275 181-279 (360)
405 TIGR03201 dearomat_had 6-hydro 88.0 5.9 0.00013 36.3 10.6 101 162-276 162-274 (349)
406 cd08285 NADP_ADH NADP(H)-depen 87.7 6.8 0.00015 35.8 10.8 99 162-275 162-267 (351)
407 cd08255 2-desacetyl-2-hydroxye 87.7 5.3 0.00012 35.0 9.8 96 162-274 93-190 (277)
408 KOG0022 Alcohol dehydrogenase, 87.6 7.2 0.00016 35.4 10.1 102 161-278 187-298 (375)
409 cd08294 leukotriene_B4_DH_like 87.5 7.4 0.00016 34.9 10.8 98 160-274 137-241 (329)
410 cd08242 MDR_like Medium chain 87.4 6.3 0.00014 35.3 10.3 95 161-274 150-245 (319)
411 PF05206 TRM13: Methyltransfer 87.4 2.3 5.1E-05 37.5 7.1 73 157-232 9-86 (259)
412 cd08238 sorbose_phosphate_red 87.3 6.7 0.00014 37.0 10.7 103 163-273 172-287 (410)
413 TIGR03655 anti_R_Lar restricti 87.3 0.42 9E-06 31.1 1.8 38 60-99 1-38 (53)
414 KOG3924 Putative protein methy 87.0 1.2 2.6E-05 41.3 5.1 121 155-277 181-311 (419)
415 PLN02494 adenosylhomocysteinas 87.0 3.1 6.8E-05 39.9 8.1 101 154-275 240-342 (477)
416 KOG1098 Putative SAM-dependent 86.9 6.1 0.00013 38.9 9.8 118 160-293 38-175 (780)
417 PTZ00255 60S ribosomal protein 86.8 0.31 6.7E-06 35.3 1.0 30 59-97 35-64 (90)
418 COG1326 Uncharacterized archae 86.7 0.28 6.1E-06 40.6 0.8 38 59-99 5-42 (201)
419 TIGR00280 L37a ribosomal prote 86.5 0.29 6.3E-06 35.5 0.7 30 59-97 34-63 (91)
420 PRK11524 putative methyltransf 86.4 0.37 7.9E-06 43.2 1.5 56 219-274 7-80 (284)
421 KOG0821 Predicted ribosomal RN 86.3 1.7 3.7E-05 37.1 5.3 72 154-230 38-109 (326)
422 COG0677 WecC UDP-N-acetyl-D-ma 86.3 3.5 7.5E-05 38.5 7.6 99 168-278 10-132 (436)
423 PRK05786 fabG 3-ketoacyl-(acyl 86.1 11 0.00025 31.9 10.8 104 166-276 4-137 (238)
424 COG0604 Qor NADPH:quinone redu 86.1 2.9 6.3E-05 38.3 7.3 106 158-277 134-244 (326)
425 PRK13699 putative methylase; P 86.1 0.37 7.9E-06 41.7 1.3 21 254-274 52-72 (227)
426 TIGR00518 alaDH alanine dehydr 86.1 1.3 2.9E-05 41.2 5.1 103 166-276 166-269 (370)
427 PF13453 zf-TFIIB: Transcripti 86.1 0.35 7.6E-06 29.6 0.8 29 62-97 1-29 (41)
428 COG3677 Transposase and inacti 86.1 0.44 9.6E-06 37.3 1.6 43 58-104 28-70 (129)
429 cd08231 MDR_TM0436_like Hypoth 86.0 9.9 0.00021 34.9 10.9 95 165-274 176-280 (361)
430 COG1779 C4-type Zn-finger prot 85.9 0.31 6.8E-06 40.5 0.7 41 57-97 11-53 (201)
431 PF01927 Mut7-C: Mut7-C RNAse 85.8 0.45 9.7E-06 38.2 1.6 38 60-97 91-134 (147)
432 PF04606 Ogr_Delta: Ogr/Delta- 85.6 0.36 7.9E-06 30.5 0.8 39 62-101 1-41 (47)
433 COG1086 Predicted nucleoside-d 85.5 5.7 0.00012 38.8 9.0 82 166-251 249-339 (588)
434 PRK12939 short chain dehydroge 85.5 5.8 0.00012 34.0 8.6 75 166-246 6-93 (250)
435 KOG2906 RNA polymerase III sub 85.2 0.44 9.6E-06 34.8 1.1 36 60-102 1-36 (105)
436 COG3877 Uncharacterized protei 85.1 0.49 1.1E-05 35.0 1.3 25 59-96 5-29 (122)
437 PRK07109 short chain dehydroge 85.0 12 0.00026 34.2 10.8 75 166-246 7-94 (334)
438 PRK03976 rpl37ae 50S ribosomal 85.0 0.36 7.8E-06 35.0 0.6 30 59-97 35-64 (90)
439 KOG3507 DNA-directed RNA polym 84.9 0.58 1.3E-05 30.7 1.5 31 57-97 17-47 (62)
440 PF14354 Lar_restr_allev: Rest 84.9 0.58 1.3E-05 31.2 1.6 36 59-95 2-37 (61)
441 PRK07806 short chain dehydroge 84.8 12 0.00027 32.0 10.4 102 167-274 6-134 (248)
442 PF05050 Methyltransf_21: Meth 84.7 3.2 6.9E-05 33.2 6.2 38 172-209 1-42 (167)
443 smart00531 TFIIE Transcription 84.6 0.46 1E-05 38.1 1.1 40 55-97 94-133 (147)
444 COG1571 Predicted DNA-binding 84.6 0.54 1.2E-05 43.9 1.7 32 60-101 350-381 (421)
445 PHA02998 RNA polymerase subuni 84.2 0.51 1.1E-05 38.4 1.2 42 59-100 142-184 (195)
446 PLN02178 cinnamyl-alcohol dehy 84.2 4 8.7E-05 38.0 7.4 93 165-275 177-274 (375)
447 cd05285 sorbitol_DH Sorbitol d 84.1 13 0.00028 33.8 10.7 101 160-275 156-266 (343)
448 smart00834 CxxC_CXXC_SSSS Puta 83.9 0.73 1.6E-05 27.9 1.6 33 57-95 2-34 (41)
449 PLN02514 cinnamyl-alcohol dehy 83.7 8.8 0.00019 35.3 9.5 97 165-276 179-277 (357)
450 cd08295 double_bond_reductase_ 83.7 12 0.00025 34.1 10.2 99 160-274 145-251 (338)
451 PRK06701 short chain dehydroge 83.6 9.8 0.00021 33.9 9.5 104 166-275 45-182 (290)
452 PRK05854 short chain dehydroge 83.6 16 0.00035 32.9 11.0 78 166-247 13-103 (313)
453 cd08293 PTGR2 Prostaglandin re 83.6 15 0.00032 33.4 10.8 92 168-274 156-254 (345)
454 TIGR00244 transcriptional regu 83.4 0.63 1.4E-05 37.0 1.4 43 61-103 1-44 (147)
455 cd05278 FDH_like Formaldehyde 83.3 9.9 0.00021 34.5 9.6 97 163-274 164-267 (347)
456 PRK08265 short chain dehydroge 83.3 9 0.0002 33.4 9.0 72 166-246 5-89 (261)
457 PF10354 DUF2431: Domain of un 83.3 6.5 0.00014 32.2 7.4 109 173-287 3-137 (166)
458 cd08233 butanediol_DH_like (2R 83.2 25 0.00054 32.0 12.2 99 161-276 167-274 (351)
459 COG1327 Predicted transcriptio 83.2 0.58 1.3E-05 37.2 1.1 43 61-103 1-44 (156)
460 PF10237 N6-adenineMlase: Prob 83.1 9.6 0.00021 31.1 8.2 105 153-274 10-123 (162)
461 PRK07819 3-hydroxybutyryl-CoA 83.1 2.4 5.1E-05 38.1 5.2 99 168-274 6-121 (286)
462 PF11899 DUF3419: Protein of u 83.0 4.9 0.00011 37.6 7.3 53 157-211 26-78 (380)
463 PRK07576 short chain dehydroge 82.9 11 0.00024 32.9 9.4 59 166-230 8-69 (264)
464 cd08261 Zn_ADH7 Alcohol dehydr 82.9 13 0.00028 33.6 10.2 98 161-274 154-258 (337)
465 COG1594 RPB9 DNA-directed RNA 82.8 0.81 1.8E-05 34.9 1.8 46 52-97 64-110 (113)
466 PRK14890 putative Zn-ribbon RN 82.8 0.69 1.5E-05 30.6 1.2 35 58-96 23-57 (59)
467 cd08278 benzyl_alcohol_DH Benz 82.7 12 0.00025 34.6 9.9 99 162-275 182-286 (365)
468 PF09986 DUF2225: Uncharacteri 82.7 0.67 1.4E-05 39.7 1.4 29 240-268 167-196 (214)
469 PF02153 PDH: Prephenate dehyd 82.6 1.6 3.4E-05 38.5 3.8 79 180-274 1-79 (258)
470 PF00145 DNA_methylase: C-5 cy 82.5 2 4.3E-05 38.8 4.5 65 169-245 2-69 (335)
471 cd05281 TDH Threonine dehydrog 82.2 13 0.00028 33.8 9.9 95 165-274 162-262 (341)
472 PRK06181 short chain dehydroge 82.0 11 0.00024 32.7 9.0 73 168-246 2-87 (263)
473 PRK06266 transcription initiat 82.0 0.61 1.3E-05 38.7 0.9 34 55-96 112-145 (178)
474 PRK08324 short chain dehydroge 82.0 13 0.00027 37.8 10.4 103 166-275 421-558 (681)
475 KOG2691 RNA polymerase II subu 81.9 0.95 2.1E-05 33.7 1.7 39 59-97 72-111 (113)
476 COG0863 DNA modification methy 81.7 6.9 0.00015 34.9 7.8 59 152-213 209-267 (302)
477 cd08296 CAD_like Cinnamyl alco 81.7 18 0.00038 32.8 10.5 98 162-275 159-260 (333)
478 COG1255 Uncharacterized protei 81.6 5.6 0.00012 30.3 5.8 89 167-277 14-105 (129)
479 TIGR00373 conserved hypothetic 81.6 0.74 1.6E-05 37.4 1.3 34 55-96 104-137 (158)
480 PRK06035 3-hydroxyacyl-CoA deh 81.5 4.8 0.0001 36.0 6.6 41 168-210 4-46 (291)
481 cd05279 Zn_ADH1 Liver alcohol 81.4 21 0.00045 32.9 11.0 100 161-275 178-286 (365)
482 cd08236 sugar_DH NAD(P)-depend 81.2 19 0.00042 32.6 10.6 98 161-274 154-258 (343)
483 cd08263 Zn_ADH10 Alcohol dehyd 81.0 27 0.00059 32.1 11.7 95 165-274 186-287 (367)
484 PF07754 DUF1610: Domain of un 80.9 1.3 2.8E-05 23.7 1.6 9 86-94 15-23 (24)
485 TIGR03831 YgiT_finger YgiT-typ 80.7 0.93 2E-05 28.1 1.2 13 86-98 31-43 (46)
486 PF02254 TrkA_N: TrkA-N domain 80.7 17 0.00036 27.2 8.5 88 171-275 2-97 (116)
487 KOG2906 RNA polymerase III sub 80.6 0.52 1.1E-05 34.4 0.0 41 57-97 62-103 (105)
488 cd08265 Zn_ADH3 Alcohol dehydr 80.6 19 0.00041 33.5 10.6 97 163-274 200-307 (384)
489 PRK05808 3-hydroxybutyryl-CoA 80.5 8.4 0.00018 34.3 7.8 98 169-274 5-118 (282)
490 PRK10083 putative oxidoreducta 80.4 20 0.00043 32.4 10.4 97 161-275 155-260 (339)
491 KOG2782 Putative SAM dependent 80.4 0.65 1.4E-05 39.5 0.5 92 154-248 31-129 (303)
492 PRK08306 dipicolinate synthase 80.3 12 0.00027 33.6 8.8 92 166-276 151-243 (296)
493 PF04072 LCM: Leucine carboxyl 80.1 4.3 9.4E-05 33.6 5.4 94 157-251 68-171 (183)
494 COG4098 comFA Superfamily II D 80.1 36 0.00078 31.4 11.3 118 152-276 103-242 (441)
495 smart00778 Prim_Zn_Ribbon Zinc 79.8 1.7 3.8E-05 25.9 2.1 30 61-95 4-33 (37)
496 PRK14892 putative transcriptio 79.8 1.4 3.1E-05 32.7 2.1 33 59-97 20-52 (99)
497 cd08240 6_hydroxyhexanoate_dh_ 79.5 22 0.00049 32.3 10.5 92 166-274 175-274 (350)
498 PF07282 OrfB_Zn_ribbon: Putat 79.5 1.2 2.6E-05 30.5 1.6 29 60-97 28-56 (69)
499 TIGR01385 TFSII transcription 79.5 1.1 2.3E-05 40.4 1.6 41 57-97 255-296 (299)
500 PF03811 Zn_Tnp_IS1: InsA N-te 79.4 2.1 4.6E-05 25.4 2.4 31 60-94 5-36 (36)
No 1
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.93 E-value=9.4e-26 Score=193.58 Aligned_cols=133 Identities=30% Similarity=0.446 Sum_probs=120.6
Q ss_pred ChhhHHHHHHhHHHhcccCCCCCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHH
Q 021344 128 SPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCY 207 (314)
Q Consensus 128 ~~~~s~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~ 207 (314)
|+.+|++.++.|++. +.+.+...+|.+|||+|||||.++..+++.....+|+|+|+|+.|++.|+
T Consensus 28 n~~~S~g~~~~Wr~~---------------~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~ 92 (238)
T COG2226 28 NDLMSFGLHRLWRRA---------------LISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAR 92 (238)
T ss_pred cccccCcchHHHHHH---------------HHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHH
Confidence 789999999999984 33344445799999999999999999999976789999999999999999
Q ss_pred HHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344 208 DFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (314)
Q Consensus 208 ~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~ 278 (314)
++....+. .+++|+++|++++||++++||+|++.++|++++|++++|+|++|+|||||++++.+.+.+
T Consensus 93 ~k~~~~~~---~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p 160 (238)
T COG2226 93 EKLKKKGV---QNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP 160 (238)
T ss_pred HHhhccCc---cceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 99988763 449999999999999999999999999999999999999999999999999999998765
No 2
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.92 E-value=9.9e-25 Score=194.38 Aligned_cols=177 Identities=22% Similarity=0.427 Sum_probs=126.1
Q ss_pred eeeccCCCccchhcCCCCccccccccCceecCCCCccccCccceeeeecccCccCcccccccccccccChhhHHHHHHhH
Q 021344 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGW 139 (314)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~~~~~~~s~~~~~~w 139 (314)
+|+||+|++++.... ..++|.+++++...++||+++++.......... ...+++..
T Consensus 2 ~~~CP~C~~~l~~~~-----------~~~~C~~~h~fd~a~~Gy~~ll~~~~~~~~~~~--d~~~~~~a----------- 57 (272)
T PRK11088 2 SYQCPLCHQPLTLEE-----------NSWICPQNHQFDCAKEGYVNLLPVQHKRSKDPG--DNKEMMQA----------- 57 (272)
T ss_pred cccCCCCCcchhcCC-----------CEEEcCCCCCCccccCceEEeccccccCCCCCC--cCHHHHHH-----------
Confidence 489999999996533 579999966666999999999975332221110 11122221
Q ss_pred HHhcccCCCCCc--hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCC---CeEEEEeCCHHHHHHHHHHHHhcC
Q 021344 140 RQNFNRSGFPGP--DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY---SGVVALDFSENMLRQCYDFIKQDN 214 (314)
Q Consensus 140 ~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~---~~v~giD~s~~~~~~a~~~~~~~~ 214 (314)
++.|.+.+++.+ +...+.+.+.+. ....+|||+|||+|.++..+++..+. .+++|+|+|+.+++.|+++
T Consensus 58 r~~fl~~g~y~~l~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~----- 131 (272)
T PRK11088 58 RRAFLDAGHYQPLRDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR----- 131 (272)
T ss_pred HHHHHHCCChHHHHHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----
Confidence 334444443222 122234444443 34578999999999999999876532 3799999999999999874
Q ss_pred CCCCCCeEEEEecCCCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 215 TILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 215 ~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
..++.+..+|+.++|+++++||+|++... ...++++.|+|||||++++.++.
T Consensus 132 ---~~~~~~~~~d~~~lp~~~~sfD~I~~~~~-------~~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 132 ---YPQVTFCVASSHRLPFADQSLDAIIRIYA-------PCKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred ---CCCCeEEEeecccCCCcCCceeEEEEecC-------CCCHHHHHhhccCCCEEEEEeCC
Confidence 25788999999999999999999998654 12468999999999999998844
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.91 E-value=2.2e-24 Score=186.84 Aligned_cols=133 Identities=30% Similarity=0.534 Sum_probs=92.9
Q ss_pred ChhhHHHHHHhHHHhcccCCCCCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHH
Q 021344 128 SPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQC 206 (314)
Q Consensus 128 ~~~~s~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a 206 (314)
|...|++.++.|++. +.+.+...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.|++.|
T Consensus 24 n~~ls~g~~~~wr~~---------------~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a 88 (233)
T PF01209_consen 24 NDLLSFGQDRRWRRK---------------LIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVA 88 (233)
T ss_dssp -------------SH---------------HHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHH
T ss_pred ccccCCcHHHHHHHH---------------HHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHH
Confidence 678899999999973 344556677889999999999999999886 4567999999999999999
Q ss_pred HHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344 207 YDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (314)
Q Consensus 207 ~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~ 278 (314)
+++.+..+. .+++++++|++++|+++++||+|++.+++++++|+.+.++|++|+|||||++++.+++.+
T Consensus 89 ~~k~~~~~~---~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p 157 (233)
T PF01209_consen 89 RKKLKREGL---QNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKP 157 (233)
T ss_dssp HHHHHHTT-----SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-
T ss_pred HHHHHhhCC---CCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCC
Confidence 999988752 599999999999999999999999999999999999999999999999999999998764
No 4
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.86 E-value=2.2e-21 Score=163.79 Aligned_cols=136 Identities=23% Similarity=0.284 Sum_probs=120.7
Q ss_pred ChhhHHHHHHhHHHhcccCCCCCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCC------CeEEEEeCCHH
Q 021344 128 SPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY------SGVVALDFSEN 201 (314)
Q Consensus 128 ~~~~s~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~------~~v~giD~s~~ 201 (314)
|+.+|.+.++.|+.. ....+.+.++.++||++||||..+..+.++-.. .+|+++|+++.
T Consensus 77 ND~mSlGiHRlWKd~---------------~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~ 141 (296)
T KOG1540|consen 77 NDAMSLGIHRLWKDM---------------FVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPH 141 (296)
T ss_pred HHHhhcchhHHHHHH---------------hhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHH
Confidence 889999999999874 444777788899999999999999888887443 69999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344 202 MLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (314)
Q Consensus 202 ~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~ 278 (314)
|+..++++.++.++.....+.++.+|++++||++++||..++.+.|.+++++++.|++++|+|||||++.+.+++..
T Consensus 142 mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv 218 (296)
T KOG1540|consen 142 MLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKV 218 (296)
T ss_pred HHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEcccc
Confidence 99999999877654333459999999999999999999999999999999999999999999999999999998764
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.86 E-value=4e-21 Score=169.90 Aligned_cols=120 Identities=23% Similarity=0.361 Sum_probs=102.2
Q ss_pred HHHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCc
Q 021344 159 QEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF 237 (314)
Q Consensus 159 ~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~ 237 (314)
.+.+...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.|++.|+++..........+++++++|++++|+++++
T Consensus 66 ~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~s 145 (261)
T PLN02233 66 VSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCY 145 (261)
T ss_pred HHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCC
Confidence 34555667889999999999999988876 45569999999999999998865421100235899999999999999999
Q ss_pred hhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344 238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (314)
Q Consensus 238 fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~ 278 (314)
||+|++.++++|++|+..+++++.|+|||||++++.++...
T Consensus 146 fD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~ 186 (261)
T PLN02233 146 FDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKS 186 (261)
T ss_pred EeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCC
Confidence 99999999999999999999999999999999999998754
No 6
>PLN02244 tocopherol O-methyltransferase
Probab=99.83 E-value=1.1e-19 Score=166.68 Aligned_cols=120 Identities=22% Similarity=0.298 Sum_probs=104.7
Q ss_pred HHHHHHHhcc-----CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q 021344 155 FKMAQEYFKS-----AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229 (314)
Q Consensus 155 ~~~l~~~l~~-----~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~ 229 (314)
.+.+.+.+.. .++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.++++.+..+ ...++.++.+|+.
T Consensus 102 ~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g--~~~~v~~~~~D~~ 178 (340)
T PLN02244 102 IEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQG--LSDKVSFQVADAL 178 (340)
T ss_pred HHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEcCcc
Confidence 3344444444 567899999999999999999875 4599999999999999999887765 3467999999999
Q ss_pred CCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344 230 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 230 ~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
++|+++++||+|++..+++|++|+..+++++.++|||||++++.++..
T Consensus 179 ~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~ 226 (340)
T PLN02244 179 NQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCH 226 (340)
T ss_pred cCCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 999999999999999999999999999999999999999999988654
No 7
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.83 E-value=9.2e-21 Score=160.11 Aligned_cols=108 Identities=26% Similarity=0.403 Sum_probs=99.2
Q ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (314)
Q Consensus 165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~ 244 (314)
-++.+|||||||.|.++..+++.|. +|+|+|+++..++.|+....+.+ ..+++.+.+++++....++||+|+|.
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga--~VtgiD~se~~I~~Ak~ha~e~g----v~i~y~~~~~edl~~~~~~FDvV~cm 131 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA--SVTGIDASEKPIEVAKLHALESG----VNIDYRQATVEDLASAGGQFDVVTCM 131 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC--eeEEecCChHHHHHHHHhhhhcc----ccccchhhhHHHHHhcCCCccEEEEh
Confidence 3688999999999999999999996 99999999999999999888766 45778888888877666899999999
Q ss_pred chhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344 245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (314)
Q Consensus 245 ~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~ 278 (314)
.||||++||..+++.+.+.+||||.+++++.++.
T Consensus 132 EVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 132 EVLEHVPDPESFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred hHHHccCCHHHHHHHHHHHcCCCcEEEEeccccC
Confidence 9999999999999999999999999999998865
No 8
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.82 E-value=4.1e-20 Score=137.57 Aligned_cols=95 Identities=34% Similarity=0.579 Sum_probs=84.4
Q ss_pred EEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecchhccC
Q 021344 171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCW 250 (314)
Q Consensus 171 LDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~ 250 (314)
||+|||+|.++..+++. +..+++++|+++.+++.++++... .++.+..+|++++|+++++||+|++..+++|+
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN------EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL 73 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT------STEEEEESBTTSSSS-TT-EEEEEEESHGGGS
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc------cCchheeehHHhCccccccccccccccceeec
Confidence 89999999999999999 345999999999999999998754 45679999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhcccCcEEEE
Q 021344 251 PSPSNAVAEISRILRSGGVFVG 272 (314)
Q Consensus 251 ~d~~~~l~~i~r~LkpGG~l~i 272 (314)
.++.++++++.|+|||||++++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999999986
No 9
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.80 E-value=2.1e-19 Score=162.36 Aligned_cols=108 Identities=22% Similarity=0.314 Sum_probs=96.7
Q ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~ 245 (314)
++.+|||||||+|.++..+++.+. +|+|+|+++.+++.|+++....+ ...++.++++|++++++.+++||+|++.+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~--~V~GID~s~~~i~~Ar~~~~~~~--~~~~i~~~~~dae~l~~~~~~FD~Vi~~~ 206 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGA--TVTGVDAVDKNVKIARLHADMDP--VTSTIEYLCTTAEKLADEGRKFDAVLSLE 206 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--cccceeEEecCHHHhhhccCCCCEEEEhh
Confidence 567999999999999999988765 99999999999999998765543 23589999999999888888999999999
Q ss_pred hhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344 246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 246 vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
+|||+.|+..+++++.++|||||.+++.+..+
T Consensus 207 vLeHv~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 207 VIEHVANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred HHHhcCCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 99999999999999999999999999998654
No 10
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.79 E-value=1.1e-18 Score=151.94 Aligned_cols=119 Identities=29% Similarity=0.430 Sum_probs=104.6
Q ss_pred HHHHHHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC
Q 021344 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (314)
Q Consensus 156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~ 234 (314)
+.+.+.+...++.+|||+|||+|.++..+++. ++..+++|+|+++.+++.++++.+..+ ..+++++.+|+..++++
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~ 111 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG---LHNVELVHGNAMELPFD 111 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC---CCceEEEEechhcCCCC
Confidence 35556677777889999999999999999877 455699999999999999999887654 26899999999988888
Q ss_pred CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
+++||+|++..+++|++++..+++++.++|||||++++.+...
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 154 (231)
T TIGR02752 112 DNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQ 154 (231)
T ss_pred CCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 8899999999999999999999999999999999999887544
No 11
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.78 E-value=1.6e-18 Score=141.14 Aligned_cols=107 Identities=22% Similarity=0.464 Sum_probs=96.6
Q ss_pred CCCeEEEEcCcccHHHHHHH-HhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--CCCCchhhhe
Q 021344 166 QGGLLVDVSCGSGLFSRKFA-KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVH 242 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~-~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--~~~~~fD~V~ 242 (314)
++.+|||+|||+|.++..++ ..++..+++|+|+|+.+++.|+++++..+. .+++++++|+.+++ ++ ++||+|+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~---~ni~~~~~d~~~l~~~~~-~~~D~I~ 78 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL---DNIEFIQGDIEDLPQELE-EKFDIII 78 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS---TTEEEEESBTTCGCGCSS-TTEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc---cccceEEeehhccccccC-CCeeEEE
Confidence 57799999999999999999 456677999999999999999999888763 58999999999977 55 7899999
Q ss_pred ecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 243 ~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
+..+++|+.++..+++++.++||+||.+++..+.
T Consensus 79 ~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999999999999999999999999999998865
No 12
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.78 E-value=1.8e-18 Score=152.85 Aligned_cols=109 Identities=20% Similarity=0.191 Sum_probs=96.4
Q ss_pred HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCC
Q 021344 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236 (314)
Q Consensus 157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~ 236 (314)
.+.+.+...++.+|||||||+|.++..+++..+..+|+|+|+|+.+++.|++ .+++++.+|++.++ +++
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~----------~~~~~~~~d~~~~~-~~~ 88 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE----------RGVDARTGDVRDWK-PKP 88 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh----------cCCcEEEcChhhCC-CCC
Confidence 4556666677889999999999999999998766799999999999999976 46889999998775 467
Q ss_pred chhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 237 ~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
+||+|++..++||++|+..+++++.++|||||++++..+.
T Consensus 89 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 89 DTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred CceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 8999999999999999999999999999999999987643
No 13
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.77 E-value=3.9e-18 Score=150.98 Aligned_cols=124 Identities=13% Similarity=0.144 Sum_probs=106.9
Q ss_pred CCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 021344 149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV 228 (314)
Q Consensus 149 ~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~ 228 (314)
++..+....+.+.+...++.+|||||||+|..+..+++.. ..+|+|+|+|+.+++.++++... ..++.+..+|+
T Consensus 35 ~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~-----~~~i~~~~~D~ 108 (263)
T PTZ00098 35 SGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD-----KNKIEFEANDI 108 (263)
T ss_pred CCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc-----CCceEEEECCc
Confidence 4445556777778888889999999999999999887754 45999999999999999987653 25799999999
Q ss_pred CCCCCCCCchhhheecchhccCC--CHHHHHHHHHhhcccCcEEEEEecccC
Q 021344 229 CRLPFASGFVDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRY 278 (314)
Q Consensus 229 ~~lp~~~~~fD~V~~~~vl~h~~--d~~~~l~~i~r~LkpGG~l~i~~~~~~ 278 (314)
...|+++++||+|++..+++|++ ++..+++++.++|||||++++.++...
T Consensus 109 ~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~ 160 (263)
T PTZ00098 109 LKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCAD 160 (263)
T ss_pred ccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 98888889999999999999987 788999999999999999999887653
No 14
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.77 E-value=1.2e-18 Score=134.14 Aligned_cols=106 Identities=27% Similarity=0.426 Sum_probs=88.9
Q ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC-CCCCCCCCchhhheec
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLPFASGFVDAVHAG 244 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~-~~lp~~~~~fD~V~~~ 244 (314)
|+.+|||+|||+|.++..+++..+..+++|+|+|+.+++.++++....+ ...+++++++|+ ..... .+.||+|++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~-~~~~D~v~~~ 77 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG--LSDRITFVQGDAEFDPDF-LEPFDLVICS 77 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT--TTTTEEEEESCCHGGTTT-SSCEEEEEEC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEECccccCccc-CCCCCEEEEC
Confidence 4789999999999999999996556699999999999999999995544 458999999999 33333 3569999999
Q ss_pred c-hhccCC---CHHHHHHHHHhhcccCcEEEEEe
Q 021344 245 A-ALHCWP---SPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 245 ~-vl~h~~---d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
. .++++. +...+++++.+.|+|||++++.+
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 8 555443 45789999999999999999976
No 15
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.77 E-value=3.2e-18 Score=151.19 Aligned_cols=115 Identities=17% Similarity=0.256 Sum_probs=99.3
Q ss_pred HHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-CCCC
Q 021344 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASG 236 (314)
Q Consensus 158 l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-~~~~ 236 (314)
+.+.+. .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++....+ ...+++++++|+.+++ +.++
T Consensus 37 ~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~--~v~~vD~s~~~l~~a~~~~~~~g--~~~~v~~~~~d~~~l~~~~~~ 111 (255)
T PRK11036 37 LLAELP-PRPLRVLDAGGGEGQTAIKLAELGH--QVILCDLSAEMIQRAKQAAEAKG--VSDNMQFIHCAAQDIAQHLET 111 (255)
T ss_pred HHHhcC-CCCCEEEEeCCCchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC--CccceEEEEcCHHHHhhhcCC
Confidence 344444 3567999999999999999999875 99999999999999999988765 3467999999987763 5578
Q ss_pred chhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344 237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 237 ~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
+||+|++..+++|+.++..+++++.++|||||++++..++.
T Consensus 112 ~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 112 PVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred CCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 99999999999999999999999999999999999877553
No 16
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.75 E-value=1.1e-17 Score=147.41 Aligned_cols=114 Identities=27% Similarity=0.378 Sum_probs=99.1
Q ss_pred HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (314)
Q Consensus 154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~ 233 (314)
..+.+.+.+...++.+|||+|||+|.++..+++.+. +++++|+|+.+++.++++. ....++.+|++.+|+
T Consensus 30 ~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~~D~s~~~l~~a~~~~--------~~~~~~~~d~~~~~~ 99 (251)
T PRK10258 30 SADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGS--QVTALDLSPPMLAQARQKD--------AADHYLAGDIESLPL 99 (251)
T ss_pred HHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhC--------CCCCEEEcCcccCcC
Confidence 344566666665678999999999999999988764 9999999999999998853 235688999999999
Q ss_pred CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
++++||+|+++.+++|..|+..+++++.++|||||.+++.++..
T Consensus 100 ~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 100 ATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred CCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 88899999999999999999999999999999999999998654
No 17
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.75 E-value=1.9e-18 Score=147.08 Aligned_cols=106 Identities=31% Similarity=0.455 Sum_probs=91.6
Q ss_pred CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCC----CeEEEEecCCCCCCCCCchhhhe
Q 021344 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS----NLALVRADVCRLPFASGFVDAVH 242 (314)
Q Consensus 167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~----~v~~~~~d~~~lp~~~~~fD~V~ 242 (314)
+.+|||+|||+|.++..|++.|. +|+|+|+++++++.|++...... .... ++++.+.|++.+. +.||+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga--~V~GID~s~~~V~vA~~h~~~dP-~~~~~~~y~l~~~~~~~E~~~---~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA--QVTGIDASDDMVEVANEHKKMDP-VLEGAIAYRLEYEDTDVEGLT---GKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhCC--eeEeecccHHHHHHHHHhhhcCc-hhccccceeeehhhcchhhcc---cccceee
Confidence 57899999999999999999987 99999999999999999844433 2233 3677777777653 4599999
Q ss_pred ecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344 243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (314)
Q Consensus 243 ~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~ 278 (314)
|..|+||+.||+.++..+.++|||||.+++++..+.
T Consensus 164 csevleHV~dp~~~l~~l~~~lkP~G~lfittinrt 199 (282)
T KOG1270|consen 164 CSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRT 199 (282)
T ss_pred eHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhh
Confidence 999999999999999999999999999999998774
No 18
>PRK05785 hypothetical protein; Provisional
Probab=99.75 E-value=1.6e-17 Score=143.79 Aligned_cols=90 Identities=32% Similarity=0.358 Sum_probs=81.5
Q ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~ 245 (314)
++.+|||+|||+|.++..+++.+ ..+|+|+|+|++|++.|+++ ..++++|++.+|+++++||+|++.+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~-----------~~~~~~d~~~lp~~d~sfD~v~~~~ 118 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA-----------DDKVVGSFEALPFRDKSFDVVMSSF 118 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc-----------cceEEechhhCCCCCCCEEEEEecC
Confidence 36799999999999999999885 34999999999999999862 2357899999999999999999999
Q ss_pred hhccCCCHHHHHHHHHhhcccC
Q 021344 246 ALHCWPSPSNAVAEISRILRSG 267 (314)
Q Consensus 246 vl~h~~d~~~~l~~i~r~LkpG 267 (314)
+++|++|+..+++++.|+|||.
T Consensus 119 ~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 119 ALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred hhhccCCHHHHHHHHHHHhcCc
Confidence 9999999999999999999994
No 19
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.74 E-value=2.2e-17 Score=149.99 Aligned_cols=118 Identities=23% Similarity=0.276 Sum_probs=98.1
Q ss_pred HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC
Q 021344 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (314)
Q Consensus 155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~ 234 (314)
.+.+...+....+.+|||||||+|.++..++..++. .|+|+|+|+.++..++......+ ...++.++.+|++++|+
T Consensus 111 ~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~--~~~~i~~~~~d~e~lp~- 186 (322)
T PRK15068 111 WDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLG--NDQRAHLLPLGIEQLPA- 186 (322)
T ss_pred HHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcC--CCCCeEEEeCCHHHCCC-
Confidence 345566676567889999999999999999998753 69999999998876544322221 12579999999999998
Q ss_pred CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
+++||+|++..+++|+.++..++++++++|||||.+++.+..
T Consensus 187 ~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~ 228 (322)
T PRK15068 187 LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLV 228 (322)
T ss_pred cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEE
Confidence 788999999999999999999999999999999999997654
No 20
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.74 E-value=3.6e-17 Score=138.83 Aligned_cols=112 Identities=23% Similarity=0.273 Sum_probs=94.1
Q ss_pred HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCC
Q 021344 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236 (314)
Q Consensus 157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~ 236 (314)
.+.+.+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++....+. .++++..+|+...++. +
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~--~V~gvD~S~~~i~~a~~~~~~~~~---~~v~~~~~d~~~~~~~-~ 94 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGF--DVTAWDKNPMSIANLERIKAAENL---DNLHTAVVDLNNLTFD-G 94 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHcCC---CcceEEecChhhCCcC-C
Confidence 344455555678999999999999999999876 999999999999999998887652 5688999999877764 5
Q ss_pred chhhheecchhccCC--CHHHHHHHHHhhcccCcEEEEEe
Q 021344 237 FVDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 237 ~fD~V~~~~vl~h~~--d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
+||+|++..+++|++ +...+++++.++|||||++++..
T Consensus 95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 95 EYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred CcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 799999999999886 45689999999999999965543
No 21
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.73 E-value=6e-17 Score=155.48 Aligned_cols=120 Identities=18% Similarity=0.206 Sum_probs=104.5
Q ss_pred HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (314)
Q Consensus 154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~ 233 (314)
..+.+.+.+...++.+|||||||+|..+..+++.. +.+++|+|+|+.+++.|+++.... ..++.+..+|+...++
T Consensus 254 ~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~----~~~v~~~~~d~~~~~~ 328 (475)
T PLN02336 254 TTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGR----KCSVEFEVADCTKKTY 328 (475)
T ss_pred HHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcC----CCceEEEEcCcccCCC
Confidence 45566666666678899999999999999888865 459999999999999999876533 3579999999998888
Q ss_pred CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (314)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~ 278 (314)
++++||+|++..+++|++|+..++++++++|||||.+++.++...
T Consensus 329 ~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 373 (475)
T PLN02336 329 PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRS 373 (475)
T ss_pred CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence 888999999999999999999999999999999999999987654
No 22
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.73 E-value=1.1e-16 Score=140.10 Aligned_cols=119 Identities=17% Similarity=0.165 Sum_probs=107.2
Q ss_pred HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC
Q 021344 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (314)
Q Consensus 155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~ 234 (314)
.+.+.+.+...+|.+|||||||.|.++..+++.+ +.+|+|+++|+++.+.++++++..++ ..++++...|..++.
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl--~~~v~v~l~d~rd~~-- 135 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGL--EDNVEVRLQDYRDFE-- 135 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCC--CcccEEEeccccccc--
Confidence 5677888899999999999999999999999997 66999999999999999999999984 478999999987764
Q ss_pred CCchhhheecchhccCCC--HHHHHHHHHhhcccCcEEEEEecccCC
Q 021344 235 SGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYT 279 (314)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d--~~~~l~~i~r~LkpGG~l~i~~~~~~~ 279 (314)
+.||-|++..++||+.. ...+++.+.++|+|||++++.+.....
T Consensus 136 -e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 136 -EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred -cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 45999999999999986 789999999999999999998877654
No 23
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.72 E-value=7e-17 Score=145.38 Aligned_cols=117 Identities=21% Similarity=0.205 Sum_probs=94.9
Q ss_pred HHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC
Q 021344 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (314)
Q Consensus 156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~ 235 (314)
..+...+...++++|||||||+|.++..++..++ ..|+|+|+|+.++..++...+... ...++.+..+++++++..
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~--~~~~v~~~~~~ie~lp~~- 186 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLD--NDKRAILEPLGIEQLHEL- 186 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhc--cCCCeEEEECCHHHCCCC-
Confidence 3455566666788999999999999999988875 379999999999876543222111 125788888999888754
Q ss_pred CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
++||+|++.++++|+.+|..+|++++++|||||.|++.+..
T Consensus 187 ~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~ 227 (314)
T TIGR00452 187 YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLV 227 (314)
T ss_pred CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEE
Confidence 47999999999999999999999999999999999998754
No 24
>PRK08317 hypothetical protein; Provisional
Probab=99.72 E-value=1.1e-16 Score=139.45 Aligned_cols=118 Identities=33% Similarity=0.432 Sum_probs=103.1
Q ss_pred HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (314)
Q Consensus 155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~ 233 (314)
.+.+.+.+...++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.++++.... ..++.+..+|+...++
T Consensus 8 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~ 83 (241)
T PRK08317 8 RARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL----GPNVEFVRGDADGLPF 83 (241)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC----CCceEEEecccccCCC
Confidence 3455666777788999999999999999998875 5679999999999999999873332 3689999999988888
Q ss_pred CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
.+++||+|++..+++|+.++..+++++.++|||||.+++.++.
T Consensus 84 ~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 84 PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred CCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 8889999999999999999999999999999999999998754
No 25
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.72 E-value=6.3e-17 Score=143.14 Aligned_cols=111 Identities=19% Similarity=0.281 Sum_probs=96.4
Q ss_pred HHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC
Q 021344 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (314)
Q Consensus 156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~ 235 (314)
+.+...+...++.+|||||||+|.++..+++..+..+|+|+|+|+.+++.++++. .++.++.+|+..+. .+
T Consensus 21 ~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~--------~~~~~~~~d~~~~~-~~ 91 (258)
T PRK01683 21 RDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL--------PDCQFVEADIASWQ-PP 91 (258)
T ss_pred HHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC--------CCCeEEECchhccC-CC
Confidence 3455566666788999999999999999998876779999999999999998853 56889999997764 35
Q ss_pred CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344 236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
++||+|+++.+++|++|+..+++++.++|||||.+++..+
T Consensus 92 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 92 QALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred CCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence 6899999999999999999999999999999999999753
No 26
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.72 E-value=1.9e-16 Score=139.19 Aligned_cols=125 Identities=17% Similarity=0.274 Sum_probs=99.9
Q ss_pred CCchHHHHHHHHHhc--cCCCCeEEEEcCcccHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEE
Q 021344 149 PGPDEEFKMAQEYFK--SAQGGLLVDVSCGSGLFSRKFAKS--GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 224 (314)
Q Consensus 149 ~~~~~~~~~l~~~l~--~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~ 224 (314)
|..+.....+...+. ..++.+|||||||+|..+..+++. .++.+++|+|+|+.|++.|++++...+ ...+++++
T Consensus 37 p~y~~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~--~~~~v~~~ 114 (247)
T PRK15451 37 PGYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK--APTPVDVI 114 (247)
T ss_pred CChHHHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEE
Confidence 444444444433321 235789999999999999888873 456799999999999999999988765 23589999
Q ss_pred EecCCCCCCCCCchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEeccc
Q 021344 225 RADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 225 ~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
++|+..++++ .+|+|++..++||+++. ..++++++++|||||.+++.+...
T Consensus 115 ~~d~~~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~ 167 (247)
T PRK15451 115 EGDIRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS 167 (247)
T ss_pred eCChhhCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 9999888764 49999999999999754 579999999999999999988543
No 27
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.71 E-value=3e-17 Score=134.28 Aligned_cols=106 Identities=29% Similarity=0.520 Sum_probs=87.7
Q ss_pred HHHHHhc-cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC
Q 021344 157 MAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (314)
Q Consensus 157 ~l~~~l~-~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~ 235 (314)
.+..+.. ..++.+|||||||+|.++..+++.+. +++|+|+++.+++. . ++.....+....+.++
T Consensus 12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~--~-----------~~~~~~~~~~~~~~~~ 76 (161)
T PF13489_consen 12 LLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK--R-----------NVVFDNFDAQDPPFPD 76 (161)
T ss_dssp HHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH--T-----------TSEEEEEECHTHHCHS
T ss_pred HHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh--h-----------hhhhhhhhhhhhhccc
Confidence 4444443 45688999999999999999988876 99999999999887 1 2333444444555567
Q ss_pred CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344 236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
++||+|++..+|+|++|+..+|+++.++|||||++++.++..
T Consensus 77 ~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 77 GSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp SSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred cchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 899999999999999999999999999999999999999765
No 28
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.71 E-value=9.2e-17 Score=136.09 Aligned_cols=113 Identities=18% Similarity=0.201 Sum_probs=92.7
Q ss_pred HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCC
Q 021344 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236 (314)
Q Consensus 157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~ 236 (314)
.+.+.+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++....+ .++.+..+|+...+++ +
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~--~V~~iD~s~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~~-~ 93 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGY--DVRAWDHNPASIASVLDMKAREN----LPLRTDAYDINAAALN-E 93 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHhC----CCceeEeccchhcccc-C
Confidence 344555555678999999999999999999875 99999999999999999887665 3477888888766654 5
Q ss_pred chhhheecchhccCC--CHHHHHHHHHhhcccCcEEEEEecc
Q 021344 237 FVDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 237 ~fD~V~~~~vl~h~~--d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
+||+|++..+++|++ +...+++++.++|||||++++.++.
T Consensus 94 ~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~ 135 (195)
T TIGR00477 94 DYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAM 135 (195)
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEec
Confidence 799999999999985 3468999999999999997666543
No 29
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.71 E-value=6.7e-17 Score=143.17 Aligned_cols=118 Identities=20% Similarity=0.237 Sum_probs=95.3
Q ss_pred HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (314)
Q Consensus 154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~ 233 (314)
..+.+.+.+..++|.+|||||||.|.++..++++. +++|+|+++|+...+.++++++..+ ...++++...|..+++.
T Consensus 50 k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~g--l~~~v~v~~~D~~~~~~ 126 (273)
T PF02353_consen 50 KLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAG--LEDRVEVRLQDYRDLPG 126 (273)
T ss_dssp HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCST--SSSTEEEEES-GGG---
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEeeccccCC
Confidence 35577778888999999999999999999999994 4599999999999999999999988 45789999999887653
Q ss_pred CCCchhhheecchhccCC--CHHHHHHHHHhhcccCcEEEEEeccc
Q 021344 234 ASGFVDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~--d~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
+||.|++..++||+. +...+++++.++|||||++++.+...
T Consensus 127 ---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 127 ---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp ---S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred ---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 899999999999995 56899999999999999999877655
No 30
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.71 E-value=1.8e-16 Score=141.31 Aligned_cols=113 Identities=20% Similarity=0.340 Sum_probs=99.0
Q ss_pred hccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhh
Q 021344 162 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 240 (314)
Q Consensus 162 l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~ 240 (314)
....++.+|||+|||+|..+..+++. ++..+|+|+|+++.+++.|+++....+. .+++++.+|++.+++++++||+
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~---~~v~~~~~d~~~l~~~~~~fD~ 149 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY---TNVEFRLGEIEALPVADNSVDV 149 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC---CCEEEEEcchhhCCCCCCceeE
Confidence 34557889999999999988776665 5555899999999999999998877652 5899999999999988889999
Q ss_pred heecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344 241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 241 V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
|++..+++|.++...+++++.++|||||++++.++..
T Consensus 150 Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~ 186 (272)
T PRK11873 150 IISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVL 186 (272)
T ss_pred EEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 9999999999999999999999999999999987654
No 31
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.70 E-value=1.8e-16 Score=137.20 Aligned_cols=106 Identities=21% Similarity=0.269 Sum_probs=95.1
Q ss_pred CeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecchh
Q 021344 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL 247 (314)
Q Consensus 168 ~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl 247 (314)
++|||||||+|.++..+++.++..+++|+|+|+.+++.+++++...+ ...++.++..|+...+++ ++||+|++..++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~g--l~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l 77 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALG--LQGRIRIFYRDSAKDPFP-DTYDLVFGFEVI 77 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CCcceEEEecccccCCCC-CCCCEeehHHHH
Confidence 37999999999999999988766799999999999999999988766 356899999999776664 589999999999
Q ss_pred ccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 248 HCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 248 ~h~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
+|+.++..+++++.++|||||++++.++.
T Consensus 78 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 78 HHIKDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred HhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 99999999999999999999999998864
No 32
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.70 E-value=1.7e-16 Score=138.31 Aligned_cols=105 Identities=28% Similarity=0.464 Sum_probs=95.2
Q ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~ 245 (314)
.+.+|||+|||+|.++..+++.++..+++++|+++.+++.++++.. .++.++.+|+...++++++||+|++.+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~fD~vi~~~ 106 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-------ENVQFICGDAEKLPLEDSSFDLIVSNL 106 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-------CCCeEEecchhhCCCCCCceeEEEEhh
Confidence 4578999999999999999999887789999999999999988542 468899999999888888999999999
Q ss_pred hhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344 246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 246 vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
+++|+.++..+++++.++|||||.+++.++..
T Consensus 107 ~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 107 ALQWCDDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred hhhhccCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 99999999999999999999999999988654
No 33
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.69 E-value=2.2e-16 Score=129.54 Aligned_cols=117 Identities=23% Similarity=0.323 Sum_probs=100.2
Q ss_pred HHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeE-EEEecCCCCC-CCC
Q 021344 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA-LVRADVCRLP-FAS 235 (314)
Q Consensus 158 l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~-~~~~d~~~lp-~~~ 235 (314)
+..++.......+|+||||+|..-...... +..+|+++|+++.|.+.+.+.+++.. ..++. |+.++.+++| +++
T Consensus 68 i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~~mee~~~ks~~E~k---~~~~~~fvva~ge~l~~l~d 143 (252)
T KOG4300|consen 68 IYYFLGKSGKGDVLEVGCGTGANFKFYPWK-PINSVTCLDPNEKMEEIADKSAAEKK---PLQVERFVVADGENLPQLAD 143 (252)
T ss_pred hHHHhcccCccceEEecccCCCCcccccCC-CCceEEEeCCcHHHHHHHHHHHhhcc---CcceEEEEeechhcCccccc
Confidence 334555545567899999999987765533 45699999999999999999988874 46776 9999999998 889
Q ss_pred CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344 236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (314)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~ 278 (314)
+++|+|++..+|.-+.|+.+.|+++.|+|+|||++++.+..+.
T Consensus 144 ~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~ 186 (252)
T KOG4300|consen 144 GSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAG 186 (252)
T ss_pred CCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 9999999999999999999999999999999999999997764
No 34
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.69 E-value=3e-16 Score=142.39 Aligned_cols=105 Identities=23% Similarity=0.356 Sum_probs=93.5
Q ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (314)
Q Consensus 165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~ 244 (314)
.++.+|||||||+|.++..+++..+..+++++|+|+.+++.|+++... .+++++.+|++++++++++||+|++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~------~~i~~i~gD~e~lp~~~~sFDvVIs~ 185 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------KECKIIEGDAEDLPFPTDYADRYVSA 185 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc------cCCeEEeccHHhCCCCCCceeEEEEc
Confidence 356799999999999998888775556999999999999999986532 46889999999999888999999999
Q ss_pred chhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344 245 AALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 245 ~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
.+++|++++..+++++.++|||||++++...
T Consensus 186 ~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 186 GSIEYWPDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred ChhhhCCCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9999999999999999999999999988754
No 35
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.69 E-value=6e-16 Score=129.62 Aligned_cols=101 Identities=20% Similarity=0.197 Sum_probs=89.8
Q ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~ 245 (314)
++.+|||+|||+|..+..++...+..+|+++|+++.+++.|+++.+..+. .+++++.+|+.+++. .++||+|++..
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l---~~i~~~~~d~~~~~~-~~~fDlV~~~~ 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL---KNVTVVHGRAEEFGQ-EEKFDVVTSRA 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC---CCEEEEeccHhhCCC-CCCccEEEEcc
Confidence 37899999999999999998877677999999999999999999988763 469999999988776 67899999865
Q ss_pred hhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 246 ALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 246 vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
+.++..+++++.+.|||||++++..
T Consensus 121 ----~~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 121 ----VASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred ----ccCHHHHHHHHHHhcCCCeEEEEEe
Confidence 4678899999999999999999886
No 36
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.68 E-value=5.5e-16 Score=135.61 Aligned_cols=108 Identities=17% Similarity=0.245 Sum_probs=93.5
Q ss_pred CCCeEEEEcCcccHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhee
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 243 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~--~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~ 243 (314)
++.+|||+|||+|.++..+++.. ++.+++|+|+|+.+++.|+++++..+ ...+++++++|+..++++ .+|+|++
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~--~~d~v~~ 128 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH--SEIPVEILCNDIRHVEIK--NASMVIL 128 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEECChhhCCCC--CCCEEee
Confidence 57799999999999999998863 56799999999999999999887654 235799999999988765 5899999
Q ss_pred cchhccCCC--HHHHHHHHHhhcccCcEEEEEeccc
Q 021344 244 GAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 244 ~~vl~h~~d--~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
..+++|+++ +..+++++.++|||||.+++.++..
T Consensus 129 ~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 129 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred ecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 999999974 4689999999999999999998654
No 37
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.68 E-value=5.7e-17 Score=122.62 Aligned_cols=95 Identities=32% Similarity=0.552 Sum_probs=80.5
Q ss_pred EEEEcCcccHHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec-c
Q 021344 170 LVDVSCGSGLFSRKFAKSG---TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG-A 245 (314)
Q Consensus 170 iLDiGcG~G~~~~~l~~~~---~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~-~ 245 (314)
|||+|||+|..+..+.+.. +..+++|+|+|+.+++.++++....+ .+++++++|+.++++.+++||+|++. .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~----~~~~~~~~D~~~l~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG----PKVRFVQADARDLPFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT----TTSEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC----CceEEEECCHhHCcccCCCeeEEEEcCC
Confidence 7999999999999999885 33699999999999999999887754 58999999999999888899999995 5
Q ss_pred hhccCCCH--HHHHHHHHhhcccCc
Q 021344 246 ALHCWPSP--SNAVAEISRILRSGG 268 (314)
Q Consensus 246 vl~h~~d~--~~~l~~i~r~LkpGG 268 (314)
+++|+.+. ..+++++.++|||||
T Consensus 77 ~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 77 SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 59998754 589999999999998
No 38
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.68 E-value=6.4e-18 Score=127.30 Aligned_cols=97 Identities=25% Similarity=0.379 Sum_probs=66.7
Q ss_pred EEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--CCCCchhhheecchhc
Q 021344 171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHAGAALH 248 (314)
Q Consensus 171 LDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--~~~~~fD~V~~~~vl~ 248 (314)
||||||+|.++..+....+..+++|+|+|+.+++.+++++.... ..+...+..+..+.. ...++||+|++..++|
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG---NDNFERLRFDVLDLFDYDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT------EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---CcceeEEEeecCChhhcccccccceehhhhhHh
Confidence 79999999999999999777799999999999999988888754 234444444443322 1125899999999999
Q ss_pred cCCCHHHHHHHHHhhcccCcEE
Q 021344 249 CWPSPSNAVAEISRILRSGGVF 270 (314)
Q Consensus 249 h~~d~~~~l~~i~r~LkpGG~l 270 (314)
|++++..+++++.++|||||+|
T Consensus 78 ~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhhHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999986
No 39
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.66 E-value=1.2e-15 Score=136.99 Aligned_cols=103 Identities=18% Similarity=0.217 Sum_probs=89.2
Q ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~ 245 (314)
++++|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++.+..+ .++++...|+...++ +++||+|++..
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~--~V~avD~s~~ai~~~~~~~~~~~----l~v~~~~~D~~~~~~-~~~fD~I~~~~ 192 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF--DVTAVDINQQSLENLQEIAEKEN----LNIRTGLYDINSASI-QEEYDFILSTV 192 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC----CceEEEEechhcccc-cCCccEEEEcc
Confidence 456999999999999999999875 99999999999999999888765 478889999877655 67899999999
Q ss_pred hhccCC--CHHHHHHHHHhhcccCcEEEEEec
Q 021344 246 ALHCWP--SPSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 246 vl~h~~--d~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
+++|++ +...+++++.++|||||++++...
T Consensus 193 vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~ 224 (287)
T PRK12335 193 VLMFLNRERIPAIIKNMQEHTNPGGYNLIVCA 224 (287)
T ss_pred hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 999986 446899999999999999776543
No 40
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.66 E-value=2.3e-15 Score=117.66 Aligned_cols=115 Identities=23% Similarity=0.219 Sum_probs=93.3
Q ss_pred HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-CCC
Q 021344 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPF 233 (314)
Q Consensus 155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-lp~ 233 (314)
...+.+.+...++.+|||+|||+|.++..+++..+..+++++|+++.+++.++++++..+. .+++++.+|+.. ++.
T Consensus 8 ~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~ 84 (124)
T TIGR02469 8 RALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV---SNIVIVEGDAPEALED 84 (124)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC---CceEEEeccccccChh
Confidence 3445566666667899999999999999999987667999999999999999998887652 578999998764 333
Q ss_pred CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
..++||+|++....++ ...+++++.+.|||||++++...
T Consensus 85 ~~~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 85 SLPEPDRVFIGGSGGL---LQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred hcCCCCEEEECCcchh---HHHHHHHHHHHcCCCCEEEEEec
Confidence 3468999999776543 35889999999999999998763
No 41
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.65 E-value=9.3e-16 Score=134.35 Aligned_cols=119 Identities=21% Similarity=0.272 Sum_probs=94.0
Q ss_pred HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC
Q 021344 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (314)
Q Consensus 155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~ 234 (314)
++++...+..-.+++|||||||+|+++..++..|+ ..|+|+|++.....+.+-.-+-.+ ....+..+-..++++|.
T Consensus 104 W~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg--~~~~~~~lplgvE~Lp~- 179 (315)
T PF08003_consen 104 WDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLG--QDPPVFELPLGVEDLPN- 179 (315)
T ss_pred HHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhC--CCccEEEcCcchhhccc-
Confidence 45677777666899999999999999999999986 479999999876555333222221 11334444456678887
Q ss_pred CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
.++||+|++.+||.|..+|...|++++..|+|||.+++.|..-
T Consensus 180 ~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi 222 (315)
T PF08003_consen 180 LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVI 222 (315)
T ss_pred cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeee
Confidence 7889999999999999999999999999999999999988653
No 42
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.65 E-value=3.9e-15 Score=129.78 Aligned_cols=119 Identities=30% Similarity=0.475 Sum_probs=102.4
Q ss_pred HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC
Q 021344 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (314)
Q Consensus 157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~ 235 (314)
.+...+...++.+|||+|||+|.++..++..++ ..+++++|+++.+++.+++++...+ ...++.++.+|+...++.+
T Consensus 42 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~ 119 (239)
T PRK00216 42 KTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG--LSGNVEFVQGDAEALPFPD 119 (239)
T ss_pred HHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc--cccCeEEEecccccCCCCC
Confidence 444455555678999999999999999998875 5799999999999999999876543 2357899999998888777
Q ss_pred CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344 236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
++||+|++..+++|+.++..+++++.++|+|||++++.+...
T Consensus 120 ~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 120 NSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred CCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecC
Confidence 899999999999999999999999999999999999887654
No 43
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.64 E-value=5e-15 Score=126.78 Aligned_cols=111 Identities=24% Similarity=0.242 Sum_probs=88.0
Q ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC---------CCCCCCeEEEEecCCCCCCC-
Q 021344 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN---------TILTSNLALVRADVCRLPFA- 234 (314)
Q Consensus 165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------~~~~~~v~~~~~d~~~lp~~- 234 (314)
.++.+|||+|||.|..+..|+++|. +|+|+|+|+.+++.+.+...... .....+++++++|+.+++..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~--~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH--RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC--eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 4578999999999999999999987 99999999999998644221100 00125799999999887642
Q ss_pred CCchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEeccc
Q 021344 235 SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
.++||.|+...+++|++.. ..+++.+.++|||||++++.++..
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~ 155 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDY 155 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEc
Confidence 3579999999999999644 368999999999999887777654
No 44
>PRK06922 hypothetical protein; Provisional
Probab=99.64 E-value=1.5e-15 Score=145.94 Aligned_cols=109 Identities=18% Similarity=0.294 Sum_probs=94.5
Q ss_pred ccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--CCCCchhh
Q 021344 163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDA 240 (314)
Q Consensus 163 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--~~~~~fD~ 240 (314)
...++.+|||+|||+|.++..+++..++.+++|+|+|+.+++.|+++....+ .++.++++|+.++| +++++||+
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g----~~ie~I~gDa~dLp~~fedeSFDv 490 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG----RSWNVIKGDAINLSSSFEKESVDT 490 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC----CCeEEEEcchHhCccccCCCCEEE
Confidence 3346789999999999999999988778899999999999999998765543 57888999998877 77889999
Q ss_pred heecchhccCC-------------CHHHHHHHHHhhcccCcEEEEEec
Q 021344 241 VHAGAALHCWP-------------SPSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 241 V~~~~vl~h~~-------------d~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
|+++.++||+. ++..+++++.++|||||.+++.+.
T Consensus 491 VVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 491 IVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred EEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 99999998762 457899999999999999999874
No 45
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.64 E-value=3.2e-15 Score=124.61 Aligned_cols=113 Identities=19% Similarity=0.268 Sum_probs=91.1
Q ss_pred HHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCc
Q 021344 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF 237 (314)
Q Consensus 158 l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~ 237 (314)
+.+.++..+++++||+|||.|+.+.+|++.|. .|+++|.|+..++.+++..+..+ ..++....|+....++ +.
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~--~VtAvD~s~~al~~l~~~a~~~~----l~i~~~~~Dl~~~~~~-~~ 94 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGF--DVTAVDISPVALEKLQRLAEEEG----LDIRTRVADLNDFDFP-EE 94 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHHTT-----TEEEEE-BGCCBS-T-TT
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHhhcC----ceeEEEEecchhcccc-CC
Confidence 34445555678999999999999999999998 99999999999999998887766 5699999999887775 67
Q ss_pred hhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEeccc
Q 021344 238 VDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 238 fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
||+|++..|++|++.. ..+++.+...++|||++++.++..
T Consensus 95 yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~ 136 (192)
T PF03848_consen 95 YDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFME 136 (192)
T ss_dssp EEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB-
T ss_pred cCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecc
Confidence 9999999999998744 468999999999999999876644
No 46
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.63 E-value=4.4e-15 Score=128.12 Aligned_cols=116 Identities=29% Similarity=0.417 Sum_probs=100.1
Q ss_pred HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC
Q 021344 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (314)
Q Consensus 157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~ 235 (314)
.+.+.+...++.+|||+|||+|.++..+++.++. .+++++|+++.+++.++++.. . ..++.++.+|+.+.++.+
T Consensus 30 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~----~~~i~~~~~d~~~~~~~~ 104 (223)
T TIGR01934 30 RAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L----PLNIEFIQADAEALPFED 104 (223)
T ss_pred HHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c----CCCceEEecchhcCCCCC
Confidence 3344444557889999999999999999988764 689999999999999998765 1 257899999999888777
Q ss_pred CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344 236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
++||+|++.++++|+.++..+++++.+.|+|||++++.++..
T Consensus 105 ~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 105 NSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred CcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 899999999999999999999999999999999999987654
No 47
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.63 E-value=1.7e-15 Score=125.34 Aligned_cols=112 Identities=19% Similarity=0.202 Sum_probs=100.7
Q ss_pred HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCC
Q 021344 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236 (314)
Q Consensus 157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~ 236 (314)
.+...++.....+|.|+|||+|..+..|+++.+...++|+|-|++|++.|+++ ..+++|..+|+.... ++.
T Consensus 21 dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r--------lp~~~f~~aDl~~w~-p~~ 91 (257)
T COG4106 21 DLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR--------LPDATFEEADLRTWK-PEQ 91 (257)
T ss_pred HHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh--------CCCCceecccHhhcC-CCC
Confidence 45556677778899999999999999999999999999999999999999885 378999999998864 356
Q ss_pred chhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344 237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 237 ~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
.+|+++++.+|++++|-..+|..+...|.|||+|.+..+..
T Consensus 92 ~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 92 PTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred ccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCc
Confidence 79999999999999999999999999999999999988654
No 48
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.62 E-value=6.5e-15 Score=123.04 Aligned_cols=101 Identities=15% Similarity=0.204 Sum_probs=86.5
Q ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~ 245 (314)
++.+|||+|||+|.++..++..++..+|+|+|+++.+++.++++.+..+. .+++++++|+.+++ .+++||+|++..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~---~~i~~i~~d~~~~~-~~~~fD~I~s~~ 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL---NNVEIVNGRAEDFQ-HEEQFDVITSRA 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC---CCeEEEecchhhcc-ccCCccEEEehh
Confidence 47899999999999999988877777999999999999999998887652 57999999998864 357899999875
Q ss_pred hhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 246 ALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 246 vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
+.+...+++.+.++|||||++++..
T Consensus 118 ----~~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 118 ----LASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ----hhCHHHHHHHHHHhcCCCCEEEEEc
Confidence 3456678899999999999999875
No 49
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.62 E-value=3.3e-15 Score=127.28 Aligned_cols=107 Identities=20% Similarity=0.236 Sum_probs=89.8
Q ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC-CCCC--CCCCchhhhe
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLP--FASGFVDAVH 242 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~-~~lp--~~~~~fD~V~ 242 (314)
++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.++++++..+. .++.++++|+ ..++ +++++||+|+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~---~~v~~~~~d~~~~l~~~~~~~~~D~V~ 116 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL---TNLRLLCGDAVEVLLDMFPDGSLDRIY 116 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC---CCEEEEecCHHHHHHHHcCccccceEE
Confidence 57799999999999999999887777999999999999999998887652 6799999999 6665 6678999999
Q ss_pred ecchhccCC--------CHHHHHHHHHhhcccCcEEEEEec
Q 021344 243 AGAALHCWP--------SPSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 243 ~~~vl~h~~--------d~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
+.+...+.. ....+++++.++|||||++++.+.
T Consensus 117 ~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 117 LNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 876543221 136789999999999999999873
No 50
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.61 E-value=1.1e-14 Score=124.35 Aligned_cols=113 Identities=20% Similarity=0.190 Sum_probs=92.2
Q ss_pred HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (314)
Q Consensus 154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp 232 (314)
....+.+.+...++.+|||+|||+|..+..+++.. ...+|+++|+++.+++.|+++++..+ ...+++++.+|+.+..
T Consensus 60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~--~~~~v~~~~~d~~~~~ 137 (205)
T PRK13944 60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG--YWGVVEVYHGDGKRGL 137 (205)
T ss_pred HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC--CCCcEEEEECCcccCC
Confidence 34566677777788999999999999998888763 24589999999999999999988765 2346999999997754
Q ss_pred CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
...++||+|++..+++|++ +++.+.|||||++++..
T Consensus 138 ~~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 138 EKHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred ccCCCccEEEEccCcchhh------HHHHHhcCcCcEEEEEE
Confidence 4457899999999888774 46789999999998865
No 51
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.61 E-value=8.2e-15 Score=124.79 Aligned_cols=102 Identities=12% Similarity=0.258 Sum_probs=85.4
Q ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (314)
Q Consensus 165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~ 244 (314)
.++.+|||||||+|.++..+++..+..+++|+|+|+.+++.|+++. .++.+..+|+.. |+++++||+|++.
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~--------~~~~~~~~d~~~-~~~~~sfD~V~~~ 112 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL--------PNINIIQGSLFD-PFKDNFFDLVLTK 112 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC--------CCCcEEEeeccC-CCCCCCEEEEEEC
Confidence 3567899999999999999988755569999999999999998753 457788999887 8888999999999
Q ss_pred chhccCCC--HHHHHHHHHhhcccCcEEEEEeccc
Q 021344 245 AALHCWPS--PSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 245 ~vl~h~~d--~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
.+++|++. ..++++++.+++ ++++++.++..
T Consensus 113 ~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 113 GVLIHINPDNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred ChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 99999952 357888888887 56777777543
No 52
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.61 E-value=7.4e-15 Score=136.44 Aligned_cols=114 Identities=17% Similarity=0.180 Sum_probs=95.5
Q ss_pred HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC
Q 021344 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (314)
Q Consensus 155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~ 234 (314)
...+.+.+...++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.|+++... .++++...|...+
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~------l~v~~~~~D~~~l--- 225 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAG------LPVEIRLQDYRDL--- 225 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhcc------CeEEEEECchhhc---
Confidence 4455666777788999999999999999998864 35999999999999999997742 3578888888665
Q ss_pred CCchhhheecchhccCCC--HHHHHHHHHhhcccCcEEEEEecccC
Q 021344 235 SGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRY 278 (314)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d--~~~~l~~i~r~LkpGG~l~i~~~~~~ 278 (314)
+++||+|++..+++|+.+ +..+++++.++|||||++++.+....
T Consensus 226 ~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 226 NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 468999999999999964 47899999999999999999876543
No 53
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.60 E-value=2.3e-14 Score=129.96 Aligned_cols=120 Identities=15% Similarity=0.114 Sum_probs=101.4
Q ss_pred HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC
Q 021344 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (314)
Q Consensus 155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~ 234 (314)
.+.+.+.+...+..+|||||||+|.++..+++.++..+++++|. +.+++.+++++...+ ...+++++.+|+.+.+++
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~g--l~~rv~~~~~d~~~~~~~ 214 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG--VADRMRGIAVDIYKESYP 214 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCC--ccceEEEEecCccCCCCC
Confidence 34555666667778999999999999999999998889999997 789999999888876 356899999999876654
Q ss_pred CCchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEecccCC
Q 021344 235 SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYT 279 (314)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~~~~ 279 (314)
.+|+|++.+++|++.+. ..++++++++|||||++++.++....
T Consensus 215 --~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~ 259 (306)
T TIGR02716 215 --EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDD 259 (306)
T ss_pred --CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence 36999999999998765 47999999999999999999875543
No 54
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.59 E-value=7.1e-15 Score=121.29 Aligned_cols=109 Identities=17% Similarity=0.257 Sum_probs=87.3
Q ss_pred HHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchh
Q 021344 160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD 239 (314)
Q Consensus 160 ~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD 239 (314)
..++...-.++||+|||.|.++..|+.+.. +++++|+|+.+++.|++++... .+|++.++|+.+. .++++||
T Consensus 37 aaLp~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~~-----~~V~~~~~dvp~~-~P~~~FD 108 (201)
T PF05401_consen 37 AALPRRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAGL-----PHVEWIQADVPEF-WPEGRFD 108 (201)
T ss_dssp HHHTTSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT------SSEEEEES-TTT----SS-EE
T ss_pred HhcCccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCCC-----CCeEEEECcCCCC-CCCCCee
Confidence 346666667899999999999999999965 9999999999999999998753 6899999999764 4678999
Q ss_pred hheecchhccCCCH---HHHHHHHHhhcccCcEEEEEecc
Q 021344 240 AVHAGAALHCWPSP---SNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 240 ~V~~~~vl~h~~d~---~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
+|+++.+++++.+. ..+++.+...|+|||.+++.++.
T Consensus 109 LIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 109 LIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp EEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred EEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 99999999999864 46899999999999999998864
No 55
>PRK06202 hypothetical protein; Provisional
Probab=99.59 E-value=1e-14 Score=127.07 Aligned_cols=108 Identities=18% Similarity=0.233 Sum_probs=87.0
Q ss_pred hccCCCCeEEEEcCcccHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCc
Q 021344 162 FKSAQGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF 237 (314)
Q Consensus 162 l~~~~~~~iLDiGcG~G~~~~~l~~~----~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~ 237 (314)
+...++.+|||+|||+|.++..+++. ++..+++|+|+|+.+++.|+++... .++.+...+...++..+++
T Consensus 56 l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~------~~~~~~~~~~~~l~~~~~~ 129 (232)
T PRK06202 56 LSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR------PGVTFRQAVSDELVAEGER 129 (232)
T ss_pred cCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc------CCCeEEEEecccccccCCC
Confidence 33456779999999999998887753 4556999999999999999886532 3567777777777777789
Q ss_pred hhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEeccc
Q 021344 238 VDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 238 fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
||+|++++++||++++ ..+++++.++++ |.+++.+..+
T Consensus 130 fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~ 169 (232)
T PRK06202 130 FDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIR 169 (232)
T ss_pred ccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEecccc
Confidence 9999999999999986 479999999998 6666666554
No 56
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.59 E-value=8.3e-15 Score=129.68 Aligned_cols=109 Identities=14% Similarity=0.203 Sum_probs=85.9
Q ss_pred CCCeEEEEcCcccH----HHHHHHHhCC-----CCeEEEEeCCHHHHHHHHHHHHh----cCCC----------------
Q 021344 166 QGGLLVDVSCGSGL----FSRKFAKSGT-----YSGVVALDFSENMLRQCYDFIKQ----DNTI---------------- 216 (314)
Q Consensus 166 ~~~~iLDiGcG~G~----~~~~l~~~~~-----~~~v~giD~s~~~~~~a~~~~~~----~~~~---------------- 216 (314)
++.+|+|+|||+|. ++..+++.++ +.+|+|+|+|+.+++.|++.... .+.+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45689999999996 4445555432 45899999999999999985310 0000
Q ss_pred ----CCCCeEEEEecCCCCCCCCCchhhheecchhccCCCHH--HHHHHHHhhcccCcEEEEEe
Q 021344 217 ----LTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 217 ----~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpGG~l~i~~ 274 (314)
...++.|.++|+.+.+++.++||+|+|.++++|++++. .++++++++|||||++++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 01378999999998877788999999999999997554 79999999999999999865
No 57
>PLN03075 nicotianamine synthase; Provisional
Probab=99.58 E-value=3.5e-14 Score=125.79 Aligned_cols=106 Identities=11% Similarity=0.095 Sum_probs=89.0
Q ss_pred CCCeEEEEcCcccHHHH--HHHHhCCCCeEEEEeCCHHHHHHHHHHHHh-cCCCCCCCeEEEEecCCCCCCCCCchhhhe
Q 021344 166 QGGLLVDVSCGSGLFSR--KFAKSGTYSGVVALDFSENMLRQCYDFIKQ-DNTILTSNLALVRADVCRLPFASGFVDAVH 242 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~--~l~~~~~~~~v~giD~s~~~~~~a~~~~~~-~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~ 242 (314)
++.+|+|||||.|.++. .++..+++.+++|+|+++++++.|++.++. .+ ...+++|..+|+.+.+...+.||+|+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~g--L~~rV~F~~~Da~~~~~~l~~FDlVF 200 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPD--LSKRMFFHTADVMDVTESLKEYDVVF 200 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccC--ccCCcEEEECchhhcccccCCcCEEE
Confidence 67899999999884433 334457778999999999999999999864 44 35789999999987643356899999
Q ss_pred ecchhccC--CCHHHHHHHHHhhcccCcEEEEEe
Q 021344 243 AGAALHCW--PSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 243 ~~~vl~h~--~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
+. +++++ .++.++++++.+.|+|||++++..
T Consensus 201 ~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 201 LA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred Ee-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 99 99988 688999999999999999999987
No 58
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.58 E-value=1.6e-14 Score=138.73 Aligned_cols=114 Identities=22% Similarity=0.315 Sum_probs=95.7
Q ss_pred HHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCC--CCCC
Q 021344 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC--RLPF 233 (314)
Q Consensus 156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~--~lp~ 233 (314)
..+.+.+...++.+|||||||+|.++..+++.+. +++|+|+++.+++.+++... ...++.++++|+. .+++
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~-----~~~~i~~~~~d~~~~~~~~ 99 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESING-----HYKNVKFMCADVTSPDLNI 99 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhc-----cCCceEEEEecccccccCC
Confidence 3555666666678999999999999999999865 99999999999988765322 1367999999986 4677
Q ss_pred CCCchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEecc
Q 021344 234 ASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
++++||+|++..+++|+++. ..+++++.++|||||++++.+..
T Consensus 100 ~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~ 144 (475)
T PLN02336 100 SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESC 144 (475)
T ss_pred CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 78899999999999999874 68999999999999999997654
No 59
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.58 E-value=3.6e-14 Score=121.75 Aligned_cols=113 Identities=17% Similarity=0.166 Sum_probs=92.9
Q ss_pred HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (314)
Q Consensus 153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l 231 (314)
.....+.+.+...++.+|||||||+|+++..+++.. ...+|+++|+++.+++.++++++..+. .+++++.+|....
T Consensus 63 ~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~---~~v~~~~gd~~~~ 139 (212)
T PRK13942 63 HMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY---DNVEVIVGDGTLG 139 (212)
T ss_pred HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CCeEEEECCcccC
Confidence 345567777788889999999999999998888763 345999999999999999999987652 6899999998776
Q ss_pred CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
....+.||+|++....++++ +.+.+.|||||++++..
T Consensus 140 ~~~~~~fD~I~~~~~~~~~~------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 140 YEENAPYDRIYVTAAGPDIP------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCcCCCcCEEEECCCcccch------HHHHHhhCCCcEEEEEE
Confidence 55567899999987766552 45677899999998864
No 60
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.57 E-value=3.8e-14 Score=118.46 Aligned_cols=113 Identities=15% Similarity=0.232 Sum_probs=93.0
Q ss_pred HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCC
Q 021344 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236 (314)
Q Consensus 157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~ 236 (314)
++...+...++.+|||+|||+|.++..++..++ +++++|+++.+++.++++++..+ .+++++.+|+.+.+ .+
T Consensus 10 ~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~--~~ 81 (179)
T TIGR00537 10 LLEANLRELKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNN----VGLDVVMTDLFKGV--RG 81 (179)
T ss_pred HHHHHHHhcCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcC----CceEEEEccccccc--CC
Confidence 444555555678999999999999999999886 99999999999999999988765 46889999987654 45
Q ss_pred chhhheecchhccCCC---------------------HHHHHHHHHhhcccCcEEEEEeccc
Q 021344 237 FVDAVHAGAALHCWPS---------------------PSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 237 ~fD~V~~~~vl~h~~d---------------------~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
+||+|+++..+++.++ ...+++++.++|||||.+++.....
T Consensus 82 ~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 82 KFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred cccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 8999999887776653 2467999999999999999987543
No 61
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.57 E-value=5.1e-14 Score=118.56 Aligned_cols=114 Identities=19% Similarity=0.166 Sum_probs=93.2
Q ss_pred HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (314)
Q Consensus 154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~ 233 (314)
....+...+...++.+|||+|||+|.++..+++.++..+++++|+++.+++.+++++...+. .+++++.+|+.. ++
T Consensus 19 ~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~---~~i~~~~~d~~~-~~ 94 (187)
T PRK08287 19 VRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC---GNIDIIPGEAPI-EL 94 (187)
T ss_pred HHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC---CCeEEEecCchh-hc
Confidence 34455567777778899999999999999999988777999999999999999998877652 478999988742 33
Q ss_pred CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
.++||+|++....++ ...+++.+.+.|||||++++...
T Consensus 95 -~~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 95 -PGKADAIFIGGSGGN---LTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred -CcCCCEEEECCCccC---HHHHHHHHHHhcCCCeEEEEEEe
Confidence 357999998766543 46789999999999999988653
No 62
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.57 E-value=4e-14 Score=123.32 Aligned_cols=116 Identities=22% Similarity=0.336 Sum_probs=97.9
Q ss_pred HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-C
Q 021344 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F 233 (314)
Q Consensus 155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-~ 233 (314)
++.+...+...++.+|||||||+|.++..+.+.+. +++++|+++.+++.+++++...+ ..+.+...|+...+ .
T Consensus 37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~ 110 (233)
T PRK05134 37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARLGA--DVTGIDASEENIEVARLHALESG----LKIDYRQTTAEELAAE 110 (233)
T ss_pred HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC--eEEEEcCCHHHHHHHHHHHHHcC----CceEEEecCHHHhhhh
Confidence 34555555556788999999999999999988764 89999999999999998877654 46788888877654 3
Q ss_pred CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
.+++||+|++.++++|++++..+++.+.+.|+|||.+++..+.
T Consensus 111 ~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 111 HPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred cCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 4578999999999999999999999999999999999988754
No 63
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.56 E-value=1.5e-14 Score=122.50 Aligned_cols=107 Identities=19% Similarity=0.268 Sum_probs=87.9
Q ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---CCCCchhhhe
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVDAVH 242 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp---~~~~~fD~V~ 242 (314)
...++||||||+|.++..+++..++..++|+|+++.+++.|++++...+. .++.++++|+.+++ ++++++|.|+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l---~ni~~i~~d~~~~~~~~~~~~~~d~v~ 92 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL---KNLHVLCGDANELLDKFFPDGSLSKVF 92 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC---CCEEEEccCHHHHHHhhCCCCceeEEE
Confidence 45689999999999999999998888999999999999999998887763 58999999997643 4456899998
Q ss_pred ecchhccCCC--------HHHHHHHHHhhcccCcEEEEEec
Q 021344 243 AGAALHCWPS--------PSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 243 ~~~vl~h~~d--------~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
+.+...+... ...+++++.++|||||.+++.+.
T Consensus 93 ~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 93 LNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred EECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 7654322211 14689999999999999999883
No 64
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.56 E-value=5.2e-14 Score=121.46 Aligned_cols=111 Identities=23% Similarity=0.383 Sum_probs=90.4
Q ss_pred HHHHHHHhc--cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344 155 FKMAQEYFK--SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (314)
Q Consensus 155 ~~~l~~~l~--~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp 232 (314)
.+.+.+++. ..++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.|++++...+ ...++.+..+|+..++
T Consensus 42 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~v~gvD~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~~~~ 117 (219)
T TIGR02021 42 RRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA--IVKAVDISEQMVQMARNRAQGRD--VAGNVEFEVNDLLSLC 117 (219)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECChhhCC
Confidence 344555555 45678999999999999999998764 99999999999999999887654 2247999999998765
Q ss_pred CCCCchhhheecchhccCCC--HHHHHHHHHhhcccCcEEEE
Q 021344 233 FASGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVG 272 (314)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~~d--~~~~l~~i~r~LkpGG~l~i 272 (314)
++||+|++..+++|++. ...+++++.+++++++++.+
T Consensus 118 ---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 118 ---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred ---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 68999999999999864 46789999999887665544
No 65
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.56 E-value=3.3e-14 Score=130.36 Aligned_cols=111 Identities=22% Similarity=0.289 Sum_probs=94.1
Q ss_pred HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC--CCC
Q 021344 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFA 234 (314)
Q Consensus 157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l--p~~ 234 (314)
.+.+.+....+..+||||||+|.++..+++..++..++|+|+++.+++.+.+++...++ .++.++++|+..+ .++
T Consensus 113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL---~NV~~i~~DA~~ll~~~~ 189 (390)
T PRK14121 113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL---KNLLIINYDARLLLELLP 189 (390)
T ss_pred HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC---CcEEEEECCHHHhhhhCC
Confidence 34445555566799999999999999999998888999999999999999999888763 7899999998654 467
Q ss_pred CCchhhheecchhccCCCH-----------HHHHHHHHhhcccCcEEEEEec
Q 021344 235 SGFVDAVHAGAALHCWPSP-----------SNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~-----------~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
++++|.|++.+ ++| ..+++++.|+|+|||.+.+.|-
T Consensus 190 ~~s~D~I~lnF-----PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 190 SNSVEKIFVHF-----PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred CCceeEEEEeC-----CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 88999998754 454 5799999999999999999883
No 66
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.55 E-value=8.2e-14 Score=119.69 Aligned_cols=110 Identities=23% Similarity=0.232 Sum_probs=85.7
Q ss_pred cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC---------CCCCCCeEEEEecCCCCCCC
Q 021344 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN---------TILTSNLALVRADVCRLPFA 234 (314)
Q Consensus 164 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------~~~~~~v~~~~~d~~~lp~~ 234 (314)
..++.+|||+|||.|..+..|+++|. +|+|+|+|+.+++.+.+...... .....++++.++|+.+++..
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G~--~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQGH--EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCCC--eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 34578999999999999999999987 99999999999998743211000 00135789999999887533
Q ss_pred -CCchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEec
Q 021344 235 -SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 235 -~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
.+.||.|+...+++|++.. ..+++.+.++|||||++++.+.
T Consensus 113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~ 156 (218)
T PRK13255 113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTL 156 (218)
T ss_pred cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 2579999999999999644 4789999999999997555443
No 67
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.55 E-value=2.4e-14 Score=117.94 Aligned_cols=103 Identities=17% Similarity=0.337 Sum_probs=87.4
Q ss_pred HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-C-CCC
Q 021344 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L-PFA 234 (314)
Q Consensus 157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-l-p~~ 234 (314)
.+.+++.+ +.+|||+|||.|.++..|.+.. +.+.+|+|++++.+..+.+ ..+.++++|+++ + .|+
T Consensus 6 ~I~~~I~p--gsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~----------rGv~Viq~Dld~gL~~f~ 72 (193)
T PF07021_consen 6 IIAEWIEP--GSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVA----------RGVSVIQGDLDEGLADFP 72 (193)
T ss_pred HHHHHcCC--CCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHH----------cCCCEEECCHHHhHhhCC
Confidence 45555554 8899999999999999999863 6699999999999888877 678899999965 4 388
Q ss_pred CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
+++||.|+++.+|+++.+|..+|+|+.|+ |...+++.+
T Consensus 73 d~sFD~VIlsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFP 110 (193)
T PF07021_consen 73 DQSFDYVILSQTLQAVRRPDEVLEEMLRV---GRRAIVSFP 110 (193)
T ss_pred CCCccEEehHhHHHhHhHHHHHHHHHHHh---cCeEEEEec
Confidence 99999999999999999999999999776 556666653
No 68
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.55 E-value=5.9e-14 Score=120.79 Aligned_cols=112 Identities=16% Similarity=0.124 Sum_probs=92.2
Q ss_pred HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (314)
Q Consensus 154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp 232 (314)
....+.+.+...++.+|||||||+|.++..+++... ..+|+++|+++.+++.|+++++..+. .+++++.+|.....
T Consensus 65 ~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~---~~v~~~~~d~~~~~ 141 (215)
T TIGR00080 65 MVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL---DNVIVIVGDGTQGW 141 (215)
T ss_pred HHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC---CCeEEEECCcccCC
Confidence 445677777888899999999999999999988753 35699999999999999999988763 68999999987654
Q ss_pred CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
...++||+|++.....++ .+.+.+.|||||++++..
T Consensus 142 ~~~~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 142 EPLAPYDRIYVTAAGPKI------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred cccCCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEEE
Confidence 445689999988766555 356788999999998865
No 69
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.55 E-value=7.2e-14 Score=115.78 Aligned_cols=119 Identities=21% Similarity=0.376 Sum_probs=95.6
Q ss_pred HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (314)
Q Consensus 153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp 232 (314)
.-...+.+.+...+..+|||+|||+|..+..+++.++..+|+++|+++.+++.++++++..+. .+++++..|+.+.
T Consensus 18 ~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~---~~v~~~~~d~~~~- 93 (170)
T PF05175_consen 18 AGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL---ENVEVVQSDLFEA- 93 (170)
T ss_dssp HHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC---TTEEEEESSTTTT-
T ss_pred HHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc---ccccccccccccc-
Confidence 344566676666678899999999999999999999877799999999999999999999873 3399999998653
Q ss_pred CCCCchhhheecchhccCCC-----HHHHHHHHHhhcccCcEEEEEec
Q 021344 233 FASGFVDAVHAGAALHCWPS-----PSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~~d-----~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
.++++||+|+++--++.-.+ ...++++..+.|||||.+++...
T Consensus 94 ~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 94 LPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp CCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 33689999999866554433 36789999999999999987663
No 70
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.55 E-value=7.6e-14 Score=120.74 Aligned_cols=106 Identities=25% Similarity=0.363 Sum_probs=92.3
Q ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC-CCchhhheec
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAG 244 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~-~~~fD~V~~~ 244 (314)
.+.+|||+|||+|.++..+++.+. .++++|+++.+++.+++++...+. .++.+..+|+.+.+.. .++||+|++.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~D~i~~~ 119 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDPL---LKIEYRCTSVEDLAEKGAKSFDVVTCM 119 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcCC---CceEEEeCCHHHhhcCCCCCccEEEeh
Confidence 477999999999999999988765 799999999999999998876541 2688999998776543 3789999999
Q ss_pred chhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 245 ~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
++++|+.++..+++++.++|+|||.+++.+..
T Consensus 120 ~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 120 EVLEHVPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred hHHHhCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 99999999999999999999999999988754
No 71
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.51 E-value=3.4e-13 Score=114.56 Aligned_cols=116 Identities=16% Similarity=0.255 Sum_probs=93.0
Q ss_pred HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-
Q 021344 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL- 231 (314)
Q Consensus 154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l- 231 (314)
........+...++.+|||+|||+|.++..+++. ++..+|+++|+++.+++.++++++..+ ...++.++.+|+.+.
T Consensus 28 ~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g--~~~~v~~~~~d~~~~l 105 (198)
T PRK00377 28 IRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG--VLNNIVLIKGEAPEIL 105 (198)
T ss_pred HHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC--CCCCeEEEEechhhhH
Confidence 3334456677778899999999999999988765 445689999999999999999988765 236899999998653
Q ss_pred CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
+...++||.|++.. ...++..+++++.++|||||++++..
T Consensus 106 ~~~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 106 FTINEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred hhcCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEe
Confidence 33346899999854 24567889999999999999998755
No 72
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.51 E-value=2.4e-13 Score=125.26 Aligned_cols=122 Identities=14% Similarity=0.128 Sum_probs=97.1
Q ss_pred hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (314)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l 231 (314)
+.-.+.+.+.++...+++|||+|||+|.++..+++.++..+|+++|.|+.+++.++++++..+.....+++++..|....
T Consensus 214 D~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~ 293 (378)
T PRK15001 214 DIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG 293 (378)
T ss_pred ChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc
Confidence 44456778888776667999999999999999999988889999999999999999998766521124789998887542
Q ss_pred CCCCCchhhheecchhccC---CC--HHHHHHHHHhhcccCcEEEEEe
Q 021344 232 PFASGFVDAVHAGAALHCW---PS--PSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 232 p~~~~~fD~V~~~~vl~h~---~d--~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
+.+++||+|+++-.+|.. .+ ..++++++.++|||||.+++..
T Consensus 294 -~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 294 -VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred -CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 234689999997655532 22 2478999999999999999986
No 73
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.51 E-value=2.1e-13 Score=124.67 Aligned_cols=118 Identities=18% Similarity=0.220 Sum_probs=95.8
Q ss_pred hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (314)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l 231 (314)
+.-.+.+.+.+.....++|||+|||+|.++..+++.++..+++++|+|+.+++.++++++..+ ...+++.+|....
T Consensus 182 D~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~----l~~~~~~~D~~~~ 257 (342)
T PRK09489 182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANG----LEGEVFASNVFSD 257 (342)
T ss_pred CHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCEEEEcccccc
Confidence 334456666666555678999999999999999999877899999999999999999998866 3456777787542
Q ss_pred CCCCCchhhheecchhccCC-----CHHHHHHHHHhhcccCcEEEEEec
Q 021344 232 PFASGFVDAVHAGAALHCWP-----SPSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 232 p~~~~~fD~V~~~~vl~h~~-----d~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
.+++||+|+++-.+|+.. ....+++++.+.|||||.+++...
T Consensus 258 --~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 258 --IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred --cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 257899999998887632 346899999999999999998874
No 74
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.50 E-value=1.3e-13 Score=116.80 Aligned_cols=97 Identities=16% Similarity=0.310 Sum_probs=80.0
Q ss_pred HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-C-CCC
Q 021344 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L-PFA 234 (314)
Q Consensus 157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-l-p~~ 234 (314)
.+.+.++ ++.+|||+|||+|.++..+++.. ..+++|+|+++.+++.+++ .+++++.+|+.+ + +++
T Consensus 6 ~i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~----------~~~~~~~~d~~~~l~~~~ 72 (194)
T TIGR02081 6 SILNLIP--PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA----------RGVNVIQGDLDEGLEAFP 72 (194)
T ss_pred HHHHhcC--CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH----------cCCeEEEEEhhhcccccC
Confidence 4445544 46799999999999999887664 3478999999999998875 457888999865 4 466
Q ss_pred CCchhhheecchhccCCCHHHHHHHHHhhccc
Q 021344 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRS 266 (314)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~Lkp 266 (314)
+++||+|++.++++|+.|+..+++++.+++++
T Consensus 73 ~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 73 DKSFDYVILSQTLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred CCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence 78999999999999999999999999887654
No 75
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.49 E-value=6.5e-13 Score=112.63 Aligned_cols=116 Identities=14% Similarity=0.135 Sum_probs=90.7
Q ss_pred HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-CC
Q 021344 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP 232 (314)
Q Consensus 154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-lp 232 (314)
....+.+.+...++.+|||+|||+|.++..+++..+..+++++|+++.+++.++++++..+. .+++++.+|+.+ ++
T Consensus 28 v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~---~~v~~~~~d~~~~~~ 104 (196)
T PRK07402 28 VRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV---KNVEVIEGSAPECLA 104 (196)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC---CCeEEEECchHHHHh
Confidence 33456777777788999999999999999998776667999999999999999999887652 579999999854 22
Q ss_pred CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
.....+|.++... ..+...+++++.++|||||++++..+.
T Consensus 105 ~~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 105 QLAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred hCCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 2123456665432 235678999999999999999998843
No 76
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.48 E-value=4.2e-13 Score=116.50 Aligned_cols=108 Identities=22% Similarity=0.339 Sum_probs=84.4
Q ss_pred HHHHHHHhcc---CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344 155 FKMAQEYFKS---AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (314)
Q Consensus 155 ~~~l~~~l~~---~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l 231 (314)
.+.+.+.+.. .++.+|||||||+|.++..+++.+. .++|+|+|+.+++.|+++....+ ...++.+..+|+.
T Consensus 49 ~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~-- 122 (230)
T PRK07580 49 RDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAG--LAGNITFEVGDLE-- 122 (230)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC--CccCcEEEEcCch--
Confidence 3344444433 4577999999999999999998875 79999999999999999887755 2257899999853
Q ss_pred CCCCCchhhheecchhccCCCH--HHHHHHHHhhcccCcE
Q 021344 232 PFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGV 269 (314)
Q Consensus 232 p~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~ 269 (314)
..+++||+|++..+++|++++ ..+++++.+.++++++
T Consensus 123 -~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~ 161 (230)
T PRK07580 123 -SLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLI 161 (230)
T ss_pred -hccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEE
Confidence 335789999999999998755 4678888887654443
No 77
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.48 E-value=6.6e-13 Score=114.03 Aligned_cols=112 Identities=17% Similarity=0.132 Sum_probs=91.0
Q ss_pred HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (314)
Q Consensus 153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp 232 (314)
.....+.+.+...++.+|||+|||+|.++..+++... +++++|+++.+++.++++++..+. .+++++.+|.....
T Consensus 65 ~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~ 139 (212)
T PRK00312 65 YMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGL---HNVSVRHGDGWKGW 139 (212)
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCC---CceEEEECCcccCC
Confidence 3445666777777889999999999999988887764 899999999999999999887653 56999999986532
Q ss_pred CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344 233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
...++||+|++...++++ .+.+.+.|+|||++++...
T Consensus 140 ~~~~~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 140 PAYAPFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CcCCCcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 234789999998877665 3567889999999998774
No 78
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.48 E-value=1.1e-13 Score=107.16 Aligned_cols=106 Identities=23% Similarity=0.359 Sum_probs=87.5
Q ss_pred CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--CCCCchhhheec
Q 021344 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHAG 244 (314)
Q Consensus 167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--~~~~~fD~V~~~ 244 (314)
|.+|||+|||+|.++..+++.+ ..+++|+|+++..++.++.++...+ ...+++++++|+.+.. +.+++||+|+++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNG--LDDRVEVIVGDARDLPEPLPDGKFDLIVTN 77 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCT--TTTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHcc--CCceEEEEECchhhchhhccCceeEEEEEC
Confidence 4689999999999999999998 5699999999999999999998876 3568999999997765 678899999997
Q ss_pred chhccCC--------CHHHHHHHHHhhcccCcEEEEEec
Q 021344 245 AALHCWP--------SPSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 245 ~vl~h~~--------d~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
-...... ....+++++.++|||||.+++.++
T Consensus 78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp -STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 5544221 125789999999999999998874
No 79
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.47 E-value=3.6e-13 Score=115.18 Aligned_cols=100 Identities=21% Similarity=0.209 Sum_probs=79.9
Q ss_pred cCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--------CC
Q 021344 164 SAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FA 234 (314)
Q Consensus 164 ~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--------~~ 234 (314)
..++.+|||+|||+|.++..+++.. +...|+|+|+++. . ...++.++++|+...+ +.
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~------~--------~~~~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM------D--------PIVGVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc------c--------CCCCcEEEecCCCChHHHHHHHHHhC
Confidence 4567899999999999999998874 3458999999881 1 1256899999998853 56
Q ss_pred CCchhhheecchhccCCCH-----------HHHHHHHHhhcccCcEEEEEeccc
Q 021344 235 SGFVDAVHAGAALHCWPSP-----------SNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~-----------~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
+++||+|++..+.++..++ ..+|+++.++|||||.+++..+..
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 7889999998776665443 358999999999999999987543
No 80
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.47 E-value=2.3e-13 Score=109.76 Aligned_cols=107 Identities=22% Similarity=0.381 Sum_probs=90.0
Q ss_pred CeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecchh
Q 021344 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL 247 (314)
Q Consensus 168 ~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl 247 (314)
.+|||+|||+|.++..|++.+....++|+|+|+.+++.|++..+..+ ....|+|.+.|+.+..+..++||+|+--..+
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~--~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG--FSNEIRFQQLDITDPDFLSGQFDLVLDKGTL 146 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC--CCcceeEEEeeccCCcccccceeEEeecCce
Confidence 49999999999999999999876679999999999999999988887 3455999999998877778889999876665
Q ss_pred ccCC---C-----HHHHHHHHHhhcccCcEEEEEecc
Q 021344 248 HCWP---S-----PSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 248 ~h~~---d-----~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
.-+. | +...+..+.+.|+|||+++|...+
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN 183 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN 183 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCCCcEEEEEecC
Confidence 5432 1 245788899999999999998843
No 81
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.46 E-value=3.6e-13 Score=111.86 Aligned_cols=115 Identities=27% Similarity=0.366 Sum_probs=91.6
Q ss_pred HHHHHHHHHhccCC--CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC-C
Q 021344 153 EEFKMAQEYFKSAQ--GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-C 229 (314)
Q Consensus 153 ~~~~~l~~~l~~~~--~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~-~ 229 (314)
++.+...+.+.... +..|||||||+|..+..+.+.|. ..+|+|+|+.|++.|.+.-- .-.++.+|+ +
T Consensus 35 em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh--~wiGvDiSpsML~~a~~~e~--------egdlil~DMG~ 104 (270)
T KOG1541|consen 35 EMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGH--QWIGVDISPSMLEQAVEREL--------EGDLILCDMGE 104 (270)
T ss_pred HHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCc--eEEeecCCHHHHHHHHHhhh--------hcCeeeeecCC
Confidence 44555566665544 77899999999999999999886 99999999999999997321 135677777 5
Q ss_pred CCCCCCCchhhheecchhccCC-------CHH----HHHHHHHhhcccCcEEEEEeccc
Q 021344 230 RLPFASGFVDAVHAGAALHCWP-------SPS----NAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 230 ~lp~~~~~fD~V~~~~vl~h~~-------d~~----~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
.+||..++||.|++..+++++- +|. .|+..++.+|++|++.++..+-.
T Consensus 105 GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe 163 (270)
T KOG1541|consen 105 GLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPE 163 (270)
T ss_pred CCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEeccc
Confidence 6899999999999988877653 333 57888999999999999987543
No 82
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.46 E-value=1.1e-12 Score=118.49 Aligned_cols=113 Identities=20% Similarity=0.259 Sum_probs=84.6
Q ss_pred HHHHHHHHHhcc---CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCC--CCCCeEEEEec
Q 021344 153 EEFKMAQEYFKS---AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVRAD 227 (314)
Q Consensus 153 ~~~~~l~~~l~~---~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~--~~~~v~~~~~d 227 (314)
...+.+.+++.. .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++.+..... ...++.+..+|
T Consensus 128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~--~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~D 205 (315)
T PLN02585 128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGA--IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAND 205 (315)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcc
Confidence 344555555543 2577999999999999999999865 9999999999999999988754200 12467888888
Q ss_pred CCCCCCCCCchhhheecchhccCCCHH--HHHHHHHhhcccCcEEE
Q 021344 228 VCRLPFASGFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFV 271 (314)
Q Consensus 228 ~~~lp~~~~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpGG~l~ 271 (314)
+..+ +++||+|++..+++|+++.. .+++.+.+ +.+||.++
T Consensus 206 l~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 206 LESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred hhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 7654 57899999999999998753 45666664 45565544
No 83
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.46 E-value=2.3e-13 Score=111.55 Aligned_cols=85 Identities=24% Similarity=0.259 Sum_probs=73.9
Q ss_pred EEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEE
Q 021344 194 VALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGT 273 (314)
Q Consensus 194 ~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~ 273 (314)
+|+|+|+.|++.|+++.+........+++++++|+.++|+++++||+|++.++++|++|+..++++++|+|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 48999999999998776532210125799999999999999999999999999999999999999999999999999999
Q ss_pred ecccC
Q 021344 274 TFLRY 278 (314)
Q Consensus 274 ~~~~~ 278 (314)
++...
T Consensus 81 d~~~~ 85 (160)
T PLN02232 81 DFNKS 85 (160)
T ss_pred ECCCC
Confidence 98753
No 84
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.45 E-value=1.5e-12 Score=116.66 Aligned_cols=120 Identities=16% Similarity=0.227 Sum_probs=91.0
Q ss_pred hHHHHHHHHHhc-cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344 152 DEEFKMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (314)
Q Consensus 152 ~~~~~~l~~~l~-~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~ 230 (314)
+..++.+...+. ..+..+|||+|||+|.++..++...+..+++|+|+|+.+++.|+++++..+. ..++.++.+|+.+
T Consensus 99 e~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~--~~~v~~~~~d~~~ 176 (284)
T TIGR00536 99 EELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL--EHRVEFIQSNLFE 176 (284)
T ss_pred HHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECchhc
Confidence 344444444332 2223689999999999999999988777999999999999999999887762 3459999999865
Q ss_pred CCCCCCchhhheec-------------chhccCC------------CHHHHHHHHHhhcccCcEEEEEe
Q 021344 231 LPFASGFVDAVHAG-------------AALHCWP------------SPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 231 lp~~~~~fD~V~~~-------------~vl~h~~------------d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
+++.++||+|+++ .++.|-+ ....+++++.+.|+|||++++..
T Consensus 177 -~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 177 -PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred -cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 3444589999985 2333332 23468899999999999998877
No 85
>PRK14968 putative methyltransferase; Provisional
Probab=99.45 E-value=2.1e-12 Score=108.40 Aligned_cols=116 Identities=21% Similarity=0.271 Sum_probs=88.4
Q ss_pred HHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC
Q 021344 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (314)
Q Consensus 156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~ 235 (314)
..+.+.+...++.+|||+|||+|.++..+++.+ .+++++|+|+.+++.+++++...+. ...++.++.+|+.+ ++.+
T Consensus 13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~~~~d~~~-~~~~ 88 (188)
T PRK14968 13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNG--KKVVGVDINPYAVECAKCNAKLNNI-RNNGVEVIRSDLFE-PFRG 88 (188)
T ss_pred HHHHHhhhccCCCEEEEEccccCHHHHHHHhhc--ceEEEEECCHHHHHHHHHHHHHcCC-CCcceEEEeccccc-cccc
Confidence 345555555677899999999999999999885 4999999999999999998877652 11128899999865 3445
Q ss_pred CchhhheecchhccCC---------------------CHHHHHHHHHhhcccCcEEEEEec
Q 021344 236 GFVDAVHAGAALHCWP---------------------SPSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 236 ~~fD~V~~~~vl~h~~---------------------d~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
++||+|+++..+.+.. ....+++++.++|||||.+++...
T Consensus 89 ~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 89 DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred cCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 5899999865433211 134689999999999999988764
No 86
>PRK04266 fibrillarin; Provisional
Probab=99.45 E-value=1.5e-12 Score=112.48 Aligned_cols=103 Identities=17% Similarity=0.240 Sum_probs=81.4
Q ss_pred HhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC----CCCCC
Q 021344 161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASG 236 (314)
Q Consensus 161 ~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l----p~~~~ 236 (314)
.+...++.+|||+|||+|.++..+++.....+|+|+|+++.+++.+.++++.. .++.++.+|+... ++ .+
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-----~nv~~i~~D~~~~~~~~~l-~~ 140 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-----KNIIPILADARKPERYAHV-VE 140 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-----CCcEEEECCCCCcchhhhc-cc
Confidence 47777899999999999999999998754458999999999999887765532 5789999998642 22 24
Q ss_pred chhhheecchhccCCCH---HHHHHHHHhhcccCcEEEEEe
Q 021344 237 FVDAVHAGAALHCWPSP---SNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 237 ~fD~V~~~~vl~h~~d~---~~~l~~i~r~LkpGG~l~i~~ 274 (314)
+||+|++. +.++ ..+++++.++|||||.+++..
T Consensus 141 ~~D~i~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v 176 (226)
T PRK04266 141 KVDVIYQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAI 176 (226)
T ss_pred cCCEEEEC-----CCChhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 69999853 3344 346899999999999999953
No 87
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.44 E-value=2.7e-12 Score=105.18 Aligned_cols=118 Identities=19% Similarity=0.240 Sum_probs=100.4
Q ss_pred hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (314)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l 231 (314)
.+........|.+.++.+++|||||+|..+..++..++..+++++|-++.+++..+++.+..+ .+|+.++.+++.+.
T Consensus 20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg---~~n~~vv~g~Ap~~ 96 (187)
T COG2242 20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG---VDNLEVVEGDAPEA 96 (187)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC---CCcEEEEeccchHh
Confidence 344556677888999999999999999999999988899999999999999999999999987 48999999999653
Q ss_pred CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
--...+||.|+.... .+...+|+.+...|||||++++....
T Consensus 97 L~~~~~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 97 LPDLPSPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred hcCCCCCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 211227999999887 35678899999999999999987743
No 88
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.43 E-value=2e-12 Score=118.36 Aligned_cols=119 Identities=20% Similarity=0.267 Sum_probs=95.6
Q ss_pred HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (314)
Q Consensus 153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp 232 (314)
.....+.......++.+|||+|||+|.++..++..+. +++|+|+++.+++.++++++..+. .++.++.+|+.++|
T Consensus 169 ~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~--~v~g~Di~~~~~~~a~~nl~~~g~---~~i~~~~~D~~~l~ 243 (329)
T TIGR01177 169 KLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA--KVIGCDIDWKMVAGARINLEHYGI---EDFFVKRGDATKLP 243 (329)
T ss_pred HHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC--eEEEEcCCHHHHHHHHHHHHHhCC---CCCeEEecchhcCC
Confidence 3445555666667788999999999999988887765 999999999999999999988763 44889999999999
Q ss_pred CCCCchhhheecchh------c-c-CCC-HHHHHHHHHhhcccCcEEEEEecc
Q 021344 233 FASGFVDAVHAGAAL------H-C-WPS-PSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 233 ~~~~~fD~V~~~~vl------~-h-~~d-~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
+.+++||+|++.--. . + ..+ ...+++++.++|||||++++..+.
T Consensus 244 ~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 244 LSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred cccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence 888899999985211 1 1 101 368899999999999999988854
No 89
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.43 E-value=1.7e-12 Score=116.59 Aligned_cols=103 Identities=20% Similarity=0.306 Sum_probs=83.0
Q ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~ 245 (314)
++.+|||+|||+|.++..+++.+ ..+|+|+|+++.+++.+++++...+ ...++.+...+... ..+++||+|+++.
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n~--~~~~~~~~~~~~~~--~~~~~fDlVvan~ 233 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELNQ--VSDRLQVKLIYLEQ--PIEGKADVIVANI 233 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcC--CCcceEEEeccccc--ccCCCceEEEEec
Confidence 57899999999999999888876 3589999999999999999988766 23456666666332 3357899999976
Q ss_pred hhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 246 vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
..++ ...++.++.++|||||+++++...
T Consensus 234 ~~~~---l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 234 LAEV---IKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred CHHH---HHHHHHHHHHHcCCCcEEEEEeCc
Confidence 5443 357899999999999999998854
No 90
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.42 E-value=6.1e-13 Score=112.23 Aligned_cols=104 Identities=24% Similarity=0.264 Sum_probs=79.5
Q ss_pred eEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecchhc
Q 021344 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH 248 (314)
Q Consensus 169 ~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~ 248 (314)
.++|+|||+|..++.++..+. +|+|+|+|+.|++.|++...... ......+...+..++--.+++.|+|++...+|
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y--~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~H 111 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTY--CHTPSTMSSDEMVDLLGGEESVDLITAAQAVH 111 (261)
T ss_pred eEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCccc--ccCCccccccccccccCCCcceeeehhhhhHH
Confidence 899999999988888888876 99999999999999988433321 11223333333333333488999999999999
Q ss_pred cCCCHHHHHHHHHhhcccC-cEEEEEeccc
Q 021344 249 CWPSPSNAVAEISRILRSG-GVFVGTTFLR 277 (314)
Q Consensus 249 h~~d~~~~l~~i~r~LkpG-G~l~i~~~~~ 277 (314)
++ |...+++++.|+||+. |.+.+..+..
T Consensus 112 WF-dle~fy~~~~rvLRk~Gg~iavW~Y~d 140 (261)
T KOG3010|consen 112 WF-DLERFYKEAYRVLRKDGGLIAVWNYND 140 (261)
T ss_pred hh-chHHHHHHHHHHcCCCCCEEEEEEccC
Confidence 87 6778899999999875 5888888774
No 91
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.42 E-value=4.4e-12 Score=108.73 Aligned_cols=113 Identities=13% Similarity=0.167 Sum_probs=90.6
Q ss_pred ccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc---------CCCCCCCeEEEEecCCCCCC
Q 021344 163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD---------NTILTSNLALVRADVCRLPF 233 (314)
Q Consensus 163 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---------~~~~~~~v~~~~~d~~~lp~ 233 (314)
...++.+||+.|||.|..+..|++.|. +|+|+|+|+.+++.+.+..... ......+++++++|+.+++.
T Consensus 40 ~~~~~~rvLvPgCGkg~D~~~LA~~G~--~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~ 117 (226)
T PRK13256 40 NINDSSVCLIPMCGCSIDMLFFLSKGV--KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPK 117 (226)
T ss_pred CCCCCCeEEEeCCCChHHHHHHHhCCC--cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCc
Confidence 334568999999999999999999998 8999999999999886622100 00023589999999999863
Q ss_pred C---CCchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEeccc
Q 021344 234 A---SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 234 ~---~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
. .++||+|+-...|.+++.. .+..+.+.++|+|||.+++.++..
T Consensus 118 ~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 118 IANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred cccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 2 2579999999999999654 478999999999999998887753
No 92
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.42 E-value=3.5e-12 Score=114.18 Aligned_cols=107 Identities=21% Similarity=0.239 Sum_probs=85.0
Q ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (314)
Q Consensus 165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~ 244 (314)
.++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|+++++..+ ...++.++.+|+.+ ++++++||+|+++
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~--~~~~i~~~~~D~~~-~~~~~~fD~Iv~N 196 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHG--LEDRVTLIQSDLFA-ALPGRKYDLIVSN 196 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECchhh-ccCCCCccEEEEC
Confidence 34578999999999999999998777799999999999999999998876 23579999999854 2345689999985
Q ss_pred c------hhccC-----CCH--------------HHHHHHHHhhcccCcEEEEEe
Q 021344 245 A------ALHCW-----PSP--------------SNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 245 ~------vl~h~-----~d~--------------~~~l~~i~r~LkpGG~l~i~~ 274 (314)
- .+.++ .+| ..+++++.++|+|||++++..
T Consensus 197 PPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 197 PPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred CCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 1 11111 112 467888999999999999877
No 93
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.42 E-value=3.1e-12 Score=115.55 Aligned_cols=110 Identities=18% Similarity=0.208 Sum_probs=84.5
Q ss_pred CCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-CCCCCC----chh
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASG----FVD 239 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-lp~~~~----~fD 239 (314)
++.+|||+|||+|..+..+++... ..+++++|+|+.|++.+++++.... ...++.++++|+.+ +++... ...
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~--p~~~v~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY--PQLEVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC--CCceEEEEEEcccchhhhhcccccCCeE
Confidence 467899999999999999998854 3589999999999999999877543 23567889999876 343332 233
Q ss_pred hheecchhccCCC--HHHHHHHHHhhcccCcEEEEEeccc
Q 021344 240 AVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 240 ~V~~~~vl~h~~d--~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
++++...++|++. ...+|++++++|+|||.+++.....
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence 4555567888764 3478999999999999999866544
No 94
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.41 E-value=3.5e-12 Score=112.14 Aligned_cols=117 Identities=22% Similarity=0.292 Sum_probs=90.3
Q ss_pred HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (314)
Q Consensus 153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp 232 (314)
...+.+.+.+.. .+.+|||+|||+|.++..+++..+..+++|+|+++.+++.+++++...+. .++.++.+|+.+ +
T Consensus 75 ~l~~~~l~~~~~-~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~---~~~~~~~~d~~~-~ 149 (251)
T TIGR03534 75 ELVEAALERLKK-GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL---DNVTFLQSDWFE-P 149 (251)
T ss_pred HHHHHHHHhccc-CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC---CeEEEEECchhc-c
Confidence 344455555443 45689999999999999999987777999999999999999999887653 479999999866 4
Q ss_pred CCCCchhhheecch------hccCC--------------------CHHHHHHHHHhhcccCcEEEEEe
Q 021344 233 FASGFVDAVHAGAA------LHCWP--------------------SPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 233 ~~~~~fD~V~~~~v------l~h~~--------------------d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
+++++||+|+++-. ++++. ....+++++.++|+|||.+++..
T Consensus 150 ~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 150 LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 55788999998422 11111 11367899999999999999865
No 95
>PRK14967 putative methyltransferase; Provisional
Probab=99.41 E-value=3.5e-12 Score=110.37 Aligned_cols=107 Identities=20% Similarity=0.203 Sum_probs=83.7
Q ss_pred ccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhe
Q 021344 163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 242 (314)
Q Consensus 163 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~ 242 (314)
...++.+|||+|||+|.++..+++.+ ..+++++|+++.+++.+++++...+ .++.++.+|+... +++++||+|+
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~----~~~~~~~~d~~~~-~~~~~fD~Vi 106 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAG----VDVDVRRGDWARA-VEFRPFDVVV 106 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhC----CeeEEEECchhhh-ccCCCeeEEE
Confidence 34567899999999999999998875 3489999999999999999887765 4688899998653 4567899999
Q ss_pred ecchhccCC---------------------CHHHHHHHHHhhcccCcEEEEEec
Q 021344 243 AGAALHCWP---------------------SPSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 243 ~~~vl~h~~---------------------d~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
++-....-. ....+++++.++|||||++++...
T Consensus 107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 863322111 034578899999999999998653
No 96
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=3.9e-12 Score=106.49 Aligned_cols=111 Identities=17% Similarity=0.146 Sum_probs=94.0
Q ss_pred HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (314)
Q Consensus 154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~ 233 (314)
....+.+.+..+++.+|||||||+|+.+.-+++... +|+.+|..+...+.|+++++..+ ..|+.++++|...---
T Consensus 60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg---~~nV~v~~gDG~~G~~ 134 (209)
T COG2518 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLG---YENVTVRHGDGSKGWP 134 (209)
T ss_pred HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcC---CCceEEEECCcccCCC
Confidence 456788899999999999999999999999999876 99999999999999999999987 3679999999876332
Q ss_pred CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
+...||.|+.......+|+. +.+-||+||++++-.-
T Consensus 135 ~~aPyD~I~Vtaaa~~vP~~------Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 135 EEAPYDRIIVTAAAPEVPEA------LLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCcCEEEEeeccCCCCHH------HHHhcccCCEEEEEEc
Confidence 45789999998887776443 4456899999998663
No 97
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.39 E-value=4.3e-12 Score=120.09 Aligned_cols=129 Identities=18% Similarity=0.216 Sum_probs=99.7
Q ss_pred HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (314)
Q Consensus 153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp 232 (314)
.....+...+...++.+|||+|||+|..+..+++..+..+++++|+++.+++.++++++..+. ...+.+..+|....+
T Consensus 225 ~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~--~~~v~~~~~d~~~~~ 302 (426)
T TIGR00563 225 ASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL--TIKAETKDGDGRGPS 302 (426)
T ss_pred HHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEecccccccc
Confidence 344566667788889999999999999999998875456999999999999999999998763 223444677766544
Q ss_pred C--CCCchhhhee------cchhccCCC----------------HHHHHHHHHhhcccCcEEEEEecccCCCCCc
Q 021344 233 F--ASGFVDAVHA------GAALHCWPS----------------PSNAVAEISRILRSGGVFVGTTFLRYTSSTS 283 (314)
Q Consensus 233 ~--~~~~fD~V~~------~~vl~h~~d----------------~~~~l~~i~r~LkpGG~l~i~~~~~~~~~~~ 283 (314)
. ..++||.|++ .+++.+.++ ...+|+++.++|||||+++.++.+-.+..+.
T Consensus 303 ~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene 377 (426)
T TIGR00563 303 QWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENS 377 (426)
T ss_pred ccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCH
Confidence 3 4578999985 355666555 2478999999999999999998776544443
No 98
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.38 E-value=4.1e-12 Score=120.43 Aligned_cols=125 Identities=18% Similarity=0.270 Sum_probs=99.7
Q ss_pred hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (314)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~ 230 (314)
+.....+...+...++.+|||+|||+|..+..+++.. ...+|+++|+++.+++.++++++..+. .++.++.+|+..
T Consensus 238 d~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~---~~v~~~~~D~~~ 314 (434)
T PRK14901 238 DRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL---KSIKILAADSRN 314 (434)
T ss_pred CHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC---CeEEEEeCChhh
Confidence 3444556666777788999999999999999988863 345899999999999999999988763 579999999987
Q ss_pred CC----CCCCchhhheec------chhccCCC----------------HHHHHHHHHhhcccCcEEEEEecccCC
Q 021344 231 LP----FASGFVDAVHAG------AALHCWPS----------------PSNAVAEISRILRSGGVFVGTTFLRYT 279 (314)
Q Consensus 231 lp----~~~~~fD~V~~~------~vl~h~~d----------------~~~~l~~i~r~LkpGG~l~i~~~~~~~ 279 (314)
++ +..++||.|++. +++.+-++ ...+|.++.++|||||+++.+|.+-.+
T Consensus 315 ~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~ 389 (434)
T PRK14901 315 LLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP 389 (434)
T ss_pred cccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 65 445789999963 45555444 246799999999999999998866543
No 99
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.37 E-value=4.2e-12 Score=114.94 Aligned_cols=112 Identities=13% Similarity=0.117 Sum_probs=89.2
Q ss_pred HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (314)
Q Consensus 154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp 232 (314)
....+.+.+...++.+|||||||+|.++..+++... ...|+++|+++.+++.|+++++..+. .++.++.+|+...+
T Consensus 68 l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~---~nV~~i~gD~~~~~ 144 (322)
T PRK13943 68 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI---ENVIFVCGDGYYGV 144 (322)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEeCChhhcc
Confidence 334556666677788999999999999999988753 24799999999999999999887763 67999999987655
Q ss_pred CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
...++||+|++...++++ ...+.+.|+|||++++..
T Consensus 145 ~~~~~fD~Ii~~~g~~~i------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 145 PEFAPYDVIFVTVGVDEV------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cccCCccEEEECCchHHh------HHHHHHhcCCCCEEEEEe
Confidence 445689999998766654 234678899999988854
No 100
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.37 E-value=8.7e-12 Score=112.66 Aligned_cols=104 Identities=21% Similarity=0.242 Sum_probs=83.5
Q ss_pred CeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc--
Q 021344 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA-- 245 (314)
Q Consensus 168 ~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~-- 245 (314)
.+|||+|||+|.++..++...+..+++++|+|+.+++.|+++++..+ ...+++++.+|+.+ ++++++||+|+++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~--l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPy 211 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHG--LEDRVTLIESDLFA-ALPGRRYDLIVSNPPY 211 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC--CCCcEEEEECchhh-hCCCCCccEEEECCCC
Confidence 68999999999999999998877899999999999999999998776 23579999999854 23356899999851
Q ss_pred ----h-------hccCCC------------HHHHHHHHHhhcccCcEEEEEe
Q 021344 246 ----A-------LHCWPS------------PSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 246 ----v-------l~h~~d------------~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
. ++|-+. ...+++++.+.|+|||++++..
T Consensus 212 i~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 212 VDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred CCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 1 112211 1467899999999999999876
No 101
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.37 E-value=2e-12 Score=110.13 Aligned_cols=112 Identities=18% Similarity=0.202 Sum_probs=86.6
Q ss_pred HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (314)
Q Consensus 154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp 232 (314)
....+.+.+...++.+|||||||+|+++..++.. ++...|+++|.++..++.|++++...+. .++.++.+|....-
T Consensus 60 ~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~---~nv~~~~gdg~~g~ 136 (209)
T PF01135_consen 60 MVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI---DNVEVVVGDGSEGW 136 (209)
T ss_dssp HHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT---HSEEEEES-GGGTT
T ss_pred HHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc---CceeEEEcchhhcc
Confidence 4557778888999999999999999999998887 4445799999999999999999998763 69999999986533
Q ss_pred CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
...+.||.|++......+ | ..+.+.||+||++++-.
T Consensus 137 ~~~apfD~I~v~~a~~~i--p----~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 137 PEEAPFDRIIVTAAVPEI--P----EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp GGG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEE
T ss_pred ccCCCcCEEEEeeccchH--H----HHHHHhcCCCcEEEEEE
Confidence 345689999998887654 2 33566799999999865
No 102
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.37 E-value=4.6e-12 Score=94.50 Aligned_cols=101 Identities=27% Similarity=0.404 Sum_probs=85.0
Q ss_pred eEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC-CCCchhhheecchh
Q 021344 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-ASGFVDAVHAGAAL 247 (314)
Q Consensus 169 ~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~-~~~~fD~V~~~~vl 247 (314)
+++|+|||.|.++..+.+ ....+++++|+++..+..+++..... ...++.++..|+.+... ..++||+|++..++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAAL---LADNVEVLKGDAEELPPEADESFDVIISDPPL 76 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcc---cccceEEEEcChhhhccccCCceEEEEEccce
Confidence 589999999999999988 34569999999999999988543332 24679999999887653 45789999999999
Q ss_pred cc-CCCHHHHHHHHHhhcccCcEEEEE
Q 021344 248 HC-WPSPSNAVAEISRILRSGGVFVGT 273 (314)
Q Consensus 248 ~h-~~d~~~~l~~i~r~LkpGG~l~i~ 273 (314)
++ ..+...+++.+.+.|+|||.+++.
T Consensus 77 ~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 77 HHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 99 778889999999999999999876
No 103
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.37 E-value=5.3e-12 Score=111.09 Aligned_cols=98 Identities=22% Similarity=0.359 Sum_probs=75.8
Q ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (314)
Q Consensus 165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~ 244 (314)
.++.+|||+|||+|.++..+++.+. .+++|+|+|+.+++.|+++++..+. ...+.+..+ +.+||+|+++
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~--~~~~~~~~~--------~~~fD~Vvan 186 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGV--ELNVYLPQG--------DLKADVIVAN 186 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCC--CceEEEccC--------CCCcCEEEEc
Confidence 3578999999999999998888775 3699999999999999999887652 123333222 2279999986
Q ss_pred chhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 245 ~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
...+. ...+++++.++|||||++++....
T Consensus 187 i~~~~---~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 187 ILANP---LLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred CcHHH---HHHHHHHHHHhcCCCcEEEEEECc
Confidence 54322 357789999999999999998754
No 104
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.35 E-value=1.2e-11 Score=116.93 Aligned_cols=122 Identities=16% Similarity=0.244 Sum_probs=94.7
Q ss_pred HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-
Q 021344 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP- 232 (314)
Q Consensus 154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp- 232 (314)
....+...+...++.+|||+|||+|..+..+++.....+|+++|+++.+++.++++++..+ .++.++.+|+.+++
T Consensus 232 ~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g----~~~~~~~~D~~~~~~ 307 (427)
T PRK10901 232 AAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLG----LKATVIVGDARDPAQ 307 (427)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEcCcccchh
Confidence 3345556677778999999999999999999988755699999999999999999998876 34789999997754
Q ss_pred -CCCCchhhheecc------hhccCC------CH----------HHHHHHHHhhcccCcEEEEEecccCC
Q 021344 233 -FASGFVDAVHAGA------ALHCWP------SP----------SNAVAEISRILRSGGVFVGTTFLRYT 279 (314)
Q Consensus 233 -~~~~~fD~V~~~~------vl~h~~------d~----------~~~l~~i~r~LkpGG~l~i~~~~~~~ 279 (314)
+..++||.|++.- ++.+-+ .+ ..+|+.+.++|||||++++++.+-.+
T Consensus 308 ~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~ 377 (427)
T PRK10901 308 WWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILP 377 (427)
T ss_pred hcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 3356899999422 222211 11 26899999999999999998865543
No 105
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.8e-11 Score=104.78 Aligned_cols=116 Identities=21% Similarity=0.271 Sum_probs=101.0
Q ss_pred HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (314)
Q Consensus 153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l 231 (314)
..+.++...+...++.+|||.|.|+|.++..|+.. ++..+|+.+|+.++..+.|+++++..++ ..++++..+|+.+.
T Consensus 81 KD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l--~d~v~~~~~Dv~~~ 158 (256)
T COG2519 81 KDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL--GDRVTLKLGDVREG 158 (256)
T ss_pred CCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc--ccceEEEecccccc
Confidence 44567888899999999999999999999999964 6667999999999999999999999873 45699999999876
Q ss_pred CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
-+.+ .||+|+.. +++|..++..+.++|||||.+++..+.
T Consensus 159 ~~~~-~vDav~LD-----mp~PW~~le~~~~~Lkpgg~~~~y~P~ 197 (256)
T COG2519 159 IDEE-DVDAVFLD-----LPDPWNVLEHVSDALKPGGVVVVYSPT 197 (256)
T ss_pred cccc-ccCEEEEc-----CCChHHHHHHHHHHhCCCcEEEEEcCC
Confidence 6554 79999875 689999999999999999999988854
No 106
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.33 E-value=2.2e-11 Score=106.66 Aligned_cols=113 Identities=20% Similarity=0.306 Sum_probs=93.2
Q ss_pred HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCC
Q 021344 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236 (314)
Q Consensus 157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~ 236 (314)
.+....+.....+|||||+|.|.++..+++..|+.+++.+|. |..++.+++ ..+++++.+|+. .+++.
T Consensus 91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---------~~rv~~~~gd~f-~~~P~- 158 (241)
T PF00891_consen 91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---------ADRVEFVPGDFF-DPLPV- 158 (241)
T ss_dssp HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---------TTTEEEEES-TT-TCCSS-
T ss_pred hhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---------ccccccccccHH-hhhcc-
Confidence 444555666677999999999999999999999999999998 888888887 279999999998 56665
Q ss_pred chhhheecchhccCCCHH--HHHHHHHhhcccC--cEEEEEecccCCCCC
Q 021344 237 FVDAVHAGAALHCWPSPS--NAVAEISRILRSG--GVFVGTTFLRYTSST 282 (314)
Q Consensus 237 ~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpG--G~l~i~~~~~~~~~~ 282 (314)
+|+|++.++||+++|.+ .+|+++++.|+|| |+|+|.+....+...
T Consensus 159 -~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~ 207 (241)
T PF00891_consen 159 -ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRT 207 (241)
T ss_dssp -ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSS
T ss_pred -ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCC
Confidence 99999999999998775 7899999999999 999999887654433
No 107
>PRK00811 spermidine synthase; Provisional
Probab=99.33 E-value=2e-11 Score=109.25 Aligned_cols=109 Identities=15% Similarity=0.225 Sum_probs=83.7
Q ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCC--CCCCeEEEEecCCCC-CCCCCchhhhe
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVRADVCRL-PFASGFVDAVH 242 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~--~~~~v~~~~~d~~~l-p~~~~~fD~V~ 242 (314)
++.+||+||||+|..++.+.+.....+|+++|+++.+++.|++.+...... ...+++++.+|+... ...+++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 467999999999999999998744568999999999999999987642210 246899999998652 33467899999
Q ss_pred ecchhccCCC----HHHHHHHHHhhcccCcEEEEEe
Q 021344 243 AGAALHCWPS----PSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 243 ~~~vl~h~~d----~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
+...-.+.+. ...+++.+.+.|+|||++++..
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 8643222111 2578899999999999998765
No 108
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.33 E-value=3.3e-11 Score=107.51 Aligned_cols=119 Identities=21% Similarity=0.271 Sum_probs=89.7
Q ss_pred hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (314)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l 231 (314)
+...+.+.......++.+|||+|||+|.++..++...+..+++|+|+++.+++.+++++.. . ...++.++.+|+..
T Consensus 94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~-~--~~~~i~~~~~d~~~- 169 (275)
T PRK09328 94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKH-G--LGARVEFLQGDWFE- 169 (275)
T ss_pred HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh-C--CCCcEEEEEccccC-
Confidence 3444555544555567899999999999999999988777999999999999999998872 1 23689999999854
Q ss_pred CCCCCchhhheecch------hc--------cC------------CCHHHHHHHHHhhcccCcEEEEEe
Q 021344 232 PFASGFVDAVHAGAA------LH--------CW------------PSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 232 p~~~~~fD~V~~~~v------l~--------h~------------~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
++.+++||+|+++-. ++ |- .....+++++.++|||||++++..
T Consensus 170 ~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 170 PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 233578999998421 11 11 112467888889999999999865
No 109
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.32 E-value=1.2e-11 Score=104.40 Aligned_cols=99 Identities=22% Similarity=0.449 Sum_probs=82.2
Q ss_pred CeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-CC--CCCCchhhheec
Q 021344 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP--FASGFVDAVHAG 244 (314)
Q Consensus 168 ~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-lp--~~~~~fD~V~~~ 244 (314)
..+||||||.|.++..++...|+..++|+|+....+..+.+++...++ .|+.++++|+.. +. ++++++|.|+..
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l---~Nv~~~~~da~~~l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL---KNVRFLRGDARELLRRLFPPGSVDRIYIN 95 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT---SSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc---cceEEEEccHHHHHhhcccCCchheEEEe
Confidence 389999999999999999999999999999999999999999988864 899999999977 22 456788888875
Q ss_pred chhccCCCH-------------HHHHHHHHhhcccCcEEEEEe
Q 021344 245 AALHCWPSP-------------SNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 245 ~vl~h~~d~-------------~~~l~~i~r~LkpGG~l~i~~ 274 (314)
+ ||| ..+++.+.++|+|||.+.+.|
T Consensus 96 F-----PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 96 F-----PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp S----------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred C-----CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 4 666 368999999999999999988
No 110
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.32 E-value=1.7e-11 Score=115.92 Aligned_cols=125 Identities=16% Similarity=0.211 Sum_probs=96.9
Q ss_pred HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-
Q 021344 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP- 232 (314)
Q Consensus 155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp- 232 (314)
...+...+...++.+|||+|||+|..+.+++... ...+|+++|+++.+++.++++++..+. .++.++.+|...++
T Consensus 226 s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~---~~v~~~~~Da~~l~~ 302 (431)
T PRK14903 226 SQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL---SSIEIKIADAERLTE 302 (431)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC---CeEEEEECchhhhhh
Confidence 3455556777788999999999999998888763 345999999999999999999988763 56899999998765
Q ss_pred CCCCchhhheec------chhccCCC----------------HHHHHHHHHhhcccCcEEEEEecccCCCCC
Q 021344 233 FASGFVDAVHAG------AALHCWPS----------------PSNAVAEISRILRSGGVFVGTTFLRYTSST 282 (314)
Q Consensus 233 ~~~~~fD~V~~~------~vl~h~~d----------------~~~~l~~i~r~LkpGG~l~i~~~~~~~~~~ 282 (314)
+.+++||.|++. +++.+-++ ..++|.++.+.|||||+++.+|.+..+..+
T Consensus 303 ~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEn 374 (431)
T PRK14903 303 YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEEN 374 (431)
T ss_pred hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhC
Confidence 446789999862 22332221 135799999999999999999987654443
No 111
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.31 E-value=1.1e-11 Score=106.76 Aligned_cols=116 Identities=12% Similarity=0.241 Sum_probs=94.9
Q ss_pred HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--CC
Q 021344 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FA 234 (314)
Q Consensus 157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--~~ 234 (314)
++..+......++|||+|||+|..+..++++....+++|||+.+.+.+.|+++++..+ ...+++++++|+.+.. ..
T Consensus 35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~--l~~ri~v~~~Di~~~~~~~~ 112 (248)
T COG4123 35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNP--LEERIQVIEADIKEFLKALV 112 (248)
T ss_pred HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCc--chhceeEehhhHHHhhhccc
Confidence 4556666666889999999999999999999767899999999999999999999987 5689999999997753 33
Q ss_pred CCchhhheecchhccC------------------CCHHHHHHHHHhhcccCcEEEEEe
Q 021344 235 SGFVDAVHAGAALHCW------------------PSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 235 ~~~fD~V~~~~vl~h~------------------~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
..+||+|+|+=-..-. .+.+.+++...++|||||.+.+..
T Consensus 113 ~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 113 FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 4479999995221110 134578999999999999999887
No 112
>PRK04457 spermidine synthase; Provisional
Probab=99.31 E-value=1.3e-11 Score=109.08 Aligned_cols=110 Identities=11% Similarity=0.163 Sum_probs=86.4
Q ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-CCCCCchhhhee
Q 021344 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFVDAVHA 243 (314)
Q Consensus 165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-p~~~~~fD~V~~ 243 (314)
.++.+|||||||+|.++..+++..+..+++++|+++.+++.|++.+...+ ...+++++.+|+.+. ....++||+|++
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~--~~~rv~v~~~Da~~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPE--NGERFEVIEADGAEYIAVHRHSTDVILV 142 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCC--CCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence 35678999999999999999998888899999999999999999876532 236899999998542 222457999997
Q ss_pred cchhc--cCC---CHHHHHHHHHhhcccCcEEEEEeccc
Q 021344 244 GAALH--CWP---SPSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 244 ~~vl~--h~~---d~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
.. ++ ..+ ....+++++.++|+|||++++..+..
T Consensus 143 D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 143 DG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred eC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 53 22 111 12689999999999999999976544
No 113
>PTZ00146 fibrillarin; Provisional
Probab=99.31 E-value=5e-11 Score=105.38 Aligned_cols=106 Identities=18% Similarity=0.182 Sum_probs=79.0
Q ss_pred hccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC---CCCCCc
Q 021344 162 FKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL---PFASGF 237 (314)
Q Consensus 162 l~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l---p~~~~~ 237 (314)
+...++.+|||+|||+|.++..+++.. +...|+++|+++.+.+...+..+. ..|+.++.+|+... ....++
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-----r~NI~~I~~Da~~p~~y~~~~~~ 202 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-----RPNIVPIIEDARYPQKYRMLVPM 202 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----cCCCEEEECCccChhhhhcccCC
Confidence 456778899999999999999999883 345899999998765544443332 15789999998641 223457
Q ss_pred hhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 238 fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
||+|++... ...+...++.++.++|||||.|++..
T Consensus 203 vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~i 237 (293)
T PTZ00146 203 VDVIFADVA--QPDQARIVALNAQYFLKNGGHFIISI 237 (293)
T ss_pred CCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEEE
Confidence 999998764 22334466779999999999999943
No 114
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.31 E-value=1.4e-12 Score=109.00 Aligned_cols=120 Identities=21% Similarity=0.241 Sum_probs=92.3
Q ss_pred CCCCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEe
Q 021344 147 GFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226 (314)
Q Consensus 147 ~~~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~ 226 (314)
++..+....+++. ..+..+-.++||+|||||.....+...-. +++|+|+|++|++.|.++- .--.+.++
T Consensus 107 ~Y~vP~~l~emI~-~~~~g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eKg--------~YD~L~~A 175 (287)
T COG4976 107 GYSVPELLAEMIG-KADLGPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEKG--------LYDTLYVA 175 (287)
T ss_pred cCccHHHHHHHHH-hccCCccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhcc--------chHHHHHH
Confidence 3444555554444 34444467899999999999999998866 8999999999999998842 22234455
Q ss_pred cCCC-CC-CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344 227 DVCR-LP-FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 227 d~~~-lp-~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
++.. ++ ..++.||+|++..|+-++.+...++..+...|+|||.+.++.-..
T Consensus 176 ea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l 228 (287)
T COG4976 176 EAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETL 228 (287)
T ss_pred HHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEeccc
Confidence 5432 22 346789999999999999999999999999999999999977544
No 115
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=1.9e-11 Score=108.18 Aligned_cols=119 Identities=22% Similarity=0.351 Sum_probs=87.8
Q ss_pred CCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 021344 149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV 228 (314)
Q Consensus 149 ~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~ 228 (314)
+...-..+.+.++.. ++.+|||+|||+|-++...++.|. .+++|+|+++.+++.+++++..++. ...+.....+.
T Consensus 147 pTT~lcL~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v--~~~~~~~~~~~ 221 (300)
T COG2264 147 PTTSLCLEALEKLLK--KGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNGV--ELLVQAKGFLL 221 (300)
T ss_pred hhHHHHHHHHHHhhc--CCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcCC--chhhhcccccc
Confidence 333444566666655 588999999999999999999985 4799999999999999999998773 21122333333
Q ss_pred CCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 229 CRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 229 ~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
...+ ..++||+|+++= |-++ ...+..++.+.|||||+++++...
T Consensus 222 ~~~~-~~~~~DvIVANI-LA~v--l~~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 222 LEVP-ENGPFDVIVANI-LAEV--LVELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred hhhc-ccCcccEEEehh-hHHH--HHHHHHHHHHHcCCCceEEEEeeh
Confidence 3322 235899999864 2221 247889999999999999999854
No 116
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.30 E-value=2.3e-11 Score=107.91 Aligned_cols=119 Identities=18% Similarity=0.130 Sum_probs=92.1
Q ss_pred HHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCc
Q 021344 159 QEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF 237 (314)
Q Consensus 159 ~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~ 237 (314)
...+...++.+|||+|||+|..+..++.... ...|+++|+++.+++.++++++..+. .++.++..|...++...+.
T Consensus 64 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~---~~v~~~~~D~~~~~~~~~~ 140 (264)
T TIGR00446 64 PLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV---LNVAVTNFDGRVFGAAVPK 140 (264)
T ss_pred HHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC---CcEEEecCCHHHhhhhccC
Confidence 3456667889999999999999998887632 34899999999999999999988763 5799999998776554567
Q ss_pred hhhheec------chhccCCC---------------H-HHHHHHHHhhcccCcEEEEEecccCCC
Q 021344 238 VDAVHAG------AALHCWPS---------------P-SNAVAEISRILRSGGVFVGTTFLRYTS 280 (314)
Q Consensus 238 fD~V~~~------~vl~h~~d---------------~-~~~l~~i~r~LkpGG~l~i~~~~~~~~ 280 (314)
||+|++. .++.+-++ . ..+|+++.+.|||||+++.++.+-.+.
T Consensus 141 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~ 205 (264)
T TIGR00446 141 FDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPE 205 (264)
T ss_pred CCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChH
Confidence 9999863 22322221 1 258999999999999999988665443
No 117
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.30 E-value=3.8e-11 Score=111.03 Aligned_cols=115 Identities=14% Similarity=0.127 Sum_probs=85.4
Q ss_pred HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (314)
Q Consensus 154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~ 233 (314)
..+.+.+.+. ++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|+++++..+ .++.++++|+.+..+
T Consensus 241 LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g----~rV~fi~gDl~e~~l 314 (423)
T PRK14966 241 LVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG----ARVEFAHGSWFDTDM 314 (423)
T ss_pred HHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CcEEEEEcchhcccc
Confidence 3444444333 4569999999999999999987767799999999999999999988765 589999999865432
Q ss_pred -CCCchhhheecchh-------------cc--------CCC----HHHHHHHHHhhcccCcEEEEEe
Q 021344 234 -ASGFVDAVHAGAAL-------------HC--------WPS----PSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 234 -~~~~fD~V~~~~vl-------------~h--------~~d----~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
..++||+|+++--. .| -.| ...+++++.+.|+|||.+++..
T Consensus 315 ~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 315 PSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred ccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 24579999994211 00 001 1256777778999999988766
No 118
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.30 E-value=6.4e-12 Score=106.07 Aligned_cols=106 Identities=22% Similarity=0.285 Sum_probs=88.9
Q ss_pred eEEEEcCcccHHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC----CCCCCCchhhhe
Q 021344 169 LLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----LPFASGFVDAVH 242 (314)
Q Consensus 169 ~iLDiGcG~G~~~~~l~~~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~----lp~~~~~fD~V~ 242 (314)
+||+||||.|.....+.+..++ ..++++|.|+++++..+++..... .++.....|+.. .|...+++|+|+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e----~~~~afv~Dlt~~~~~~~~~~~svD~it 149 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE----SRVEAFVWDLTSPSLKEPPEEGSVDIIT 149 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch----hhhcccceeccchhccCCCCcCccceEE
Confidence 8999999999999999988776 789999999999999998765532 566666667643 346678999999
Q ss_pred ecchhccCCC--HHHHHHHHHhhcccCcEEEEEecccC
Q 021344 243 AGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRY 278 (314)
Q Consensus 243 ~~~vl~h~~d--~~~~l~~i~r~LkpGG~l~i~~~~~~ 278 (314)
+.+||.-++. .+.+++++.++|||||.+++.++.+.
T Consensus 150 ~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~ 187 (264)
T KOG2361|consen 150 LIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRY 187 (264)
T ss_pred EEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccc
Confidence 9999988753 35899999999999999999998764
No 119
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=5.2e-11 Score=104.83 Aligned_cols=120 Identities=17% Similarity=0.298 Sum_probs=98.6
Q ss_pred chHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344 151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (314)
Q Consensus 151 ~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~ 230 (314)
.+.-.+.+.+.++...+++|||+|||.|.++..+++..|..+++-+|++..+++.+++++..++. .+..++..|...
T Consensus 143 lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~---~~~~v~~s~~~~ 219 (300)
T COG2813 143 LDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGV---ENTEVWASNLYE 219 (300)
T ss_pred cChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCC---CccEEEEecccc
Confidence 34556788888888878899999999999999999999999999999999999999999998763 343666667654
Q ss_pred CCCCCCchhhheecchhccCCCH-----HHHHHHHHhhcccCcEEEEEec
Q 021344 231 LPFASGFVDAVHAGAALHCWPSP-----SNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 231 lp~~~~~fD~V~~~~vl~h~~d~-----~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
+..+ +||.|+++=-||-=.+. .+++.+..+.|++||.|.+...
T Consensus 220 -~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 220 -PVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred -cccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 3334 89999998666642222 3789999999999999999885
No 120
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.29 E-value=3.3e-11 Score=101.52 Aligned_cols=105 Identities=21% Similarity=0.259 Sum_probs=77.6
Q ss_pred HHHHHhccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---
Q 021344 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--- 232 (314)
Q Consensus 157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--- 232 (314)
...++....++.+|||+|||+|.++..+++.. ...+++++|+++.+ . ..++.++++|+.+.+
T Consensus 23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~---------~~~i~~~~~d~~~~~~~~ 88 (188)
T TIGR00438 23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----P---------IENVDFIRGDFTDEEVLN 88 (188)
T ss_pred HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----c---------CCCceEEEeeCCChhHHH
Confidence 33344445678899999999999999888775 34579999999854 1 146888999987643
Q ss_pred -----CCCCchhhheecchh--------ccCC---CHHHHHHHHHhhcccCcEEEEEec
Q 021344 233 -----FASGFVDAVHAGAAL--------HCWP---SPSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 233 -----~~~~~fD~V~~~~vl--------~h~~---d~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
++.++||+|++.... +|.. +...+++++.++|+|||++++..+
T Consensus 89 ~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 89 KIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred HHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 346689999985432 2211 135789999999999999999763
No 121
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.28 E-value=3.6e-11 Score=114.45 Aligned_cols=121 Identities=20% Similarity=0.233 Sum_probs=93.4
Q ss_pred HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (314)
Q Consensus 154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp 232 (314)
....+...+...++.+|||+|||+|..+..+++.. +..+++++|+++.+++.++++++..+. .++.++.+|+..++
T Consensus 238 ~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~---~~v~~~~~D~~~~~ 314 (444)
T PRK14902 238 SSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL---TNIETKALDARKVH 314 (444)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCCccccc
Confidence 33455566777778899999999999999998863 456999999999999999999988763 46999999997753
Q ss_pred --CCCCchhhheecc------hhccCCCH----------------HHHHHHHHhhcccCcEEEEEecccC
Q 021344 233 --FASGFVDAVHAGA------ALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLRY 278 (314)
Q Consensus 233 --~~~~~fD~V~~~~------vl~h~~d~----------------~~~l~~i~r~LkpGG~l~i~~~~~~ 278 (314)
+. ++||+|++.. ++.+-++. ..+|+++.++|||||.++.++.+-.
T Consensus 315 ~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 383 (444)
T PRK14902 315 EKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIE 383 (444)
T ss_pred chhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCC
Confidence 33 6899999742 22222211 2579999999999999998775543
No 122
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.28 E-value=6.3e-11 Score=103.00 Aligned_cols=118 Identities=21% Similarity=0.361 Sum_probs=94.8
Q ss_pred hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (314)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~ 230 (314)
...+.++...++..+|.+|||.|.|+|.++..+++. ++..+|+.+|+.++.++.|+++++..+ ...++++.+.|+.+
T Consensus 26 pkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g--l~~~v~~~~~Dv~~ 103 (247)
T PF08704_consen 26 PKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG--LDDNVTVHHRDVCE 103 (247)
T ss_dssp HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT--CCTTEEEEES-GGC
T ss_pred CchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC--CCCCceeEecceec
Confidence 445668888899999999999999999999999975 677799999999999999999999988 46789999999965
Q ss_pred CCCC---CCchhhheecchhccCCCHHHHHHHHHhhc-ccCcEEEEEecc
Q 021344 231 LPFA---SGFVDAVHAGAALHCWPSPSNAVAEISRIL-RSGGVFVGTTFL 276 (314)
Q Consensus 231 lp~~---~~~fD~V~~~~vl~h~~d~~~~l~~i~r~L-kpGG~l~i~~~~ 276 (314)
..|. +..+|.|+.. +++|..++..+.++| |+||++.+..++
T Consensus 104 ~g~~~~~~~~~DavfLD-----lp~Pw~~i~~~~~~L~~~gG~i~~fsP~ 148 (247)
T PF08704_consen 104 EGFDEELESDFDAVFLD-----LPDPWEAIPHAKRALKKPGGRICCFSPC 148 (247)
T ss_dssp G--STT-TTSEEEEEEE-----SSSGGGGHHHHHHHE-EEEEEEEEEESS
T ss_pred ccccccccCcccEEEEe-----CCCHHHHHHHHHHHHhcCCceEEEECCC
Confidence 4442 2568888865 689999999999999 899999988844
No 123
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.27 E-value=2.5e-11 Score=115.45 Aligned_cols=122 Identities=16% Similarity=0.162 Sum_probs=93.7
Q ss_pred HHHHHhccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC
Q 021344 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (314)
Q Consensus 157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~ 235 (314)
.....+...++.+|||+|||+|..+..+++.. ...+|+++|+++.+++.++++++..+. .+++++.+|+..++ ++
T Consensus 241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~---~~v~~~~~Da~~~~-~~ 316 (445)
T PRK14904 241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI---TIIETIEGDARSFS-PE 316 (445)
T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC---CeEEEEeCcccccc-cC
Confidence 44456666778899999999999988887753 234899999999999999999988763 57999999998765 45
Q ss_pred Cchhhheec------chhccCC------C----------HHHHHHHHHhhcccCcEEEEEecccCCCCC
Q 021344 236 GFVDAVHAG------AALHCWP------S----------PSNAVAEISRILRSGGVFVGTTFLRYTSST 282 (314)
Q Consensus 236 ~~fD~V~~~------~vl~h~~------d----------~~~~l~~i~r~LkpGG~l~i~~~~~~~~~~ 282 (314)
++||+|++. .++.+-+ + ...+|.++.+.|||||+++..|.+-.+..+
T Consensus 317 ~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~En 385 (445)
T PRK14904 317 EQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEEN 385 (445)
T ss_pred CCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhH
Confidence 689999962 2222111 1 135899999999999999999977654443
No 124
>PHA03411 putative methyltransferase; Provisional
Probab=99.27 E-value=9.1e-11 Score=102.68 Aligned_cols=117 Identities=13% Similarity=0.127 Sum_probs=88.5
Q ss_pred CCCCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEe
Q 021344 147 GFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226 (314)
Q Consensus 147 ~~~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~ 226 (314)
.|.++......+. +.....++|||+|||+|.++..++++....+++|+|+++.+++.+++++ .++.++++
T Consensus 47 ~FfTP~~i~~~f~--~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~--------~~v~~v~~ 116 (279)
T PHA03411 47 AFFTPEGLAWDFT--IDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL--------PEAEWITS 116 (279)
T ss_pred eEcCCHHHHHHHH--hccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC--------cCCEEEEC
Confidence 3556666654332 2233467999999999999988887654469999999999999998853 46889999
Q ss_pred cCCCCCCCCCchhhheecchhccCCC--------------------HHHHHHHHHhhcccCcEEEEEe
Q 021344 227 DVCRLPFASGFVDAVHAGAALHCWPS--------------------PSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 227 d~~~lp~~~~~fD~V~~~~vl~h~~d--------------------~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
|+..... +++||+|+++-.+.|... ...+++....+|+|+|.+.+..
T Consensus 117 D~~e~~~-~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y 183 (279)
T PHA03411 117 DVFEFES-NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY 183 (279)
T ss_pred chhhhcc-cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE
Confidence 9987653 468999999877777532 1356788889999999877763
No 125
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.26 E-value=6e-11 Score=101.84 Aligned_cols=138 Identities=18% Similarity=0.278 Sum_probs=93.0
Q ss_pred HhHHHhcccCCCCCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh--cC
Q 021344 137 RGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ--DN 214 (314)
Q Consensus 137 ~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~--~~ 214 (314)
..|++.-.......+........+.+...++.+||+.|||.|..+..|++.|. +|+|+|+|+.+++.+.+.... ..
T Consensus 8 ~~w~~~~~~w~~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~--~VvGvDls~~Ai~~~~~e~~~~~~~ 85 (218)
T PF05724_consen 8 ERWQEGQTPWDQGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH--DVVGVDLSPTAIEQAFEENNLEPTV 85 (218)
T ss_dssp HHHHTT--TT--TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE--EEEEEES-HHHHHHHHHHCTTEEEC
T ss_pred HHHhcCCCCCCCCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC--eEEEEecCHHHHHHHHHHhccCCCc
Confidence 34444433333333333333333335566778999999999999999999987 999999999999998443221 00
Q ss_pred -------CCCCCCeEEEEecCCCCCCCC-CchhhheecchhccCCC--HHHHHHHHHhhcccCcEEEEEecc
Q 021344 215 -------TILTSNLALVRADVCRLPFAS-GFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 215 -------~~~~~~v~~~~~d~~~lp~~~-~~fD~V~~~~vl~h~~d--~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
.....+|+++++|+..++... ++||+|+-...|.-++. -.+..+.+.++|||||.+++.+..
T Consensus 86 ~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~ 157 (218)
T PF05724_consen 86 TSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLE 157 (218)
T ss_dssp TTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEE
T ss_pred ccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 001347899999999876433 47999998888877753 358999999999999995444443
No 126
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.26 E-value=6.5e-11 Score=113.93 Aligned_cols=105 Identities=12% Similarity=0.137 Sum_probs=82.0
Q ss_pred CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc-
Q 021344 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA- 245 (314)
Q Consensus 167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~- 245 (314)
+.+|||+|||+|.++..++...+..+++++|+|+.+++.|+++++..+ ...++.++.+|+.. ++..++||+|+++-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~--l~~~v~~~~~D~~~-~~~~~~fDlIvsNPP 215 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYE--VTDRIQIIHSNWFE-NIEKQKFDFIVSNPP 215 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcC--Cccceeeeecchhh-hCcCCCccEEEECCC
Confidence 468999999999999999887767799999999999999999988765 23579999999754 23356899999841
Q ss_pred -------------hhccCCC------------HHHHHHHHHhhcccCcEEEEEe
Q 021344 246 -------------ALHCWPS------------PSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 246 -------------vl~h~~d------------~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
++.|-+. ...+++++.++|+|||.+++..
T Consensus 216 Yi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 216 YISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 2222111 1346778889999999998864
No 127
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.25 E-value=5e-11 Score=108.33 Aligned_cols=111 Identities=26% Similarity=0.322 Sum_probs=79.8
Q ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC-------CCCCCCeEEEEecCCCCC----CC
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-------TILTSNLALVRADVCRLP----FA 234 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------~~~~~~v~~~~~d~~~lp----~~ 234 (314)
++.+|||+|||-|.-+......+ -..++|+|++...++.|+++.+... ........++.+|..... +.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 67899999999988776666664 3489999999999999999983211 001245678888876421 22
Q ss_pred --CCchhhheecchhccCCCH----HHHHHHHHhhcccCcEEEEEeccc
Q 021344 235 --SGFVDAVHAGAALHCWPSP----SNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 235 --~~~fD~V~~~~vl~h~~d~----~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
..+||+|.|.+.|||.-.. ..+|+++.+.|||||+++.+++..
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 3589999999999986433 368999999999999999999654
No 128
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.24 E-value=1.9e-11 Score=109.00 Aligned_cols=111 Identities=23% Similarity=0.373 Sum_probs=82.1
Q ss_pred HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC
Q 021344 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (314)
Q Consensus 155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~ 234 (314)
.+.+.++. .++.+|||+|||+|-++...++.|. .+|+|+|+++.+++.|+++++.++. ..++.+. ...+. .
T Consensus 152 l~~l~~~~--~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~--~~~~~v~--~~~~~--~ 222 (295)
T PF06325_consen 152 LELLEKYV--KPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGV--EDRIEVS--LSEDL--V 222 (295)
T ss_dssp HHHHHHHS--STTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT---TTCEEES--CTSCT--C
T ss_pred HHHHHHhc--cCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCC--CeeEEEE--Eeccc--c
Confidence 44444443 3578999999999999999999985 5899999999999999999999883 4455442 22222 2
Q ss_pred CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
.++||+|+++-..+- ...+...+.++|+|||+++++....
T Consensus 223 ~~~~dlvvANI~~~v---L~~l~~~~~~~l~~~G~lIlSGIl~ 262 (295)
T PF06325_consen 223 EGKFDLVVANILADV---LLELAPDIASLLKPGGYLILSGILE 262 (295)
T ss_dssp CS-EEEEEEES-HHH---HHHHHHHCHHHEEEEEEEEEEEEEG
T ss_pred cccCCEEEECCCHHH---HHHHHHHHHHhhCCCCEEEEccccH
Confidence 478999998644221 2467888899999999999998654
No 129
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.24 E-value=1.1e-10 Score=96.57 Aligned_cols=109 Identities=9% Similarity=0.121 Sum_probs=83.4
Q ss_pred HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCC
Q 021344 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236 (314)
Q Consensus 157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~ 236 (314)
.+.+.+...++.+|||+|||+|.++..+++++. +++++|+++.+++.+++++.. ..+++++.+|+.++++++.
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~--~v~~vE~~~~~~~~~~~~~~~-----~~~v~ii~~D~~~~~~~~~ 76 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLERAA--RVTAIEIDPRLAPRLREKFAA-----ADNLTVIHGDALKFDLPKL 76 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhcCC--eEEEEECCHHHHHHHHHHhcc-----CCCEEEEECchhcCCcccc
Confidence 455666666788999999999999999999854 999999999999999988753 2589999999999887777
Q ss_pred chhhheecchhccCCCHHHHHHHHHhh--cccCcEEEEEec
Q 021344 237 FVDAVHAGAALHCWPSPSNAVAEISRI--LRSGGVFVGTTF 275 (314)
Q Consensus 237 ~fD~V~~~~vl~h~~d~~~~l~~i~r~--LkpGG~l~i~~~ 275 (314)
+||.|+++--. |+ ....+..+.+. +.++|.+++..-
T Consensus 77 ~~d~vi~n~Py-~~--~~~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 77 QPYKVVGNLPY-NI--STPILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred CCCEEEECCCc-cc--HHHHHHHHHhcCCCcceEEEEEEHH
Confidence 79999876443 33 23444444433 347788877553
No 130
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.22 E-value=9.4e-11 Score=102.00 Aligned_cols=120 Identities=13% Similarity=0.154 Sum_probs=92.4
Q ss_pred hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (314)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~ 230 (314)
....+++..+....++++|||+|||+|+.+..++.. ....+++++|+++.+++.|+++++..+ ...+++++.+|+.+
T Consensus 54 ~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g--l~~~i~~~~gda~~ 131 (234)
T PLN02781 54 VDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG--VDHKINFIQSDALS 131 (234)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEccHHH
Confidence 344455555556667889999999999988877765 345699999999999999999999987 35789999999865
Q ss_pred C-C-----CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 231 L-P-----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 231 l-p-----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
. + .+.++||+|+....- ++...++..+.++|+|||++++....
T Consensus 132 ~L~~l~~~~~~~~fD~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234)
T PLN02781 132 ALDQLLNNDPKPEFDFAFVDADK---PNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234)
T ss_pred HHHHHHhCCCCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 3 2 114689999985432 23357899999999999998875543
No 131
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.22 E-value=6.3e-11 Score=101.82 Aligned_cols=108 Identities=20% Similarity=0.333 Sum_probs=91.0
Q ss_pred HHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---CCC
Q 021344 159 QEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FAS 235 (314)
Q Consensus 159 ~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp---~~~ 235 (314)
.+.+.......+||||||.|.++..+++..|+..++|||+....+..|.+++.+.++ .|+.+++.|+..+- +++
T Consensus 41 ~~~f~~~~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l---~Nlri~~~DA~~~l~~~~~~ 117 (227)
T COG0220 41 SALFGNNNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL---KNLRLLCGDAVEVLDYLIPD 117 (227)
T ss_pred HHHhCCCCCcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC---CcEEEEcCCHHHHHHhcCCC
Confidence 344444434689999999999999999999999999999999999999999999873 39999999986531 345
Q ss_pred CchhhheecchhccCCCH-------------HHHHHHHHhhcccCcEEEEEe
Q 021344 236 GFVDAVHAGAALHCWPSP-------------SNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~-------------~~~l~~i~r~LkpGG~l~i~~ 274 (314)
++.|-|+..+ ||| ..+++.+.++|||||.|.+.|
T Consensus 118 ~sl~~I~i~F-----PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 118 GSLDKIYINF-----PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCeeEEEEEC-----CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 5899888764 566 378999999999999999998
No 132
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.22 E-value=3.6e-10 Score=99.41 Aligned_cols=102 Identities=23% Similarity=0.267 Sum_probs=77.9
Q ss_pred CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-CC-CCCchhhheec
Q 021344 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PF-ASGFVDAVHAG 244 (314)
Q Consensus 167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-p~-~~~~fD~V~~~ 244 (314)
+.+|||+|||+|.++..+++..+..+++++|+|+.+++.|+++++..+ ++++++|+.+. +. ..++||+|+++
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~------~~~~~~D~~~~l~~~~~~~fDlVv~N 160 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG------GTVHEGDLYDALPTALRGRVDILAAN 160 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC------CEEEEeechhhcchhcCCCEeEEEEC
Confidence 458999999999999999887666699999999999999999987643 47899998652 21 13579999985
Q ss_pred ch------hccCC----------------C----HHHHHHHHHhhcccCcEEEEEe
Q 021344 245 AA------LHCWP----------------S----PSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 245 ~v------l~h~~----------------d----~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
-- +..++ | ...+++.+.++|||||++++..
T Consensus 161 PPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 161 APYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred CCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 21 11111 1 1367778889999999999876
No 133
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.20 E-value=1.8e-10 Score=99.15 Aligned_cols=98 Identities=18% Similarity=0.215 Sum_probs=81.6
Q ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~ 245 (314)
...++||||+|.|..+..++..+. +|++.|.|+.|....++ .+++++..+ +..-.+.+||+|.|.+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~----------kg~~vl~~~--~w~~~~~~fDvIscLN 159 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSK----------KGFTVLDID--DWQQTDFKFDVISCLN 159 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHh----------CCCeEEehh--hhhccCCceEEEeehh
Confidence 456899999999999999999876 89999999999776665 345544333 2332356899999999
Q ss_pred hhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344 246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 246 vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
+|..-.+|..+|+++++.|+|+|++++....+
T Consensus 160 vLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP 191 (265)
T PF05219_consen 160 VLDRCDRPLTLLRDIRRALKPNGRLILAVVLP 191 (265)
T ss_pred hhhccCCHHHHHHHHHHHhCCCCEEEEEEEec
Confidence 99999999999999999999999999977654
No 134
>PRK01581 speE spermidine synthase; Validated
Probab=99.20 E-value=2.1e-10 Score=104.17 Aligned_cols=109 Identities=18% Similarity=0.219 Sum_probs=81.4
Q ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH--HHh--cCCCCCCCeEEEEecCCC-CCCCCCchh
Q 021344 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF--IKQ--DNTILTSNLALVRADVCR-LPFASGFVD 239 (314)
Q Consensus 165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~--~~~--~~~~~~~~v~~~~~d~~~-lp~~~~~fD 239 (314)
....+||+||||+|..++.+.+..+..+++++|+++.+++.|++. +.. .+.....+++++.+|+.+ +....++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 346799999999999999999876556999999999999999972 110 010024789999999865 333456899
Q ss_pred hheecchhccCCC------HHHHHHHHHhhcccCcEEEEEe
Q 021344 240 AVHAGAALHCWPS------PSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 240 ~V~~~~vl~h~~d------~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
+|++... ..... -..+++.+.+.|+|||++++..
T Consensus 229 VIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 229 VIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9998732 11100 1468999999999999998875
No 135
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.19 E-value=6.9e-11 Score=103.65 Aligned_cols=112 Identities=25% Similarity=0.368 Sum_probs=88.0
Q ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCC---CCCCeEEEEecCCC------CCCCC
Q 021344 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI---LTSNLALVRADVCR------LPFAS 235 (314)
Q Consensus 165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~---~~~~v~~~~~d~~~------lp~~~ 235 (314)
.++..++|+|||.|.-+...-+.+- ..++|+|+++..++.|+++.++.... ....+.|+.+|... +++.+
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 3577899999999988877777663 48999999999999999988875410 01247899999754 45556
Q ss_pred CchhhheecchhccCC----CHHHHHHHHHhhcccCcEEEEEeccc
Q 021344 236 GFVDAVHAGAALHCWP----SPSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 236 ~~fD~V~~~~vl~h~~----d~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
.+||+|.|.+++|+-- ....+|+++.+.|||||+++.+.+..
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 6799999999998742 33578999999999999999988553
No 136
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.18 E-value=7.1e-11 Score=98.38 Aligned_cols=124 Identities=19% Similarity=0.335 Sum_probs=80.2
Q ss_pred hhhHHHHHHhHHHhcccCCCCCchHHHHHHHHHhccCC-CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHH
Q 021344 129 PFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQ-GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCY 207 (314)
Q Consensus 129 ~~~s~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~ 207 (314)
+..-..|+.++++....+... -++.+.+++...+ +..|-|+|||.+.++..+... .+|...|+..
T Consensus 38 P~~F~~YH~Gfr~Qv~~WP~n----Pvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~---~~V~SfDLva------- 103 (219)
T PF05148_consen 38 PELFDIYHEGFRQQVKKWPVN----PVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK---HKVHSFDLVA------- 103 (219)
T ss_dssp HHHHHHHHHHHHHHHCTSSS-----HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS--------
T ss_pred HHHHHHHHHHHHHHHhcCCCC----cHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccC---ceEEEeeccC-------
Confidence 334457888988887765433 3344445554433 468999999999999776533 2799999954
Q ss_pred HHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344 208 DFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (314)
Q Consensus 208 ~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~ 278 (314)
.+-.++.+|+..+|+++++.|++++...|.- .|...++.|..|+|||||.|.|.+....
T Consensus 104 -----------~n~~Vtacdia~vPL~~~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~SR 162 (219)
T PF05148_consen 104 -----------PNPRVTACDIANVPLEDESVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKSR 162 (219)
T ss_dssp -----------SSTTEEES-TTS-S--TT-EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGGG
T ss_pred -----------CCCCEEEecCccCcCCCCceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEeccc
Confidence 3445788999999999999999998776654 4788999999999999999999997653
No 137
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.18 E-value=4.8e-10 Score=99.77 Aligned_cols=109 Identities=15% Similarity=0.191 Sum_probs=81.8
Q ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCC-CCCCCeEEEEecCCC-CCCCCCchhhhee
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCR-LPFASGFVDAVHA 243 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-~~~~~v~~~~~d~~~-lp~~~~~fD~V~~ 243 (314)
.+.+||+||||+|.++..+.+.....+++++|+++.+++.+++.+..... ....+++++.+|... +....++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 45699999999999999998876556899999999999999998754320 023578888888744 2222468999998
Q ss_pred cchhccCCC----HHHHHHHHHhhcccCcEEEEEe
Q 021344 244 GAALHCWPS----PSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 244 ~~vl~h~~d----~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
......-+. ...+++.+.+.|+|||++++..
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 654221111 3578899999999999999874
No 138
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.17 E-value=1.9e-10 Score=97.91 Aligned_cols=123 Identities=19% Similarity=0.275 Sum_probs=92.8
Q ss_pred hhhHHHHHHhHHHhcccCCCCCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 021344 129 PFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD 208 (314)
Q Consensus 129 ~~~s~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~ 208 (314)
+..-..|+.+++.....+.....+..++.+... .....|-|+|||.+.++. ... ..|+.+|+..
T Consensus 146 p~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r---~~~~vIaD~GCGEakiA~---~~~--~kV~SfDL~a-------- 209 (325)
T KOG3045|consen 146 PTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRR---PKNIVIADFGCGEAKIAS---SER--HKVHSFDLVA-------- 209 (325)
T ss_pred cHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhC---cCceEEEecccchhhhhh---ccc--cceeeeeeec--------
Confidence 344457888888877665544444444444432 345679999999998775 222 3899999843
Q ss_pred HHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344 209 FIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (314)
Q Consensus 209 ~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~ 278 (314)
.+-+++.+|+.++|+++++.|++++...|.- .|...++.++.|+||+||.++|.+....
T Consensus 210 ----------~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~SR 268 (325)
T KOG3045|consen 210 ----------VNERVIACDMRNVPLEDESVDVAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVKSR 268 (325)
T ss_pred ----------CCCceeeccccCCcCccCcccEEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehhhh
Confidence 5667889999999999999999988766543 5888999999999999999999997653
No 139
>PLN02366 spermidine synthase
Probab=99.15 E-value=8.6e-10 Score=99.40 Aligned_cols=110 Identities=16% Similarity=0.208 Sum_probs=83.1
Q ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCC-CCCCCeEEEEecCCCC-C-CCCCchhhh
Q 021344 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCRL-P-FASGFVDAV 241 (314)
Q Consensus 165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-~~~~~v~~~~~d~~~l-p-~~~~~fD~V 241 (314)
.++++||+||||.|..++.+++.....+++.+|+++.+++.+++.+...+. ....+++++.+|+... . .++++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 357899999999999999999875446899999999999999998765221 0246899999997432 1 225689999
Q ss_pred eecchhccCCC----HHHHHHHHHhhcccCcEEEEEe
Q 021344 242 HAGAALHCWPS----PSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 242 ~~~~vl~h~~d----~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
++...-.+.+. ...+++.+.++|+|||++++..
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 98543222221 1368999999999999997754
No 140
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=4.6e-10 Score=100.04 Aligned_cols=101 Identities=24% Similarity=0.389 Sum_probs=80.8
Q ss_pred eEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc--h
Q 021344 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA--A 246 (314)
Q Consensus 169 ~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~--v 246 (314)
+|||+|||+|..+..++...++.+|+|+|+|+.+++.|+++++..+. .++.++.+|+.. +. .++||+|+++= +
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l---~~~~~~~~dlf~-~~-~~~fDlIVsNPPYi 187 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL---VRVLVVQSDLFE-PL-RGKFDLIVSNPPYI 187 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC---ccEEEEeeeccc-cc-CCceeEEEeCCCCC
Confidence 79999999999999999999888999999999999999999999873 667777777654 22 23899999851 1
Q ss_pred ---hccC------CCH--------------HHHHHHHHhhcccCcEEEEEe
Q 021344 247 ---LHCW------PSP--------------SNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 247 ---l~h~------~d~--------------~~~l~~i~r~LkpGG~l~i~~ 274 (314)
..+. .+| ..++.++.+.|+|||.+++..
T Consensus 188 p~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 188 PAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred CCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence 1111 122 367888999999999999877
No 141
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.13 E-value=4.6e-10 Score=95.41 Aligned_cols=122 Identities=13% Similarity=0.143 Sum_probs=97.0
Q ss_pred hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEE-ecCC
Q 021344 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-ADVC 229 (314)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~-~d~~ 229 (314)
.+...++...+.....++|||||.+.|+.+..++...+ +.+++.+|++++..+.|++++++.+ ...++..+. +|..
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag--~~~~i~~~~~gdal 122 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG--VDDRIELLLGGDAL 122 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC--CcceEEEEecCcHH
Confidence 34455666666666788999999999999999999876 7899999999999999999999998 456688888 4764
Q ss_pred CC-C-CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344 230 RL-P-FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (314)
Q Consensus 230 ~l-p-~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~ 278 (314)
+. . ...++||+||....-. +-..++..+.++|+|||++++-.....
T Consensus 123 ~~l~~~~~~~fDliFIDadK~---~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 123 DVLSRLLDGSFDLVFIDADKA---DYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred HHHHhccCCCccEEEEeCChh---hCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 32 2 3468999999765422 235789999999999999998766654
No 142
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.09 E-value=1.1e-09 Score=104.11 Aligned_cols=114 Identities=18% Similarity=0.327 Sum_probs=87.0
Q ss_pred hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-
Q 021344 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR- 230 (314)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~- 230 (314)
+...+.+.+.+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++++..+. .+++++.+|+.+
T Consensus 283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~--~V~gvD~s~~al~~A~~n~~~~~~---~~v~~~~~d~~~~ 357 (443)
T PRK13168 283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAA--EVVGVEGVEAMVERARENARRNGL---DNVTFYHANLEED 357 (443)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHHcCC---CceEEEEeChHHh
Confidence 34455666667666788999999999999999998874 999999999999999999887763 579999999864
Q ss_pred ---CCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 231 ---LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 231 ---lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
.++.+++||+|++.---. .....++.+.+ ++|+++++++.
T Consensus 358 l~~~~~~~~~fD~Vi~dPPr~---g~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 358 FTDQPWALGGFDKVLLDPPRA---GAAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred hhhhhhhcCCCCEEEECcCCc---ChHHHHHHHHh-cCCCeEEEEEe
Confidence 234456899998742111 12345555555 68999988876
No 143
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.08 E-value=1.9e-09 Score=91.25 Aligned_cols=123 Identities=11% Similarity=0.095 Sum_probs=86.9
Q ss_pred CchHHHHHHHHHhcc-CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 021344 150 GPDEEFKMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV 228 (314)
Q Consensus 150 ~~~~~~~~l~~~l~~-~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~ 228 (314)
..+...+.+.+.+.. .++.+|||+|||+|.++..++.++. .+|+++|.++.+++.++++++..+. .++.++.+|+
T Consensus 36 ~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~---~~v~~~~~D~ 111 (199)
T PRK10909 36 TTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKA---GNARVVNTNA 111 (199)
T ss_pred CCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCC---CcEEEEEchH
Confidence 334444555555532 4577999999999999987665553 5999999999999999999988763 4799999998
Q ss_pred CC-CCCCCCchhhheecchhccCCCHHHHHHHHHh--hcccCcEEEEEeccc
Q 021344 229 CR-LPFASGFVDAVHAGAALHCWPSPSNAVAEISR--ILRSGGVFVGTTFLR 277 (314)
Q Consensus 229 ~~-lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r--~LkpGG~l~i~~~~~ 277 (314)
.+ ++...++||+|++.=-... .-...+++.+.. .|+|+|++++.....
T Consensus 112 ~~~l~~~~~~fDlV~~DPPy~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 112 LSFLAQPGTPHNVVFVDPPFRK-GLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred HHHHhhcCCCceEEEECCCCCC-ChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 65 2222456999998643211 112345555554 378999999887543
No 144
>PHA03412 putative methyltransferase; Provisional
Probab=99.07 E-value=1.3e-09 Score=93.43 Aligned_cols=113 Identities=15% Similarity=0.191 Sum_probs=81.8
Q ss_pred CCCCCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeE
Q 021344 146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG---TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA 222 (314)
Q Consensus 146 ~~~~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~---~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~ 222 (314)
..|.++..+...+... ...+.+|||+|||+|.++..+++.. ...+++++|+++.+++.|+++. .++.
T Consensus 31 GqFfTP~~iAr~~~i~--~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~--------~~~~ 100 (241)
T PHA03412 31 GAFFTPIGLARDFTID--ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV--------PEAT 100 (241)
T ss_pred CccCCCHHHHHHHHHh--ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc--------cCCE
Confidence 4466777766555422 2246799999999999999888752 2458999999999999999753 4588
Q ss_pred EEEecCCCCCCCCCchhhheecchhc-----cC-------CCHHHHHHHHHhhcccCcE
Q 021344 223 LVRADVCRLPFASGFVDAVHAGAALH-----CW-------PSPSNAVAEISRILRSGGV 269 (314)
Q Consensus 223 ~~~~d~~~lp~~~~~fD~V~~~~vl~-----h~-------~d~~~~l~~i~r~LkpGG~ 269 (314)
++.+|+...++ +++||+|+++=-+. +. .-...+++.+.+++++|+.
T Consensus 101 ~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 101 WINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred EEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 99999977654 56899999953222 11 0134688888886666665
No 145
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.06 E-value=9.6e-10 Score=102.53 Aligned_cols=110 Identities=17% Similarity=0.198 Sum_probs=81.8
Q ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--C--CCCchhhh
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--F--ASGFVDAV 241 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--~--~~~~fD~V 241 (314)
++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.|+++++.++. ...+++++.+|+.+.- + ..++||+|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~g-a~~V~~VD~s~~al~~a~~N~~~Ngl-~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKL-DLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC-CCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 47899999999999988776654 45899999999999999999998763 1147999999986531 1 24589999
Q ss_pred eecchhc---------cCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344 242 HAGAALH---------CWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 242 ~~~~vl~---------h~~d~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
++.--.. ...+-..++....++|+|||.++..+.+.
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~ 342 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSG 342 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 9862210 00122345566789999999999877543
No 146
>PLN02476 O-methyltransferase
Probab=99.06 E-value=1.9e-09 Score=95.28 Aligned_cols=121 Identities=14% Similarity=0.120 Sum_probs=93.5
Q ss_pred hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (314)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~ 230 (314)
....+++..++...+.++|||||+++|+.+..++... .+.+++.+|.++...+.|+++++..+ ...+++++.+|+.+
T Consensus 104 ~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG--l~~~I~li~GdA~e 181 (278)
T PLN02476 104 PDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG--VSHKVNVKHGLAAE 181 (278)
T ss_pred HHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHH
Confidence 3344455555556668899999999999999998753 35589999999999999999999988 45789999999855
Q ss_pred -CC-C----CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344 231 -LP-F----ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 231 -lp-~----~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
++ + ..++||+|+...-- .+...+++.+.++|+|||.+++-....
T Consensus 182 ~L~~l~~~~~~~~FD~VFIDa~K---~~Y~~y~e~~l~lL~~GGvIV~DNvL~ 231 (278)
T PLN02476 182 SLKSMIQNGEGSSYDFAFVDADK---RMYQDYFELLLQLVRVGGVIVMDNVLW 231 (278)
T ss_pred HHHHHHhcccCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCcEEEEecCcc
Confidence 22 1 13589999986532 233577889999999999998865544
No 147
>PRK03612 spermidine synthase; Provisional
Probab=99.05 E-value=1.3e-09 Score=105.44 Aligned_cols=110 Identities=16% Similarity=0.151 Sum_probs=82.3
Q ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH--HHhcC--CCCCCCeEEEEecCCCC-CCCCCchh
Q 021344 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF--IKQDN--TILTSNLALVRADVCRL-PFASGFVD 239 (314)
Q Consensus 165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~--~~~~~--~~~~~~v~~~~~d~~~l-p~~~~~fD 239 (314)
+++++|||||||+|..++.+.++....+++++|+++++++.++++ +.... ....++++++.+|..+. ...+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 356799999999999999999864336999999999999999983 22210 00236899999998652 22356899
Q ss_pred hheecchhccCCCH-----HHHHHHHHhhcccCcEEEEEe
Q 021344 240 AVHAGAALHCWPSP-----SNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 240 ~V~~~~vl~h~~d~-----~~~l~~i~r~LkpGG~l~i~~ 274 (314)
+|++...-...+.+ ..+++.+.+.|||||++++..
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 99997543222221 358999999999999999876
No 148
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.05 E-value=4.7e-09 Score=87.97 Aligned_cols=121 Identities=19% Similarity=0.276 Sum_probs=92.7
Q ss_pred HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCC-eEEEEecCCCCC
Q 021344 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSN-LALVRADVCRLP 232 (314)
Q Consensus 154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~-v~~~~~d~~~lp 232 (314)
+.+.+.++++.. +.+|||||||+|..+.+++...+.....-.|+++......+..+...+. .| ..-+..|+...+
T Consensus 14 Il~vL~~~l~~~-~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~---~Nv~~P~~lDv~~~~ 89 (204)
T PF06080_consen 14 ILEVLKQYLPDS-GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGL---PNVRPPLALDVSAPP 89 (204)
T ss_pred HHHHHHHHhCcc-CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCC---cccCCCeEeecCCCC
Confidence 455666776652 3269999999999999999999988889999999988777777776653 22 233455665542
Q ss_pred --C------CCCchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEecccC
Q 021344 233 --F------ASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRY 278 (314)
Q Consensus 233 --~------~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~~~ 278 (314)
. ..++||.|++.+++|-.+-. ..+++.+.++|++||.|++..+...
T Consensus 90 w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~ 145 (204)
T PF06080_consen 90 WPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNR 145 (204)
T ss_pred CccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCccc
Confidence 2 24589999999998876533 5799999999999999999887664
No 149
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.04 E-value=8.3e-10 Score=93.77 Aligned_cols=117 Identities=14% Similarity=0.215 Sum_probs=90.7
Q ss_pred HHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-C-
Q 021344 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P- 232 (314)
Q Consensus 156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-p- 232 (314)
+++..+....+.++|||||+++|+.+..+++..+ +.+++.+|+++...+.|++.++..+ ...+++++.+|+.+. +
T Consensus 35 ~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag--~~~~I~~~~gda~~~l~~ 112 (205)
T PF01596_consen 35 QLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG--LDDRIEVIEGDALEVLPE 112 (205)
T ss_dssp HHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT--GGGGEEEEES-HHHHHHH
T ss_pred HHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC--CCCcEEEEEeccHhhHHH
Confidence 3444444455678999999999999999998743 5799999999999999999999987 457899999998542 2
Q ss_pred ----CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344 233 ----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 233 ----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
...++||+|+....-. +-...+..+.++|+|||.+++-....
T Consensus 113 l~~~~~~~~fD~VFiDa~K~---~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 113 LANDGEEGQFDFVFIDADKR---NYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp HHHTTTTTSEEEEEEESTGG---GHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred HHhccCCCceeEEEEccccc---chhhHHHHHhhhccCCeEEEEccccc
Confidence 1135799999876433 34577888999999999999876554
No 150
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.04 E-value=4.2e-10 Score=94.70 Aligned_cols=109 Identities=15% Similarity=0.161 Sum_probs=80.8
Q ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~ 245 (314)
...+.||.|+|.|+.+..+.... ..+|-.+|+.+..++.|++.+.... ....++++..+++.....++||+|++-+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~---~~v~~~~~~gLQ~f~P~~~~YDlIW~QW 130 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDN---PRVGEFYCVGLQDFTPEEGKYDLIWIQW 130 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGG---CCEEEEEES-GGG----TT-EEEEEEES
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccC---CCcceEEecCHhhccCCCCcEeEEEehH
Confidence 45689999999999999886654 3499999999999999998766522 2446777777776654567999999999
Q ss_pred hhccCCCHH--HHHHHHHhhcccCcEEEEEecccC
Q 021344 246 ALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRY 278 (314)
Q Consensus 246 vl~h~~d~~--~~l~~i~r~LkpGG~l~i~~~~~~ 278 (314)
++.|+.|.+ .+|+.+...|+|||++++-+....
T Consensus 131 ~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~ 165 (218)
T PF05891_consen 131 CLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSS 165 (218)
T ss_dssp -GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred hhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCC
Confidence 999999765 899999999999999999776553
No 151
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.04 E-value=9.4e-10 Score=110.10 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=84.6
Q ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-CCCCchhhheec
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHAG 244 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-~~~~~fD~V~~~ 244 (314)
++.+|||+|||+|.++..+++.+. .+|+++|+|+.+++.|+++++.++. ...+++++++|+.+.. -..++||+|++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga-~~V~~vD~s~~al~~a~~N~~~ng~-~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGA-KSTTTVDMSNTYLEWAERNFALNGL-SGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCC-CccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 478999999999999999998763 4799999999999999999998773 1147999999985521 114689999984
Q ss_pred c-----------hhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 245 A-----------ALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 245 ~-----------vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
- +.....+...++..+.++|+|||.+++.+..
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 1 1112223456788889999999999887744
No 152
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.03 E-value=1.8e-09 Score=98.32 Aligned_cols=113 Identities=12% Similarity=0.184 Sum_probs=82.1
Q ss_pred HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (314)
Q Consensus 154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~ 233 (314)
.++.+.+++...++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|+++++..+. .+++++++|+.++..
T Consensus 161 l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~--~V~gvD~s~~av~~A~~n~~~~~l---~~v~~~~~D~~~~~~ 235 (315)
T PRK03522 161 LYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGM--QLTGIEISAEAIACAKQSAAELGL---TNVQFQALDSTQFAT 235 (315)
T ss_pred HHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHcCC---CceEEEEcCHHHHHH
Confidence 344455555544578999999999999999999764 999999999999999999988763 579999999976532
Q ss_pred -CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 234 -ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 234 -~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
..++||+|++.---. .....+.++...++|+++++++.
T Consensus 236 ~~~~~~D~Vv~dPPr~---G~~~~~~~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 236 AQGEVPDLVLVNPPRR---GIGKELCDYLSQMAPRFILYSSC 274 (315)
T ss_pred hcCCCCeEEEECCCCC---CccHHHHHHHHHcCCCeEEEEEC
Confidence 235799999752200 01122333334467888888766
No 153
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.02 E-value=2e-09 Score=96.67 Aligned_cols=119 Identities=20% Similarity=0.274 Sum_probs=97.1
Q ss_pred hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEe-cCCC
Q 021344 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCR 230 (314)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~-d~~~ 230 (314)
-+....+.++....+|..|||-=||||.++..+.-.|. +++|.|++..|++-|+.+++..++ ....+... |+..
T Consensus 183 P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~--~viG~Did~~mv~gak~Nl~~y~i---~~~~~~~~~Da~~ 257 (347)
T COG1041 183 PRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA--RVIGSDIDERMVRGAKINLEYYGI---EDYPVLKVLDATN 257 (347)
T ss_pred HHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc--eEeecchHHHHHhhhhhhhhhhCc---CceeEEEeccccc
Confidence 34566777777888899999999999999999998887 999999999999999999998763 56656666 9999
Q ss_pred CCCCCCchhhheecchh-----ccCCC----HHHHHHHHHhhcccCcEEEEEec
Q 021344 231 LPFASGFVDAVHAGAAL-----HCWPS----PSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 231 lp~~~~~fD~V~~~~vl-----~h~~d----~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
+|+++.+||.|++.--. -.... ...+|+.+.++||+||++++..+
T Consensus 258 lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 258 LPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 99998889999973110 00111 24789999999999999999885
No 154
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.01 E-value=2.7e-10 Score=106.05 Aligned_cols=116 Identities=25% Similarity=0.359 Sum_probs=82.6
Q ss_pred CchHHHHHHHHHhcc--C--CCCeEEEEcCcccHHHHHHHHhCCCCeEEEE---eCCHHHHHHHHHHHHhcCCCCCCCeE
Q 021344 150 GPDEEFKMAQEYFKS--A--QGGLLVDVSCGSGLFSRKFAKSGTYSGVVAL---DFSENMLRQCYDFIKQDNTILTSNLA 222 (314)
Q Consensus 150 ~~~~~~~~l~~~l~~--~--~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gi---D~s~~~~~~a~~~~~~~~~~~~~~v~ 222 (314)
+....++.+.+.++. . .-.++||+|||+|.|+.+|.+++- .+..+ |..+..++.|.+ ..+.
T Consensus 97 Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V--~t~s~a~~d~~~~qvqfale----------RGvp 164 (506)
T PF03141_consen 97 GADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV--TTMSFAPNDEHEAQVQFALE----------RGVP 164 (506)
T ss_pred CHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc--eEEEcccccCCchhhhhhhh----------cCcc
Confidence 345566777777765 2 234689999999999999999853 22222 444456666655 2344
Q ss_pred EEEec--CCCCCCCCCchhhheecchhccC-CCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344 223 LVRAD--VCRLPFASGFVDAVHAGAALHCW-PSPSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 223 ~~~~d--~~~lp~~~~~fD~V~~~~vl~h~-~d~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
.+.+- ...+||++++||+|.|...+-.+ .+...+|-++.|+|+|||+++++.+-.
T Consensus 165 a~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 165 AMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred hhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcc
Confidence 44333 36799999999999998886544 344578999999999999999988543
No 155
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.01 E-value=2.1e-09 Score=89.15 Aligned_cols=114 Identities=19% Similarity=0.167 Sum_probs=76.8
Q ss_pred ccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----CCCCch
Q 021344 163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFV 238 (314)
Q Consensus 163 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp----~~~~~f 238 (314)
...++.+|||+|||+|..+..++......+|+..|..+ .++..+.+++.++.....++.+...|..+.. ....+|
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred hhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 34568899999999999999999884456999999999 9999999888754112356777777764411 234589
Q ss_pred hhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344 239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 239 D~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
|+|++..++..-.....+++.+.++|+++|.+++....+
T Consensus 121 D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 121 DVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp SEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred CEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 999999999987777899999999999999877777554
No 156
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.98 E-value=4.1e-09 Score=93.82 Aligned_cols=127 Identities=13% Similarity=0.181 Sum_probs=88.1
Q ss_pred CCCchHHHHHHHHHhcc-CCCCeEEEEcCcccH----HHHHHHHhC----CCCeEEEEeCCHHHHHHHHHHHHh------
Q 021344 148 FPGPDEEFKMAQEYFKS-AQGGLLVDVSCGSGL----FSRKFAKSG----TYSGVVALDFSENMLRQCYDFIKQ------ 212 (314)
Q Consensus 148 ~~~~~~~~~~l~~~l~~-~~~~~iLDiGcG~G~----~~~~l~~~~----~~~~v~giD~s~~~~~~a~~~~~~------ 212 (314)
|......++.+.+.+.. ...-+|+..||++|. ++..+.+.. ...+|+|+|+|+.+++.|++-.-.
T Consensus 96 FFRd~~~f~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~ 175 (287)
T PRK10611 96 FFREAHHFPILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKT 175 (287)
T ss_pred ccCCcHHHHHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhc
Confidence 33344445555544322 223689999999996 333333322 145899999999999999874211
Q ss_pred ------------c-----C-----CCCCCCeEEEEecCCCCCCC-CCchhhheecchhccCCCH--HHHHHHHHhhcccC
Q 021344 213 ------------D-----N-----TILTSNLALVRADVCRLPFA-SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSG 267 (314)
Q Consensus 213 ------------~-----~-----~~~~~~v~~~~~d~~~lp~~-~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpG 267 (314)
. + ......|.|.+.|+.+.+++ .+.||+|+|.+|+.|+.+. .++++.+.+.|+||
T Consensus 176 ~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pg 255 (287)
T PRK10611 176 LSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPD 255 (287)
T ss_pred CCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCC
Confidence 0 0 00125688999998775543 5789999999999999654 58999999999999
Q ss_pred cEEEEEe
Q 021344 268 GVFVGTT 274 (314)
Q Consensus 268 G~l~i~~ 274 (314)
|+|++-.
T Consensus 256 G~L~lG~ 262 (287)
T PRK10611 256 GLLFAGH 262 (287)
T ss_pred cEEEEeC
Confidence 9987755
No 157
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.97 E-value=3.1e-09 Score=100.90 Aligned_cols=113 Identities=17% Similarity=0.264 Sum_probs=85.1
Q ss_pred HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC--
Q 021344 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-- 231 (314)
Q Consensus 154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-- 231 (314)
..+.+.+.+...++.+|||+|||+|.++..+++... +|+|+|+++.+++.|+++++..+. .+++++.+|+.+.
T Consensus 280 l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~--~V~~vE~~~~av~~a~~n~~~~~~---~nv~~~~~d~~~~l~ 354 (431)
T TIGR00479 280 LVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAK--SVVGIEVVPESVEKAQQNAELNGI---ANVEFLAGTLETVLP 354 (431)
T ss_pred HHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCC--EEEEEEcCHHHHHHHHHHHHHhCC---CceEEEeCCHHHHHH
Confidence 445566666666678999999999999999998765 899999999999999999988763 6899999998652
Q ss_pred --CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 232 --PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 232 --p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
++.+++||+|++.-.= ..-...+++.+.+ ++|+++++++.
T Consensus 355 ~~~~~~~~~D~vi~dPPr--~G~~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 355 KQPWAGQIPDVLLLDPPR--KGCAAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred HHHhcCCCCCEEEECcCC--CCCCHHHHHHHHh-cCCCEEEEEcC
Confidence 2334679999874220 0112455666554 88999887764
No 158
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.95 E-value=7.3e-09 Score=89.20 Aligned_cols=125 Identities=15% Similarity=0.204 Sum_probs=92.2
Q ss_pred chHHHHHHHHHhccC---CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEec
Q 021344 151 PDEEFKMAQEYFKSA---QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD 227 (314)
Q Consensus 151 ~~~~~~~l~~~l~~~---~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d 227 (314)
.++.++++.+.+... .+..|||+|||+|..+..++...+.+.++++|.|+.++..|.++.+..+ ...++..+.-+
T Consensus 130 TEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~--l~g~i~v~~~~ 207 (328)
T KOG2904|consen 130 TEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK--LSGRIEVIHNI 207 (328)
T ss_pred HHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh--hcCceEEEecc
Confidence 355566776666543 3447999999999999999998888999999999999999999999877 45777777554
Q ss_pred CCC-----CCCCCCchhhheecch--h----cc--------------------CCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 228 VCR-----LPFASGFVDAVHAGAA--L----HC--------------------WPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 228 ~~~-----lp~~~~~fD~V~~~~v--l----~h--------------------~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
.+. .+...++.|+++++-- . .. ......++.-+.|.|+|||.+.+....
T Consensus 208 me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~ 287 (328)
T KOG2904|consen 208 MESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVE 287 (328)
T ss_pred cccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecc
Confidence 432 3455688999988521 1 10 011124677788999999999998854
Q ss_pred c
Q 021344 277 R 277 (314)
Q Consensus 277 ~ 277 (314)
.
T Consensus 288 ~ 288 (328)
T KOG2904|consen 288 R 288 (328)
T ss_pred c
Confidence 4
No 159
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.95 E-value=3e-09 Score=102.50 Aligned_cols=101 Identities=14% Similarity=0.212 Sum_probs=86.2
Q ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC--CCCCCchhhhee
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVHA 243 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l--p~~~~~fD~V~~ 243 (314)
.+..+||||||.|.++..++...|+..++|+|+....+..+.++....++ .|+.++..|+..+ -++++++|.|+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l---~N~~~~~~~~~~~~~~~~~~sv~~i~i 423 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI---TNFLLFPNNLDLILNDLPNNSLDGIYI 423 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC---CeEEEEcCCHHHHHHhcCcccccEEEE
Confidence 46689999999999999999999999999999999999999888877763 7888888886432 256788998887
Q ss_pred cchhccCCCH-------------HHHHHHHHhhcccCcEEEEEe
Q 021344 244 GAALHCWPSP-------------SNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 244 ~~vl~h~~d~-------------~~~l~~i~r~LkpGG~l~i~~ 274 (314)
.+ ||| ..+++.+.++|||||.+.+.|
T Consensus 424 ~F-----PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 424 LF-----PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred EC-----CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 54 565 378999999999999999988
No 160
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.94 E-value=3.5e-09 Score=89.56 Aligned_cols=109 Identities=16% Similarity=0.217 Sum_probs=75.9
Q ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCC---C-------------------------
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI---L------------------------- 217 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~---~------------------------- 217 (314)
.+..+|||||..|.++..+++.+....++|+||++..++.|++.++..... .
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 467899999999999999999977778999999999999999977652200 0
Q ss_pred ----CCCeEEEEecCC-----CCCCCCCchhhheecchhccC----CC--HHHHHHHHHhhcccCcEEEEEe
Q 021344 218 ----TSNLALVRADVC-----RLPFASGFVDAVHAGAALHCW----PS--PSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 218 ----~~~v~~~~~d~~-----~lp~~~~~fD~V~~~~vl~h~----~d--~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
..++.+...+.. -+.+....||+|+|..+--++ .| ...+++.+.++|.|||+|++.-
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 001111111100 011234579999986553322 12 3589999999999999998854
No 161
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.94 E-value=1.6e-08 Score=80.88 Aligned_cols=125 Identities=16% Similarity=0.295 Sum_probs=104.0
Q ss_pred cCCCCCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEE
Q 021344 145 RSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLAL 223 (314)
Q Consensus 145 ~~~~~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~ 223 (314)
.+-.+...-..+.|...++...+.-|||+|.|+|-++.++.+++ ....++++|.|++......+. .+.+++
T Consensus 27 GaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~--------~p~~~i 98 (194)
T COG3963 27 GAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL--------YPGVNI 98 (194)
T ss_pred eeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh--------CCCccc
Confidence 33456777788888888898889999999999999999999986 356899999999999988884 467779
Q ss_pred EEecCCCCC-----CCCCchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEeccc
Q 021344 224 VRADVCRLP-----FASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 224 ~~~d~~~lp-----~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
+.+|+.++. ..+..||.|++.--+-.++-. .+.|+++...|.+||.++..+++.
T Consensus 99 i~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 99 INGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred cccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 999987764 456689999998777766543 478999999999999999999874
No 162
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.93 E-value=1.3e-08 Score=90.23 Aligned_cols=105 Identities=11% Similarity=0.172 Sum_probs=84.7
Q ss_pred CeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCC-CCCeEEEEecCCCC-CCCCCchhhheecc
Q 021344 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL-TSNLALVRADVCRL-PFASGFVDAVHAGA 245 (314)
Q Consensus 168 ~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~-~~~v~~~~~d~~~l-p~~~~~fD~V~~~~ 245 (314)
++||-||.|.|..++.+.+..+..+++.+|+++..++.+++.+....... ..+++++..|..+. .-..++||+|++..
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 69999999999999999999877899999999999999999887754212 37899999998653 21233799999854
Q ss_pred hhccCCCH------HHHHHHHHhhcccCcEEEEEe
Q 021344 246 ALHCWPSP------SNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 246 vl~h~~d~------~~~l~~i~r~LkpGG~l~i~~ 274 (314)
.=. . .| ..+++.+.+.|+++|+++...
T Consensus 158 tdp-~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 158 TDP-V-GPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CCC-C-CcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 311 1 12 689999999999999999884
No 163
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.92 E-value=7.7e-09 Score=90.21 Aligned_cols=120 Identities=13% Similarity=0.119 Sum_probs=92.8
Q ss_pred hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (314)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~ 230 (314)
....+++..++...+.++|||||+++|+.+..++.. .++.+++.+|.++...+.|++.++..+ ...+|+++.+|+.+
T Consensus 65 ~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag--~~~~I~~~~G~a~e 142 (247)
T PLN02589 65 ADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG--VAHKIDFREGPALP 142 (247)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC--CCCceEEEeccHHH
Confidence 344455555556666789999999999999988876 346699999999999999999999988 46899999999855
Q ss_pred C-CC------CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 231 L-PF------ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 231 l-p~------~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
. +- ..++||+|+...--. +....+..+.+.|+|||++++-...
T Consensus 143 ~L~~l~~~~~~~~~fD~iFiDadK~---~Y~~y~~~~l~ll~~GGviv~DNvl 192 (247)
T PLN02589 143 VLDQMIEDGKYHGTFDFIFVDADKD---NYINYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_pred HHHHHHhccccCCcccEEEecCCHH---HhHHHHHHHHHhcCCCeEEEEcCCC
Confidence 2 21 136899999865422 2246788888999999998875443
No 164
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.92 E-value=2.5e-09 Score=89.66 Aligned_cols=105 Identities=19% Similarity=0.299 Sum_probs=91.1
Q ss_pred CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecch
Q 021344 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA 246 (314)
Q Consensus 167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~v 246 (314)
...++|||||.|...+.+...+ -.+++-+|.|-.|++.++..-. ....+....+|-+.++|.+++||+|+++..
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qd-----p~i~~~~~v~DEE~Ldf~ens~DLiisSls 146 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQD-----PSIETSYFVGDEEFLDFKENSVDLIISSLS 146 (325)
T ss_pred CcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCC-----CceEEEEEecchhcccccccchhhhhhhhh
Confidence 5679999999999999999987 4589999999999999987311 124577888999999999999999999999
Q ss_pred hccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344 247 LHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 247 l~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
+|++.|...-+.+++..|||+|.++.+.+..
T Consensus 147 lHW~NdLPg~m~~ck~~lKPDg~Fiasmlgg 177 (325)
T KOG2940|consen 147 LHWTNDLPGSMIQCKLALKPDGLFIASMLGG 177 (325)
T ss_pred hhhhccCchHHHHHHHhcCCCccchhHHhcc
Confidence 9999999999999999999999998766543
No 165
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.92 E-value=5.6e-09 Score=93.03 Aligned_cols=86 Identities=12% Similarity=0.199 Sum_probs=69.6
Q ss_pred chHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344 151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (314)
Q Consensus 151 ~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~ 230 (314)
.....+.+.+.+...++.+|||||||+|.++..+++.+. +|+|+|+++.+++.+++++.. .+++++++|+.+
T Consensus 27 ~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~------~~v~~i~~D~~~ 98 (272)
T PRK00274 27 DENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAE------DNLTIIEGDALK 98 (272)
T ss_pred CHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhcc------CceEEEEChhhc
Confidence 445566777777777888999999999999999999976 999999999999999886532 579999999998
Q ss_pred CCCCCCchhhheec
Q 021344 231 LPFASGFVDAVHAG 244 (314)
Q Consensus 231 lp~~~~~fD~V~~~ 244 (314)
+++++-.+|.|+++
T Consensus 99 ~~~~~~~~~~vv~N 112 (272)
T PRK00274 99 VDLSELQPLKVVAN 112 (272)
T ss_pred CCHHHcCcceEEEe
Confidence 87653224666654
No 166
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.91 E-value=5.8e-09 Score=97.06 Aligned_cols=111 Identities=12% Similarity=0.144 Sum_probs=81.7
Q ss_pred HHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-CC
Q 021344 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FA 234 (314)
Q Consensus 156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-~~ 234 (314)
+.+.+++...++.+|||+|||+|.++..++..+. +|+|+|+++.+++.|+++++..+. .+++++.+|+.+.. ..
T Consensus 223 ~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~--~v~~vE~~~~av~~a~~N~~~~~~---~~~~~~~~d~~~~~~~~ 297 (374)
T TIGR02085 223 ATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDT--QLTGIEIESEAIACAQQSAQMLGL---DNLSFAALDSAKFATAQ 297 (374)
T ss_pred HHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCC--eEEEEECCHHHHHHHHHHHHHcCC---CcEEEEECCHHHHHHhc
Confidence 3444454434567999999999999999998764 999999999999999999988763 58999999986532 11
Q ss_pred CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
.++||+|++.=--.. -...+++.+. .++|+++++++.
T Consensus 298 ~~~~D~vi~DPPr~G--~~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 298 MSAPELVLVNPPRRG--IGKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred CCCCCEEEECCCCCC--CcHHHHHHHH-hcCCCeEEEEEe
Confidence 246999987422111 1134556564 479999999887
No 167
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.91 E-value=3.1e-09 Score=97.38 Aligned_cols=143 Identities=27% Similarity=0.372 Sum_probs=109.1
Q ss_pred HHHHHhHHHhcccCCCCCchHHHHHHH------H-HhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHH
Q 021344 133 FLYERGWRQNFNRSGFPGPDEEFKMAQ------E-YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQ 205 (314)
Q Consensus 133 ~~~~~~w~~~~~~~~~~~~~~~~~~l~------~-~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~ 205 (314)
..|.+.|-..+....++......+... . .....++..++|+|||.|....++.... .+.++|+|.++..+..
T Consensus 70 dl~~~~w~~~~h~~~~~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~ 148 (364)
T KOG1269|consen 70 DLYERNWGQSFHFGRIPEGNSNEMFWIRHEGIVALRESCFPGSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFR 148 (364)
T ss_pred hhhhhhhccchhccCccchhHHHHHHHhhcchHHHhhcCcccccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHH
Confidence 345666777666555433322211111 0 1123456689999999999999888775 4599999999998888
Q ss_pred HHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344 206 CYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (314)
Q Consensus 206 a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~ 278 (314)
+........ ....-.++.+|+.+.|+++++||.+.+..+.+|.+++..+++|+.|++||||+++..++...
T Consensus 149 ~~~~~~~~~--l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~ 219 (364)
T KOG1269|consen 149 ANELAKKAY--LDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKT 219 (364)
T ss_pred HHHHHHHHH--hhhhcceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHh
Confidence 877666655 23455568899999999999999999999999999999999999999999999999887653
No 168
>PLN02672 methionine S-methyltransferase
Probab=98.91 E-value=1.6e-08 Score=103.82 Aligned_cols=108 Identities=15% Similarity=0.161 Sum_probs=82.1
Q ss_pred CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-------------CCCCeEEEEecCCCCCC
Q 021344 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-------------LTSNLALVRADVCRLPF 233 (314)
Q Consensus 167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~-------------~~~~v~~~~~d~~~lp~ 233 (314)
+.+|||+|||+|..+..+++..+..+++|+|+|+.+++.|+++++.+++. ...+++++++|+.....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999999887679999999999999999999865310 12479999999865321
Q ss_pred C-CCchhhheec--------------chhccCC------------------CH------HHHHHHHHhhcccCcEEEEEe
Q 021344 234 A-SGFVDAVHAG--------------AALHCWP------------------SP------SNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 234 ~-~~~fD~V~~~--------------~vl~h~~------------------d~------~~~l~~i~r~LkpGG~l~i~~ 274 (314)
. ..+||+|+++ .|.+|-+ +. .+++.+..++|||||.+++..
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 2369999985 1221110 01 467888889999999999877
No 169
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.90 E-value=1.2e-08 Score=85.06 Aligned_cols=119 Identities=20% Similarity=0.263 Sum_probs=85.9
Q ss_pred HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCe---------EEEEeCCHHHHHHHHHHHHhcCCCCCCCeEE
Q 021344 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG---------VVALDFSENMLRQCYDFIKQDNTILTSNLAL 223 (314)
Q Consensus 153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~---------v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~ 223 (314)
.....+.......++..+||.-||+|.++.+.+..+.+.. ++|.|+++.+++.++++++..+ ....+.+
T Consensus 15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag--~~~~i~~ 92 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG--VEDYIDF 92 (179)
T ss_dssp HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT---CGGEEE
T ss_pred HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc--cCCceEE
Confidence 3455666677777888999999999999999888766555 8999999999999999999887 4567999
Q ss_pred EEecCCCCCCCCCchhhheecchhccC-CC---H----HHHHHHHHhhcccCcEEEEEe
Q 021344 224 VRADVCRLPFASGFVDAVHAGAALHCW-PS---P----SNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 224 ~~~d~~~lp~~~~~fD~V~~~~vl~h~-~d---~----~~~l~~i~r~LkpGG~l~i~~ 274 (314)
.+.|+.++++.++++|+|+++--...- .+ . ..+++++.++|++ ..+++.+
T Consensus 93 ~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~ 150 (179)
T PF01170_consen 93 IQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT 150 (179)
T ss_dssp EE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE
T ss_pred EecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE
Confidence 999999999778899999985322111 11 1 3578888999999 4344433
No 170
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.90 E-value=6.9e-09 Score=87.46 Aligned_cols=109 Identities=16% Similarity=0.181 Sum_probs=70.1
Q ss_pred CCCeEEEEcCcccH----HHHHHHHh-----CCCCeEEEEeCCHHHHHHHHHHHHhc-------------------C---
Q 021344 166 QGGLLVDVSCGSGL----FSRKFAKS-----GTYSGVVALDFSENMLRQCYDFIKQD-------------------N--- 214 (314)
Q Consensus 166 ~~~~iLDiGcG~G~----~~~~l~~~-----~~~~~v~giD~s~~~~~~a~~~~~~~-------------------~--- 214 (314)
..-+|+..||++|. ++..+.+. ....+++|+|+|+.+++.|++-.-.. +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45689999999996 33333331 22469999999999999996521110 0
Q ss_pred ---CCCCCCeEEEEecCCCCCCCCCchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEe
Q 021344 215 ---TILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 215 ---~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~ 274 (314)
.....+|.|...|+.+.+...+.||+|+|.+||-++.+. .++++.+++.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 001247899999998844456789999999999999766 479999999999999999865
No 171
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.90 E-value=1e-08 Score=90.72 Aligned_cols=86 Identities=16% Similarity=0.285 Sum_probs=71.6
Q ss_pred hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (314)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l 231 (314)
....+.+.+.+...++.+|||||||+|.++..+++.+. +++++|+++.+++.+++++.. ..+++++.+|+.++
T Consensus 15 ~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~--~v~~vEid~~~~~~l~~~~~~-----~~~v~ii~~D~~~~ 87 (258)
T PRK14896 15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAK--KVYAIELDPRLAEFLRDDEIA-----AGNVEIIEGDALKV 87 (258)
T ss_pred HHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHhcc-----CCCEEEEEeccccC
Confidence 44566777777777789999999999999999999864 899999999999999987753 25899999999887
Q ss_pred CCCCCchhhheecch
Q 021344 232 PFASGFVDAVHAGAA 246 (314)
Q Consensus 232 p~~~~~fD~V~~~~v 246 (314)
+++ .||.|+++--
T Consensus 88 ~~~--~~d~Vv~NlP 100 (258)
T PRK14896 88 DLP--EFNKVVSNLP 100 (258)
T ss_pred Cch--hceEEEEcCC
Confidence 765 4898887644
No 172
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.89 E-value=2.1e-08 Score=94.85 Aligned_cols=102 Identities=15% Similarity=0.249 Sum_probs=74.4
Q ss_pred CCeEEEEcCcccHHHHHHHHhC----CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhe
Q 021344 167 GGLLVDVSCGSGLFSRKFAKSG----TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 242 (314)
Q Consensus 167 ~~~iLDiGcG~G~~~~~l~~~~----~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~ 242 (314)
+..|||||||+|-+....++.+ ...+|+++|-++.++...+++++..+ ...+|+++.+|++++..+ +++|+|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~--w~~~V~vi~~d~r~v~lp-ekvDIIV 263 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG--WGDKVTVIHGDMREVELP-EKVDIIV 263 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT--TTTTEEEEES-TTTSCHS-S-EEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC--CCCeEEEEeCcccCCCCC-CceeEEE
Confidence 5679999999999987766654 34699999999999888888767666 458899999999998765 4899999
Q ss_pred ecc--hhccCCCHHHHHHHHHhhcccCcEEE
Q 021344 243 AGA--ALHCWPSPSNAVAEISRILRSGGVFV 271 (314)
Q Consensus 243 ~~~--vl~h~~d~~~~l~~i~r~LkpGG~l~ 271 (314)
+-. .+-.-.--...|....|.|||||+++
T Consensus 264 SElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 264 SELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp E---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 721 11111122356888999999999876
No 173
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=1.6e-08 Score=82.93 Aligned_cols=73 Identities=25% Similarity=0.342 Sum_probs=62.5
Q ss_pred cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhee
Q 021344 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 243 (314)
Q Consensus 164 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~ 243 (314)
.-.+.+|+|+|||||.++...+..|+ .+|+|+|+++++++.++++.++.. .++.++.+|+.+.. +.||.|++
T Consensus 43 ~l~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l~----g~v~f~~~dv~~~~---~~~dtvim 114 (198)
T COG2263 43 DLEGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEELL----GDVEFVVADVSDFR---GKFDTVIM 114 (198)
T ss_pred CcCCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhhC----CceEEEEcchhhcC---CccceEEE
Confidence 44677899999999999999999885 599999999999999999998843 78999999998863 56777776
Q ss_pred c
Q 021344 244 G 244 (314)
Q Consensus 244 ~ 244 (314)
+
T Consensus 115 N 115 (198)
T COG2263 115 N 115 (198)
T ss_pred C
Confidence 4
No 174
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.87 E-value=8e-09 Score=92.35 Aligned_cols=103 Identities=20% Similarity=0.298 Sum_probs=81.3
Q ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (314)
Q Consensus 165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~ 244 (314)
-.+++|||+|||+|-++...++.| ..+|+++|.|.-+ +.|++.+..++ ....++++++.++++.++.++.|+|++-
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~--~~~ii~vi~gkvEdi~LP~eKVDiIvSE 134 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNG--LEDVITVIKGKVEDIELPVEKVDIIVSE 134 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcC--ccceEEEeecceEEEecCccceeEEeeh
Confidence 357899999999999999999999 5699999987755 99999999888 4567999999998876667899999984
Q ss_pred ch---hccCCCHHHHHHHHHhhcccCcEEE
Q 021344 245 AA---LHCWPSPSNAVAEISRILRSGGVFV 271 (314)
Q Consensus 245 ~v---l~h~~d~~~~l~~i~r~LkpGG~l~ 271 (314)
+. |-+=.-...+|-.=-+.|+|||.++
T Consensus 135 WMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 135 WMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 43 2221123445555568999999865
No 175
>PRK04148 hypothetical protein; Provisional
Probab=98.87 E-value=2.9e-08 Score=77.84 Aligned_cols=106 Identities=12% Similarity=0.172 Sum_probs=75.6
Q ss_pred HHHHHHHHhccCCCCeEEEEcCcccH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344 154 EFKMAQEYFKSAQGGLLVDVSCGSGL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (314)
Q Consensus 154 ~~~~l~~~l~~~~~~~iLDiGcG~G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp 232 (314)
..+.+.+.+...++.++||||||.|. ++..|++.|. +|+++|+++..++.+++ ..++++.+|+.+..
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~--~ViaIDi~~~aV~~a~~----------~~~~~v~dDlf~p~ 71 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF--DVIVIDINEKAVEKAKK----------LGLNAFVDDLFNPN 71 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC--EEEEEECCHHHHHHHHH----------hCCeEEECcCCCCC
Confidence 34456666665567899999999996 8888888876 99999999999988877 45789999998754
Q ss_pred CC-CCchhhheecchhccCCCHHHHHHHHHhhccc-CcEEEEEeccc
Q 021344 233 FA-SGFVDAVHAGAALHCWPSPSNAVAEISRILRS-GGVFVGTTFLR 277 (314)
Q Consensus 233 ~~-~~~fD~V~~~~vl~h~~d~~~~l~~i~r~Lkp-GG~l~i~~~~~ 277 (314)
+. -+.+|+|.+..- |..+..-+.++-|. |.-+++...+.
T Consensus 72 ~~~y~~a~liysirp------p~el~~~~~~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 72 LEIYKNAKLIYSIRP------PRDLQPFILELAKKINVPLIIKPLSG 112 (134)
T ss_pred HHHHhcCCEEEEeCC------CHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 32 346888888643 44444444444433 56677666544
No 176
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.87 E-value=6e-08 Score=85.54 Aligned_cols=80 Identities=11% Similarity=0.235 Sum_probs=66.4
Q ss_pred chHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344 151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (314)
Q Consensus 151 ~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~ 230 (314)
.....+.+.+.+...++.+|||||||+|.++..+++.+. .++++|+++.+++.++++... ..+++++.+|+..
T Consensus 14 d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~-----~~~v~v~~~D~~~ 86 (253)
T TIGR00755 14 DESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL-----YERLEVIEGDALK 86 (253)
T ss_pred CHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc-----CCcEEEEECchhc
Confidence 344556677777777788999999999999999999986 799999999999999987643 2689999999988
Q ss_pred CCCCCCchh
Q 021344 231 LPFASGFVD 239 (314)
Q Consensus 231 lp~~~~~fD 239 (314)
.++. +||
T Consensus 87 ~~~~--~~d 93 (253)
T TIGR00755 87 VDLP--DFP 93 (253)
T ss_pred CChh--HcC
Confidence 8765 466
No 177
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.85 E-value=8e-08 Score=84.00 Aligned_cols=108 Identities=13% Similarity=0.185 Sum_probs=90.4
Q ss_pred CCCCeEEEEcCcccHHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---CCCCchh
Q 021344 165 AQGGLLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVD 239 (314)
Q Consensus 165 ~~~~~iLDiGcG~G~~~~~l~~~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp---~~~~~fD 239 (314)
...-+||||.||.|++........+. .++.-.|+|+..++..++.+++.++ ..-++|.++|+.+.. --+-..+
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL--~~i~~f~~~dAfd~~~l~~l~p~P~ 211 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL--EDIARFEQGDAFDRDSLAALDPAPT 211 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC--ccceEEEecCCCCHhHhhccCCCCC
Confidence 45678999999999998888887664 6899999999999999999999884 345599999987631 1133579
Q ss_pred hheecchhccCCCHH---HHHHHHHhhcccCcEEEEEe
Q 021344 240 AVHAGAALHCWPSPS---NAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 240 ~V~~~~vl~h~~d~~---~~l~~i~r~LkpGG~l~i~~ 274 (314)
+++.+..+|.++|-. ..++.+.+.+.|||+++.+.
T Consensus 212 l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 212 LAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred EEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 999999999999854 57999999999999998866
No 178
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.85 E-value=1.8e-08 Score=90.46 Aligned_cols=87 Identities=16% Similarity=0.277 Sum_probs=71.9
Q ss_pred hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (314)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l 231 (314)
....+.+.+.+...++.+|||||||+|.++..+++.+. +++++|+++.+++.+++++...+ ...+++++.+|+.+.
T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~~--~~~~v~ii~~Dal~~ 97 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNSP--LASKLEVIEGDALKT 97 (294)
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhcC--CCCcEEEEECCHhhh
Confidence 34556777777777889999999999999999998865 89999999999999999887654 236899999999876
Q ss_pred CCCCCchhhheec
Q 021344 232 PFASGFVDAVHAG 244 (314)
Q Consensus 232 p~~~~~fD~V~~~ 244 (314)
+++ .||+|+++
T Consensus 98 ~~~--~~d~VvaN 108 (294)
T PTZ00338 98 EFP--YFDVCVAN 108 (294)
T ss_pred ccc--ccCEEEec
Confidence 643 68988764
No 179
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.83 E-value=2.3e-08 Score=92.94 Aligned_cols=111 Identities=16% Similarity=0.205 Sum_probs=85.2
Q ss_pred HHHHHhccC-CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC
Q 021344 157 MAQEYFKSA-QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (314)
Q Consensus 157 ~l~~~l~~~-~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~ 235 (314)
.+.+.+... .+.+|||++||+|.++..++......+|+++|+++.+++.++++++.++. .++.++.+|+..+....
T Consensus 47 ~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~---~~~~v~~~Da~~~l~~~ 123 (382)
T PRK04338 47 LVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL---ENEKVFNKDANALLHEE 123 (382)
T ss_pred HHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC---CceEEEhhhHHHHHhhc
Confidence 444444332 34689999999999999998765445899999999999999999988763 56778999986532214
Q ss_pred CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
++||+|++.- ...+..+++...+.+++||+++++.
T Consensus 124 ~~fD~V~lDP----~Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 124 RKFDVVDIDP----FGSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred CCCCEEEECC----CCCcHHHHHHHHHHhcCCCEEEEEe
Confidence 5799999742 1445788888788899999999984
No 180
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.78 E-value=3.4e-08 Score=88.52 Aligned_cols=99 Identities=16% Similarity=0.251 Sum_probs=82.9
Q ss_pred CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecch
Q 021344 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA 246 (314)
Q Consensus 167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~v 246 (314)
-...+|+|.|.|..+..+...++ .+-+++++...+-.++..+. .+|+.+.+|..+- .|. -|+|++-++
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~-------~gV~~v~gdmfq~-~P~--~daI~mkWi 245 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA-------PGVEHVAGDMFQD-TPK--GDAIWMKWI 245 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc-------CCcceeccccccc-CCC--cCeEEEEee
Confidence 36899999999999999999887 78899999888777776542 3488888998664 443 469999999
Q ss_pred hccCCCHH--HHHHHHHhhcccCcEEEEEeccc
Q 021344 247 LHCWPSPS--NAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 247 l~h~~d~~--~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
|||+.|-+ ++|+++++.|+|||.+++.+...
T Consensus 246 LhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~ 278 (342)
T KOG3178|consen 246 LHDWTDEDCVKILKNCKKSLPPGGKIIVVENVT 278 (342)
T ss_pred cccCChHHHHHHHHHHHHhCCCCCEEEEEeccC
Confidence 99999875 89999999999999999988743
No 181
>PRK00536 speE spermidine synthase; Provisional
Probab=98.77 E-value=9.5e-08 Score=83.87 Aligned_cols=100 Identities=14% Similarity=0.137 Sum_probs=77.7
Q ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCC-CCCCCeEEEEecCCCCCCCCCchhhhee
Q 021344 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCRLPFASGFVDAVHA 243 (314)
Q Consensus 165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-~~~~~v~~~~~d~~~lp~~~~~fD~V~~ 243 (314)
...++||-||.|.|..++++.++.. +|+.+|+++.+++.+++.+..... -..++++++.. +.+ -..++||+|+.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~--~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIv 145 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT--HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIIC 145 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC--eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEE
Confidence 4568999999999999999999853 999999999999999995554211 13467777752 221 12368999998
Q ss_pred cchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 244 GAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 244 ~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
... .+..+++.+.+.|+|||+++...
T Consensus 146 Ds~-----~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 146 LQE-----PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred cCC-----CChHHHHHHHHhcCCCcEEEECC
Confidence 642 45688899999999999998865
No 182
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.77 E-value=1.2e-07 Score=79.81 Aligned_cols=120 Identities=14% Similarity=0.110 Sum_probs=82.7
Q ss_pred HHHHHHHHHhc-cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344 153 EEFKMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (314)
Q Consensus 153 ~~~~~l~~~l~-~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l 231 (314)
...+.+...+. ..++.++||++||+|.++..++.++. ..|+++|.++.+++.++++++..+. ..+++++.+|+.+.
T Consensus 35 ~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~--~~~~~~~~~D~~~~ 111 (189)
T TIGR00095 35 VVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKS--GEQAEVVRNSALRA 111 (189)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCC--cccEEEEehhHHHH
Confidence 33334444432 23578999999999999999999985 4899999999999999999988762 34789999998442
Q ss_pred -C-C-CCC-chhhheecchhccCCCHHHHHHHHH--hhcccCcEEEEEecc
Q 021344 232 -P-F-ASG-FVDAVHAGAALHCWPSPSNAVAEIS--RILRSGGVFVGTTFL 276 (314)
Q Consensus 232 -p-~-~~~-~fD~V~~~~vl~h~~d~~~~l~~i~--r~LkpGG~l~i~~~~ 276 (314)
. + ... .||+|+..=-... ......+..+. .+|+++|.+++....
T Consensus 112 l~~~~~~~~~~dvv~~DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 112 LKFLAKKPTFDNVIYLDPPFFN-GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred HHHhhccCCCceEEEECcCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 2 1 122 4788876422221 12344455443 368889988887644
No 183
>PLN02823 spermine synthase
Probab=98.76 E-value=1.1e-07 Score=86.85 Aligned_cols=108 Identities=18% Similarity=0.230 Sum_probs=81.6
Q ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCC-CCCCCeEEEEecCCC-CCCCCCchhhhee
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCR-LPFASGFVDAVHA 243 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-~~~~~v~~~~~d~~~-lp~~~~~fD~V~~ 243 (314)
..++||.||+|.|..++.+.+.....+++.+|+++.+++.+++.+..... ....+++++.+|... +...+++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 45789999999999999999876556899999999999999998754210 024789999999865 2334568999998
Q ss_pred cchhccCC-C------HHHHHH-HHHhhcccCcEEEEEe
Q 021344 244 GAALHCWP-S------PSNAVA-EISRILRSGGVFVGTT 274 (314)
Q Consensus 244 ~~vl~h~~-d------~~~~l~-~i~r~LkpGG~l~i~~ 274 (314)
... .... . ...+++ .+.+.|+|||++++..
T Consensus 183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 631 1110 0 135787 8999999999987754
No 184
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=5.3e-08 Score=80.83 Aligned_cols=112 Identities=26% Similarity=0.358 Sum_probs=85.2
Q ss_pred HHHHHhc--cCCCCeEEEEcCcccHHHHHHHHh-C-CCCeEEEEeCCHHHHHHHHHHHHhcC-------CCCCCCeEEEE
Q 021344 157 MAQEYFK--SAQGGLLVDVSCGSGLFSRKFAKS-G-TYSGVVALDFSENMLRQCYDFIKQDN-------TILTSNLALVR 225 (314)
Q Consensus 157 ~l~~~l~--~~~~~~iLDiGcG~G~~~~~l~~~-~-~~~~v~giD~s~~~~~~a~~~~~~~~-------~~~~~~v~~~~ 225 (314)
.+.++|. ..++.++||+|.|+|+++..++.. + ++..++|||.-++.++.+++++...- .....++.++.
T Consensus 71 ~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv 150 (237)
T KOG1661|consen 71 TALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV 150 (237)
T ss_pred HHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence 4444555 567999999999999998888754 2 23355999999999999999887642 00235788999
Q ss_pred ecCCCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 226 ~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
+|..........||.|++... .....+++...|++||.+++-.
T Consensus 151 GDgr~g~~e~a~YDaIhvGAa------a~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 151 GDGRKGYAEQAPYDAIHVGAA------ASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred CCccccCCccCCcceEEEccC------ccccHHHHHHhhccCCeEEEee
Confidence 999887667789999999754 3445677777899999998865
No 185
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.72 E-value=9.2e-08 Score=79.80 Aligned_cols=98 Identities=15% Similarity=0.198 Sum_probs=83.5
Q ss_pred eEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecchhc
Q 021344 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH 248 (314)
Q Consensus 169 ~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~ 248 (314)
+++|||+|.|.=+..++-..|+.+++.+|....-+...+.....-++ .|++++++.+++ +...++||+|++..+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L---~nv~v~~~R~E~-~~~~~~fd~v~aRAv-- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL---SNVEVINGRAEE-PEYRESFDVVTARAV-- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT----SSEEEEES-HHH-TTTTT-EEEEEEESS--
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC---CCEEEEEeeecc-cccCCCccEEEeehh--
Confidence 79999999999999999888888999999999999998888888774 689999999988 445678999999876
Q ss_pred cCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 249 CWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 249 h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
.+...++.-+...|++||.++..-
T Consensus 125 --~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 125 --APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp --SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred --cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 567888999999999999998876
No 186
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.71 E-value=1.2e-08 Score=88.70 Aligned_cols=108 Identities=26% Similarity=0.419 Sum_probs=87.0
Q ss_pred HHHHHhccC-CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCe-EEEEecCCCCCCC
Q 021344 157 MAQEYFKSA-QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNL-ALVRADVCRLPFA 234 (314)
Q Consensus 157 ~l~~~l~~~-~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v-~~~~~d~~~lp~~ 234 (314)
+..+++... .+..++|+|||.|.++.. .+.+-++|.|.+...+..+++ .+. ....+|+..+|+.
T Consensus 35 ~v~qfl~~~~~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~----------~~~~~~~~ad~l~~p~~ 100 (293)
T KOG1331|consen 35 MVRQFLDSQPTGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKR----------SGGDNVCRADALKLPFR 100 (293)
T ss_pred HHHHHHhccCCcceeeecccCCcccCcC----CCcceeeecchhhhhcccccc----------CCCceeehhhhhcCCCC
Confidence 344444432 366799999999976532 255689999999998888876 334 6888999999999
Q ss_pred CCchhhheecchhccCCCH---HHHHHHHHhhcccCcEEEEEecccC
Q 021344 235 SGFVDAVHAGAALHCWPSP---SNAVAEISRILRSGGVFVGTTFLRY 278 (314)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~---~~~l~~i~r~LkpGG~l~i~~~~~~ 278 (314)
+.+||.+++..|+||+..- ..+++++.++|+|||...+..+...
T Consensus 101 ~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 101 EESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred CCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 9999999999999999755 4789999999999999888877654
No 187
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.70 E-value=3.9e-08 Score=83.01 Aligned_cols=100 Identities=21% Similarity=0.334 Sum_probs=75.4
Q ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (314)
Q Consensus 165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~ 244 (314)
.++.+|||..||.|.|+..+++.+....|+++|+++.+++..+++++.++ ....+..+.+|..+... .+.||-|++.
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNk--v~~~i~~~~~D~~~~~~-~~~~drvim~ 176 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNK--VENRIEVINGDAREFLP-EGKFDRVIMN 176 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT---TTTEEEEES-GGG----TT-EEEEEE-
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcC--CCCeEEEEcCCHHHhcC-ccccCEEEEC
Confidence 45889999999999999999996656699999999999999999999988 45779999999987654 6789988875
Q ss_pred chhccCCCHHHHHHHHHhhcccCcEEE
Q 021344 245 AALHCWPSPSNAVAEISRILRSGGVFV 271 (314)
Q Consensus 245 ~vl~h~~d~~~~l~~i~r~LkpGG~l~ 271 (314)
.. .....+|..+.+++|+||++-
T Consensus 177 lp----~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 177 LP----ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -T----SSGGGGHHHHHHHEEEEEEEE
T ss_pred Ch----HHHHHHHHHHHHHhcCCcEEE
Confidence 42 233468999999999999874
No 188
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.70 E-value=1.6e-07 Score=82.59 Aligned_cols=128 Identities=20% Similarity=0.200 Sum_probs=95.6
Q ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh---cC----------------------------
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ---DN---------------------------- 214 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~---~~---------------------------- 214 (314)
...+||--|||.|+++..++..|. .+.|.|.|--|+-..+-.+.. .+
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~--~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY--AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc--eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 456899999999999999999987 999999999886554433221 11
Q ss_pred ------CCCCCCeEEEEecCCCCCCCC---CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccCCCC----
Q 021344 215 ------TILTSNLALVRADVCRLPFAS---GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSS---- 281 (314)
Q Consensus 215 ------~~~~~~v~~~~~d~~~lp~~~---~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~~~~---- 281 (314)
.....++....||+.+....+ ++||+|+..+-|.-..|.-..++.|.++|||||+++=..+..++..
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~ 213 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSI 213 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCC
Confidence 112357888888887765444 7999999999899888999999999999999998887776654322
Q ss_pred -----CccchHHHHHHHHh
Q 021344 282 -----TSLTGRVLREVMLI 295 (314)
Q Consensus 282 -----~~~~~~~l~~~~~~ 295 (314)
..+..+.+......
T Consensus 214 ~~~~sveLs~eEi~~l~~~ 232 (270)
T PF07942_consen 214 PNEMSVELSLEEIKELIEK 232 (270)
T ss_pred CCCcccCCCHHHHHHHHHH
Confidence 23445566665544
No 189
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.67 E-value=6.9e-08 Score=84.59 Aligned_cols=109 Identities=11% Similarity=0.135 Sum_probs=80.7
Q ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCC-CCCCCeEEEEecCCCC-CCCCC-chhhhe
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCRL-PFASG-FVDAVH 242 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-~~~~~v~~~~~d~~~l-p~~~~-~fD~V~ 242 (314)
+.++||-||.|.|..++.+.+..+..+++.+|+++..++.+++.+..... ....+++++.+|.... .-..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 57899999999999999999887566999999999999999998765321 0246899999998542 12233 899999
Q ss_pred ecchhccCCC----HHHHHHHHHhhcccCcEEEEEe
Q 021344 243 AGAALHCWPS----PSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 243 ~~~vl~h~~d----~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
....-...+. ...+++.+.+.|+|||++++..
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 7433211111 2578999999999999999877
No 190
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.67 E-value=1.1e-07 Score=83.58 Aligned_cols=108 Identities=13% Similarity=0.135 Sum_probs=81.7
Q ss_pred CCeEEEEcCcccH----HHHHHHHhC-----CCCeEEEEeCCHHHHHHHHHHHHh-----cC------------C-----
Q 021344 167 GGLLVDVSCGSGL----FSRKFAKSG-----TYSGVVALDFSENMLRQCYDFIKQ-----DN------------T----- 215 (314)
Q Consensus 167 ~~~iLDiGcG~G~----~~~~l~~~~-----~~~~v~giD~s~~~~~~a~~~~~~-----~~------------~----- 215 (314)
.-+|+-.||++|. .+..+.+.+ ...+++|+|+|..+++.|+.-.-. .+ .
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5689999999996 444445544 257999999999999999652211 11 0
Q ss_pred ----CCCCCeEEEEecCCCCCCCCCchhhheecchhccCCCHH--HHHHHHHhhcccCcEEEEEe
Q 021344 216 ----ILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 216 ----~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpGG~l~i~~ 274 (314)
.....|.|...|+...++..+.||+|+|.+||-++..+. +++..++..|+|||+|++-.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 012457888888876653456799999999999998764 79999999999999999865
No 191
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.66 E-value=2e-07 Score=88.70 Aligned_cols=118 Identities=17% Similarity=0.159 Sum_probs=90.1
Q ss_pred HHHh--ccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-CC
Q 021344 159 QEYF--KSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FA 234 (314)
Q Consensus 159 ~~~l--~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-~~ 234 (314)
...+ ...++.+|||+++|.|.-+.+++... ....+++.|+++..+...+++++..+. .++.+...|...+. ..
T Consensus 104 ~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~---~nv~v~~~D~~~~~~~~ 180 (470)
T PRK11933 104 VAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV---SNVALTHFDGRVFGAAL 180 (470)
T ss_pred HHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCchhhhhhhc
Confidence 3445 66789999999999999888888764 235899999999999999999998873 67888888887653 22
Q ss_pred CCchhhhee----c--chhccCCCH----------------HHHHHHHHhhcccCcEEEEEecccCC
Q 021344 235 SGFVDAVHA----G--AALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLRYT 279 (314)
Q Consensus 235 ~~~fD~V~~----~--~vl~h~~d~----------------~~~l~~i~r~LkpGG~l~i~~~~~~~ 279 (314)
.+.||.|+. + +++..-++. ..+|..+.+.|||||+|+-+|.+-.+
T Consensus 181 ~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 181 PETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred hhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 457999994 2 233332211 36799999999999999888866443
No 192
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.66 E-value=6e-08 Score=81.04 Aligned_cols=126 Identities=12% Similarity=0.176 Sum_probs=90.1
Q ss_pred CCchHHHHHHHHHhcc--CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEe
Q 021344 149 PGPDEEFKMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226 (314)
Q Consensus 149 ~~~~~~~~~l~~~l~~--~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~ 226 (314)
|..+...+.+...+.. -++.++||+-||+|.++.++..+|. .+|+.+|.+...++..+++++..+. ..++..+..
T Consensus 23 PT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l~~--~~~~~v~~~ 99 (183)
T PF03602_consen 23 PTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKLGL--EDKIRVIKG 99 (183)
T ss_dssp SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT---GGGEEEEES
T ss_pred CCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHhCC--Ccceeeecc
Confidence 5556666667766664 3788999999999999999999984 5999999999999999999998763 346899999
Q ss_pred cCCC-CC---CCCCchhhheecchhccCCCHHHHHHHHH--hhcccCcEEEEEeccc
Q 021344 227 DVCR-LP---FASGFVDAVHAGAALHCWPSPSNAVAEIS--RILRSGGVFVGTTFLR 277 (314)
Q Consensus 227 d~~~-lp---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~--r~LkpGG~l~i~~~~~ 277 (314)
|+.. ++ ....+||+|++.=-...-.....++..+. .+|+++|.+++.....
T Consensus 100 d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 100 DAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp SHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 8643 21 23678999998532221111256777776 7899999999988655
No 193
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.63 E-value=1.6e-07 Score=86.78 Aligned_cols=110 Identities=18% Similarity=0.179 Sum_probs=87.1
Q ss_pred CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC----CCCCCchhhhe
Q 021344 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGFVDAVH 242 (314)
Q Consensus 167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l----p~~~~~fD~V~ 242 (314)
|++|||+=|=||.++.+++..|. .+|++||.|...++.|+++++.+++ ...++.++++|+.+. .-...+||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA-~~vt~VD~S~~al~~a~~N~~LNg~-~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGA-SEVTSVDLSKRALEWARENAELNGL-DGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCC-CceEEEeccHHHHHHHHHHHHhcCC-CccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 88999999999999999998873 5999999999999999999999885 345689999998653 12244899999
Q ss_pred ec---c------hhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344 243 AG---A------ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (314)
Q Consensus 243 ~~---~------vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~ 278 (314)
+. + ...-..+-..++..+.++|+|||.+++.+....
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 72 1 011111234678899999999999999996653
No 194
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.62 E-value=1.5e-07 Score=86.79 Aligned_cols=111 Identities=15% Similarity=0.184 Sum_probs=77.2
Q ss_pred HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (314)
Q Consensus 153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp 232 (314)
.+.+.+.+++... +.+|||++||+|.++..+++... +|+|+|+++.+++.|+++++..++ .++.++.+|+.+.-
T Consensus 185 ~l~~~v~~~~~~~-~~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~---~~v~~~~~d~~~~~ 258 (353)
T TIGR02143 185 KMLEWACEVTQGS-KGDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNI---DNVQIIRMSAEEFT 258 (353)
T ss_pred HHHHHHHHHhhcC-CCcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCC---CcEEEEEcCHHHHH
Confidence 3445555555432 34799999999999999988764 999999999999999999988763 57999999986521
Q ss_pred CC----------C------CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 233 FA----------S------GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 233 ~~----------~------~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
-. . ..||+|+..=- .-.-...+++.+. +|+++++++.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP--R~G~~~~~l~~l~---~~~~ivYvsC 311 (353)
T TIGR02143 259 QAMNGVREFRRLKGIDLKSYNCSTIFVDPP--RAGLDPDTCKLVQ---AYERILYISC 311 (353)
T ss_pred HHHhhccccccccccccccCCCCEEEECCC--CCCCcHHHHHHHH---cCCcEEEEEc
Confidence 10 1 13788886311 0000124445443 4788888877
No 195
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.61 E-value=1.7e-07 Score=86.87 Aligned_cols=112 Identities=14% Similarity=0.196 Sum_probs=78.4
Q ss_pred hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (314)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l 231 (314)
+..++.+.+++... +.++||++||+|.++..+++... +|+|+|.++.+++.++++++..+. .++.++.+|+.+.
T Consensus 193 e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~---~~v~~~~~d~~~~ 266 (362)
T PRK05031 193 EKMLEWALDATKGS-KGDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGI---DNVQIIRMSAEEF 266 (362)
T ss_pred HHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCC---CcEEEEECCHHHH
Confidence 34455555655432 35799999999999998888764 999999999999999999988763 5899999998652
Q ss_pred -C-CC--------------CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 232 -P-FA--------------SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 232 -p-~~--------------~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
+ +. ..+||+|+..=-- -.-...+++.+. +|+++++++.
T Consensus 267 l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR--~G~~~~~l~~l~---~~~~ivyvSC 320 (362)
T PRK05031 267 TQAMNGVREFNRLKGIDLKSYNFSTIFVDPPR--AGLDDETLKLVQ---AYERILYISC 320 (362)
T ss_pred HHHHhhcccccccccccccCCCCCEEEECCCC--CCCcHHHHHHHH---ccCCEEEEEe
Confidence 1 10 1258999873110 000134445544 3788888877
No 196
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.60 E-value=4e-07 Score=78.55 Aligned_cols=90 Identities=17% Similarity=0.213 Sum_probs=60.5
Q ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCe-EEEEecCCCCC-----CCCCch
Q 021344 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNL-ALVRADVCRLP-----FASGFV 238 (314)
Q Consensus 165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v-~~~~~d~~~lp-----~~~~~f 238 (314)
.++.++||+|||+|.++..+++.+ ..+|+|+|+++.++....+ . ..++ .+...|+.... ..-..+
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~~l~---~-----~~~v~~~~~~ni~~~~~~~~~~d~~~~ 144 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAEKLR---Q-----DERVKVLERTNIRYVTPADIFPDFATF 144 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHh---c-----CCCeeEeecCCcccCCHhHcCCCceee
Confidence 367789999999999999999986 3589999999987765222 1 1232 23333444222 112357
Q ss_pred hhheecchhccCCCHHHHHHHHHhhcccCcEEEE
Q 021344 239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVG 272 (314)
Q Consensus 239 D~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i 272 (314)
|+++++.. ..+..+.+.|+| |.+++
T Consensus 145 DvsfiS~~--------~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 145 DVSFISLI--------SILPELDLLLNP-NDLTL 169 (228)
T ss_pred eEEEeehH--------hHHHHHHHHhCc-CeEEE
Confidence 76666543 348899999999 76654
No 197
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.60 E-value=2.8e-07 Score=83.32 Aligned_cols=80 Identities=14% Similarity=0.109 Sum_probs=60.4
Q ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc-CCCCCCCeEEEE-ecCCCCC----CCCCchh
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVR-ADVCRLP----FASGFVD 239 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~v~~~~-~d~~~lp----~~~~~fD 239 (314)
.+.++||||||+|.....++.+.+..+++|+|+++.+++.|+++++.. + ...++.+.. .|...+. ...+.||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~--l~~~I~~~~~~~~~~i~~~i~~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPG--LNGAIRLRLQKDSKAIFKGIIHKNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccC--CcCcEEEEEccchhhhhhcccccCCceE
Confidence 467899999999988777776655679999999999999999999987 5 345777764 3332211 2356899
Q ss_pred hheecchh
Q 021344 240 AVHAGAAL 247 (314)
Q Consensus 240 ~V~~~~vl 247 (314)
+|+|+=-+
T Consensus 192 livcNPPf 199 (321)
T PRK11727 192 ATLCNPPF 199 (321)
T ss_pred EEEeCCCC
Confidence 99997443
No 198
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=7e-08 Score=75.40 Aligned_cols=86 Identities=19% Similarity=0.367 Sum_probs=70.0
Q ss_pred HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCC
Q 021344 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236 (314)
Q Consensus 157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~ 236 (314)
.+.+....-+|++++|+|||.|-+........ ...|+|+|+++.+++.+++++++.. .++.++++|+.++.+..+
T Consensus 39 ~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~-~e~vlGfDIdpeALEIf~rNaeEfE----vqidlLqcdildle~~~g 113 (185)
T KOG3420|consen 39 TIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPK-NESVLGFDIDPEALEIFTRNAEEFE----VQIDLLQCDILDLELKGG 113 (185)
T ss_pred HHHhhhccccCcchhhhcCchhhhHHHhhcCC-CceEEeeecCHHHHHHHhhchHHhh----hhhheeeeeccchhccCC
Confidence 33444455578999999999999986665544 5689999999999999999988865 678999999999888888
Q ss_pred chhhheecchh
Q 021344 237 FVDAVHAGAAL 247 (314)
Q Consensus 237 ~fD~V~~~~vl 247 (314)
.||.++.+--+
T Consensus 114 ~fDtaviNppF 124 (185)
T KOG3420|consen 114 IFDTAVINPPF 124 (185)
T ss_pred eEeeEEecCCC
Confidence 99999886443
No 199
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.58 E-value=4.2e-08 Score=82.69 Aligned_cols=113 Identities=19% Similarity=0.214 Sum_probs=83.7
Q ss_pred HHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC--CCCCCc
Q 021344 160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGF 237 (314)
Q Consensus 160 ~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l--p~~~~~ 237 (314)
+..+.+.+.+|||...|-|+++....++|. ..|+.+|.+++.++.|.-+-=..++ ...+++++.+|+.+. .|.|++
T Consensus 128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l-~~~~i~iilGD~~e~V~~~~D~s 205 (287)
T COG2521 128 ELVKVKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSREL-FEIAIKIILGDAYEVVKDFDDES 205 (287)
T ss_pred heeccccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccc-cccccEEecccHHHHHhcCCccc
Confidence 345566799999999999999999999984 5899999999998887653222222 224689999998663 477999
Q ss_pred hhhheec---chhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 238 VDAVHAG---AALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 238 fD~V~~~---~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
||+|+.. +.+.----...+.++++|+|||||.++=.+
T Consensus 206 fDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 206 FDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred cceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 9999852 111100012578999999999999997655
No 200
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.57 E-value=5.5e-07 Score=76.11 Aligned_cols=124 Identities=18% Similarity=0.195 Sum_probs=95.4
Q ss_pred CCCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEe
Q 021344 148 FPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226 (314)
Q Consensus 148 ~~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~ 226 (314)
+....+...++..++..-..+++||||.=+|+.+..++...+ +.+|+++|++++..+.+.+..+..+ ...+|+++++
T Consensus 55 m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag--v~~KI~~i~g 132 (237)
T KOG1663|consen 55 MLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG--VDHKITFIEG 132 (237)
T ss_pred eecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc--ccceeeeeec
Confidence 344555566666666666778999999999998887777643 5699999999999999999999888 5789999999
Q ss_pred cCCC-C-----CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 227 DVCR-L-----PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 227 d~~~-l-----p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
++.+ + ....++||++|..+--. +-...+.++.++||+||++++-...
T Consensus 133 ~a~esLd~l~~~~~~~tfDfaFvDadK~---nY~~y~e~~l~Llr~GGvi~~DNvl 185 (237)
T KOG1663|consen 133 PALESLDELLADGESGTFDFAFVDADKD---NYSNYYERLLRLLRVGGVIVVDNVL 185 (237)
T ss_pred chhhhHHHHHhcCCCCceeEEEEccchH---HHHHHHHHHHhhcccccEEEEeccc
Confidence 9854 1 13467899999643211 2237789999999999999985533
No 201
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=4.7e-07 Score=73.62 Aligned_cols=110 Identities=18% Similarity=0.275 Sum_probs=82.6
Q ss_pred cCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhe
Q 021344 164 SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 242 (314)
Q Consensus 164 ~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~ 242 (314)
......+||||||+|..+..+++. +++..+.++|+++.+++...+.++.++ .++..+++|+..- +..++.|+++
T Consensus 41 ~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~----~~~~~V~tdl~~~-l~~~~VDvLv 115 (209)
T KOG3191|consen 41 GHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR----VHIDVVRTDLLSG-LRNESVDVLV 115 (209)
T ss_pred hcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC----CccceeehhHHhh-hccCCccEEE
Confidence 334678999999999998888876 567789999999999999888888766 6788999998652 2347888887
Q ss_pred ecchhc-----cC------------CC----HHHHHHHHHhhcccCcEEEEEecccC
Q 021344 243 AGAALH-----CW------------PS----PSNAVAEISRILRSGGVFVGTTFLRY 278 (314)
Q Consensus 243 ~~~vl~-----h~------------~d----~~~~l~~i~r~LkpGG~l~i~~~~~~ 278 (314)
.+--.. -+ .| .++++..+-.+|.|.|++++....++
T Consensus 116 fNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N 172 (209)
T KOG3191|consen 116 FNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN 172 (209)
T ss_pred ECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc
Confidence 642110 01 01 24678888889999999999886554
No 202
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.56 E-value=2.7e-07 Score=83.85 Aligned_cols=130 Identities=13% Similarity=0.130 Sum_probs=88.4
Q ss_pred CCCCCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHh-------CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCC
Q 021344 146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-------GTYSGVVALDFSENMLRQCYDFIKQDNTILT 218 (314)
Q Consensus 146 ~~~~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-------~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~ 218 (314)
+.++++....+++.+.+...++.+|+|.+||+|.++..+.+. ....+++|+|+++.++..++-++.-.+. ..
T Consensus 26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~-~~ 104 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI-DN 104 (311)
T ss_dssp GGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH-HC
T ss_pred ceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc-cc
Confidence 346788999999999998888889999999999999888763 2455899999999999998876655442 12
Q ss_pred CCeEEEEecCCCCCCC--CCchhhheecchh--c-c-----CCC-------------HHHHHHHHHhhcccCcEEEEEec
Q 021344 219 SNLALVRADVCRLPFA--SGFVDAVHAGAAL--H-C-----WPS-------------PSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 219 ~~v~~~~~d~~~lp~~--~~~fD~V~~~~vl--~-h-----~~d-------------~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
.+..+..+|....+.. .+.||+|+++--+ . + ..+ ...++..+.+.||+||++.+..+
T Consensus 105 ~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 105 SNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp BGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 3456888887655433 4689999984221 1 0 000 12588999999999999888775
Q ss_pred c
Q 021344 276 L 276 (314)
Q Consensus 276 ~ 276 (314)
.
T Consensus 185 ~ 185 (311)
T PF02384_consen 185 N 185 (311)
T ss_dssp H
T ss_pred c
Confidence 4
No 203
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.55 E-value=9.6e-07 Score=80.04 Aligned_cols=130 Identities=19% Similarity=0.267 Sum_probs=101.7
Q ss_pred HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (314)
Q Consensus 154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~ 233 (314)
+...+.+.... |.+|||.=+|.|.|+..+++.+.- +|+++|++|.+++..+++++.++. ...+..+++|....+.
T Consensus 178 ER~Rva~~v~~--GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v--~~~v~~i~gD~rev~~ 252 (341)
T COG2520 178 ERARVAELVKE--GETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKV--EGRVEPILGDAREVAP 252 (341)
T ss_pred HHHHHHhhhcC--CCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCc--cceeeEEeccHHHhhh
Confidence 33455555544 889999999999999999999863 499999999999999999999883 4559999999988775
Q ss_pred CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccCCCCCccchHHHHHH
Q 021344 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLREV 292 (314)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~~~~~~~~~~~l~~~ 292 (314)
.-+.||-|++... .+...++....+.+++||++...+.........+..+.++..
T Consensus 253 ~~~~aDrIim~~p----~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~ 307 (341)
T COG2520 253 ELGVADRIIMGLP----KSAHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSA 307 (341)
T ss_pred ccccCCEEEeCCC----CcchhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHH
Confidence 5578999998653 455678999999999999999988776544333333444443
No 204
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=1.4e-06 Score=75.34 Aligned_cols=114 Identities=21% Similarity=0.404 Sum_probs=95.2
Q ss_pred HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (314)
Q Consensus 154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp 232 (314)
.+.++..++...+|.+||+-|.|+|.++.++++. ++..+++.+|+.+...+.|++-+++.+ ..+++++..-|+...-
T Consensus 93 Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg--i~~~vt~~hrDVc~~G 170 (314)
T KOG2915|consen 93 DIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG--IGDNVTVTHRDVCGSG 170 (314)
T ss_pred cHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC--CCcceEEEEeecccCC
Confidence 3557888999999999999999999999999887 566799999999999999999999998 4689999999997754
Q ss_pred CC--CCchhhheecchhccCCCHHHHHHHHHhhcccCc-EEEEEe
Q 021344 233 FA--SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG-VFVGTT 274 (314)
Q Consensus 233 ~~--~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG-~l~i~~ 274 (314)
|. +..+|.|+.. ++.|..++..+.++||.+| ++.-.+
T Consensus 171 F~~ks~~aDaVFLD-----lPaPw~AiPha~~~lk~~g~r~csFS 210 (314)
T KOG2915|consen 171 FLIKSLKADAVFLD-----LPAPWEAIPHAAKILKDEGGRLCSFS 210 (314)
T ss_pred ccccccccceEEEc-----CCChhhhhhhhHHHhhhcCceEEecc
Confidence 43 4567877764 6889889999999999876 444433
No 205
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.54 E-value=5.3e-07 Score=77.84 Aligned_cols=86 Identities=15% Similarity=0.228 Sum_probs=73.2
Q ss_pred HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (314)
Q Consensus 153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp 232 (314)
..++.+.+..+.++++.|||||.|||.++..+.+.+. +|+++|+++.++....++.+... .....+++.+|+...+
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k--kVvA~E~Dprmvael~krv~gtp--~~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK--KVVAVEIDPRMVAELEKRVQGTP--KSGKLQVLHGDFLKTD 120 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC--eEEEEecCcHHHHHHHHHhcCCC--ccceeeEEecccccCC
Confidence 3455666677788899999999999999999999987 99999999999999999887654 4578999999998876
Q ss_pred CCCCchhhheec
Q 021344 233 FASGFVDAVHAG 244 (314)
Q Consensus 233 ~~~~~fD~V~~~ 244 (314)
++ .||+++++
T Consensus 121 ~P--~fd~cVsN 130 (315)
T KOG0820|consen 121 LP--RFDGCVSN 130 (315)
T ss_pred Cc--ccceeecc
Confidence 54 68888873
No 206
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=6.7e-07 Score=78.00 Aligned_cols=86 Identities=15% Similarity=0.210 Sum_probs=72.1
Q ss_pred hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (314)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l 231 (314)
...++.+.+.....++..|||||+|.|.++..|.+.+. +|+++|+++.++...++.... ..+++++.+|+.+.
T Consensus 16 ~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~-----~~n~~vi~~DaLk~ 88 (259)
T COG0030 16 KNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAP-----YDNLTVINGDALKF 88 (259)
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhccc-----ccceEEEeCchhcC
Confidence 34566788888888889999999999999999999987 899999999999999997652 37899999999988
Q ss_pred CCCCC-chhhheec
Q 021344 232 PFASG-FVDAVHAG 244 (314)
Q Consensus 232 p~~~~-~fD~V~~~ 244 (314)
.++.- .++.|+++
T Consensus 89 d~~~l~~~~~vVaN 102 (259)
T COG0030 89 DFPSLAQPYKVVAN 102 (259)
T ss_pred cchhhcCCCEEEEc
Confidence 77642 46666654
No 207
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.51 E-value=5.7e-07 Score=79.71 Aligned_cols=102 Identities=20% Similarity=0.320 Sum_probs=77.7
Q ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (314)
Q Consensus 165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~ 244 (314)
-.++.|||+|||+|-+....+..|. .+|+++|.|+ |.+.|++.++.+. ..++|.++.+-++++.++ ++.|+|++-
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA-~~vYAvEAS~-MAqyA~~Lv~~N~--~~~rItVI~GKiEdieLP-Ek~DviISE 250 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGA-KKVYAVEASE-MAQYARKLVASNN--LADRITVIPGKIEDIELP-EKVDVIISE 250 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCc-ceEEEEehhH-HHHHHHHHHhcCC--ccceEEEccCccccccCc-hhccEEEec
Confidence 3577899999999999999998884 5899999865 8899999998886 578999999999998775 579999873
Q ss_pred chhccCC-CH--HHHHHHHHhhcccCcEEEE
Q 021344 245 AALHCWP-SP--SNAVAEISRILRSGGVFVG 272 (314)
Q Consensus 245 ~vl~h~~-d~--~~~l~~i~r~LkpGG~l~i 272 (314)
- +.++- +. ....-..++.|||.|..+=
T Consensus 251 P-MG~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 251 P-MGYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred c-chhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 1 11111 11 1223345699999998754
No 208
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.50 E-value=1.7e-06 Score=68.89 Aligned_cols=104 Identities=29% Similarity=0.429 Sum_probs=75.4
Q ss_pred EEEEcCcccHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC--CCCCC-Cchhhheecc
Q 021344 170 LVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR--LPFAS-GFVDAVHAGA 245 (314)
Q Consensus 170 iLDiGcG~G~~~~~l~~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~--lp~~~-~~fD~V~~~~ 245 (314)
++|+|||+|... .+...... ..++|+|+++.++..++..... . ....+.+..+|... +++.. ..||++ ...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~ 126 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-A--GLGLVDFVVADALGGVLPFEDSASFDLV-ISL 126 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-c--CCCceEEEEeccccCCCCCCCCCceeEE-eee
Confidence 999999999965 33333222 3799999999998885554432 2 01116888888876 77776 489999 554
Q ss_pred hhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344 246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (314)
Q Consensus 246 vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~ 278 (314)
...|..++...+.++.+.|+|+|.+++......
T Consensus 127 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 127 LVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred eehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 444444488999999999999999999887653
No 209
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=5.1e-07 Score=85.02 Aligned_cols=110 Identities=18% Similarity=0.321 Sum_probs=89.6
Q ss_pred chHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344 151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (314)
Q Consensus 151 ~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~ 230 (314)
.+.+.+.+.+++...++.++||+=||.|.|+..+++... +|+|+|+++.+++.|+++++.+++ .|+.|..+++++
T Consensus 278 ~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~--~V~gvEi~~~aV~~A~~NA~~n~i---~N~~f~~~~ae~ 352 (432)
T COG2265 278 AEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK--KVHGVEISPEAVEAAQENAAANGI---DNVEFIAGDAEE 352 (432)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC--EEEEEecCHHHHHHHHHHHHHcCC---CcEEEEeCCHHH
Confidence 355667777888887888999999999999999998766 999999999999999999999884 679999999987
Q ss_pred CCCC---CCchhhheecchhccCCCH------HHHHHHHHhhcccCcEEEEEe
Q 021344 231 LPFA---SGFVDAVHAGAALHCWPSP------SNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 231 lp~~---~~~fD~V~~~~vl~h~~d~------~~~l~~i~r~LkpGG~l~i~~ 274 (314)
.... ...+|+|+. || ..+++.+.+ ++|-.+++++.
T Consensus 353 ~~~~~~~~~~~d~Vvv--------DPPR~G~~~~~lk~l~~-~~p~~IvYVSC 396 (432)
T COG2265 353 FTPAWWEGYKPDVVVV--------DPPRAGADREVLKQLAK-LKPKRIVYVSC 396 (432)
T ss_pred HhhhccccCCCCEEEE--------CCCCCCCCHHHHHHHHh-cCCCcEEEEeC
Confidence 6432 347899986 33 255665555 68888888877
No 210
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.49 E-value=2.5e-07 Score=77.82 Aligned_cols=90 Identities=18% Similarity=0.253 Sum_probs=71.4
Q ss_pred CeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC---CCchhhheec
Q 021344 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---SGFVDAVHAG 244 (314)
Q Consensus 168 ~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~---~~~fD~V~~~ 244 (314)
.++|||||=+......-. + ...|+.||+++ ..-.+.+.|+.+.|.+ +++||+|.++
T Consensus 53 lrlLEVGals~~N~~s~~--~-~fdvt~IDLns------------------~~~~I~qqDFm~rplp~~~~e~FdvIs~S 111 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTS--G-WFDVTRIDLNS------------------QHPGILQQDFMERPLPKNESEKFDVISLS 111 (219)
T ss_pred ceEEeecccCCCCccccc--C-ceeeEEeecCC------------------CCCCceeeccccCCCCCCcccceeEEEEE
Confidence 589999997655443322 2 23699999976 2345678899887764 6789999999
Q ss_pred chhccCCCHH---HHHHHHHhhcccCcE-----EEEEecccC
Q 021344 245 AALHCWPSPS---NAVAEISRILRSGGV-----FVGTTFLRY 278 (314)
Q Consensus 245 ~vl~h~~d~~---~~l~~i~r~LkpGG~-----l~i~~~~~~ 278 (314)
.||+++++|. ..++.+.+.|+|+|. |+++.+..-
T Consensus 112 LVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C 153 (219)
T PF11968_consen 112 LVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC 153 (219)
T ss_pred EEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH
Confidence 9999999996 689999999999999 999887663
No 211
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.46 E-value=2.7e-06 Score=70.40 Aligned_cols=126 Identities=17% Similarity=0.156 Sum_probs=94.2
Q ss_pred CCchHHHHHHHHHhcc--CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEe
Q 021344 149 PGPDEEFKMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226 (314)
Q Consensus 149 ~~~~~~~~~l~~~l~~--~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~ 226 (314)
|+.+...+.+..++.. -.+.++||+=+|+|.++.+...+|. .+++.+|.+..+....+++++..+ ...+..++..
T Consensus 24 PT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~--~~~~~~~~~~ 100 (187)
T COG0742 24 PTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALG--LEGEARVLRN 100 (187)
T ss_pred CCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhC--CccceEEEee
Confidence 5556667777777765 5789999999999999999999984 599999999999999999998866 3578899999
Q ss_pred cCCCC-CCCCC--chhhheecchhc-cCCCHHHHHHH--HHhhcccCcEEEEEeccc
Q 021344 227 DVCRL-PFASG--FVDAVHAGAALH-CWPSPSNAVAE--ISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 227 d~~~l-p~~~~--~fD~V~~~~vl~-h~~d~~~~l~~--i~r~LkpGG~l~i~~~~~ 277 (314)
|+... +.... .||+|+..=-++ -+.+....+.. -...|+|+|.+++.....
T Consensus 101 da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 101 DALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred cHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 98732 11222 499999854433 12222333333 446799999999988544
No 212
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.44 E-value=5.1e-07 Score=80.70 Aligned_cols=85 Identities=21% Similarity=0.293 Sum_probs=68.2
Q ss_pred HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-
Q 021344 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP- 232 (314)
Q Consensus 155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp- 232 (314)
.+.+.+.+...+++.+||.+||.|..+..+++..+ ..+|+|+|.++.+++.+++++.. . .++.++++|+.++.
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~----~ri~~i~~~f~~l~~ 82 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-F----GRFTLVHGNFSNLKE 82 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-C----CcEEEEeCCHHHHHH
Confidence 34556667767788999999999999999999864 57999999999999999998754 2 68999999987653
Q ss_pred -CCCC--chhhheec
Q 021344 233 -FASG--FVDAVHAG 244 (314)
Q Consensus 233 -~~~~--~fD~V~~~ 244 (314)
..++ ++|.|++.
T Consensus 83 ~l~~~~~~vDgIl~D 97 (296)
T PRK00050 83 VLAEGLGKVDGILLD 97 (296)
T ss_pred HHHcCCCccCEEEEC
Confidence 1122 68988874
No 213
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.44 E-value=1.1e-06 Score=78.25 Aligned_cols=110 Identities=17% Similarity=0.211 Sum_probs=79.5
Q ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-C--CCCCchhhhe
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P--FASGFVDAVH 242 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-p--~~~~~fD~V~ 242 (314)
.+++|||+=|=+|.|+.+++..| ..+|+.||.|..+++.++++++.++. ...+++++..|+.+. . -..++||+|+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lNg~-~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALNGL-DLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHTT--CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCC-CccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 47899999999999999988776 35899999999999999999998874 236899999998652 1 1246899999
Q ss_pred ec---ch---hccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344 243 AG---AA---LHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 243 ~~---~v---l~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
+. +. ..-..+-..++..+.++|+|||.+++.+.+.
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 72 11 0001133467888999999999998888554
No 214
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=3.7e-06 Score=77.66 Aligned_cols=129 Identities=20% Similarity=0.228 Sum_probs=98.3
Q ss_pred HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (314)
Q Consensus 153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~ 230 (314)
.........+.+.++.+|||..++.|.=+.+++....+ ..|+++|.++.-++..+++++..|. .++..+..|...
T Consensus 143 ~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~---~nv~~~~~d~~~ 219 (355)
T COG0144 143 EASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV---RNVIVVNKDARR 219 (355)
T ss_pred HHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC---CceEEEeccccc
Confidence 33445556788889999999999999988888887643 3579999999999999999999874 668888888765
Q ss_pred CC---CCCCchhhhee------cchhccCCCH----------------HHHHHHHHhhcccCcEEEEEecccCCCCCcc
Q 021344 231 LP---FASGFVDAVHA------GAALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLRYTSSTSL 284 (314)
Q Consensus 231 lp---~~~~~fD~V~~------~~vl~h~~d~----------------~~~l~~i~r~LkpGG~l~i~~~~~~~~~~~~ 284 (314)
.+ ...++||.|+. .+++..=++. .++|+...++|||||.|+.+|.+-.+..+..
T Consensus 220 ~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~ 298 (355)
T COG0144 220 LAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEE 298 (355)
T ss_pred ccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHH
Confidence 54 22235999986 3445332221 2689999999999999999998876655543
No 215
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.40 E-value=1.7e-06 Score=73.51 Aligned_cols=101 Identities=17% Similarity=0.145 Sum_probs=82.6
Q ss_pred CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecch
Q 021344 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA 246 (314)
Q Consensus 167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~v 246 (314)
+.+++|||+|.|.=+..++-..++.+++-+|....-+...++..++-++ .|++++++.+++..-....||+|++..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L---~nv~i~~~RaE~~~~~~~~~D~vtsRAv 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL---ENVEIVHGRAEEFGQEKKQYDVVTSRAV 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC---CCeEEehhhHhhcccccccCcEEEeehc
Confidence 5799999999999999988778888999999999988888888877764 7899999999887532212999999775
Q ss_pred hccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 247 LHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 247 l~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
.+...++.-+...+|+||.++..-
T Consensus 145 ----a~L~~l~e~~~pllk~~g~~~~~k 168 (215)
T COG0357 145 ----ASLNVLLELCLPLLKVGGGFLAYK 168 (215)
T ss_pred ----cchHHHHHHHHHhcccCCcchhhh
Confidence 455666777888999999876544
No 216
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.38 E-value=3.3e-06 Score=75.24 Aligned_cols=114 Identities=18% Similarity=0.116 Sum_probs=74.6
Q ss_pred HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCC--CCCC
Q 021344 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC--RLPF 233 (314)
Q Consensus 157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~--~lp~ 233 (314)
.+...++.-.+.+|||+|+|.|..+..+.+..+ ..+++++|.|+.+++.++..+..... ....... .+.. ..++
T Consensus 24 El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~--~~~~~~~-~~~~~~~~~~ 100 (274)
T PF09243_consen 24 ELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN--NRNAEWR-RVLYRDFLPF 100 (274)
T ss_pred HHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc--cccchhh-hhhhcccccC
Confidence 444444445677999999999988777766533 34799999999999999997765431 1111111 1111 1222
Q ss_pred CCCchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEeccc
Q 021344 234 ASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
. ..|+|++.++|..+++. ..+++.+.+.+++ .|+++++..
T Consensus 101 ~--~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt 142 (274)
T PF09243_consen 101 P--PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGT 142 (274)
T ss_pred C--CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCC
Confidence 2 34999999999999882 2455555555544 888888654
No 217
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.37 E-value=1.3e-06 Score=74.25 Aligned_cols=116 Identities=15% Similarity=0.187 Sum_probs=69.1
Q ss_pred HHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh-------cCCCCCCCeEEEEecC
Q 021344 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ-------DNTILTSNLALVRADV 228 (314)
Q Consensus 156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~-------~~~~~~~~v~~~~~d~ 228 (314)
..+.+.++..++..++|+|||.|....+++......+++|||+.+...+.|+...+. .+. ...++++..+|+
T Consensus 32 ~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~-~~~~v~l~~gdf 110 (205)
T PF08123_consen 32 SKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGK-RPGKVELIHGDF 110 (205)
T ss_dssp HHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB----EEEEECS-T
T ss_pred HHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc-ccccceeeccCc
Confidence 345556777788999999999999888777665455799999999888777653322 221 246788899998
Q ss_pred CCCCCCC---CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEE
Q 021344 229 CRLPFAS---GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGT 273 (314)
Q Consensus 229 ~~lp~~~---~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~ 273 (314)
.+.++.. ...|+|+++...- -++....|.++...||+|.+++..
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEES
T ss_pred cccHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEEC
Confidence 7644211 2468999876532 123345677778889998887643
No 218
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.36 E-value=9.8e-06 Score=73.42 Aligned_cols=110 Identities=15% Similarity=0.086 Sum_probs=77.1
Q ss_pred CCCeEEEEcCcccHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC----CCC--CC
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----LPF--AS 235 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~----~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~----lp~--~~ 235 (314)
++..++|+|||+|.=+..|.+. +....++++|+|..+++.+.+++..... ....+.-+++|+.+ ++- ..
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~-p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF-SHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC-CCeEEEEEEecHHHHHhhccccccc
Confidence 4668999999999865554443 3345799999999999999999882221 12344558898855 221 12
Q ss_pred Cchhhhee-cchhccCCCHH--HHHHHHHh-hcccCcEEEEEecc
Q 021344 236 GFVDAVHA-GAALHCWPSPS--NAVAEISR-ILRSGGVFVGTTFL 276 (314)
Q Consensus 236 ~~fD~V~~-~~vl~h~~d~~--~~l~~i~r-~LkpGG~l~i~~~~ 276 (314)
....+++. ..+|.+++..+ .+|+++++ .|+|||.+++..-.
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~ 199 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDG 199 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCC
Confidence 23555554 45788887654 78999999 99999998885533
No 219
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.35 E-value=4.7e-07 Score=73.64 Aligned_cols=72 Identities=22% Similarity=0.308 Sum_probs=55.3
Q ss_pred eEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--CCCCc-hhhheec
Q 021344 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGF-VDAVHAG 244 (314)
Q Consensus 169 ~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--~~~~~-fD~V~~~ 244 (314)
.|+|+.||.|..+.++++.+. +|+++|+++..++.|+.+++..| ...+++++++|+.++. +.... ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYG--v~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYG--VADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT---GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 699999999999999999976 99999999999999999999987 4679999999987642 22222 8999973
No 220
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=98.35 E-value=3.1e-06 Score=70.06 Aligned_cols=103 Identities=21% Similarity=0.399 Sum_probs=76.0
Q ss_pred CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCC----CCCCCeEEEEecCCC-CC--CCCCchh
Q 021344 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT----ILTSNLALVRADVCR-LP--FASGFVD 239 (314)
Q Consensus 167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~----~~~~~v~~~~~d~~~-lp--~~~~~fD 239 (314)
...+.|||||.|.++..|+..+|+..++|+|+-....++.++++...+. +...|+.+...+... +| |..++.+
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 3569999999999999999999999999999999999998888877431 023566777766654 23 2233333
Q ss_pred hheecchhccCCCH-------------HHHHHHHHhhcccCcEEEEEe
Q 021344 240 AVHAGAALHCWPSP-------------SNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 240 ~V~~~~vl~h~~d~-------------~~~l~~i~r~LkpGG~l~i~~ 274 (314)
-. +..++|| ..++.+..-+|++||.++..+
T Consensus 141 km-----ff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 141 KM-----FFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred cc-----eeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 22 2334554 257899999999999999887
No 221
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.33 E-value=4e-06 Score=78.35 Aligned_cols=103 Identities=22% Similarity=0.405 Sum_probs=88.2
Q ss_pred eEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecchhc
Q 021344 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH 248 (314)
Q Consensus 169 ~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~ 248 (314)
++|-+|||.-.+...+.+.| ...++-+|+|+-.++....+.... ..-..+...|...+.|++++||+|+..+.++
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~----~~~~~~~~~d~~~l~fedESFdiVIdkGtlD 125 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKE----RPEMQMVEMDMDQLVFEDESFDIVIDKGTLD 125 (482)
T ss_pred eeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccC----CcceEEEEecchhccCCCcceeEEEecCccc
Confidence 89999999999999999887 468999999999988887765432 3678999999999999999999999999988
Q ss_pred cCCCH----------HHHHHHHHhhcccCcEEEEEecc
Q 021344 249 CWPSP----------SNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 249 h~~d~----------~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
++-.+ ...+.+++|+|++||+++..+..
T Consensus 126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352|consen 126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred cccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence 87422 24588999999999999888873
No 222
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.32 E-value=2.8e-07 Score=76.38 Aligned_cols=98 Identities=17% Similarity=0.151 Sum_probs=77.1
Q ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~ 245 (314)
.+.++||+|.|.|..+..++.... +|++.|.|..|....+++ +..++.. .+..-.+-+||+|.|.+
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fe--evyATElS~tMr~rL~kk----------~ynVl~~--~ew~~t~~k~dli~clN 177 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKKK----------NYNVLTE--IEWLQTDVKLDLILCLN 177 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHH--HHHHHHhhHHHHHHHhhc----------CCceeee--hhhhhcCceeehHHHHH
Confidence 457899999999999999988865 899999999998887762 2222221 11111234699999999
Q ss_pred hhccCCCHHHHHHHHHhhccc-CcEEEEEeccc
Q 021344 246 ALHCWPSPSNAVAEISRILRS-GGVFVGTTFLR 277 (314)
Q Consensus 246 vl~h~~d~~~~l~~i~r~Lkp-GG~l~i~~~~~ 277 (314)
+|..-.+|-++|+.|+.+|+| +|++++....+
T Consensus 178 lLDRc~~p~kLL~Di~~vl~psngrvivaLVLP 210 (288)
T KOG3987|consen 178 LLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLP 210 (288)
T ss_pred HHHhhcChHHHHHHHHHHhccCCCcEEEEEEec
Confidence 999889999999999999999 89988866544
No 223
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.27 E-value=6.8e-06 Score=80.09 Aligned_cols=95 Identities=13% Similarity=0.182 Sum_probs=65.3
Q ss_pred CCCCchHHHHHHHHHhccC-------CCCeEEEEcCcccHHHHHHHHhCC--------CCeEEEEeCCHHHHHHHHHHHH
Q 021344 147 GFPGPDEEFKMAQEYFKSA-------QGGLLVDVSCGSGLFSRKFAKSGT--------YSGVVALDFSENMLRQCYDFIK 211 (314)
Q Consensus 147 ~~~~~~~~~~~l~~~l~~~-------~~~~iLDiGcG~G~~~~~l~~~~~--------~~~v~giD~s~~~~~~a~~~~~ 211 (314)
.++++...++.+.+.+... ...+|||.|||+|.++..+.+... ...++|+|+++..+..++.++.
T Consensus 5 qfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~ 84 (524)
T TIGR02987 5 TFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLG 84 (524)
T ss_pred ccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHh
Confidence 3566777777777655321 345899999999999988877542 2578999999999999999877
Q ss_pred hcCCCCCCCeEEEEecCCCCC-----CCCCchhhheec
Q 021344 212 QDNTILTSNLALVRADVCRLP-----FASGFVDAVHAG 244 (314)
Q Consensus 212 ~~~~~~~~~v~~~~~d~~~lp-----~~~~~fD~V~~~ 244 (314)
..+ ...+.+...|..... -..+.||+|+.+
T Consensus 85 ~~~---~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgN 119 (524)
T TIGR02987 85 EFA---LLEINVINFNSLSYVLLNIESYLDLFDIVITN 119 (524)
T ss_pred hcC---CCCceeeecccccccccccccccCcccEEEeC
Confidence 653 123455555533211 112579999984
No 224
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.26 E-value=6.5e-06 Score=76.31 Aligned_cols=100 Identities=13% Similarity=0.196 Sum_probs=81.8
Q ss_pred CeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-CCCCchhhheecc
Q 021344 168 GLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHAGA 245 (314)
Q Consensus 168 ~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-~~~~~fD~V~~~~ 245 (314)
.+|||+.||+|..+..+++.. ...+|+++|+++.+++.++++++..+. .++.++++|+..+- ...++||+|...-
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~---~~~~v~~~Da~~~l~~~~~~fDvIdlDP 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV---ENIEVPNEDAANVLRYRNRKFHVIDIDP 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC---CcEEEEchhHHHHHHHhCCCCCEEEeCC
Confidence 589999999999999999873 235899999999999999999988763 46889999986542 1235799998743
Q ss_pred hhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 246 ALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 246 vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
+..+..+++.+.+.+++||+++++.
T Consensus 123 ----fGs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 ----FGTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred ----CCCcHHHHHHHHHhcccCCEEEEEe
Confidence 2456789999999999999999974
No 225
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.20 E-value=1.4e-05 Score=80.33 Aligned_cols=123 Identities=15% Similarity=0.091 Sum_probs=86.4
Q ss_pred chHHHHHHHHHhcc-CCCCeEEEEcCcccHHHHHHHHhCC----------------------------------------
Q 021344 151 PDEEFKMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGT---------------------------------------- 189 (314)
Q Consensus 151 ~~~~~~~l~~~l~~-~~~~~iLDiGcG~G~~~~~l~~~~~---------------------------------------- 189 (314)
.+..+..+...... .++..++|.+||+|.++.+.+....
T Consensus 174 ~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~ 253 (702)
T PRK11783 174 KENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA 253 (702)
T ss_pred cHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 34555555555544 4578999999999999988865310
Q ss_pred --CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC--CCchhhheecchhc-cCC---CHHHHHHHHH
Q 021344 190 --YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA--SGFVDAVHAGAALH-CWP---SPSNAVAEIS 261 (314)
Q Consensus 190 --~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~--~~~fD~V~~~~vl~-h~~---d~~~~l~~i~ 261 (314)
..+++|+|+++.+++.|++++...+ ....+.+.++|+.+++.+ .++||+|+++--.. .+. +...+.+++.
T Consensus 254 ~~~~~i~G~Did~~av~~A~~N~~~~g--~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg 331 (702)
T PRK11783 254 ELPSKFYGSDIDPRVIQAARKNARRAG--VAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLG 331 (702)
T ss_pred ccCceEEEEECCHHHHHHHHHHHHHcC--CCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHH
Confidence 1269999999999999999999987 346799999999887643 35799999863221 122 2234444444
Q ss_pred hhcc---cCcEEEEEec
Q 021344 262 RILR---SGGVFVGTTF 275 (314)
Q Consensus 262 r~Lk---pGG~l~i~~~ 275 (314)
+.+| +|+.+++.+.
T Consensus 332 ~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 332 RRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHHhCCCCeEEEEeC
Confidence 4444 8988888774
No 226
>PRK11827 hypothetical protein; Provisional
Probab=98.19 E-value=6.4e-07 Score=59.54 Aligned_cols=45 Identities=16% Similarity=0.383 Sum_probs=37.4
Q ss_pred CCeeeccCCCccchhcCCCCccccccccCceecCCCCccccCccceeeeecccC
Q 021344 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISG 111 (314)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~ 111 (314)
+++++||.|+++|..... .+.+.|..|+..|++++|++.++.+..
T Consensus 6 LeILaCP~ckg~L~~~~~---------~~~Lic~~~~laYPI~dgIPVlL~deA 50 (60)
T PRK11827 6 LEIIACPVCNGKLWYNQE---------KQELICKLDNLAFPLRDGIPVLLETEA 50 (60)
T ss_pred HhheECCCCCCcCeEcCC---------CCeEECCccCeeccccCCccccCHHHh
Confidence 578999999999875332 257999999999999999999987644
No 227
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.17 E-value=9.2e-06 Score=67.92 Aligned_cols=104 Identities=13% Similarity=0.225 Sum_probs=83.9
Q ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC--CCCCCchhhhe
Q 021344 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVH 242 (314)
Q Consensus 165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l--p~~~~~fD~V~ 242 (314)
.++++||.||-|.|-....+.++-+. +-+.+|..++.++..++..-. ...+|..+.+-.++. .++++.||.|+
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw~----ek~nViil~g~WeDvl~~L~d~~FDGI~ 174 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGWR----EKENVIILEGRWEDVLNTLPDKHFDGIY 174 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhcccc----cccceEEEecchHhhhccccccCcceeE
Confidence 57899999999999988888877653 778899999998887774333 347888888877653 25688999999
Q ss_pred ecchhccCCCHHHHHHHHHhhcccCcEEEEE
Q 021344 243 AGAALHCWPSPSNAVAEISRILRSGGVFVGT 273 (314)
Q Consensus 243 ~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~ 273 (314)
-.---+|..|...+.+.+.|+|||+|++-..
T Consensus 175 yDTy~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 175 YDTYSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred eechhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 7666688888889999999999999998653
No 228
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=1.2e-05 Score=67.52 Aligned_cols=106 Identities=22% Similarity=0.237 Sum_probs=74.7
Q ss_pred HHHHhccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----
Q 021344 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---- 232 (314)
Q Consensus 158 l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp---- 232 (314)
..++--..++..|+|+|+..|.+++.+++.. ....|+|+|+.+-. ...++.++++|+..-+
T Consensus 37 ~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~--------------~~~~V~~iq~d~~~~~~~~~ 102 (205)
T COG0293 37 NEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK--------------PIPGVIFLQGDITDEDTLEK 102 (205)
T ss_pred HHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc--------------cCCCceEEeeeccCccHHHH
Confidence 3333334568899999999999999998884 34469999997732 2367999999997643
Q ss_pred ----CCCCchhhheecchh--------ccCCC---HHHHHHHHHhhcccCcEEEEEeccc
Q 021344 233 ----FASGFVDAVHAGAAL--------HCWPS---PSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 233 ----~~~~~fD~V~~~~vl--------~h~~d---~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
+....+|+|++...= +|... -..++.-+..+|+|||.+++-.+..
T Consensus 103 l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg 162 (205)
T COG0293 103 LLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG 162 (205)
T ss_pred HHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC
Confidence 334457999974331 22111 1245677778999999999988654
No 229
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=1.1e-06 Score=57.82 Aligned_cols=45 Identities=22% Similarity=0.566 Sum_probs=38.5
Q ss_pred CCeeeccCCCccchhcCCCCccccccccCceecCCCCccccCccceeeeecccC
Q 021344 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISG 111 (314)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~ 111 (314)
.++++||.|+++|...... +.+.|+.|+..|++++|++.+++...
T Consensus 6 LeiLaCP~~kg~L~~~~~~---------~~L~c~~~~~aYpI~dGIPvlL~~ea 50 (60)
T COG2835 6 LEILACPVCKGPLVYDEEK---------QELICPRCKLAYPIRDGIPVLLPDEA 50 (60)
T ss_pred heeeeccCcCCcceEeccC---------CEEEecccCceeecccCccccCchhh
Confidence 5789999999998765532 68999999999999999999997644
No 230
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.16 E-value=1.3e-06 Score=72.94 Aligned_cols=99 Identities=20% Similarity=0.267 Sum_probs=64.8
Q ss_pred CCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--------CC--
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FA-- 234 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--------~~-- 234 (314)
++.++||+||++|.|+..+.+++ ...+|+|+|+.+.. ...++..+++|+.... +.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~--------------~~~~~~~i~~d~~~~~~~~~i~~~~~~~ 88 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD--------------PLQNVSFIQGDITNPENIKDIRKLLPES 88 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG--------------S-TTEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc--------------cccceeeeecccchhhHHHhhhhhcccc
Confidence 45899999999999999999987 34599999998750 1245666677664311 11
Q ss_pred CCchhhheecchhccCCCH-----------HHHHHHHHhhcccCcEEEEEecccC
Q 021344 235 SGFVDAVHAGAALHCWPSP-----------SNAVAEISRILRSGGVFVGTTFLRY 278 (314)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~-----------~~~l~~i~r~LkpGG~l~i~~~~~~ 278 (314)
.+.||+|++..+.....+. ...+.-+.+.|+|||.+++-.+...
T Consensus 89 ~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~ 143 (181)
T PF01728_consen 89 GEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGP 143 (181)
T ss_dssp TCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSST
T ss_pred ccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCc
Confidence 2589999997743333221 1345556678999999999887643
No 231
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.14 E-value=3e-05 Score=71.00 Aligned_cols=121 Identities=15% Similarity=0.062 Sum_probs=89.4
Q ss_pred hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCC--------------------------------C-------e
Q 021344 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY--------------------------------S-------G 192 (314)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~--------------------------------~-------~ 192 (314)
+.+...|.......++..++|--||+|.++...+..+.+ . .
T Consensus 177 etLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~ 256 (381)
T COG0116 177 ETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPI 256 (381)
T ss_pred HHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccce
Confidence 444566666666666778999999999999999887642 1 2
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecchh-ccCCC---HH----HHHHHHHhhc
Q 021344 193 VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL-HCWPS---PS----NAVAEISRIL 264 (314)
Q Consensus 193 v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl-~h~~d---~~----~~l~~i~r~L 264 (314)
++|+|+++.+++.|+.+....| ..+.|.|.++|+..++-+-+.+|+|+++--- +-+.+ .. .+.+.+++.+
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AG--v~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~ 334 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAG--VGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLL 334 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcC--CCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHh
Confidence 7799999999999999999998 5788999999999886443689999995211 11112 22 3444555666
Q ss_pred ccCcEEEEEe
Q 021344 265 RSGGVFVGTT 274 (314)
Q Consensus 265 kpGG~l~i~~ 274 (314)
+--+.+++++
T Consensus 335 ~~ws~~v~tt 344 (381)
T COG0116 335 AGWSRYVFTT 344 (381)
T ss_pred cCCceEEEEc
Confidence 6667888877
No 232
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.14 E-value=8.2e-06 Score=67.34 Aligned_cols=116 Identities=17% Similarity=0.197 Sum_probs=86.7
Q ss_pred HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (314)
Q Consensus 154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~ 233 (314)
..+.+...-..-.+++|||+|+|+|......++.|. ..|+..|+.+...+..+-+.+.++ ..+.+...|.-.
T Consensus 67 lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~ang----v~i~~~~~d~~g--- 138 (218)
T COG3897 67 LARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAANG----VSILFTHADLIG--- 138 (218)
T ss_pred HHHHHhcCccccccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhcc----ceeEEeeccccC---
Confidence 344444444445789999999999999999999884 589999999999888888888776 788888888765
Q ss_pred CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
.+..||+|+...++..-+...+++.-..++...|-.+++-++.+
T Consensus 139 ~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 139 SPPAFDLLLAGDLFYNHTEADRLIPWKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred CCcceeEEEeeceecCchHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 35679999999887765556677774444444555566666544
No 233
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.13 E-value=2.9e-05 Score=62.15 Aligned_cols=103 Identities=19% Similarity=0.214 Sum_probs=67.8
Q ss_pred CCCCeEEEEcCcccHHHHHHHH-----hCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchh
Q 021344 165 AQGGLLVDVSCGSGLFSRKFAK-----SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD 239 (314)
Q Consensus 165 ~~~~~iLDiGcG~G~~~~~l~~-----~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD 239 (314)
.+...|+|+|||.|+++..++. . ++.+|+|+|.++..++.++++.+..+.....++.+..++...... ....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCe
Confidence 5678999999999999999998 4 567999999999999999998877542122456666666544322 34466
Q ss_pred hheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 240 ~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
+++.-|.-..+. ..+++...+ ++-..++..
T Consensus 102 ~~vgLHaCG~Ls--~~~l~~~~~---~~~~~l~~v 131 (141)
T PF13679_consen 102 ILVGLHACGDLS--DRALRLFIR---PNARFLVLV 131 (141)
T ss_pred EEEEeecccchH--HHHHHHHHH---cCCCEEEEc
Confidence 666544433221 234444444 554444433
No 234
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.12 E-value=3.4e-05 Score=67.54 Aligned_cols=116 Identities=22% Similarity=0.261 Sum_probs=73.0
Q ss_pred HHHhccC-CCCeEEEEcCcc---cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--
Q 021344 159 QEYFKSA-QGGLLVDVSCGS---GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-- 232 (314)
Q Consensus 159 ~~~l~~~-~~~~iLDiGcG~---G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-- 232 (314)
.+++... .-..+||||||- |....-..+..++.+|+-+|+++-.+..++..+.... .....++++|+.+..
T Consensus 60 Vr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~---~g~t~~v~aD~r~p~~i 136 (267)
T PF04672_consen 60 VRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP---RGRTAYVQADLRDPEAI 136 (267)
T ss_dssp HHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T---TSEEEEEE--TT-HHHH
T ss_pred HHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC---CccEEEEeCCCCCHHHH
Confidence 3444443 335799999996 4444444445778899999999999999999887653 123899999997632
Q ss_pred ----CCCCchh-----hheecchhccCCC---HHHHHHHHHhhcccCcEEEEEeccc
Q 021344 233 ----FASGFVD-----AVHAGAALHCWPS---PSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 233 ----~~~~~fD-----~V~~~~vl~h~~d---~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
-..+-+| .|++..+|||++| |..+++.+...|.||.+|+++....
T Consensus 137 L~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 137 LAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp HCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred hcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence 1112344 4778899999965 7799999999999999999988765
No 235
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.11 E-value=1.6e-05 Score=71.72 Aligned_cols=87 Identities=21% Similarity=0.244 Sum_probs=67.8
Q ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (314)
Q Consensus 165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~ 244 (314)
.++.++||+||++|.|+..+.++|. +|++||..+-. .. +. ...+|....+|........+.+|.|+|.
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~--~V~AVD~g~l~-~~----L~-----~~~~V~h~~~d~fr~~p~~~~vDwvVcD 277 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM--FVTAVDNGPMA-QS----LM-----DTGQVEHLRADGFKFRPPRKNVDWLVCD 277 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC--EEEEEechhcC-Hh----hh-----CCCCEEEEeccCcccCCCCCCCCEEEEe
Confidence 5788999999999999999999986 99999966522 11 11 2478999998876643235689999987
Q ss_pred chhccCCCHHHHHHHHHhhcccC
Q 021344 245 AALHCWPSPSNAVAEISRILRSG 267 (314)
Q Consensus 245 ~vl~h~~d~~~~l~~i~r~LkpG 267 (314)
.+ ..|..+.+-+.+.|..|
T Consensus 278 mv----e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 278 MV----EKPARVAELMAQWLVNG 296 (357)
T ss_pred cc----cCHHHHHHHHHHHHhcC
Confidence 65 56888888888888776
No 236
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.10 E-value=7.8e-06 Score=75.52 Aligned_cols=73 Identities=23% Similarity=0.467 Sum_probs=57.3
Q ss_pred hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (314)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~ 230 (314)
+.+++.+.++++..++ .+||+-||.|.++..+++... +|+|+|.++.+++.|+++++..++ .|++|+.+++++
T Consensus 183 ~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N~i---~n~~f~~~~~~~ 255 (352)
T PF05958_consen 183 EKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLNGI---DNVEFIRGDAED 255 (352)
T ss_dssp HHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHTT-----SEEEEE--SHH
T ss_pred HHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHcCC---CcceEEEeeccc
Confidence 4456677777777655 899999999999999999876 999999999999999999999875 799999887654
No 237
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.08 E-value=1.4e-05 Score=70.77 Aligned_cols=105 Identities=12% Similarity=0.233 Sum_probs=76.9
Q ss_pred hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (314)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l 231 (314)
....+.+.+.+...++..|||||+|.|.++..+.+.+. +++++|+++...+..++++.. ..+++++.+|+.++
T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~--~v~~vE~d~~~~~~L~~~~~~-----~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGK--RVIAVEIDPDLAKHLKERFAS-----NPNVEVINGDFLKW 88 (262)
T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSS--EEEEEESSHHHHHHHHHHCTT-----CSSEEEEES-TTTS
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccC--cceeecCcHhHHHHHHHHhhh-----cccceeeecchhcc
Confidence 44567788888887899999999999999999999985 999999999999999987652 37899999999887
Q ss_pred CCCC---CchhhheecchhccCCCHHHHHHHHHhhccc
Q 021344 232 PFAS---GFVDAVHAGAALHCWPSPSNAVAEISRILRS 266 (314)
Q Consensus 232 p~~~---~~fD~V~~~~vl~h~~d~~~~l~~i~r~Lkp 266 (314)
.... ..-..|+++--. + -...++.++...-+.
T Consensus 89 ~~~~~~~~~~~~vv~NlPy-~--is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 89 DLYDLLKNQPLLVVGNLPY-N--ISSPILRKLLELYRF 123 (262)
T ss_dssp CGGGHCSSSEEEEEEEETG-T--GHHHHHHHHHHHGGG
T ss_pred ccHHhhcCCceEEEEEecc-c--chHHHHHHHhhcccc
Confidence 6543 223344443221 1 124566666663344
No 238
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.06 E-value=1.4e-05 Score=71.59 Aligned_cols=124 Identities=19% Similarity=0.235 Sum_probs=94.4
Q ss_pred HHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-C-
Q 021344 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P- 232 (314)
Q Consensus 156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-p- 232 (314)
......+.+.++.+|||..+|.|.-+.+++.... ...+++.|+++..+...+++++..|. .++.....|.... +
T Consensus 75 ~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~---~~v~~~~~D~~~~~~~ 151 (283)
T PF01189_consen 75 QLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV---FNVIVINADARKLDPK 151 (283)
T ss_dssp HHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT----SSEEEEESHHHHHHHH
T ss_pred ccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC---ceEEEEeecccccccc
Confidence 3445567788899999999999998888887743 56999999999999999999998763 7888888887654 1
Q ss_pred CCCCchhhhee------cchhccCCCH----------------HHHHHHHHhhc----ccCcEEEEEecccCCCCC
Q 021344 233 FASGFVDAVHA------GAALHCWPSP----------------SNAVAEISRIL----RSGGVFVGTTFLRYTSST 282 (314)
Q Consensus 233 ~~~~~fD~V~~------~~vl~h~~d~----------------~~~l~~i~r~L----kpGG~l~i~~~~~~~~~~ 282 (314)
.....||.|+. .+++..-++. .++|+.+.+.+ ||||+++.+|-+-.+..+
T Consensus 152 ~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eEN 227 (283)
T PF01189_consen 152 KPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEEN 227 (283)
T ss_dssp HHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGT
T ss_pred ccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHH
Confidence 22335999986 2444444432 25799999999 999999999876654444
No 239
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.05 E-value=1.3e-05 Score=65.55 Aligned_cols=99 Identities=17% Similarity=0.190 Sum_probs=76.7
Q ss_pred CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecch
Q 021344 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA 246 (314)
Q Consensus 167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~v 246 (314)
.+.+.|+|.|+|-++...+.... +|++++.++...+.|.++++..+ ..+++++.+|+.+..|. ..|+|+|-..
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~--rViAiE~dPk~a~~a~eN~~v~g---~~n~evv~gDA~~y~fe--~ADvvicEml 105 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAE--RVIAIEKDPKRARLAEENLHVPG---DVNWEVVVGDARDYDFE--NADVVICEML 105 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhc--eEEEEecCcHHHHHhhhcCCCCC---CcceEEEeccccccccc--ccceeHHHHh
Confidence 46899999999999988887754 99999999999999999876654 58999999999998883 5799987422
Q ss_pred --hccCCCHHHHHHHHHhhcccCcEEEE
Q 021344 247 --LHCWPSPSNAVAEISRILRSGGVFVG 272 (314)
Q Consensus 247 --l~h~~d~~~~l~~i~r~LkpGG~l~i 272 (314)
.--......++..+...||-.+.++=
T Consensus 106 DTaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 106 DTALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred hHHhhcccccHHHHHHHHHhhcCCcccc
Confidence 00011223677777788888887764
No 240
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.00 E-value=7.7e-05 Score=63.24 Aligned_cols=108 Identities=18% Similarity=0.219 Sum_probs=74.7
Q ss_pred hccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---CCCCc
Q 021344 162 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGF 237 (314)
Q Consensus 162 l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp---~~~~~ 237 (314)
+...++.+||-+|.++|....++++. ++...|+++|+|+...+..-+..+.. .|+--+.+|+.... .--+.
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-----~NIiPIl~DAr~P~~Y~~lv~~ 143 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-----PNIIPILEDARHPEKYRMLVEM 143 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-----TTEEEEES-TTSGGGGTTTS--
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-----CceeeeeccCCChHHhhccccc
Confidence 45678899999999999999999987 55779999999997655554443332 78999999987521 11247
Q ss_pred hhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 238 fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
+|+|++.-. +-.+..-++.++...||+||.+++..-.
T Consensus 144 VDvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa 180 (229)
T PF01269_consen 144 VDVIFQDVA--QPDQARIAALNARHFLKPGGHLIISIKA 180 (229)
T ss_dssp EEEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred ccEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEEEec
Confidence 888887532 2223346788888999999999987644
No 241
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.98 E-value=9.8e-06 Score=70.90 Aligned_cols=110 Identities=19% Similarity=0.266 Sum_probs=72.6
Q ss_pred CCCeEEEEcCcccHHH-HHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC-------------CCC------------CC
Q 021344 166 QGGLLVDVSCGSGLFS-RKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-------------TIL------------TS 219 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~-~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~------------~~ 219 (314)
++.++||||||.--+- ..+.+.. .+++..|+++.-.+..++.++..+ ++. -.
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f--~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWF--EEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTE--EEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhh--cceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 4678999999985442 2222333 389999999999988877776644 000 01
Q ss_pred Ce-EEEEecCCCCC-CCC-----CchhhheecchhccCC-CH---HHHHHHHHhhcccCcEEEEEeccc
Q 021344 220 NL-ALVRADVCRLP-FAS-----GFVDAVHAGAALHCWP-SP---SNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 220 ~v-~~~~~d~~~lp-~~~-----~~fD~V~~~~vl~h~~-d~---~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
.| .++.+|+.+.+ +.. .+||+|++.+.++... |. ...++++.++|||||.|++.....
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 23 36778887643 322 2599999999998764 44 368999999999999999987654
No 242
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.91 E-value=1.1e-05 Score=67.71 Aligned_cols=92 Identities=17% Similarity=0.203 Sum_probs=69.7
Q ss_pred CCchHHHHHHHHHhccC-CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEec
Q 021344 149 PGPDEEFKMAQEYFKSA-QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD 227 (314)
Q Consensus 149 ~~~~~~~~~l~~~l~~~-~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d 227 (314)
..++.....+....... ....|+|.-||.|..+..++..++ .|++||+++.-+..|+++++-.|+ ..+|+|++||
T Consensus 76 vTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI--~~rItFI~GD 151 (263)
T KOG2730|consen 76 VTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGV--PDRITFICGD 151 (263)
T ss_pred eccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecC--CceeEEEech
Confidence 34555555555543322 456899999999999999999988 999999999999999999999985 4699999999
Q ss_pred CCCC----CCCCCchhhheec
Q 021344 228 VCRL----PFASGFVDAVHAG 244 (314)
Q Consensus 228 ~~~l----p~~~~~fD~V~~~ 244 (314)
+.++ .+....+|+|+.+
T Consensus 152 ~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 152 FLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred HHHHHHHHhhhhheeeeeecC
Confidence 8653 2333345566553
No 243
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.89 E-value=9.1e-05 Score=66.75 Aligned_cols=130 Identities=17% Similarity=0.220 Sum_probs=90.3
Q ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH--HHHhcC--CCCCCCeEEEEecCCCC-CCCCCchhh
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD--FIKQDN--TILTSNLALVRADVCRL-PFASGFVDA 240 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~--~~~~~~--~~~~~~v~~~~~d~~~l-p~~~~~fD~ 240 (314)
...++|-+|.|.|.-++++.+.-...+++-+|.+|.|++.+++ .+...+ .-..++++++..|+.+. .-..+.||+
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 3568999999999999999987546699999999999999983 333221 11356899999998663 233458999
Q ss_pred heecchhccCCCH----------HHHHHHHHhhcccCcEEEEEecccCCCCCcc--chHHHHHHHHhhhccc
Q 021344 241 VHAGAALHCWPSP----------SNAVAEISRILRSGGVFVGTTFLRYTSSTSL--TGRVLREVMLIRIKSH 300 (314)
Q Consensus 241 V~~~~vl~h~~d~----------~~~l~~i~r~LkpGG~l~i~~~~~~~~~~~~--~~~~l~~~~~~~~~~~ 300 (314)
|+.. ++|| ..+..-+.+.|+++|.+++..-+.......+ ....+++.-+...+.|
T Consensus 369 vIVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Pyh 435 (508)
T COG4262 369 VIVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYH 435 (508)
T ss_pred EEEe-----CCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcceeeeeE
Confidence 9875 3455 3678889999999999999775554333322 2234444444433333
No 244
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.88 E-value=6.2e-05 Score=60.04 Aligned_cols=59 Identities=25% Similarity=0.318 Sum_probs=50.7
Q ss_pred eEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (314)
Q Consensus 169 ~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~ 230 (314)
++||+|||.|.++..+++.++..+++++|+++.+.+.++++++..+. .++.++...+..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~---~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL---PNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC---CcEEEEEeeeeC
Confidence 48999999999999999998867899999999999999999887652 458888777654
No 245
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.87 E-value=7.7e-05 Score=66.96 Aligned_cols=88 Identities=10% Similarity=0.150 Sum_probs=70.0
Q ss_pred HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (314)
Q Consensus 153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp 232 (314)
.+.+.+.+.+...+++.++|.-+|.|..+..+++..+..+|+|+|.++.+++.++++++... .++.++++++.++.
T Consensus 7 Vll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~----~R~~~i~~nF~~l~ 82 (305)
T TIGR00006 7 VLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE----GRVVLIHDNFANFF 82 (305)
T ss_pred hhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC----CcEEEEeCCHHHHH
Confidence 34456666777778889999999999999999987545799999999999999999887643 68999999987643
Q ss_pred -----CCCCchhhheec
Q 021344 233 -----FASGFVDAVHAG 244 (314)
Q Consensus 233 -----~~~~~fD~V~~~ 244 (314)
...+++|.|++.
T Consensus 83 ~~l~~~~~~~vDgIl~D 99 (305)
T TIGR00006 83 EHLDELLVTKIDGILVD 99 (305)
T ss_pred HHHHhcCCCcccEEEEe
Confidence 123468887764
No 246
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.81 E-value=0.00024 Score=62.89 Aligned_cols=106 Identities=16% Similarity=0.193 Sum_probs=67.1
Q ss_pred CCeEEEEcCcc-cHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHH-hcCCCCCCCeEEEEecCCCCCCCCCchhhhee
Q 021344 167 GGLLVDVSCGS-GLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIK-QDNTILTSNLALVRADVCRLPFASGFVDAVHA 243 (314)
Q Consensus 167 ~~~iLDiGcG~-G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~-~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~ 243 (314)
+.+|+=||+|. -..+..+++. +.+..++++|+++.+++.+++.++ ..+ ...++.|+.+|....+..-..||+|+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~--L~~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG--LSKRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H--H-SSEEEEES-GGGG-GG----SEEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc--ccCCeEEEecchhccccccccCCEEEE
Confidence 35999999997 4445555543 555689999999999999999877 333 357899999999876654468999987
Q ss_pred cchhc-cCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 244 GAALH-CWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 244 ~~vl~-h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
..... --.+..+++.++.+.++||..+++-.
T Consensus 199 AalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 199 AALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp -TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 54432 11267799999999999999999875
No 247
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=3.4e-05 Score=72.50 Aligned_cols=77 Identities=16% Similarity=0.281 Sum_probs=66.6
Q ss_pred CCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 021344 149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV 228 (314)
Q Consensus 149 ~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~ 228 (314)
...+.....+.+++....+..+||+-||+|.++..+++... .|+|+++++++++.|+.+.+.+++ .|.+|+++-+
T Consensus 366 ~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~--~ViGvEi~~~aV~dA~~nA~~Ngi---sNa~Fi~gqa 440 (534)
T KOG2187|consen 366 SAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVK--RVIGVEISPDAVEDAEKNAQINGI---SNATFIVGQA 440 (534)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcccc--ceeeeecChhhcchhhhcchhcCc---cceeeeecch
Confidence 33455667788888888888999999999999999998865 999999999999999999999875 8999999965
Q ss_pred CC
Q 021344 229 CR 230 (314)
Q Consensus 229 ~~ 230 (314)
++
T Consensus 441 E~ 442 (534)
T KOG2187|consen 441 ED 442 (534)
T ss_pred hh
Confidence 55
No 248
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.72 E-value=0.00014 Score=64.34 Aligned_cols=111 Identities=22% Similarity=0.211 Sum_probs=75.5
Q ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHH---HhcC-------------------------C--
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI---KQDN-------------------------T-- 215 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~---~~~~-------------------------~-- 215 (314)
...+||--|||.|+++..++..|+ .+-|-|+|--|+-...=.+ +..+ .
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~--~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGF--KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcc--cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 456899999999999999999998 6667788766543222111 1111 0
Q ss_pred -------CCCCCeEEEEecCCCC---CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344 216 -------ILTSNLALVRADVCRL---PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (314)
Q Consensus 216 -------~~~~~v~~~~~d~~~l---p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~ 278 (314)
.....+....||+.+. +-..+.||+|+..+.+..-.|.-.+++.|..+|||||+++=..+..+
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlY 300 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLY 300 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceee
Confidence 0011223334555332 11234799999888888888889999999999999999987666553
No 249
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.69 E-value=0.00011 Score=60.57 Aligned_cols=117 Identities=19% Similarity=0.251 Sum_probs=75.3
Q ss_pred HHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHH-----HHHhcCCCCCCCeEEEEecCCCCCC
Q 021344 160 EYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYD-----FIKQDNTILTSNLALVRADVCRLPF 233 (314)
Q Consensus 160 ~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~-----~~~~~~~~~~~~v~~~~~d~~~lp~ 233 (314)
.+...+++.+|+|+=.|.|+|++.++.. ++...|+++=+.+...-..+. .+..+. ...|++.+..+...++
T Consensus 42 ~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~--~~aN~e~~~~~~~A~~- 118 (238)
T COG4798 42 AFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREP--VYANVEVIGKPLVALG- 118 (238)
T ss_pred EEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhh--hhhhhhhhCCcccccC-
Confidence 3556788999999999999999999887 555678877655431111000 011001 2345566665655555
Q ss_pred CCCchhhheecchhc-------cCCCHHHHHHHHHhhcccCcEEEEEecccCC
Q 021344 234 ASGFVDAVHAGAALH-------CWPSPSNAVAEISRILRSGGVFVGTTFLRYT 279 (314)
Q Consensus 234 ~~~~fD~V~~~~vl~-------h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~~ 279 (314)
+.+..|+++....-| |-....++.+++.+.|||||++++.+....+
T Consensus 119 ~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~p 171 (238)
T COG4798 119 APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADP 171 (238)
T ss_pred CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccC
Confidence 345566666532222 2223468899999999999999999987654
No 250
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=97.67 E-value=1.8e-05 Score=54.82 Aligned_cols=46 Identities=24% Similarity=0.517 Sum_probs=31.8
Q ss_pred CCCeeeccCCCccchhc---C----------------CCCccccccccCceecCCCCccccCccc
Q 021344 57 EGDLFSCPICYEPLIRK---G----------------PTGLTLGAIYRSGFKCRKCDKTYSSKDN 102 (314)
Q Consensus 57 ~~~~l~CP~C~~~l~~~---~----------------~~~~~~~~i~~~~l~C~~C~~~~~~~~g 102 (314)
..++++||.|+++|... . ....-..++.++.+.|++|++.|++++|
T Consensus 4 llniL~Cp~ck~pL~~~~l~~~~~~~~~~lp~~~~~~~~~l~~~~i~eg~L~Cp~c~r~YPI~dG 68 (68)
T PF03966_consen 4 LLNILACPVCKGPLDWEALVETAQLGLSELPKELPEDYHVLLEVEIVEGELICPECGREYPIRDG 68 (68)
T ss_dssp GCGTBB-TTTSSBEHHHHHHHHHHCCCCHCHHCHHCHCEHHCTEETTTTEEEETTTTEEEEEETT
T ss_pred HHhhhcCCCCCCcchHHHHHHHHHhCcccCCCCCccchhhhhcccccCCEEEcCCCCCEEeCCCC
Confidence 45789999999988000 0 0000124677899999999999999987
No 251
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.66 E-value=0.00044 Score=58.79 Aligned_cols=114 Identities=15% Similarity=0.128 Sum_probs=75.5
Q ss_pred EEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCc-hhhheecchhc
Q 021344 170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF-VDAVHAGAALH 248 (314)
Q Consensus 170 iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~-fD~V~~~~vl~ 248 (314)
|.||||--|++..+|.+.+...+++++|+++.-++.|++.++..+ ...++++..+|-.. ++..+. .|.|+..++=-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~--l~~~i~~rlgdGL~-~l~~~e~~d~ivIAGMGG 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYG--LEDRIEVRLGDGLE-VLKPGEDVDTIVIAGMGG 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT---TTTEEEEE-SGGG-G--GGG---EEEEEEE-H
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC--CcccEEEEECCccc-ccCCCCCCCEEEEecCCH
Confidence 689999999999999999877789999999999999999999988 46889999999543 222333 78777543300
Q ss_pred cCCCHHHHHHHHHhhcccCcEEEEEecccCCCCCccchHHHHHHHHhh
Q 021344 249 CWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLREVMLIR 296 (314)
Q Consensus 249 h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~~~~~~~~~~~l~~~~~~~ 296 (314)
. -...+|.+....++....|++.... ....+++|.+..
T Consensus 78 ~--lI~~ILe~~~~~~~~~~~lILqP~~--------~~~~LR~~L~~~ 115 (205)
T PF04816_consen 78 E--LIIEILEAGPEKLSSAKRLILQPNT--------HAYELRRWLYEN 115 (205)
T ss_dssp H--HHHHHHHHTGGGGTT--EEEEEESS---------HHHHHHHHHHT
T ss_pred H--HHHHHHHhhHHHhccCCeEEEeCCC--------ChHHHHHHHHHC
Confidence 0 1235566666666655667765522 355666666543
No 252
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=2.4e-05 Score=62.53 Aligned_cols=122 Identities=16% Similarity=0.077 Sum_probs=80.8
Q ss_pred HHHHHhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC--CCC
Q 021344 157 MAQEYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR--LPF 233 (314)
Q Consensus 157 ~l~~~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~--lp~ 233 (314)
.+.+....-.+.+||++|.|. |..+..++...+...|...|-++..++..++..-.+.......+..+..+... ...
T Consensus 20 ~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~ 99 (201)
T KOG3201|consen 20 TILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQ 99 (201)
T ss_pred HHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHH
Confidence 333333334567899999996 55666667777778999999999999888876543311011233233333221 112
Q ss_pred CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (314)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~ 278 (314)
...+||+|++...+..-..-..+++.|.+.|+|.|..++..+.+.
T Consensus 100 eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg 144 (201)
T KOG3201|consen 100 EQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRG 144 (201)
T ss_pred hhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCccc
Confidence 345899999976654333346789999999999999888886654
No 253
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.59 E-value=3.1e-05 Score=61.42 Aligned_cols=57 Identities=26% Similarity=0.219 Sum_probs=47.0
Q ss_pred eEEEEecCCCCCCCCCchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEeccc
Q 021344 221 LALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 221 v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
+.+++-.....+|.+++.|+|.+.+|+||+.-. ..+++++++.|||||+|-++.+..
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 444443345578999999999999999998744 478999999999999999998765
No 254
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.55 E-value=1.2e-05 Score=60.88 Aligned_cols=100 Identities=17% Similarity=0.236 Sum_probs=42.1
Q ss_pred EEEcCcccHHHHHHHHhCCC---CeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC--CCCCCchhhheecc
Q 021344 171 VDVSCGSGLFSRKFAKSGTY---SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVHAGA 245 (314)
Q Consensus 171 LDiGcG~G~~~~~l~~~~~~---~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l--p~~~~~fD~V~~~~ 245 (314)
||||+..|..+..+++.... .+++++|..+. .+.+++.++..+ ...+++++.++..+. .+..++||+|+...
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~--~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAG--LSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG 77 (106)
T ss_dssp --------------------------EEEESS-------------GG--G-BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcC--CCCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence 68999999988877765322 27999999995 233333333332 346799999998542 13356899999764
Q ss_pred hhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 246 ALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 246 vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
. |........+..+.+.|+|||++++-+
T Consensus 78 ~-H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 78 D-HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred C-CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 2 111223467888999999999998754
No 255
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.54 E-value=0.0013 Score=58.77 Aligned_cols=113 Identities=17% Similarity=0.133 Sum_probs=76.6
Q ss_pred HHhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC--CCC-----
Q 021344 160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CRL----- 231 (314)
Q Consensus 160 ~~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~--~~l----- 231 (314)
.....+.+.+||-+|+|. |..+...++.....+|+.+|+++..++.|++ +.. ..+....... ..+
T Consensus 163 r~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga------~~~~~~~~~~~~~~~~~~v~ 235 (354)
T KOG0024|consen 163 RRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGA------TVTDPSSHKSSPQELAELVE 235 (354)
T ss_pred hhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCC------eEEeeccccccHHHHHHHHH
Confidence 344567799999999998 8888888887656799999999999999998 321 1222221111 000
Q ss_pred -CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccCCCCCccc
Q 021344 232 -PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLT 285 (314)
Q Consensus 232 -p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~~~~~~~~ 285 (314)
-.....+|+.+.... .+..++.....++.||.+++..+.......|..
T Consensus 236 ~~~g~~~~d~~~dCsG------~~~~~~aai~a~r~gGt~vlvg~g~~~~~fpi~ 284 (354)
T KOG0024|consen 236 KALGKKQPDVTFDCSG------AEVTIRAAIKATRSGGTVVLVGMGAEEIQFPII 284 (354)
T ss_pred hhccccCCCeEEEccC------chHHHHHHHHHhccCCEEEEeccCCCccccChh
Confidence 022345787775443 245577778899999999999988765554443
No 256
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.47 E-value=0.00035 Score=55.27 Aligned_cols=83 Identities=22% Similarity=0.337 Sum_probs=59.0
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--CCCCchhhheecchhccCCC--------H---HHHHH
Q 021344 192 GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHAGAALHCWPS--------P---SNAVA 258 (314)
Q Consensus 192 ~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--~~~~~fD~V~~~~vl~h~~d--------~---~~~l~ 258 (314)
+|+|+|+-+.+++..++++++.+ ...+++++..+=+.+. .+.+++|+|+.+ |-++|. + ...++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~--~~~~v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG--LEDRVTLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT---GSGEEEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcC--CCCcEEEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHHHH
Confidence 58999999999999999999987 3468999998876654 223478888875 344442 2 26788
Q ss_pred HHHhhcccCcEEEEEecccC
Q 021344 259 EISRILRSGGVFVGTTFLRY 278 (314)
Q Consensus 259 ~i~r~LkpGG~l~i~~~~~~ 278 (314)
.+.++|+|||++.+..|...
T Consensus 77 ~al~lL~~gG~i~iv~Y~GH 96 (140)
T PF06962_consen 77 AALELLKPGGIITIVVYPGH 96 (140)
T ss_dssp HHHHHEEEEEEEEEEE--ST
T ss_pred HHHHhhccCCEEEEEEeCCC
Confidence 89999999999999997654
No 257
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.00067 Score=58.05 Aligned_cols=98 Identities=20% Similarity=0.285 Sum_probs=69.9
Q ss_pred cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCe-EEEEecCCCCC---CCCCchh
Q 021344 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNL-ALVRADVCRLP---FASGFVD 239 (314)
Q Consensus 164 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v-~~~~~d~~~lp---~~~~~fD 239 (314)
..++..+||||+.||.|+.-+.++|. ..|+|+|..-+.+..--+ ...++ .+...|+..+. +. +..|
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql~~kLR--------~d~rV~~~E~tN~r~l~~~~~~-~~~d 146 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQLHWKLR--------NDPRVIVLERTNVRYLTPEDFT-EKPD 146 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcCC-cEEEEEEccCCccCHhHh--------cCCcEEEEecCChhhCCHHHcc-cCCC
Confidence 34688999999999999999999984 589999998876654333 12444 34445554432 22 2577
Q ss_pred hheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 240 ~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
++++.-.+- ....+|..+..+++++|-++...
T Consensus 147 ~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 147 LIVIDVSFI---SLKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred eEEEEeehh---hHHHHHHHHHHhcCCCceEEEEe
Confidence 888765543 34678999999999999877644
No 258
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.003 Score=52.74 Aligned_cols=106 Identities=18% Similarity=0.218 Sum_probs=78.7
Q ss_pred hccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---CCCCch
Q 021344 162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFV 238 (314)
Q Consensus 162 l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp---~~~~~f 238 (314)
++..++.+||=+|..+|....++++.-....++++|+|+...+..-...++. .|+--+.+|+.... .--+..
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R-----~Ni~PIL~DA~~P~~Y~~~Ve~V 146 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR-----PNIIPILEDARKPEKYRHLVEKV 146 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC-----CCceeeecccCCcHHhhhhcccc
Confidence 4567899999999999999999999865678999999998776666655543 68888889986521 112457
Q ss_pred hhheecchhccCCCH---HHHHHHHHhhcccCcEEEEEeccc
Q 021344 239 DAVHAGAALHCWPSP---SNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 239 D~V~~~~vl~h~~d~---~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
|+|+.. +.+| .-+..++...||+||.+++..=.+
T Consensus 147 Dviy~D-----VAQp~Qa~I~~~Na~~FLk~~G~~~i~iKAr 183 (231)
T COG1889 147 DVIYQD-----VAQPNQAEILADNAEFFLKKGGYVVIAIKAR 183 (231)
T ss_pred cEEEEe-----cCCchHHHHHHHHHHHhcccCCeEEEEEEee
Confidence 777753 3344 346788899999999877765433
No 259
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.37 E-value=0.00089 Score=55.04 Aligned_cols=101 Identities=17% Similarity=0.173 Sum_probs=67.0
Q ss_pred cCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEe-cCCCC--------CC
Q 021344 164 SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRL--------PF 233 (314)
Q Consensus 164 ~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~-d~~~l--------p~ 233 (314)
..++.+|||+||..|.+++-..++ +|+..|.|||+-.-. ...++.++++ |+.+. ..
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~--------------p~~Ga~~i~~~dvtdp~~~~ki~e~l 132 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE--------------PPEGATIIQGNDVTDPETYRKIFEAL 132 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc--------------CCCCcccccccccCCHHHHHHHHHhC
Confidence 356899999999999999988777 488899999984311 2345666666 55441 13
Q ss_pred CCCchhhheecch--------hccCCCH---HHHHHHHHhhcccCcEEEEEecccC
Q 021344 234 ASGFVDAVHAGAA--------LHCWPSP---SNAVAEISRILRSGGVFVGTTFLRY 278 (314)
Q Consensus 234 ~~~~fD~V~~~~v--------l~h~~d~---~~~l~~i~r~LkpGG~l~i~~~~~~ 278 (314)
++...|+|++... ..|.... ..++.-....++|+|.++.-.|...
T Consensus 133 p~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~ 188 (232)
T KOG4589|consen 133 PNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS 188 (232)
T ss_pred CCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence 4567888887432 2221111 1344445567889999999887653
No 260
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.34 E-value=0.0013 Score=60.59 Aligned_cols=119 Identities=17% Similarity=0.174 Sum_probs=86.9
Q ss_pred hccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---CCCCc
Q 021344 162 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGF 237 (314)
Q Consensus 162 l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp---~~~~~ 237 (314)
+.++++.+|||..+..|.=+.+++.. .-...+++.|.+...+...+.++...| ..+......|...+| ++. +
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG---v~ntiv~n~D~~ef~~~~~~~-~ 312 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG---VTNTIVSNYDGREFPEKEFPG-S 312 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC---CCceEEEccCcccccccccCc-c
Confidence 45788999999999998765555544 113389999999999999999999887 377778888887655 444 8
Q ss_pred hhhhee----cc--hhccCC----------------CHHHHHHHHHhhcccCcEEEEEecccCCCCCcc
Q 021344 238 VDAVHA----GA--ALHCWP----------------SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL 284 (314)
Q Consensus 238 fD~V~~----~~--vl~h~~----------------d~~~~l~~i~r~LkpGG~l~i~~~~~~~~~~~~ 284 (314)
||-|+. ++ ++.--. -..++|......+|+||+|+-+|.+-....+.+
T Consensus 313 fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~ 381 (460)
T KOG1122|consen 313 FDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEA 381 (460)
T ss_pred cceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHH
Confidence 999885 33 222110 013678888899999999999997765544443
No 261
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.30 E-value=0.0043 Score=59.93 Aligned_cols=145 Identities=17% Similarity=0.097 Sum_probs=100.8
Q ss_pred CCCCCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC----CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCe
Q 021344 146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT----YSGVVALDFSENMLRQCYDFIKQDNTILTSNL 221 (314)
Q Consensus 146 ~~~~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~----~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v 221 (314)
+.++++.+..+.+.+.+.+.+..+|+|..||+|.++....+... ...++|.|+++.....++.++--++.. .++
T Consensus 166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~--~~~ 243 (489)
T COG0286 166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE--GDA 243 (489)
T ss_pred CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC--ccc
Confidence 45788999999999999887788999999999998777766531 257999999999999999988887741 245
Q ss_pred EEEEecCCCCCC-----CCCchhhheecchh---ccCC---------------------CH-HHHHHHHHhhcccCcEEE
Q 021344 222 ALVRADVCRLPF-----ASGFVDAVHAGAAL---HCWP---------------------SP-SNAVAEISRILRSGGVFV 271 (314)
Q Consensus 222 ~~~~~d~~~lp~-----~~~~fD~V~~~~vl---~h~~---------------------d~-~~~l~~i~r~LkpGG~l~ 271 (314)
....+|...-|. ..+.||+|+++--+ .+.. .. ..+++.+...|+|||+..
T Consensus 244 ~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aa 323 (489)
T COG0286 244 NIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAA 323 (489)
T ss_pred cccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEE
Confidence 666666544442 23569988874221 1110 01 478999999999999777
Q ss_pred EEecccCCCCCccchHHHHHHH
Q 021344 272 GTTFLRYTSSTSLTGRVLREVM 293 (314)
Q Consensus 272 i~~~~~~~~~~~~~~~~l~~~~ 293 (314)
+..+........ ....+++..
T Consensus 324 ivl~~gvlfr~~-~e~~IR~~l 344 (489)
T COG0286 324 IVLPDGVLFRGG-AEKDIRKDL 344 (489)
T ss_pred EEecCCcCcCCC-chHHHHHHH
Confidence 776554322222 244444444
No 262
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.28 E-value=0.0027 Score=53.77 Aligned_cols=113 Identities=13% Similarity=0.130 Sum_probs=81.1
Q ss_pred HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (314)
Q Consensus 154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~ 233 (314)
....+.++++. +.++.||||-.|++..++.+.++...+++.|+++.-++.|.+++...+ ...+++...+|... ++
T Consensus 6 RL~~va~~V~~--~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~--l~~~i~vr~~dgl~-~l 80 (226)
T COG2384 6 RLTTVANLVKQ--GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN--LSERIDVRLGDGLA-VL 80 (226)
T ss_pred HHHHHHHHHHc--CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC--CcceEEEeccCCcc-cc
Confidence 34455666655 455999999999999999999988899999999999999999999988 56888888888743 33
Q ss_pred C-CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEE
Q 021344 234 A-SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGT 273 (314)
Q Consensus 234 ~-~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~ 273 (314)
. ++.+|+|+..+.=. .-...+|++-.+.|+.==++++.
T Consensus 81 ~~~d~~d~ivIAGMGG--~lI~~ILee~~~~l~~~~rlILQ 119 (226)
T COG2384 81 ELEDEIDVIVIAGMGG--TLIREILEEGKEKLKGVERLILQ 119 (226)
T ss_pred CccCCcCEEEEeCCcH--HHHHHHHHHhhhhhcCcceEEEC
Confidence 3 34799887643200 01234566655655533345553
No 263
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.24 E-value=0.00066 Score=57.30 Aligned_cols=112 Identities=10% Similarity=0.130 Sum_probs=56.3
Q ss_pred HhccCCCCeEEEEcCcccHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC---
Q 021344 161 YFKSAQGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF--- 233 (314)
Q Consensus 161 ~l~~~~~~~iLDiGcG~G~~~~~l~~~----~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~--- 233 (314)
.+-..++..|+|+|.-.|..+..+++. +...+|+|+|++...... +..+.+. ...+|++++||..+...
T Consensus 27 li~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp--~~~rI~~i~Gds~d~~~~~~ 102 (206)
T PF04989_consen 27 LIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHP--MSPRITFIQGDSIDPEIVDQ 102 (206)
T ss_dssp HHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG------TTEEEEES-SSSTHHHHT
T ss_pred HHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhcc--ccCceEEEECCCCCHHHHHH
Confidence 333345679999999998877666543 356799999996433211 1222222 23799999999865321
Q ss_pred -C--CCchhhhe-ecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 234 -A--SGFVDAVH-AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 234 -~--~~~fD~V~-~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
. ....+-++ +-.+-|...+..+.|+....++++|+++++.+..
T Consensus 103 v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 103 VRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp SGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred HHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEecc
Confidence 0 11122222 2223333345567888899999999999997643
No 264
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.19 E-value=0.00095 Score=57.78 Aligned_cols=81 Identities=14% Similarity=0.168 Sum_probs=60.9
Q ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~ 245 (314)
+..+|+|||||.=-++.......++..++|+|++..+++.....+...+ .+.++...|+..-+ +....|+.+..=
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~----~~~~~~v~Dl~~~~-~~~~~DlaLllK 179 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG----VPHDARVRDLLSDP-PKEPADLALLLK 179 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-----CEEEEEE-TTTSH-TTSEESEEEEET
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC----CCcceeEeeeeccC-CCCCcchhhHHH
Confidence 3789999999998888877777667799999999999999999888765 67888888987654 356789999877
Q ss_pred hhccCC
Q 021344 246 ALHCWP 251 (314)
Q Consensus 246 vl~h~~ 251 (314)
+++.+.
T Consensus 180 ~lp~le 185 (251)
T PF07091_consen 180 TLPCLE 185 (251)
T ss_dssp -HHHHH
T ss_pred HHHHHH
Confidence 666543
No 265
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.0022 Score=50.72 Aligned_cols=118 Identities=15% Similarity=0.169 Sum_probs=82.8
Q ss_pred CCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 021344 149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV 228 (314)
Q Consensus 149 ~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~ 228 (314)
+...+.++.+..++...+.++.+|+|+|.|+...+.++.+ -...+|+|+++-.+.+++-..-.++ ......|..-|+
T Consensus 55 pAtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g--~~k~trf~Rkdl 131 (199)
T KOG4058|consen 55 PATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAG--CAKSTRFRRKDL 131 (199)
T ss_pred CccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHh--cccchhhhhhhh
Confidence 4445667777888888777899999999999999999987 3489999999999888877666665 457788888888
Q ss_pred CCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 229 CRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 229 ~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
.+..+.+-.+ |+.+.+=.-++|. -.++..-+..|..++-.-
T Consensus 132 wK~dl~dy~~--vviFgaes~m~dL---e~KL~~E~p~nt~vvacR 172 (199)
T KOG4058|consen 132 WKVDLRDYRN--VVIFGAESVMPDL---EDKLRTELPANTRVVACR 172 (199)
T ss_pred hhccccccce--EEEeehHHHHhhh---HHHHHhhCcCCCeEEEEe
Confidence 8776655434 4443332223333 333444455666666544
No 266
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.13 E-value=0.0015 Score=58.50 Aligned_cols=92 Identities=14% Similarity=0.131 Sum_probs=51.7
Q ss_pred HHHHHHHHhccCC-----CCeEEEEcCcccHH-H-HHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc-CCCCCCCeEEEE
Q 021344 154 EFKMAQEYFKSAQ-----GGLLVDVSCGSGLF-S-RKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVR 225 (314)
Q Consensus 154 ~~~~l~~~l~~~~-----~~~iLDiGcG~G~~-~-~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~v~~~~ 225 (314)
.+..+.+++.... ..++||||+|.... . ......++ +++|.|+++..++.|+++++.+ + ...+|+++.
T Consensus 85 Yi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W--~fvaTdID~~sl~~A~~nv~~N~~--L~~~I~l~~ 160 (299)
T PF05971_consen 85 YIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGW--SFVATDIDPKSLESARENVERNPN--LESRIELRK 160 (299)
T ss_dssp HHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T---TTTEEEEE
T ss_pred HHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCC--eEEEecCCHHHHHHHHHHHHhccc--cccceEEEE
Confidence 3445555554322 35799999999743 2 22233344 9999999999999999999988 5 467888887
Q ss_pred ecCCC-----CCCCCCchhhheecchhcc
Q 021344 226 ADVCR-----LPFASGFVDAVHAGAALHC 249 (314)
Q Consensus 226 ~d~~~-----lp~~~~~fD~V~~~~vl~h 249 (314)
..-.. +...++.||+.+|+=-++.
T Consensus 161 ~~~~~~i~~~i~~~~e~~dftmCNPPFy~ 189 (299)
T PF05971_consen 161 QKNPDNIFDGIIQPNERFDFTMCNPPFYS 189 (299)
T ss_dssp --ST-SSTTTSTT--S-EEEEEE-----S
T ss_pred cCCccccchhhhcccceeeEEecCCcccc
Confidence 64322 1223468999999655543
No 267
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.13 E-value=0.0071 Score=55.08 Aligned_cols=99 Identities=19% Similarity=0.222 Sum_probs=68.6
Q ss_pred hccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEec-CCCCCCCCCchh
Q 021344 162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD-VCRLPFASGFVD 239 (314)
Q Consensus 162 l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d-~~~lp~~~~~fD 239 (314)
....++.+|+-+|+|. |..+.++++... .+|+++|.+++..+.|++.- .-.++... ....+.-.+.||
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lG---------Ad~~i~~~~~~~~~~~~~~~d 231 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLG---------ADHVINSSDSDALEAVKEIAD 231 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhC---------CcEEEEcCCchhhHHhHhhCc
Confidence 4567899999999883 567777887432 59999999999999999842 22333322 111111122388
Q ss_pred hheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344 240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 240 ~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
+|+..-. ...+....+.||+||.+++.....
T Consensus 232 ~ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 232 AIIDTVG-------PATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred EEEECCC-------hhhHHHHHHHHhcCCEEEEECCCC
Confidence 8876543 455888889999999999988663
No 268
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.09 E-value=0.00095 Score=63.01 Aligned_cols=97 Identities=23% Similarity=0.275 Sum_probs=66.8
Q ss_pred cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCH----HHHHHHHHHHHhcCCCCCCCeEEEEecC-CCCCCCCCch
Q 021344 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSE----NMLRQCYDFIKQDNTILTSNLALVRADV-CRLPFASGFV 238 (314)
Q Consensus 164 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~----~~~~~a~~~~~~~~~~~~~~v~~~~~d~-~~lp~~~~~f 238 (314)
...-..|+|...|.|.|+.+|.+.. |..+...+ +.+....+ .++--+..|. +.++.-+.+|
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~~----VWVMNVVP~~~~ntL~vIyd----------RGLIG~yhDWCE~fsTYPRTY 428 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDDP----VWVMNVVPVSGPNTLPVIYD----------RGLIGVYHDWCEAFSTYPRTY 428 (506)
T ss_pred ccceeeeeeecccccHHHHHhccCC----ceEEEecccCCCCcchhhhh----------cccchhccchhhccCCCCcch
Confidence 3344579999999999999998653 44444433 23333332 1222222333 3345456899
Q ss_pred hhheecchhccCCC---HHHHHHHHHhhcccCcEEEEEe
Q 021344 239 DAVHAGAALHCWPS---PSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 239 D~V~~~~vl~h~~d---~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
|+|++.++|.+..+ ...+|-|+.|+|+|||.++|.+
T Consensus 429 DLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 429 DLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred hheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 99999999887654 4678999999999999999987
No 269
>PRK10742 putative methyltransferase; Provisional
Probab=97.03 E-value=0.0028 Score=55.02 Aligned_cols=117 Identities=13% Similarity=-0.019 Sum_probs=80.4
Q ss_pred HHHHHHhccCCCC--eEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc------CCCCCCCeEEEEec
Q 021344 156 KMAQEYFKSAQGG--LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD------NTILTSNLALVRAD 227 (314)
Q Consensus 156 ~~l~~~l~~~~~~--~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------~~~~~~~v~~~~~d 227 (314)
+.+.+....+++. +|||.-+|.|..+..++..|. +|+++|-++......++.++.. +.....+++++.+|
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~--~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d 153 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence 3566667666666 899999999999999999986 7999999999988888877763 10001468889998
Q ss_pred CCCC-CCCCCchhhheecchhcc--------------------CCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 228 VCRL-PFASGFVDAVHAGAALHC--------------------WPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 228 ~~~l-p~~~~~fD~V~~~~vl~h--------------------~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
.... .-...+||+|++.=.+.| -++...+|++..++-+ -++++-.+.
T Consensus 154 a~~~L~~~~~~fDVVYlDPMfp~~~ksa~vkk~mr~~~~l~g~d~d~~~lL~~Al~~A~--kRVVVKrp~ 221 (250)
T PRK10742 154 SLTALTDITPRPQVVYLDPMFPHKQKSALVKKEMRVFQSLVGPDLDADGLLEPARLLAT--KRVVVKRPD 221 (250)
T ss_pred HHHHHhhCCCCCcEEEECCCCCCCccccchhhhHHHHHHhcCCCCChHHHHHHHHHhcC--ceEEEecCC
Confidence 7542 212347999997433322 1234456666666543 556665543
No 270
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.01 E-value=0.00083 Score=60.36 Aligned_cols=85 Identities=18% Similarity=0.305 Sum_probs=61.2
Q ss_pred HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--
Q 021344 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-- 232 (314)
Q Consensus 155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-- 232 (314)
.+.+.+.+...+++.++|.--|.|..+..+++..+..+++|+|-++.+++.++++++... .++.++.+++.++.
T Consensus 9 l~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~----~r~~~~~~~F~~l~~~ 84 (310)
T PF01795_consen 9 LKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFD----DRFIFIHGNFSNLDEY 84 (310)
T ss_dssp HHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCC----TTEEEEES-GGGHHHH
T ss_pred HHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhcc----ceEEEEeccHHHHHHH
Confidence 345566777788899999999999999999998777899999999999999998876543 78999999987653
Q ss_pred ---C-CCCchhhhee
Q 021344 233 ---F-ASGFVDAVHA 243 (314)
Q Consensus 233 ---~-~~~~fD~V~~ 243 (314)
. ...++|.|++
T Consensus 85 l~~~~~~~~~dgiL~ 99 (310)
T PF01795_consen 85 LKELNGINKVDGILF 99 (310)
T ss_dssp HHHTTTTS-EEEEEE
T ss_pred HHHccCCCccCEEEE
Confidence 2 2346777765
No 271
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.99 E-value=0.022 Score=49.21 Aligned_cols=101 Identities=15% Similarity=0.092 Sum_probs=58.9
Q ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-CCC-CCCchhhhee
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPF-ASGFVDAVHA 243 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-lp~-~~~~fD~V~~ 243 (314)
.+++||=+|=..- .+..++..+...+|+.+|+++..++..++..++.+ .+++.+..|+.+ +|- -.++||+++.
T Consensus 44 ~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~g----l~i~~~~~DlR~~LP~~~~~~fD~f~T 118 (243)
T PF01861_consen 44 EGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEG----LPIEAVHYDLRDPLPEELRGKFDVFFT 118 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT------EEEE---TTS---TTTSS-BSEEEE
T ss_pred cCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcC----CceEEEEecccccCCHHHhcCCCEEEe
Confidence 5789999984443 33344444555699999999999999999999987 459999999965 331 1478999997
Q ss_pred cchhccCCCHHHHHHHHHhhcccCc-EEEE
Q 021344 244 GAALHCWPSPSNAVAEISRILRSGG-VFVG 272 (314)
Q Consensus 244 ~~vl~h~~d~~~~l~~i~r~LkpGG-~l~i 272 (314)
.=. +...-..-++......||..| ..++
T Consensus 119 DPP-yT~~G~~LFlsRgi~~Lk~~g~~gy~ 147 (243)
T PF01861_consen 119 DPP-YTPEGLKLFLSRGIEALKGEGCAGYF 147 (243)
T ss_dssp ----SSHHHHHHHHHHHHHTB-STT-EEEE
T ss_pred CCC-CCHHHHHHHHHHHHHHhCCCCceEEE
Confidence 310 000011468888899998766 4433
No 272
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.92 E-value=0.0039 Score=56.22 Aligned_cols=112 Identities=15% Similarity=0.074 Sum_probs=73.5
Q ss_pred hccCCCCeEEEEcCcccHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC----CCCCCCCC
Q 021344 162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV----CRLPFASG 236 (314)
Q Consensus 162 l~~~~~~~iLDiGcG~G~~~~~l~~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~----~~lp~~~~ 236 (314)
.+.-...+|||+|.|.|.-+.++....|+ ..++.++.|+..-+........... ........|+ ..+|. ..
T Consensus 109 ~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t---~~td~r~s~vt~dRl~lp~-ad 184 (484)
T COG5459 109 VPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST---EKTDWRASDVTEDRLSLPA-AD 184 (484)
T ss_pred CCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc---ccCCCCCCccchhccCCCc-cc
Confidence 34445678999999999988888777664 3578888888776666655444321 2222223333 22332 34
Q ss_pred chhhheecchhccCCCH---HHHHHHHHhhcccCcEEEEEeccc
Q 021344 237 FVDAVHAGAALHCWPSP---SNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 237 ~fD~V~~~~vl~h~~d~---~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
.|++|+..+-|-|..+. ...++.+..++.|||.++|.+.+.
T Consensus 185 ~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 185 LYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred eeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 57777776655555443 347888999999999999999543
No 273
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.87 E-value=0.0059 Score=54.20 Aligned_cols=86 Identities=17% Similarity=0.285 Sum_probs=68.7
Q ss_pred HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (314)
Q Consensus 154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp 232 (314)
+.+...+.+...+++..+|.--|.|..+..+.+.++ ..+++|+|-++.+++.|++++...+ .++.++++++.++.
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~----~r~~~v~~~F~~l~ 86 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD----GRVTLVHGNFANLA 86 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC----CcEEEEeCcHHHHH
Confidence 445666778888899999999999999999999875 3469999999999999999988765 78999999876543
Q ss_pred -----CCCCchhhhee
Q 021344 233 -----FASGFVDAVHA 243 (314)
Q Consensus 233 -----~~~~~fD~V~~ 243 (314)
...+++|.|+.
T Consensus 87 ~~l~~~~i~~vDGiL~ 102 (314)
T COG0275 87 EALKELGIGKVDGILL 102 (314)
T ss_pred HHHHhcCCCceeEEEE
Confidence 22345666654
No 274
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.73 E-value=0.014 Score=56.35 Aligned_cols=101 Identities=22% Similarity=0.219 Sum_probs=69.0
Q ss_pred cCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-----------C
Q 021344 164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-----------L 231 (314)
Q Consensus 164 ~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-----------l 231 (314)
..++.+|+-+|+|. |..+...++.. +.+|+++|.++..++.+++. ..+++..|..+ +
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aesl----------GA~~v~i~~~e~~~~~~gya~~~ 230 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESM----------GAEFLELDFEEEGGSGDGYAKVM 230 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----------CCeEEEeccccccccccchhhhc
Confidence 34688999999998 77777777664 23899999999999988872 23333222211 0
Q ss_pred --C--------CCC--CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344 232 --P--------FAS--GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 232 --p--------~~~--~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
. +.+ +.+|+|+.......-+.|..+.++..+.+||||+++....
T Consensus 231 s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 231 SEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred chhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 0 011 3589998766544333454556999999999999887665
No 275
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.70 E-value=0.022 Score=52.68 Aligned_cols=100 Identities=25% Similarity=0.232 Sum_probs=70.3
Q ss_pred CCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC------CCCCCC-
Q 021344 165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR------LPFASG- 236 (314)
Q Consensus 165 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~------lp~~~~- 236 (314)
.++++|+-+|||. |.++..+++.....+|+++|.++..++.|++... ...+.....+ .....+
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g---------~~~~~~~~~~~~~~~~~~~t~g~ 237 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGG---------ADVVVNPSEDDAGAEILELTGGR 237 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCC---------CeEeecCccccHHHHHHHHhCCC
Confidence 3455899999999 8888888888666799999999999999988432 1222211111 011222
Q ss_pred chhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccCC
Q 021344 237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT 279 (314)
Q Consensus 237 ~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~~ 279 (314)
.+|+|+-.-. ....+..+.++++|||.+++.......
T Consensus 238 g~D~vie~~G------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 238 GADVVIEAVG------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred CCCEEEECCC------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 6898885433 234789999999999999988766543
No 276
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=96.66 E-value=0.0021 Score=51.70 Aligned_cols=100 Identities=14% Similarity=0.206 Sum_probs=65.3
Q ss_pred CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHH-HHHHHhcCCCCCCCe-EEEEecCCC-CCCCCCchhhhee
Q 021344 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQC-YDFIKQDNTILTSNL-ALVRADVCR-LPFASGFVDAVHA 243 (314)
Q Consensus 167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a-~~~~~~~~~~~~~~v-~~~~~d~~~-lp~~~~~fD~V~~ 243 (314)
+++.+-+|...-+.-......| ..+++.+|.++--++.- + +++ .+...|+.. ..--.++||++.+
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~G-A~~iltveyn~L~i~~~~~-----------dr~ssi~p~df~~~~~~y~~~fD~~as 69 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHG-AAKILTVEYNKLEIQEEFR-----------DRLSSILPVDFAKNWQKYAGSFDFAAS 69 (177)
T ss_pred CceEEEEecCCchhhHHHHHcC-CceEEEEeecccccCcccc-----------cccccccHHHHHHHHHHhhccchhhhe
Confidence 5678889988777666566666 35789998865322111 1 111 111112211 1112468999999
Q ss_pred cchhccCC-----CH------HHHHHHHHhhcccCcEEEEEecccC
Q 021344 244 GAALHCWP-----SP------SNAVAEISRILRSGGVFVGTTFLRY 278 (314)
Q Consensus 244 ~~vl~h~~-----d~------~~~l~~i~r~LkpGG~l~i~~~~~~ 278 (314)
.+++||+. || .+.+.++.++|||||.+++..+...
T Consensus 70 ~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 70 FSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred echhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 99999973 33 3678999999999999999997765
No 277
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.64 E-value=0.02 Score=52.17 Aligned_cols=119 Identities=19% Similarity=0.157 Sum_probs=85.5
Q ss_pred HhccCCCCeEEEEcCcccHHHHHHHHhCCCC----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----
Q 021344 161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYS----GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---- 232 (314)
Q Consensus 161 ~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~----~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp---- 232 (314)
.+...++.+|||..+..|.=+.++.+..... .|++-|.+...+.......+... ..++.+...|+...|
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~---~~~~~v~~~~~~~~p~~~~ 226 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP---SPNLLVTNHDASLFPNIYL 226 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC---Ccceeeecccceecccccc
Confidence 4567889999999999999887777765433 79999999998888888775543 355666666655443
Q ss_pred -----CCCCchhhheec------chhccCCCH-----------------HHHHHHHHhhcccCcEEEEEecccCCCCC
Q 021344 233 -----FASGFVDAVHAG------AALHCWPSP-----------------SNAVAEISRILRSGGVFVGTTFLRYTSST 282 (314)
Q Consensus 233 -----~~~~~fD~V~~~------~vl~h~~d~-----------------~~~l~~i~r~LkpGG~l~i~~~~~~~~~~ 282 (314)
.....||-|++. .++.+-++. ..+|..-.++||+||.++-+|-+-.+..+
T Consensus 227 ~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieN 304 (375)
T KOG2198|consen 227 KDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIEN 304 (375)
T ss_pred ccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhh
Confidence 123469988863 333333322 15788889999999999999988765544
No 278
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.58 E-value=0.021 Score=48.22 Aligned_cols=120 Identities=21% Similarity=0.150 Sum_probs=67.7
Q ss_pred HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHhcC------------------
Q 021344 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIKQDN------------------ 214 (314)
Q Consensus 155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~v~giD~s~~~~~~a~~~~~~~~------------------ 214 (314)
++....++....+-++.|-.||.|+++--+.-.. .-..|+|.|+++++++.|++++.--.
T Consensus 40 ~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~ 119 (246)
T PF11599_consen 40 FQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQY 119 (246)
T ss_dssp HHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHc
Confidence 3444445555566789999999999876554432 12379999999999999987765422
Q ss_pred ---------------------CCCCCCeEEEEecCCCCC-----CCCCchhhheecchhccCCCH---------HHHHHH
Q 021344 215 ---------------------TILTSNLALVRADVCRLP-----FASGFVDAVHAGAALHCWPSP---------SNAVAE 259 (314)
Q Consensus 215 ---------------------~~~~~~v~~~~~d~~~lp-----~~~~~fD~V~~~~vl~h~~d~---------~~~l~~ 259 (314)
.+......+.++|+.+.. -.....|+|+..----++.++ ..+|..
T Consensus 120 ~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~ 199 (246)
T PF11599_consen 120 GKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNS 199 (246)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHH
Confidence 112345778888887621 112236888875433333222 368999
Q ss_pred HHhhcccCcEEEEEe
Q 021344 260 ISRILRSGGVFVGTT 274 (314)
Q Consensus 260 i~r~LkpGG~l~i~~ 274 (314)
++.+|-.++++.+++
T Consensus 200 l~~vLp~~sVV~v~~ 214 (246)
T PF11599_consen 200 LAPVLPERSVVAVSD 214 (246)
T ss_dssp HHCCS-TT-EEEEEE
T ss_pred HHhhCCCCcEEEEec
Confidence 999995556666644
No 279
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.54 E-value=0.018 Score=49.48 Aligned_cols=106 Identities=21% Similarity=0.286 Sum_probs=72.1
Q ss_pred hccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---CCCCc
Q 021344 162 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGF 237 (314)
Q Consensus 162 l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp---~~~~~ 237 (314)
+..+++.+||-+|.++|....+..+. ++..-|+++|+|...=+..-...+. -.||--+.-|+.... ..-.-
T Consensus 152 ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk-----RtNiiPIiEDArhP~KYRmlVgm 226 (317)
T KOG1596|consen 152 IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK-----RTNIIPIIEDARHPAKYRMLVGM 226 (317)
T ss_pred eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc-----cCCceeeeccCCCchheeeeeee
Confidence 44578999999999999999998887 6777899999998543332222221 267877888886521 11235
Q ss_pred hhhheecchhccCCCHH---HHHHHHHhhcccCcEEEEEeccc
Q 021344 238 VDAVHAGAALHCWPSPS---NAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 238 fD~V~~~~vl~h~~d~~---~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
.|+|++. +..|+ .+.-+..-.||+||-++++.-..
T Consensus 227 VDvIFaD-----vaqpdq~RivaLNA~~FLk~gGhfvisikan 264 (317)
T KOG1596|consen 227 VDVIFAD-----VAQPDQARIVALNAQYFLKNGGHFVISIKAN 264 (317)
T ss_pred EEEEecc-----CCCchhhhhhhhhhhhhhccCCeEEEEEecc
Confidence 7777764 23343 33445677899999999876443
No 280
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.52 E-value=0.019 Score=50.07 Aligned_cols=111 Identities=16% Similarity=0.038 Sum_probs=70.8
Q ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCC---CCCCeEEEEecCCCCC---CCCCc-h
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI---LTSNLALVRADVCRLP---FASGF-V 238 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~---~~~~v~~~~~d~~~lp---~~~~~-f 238 (314)
...+||++|+|+|..+..++... ..+|+-.|..... .....+....... ....+.....+....+ +.... |
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~~~-~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-GAEVVLTDLPKVV-ENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh-cceeccCCchhhH-HHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence 45679999999997777777644 3488888875432 2222221111100 1123333333332211 22223 9
Q ss_pred hhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344 239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (314)
Q Consensus 239 D~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~ 278 (314)
|+|++..++.+-..+..++..+...|..+|.+++.+..+.
T Consensus 164 DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 164 DLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred cEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 9999999999888888899999999999998888886654
No 281
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.40 E-value=0.0098 Score=55.25 Aligned_cols=112 Identities=16% Similarity=0.166 Sum_probs=65.7
Q ss_pred CCeEEEEcCcccHHHHHHHH--------h-------CCCCeEEEEeCCHHHHHHHHHHHHhcC---------CC-CCCC-
Q 021344 167 GGLLVDVSCGSGLFSRKFAK--------S-------GTYSGVVALDFSENMLRQCYDFIKQDN---------TI-LTSN- 220 (314)
Q Consensus 167 ~~~iLDiGcG~G~~~~~l~~--------~-------~~~~~v~giD~s~~~~~~a~~~~~~~~---------~~-~~~~- 220 (314)
..+|+|+|||+|.++..+.. + .+..+|+.-|.-.+-....-+.+.... +. ...+
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 56899999999976644422 1 123567777764332222111111100 00 0011
Q ss_pred --eEEEEecCCCCCCCCCchhhheecchhccCCCH--------------------------------------HHHHHHH
Q 021344 221 --LALVRADVCRLPFASGFVDAVHAGAALHCWPSP--------------------------------------SNAVAEI 260 (314)
Q Consensus 221 --v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--------------------------------------~~~l~~i 260 (314)
+..+-+.+..--|+.++.+++++...+||+... ..+|+.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 122224444445789999999999999997631 1244445
Q ss_pred HhhcccCcEEEEEecccC
Q 021344 261 SRILRSGGVFVGTTFLRY 278 (314)
Q Consensus 261 ~r~LkpGG~l~i~~~~~~ 278 (314)
++-|+|||++++....+.
T Consensus 224 a~ELvpGG~mvl~~~Gr~ 241 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRT 241 (386)
T ss_pred HHHhccCcEEEEEEecCC
Confidence 567899999999998875
No 282
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.32 E-value=0.019 Score=50.74 Aligned_cols=105 Identities=13% Similarity=0.180 Sum_probs=80.5
Q ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-CCCCeEEEEecCCCC--CCCCCchhhh
Q 021344 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-LTSNLALVRADVCRL--PFASGFVDAV 241 (314)
Q Consensus 165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~-~~~~v~~~~~d~~~l--p~~~~~fD~V 241 (314)
.+.+++|-||.|.|.+.+...++-.-.++.-+|++.+.++..++.+...... ...++.+..||-..+ ....+.||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 4578999999999999999888854558899999999999998877763221 346889999986432 1336789999
Q ss_pred eecchhccCCCH---------HHHHHHHHhhcccCcEEEEEe
Q 021344 242 HAGAALHCWPSP---------SNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 242 ~~~~vl~h~~d~---------~~~l~~i~r~LkpGG~l~i~~ 274 (314)
+..- .|| ..++..+.+.||+||++++..
T Consensus 200 i~ds-----sdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 200 ITDS-----SDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEec-----CCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 8642 233 357888899999999998876
No 283
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.27 E-value=0.005 Score=46.04 Aligned_cols=33 Identities=24% Similarity=0.355 Sum_probs=28.6
Q ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCH
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSE 200 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~ 200 (314)
+....+|||||+|.+..-|.+.|. .-.|+|.-.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy--~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY--PGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC--Ccccccccc
Confidence 456799999999999999999987 888999743
No 284
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.27 E-value=0.046 Score=50.18 Aligned_cols=128 Identities=20% Similarity=0.110 Sum_probs=68.4
Q ss_pred CCCCeEEEEcCcccHHHHHHHHh--------C--------CCCeEEEEeCCHHHHHHH-------HHHHHhcCCCCCCCe
Q 021344 165 AQGGLLVDVSCGSGLFSRKFAKS--------G--------TYSGVVALDFSENMLRQC-------YDFIKQDNTILTSNL 221 (314)
Q Consensus 165 ~~~~~iLDiGcG~G~~~~~l~~~--------~--------~~~~v~giD~s~~~~~~a-------~~~~~~~~~~~~~~v 221 (314)
...-+|+|+||..|..+..+... . +..+|+--|.=.+-.... .+.....+ ..=+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~---~~f~ 91 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFR---NYFV 91 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTT---SEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCc---eEEE
Confidence 34568999999999987665432 1 123677777533211111 11111111 1223
Q ss_pred EEEEecCCCCCCCCCchhhheecchhccCCCH---------------------------------------HHHHHHHHh
Q 021344 222 ALVRADVCRLPFASGFVDAVHAGAALHCWPSP---------------------------------------SNAVAEISR 262 (314)
Q Consensus 222 ~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~---------------------------------------~~~l~~i~r 262 (314)
..+-+.+..--+++++.|++++...|||+... ..+|+.=++
T Consensus 92 ~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ 171 (334)
T PF03492_consen 92 SGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAE 171 (334)
T ss_dssp EEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44556776656789999999999999987521 124555557
Q ss_pred hcccCcEEEEEecccCCCC-----CccchHHHHHHHHh
Q 021344 263 ILRSGGVFVGTTFLRYTSS-----TSLTGRVLREVMLI 295 (314)
Q Consensus 263 ~LkpGG~l~i~~~~~~~~~-----~~~~~~~l~~~~~~ 295 (314)
-|+|||++++....+.... .....+.+...+.+
T Consensus 172 ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~d 209 (334)
T PF03492_consen 172 ELVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRD 209 (334)
T ss_dssp HEEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHH
T ss_pred eeccCcEEEEEEeeccccccccCCcchHHHHHHHHHHH
Confidence 7899999999998876521 12344556655544
No 285
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.24 E-value=0.011 Score=55.03 Aligned_cols=104 Identities=16% Similarity=0.170 Sum_probs=74.5
Q ss_pred CCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCC-CeEEEEecCCCCC-CCCCchhhhee
Q 021344 167 GGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTS-NLALVRADVCRLP-FASGFVDAVHA 243 (314)
Q Consensus 167 ~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~-~v~~~~~d~~~lp-~~~~~fD~V~~ 243 (314)
+.++||.=+|+|-=+...++. ....+|+.-|+|+++++..+++++.++. .. .+++.+.|+..+- ...+.||+|=.
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~--~~~~~~v~~~DAn~ll~~~~~~fD~IDl 127 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGL--EDERIEVSNMDANVLLYSRQERFDVIDL 127 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT---SGCCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccc--cCceEEEehhhHHHHhhhccccCCEEEe
Confidence 458999999999766666555 3345899999999999999999998884 33 6888888875532 24678999874
Q ss_pred cchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 244 GAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 244 ~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
.-+..|..+|+.+.+.+|.||.|.++...
T Consensus 128 ----DPfGSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 128 ----DPFGSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp ------SS--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred ----CCCCCccHhHHHHHHHhhcCCEEEEeccc
Confidence 33456889999999999999999997643
No 286
>PRK11524 putative methyltransferase; Provisional
Probab=96.19 E-value=0.021 Score=51.20 Aligned_cols=58 Identities=12% Similarity=0.126 Sum_probs=48.4
Q ss_pred hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh
Q 021344 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ 212 (314)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~ 212 (314)
.++.+.+..... .+|+.|||.=+|+|..+.+..+.+. +.+|+|+++..++.|++++..
T Consensus 195 ~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR--~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGR--KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCC--CEEEEeCCHHHHHHHHHHHHh
Confidence 455555555544 4689999999999999999998876 999999999999999998754
No 287
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.18 E-value=0.0096 Score=50.67 Aligned_cols=111 Identities=23% Similarity=0.286 Sum_probs=76.4
Q ss_pred CCeEEEEcCcccHHHHHHHHhCC---------CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-----
Q 021344 167 GGLLVDVSCGSGLFSRKFAKSGT---------YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----- 232 (314)
Q Consensus 167 ~~~iLDiGcG~G~~~~~l~~~~~---------~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp----- 232 (314)
-.+++|+....|.|++.+.++.. ...+++||+-+-+ .-..|.-+++|+....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--------------PI~GV~qlq~DIT~~stae~I 107 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--------------PIEGVIQLQGDITSASTAEAI 107 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------------ccCceEEeecccCCHhHHHHH
Confidence 35799999999999999887631 1239999985421 2367888999997642
Q ss_pred ---CCCCchhhheecch-----hccCCCH------HHHHHHHHhhcccCcEEEEEecccCCCCCccchHHHHHHH
Q 021344 233 ---FASGFVDAVHAGAA-----LHCWPSP------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLREVM 293 (314)
Q Consensus 233 ---~~~~~fD~V~~~~v-----l~h~~d~------~~~l~~i~r~LkpGG~l~i~~~~~~~~~~~~~~~~l~~~~ 293 (314)
|..++.|+|+|.++ +|.+..- ...|.-...+|||||.|+---+... ..+.....++.++
T Consensus 108 i~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~--~tslLysql~~ff 180 (294)
T KOG1099|consen 108 IEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGR--DTSLLYSQLRKFF 180 (294)
T ss_pred HHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccC--chHHHHHHHHHHh
Confidence 55678999999654 3433221 2456777789999999987665433 3355555555554
No 288
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.09 E-value=0.021 Score=48.77 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=42.7
Q ss_pred chHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 021344 151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD 208 (314)
Q Consensus 151 ~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~ 208 (314)
+.++++.+.+... .+++.|||.=||+|..+.+..+.+. +.+|+|+++...+.|++
T Consensus 177 P~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~R--~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 177 PVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELGR--RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcCC--eEEEEeCCHHHHHHhcC
Confidence 4566666666554 4689999999999999999999876 99999999999998874
No 289
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.09 E-value=0.064 Score=50.21 Aligned_cols=106 Identities=17% Similarity=0.206 Sum_probs=69.7
Q ss_pred HhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-C-----CC
Q 021344 161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L-----PF 233 (314)
Q Consensus 161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-l-----p~ 233 (314)
.....++.+||.+|+|. |..+..+++.....+++++|.++...+.+++.. ...++...-.+ . .+
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---------~~~vi~~~~~~~~~~~l~~~ 249 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---------GAETINFEEVDDVVEALREL 249 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---------CcEEEcCCcchHHHHHHHHH
Confidence 34456788999999988 888888888753346999999999988887731 12222211110 0 11
Q ss_pred -CCCchhhheecch-----------hccC----CCHHHHHHHHHhhcccCcEEEEEec
Q 021344 234 -ASGFVDAVHAGAA-----------LHCW----PSPSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 234 -~~~~fD~V~~~~v-----------l~h~----~d~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
....+|+|+-.-. +.|. .++...+.++.+.|+++|.+++...
T Consensus 250 ~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 250 TGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred cCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 1235888775321 1222 4556788999999999999988753
No 290
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.00 E-value=0.058 Score=49.53 Aligned_cols=100 Identities=17% Similarity=0.200 Sum_probs=62.5
Q ss_pred cCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCC-eEEEEecCCCCCCCCCchhhh
Q 021344 164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSN-LALVRADVCRLPFASGFVDAV 241 (314)
Q Consensus 164 ~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~-v~~~~~d~~~lp~~~~~fD~V 241 (314)
..++.+||-+|+|. |.++..+++.....+++++|.++..++.+++. + ... +.....++.+.....+.+|+|
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----G---a~~vi~~~~~~~~~~~~~~g~~D~v 239 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----G---ADKLVNPQNDDLDHYKAEKGYFDVS 239 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----C---CcEEecCCcccHHHHhccCCCCCEE
Confidence 34678999999876 77777777764334799999999988888762 1 011 110011111111112347777
Q ss_pred eecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 242 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 242 ~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
+-. ...+ ..++...+.|++||++++....
T Consensus 240 id~-----~G~~-~~~~~~~~~l~~~G~iv~~G~~ 268 (343)
T PRK09880 240 FEV-----SGHP-SSINTCLEVTRAKGVMVQVGMG 268 (343)
T ss_pred EEC-----CCCH-HHHHHHHHHhhcCCEEEEEccC
Confidence 643 2333 4578888999999999987643
No 291
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.96 E-value=0.045 Score=50.00 Aligned_cols=105 Identities=16% Similarity=0.208 Sum_probs=79.7
Q ss_pred CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC-CCchhhheecc
Q 021344 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAGA 245 (314)
Q Consensus 167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~-~~~fD~V~~~~ 245 (314)
..+|||.=+|+|-=+..++...+..+++.-|+|+.+++.++++++.+. ..+...+..|+..+-.. ...||+|=
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~---~~~~~v~n~DAN~lm~~~~~~fd~ID--- 126 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS---GEDAEVINKDANALLHELHRAFDVID--- 126 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC---cccceeecchHHHHHHhcCCCccEEe---
Confidence 678999999999887777777665689999999999999999998763 14555565666443211 25677775
Q ss_pred hhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344 246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (314)
Q Consensus 246 vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~ 278 (314)
|.=+..|..+++...+.++.||++-++-....
T Consensus 127 -iDPFGSPaPFlDaA~~s~~~~G~l~vTATD~a 158 (380)
T COG1867 127 -IDPFGSPAPFLDAALRSVRRGGLLCVTATDTA 158 (380)
T ss_pred -cCCCCCCchHHHHHHHHhhcCCEEEEEecccc
Confidence 33445788999999999999999988765443
No 292
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.93 E-value=0.022 Score=49.15 Aligned_cols=91 Identities=19% Similarity=0.140 Sum_probs=52.5
Q ss_pred HHHHHhccCCC--CeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH---HHhcCCC---CCCCeEEEEecC
Q 021344 157 MAQEYFKSAQG--GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF---IKQDNTI---LTSNLALVRADV 228 (314)
Q Consensus 157 ~l~~~l~~~~~--~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~---~~~~~~~---~~~~v~~~~~d~ 228 (314)
.+.+....+++ .+|||.-+|-|.-+.-++..|. +|+++|-|+-.....+.- ....... ...+++++.+|.
T Consensus 64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~--~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~ 141 (234)
T PF04445_consen 64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC--KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA 141 (234)
T ss_dssp HHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred HHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCC--eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence 45555655544 4899999999999988888775 999999999765555433 3222100 014899999998
Q ss_pred CC-CCCCCCchhhheecchhcc
Q 021344 229 CR-LPFASGFVDAVHAGAALHC 249 (314)
Q Consensus 229 ~~-lp~~~~~fD~V~~~~vl~h 249 (314)
.+ +..++++||+|+..=.+.|
T Consensus 142 ~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 142 LEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp CCHCCCHSS--SEEEE--S---
T ss_pred HHHHhhcCCCCCEEEECCCCCC
Confidence 66 4555789999998655544
No 293
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.93 E-value=0.042 Score=52.29 Aligned_cols=107 Identities=9% Similarity=0.177 Sum_probs=78.4
Q ss_pred CCeEEEEcCcccHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhe
Q 021344 167 GGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 242 (314)
Q Consensus 167 ~~~iLDiGcG~G~~~~~l~~~----~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~ 242 (314)
...|+-+|.|-|-+.....+. ....+++++|-+|+++...+.+- ... ...+|+++..|...++.+.++.|+++
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n-~~~--W~~~Vtii~~DMR~w~ap~eq~DI~V 444 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRN-FEC--WDNRVTIISSDMRKWNAPREQADIIV 444 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhc-hhh--hcCeeEEEeccccccCCchhhccchH
Confidence 346899999999876655443 23468999999999988887732 222 35789999999999885568899988
Q ss_pred ecchhccCCCH---HHHHHHHHhhcccCcEEEEEeccc
Q 021344 243 AGAALHCWPSP---SNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 243 ~~~vl~h~~d~---~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
+- .|.-+.|- ..-|..+.+.|||+|+.+=..+..
T Consensus 445 SE-LLGSFGDNELSPECLDG~q~fLkpdgIsIP~sYtS 481 (649)
T KOG0822|consen 445 SE-LLGSFGDNELSPECLDGAQKFLKPDGISIPSSYTS 481 (649)
T ss_pred HH-hhccccCccCCHHHHHHHHhhcCCCceEccchhhh
Confidence 62 23333332 356899999999999887666554
No 294
>PRK13699 putative methylase; Provisional
Probab=95.85 E-value=0.044 Score=47.45 Aligned_cols=60 Identities=18% Similarity=0.228 Sum_probs=49.0
Q ss_pred chHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc
Q 021344 151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD 213 (314)
Q Consensus 151 ~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~ 213 (314)
+.++.+.+.+... .+++.|||.=||+|..+.+..+.+. +++|+|+++...+.+.++++..
T Consensus 149 P~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r--~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 149 PVTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGR--RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred cHHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCC--CEEEEecCHHHHHHHHHHHHHH
Confidence 4555555555444 3688999999999999999988876 9999999999999999988763
No 295
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=95.52 E-value=0.0069 Score=36.40 Aligned_cols=35 Identities=20% Similarity=0.551 Sum_probs=23.5
Q ss_pred eeeccCCCccchhcCCCCccccccccCceecCCCCcccc
Q 021344 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (314)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~ 98 (314)
...||.|+..+...+.. + ......++|+.|++.|.
T Consensus 2 ~i~CP~C~~~f~v~~~~-l---~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 2 IITCPNCQTRFRVPDDK-L---PAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EEECCCCCceEEcCHHH-c---ccCCcEEECCCCCcEee
Confidence 46799999987553321 0 01225799999999874
No 296
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=95.49 E-value=0.032 Score=51.89 Aligned_cols=72 Identities=15% Similarity=0.325 Sum_probs=56.5
Q ss_pred eEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC-CCchhhhee
Q 021344 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHA 243 (314)
Q Consensus 169 ~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~-~~~fD~V~~ 243 (314)
.+||||.|||.++....+.|.+ .|+++|.-..|.+.|++...+.+ ..++|.++.---.++... ....|+++.
T Consensus 69 ~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng--~SdkI~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNG--MSDKINVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCC--CccceeeeccccceeeecCcchhhhhhH
Confidence 5899999999999999888854 79999999999999999999888 578888887555444321 223666554
No 297
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=95.40 E-value=0.0085 Score=32.88 Aligned_cols=24 Identities=25% Similarity=0.647 Sum_probs=19.5
Q ss_pred eccCCCccchhcCCCCccccccccCceecCCCCcccc
Q 021344 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (314)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~ 98 (314)
.||.|++.... ..-.|+.||+.|.
T Consensus 2 ~CP~C~~~V~~-------------~~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 2 TCPECGAEVPE-------------SAKFCPHCGYDFE 25 (26)
T ss_pred cCCCCcCCchh-------------hcCcCCCCCCCCc
Confidence 59999997744 5688999998873
No 298
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.38 E-value=0.059 Score=52.02 Aligned_cols=97 Identities=20% Similarity=0.203 Sum_probs=65.2
Q ss_pred CCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-------------
Q 021344 165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR------------- 230 (314)
Q Consensus 165 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~------------- 230 (314)
.++.++|-+|+|. |..+..+++.. +..|+++|.++..++.+++. ..+++..|..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~l----------Ga~~v~v~~~e~g~~~~gYa~~~s 230 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSM----------GAEFLELDFKEEGGSGDGYAKVMS 230 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----------CCeEEeccccccccccccceeecC
Confidence 3568999999998 67666666553 23899999999988877761 22333333211
Q ss_pred ----------CCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEE
Q 021344 231 ----------LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVG 272 (314)
Q Consensus 231 ----------lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i 272 (314)
++-.-..+|+|+..-.+.--+.|.-+.++..+.+|||++++=
T Consensus 231 ~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 231 EEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 110124589998766555555665678888999999998774
No 299
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=95.14 E-value=0.011 Score=33.53 Aligned_cols=26 Identities=19% Similarity=0.649 Sum_probs=14.8
Q ss_pred eccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (314)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (314)
.||.|+++....+. ..+.|+.|++.+
T Consensus 4 ~Cp~C~se~~y~D~----------~~~vCp~C~~ew 29 (30)
T PF08274_consen 4 KCPLCGSEYTYEDG----------ELLVCPECGHEW 29 (30)
T ss_dssp --TTT-----EE-S----------SSEEETTTTEEE
T ss_pred CCCCCCCcceeccC----------CEEeCCcccccC
Confidence 69999998766553 689999999875
No 300
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=95.10 E-value=0.21 Score=43.92 Aligned_cols=103 Identities=16% Similarity=0.143 Sum_probs=71.1
Q ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC---CCchhhhe
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---SGFVDAVH 242 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~---~~~fD~V~ 242 (314)
.++.|+-+| -.-.++.+++-.+-..++..+|+++..+....+.+++.+ ..+++.+..|+.+ |++ .++||+.+
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g---~~~ie~~~~Dlr~-plpe~~~~kFDvfi 226 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELG---YNNIEAFVFDLRN-PLPEDLKRKFDVFI 226 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhC---ccchhheeehhcc-cChHHHHhhCCeee
Confidence 577899999 555566666666655699999999999999999888876 3679999999876 444 35799877
Q ss_pred ecchhccCCCHHHHHHHHHhhcccC---cEEEEEe
Q 021344 243 AGAALHCWPSPSNAVAEISRILRSG---GVFVGTT 274 (314)
Q Consensus 243 ~~~vl~h~~d~~~~l~~i~r~LkpG---G~l~i~~ 274 (314)
..- -+.++-...++..=...||.- |++.++.
T Consensus 227 TDP-peTi~alk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 227 TDP-PETIKALKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred cCc-hhhHHHHHHHHhccHHHhcCCCccceEeeee
Confidence 421 111111224444445566654 7787766
No 301
>PRK00420 hypothetical protein; Validated
Probab=95.06 E-value=0.013 Score=44.36 Aligned_cols=31 Identities=29% Similarity=0.539 Sum_probs=23.2
Q ss_pred eeccCCCccchhcCCCCccccccccCceecCCCCccccCcc
Q 021344 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD 101 (314)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~ 101 (314)
-.||.||.++..... +...|+.||..+...+
T Consensus 24 ~~CP~Cg~pLf~lk~----------g~~~Cp~Cg~~~~v~~ 54 (112)
T PRK00420 24 KHCPVCGLPLFELKD----------GEVVCPVHGKVYIVKS 54 (112)
T ss_pred CCCCCCCCcceecCC----------CceECCCCCCeeeecc
Confidence 469999999876221 6899999998764443
No 302
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=94.97 E-value=0.035 Score=48.84 Aligned_cols=46 Identities=11% Similarity=0.146 Sum_probs=35.5
Q ss_pred CCeEEEEcCcccHHHHHHHHhCC--------CCeEEEEeCCHHHHHHHHHHHHh
Q 021344 167 GGLLVDVSCGSGLFSRKFAKSGT--------YSGVVALDFSENMLRQCYDFIKQ 212 (314)
Q Consensus 167 ~~~iLDiGcG~G~~~~~l~~~~~--------~~~v~giD~s~~~~~~a~~~~~~ 212 (314)
.-+|+|+|.|+|.++..+.+... ..+++-+|+|+...+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 46899999999999888877532 35899999999988888887765
No 303
>PHA01634 hypothetical protein
Probab=94.92 E-value=0.08 Score=40.99 Aligned_cols=47 Identities=17% Similarity=0.073 Sum_probs=41.7
Q ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD 213 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~ 213 (314)
.+++|+|||.+-|..+.+++.+|. ..|+++++++...+..++..+..
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GA-K~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGA-SFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCc-cEEEEeccCHHHHHHHHHHhhhh
Confidence 578999999999999999999984 58999999999999998877653
No 304
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=94.80 E-value=0.31 Score=44.11 Aligned_cols=96 Identities=18% Similarity=0.223 Sum_probs=62.3
Q ss_pred ccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC------CCCC
Q 021344 163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL------PFAS 235 (314)
Q Consensus 163 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l------p~~~ 235 (314)
...++.+||..|+|. |..+..+++.. +.++++++.++...+.+++. .+..+..+-... ....
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~ 230 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKEL----------GADEVLNSLDDSPKDKKAAGLG 230 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHh----------CCCEEEcCCCcCHHHHHHHhcC
Confidence 355678898888774 77877777764 34799999999888877551 122222211111 1123
Q ss_pred CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344 236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
+.+|+|+.... ....++++.+.|+++|.++....
T Consensus 231 ~~~D~vid~~g------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 231 GGFDVIFDFVG------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred CCceEEEECCC------CHHHHHHHHHHhhcCCEEEEECC
Confidence 46887764321 13468889999999999988754
No 305
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=94.75 E-value=0.018 Score=34.38 Aligned_cols=34 Identities=18% Similarity=0.484 Sum_probs=22.8
Q ss_pred eeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (314)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (314)
.+.||.|+......+... ......++|..|++.|
T Consensus 2 ~i~Cp~C~~~y~i~d~~i----p~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 2 IITCPNCQAKYEIDDEKI----PPKGRKVRCSKCGHVF 35 (36)
T ss_pred EEECCCCCCEEeCCHHHC----CCCCcEEECCCCCCEe
Confidence 468999999875543210 0111468999999987
No 306
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=94.73 E-value=0.016 Score=36.05 Aligned_cols=29 Identities=24% Similarity=0.476 Sum_probs=20.0
Q ss_pred eeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (314)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (314)
+.||.|++.....+ ...+.+.|..||.+.
T Consensus 1 m~Cp~Cg~~~~~~D--------~~~g~~vC~~CG~Vl 29 (43)
T PF08271_consen 1 MKCPNCGSKEIVFD--------PERGELVCPNCGLVL 29 (43)
T ss_dssp ESBTTTSSSEEEEE--------TTTTEEEETTT-BBE
T ss_pred CCCcCCcCCceEEc--------CCCCeEECCCCCCEe
Confidence 57999999764322 233788999998664
No 307
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=94.64 E-value=0.48 Score=41.12 Aligned_cols=114 Identities=21% Similarity=0.219 Sum_probs=76.5
Q ss_pred hccCCCCeEEEEcCcccHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC----CCC
Q 021344 162 FKSAQGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----LPF 233 (314)
Q Consensus 162 l~~~~~~~iLDiGcG~G~~~~~l~~~----~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~----lp~ 233 (314)
.....+.+++|+|.|+..-++.+.+. +.-.+++.+|+|...++...+.+.... ..-.+.-+++|.+. +|
T Consensus 74 a~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y--~~l~v~~l~~~~~~~La~~~- 150 (321)
T COG4301 74 ASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREY--PGLEVNALCGDYELALAELP- 150 (321)
T ss_pred HHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhC--CCCeEeehhhhHHHHHhccc-
Confidence 33445778999999998766666554 444689999999998877666555543 23566777777642 23
Q ss_pred CCCchhhheecchhccCCC--HHHHHHHHHhhcccCcEEEEEecccC
Q 021344 234 ASGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRY 278 (314)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d--~~~~l~~i~r~LkpGG~l~i~~~~~~ 278 (314)
..++==.++....|.++.. -..+|.++...|+||-++++-+-..+
T Consensus 151 ~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k 197 (321)
T COG4301 151 RGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRK 197 (321)
T ss_pred CCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccC
Confidence 1122223444555666642 24799999999999999988665543
No 308
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=94.60 E-value=0.21 Score=45.81 Aligned_cols=96 Identities=15% Similarity=0.108 Sum_probs=60.0
Q ss_pred cCCCCeEEEEcCcc-cHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhh
Q 021344 164 SAQGGLLVDVSCGS-GLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 241 (314)
Q Consensus 164 ~~~~~~iLDiGcG~-G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V 241 (314)
..++.+||-+|+|. |.++..+++. ....+++++|.++..++.+++ + + .. ... + .+. ....+|+|
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~---~-----~~-~~~-~--~~~-~~~g~d~v 226 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-A---D-----ET-YLI-D--DIP-EDLAVDHA 226 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-c---C-----ce-eeh-h--hhh-hccCCcEE
Confidence 35688999999987 7676666654 323489999999988887764 1 1 11 111 1 111 11247877
Q ss_pred eecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 242 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 242 ~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
+-.-. . ......+.+..++|++||++++....
T Consensus 227 iD~~G--~-~~~~~~~~~~~~~l~~~G~iv~~G~~ 258 (341)
T cd08237 227 FECVG--G-RGSQSAINQIIDYIRPQGTIGLMGVS 258 (341)
T ss_pred EECCC--C-CccHHHHHHHHHhCcCCcEEEEEeec
Confidence 64221 0 00234688889999999999887643
No 309
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=94.56 E-value=0.22 Score=44.73 Aligned_cols=109 Identities=12% Similarity=0.085 Sum_probs=75.6
Q ss_pred CCeEEEEcCcccHHHHHHHHhC--------------------CCCeEEEEeCCH--HHHHHHHHHHHhc-----------
Q 021344 167 GGLLVDVSCGSGLFSRKFAKSG--------------------TYSGVVALDFSE--NMLRQCYDFIKQD----------- 213 (314)
Q Consensus 167 ~~~iLDiGcG~G~~~~~l~~~~--------------------~~~~v~giD~s~--~~~~~a~~~~~~~----------- 213 (314)
..+||-||.|.|.-..+++... +...++.||+.+ ..+......+...
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3689999999987655555443 113899999975 4555555554443
Q ss_pred -C--CCCCCCeEEEEecCCCCCCC-------CCchhhheecchhcc-----CCCHHHHHHHHHhhcccCcEEEEEec
Q 021344 214 -N--TILTSNLALVRADVCRLPFA-------SGFVDAVHAGAALHC-----WPSPSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 214 -~--~~~~~~v~~~~~d~~~lp~~-------~~~fD~V~~~~vl~h-----~~d~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
. .....++.|.+.|+..+..+ ..+.|+|+..+.++- +....++|..+...++||..|+|++.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 0 01235789999998776532 135799998877653 34556899999999999999998774
No 310
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=94.53 E-value=0.23 Score=44.94 Aligned_cols=89 Identities=15% Similarity=0.122 Sum_probs=58.0
Q ss_pred CCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344 166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (314)
Q Consensus 166 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~ 244 (314)
++.++|-+|+|. |.++..+++......++++|.++..++.+... ..+ |..+. ....+|+|+-.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~------------~~i--~~~~~--~~~g~Dvvid~ 207 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY------------EVL--DPEKD--PRRDYRAIYDA 207 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc------------ccc--Chhhc--cCCCCCEEEEC
Confidence 467899999886 88888887764333577889888776655431 011 11110 12458887754
Q ss_pred chhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 245 ~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
-. . ...++.+.+.|++||++++....
T Consensus 208 ~G-----~-~~~~~~~~~~l~~~G~iv~~G~~ 233 (308)
T TIGR01202 208 SG-----D-PSLIDTLVRRLAKGGEIVLAGFY 233 (308)
T ss_pred CC-----C-HHHHHHHHHhhhcCcEEEEEeec
Confidence 22 2 24578888999999999987643
No 311
>KOG1088 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.49 E-value=0.018 Score=43.28 Aligned_cols=28 Identities=7% Similarity=0.312 Sum_probs=24.6
Q ss_pred ccccCceecCCCCccccCccceeeeecc
Q 021344 82 AIYRSGFKCRKCDKTYSSKDNYLDLTVI 109 (314)
Q Consensus 82 ~i~~~~l~C~~C~~~~~~~~g~~~~~~~ 109 (314)
.+.++.+.|+.||+.|++.+|+++.+..
T Consensus 93 ~v~EG~l~CpetG~vfpI~~GIPNMLL~ 120 (124)
T KOG1088|consen 93 DVIEGELVCPETGRVFPISDGIPNMLLS 120 (124)
T ss_pred hhccceEecCCCCcEeecccCCcccccC
Confidence 4567899999999999999999998753
No 312
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=94.47 E-value=0.032 Score=50.41 Aligned_cols=83 Identities=20% Similarity=0.201 Sum_probs=64.1
Q ss_pred HHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHH-------HHHHHHhcCCCCCCCeEEEEecCCC
Q 021344 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQ-------CYDFIKQDNTILTSNLALVRADVCR 230 (314)
Q Consensus 158 l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~-------a~~~~~~~~~~~~~~v~~~~~d~~~ 230 (314)
+.+.....+|+.|+|-=-|||.++...+..|. -|+|.||+-.+++. .+.++++.+. ...-+.++.+|...
T Consensus 200 ~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa--~viGtDIDyr~vragrg~~~si~aNFkQYg~-~~~fldvl~~D~sn 276 (421)
T KOG2671|consen 200 MANQAMVKPGDIVYDPFVGTGSLLVSAAHFGA--YVIGTDIDYRTVRAGRGEDESIKANFKQYGS-SSQFLDVLTADFSN 276 (421)
T ss_pred HhhhhccCCCCEEecCccccCceeeehhhhcc--eeeccccchheeecccCCCcchhHhHHHhCC-cchhhheeeecccC
Confidence 34455667899999999999999999998877 99999999988872 3456666552 22346788899988
Q ss_pred CCCC-CCchhhhee
Q 021344 231 LPFA-SGFVDAVHA 243 (314)
Q Consensus 231 lp~~-~~~fD~V~~ 243 (314)
-|+. ...||.|+|
T Consensus 277 ~~~rsn~~fDaIvc 290 (421)
T KOG2671|consen 277 PPLRSNLKFDAIVC 290 (421)
T ss_pred cchhhcceeeEEEe
Confidence 7755 447999998
No 313
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=94.45 E-value=0.25 Score=45.56 Aligned_cols=96 Identities=14% Similarity=0.078 Sum_probs=59.7
Q ss_pred cCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeC---CHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC--CCCCCc
Q 021344 164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDF---SENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGF 237 (314)
Q Consensus 164 ~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~---s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l--p~~~~~ 237 (314)
..++.+||-+|+|. |.++..+++.. ..++++++. ++...+.+++. ....+...-.+. ....+.
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~----------Ga~~v~~~~~~~~~~~~~~~ 238 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEEL----------GATYVNSSKTPVAEVKLVGE 238 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHc----------CCEEecCCccchhhhhhcCC
Confidence 34678999999986 77777777764 338999986 67777766651 222221110110 001235
Q ss_pred hhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 238 fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
+|+|+-.- ..+ ..+.+..+.|++||.+++....
T Consensus 239 ~d~vid~~-----g~~-~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 239 FDLIIEAT-----GVP-PLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred CCEEEECc-----CCH-HHHHHHHHHccCCcEEEEEecC
Confidence 77776532 222 3678889999999999876643
No 314
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=94.43 E-value=0.056 Score=47.69 Aligned_cols=105 Identities=16% Similarity=0.203 Sum_probs=64.0
Q ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH-------HH---HhcCCCCCCCeEEEEecCCCCCC-C
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD-------FI---KQDNTILTSNLALVRADVCRLPF-A 234 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~-------~~---~~~~~~~~~~v~~~~~d~~~lp~-~ 234 (314)
.+++|||+|||.|.-...+...+. ..+...|++...++...- .+ ..+ ...-.........+.-+ .
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e---~~~~~~i~~s~l~dg~~~~ 191 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGA-VSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKE---NHKVDEILNSLLSDGVFNH 191 (282)
T ss_pred cCceeEecCCcccccchhhhhhcc-ceeeeEecchhheeeecccceecchhhhhhhhh---cccceeccccccccchhhh
Confidence 578999999999998888777762 488888888876632111 00 000 00111222220001110 1
Q ss_pred CC--chhhheecchhccCCCHHHH-HHHHHhhcccCcEEEEEe
Q 021344 235 SG--FVDAVHAGAALHCWPSPSNA-VAEISRILRSGGVFVGTT 274 (314)
Q Consensus 235 ~~--~fD~V~~~~vl~h~~d~~~~-l~~i~r~LkpGG~l~i~~ 274 (314)
.+ .||+|.++..+....+...+ ......+++++|++++..
T Consensus 192 t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 192 TERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred ccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhh
Confidence 12 79999998888777666655 566667888999887754
No 315
>PHA00626 hypothetical protein
Probab=94.42 E-value=0.026 Score=36.57 Aligned_cols=33 Identities=27% Similarity=0.485 Sum_probs=21.1
Q ss_pred eeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (314)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (314)
+.||.||+..+..-.. -...++.+.|+.||..|
T Consensus 1 m~CP~CGS~~Ivrcg~----cr~~snrYkCkdCGY~f 33 (59)
T PHA00626 1 MSCPKCGSGNIAKEKT----MRGWSDDYVCCDCGYND 33 (59)
T ss_pred CCCCCCCCceeeeece----ecccCcceEcCCCCCee
Confidence 3599999964332110 11124789999999887
No 316
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=94.38 E-value=0.51 Score=44.08 Aligned_cols=137 Identities=16% Similarity=0.131 Sum_probs=78.3
Q ss_pred HHHHHHhccCCCCeEEEEcCcccH----HHHHHHHhC---CCCeEEEEeC----CHHHHHHHHHHHHhcCCCCCCCeEEE
Q 021344 156 KMAQEYFKSAQGGLLVDVSCGSGL----FSRKFAKSG---TYSGVVALDF----SENMLRQCYDFIKQDNTILTSNLALV 224 (314)
Q Consensus 156 ~~l~~~l~~~~~~~iLDiGcG~G~----~~~~l~~~~---~~~~v~giD~----s~~~~~~a~~~~~~~~~~~~~~v~~~ 224 (314)
..|.+.+...+.-.|+|+|.|.|. +...|+.+. |..++|||+. +...++.+.+++.+..-...-.++|.
T Consensus 100 qaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~ 179 (374)
T PF03514_consen 100 QAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFH 179 (374)
T ss_pred HHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEE
Confidence 345555555566789999999996 455555542 4568999999 77777777776655320011233443
Q ss_pred Ee---cCCCC-----CCCCCchhhheecchhccCCC-------HH-HHHHHHHhhcccCcEEEEEecccCCCCCccchHH
Q 021344 225 RA---DVCRL-----PFASGFVDAVHAGAALHCWPS-------PS-NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV 288 (314)
Q Consensus 225 ~~---d~~~l-----p~~~~~fD~V~~~~vl~h~~d-------~~-~~l~~i~r~LkpGG~l~i~~~~~~~~~~~~~~~~ 288 (314)
.. +.+.+ ...++.+=+|-+...|||+.+ |. .+|+ ..+.|+|.-++++..- ......+|..++
T Consensus 180 ~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~-~ir~L~P~vvv~~E~e-a~~n~~~F~~RF 257 (374)
T PF03514_consen 180 PVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLR-VIRSLNPKVVVLVEQE-ADHNSPSFLERF 257 (374)
T ss_pred ecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHH-HHHhcCCCEEEEEeec-CCCCCCchHHHH
Confidence 32 22222 122233334446677888862 22 3554 4557899966655443 333344566666
Q ss_pred HHHHHH
Q 021344 289 LREVML 294 (314)
Q Consensus 289 l~~~~~ 294 (314)
.+.+.|
T Consensus 258 ~eal~y 263 (374)
T PF03514_consen 258 REALHY 263 (374)
T ss_pred HHHHHH
Confidence 555543
No 317
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=94.34 E-value=0.029 Score=38.99 Aligned_cols=50 Identities=18% Similarity=0.461 Sum_probs=34.0
Q ss_pred eeeccCCCccchhcCCCCccccccccCceecC--CCCccccCccceeeeeccc
Q 021344 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCR--KCDKTYSSKDNYLDLTVIS 110 (314)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~--~C~~~~~~~~g~~~~~~~~ 110 (314)
++.||.||+..........+ +...+.+..|. .||+.|...+.+...+...
T Consensus 1 mm~CP~Cg~~a~irtSr~~s-~~~~~~Y~qC~N~eCg~tF~t~es~s~tis~p 52 (72)
T PRK09678 1 MFHCPLCQHAAHARTSRYIT-DTTKERYHQCQNVNCSATFITYESVQRYIVKP 52 (72)
T ss_pred CccCCCCCCccEEEEChhcC-hhhheeeeecCCCCCCCEEEEEEEEEEEEcCC
Confidence 57899999976333322222 23555688898 9999998877777766543
No 318
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=94.27 E-value=0.56 Score=41.69 Aligned_cols=96 Identities=22% Similarity=0.141 Sum_probs=60.1
Q ss_pred ccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-----C-CC
Q 021344 163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F-AS 235 (314)
Q Consensus 163 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-----~-~~ 235 (314)
...++.+||-+|+|. |..+..+++.....+++++|.++...+.+++. + ...+. +..... . ..
T Consensus 117 ~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----G------a~~~i-~~~~~~~~~~~~~~~ 185 (280)
T TIGR03366 117 GDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----G------ATALA-EPEVLAERQGGLQNG 185 (280)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----C------CcEec-CchhhHHHHHHHhCC
Confidence 334688999999876 77777777764233599999999888877762 1 11111 111100 0 12
Q ss_pred CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344 236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
..+|+|+-. ... ...++...+.|+++|++++...
T Consensus 186 ~g~d~vid~-----~G~-~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 186 RGVDVALEF-----SGA-TAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred CCCCEEEEC-----CCC-hHHHHHHHHHhcCCCEEEEecc
Confidence 347777642 222 3457888999999999988764
No 319
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=94.25 E-value=0.51 Score=43.09 Aligned_cols=94 Identities=17% Similarity=0.094 Sum_probs=60.7
Q ss_pred hccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhh
Q 021344 162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 240 (314)
Q Consensus 162 l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~ 240 (314)
....++.+||-.|+|. |.++..+++.. +.++++++.++...+.+++. | .+.+. |..+. ..+.+|+
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~----G------a~~vi-~~~~~--~~~~~d~ 226 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALAL----G------AASAG-GAYDT--PPEPLDA 226 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHh----C------Cceec-ccccc--CcccceE
Confidence 4556788999999865 66666666664 34899999999888877762 1 11111 11111 1235786
Q ss_pred heecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344 241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 241 V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
++.... .. ..+....+.|++||++++...
T Consensus 227 ~i~~~~-----~~-~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 227 AILFAP-----AG-GLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred EEECCC-----cH-HHHHHHHHhhCCCcEEEEEec
Confidence 553222 22 368888899999999988765
No 320
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.22 E-value=0.14 Score=43.78 Aligned_cols=99 Identities=15% Similarity=0.184 Sum_probs=64.8
Q ss_pred CCCchHHHHHHHHHhccC------CCCeEEEEcCcccHH--HHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCC
Q 021344 148 FPGPDEEFKMAQEYFKSA------QGGLLVDVSCGSGLF--SRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS 219 (314)
Q Consensus 148 ~~~~~~~~~~l~~~l~~~------~~~~iLDiGcG~G~~--~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~ 219 (314)
.|+....+.++.+++... ++.++||||.|.-.. +.-..+.++ +.+|.|+++..++.|+..+..+.. ...
T Consensus 54 vPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgw--rfvGseid~~sl~sA~~ii~~N~~-l~~ 130 (292)
T COG3129 54 VPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGW--RFVGSEIDSQSLSSAKAIISANPG-LER 130 (292)
T ss_pred CCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecc--eeecCccCHHHHHHHHHHHHcCcc-hhh
Confidence 466667777777777532 445789999887542 222344455 999999999999999998887621 234
Q ss_pred CeEEEEecCCC-----CCCCCCchhhheecchhcc
Q 021344 220 NLALVRADVCR-----LPFASGFVDAVHAGAALHC 249 (314)
Q Consensus 220 ~v~~~~~d~~~-----lp~~~~~fD~V~~~~vl~h 249 (314)
.+++....-.+ +--.++.||+++|+--+|-
T Consensus 131 ~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 131 AIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred heeEEeccCccccccccccccceeeeEecCCCcch
Confidence 45555433222 1122678999999866653
No 321
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.15 E-value=0.35 Score=48.79 Aligned_cols=109 Identities=11% Similarity=0.035 Sum_probs=60.7
Q ss_pred CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHH-HHHHHHhcCCCCCCCeEEEEecC---CCCCCCCCchhhhe
Q 021344 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQ-CYDFIKQDNTILTSNLALVRADV---CRLPFASGFVDAVH 242 (314)
Q Consensus 167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~-a~~~~~~~~~~~~~~v~~~~~d~---~~lp~~~~~fD~V~ 242 (314)
+..+.-+|.|+=.....+.+.+|+.+++-+|-+...-.. .+..+.... .....++.+.= ....|++=+-=.|+
T Consensus 483 s~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~---~ge~dILiGTQmiaKG~~fp~vtLVgvl 559 (730)
T COG1198 483 SEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFA---NGEADILIGTQMIAKGHDFPNVTLVGVL 559 (730)
T ss_pred CCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHh---CCCCCeeecchhhhcCCCcccceEEEEE
Confidence 346888999999999999999999999999987655332 222222221 23445555442 11223332222344
Q ss_pred ecchhccCCCHH---HHHHHHHhh---cc---cCcEEEEEecccC
Q 021344 243 AGAALHCWPSPS---NAVAEISRI---LR---SGGVFVGTTFLRY 278 (314)
Q Consensus 243 ~~~vl~h~~d~~---~~l~~i~r~---Lk---pGG~l~i~~~~~~ 278 (314)
..+..-+.+|.. .+++-+..+ .. .-|.+++.|+...
T Consensus 560 ~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~ 604 (730)
T COG1198 560 DADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPD 604 (730)
T ss_pred echhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCC
Confidence 445555666653 333333322 22 2356777776654
No 322
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.98 E-value=0.043 Score=51.86 Aligned_cols=105 Identities=22% Similarity=0.301 Sum_probs=79.7
Q ss_pred CCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC----CCCCCchh
Q 021344 165 AQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGFVD 239 (314)
Q Consensus 165 ~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l----p~~~~~fD 239 (314)
.++.+|||.=|++|.-+...++..+ -.++++-|.+++.+...+++++..+ ....++....|+..+ +-....||
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~--v~~ive~~~~DA~~lM~~~~~~~~~FD 185 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG--VEDIVEPHHSDANVLMYEHPMVAKFFD 185 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC--chhhcccccchHHHHHHhccccccccc
Confidence 3567899999999987766666633 3579999999999999999888765 345566667776432 33356899
Q ss_pred hheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344 240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 240 ~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
+|-. .-+..+..+|+.+.+.++.||.|.++..
T Consensus 186 vIDL----DPyGs~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 186 VIDL----DPYGSPSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred eEec----CCCCCccHHHHHHHHHhhcCCEEEEEec
Confidence 8874 3345678899999999999999998664
No 323
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=93.97 E-value=0.22 Score=41.43 Aligned_cols=112 Identities=14% Similarity=0.106 Sum_probs=72.4
Q ss_pred HHHhccCCCCeEEEEcCcccHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC
Q 021344 159 QEYFKSAQGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (314)
Q Consensus 159 ~~~l~~~~~~~iLDiGcG~G~~~~~l~~~----~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~ 234 (314)
.+++-..++..|+++|.-.|..+..++.. |...+|+++|++-..+..+.. ...+|.|+.++-.+....
T Consensus 62 Qellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~--------e~p~i~f~egss~dpai~ 133 (237)
T COG3510 62 QELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAR--------EVPDILFIEGSSTDPAIA 133 (237)
T ss_pred HHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhh--------cCCCeEEEeCCCCCHHHH
Confidence 33444456779999999998766655543 545699999998766444433 137899999997664211
Q ss_pred ------CCchhhhe-ecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344 235 ------SGFVDAVH-AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (314)
Q Consensus 235 ------~~~fD~V~-~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~ 278 (314)
.+.+--|+ +-..-||.....+.|+-+.++|..|-++++.+..-.
T Consensus 134 eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~ 184 (237)
T COG3510 134 EQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVN 184 (237)
T ss_pred HHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEeccccc
Confidence 11222343 333334443445667778889999999999775543
No 324
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=93.96 E-value=0.074 Score=34.74 Aligned_cols=32 Identities=22% Similarity=0.565 Sum_probs=23.4
Q ss_pred eeeccCCCccchhcCCCCccccccccCceecCCCCcccc
Q 021344 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (314)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~ 98 (314)
.+.||.|++.+...+.. . -..+.|+.||..+-
T Consensus 2 ~~~CP~CG~~iev~~~~------~-GeiV~Cp~CGaele 33 (54)
T TIGR01206 2 QFECPDCGAEIELENPE------L-GELVICDECGAELE 33 (54)
T ss_pred ccCCCCCCCEEecCCCc------c-CCEEeCCCCCCEEE
Confidence 46899999988664321 1 24789999999883
No 325
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=93.91 E-value=0.032 Score=39.73 Aligned_cols=30 Identities=27% Similarity=0.704 Sum_probs=22.3
Q ss_pred CeeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (314)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (314)
...+||.|+.+-.... ..+++.|..||..|
T Consensus 34 ~~~~Cp~C~~~~VkR~---------a~GIW~C~kCg~~f 63 (89)
T COG1997 34 AKHVCPFCGRTTVKRI---------ATGIWKCRKCGAKF 63 (89)
T ss_pred cCCcCCCCCCcceeee---------ccCeEEcCCCCCee
Confidence 3567999999843322 33799999999887
No 326
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=93.90 E-value=0.033 Score=32.69 Aligned_cols=29 Identities=38% Similarity=0.751 Sum_probs=15.2
Q ss_pred ccCCCccchhcCCCCccccccccCceecCCCCcc
Q 021344 63 CPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (314)
Q Consensus 63 CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~ 96 (314)
||.||+++....+.+ -.+.-+.|++||.+
T Consensus 3 C~~CG~~l~~~ip~g-----d~r~R~vC~~Cg~I 31 (34)
T PF14803_consen 3 CPQCGGPLERRIPEG-----DDRERLVCPACGFI 31 (34)
T ss_dssp -TTT--B-EEE--TT------SS-EEEETTTTEE
T ss_pred cccccChhhhhcCCC-----CCccceECCCCCCE
Confidence 999999986644321 12357899999765
No 327
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=93.82 E-value=0.22 Score=38.45 Aligned_cols=84 Identities=27% Similarity=0.281 Sum_probs=58.3
Q ss_pred cccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-------C-CCCCchhhheecchh
Q 021344 176 GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-------P-FASGFVDAVHAGAAL 247 (314)
Q Consensus 176 G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-------p-~~~~~fD~V~~~~vl 247 (314)
|.|.++..+++... .+|+++|.++..++.+++. ....+. |..+. . .....+|+|+-.-
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~----------Ga~~~~-~~~~~~~~~~i~~~~~~~~~d~vid~~-- 66 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKEL----------GADHVI-DYSDDDFVEQIRELTGGRGVDVVIDCV-- 66 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHT----------TESEEE-ETTTSSHHHHHHHHTTTSSEEEEEESS--
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhh----------cccccc-cccccccccccccccccccceEEEEec--
Confidence 46888888888754 7999999999999998872 222222 22221 1 1224688887532
Q ss_pred ccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344 248 HCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 248 ~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
.. ...++....+|++||.+++.....
T Consensus 67 ---g~-~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 67 ---GS-GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp ---SS-HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ---Cc-HHHHHHHHHHhccCCEEEEEEccC
Confidence 22 467899999999999999988665
No 328
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=93.81 E-value=0.6 Score=44.10 Aligned_cols=101 Identities=9% Similarity=-0.011 Sum_probs=62.5
Q ss_pred HHHHHHHHhcc-CCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344 154 EFKMAQEYFKS-AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (314)
Q Consensus 154 ~~~~l~~~l~~-~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l 231 (314)
.++.+.+..+. .++++|+-+|+|. |......++.. +.+|+++|.++.....|++ ..+..+. ..+.
T Consensus 188 ~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~----------~G~~~~~--~~e~ 254 (413)
T cd00401 188 LIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAM----------EGYEVMT--MEEA 254 (413)
T ss_pred hHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHh----------cCCEEcc--HHHH
Confidence 33444444332 4688999999998 77666555543 3389999999988777765 2222221 1111
Q ss_pred CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344 232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
-..+|+|+.. ...+..+-.+..+.+|+||+++....
T Consensus 255 ---v~~aDVVI~a-----tG~~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 255 ---VKEGDIFVTT-----TGNKDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred ---HcCCCEEEEC-----CCCHHHHHHHHHhcCCCCcEEEEeCC
Confidence 1246888753 22343333345889999999988773
No 329
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=93.71 E-value=0.018 Score=43.44 Aligned_cols=38 Identities=16% Similarity=0.195 Sum_probs=28.1
Q ss_pred chhhheecchhccCC----C--HHHHHHHHHhhcccCcEEEEEe
Q 021344 237 FVDAVHAGAALHCWP----S--PSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 237 ~fD~V~~~~vl~h~~----d--~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
+||+|+|..|.-++. | ...+++.+++.|+|||.+++.-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 489999987754432 2 2479999999999999999965
No 330
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=93.65 E-value=0.25 Score=45.42 Aligned_cols=52 Identities=19% Similarity=0.187 Sum_probs=39.7
Q ss_pred HHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 021344 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD 208 (314)
Q Consensus 156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~ 208 (314)
+.+.+..+...-..++|+|.|.|.+++.+.-.+ +..|.+||-|....+.|++
T Consensus 143 elvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 143 ELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence 334444444556789999999999999888765 5699999999877777655
No 331
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=93.51 E-value=0.68 Score=42.96 Aligned_cols=100 Identities=26% Similarity=0.196 Sum_probs=61.5
Q ss_pred HhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-----CCC
Q 021344 161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PFA 234 (314)
Q Consensus 161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-----p~~ 234 (314)
.....++.+||-.|+|. |.++..+++.....+|+++|.++...+.+++. + . ..++..+-.+. ...
T Consensus 186 ~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~----G----a-~~~i~~~~~~~~~~i~~~~ 256 (371)
T cd08281 186 TAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL----G----A-TATVNAGDPNAVEQVRELT 256 (371)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc----C----C-ceEeCCCchhHHHHHHHHh
Confidence 34456788999999876 77777777764223699999999988888652 1 1 11111111110 011
Q ss_pred CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
.+.+|+|+-. ... ...+....+.|++||.+++...
T Consensus 257 ~~g~d~vid~-----~G~-~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 257 GGGVDYAFEM-----AGS-VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred CCCCCEEEEC-----CCC-hHHHHHHHHHHhcCCEEEEEcc
Confidence 2257777642 222 2457788899999999987654
No 332
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=93.51 E-value=0.037 Score=42.95 Aligned_cols=26 Identities=35% Similarity=0.685 Sum_probs=21.4
Q ss_pred eeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (314)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (314)
..||.||.+|...+ |.+.|+.|++..
T Consensus 29 ~hCp~Cg~PLF~Kd-----------G~v~CPvC~~~~ 54 (131)
T COG1645 29 KHCPKCGTPLFRKD-----------GEVFCPVCGYRE 54 (131)
T ss_pred hhCcccCCcceeeC-----------CeEECCCCCceE
Confidence 45999999998744 789999999654
No 333
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=93.48 E-value=0.92 Score=41.82 Aligned_cols=99 Identities=16% Similarity=0.119 Sum_probs=61.6
Q ss_pred hccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-----CC-C
Q 021344 162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PF-A 234 (314)
Q Consensus 162 l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-----p~-~ 234 (314)
....++.+||-.|+|. |..+..+++.....+|+++|.++...+.+++. + . -.++...-.+. .. .
T Consensus 172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~----G----a-~~~i~~~~~~~~~~i~~~~~ 242 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF----G----A-THTVNSSGTDPVEAIRALTG 242 (358)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----C----C-ceEEcCCCcCHHHHHHHHhC
Confidence 3456788999999876 77777777764323599999999888888652 1 1 11221111110 01 1
Q ss_pred CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
...+|+|+-. ...+ ..+....+.|++||++++...
T Consensus 243 ~~g~d~vid~-----~g~~-~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 243 GFGADVVIDA-----VGRP-ETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCCCCEEEEC-----CCCH-HHHHHHHHHhccCCEEEEECC
Confidence 2347777632 2333 357778889999999988664
No 334
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=93.44 E-value=0.16 Score=45.27 Aligned_cols=67 Identities=18% Similarity=0.233 Sum_probs=51.1
Q ss_pred eEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC--CCchhhheecc
Q 021344 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA--SGFVDAVHAGA 245 (314)
Q Consensus 169 ~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~--~~~fD~V~~~~ 245 (314)
+++|+-||.|.+...+...|. ..+.++|+++.+++..+.+... ..+.+|+.++... ...+|+++...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~-~~v~a~e~~~~a~~~~~~N~~~---------~~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGF-EIVAANEIDKSAAETYEANFPN---------KLIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCC-EEEEEEeCCHHHHHHHHHhCCC---------CCccCccccCchhhcCCCCCEEEeCC
Confidence 689999999999999988874 4688999999999888876421 1566777765432 34699998754
No 335
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=93.39 E-value=0.87 Score=36.31 Aligned_cols=93 Identities=17% Similarity=0.142 Sum_probs=48.0
Q ss_pred CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHH----------------HHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENM----------------LRQCYDFIKQDNTILTSNLALVRADVCR 230 (314)
Q Consensus 167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~----------------~~~a~~~~~~~~~~~~~~v~~~~~d~~~ 230 (314)
.+-|||+|=|+|+.-.+|.+..++.+++++|-.-.. -+.... +...+ ..+.++++|+-.
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~tl~~-~~~~g----~~a~laHaD~G~ 103 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIRETLPA-LARFG----AGAALAHADIGT 103 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HHHHHHH-HHHH-----S-EEEEEE----
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHHHHhHH-HHhcC----CceEEEEeecCC
Confidence 468999999999999999999999999999963221 111111 22222 455666666532
Q ss_pred CCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344 231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
- +..-|+++..+ +-.-+..+|.|||+++-..+..
T Consensus 104 g---~~~~d~a~a~~----------lspli~~~la~gGi~vS~~pl~ 137 (160)
T PF12692_consen 104 G---DKEKDDATAAW----------LSPLIAPVLAPGGIMVSGQPLY 137 (160)
T ss_dssp S----HHHHHHHHHH----------HHHHHGGGEEEEEEEEESS---
T ss_pred C---CcchhHHHHHh----------hhHHHHHHhcCCcEEEeCCccc
Confidence 1 22234444332 2344668899999998766443
No 336
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=93.36 E-value=0.12 Score=48.64 Aligned_cols=111 Identities=23% Similarity=0.176 Sum_probs=70.0
Q ss_pred CCCCeEEEEcCcccH--HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEe-cC--CCCCCC-CCch
Q 021344 165 AQGGLLVDVSCGSGL--FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DV--CRLPFA-SGFV 238 (314)
Q Consensus 165 ~~~~~iLDiGcG~G~--~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~-d~--~~lp~~-~~~f 238 (314)
.....++|+|.|.|. ++....-......+..||.+..|.....+...... ..+-.++.. -+ ..+|.. .+.|
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~---~~g~~~v~~~~~~r~~~pi~~~~~y 275 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGS---HIGEPIVRKLVFHRQRLPIDIKNGY 275 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChh---hcCchhccccchhcccCCCCcccce
Confidence 345678899988765 33333333445589999999999998888776511 011111111 11 124433 3459
Q ss_pred hhheecchhccCCCHH---HHHHHH-HhhcccCcEEEEEecccC
Q 021344 239 DAVHAGAALHCWPSPS---NAVAEI-SRILRSGGVFVGTTFLRY 278 (314)
Q Consensus 239 D~V~~~~vl~h~~d~~---~~l~~i-~r~LkpGG~l~i~~~~~~ 278 (314)
|+|++.+.++++.+.. ...+++ .+..++||.+++...+..
T Consensus 276 Dlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 276 DLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred eeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 9999999999998764 233333 345678999998886543
No 337
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=93.35 E-value=0.11 Score=49.29 Aligned_cols=114 Identities=18% Similarity=0.165 Sum_probs=80.5
Q ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-------CCCCCCch
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-------LPFASGFV 238 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-------lp~~~~~f 238 (314)
.+..+|-+|-|.|.+...+....+...++++++++.+++.|++++.... ..+......|..+ ..-.+..|
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q---~~r~~V~i~dGl~~~~~~~k~~~~~~~~ 371 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ---SDRNKVHIADGLDFLQRTAKSQQEDICP 371 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh---hhhhhhhHhhchHHHHHHhhccccccCC
Confidence 4668999999999999999988888899999999999999998775532 2233333334321 11135579
Q ss_pred hhheec----chhccCCCH------HHHHHHHHhhcccCcEEEEEecccCCCCCc
Q 021344 239 DAVHAG----AALHCWPSP------SNAVAEISRILRSGGVFVGTTFLRYTSSTS 283 (314)
Q Consensus 239 D~V~~~----~vl~h~~d~------~~~l~~i~r~LkpGG~l~i~~~~~~~~~~~ 283 (314)
|+++.. . .|-+..| ..+|..+...|.|.|.+++....+.....+
T Consensus 372 dvl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~ 425 (482)
T KOG2352|consen 372 DVLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKD 425 (482)
T ss_pred cEEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhH
Confidence 988752 2 2333322 367888999999999999988777544433
No 338
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=93.34 E-value=0.047 Score=41.26 Aligned_cols=29 Identities=21% Similarity=0.634 Sum_probs=23.2
Q ss_pred eccCCCccchhcCCCCccccccccCceecCCCCccccCc
Q 021344 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (314)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~ 100 (314)
+||.||..++-..- ....|+.||..|+..
T Consensus 11 ~Cp~CG~kFYDLnk----------~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 11 TCPSCGAKFYDLNK----------DPIVCPKCGTEFPPE 39 (108)
T ss_pred cCCCCcchhccCCC----------CCccCCCCCCccCcc
Confidence 59999999865442 468899999999665
No 339
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=93.33 E-value=0.076 Score=33.49 Aligned_cols=30 Identities=17% Similarity=0.438 Sum_probs=22.4
Q ss_pred CeeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (314)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (314)
..+.||.||..+...... ..++|+.||..+
T Consensus 2 ~~y~C~~CG~~~~~~~~~---------~~~~Cp~CG~~~ 31 (46)
T PRK00398 2 AEYKCARCGREVELDEYG---------TGVRCPYCGYRI 31 (46)
T ss_pred CEEECCCCCCEEEECCCC---------CceECCCCCCeE
Confidence 468899999988664321 278999998765
No 340
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=93.23 E-value=0.38 Score=44.09 Aligned_cols=51 Identities=12% Similarity=0.133 Sum_probs=39.7
Q ss_pred ccCCCCeEEEEcCcccHHHHHHHHhC--------CCCeEEEEeCCHHHHHHHHHHHHhc
Q 021344 163 KSAQGGLLVDVSCGSGLFSRKFAKSG--------TYSGVVALDFSENMLRQCYDFIKQD 213 (314)
Q Consensus 163 ~~~~~~~iLDiGcG~G~~~~~l~~~~--------~~~~v~giD~s~~~~~~a~~~~~~~ 213 (314)
.....-.++++|.|.|.++..+++.. ...++.-||+|+...+.=++.++..
T Consensus 74 g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 74 GRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred cCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 33345689999999999988877652 2568999999999888777777654
No 341
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=93.19 E-value=0.041 Score=33.13 Aligned_cols=35 Identities=17% Similarity=0.425 Sum_probs=22.0
Q ss_pred eeeccCCCccchhcCCCCccccccccCceecCCCCcccc
Q 021344 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (314)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~ 98 (314)
.+.||.|++......... ......++|++||+.|.
T Consensus 2 ~~~CP~C~~~~~v~~~~~----~~~~~~v~C~~C~~~~~ 36 (38)
T TIGR02098 2 RIQCPNCKTSFRVVDSQL----GANGGKVRCGKCGHVWY 36 (38)
T ss_pred EEECCCCCCEEEeCHHHc----CCCCCEEECCCCCCEEE
Confidence 368999999765432110 00113689999998763
No 342
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.00 E-value=1.8 Score=42.16 Aligned_cols=34 Identities=18% Similarity=0.102 Sum_probs=25.6
Q ss_pred CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCH
Q 021344 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSE 200 (314)
Q Consensus 167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~ 200 (314)
+..+--.|.|+=.....+.+.+++..+..+|-+.
T Consensus 261 s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~ 294 (505)
T TIGR00595 261 SEDLVYKGYGTEQVEEELAKLFPGARIARIDSDT 294 (505)
T ss_pred CCeeEeecccHHHHHHHHHhhCCCCcEEEEeccc
Confidence 3456778888888888888887777888887653
No 343
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=92.94 E-value=0.059 Score=32.09 Aligned_cols=28 Identities=18% Similarity=0.530 Sum_probs=21.0
Q ss_pred CeeeccCCCccchhcCCCCccccccccCceecCCCCcc
Q 021344 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (314)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~ 96 (314)
....|++|++.....+ .+.+.|..||+.
T Consensus 7 ~~~~C~~C~~~~~~~~----------dG~~yC~~cG~~ 34 (36)
T PF11781_consen 7 PNEPCPVCGSRWFYSD----------DGFYYCDRCGHQ 34 (36)
T ss_pred CCCcCCCCCCeEeEcc----------CCEEEhhhCceE
Confidence 4456999999854433 289999999976
No 344
>PRK14873 primosome assembly protein PriA; Provisional
Probab=92.82 E-value=0.56 Score=47.13 Aligned_cols=96 Identities=18% Similarity=0.074 Sum_probs=56.7
Q ss_pred CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec--
Q 021344 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG-- 244 (314)
Q Consensus 167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~-- 244 (314)
+..+.-.|-|+-.....+.+.+++..|.-+|-+. .++ .+. ....++.+.-...|.-.+.+.+|...
T Consensus 430 s~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~d~-~l~----~~~-------~~~~IlVGTqgaepm~~g~~~lV~ilda 497 (665)
T PRK14873 430 SDRLRAVVVGARRTAEELGRAFPGVPVVTSGGDQ-VVD----TVD-------AGPALVVATPGAEPRVEGGYGAALLLDA 497 (665)
T ss_pred CCcceeeeccHHHHHHHHHHHCCCCCEEEEChHH-HHH----hhc-------cCCCEEEECCCCcccccCCceEEEEEcc
Confidence 4457888999999999999999888898888542 221 111 24566766632233333456655432
Q ss_pred chhccCCCH---HHHHHHHHhh---c---ccCcEEEEEe
Q 021344 245 AALHCWPSP---SNAVAEISRI---L---RSGGVFVGTT 274 (314)
Q Consensus 245 ~vl~h~~d~---~~~l~~i~r~---L---kpGG~l~i~~ 274 (314)
+.+-+.+|. +.+++.+.++ . +++|.++|.+
T Consensus 498 D~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~ 536 (665)
T PRK14873 498 WALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVA 536 (665)
T ss_pred hhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEe
Confidence 223344443 3444444433 3 3478888875
No 345
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=92.75 E-value=0.049 Score=41.32 Aligned_cols=22 Identities=32% Similarity=0.921 Sum_probs=18.9
Q ss_pred ccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344 63 CPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (314)
Q Consensus 63 CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (314)
||+||+++.. ..+.|++|+...
T Consensus 1 CPvCg~~l~v-------------t~l~C~~C~t~i 22 (113)
T PF09862_consen 1 CPVCGGELVV-------------TRLKCPSCGTEI 22 (113)
T ss_pred CCCCCCceEE-------------EEEEcCCCCCEE
Confidence 9999999976 579999998664
No 346
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=92.75 E-value=0.045 Score=33.26 Aligned_cols=37 Identities=14% Similarity=0.225 Sum_probs=20.8
Q ss_pred eeccCCCccchhcC-CCCccccccccCceecCCCCccc
Q 021344 61 FSCPICYEPLIRKG-PTGLTLGAIYRSGFKCRKCDKTY 97 (314)
Q Consensus 61 l~CP~C~~~l~~~~-~~~~~~~~i~~~~l~C~~C~~~~ 97 (314)
+.||.|+....... .+....++.+.-.+.|.+||+.|
T Consensus 1 ~~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~~w 38 (39)
T PF01096_consen 1 IKCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGHRW 38 (39)
T ss_dssp S--SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTEEE
T ss_pred CCCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCCee
Confidence 36999999632211 11223455556688999999876
No 347
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=92.65 E-value=0.051 Score=28.85 Aligned_cols=22 Identities=23% Similarity=0.588 Sum_probs=16.7
Q ss_pred eccCCCccchhcCCCCccccccccCceecCCCCcc
Q 021344 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (314)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~ 96 (314)
.||.||.++.. +.-.|+.||+.
T Consensus 1 ~Cp~CG~~~~~-------------~~~fC~~CG~~ 22 (23)
T PF13240_consen 1 YCPNCGAEIED-------------DAKFCPNCGTP 22 (23)
T ss_pred CCcccCCCCCC-------------cCcchhhhCCc
Confidence 39999998753 45679999864
No 348
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=92.57 E-value=2.5 Score=37.32 Aligned_cols=117 Identities=11% Similarity=-0.024 Sum_probs=73.6
Q ss_pred HHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-C-----
Q 021344 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L----- 231 (314)
Q Consensus 158 l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-l----- 231 (314)
+.+.+.. ....|+.+|||-=.-...+.. ..+..++-+|. ++.++.=++.+.+.+.....+.+++..|+.. +
T Consensus 74 i~~~~~~-g~~qvV~LGaGlDTr~~Rl~~-~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~ 150 (260)
T TIGR00027 74 LLAAVAA-GIRQVVILGAGLDTRAYRLPW-PDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALA 150 (260)
T ss_pred HHHHHhc-CCcEEEEeCCccccHHHhcCC-CCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHH
Confidence 3334433 245799999997554444432 22346666665 5566666667765432234688999999862 1
Q ss_pred --CCCCCchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEeccc
Q 021344 232 --PFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 232 --p~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
.+..+.--++++-.++.+++.. ..+++.+.+...||+.+++.....
T Consensus 151 ~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 151 AAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred hCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 0112233367778888888754 478999988888999998876443
No 349
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=92.56 E-value=3.4 Score=40.24 Aligned_cols=127 Identities=14% Similarity=0.129 Sum_probs=77.8
Q ss_pred CCCchHHHHHHHHHhccC--CCCeEEEEcCcccHHHHHHHHh---C-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCe
Q 021344 148 FPGPDEEFKMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKS---G-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNL 221 (314)
Q Consensus 148 ~~~~~~~~~~l~~~l~~~--~~~~iLDiGcG~G~~~~~l~~~---~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v 221 (314)
+..+.+.++.+.+.+... ++..+.|.-||+|.++....+. + ....++|.+....+...++.++..++. .....
T Consensus 197 ~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~-~~~t~ 275 (501)
T TIGR00497 197 FFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI-DYANF 275 (501)
T ss_pred eeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC-Ccccc
Confidence 567778888877776643 5578999999999988765432 1 124689999999999999887544431 01122
Q ss_pred EEEEecCCCCC-C-CCCchhhheecch--------------------hcc----CCC-HHHHHHHHHhhcccCcEEEEEe
Q 021344 222 ALVRADVCRLP-F-ASGFVDAVHAGAA--------------------LHC----WPS-PSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 222 ~~~~~d~~~lp-~-~~~~fD~V~~~~v--------------------l~h----~~d-~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
....+|....+ + ....||+|+++-- +.| ..+ -..++..+..+|++||+..+.-
T Consensus 276 ~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~ 355 (501)
T TIGR00497 276 NIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVC 355 (501)
T ss_pred CcccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEe
Confidence 23233332211 1 1234666654211 112 111 1367888899999999866655
Q ss_pred c
Q 021344 275 F 275 (314)
Q Consensus 275 ~ 275 (314)
.
T Consensus 356 ~ 356 (501)
T TIGR00497 356 F 356 (501)
T ss_pred c
Confidence 3
No 350
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=92.38 E-value=2.1 Score=37.07 Aligned_cols=96 Identities=23% Similarity=0.282 Sum_probs=60.2
Q ss_pred CCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-----CCCCCch
Q 021344 165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PFASGFV 238 (314)
Q Consensus 165 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-----p~~~~~f 238 (314)
.++.+||..|+|. |..+..+++.. +.++++++.++...+.+++.- ...++...-... ....+.+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g---------~~~~~~~~~~~~~~~~~~~~~~~~ 202 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKELG---------ADHVIDYKEEDLEEELRLTGGGGA 202 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhC---------CceeccCCcCCHHHHHHHhcCCCC
Confidence 5688999999996 77776666654 359999999988777765421 011111110000 0123468
Q ss_pred hhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 239 D~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
|+|+... ... ..+..+.+.|+++|.++.....
T Consensus 203 d~vi~~~-----~~~-~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 203 DVVIDAV-----GGP-ETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred CEEEECC-----CCH-HHHHHHHHhcccCCEEEEEccC
Confidence 8887532 221 4577788899999999876643
No 351
>PLN02740 Alcohol dehydrogenase-like
Probab=92.29 E-value=1.4 Score=41.03 Aligned_cols=100 Identities=14% Similarity=0.139 Sum_probs=61.7
Q ss_pred hccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC--C-----CC
Q 021344 162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR--L-----PF 233 (314)
Q Consensus 162 l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~--l-----p~ 233 (314)
....++.+||-+|+|. |..+..+++.....+|+++|.++..++.+++. + .. .++...-.+ . ..
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~----G----a~-~~i~~~~~~~~~~~~v~~~ 264 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM----G----IT-DFINPKDSDKPVHERIREM 264 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc----C----Cc-EEEecccccchHHHHHHHH
Confidence 4556788999999886 77777777765333699999999988888652 1 11 122111000 0 01
Q ss_pred CCCchhhheecchhccCCCHHHHHHHHHhhcccC-cEEEEEecc
Q 021344 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTFL 276 (314)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpG-G~l~i~~~~ 276 (314)
..+.+|+|+-. ...+ ..+....+.+++| |++++....
T Consensus 265 ~~~g~dvvid~-----~G~~-~~~~~a~~~~~~g~G~~v~~G~~ 302 (381)
T PLN02740 265 TGGGVDYSFEC-----AGNV-EVLREAFLSTHDGWGLTVLLGIH 302 (381)
T ss_pred hCCCCCEEEEC-----CCCh-HHHHHHHHhhhcCCCEEEEEccC
Confidence 12257777643 2233 4577777888897 988776543
No 352
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=92.21 E-value=0.097 Score=33.68 Aligned_cols=29 Identities=24% Similarity=0.488 Sum_probs=20.0
Q ss_pred CeeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (314)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (314)
..-.||.||+.+.... .+.+.|..||..+
T Consensus 19 ~~~fCP~Cg~~~m~~~----------~~r~~C~~Cgyt~ 47 (50)
T PRK00432 19 KNKFCPRCGSGFMAEH----------LDRWHCGKCGYTE 47 (50)
T ss_pred ccCcCcCCCcchhecc----------CCcEECCCcCCEE
Confidence 3447999999632221 1689999998765
No 353
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=92.09 E-value=0.17 Score=44.31 Aligned_cols=115 Identities=17% Similarity=0.177 Sum_probs=61.9
Q ss_pred HHhccCCCCeEEEEcCcccHHHHHHHH---h-C-CCCeEEEEeCCH--------------------------HHHHHHHH
Q 021344 160 EYFKSAQGGLLVDVSCGSGLFSRKFAK---S-G-TYSGVVALDFSE--------------------------NMLRQCYD 208 (314)
Q Consensus 160 ~~l~~~~~~~iLDiGcG~G~~~~~l~~---~-~-~~~~v~giD~s~--------------------------~~~~~a~~ 208 (314)
..+...-.+.|+|+||-.|..+..++. . + .+.++++.|--+ ...+..++
T Consensus 68 ~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~ 147 (248)
T PF05711_consen 68 QVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRE 147 (248)
T ss_dssp HCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHH
T ss_pred HHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHH
Confidence 333344567899999999976654432 2 1 355788888311 12344444
Q ss_pred HHHhcCCCCCCCeEEEEecCCC-CC-CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344 209 FIKQDNTILTSNLALVRADVCR-LP-FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 209 ~~~~~~~~~~~~v~~~~~d~~~-lp-~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
++...+. ...++.++.|.+.+ +| .+.+++-++.... .........|..++..|.|||++++-++..
T Consensus 148 n~~~~gl-~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~--DlYesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 148 NFARYGL-LDDNVRFVKGWFPDTLPDAPIERIALLHLDC--DLYESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp CCCCTTT-SSTTEEEEES-HHHHCCC-TT--EEEEEE-----SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred HHHHcCC-CcccEEEECCcchhhhccCCCccEEEEEEec--cchHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 4444432 24689999999843 33 1222332222211 111123578999999999999999988765
No 354
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=92.05 E-value=0.12 Score=30.13 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=23.2
Q ss_pred CeeeccCCCccchhcCCCCccccccccCceecCCCCcccc
Q 021344 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (314)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~ 98 (314)
.+..|+.|++...... ..+.+.|..||..|+
T Consensus 2 ~~~~C~~C~~~~i~~~---------~~~~~~C~~Cg~~~~ 32 (33)
T PF08792_consen 2 NLKKCSKCGGNGIVNK---------EDDYEVCIFCGSSFP 32 (33)
T ss_pred CceEcCCCCCCeEEEe---------cCCeEEcccCCcEee
Confidence 3567999999886622 126899999998874
No 355
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=92.04 E-value=0.1 Score=30.15 Aligned_cols=27 Identities=19% Similarity=0.349 Sum_probs=15.2
Q ss_pred eccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (314)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (314)
-||.||++...... ....+|+.|++.+
T Consensus 5 fC~~CG~~t~~~~~---------g~~r~C~~Cg~~~ 31 (32)
T PF09297_consen 5 FCGRCGAPTKPAPG---------GWARRCPSCGHEH 31 (32)
T ss_dssp B-TTT--BEEE-SS---------SS-EEESSSS-EE
T ss_pred ccCcCCccccCCCC---------cCEeECCCCcCEe
Confidence 39999999866442 1578999998753
No 356
>PTZ00357 methyltransferase; Provisional
Probab=92.00 E-value=0.82 Score=45.40 Aligned_cols=100 Identities=16% Similarity=0.192 Sum_probs=63.4
Q ss_pred eEEEEcCcccHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHh-cCCC-----CCCCeEEEEecCCCCCCCC---
Q 021344 169 LLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQ-DNTI-----LTSNLALVRADVCRLPFAS--- 235 (314)
Q Consensus 169 ~iLDiGcG~G~~~~~l~~~----~~~~~v~giD~s~~~~~~a~~~~~~-~~~~-----~~~~v~~~~~d~~~lp~~~--- 235 (314)
.|+-+|+|-|-+.....+. +-..++++||-++..+...+.+... ..+. ....|+++..|+..+..+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999876555443 4456899999996654444444322 2210 0245999999998764321
Q ss_pred --------CchhhheecchhccCCCH---HHHHHHHHhhccc----CcE
Q 021344 236 --------GFVDAVHAGAALHCWPSP---SNAVAEISRILRS----GGV 269 (314)
Q Consensus 236 --------~~fD~V~~~~vl~h~~d~---~~~l~~i~r~Lkp----GG~ 269 (314)
+++|+|++ ..|--+.|- .+-|..+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 36998886 223333332 2457777777876 675
No 357
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=91.96 E-value=1.8 Score=39.42 Aligned_cols=104 Identities=17% Similarity=0.203 Sum_probs=68.8
Q ss_pred HHHhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC------C
Q 021344 159 QEYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR------L 231 (314)
Q Consensus 159 ~~~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~------l 231 (314)
....+.+++.++.-+|||. |.....-++.....+++++|+++..++.|++. ...+++...-.. .
T Consensus 178 ~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f---------GAT~~vn~~~~~~vv~~i~ 248 (366)
T COG1062 178 VNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF---------GATHFVNPKEVDDVVEAIV 248 (366)
T ss_pred hhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc---------CCceeecchhhhhHHHHHH
Confidence 3445667899999999997 77777666665466999999999999999883 223333321110 0
Q ss_pred CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344 232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
...++..|.+ ++...+.. .++.....+.++|..++.....
T Consensus 249 ~~T~gG~d~~-----~e~~G~~~-~~~~al~~~~~~G~~v~iGv~~ 288 (366)
T COG1062 249 ELTDGGADYA-----FECVGNVE-VMRQALEATHRGGTSVIIGVAG 288 (366)
T ss_pred HhcCCCCCEE-----EEccCCHH-HHHHHHHHHhcCCeEEEEecCC
Confidence 1223334443 44444444 6788888888899998877654
No 358
>PLN02827 Alcohol dehydrogenase-like
Probab=91.83 E-value=1.6 Score=40.74 Aligned_cols=99 Identities=15% Similarity=0.192 Sum_probs=59.3
Q ss_pred hccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEec-----CCC-C-CC
Q 021344 162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD-----VCR-L-PF 233 (314)
Q Consensus 162 l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d-----~~~-l-p~ 233 (314)
....++.+||-+|+|. |.++..+++......++++|.++...+.+++. + .. .++... ... + ..
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l----G----a~-~~i~~~~~~~~~~~~v~~~ 259 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF----G----VT-DFINPNDLSEPIQQVIKRM 259 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----C----Cc-EEEcccccchHHHHHHHHH
Confidence 3456788999999876 77777777764333689999999888777652 1 11 111110 000 0 01
Q ss_pred CCCchhhheecchhccCCCHHHHHHHHHhhcccC-cEEEEEec
Q 021344 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF 275 (314)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpG-G~l~i~~~ 275 (314)
..+.+|+|+-. ...+ ..+....+.|++| |++++...
T Consensus 260 ~~~g~d~vid~-----~G~~-~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 260 TGGGADYSFEC-----VGDT-GIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred hCCCCCEEEEC-----CCCh-HHHHHHHHhhccCCCEEEEECC
Confidence 12247766642 2222 3467788889998 99987553
No 359
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=91.66 E-value=0.11 Score=38.68 Aligned_cols=31 Identities=16% Similarity=0.487 Sum_probs=24.5
Q ss_pred eeccCCCccchhcCCCCccccccccCceecCCCCccccCcc
Q 021344 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD 101 (314)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~ 101 (314)
-.||.|+++..-.+. ..+.|+.|+|.|...+
T Consensus 3 p~CP~C~seytY~dg----------~~~iCpeC~~EW~~~~ 33 (109)
T TIGR00686 3 PPCPKCNSEYTYHDG----------TQLICPSCLYEWNENE 33 (109)
T ss_pred CcCCcCCCcceEecC----------CeeECccccccccccc
Confidence 469999999866554 5799999999995543
No 360
>PRK05580 primosome assembly protein PriA; Validated
Probab=91.63 E-value=3.1 Score=42.12 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=23.9
Q ss_pred CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCC
Q 021344 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFS 199 (314)
Q Consensus 167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s 199 (314)
+..+-..|-|+=.....+.+.+++.++.-+|-+
T Consensus 429 ~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d 461 (679)
T PRK05580 429 STDLVPVGPGTERLEEELAELFPEARILRIDRD 461 (679)
T ss_pred CCeeEEeeccHHHHHHHHHHhCCCCcEEEEecc
Confidence 345677778887888888887776677777754
No 361
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=91.61 E-value=0.096 Score=42.26 Aligned_cols=40 Identities=25% Similarity=0.529 Sum_probs=22.9
Q ss_pred eeccCCCccchhc-CCCCccccccccCceecCCCCccccCc
Q 021344 61 FSCPICYEPLIRK-GPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (314)
Q Consensus 61 l~CP~C~~~l~~~-~~~~~~~~~i~~~~l~C~~C~~~~~~~ 100 (314)
+.||-||++.... .......+...+....|++||..|...
T Consensus 1 m~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f~~~ 41 (154)
T PRK00464 1 MRCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRFTTF 41 (154)
T ss_pred CcCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcceEe
Confidence 4799999976221 111111222222238899999998543
No 362
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=91.60 E-value=1.9 Score=39.20 Aligned_cols=100 Identities=14% Similarity=0.071 Sum_probs=60.3
Q ss_pred HhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC---C-CC-C
Q 021344 161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR---L-PF-A 234 (314)
Q Consensus 161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~---l-p~-~ 234 (314)
.+...++.+||-+|+|. |.++..+++.....+++++|.++...+.+++. + . -.++...-.. + .. .
T Consensus 158 ~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----g----a-~~~i~~~~~~~~~~~~~~~ 228 (339)
T cd08239 158 RVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----G----A-DFVINSGQDDVQEIRELTS 228 (339)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----C----C-CEEEcCCcchHHHHHHHhC
Confidence 34556788999999875 66776677664222399999999888877652 1 1 1111111000 0 01 1
Q ss_pred CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
...+|+|+-.. .. ...+....+.|+++|.+++...
T Consensus 229 ~~~~d~vid~~-----g~-~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 229 GAGADVAIECS-----GN-TAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred CCCCCEEEECC-----CC-HHHHHHHHHHhhcCCEEEEEcC
Confidence 23588877432 12 2346777889999999987654
No 363
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=91.48 E-value=2.4 Score=39.02 Aligned_cols=99 Identities=12% Similarity=0.042 Sum_probs=61.5
Q ss_pred HhccCCCCeEEEEcC-c-ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEe----cCCC-C-C
Q 021344 161 YFKSAQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA----DVCR-L-P 232 (314)
Q Consensus 161 ~l~~~~~~~iLDiGc-G-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~----d~~~-l-p 232 (314)
.....++.+||-.|+ | .|.++..+++.. +.++++++.++...+.+++.+. .. .++.. +..+ + .
T Consensus 153 ~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~~lG-------a~-~vi~~~~~~~~~~~i~~ 223 (348)
T PLN03154 153 VCSPKKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKNKLG-------FD-EAFNYKEEPDLDAALKR 223 (348)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhcC-------CC-EEEECCCcccHHHHHHH
Confidence 344567889999998 3 588888888774 3489999999887777653221 11 11211 1100 0 0
Q ss_pred CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344 233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
...+.+|+|+-. +. ...+....+.|++||++++...
T Consensus 224 ~~~~gvD~v~d~-----vG--~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 224 YFPEGIDIYFDN-----VG--GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred HCCCCcEEEEEC-----CC--HHHHHHHHHHhccCCEEEEECc
Confidence 112357777643 22 2467888999999999987654
No 364
>PRK10220 hypothetical protein; Provisional
Probab=91.48 E-value=0.13 Score=38.26 Aligned_cols=32 Identities=19% Similarity=0.584 Sum_probs=25.0
Q ss_pred eeeccCCCccchhcCCCCccccccccCceecCCCCccccCcc
Q 021344 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD 101 (314)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~ 101 (314)
+-.||.|+++..-.+. ..+.|+.|++.|...+
T Consensus 3 lP~CP~C~seytY~d~----------~~~vCpeC~hEW~~~~ 34 (111)
T PRK10220 3 LPHCPKCNSEYTYEDN----------GMYICPECAHEWNDAE 34 (111)
T ss_pred CCcCCCCCCcceEcCC----------CeEECCcccCcCCccc
Confidence 3469999998866554 5799999999996543
No 365
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=91.31 E-value=0.48 Score=42.54 Aligned_cols=100 Identities=20% Similarity=0.192 Sum_probs=73.1
Q ss_pred CCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344 166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (314)
Q Consensus 166 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~ 244 (314)
+..+|.-||.|. |.....++.-. ..+|+-+|+|.+.+++....+ ..++..+..+...+.-.-.+.|+|+..
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f-------~~rv~~~~st~~~iee~v~~aDlvIga 238 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLF-------GGRVHTLYSTPSNIEEAVKKADLVIGA 238 (371)
T ss_pred CCccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhh-------CceeEEEEcCHHHHHHHhhhccEEEEE
Confidence 456788899987 77766666543 459999999999888877754 256777776665544334478988875
Q ss_pred chhccCCCHHHHHHHHHhhcccCcEEEEE
Q 021344 245 AALHCWPSPSNAVAEISRILRSGGVFVGT 273 (314)
Q Consensus 245 ~vl~h~~d~~~~l~~i~r~LkpGG~l~i~ 273 (314)
-.+---..|.-..+++.+.+|||++++=.
T Consensus 239 VLIpgakaPkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 239 VLIPGAKAPKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred EEecCCCCceehhHHHHHhcCCCcEEEEE
Confidence 55555567888899999999999998743
No 366
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=91.26 E-value=0.1 Score=31.84 Aligned_cols=37 Identities=16% Similarity=0.309 Sum_probs=23.2
Q ss_pred eeccCCCccchhc-CCCCccccccccCceecCCCCccc
Q 021344 61 FSCPICYEPLIRK-GPTGLTLGAIYRSGFKCRKCDKTY 97 (314)
Q Consensus 61 l~CP~C~~~l~~~-~~~~~~~~~i~~~~l~C~~C~~~~ 97 (314)
..||.|+...... ..+....++.+.-.+.|.+|++.|
T Consensus 1 ~~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~~w 38 (40)
T smart00440 1 APCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGHRW 38 (40)
T ss_pred CcCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCCEe
Confidence 3699999863221 111223455556688999999876
No 367
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=91.24 E-value=0.16 Score=45.23 Aligned_cols=104 Identities=18% Similarity=0.246 Sum_probs=74.5
Q ss_pred CCeEEEEcCcccHHHH-HHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc
Q 021344 167 GGLLVDVSCGSGLFSR-KFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (314)
Q Consensus 167 ~~~iLDiGcG~G~~~~-~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~ 245 (314)
+..|+|+=+|-|+|+. .+...+ ...|+++|.++..++..++.++.++ ...+...+.+|-... -++...|-|...
T Consensus 195 ~eviVDLYAGIGYFTlpflV~ag-Ak~V~A~EwNp~svEaLrR~~~~N~--V~~r~~i~~gd~R~~-~~~~~AdrVnLG- 269 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAG-AKTVFACEWNPWSVEALRRNAEANN--VMDRCRITEGDNRNP-KPRLRADRVNLG- 269 (351)
T ss_pred cchhhhhhcccceEEeehhhccC-ccEEEEEecCHHHHHHHHHHHHhcc--hHHHHHhhhcccccc-Cccccchheeec-
Confidence 5789999999999998 555555 4589999999999999999888765 345566666775543 345667777654
Q ss_pred hhccCCCHHHHHHHHHhhccc-Cc-EEEEEecccC
Q 021344 246 ALHCWPSPSNAVAEISRILRS-GG-VFVGTTFLRY 278 (314)
Q Consensus 246 vl~h~~d~~~~l~~i~r~Lkp-GG-~l~i~~~~~~ 278 (314)
-+|.-++-...+.++||| || ++-|.+....
T Consensus 270 ---LlPSse~~W~~A~k~Lk~eggsilHIHenV~~ 301 (351)
T KOG1227|consen 270 ---LLPSSEQGWPTAIKALKPEGGSILHIHENVKD 301 (351)
T ss_pred ---cccccccchHHHHHHhhhcCCcEEEEeccccc
Confidence 345555556667778887 44 6667665543
No 368
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=91.21 E-value=0.13 Score=39.63 Aligned_cols=30 Identities=7% Similarity=0.047 Sum_probs=23.2
Q ss_pred eeccCCCccchhcCCCCccccccccCceecCCCCccccCc
Q 021344 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (314)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~ 100 (314)
-.||.||+.++-... ....|+.||..|+..
T Consensus 10 r~Cp~cg~kFYDLnk----------~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 10 RICPNTGSKFYDLNR----------RPAVSPYTGEQFPPE 39 (129)
T ss_pred ccCCCcCccccccCC----------CCccCCCcCCccCcc
Confidence 369999999865442 578999999998544
No 369
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.13 E-value=0.11 Score=36.13 Aligned_cols=34 Identities=24% Similarity=0.587 Sum_probs=23.9
Q ss_pred eeeccCCCccchhcCCCCccccccccCceecCCCCccccCc
Q 021344 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (314)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~ 100 (314)
++.||+|+-++.-...++. ..-.|+.|+-+|..+
T Consensus 1 ~llCP~C~v~l~~~~rs~v-------EiD~CPrCrGVWLDr 34 (88)
T COG3809 1 MLLCPICGVELVMSVRSGV-------EIDYCPRCRGVWLDR 34 (88)
T ss_pred CcccCcCCceeeeeeecCc-------eeeeCCccccEeecc
Confidence 4679999999865443322 356799998887554
No 370
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=91.01 E-value=0.57 Score=47.23 Aligned_cols=108 Identities=17% Similarity=0.122 Sum_probs=63.1
Q ss_pred CCCeEEEEcCcccHHHHHHHHhC-------C-----CCeEEEEeCCH---HHHHHHH-----------HHHHh-----cC
Q 021344 166 QGGLLVDVSCGSGLFSRKFAKSG-------T-----YSGVVALDFSE---NMLRQCY-----------DFIKQ-----DN 214 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~l~~~~-------~-----~~~v~giD~s~---~~~~~a~-----------~~~~~-----~~ 214 (314)
+.-+|+|+|-|+|.......+.. + ..+++++|..+ ..+..+. +.... .+
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 34689999999999655444322 2 24789999644 2232222 11111 00
Q ss_pred C------CCCCCeEEEEecCCC-CCCCCCchhhheecchhccCCCH----HHHHHHHHhhcccCcEEEEEe
Q 021344 215 T------ILTSNLALVRADVCR-LPFASGFVDAVHAGAALHCWPSP----SNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 215 ~------~~~~~v~~~~~d~~~-lp~~~~~fD~V~~~~vl~h~~d~----~~~l~~i~r~LkpGG~l~i~~ 274 (314)
. ...-.+++..+|+.+ ++--...||+++... |.=-.|| ..+++.+.++++|||.+...+
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~-FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDG-FAPAKNPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCC-CCCccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 0 001245567777743 221224689998743 1212244 479999999999999997655
No 371
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=90.93 E-value=2.7 Score=38.98 Aligned_cols=100 Identities=17% Similarity=0.173 Sum_probs=60.8
Q ss_pred HhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEE-ec----CCC-C-C
Q 021344 161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-AD----VCR-L-P 232 (314)
Q Consensus 161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~-~d----~~~-l-p 232 (314)
.....++.+||-+|+|. |..+..+++.....+|+++|.++...+.+++. + .. ..+. .+ +.. + .
T Consensus 180 ~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~----G----a~-~~i~~~~~~~~~~~~v~~ 250 (368)
T TIGR02818 180 TAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL----G----AT-DCVNPNDYDKPIQEVIVE 250 (368)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----C----CC-eEEcccccchhHHHHHHH
Confidence 34456788999999876 77777777765333799999999988888652 1 11 1111 10 000 0 0
Q ss_pred CCCCchhhheecchhccCCCHHHHHHHHHhhcccC-cEEEEEec
Q 021344 233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF 275 (314)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpG-G~l~i~~~ 275 (314)
...+.+|+|+-. ...+ ..+.+..+.+++| |++++...
T Consensus 251 ~~~~g~d~vid~-----~G~~-~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 251 ITDGGVDYSFEC-----IGNV-NVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred HhCCCCCEEEEC-----CCCH-HHHHHHHHHhhcCCCeEEEEec
Confidence 112246766532 2233 3577788899886 99887664
No 372
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=90.80 E-value=0.14 Score=33.28 Aligned_cols=26 Identities=23% Similarity=0.686 Sum_probs=20.8
Q ss_pred eeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (314)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (314)
-.|++|+.++...+ ..+.|+.||..|
T Consensus 6 ~~C~~Cg~~~~~~d-----------DiVvCp~Cgapy 31 (54)
T PF14446_consen 6 CKCPVCGKKFKDGD-----------DIVVCPECGAPY 31 (54)
T ss_pred ccChhhCCcccCCC-----------CEEECCCCCCcc
Confidence 36999999986544 589999998776
No 373
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=90.80 E-value=0.1 Score=28.61 Aligned_cols=23 Identities=22% Similarity=0.541 Sum_probs=17.2
Q ss_pred eeccCCCccchhcCCCCccccccccCceecCCCCcc
Q 021344 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (314)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~ 96 (314)
..||.||..+.. +.-.|++||..
T Consensus 3 ~~Cp~Cg~~~~~-------------~~~fC~~CG~~ 25 (26)
T PF13248_consen 3 MFCPNCGAEIDP-------------DAKFCPNCGAK 25 (26)
T ss_pred CCCcccCCcCCc-------------ccccChhhCCC
Confidence 469999996532 56889999863
No 374
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.79 E-value=0.077 Score=40.44 Aligned_cols=44 Identities=23% Similarity=0.489 Sum_probs=29.1
Q ss_pred CCeeeccCCCccchhcCCC--CccccccccCceecCCCCccccCcc
Q 021344 58 GDLFSCPICYEPLIRKGPT--GLTLGAIYRSGFKCRKCDKTYSSKD 101 (314)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~--~~~~~~i~~~~l~C~~C~~~~~~~~ 101 (314)
..+.+||+|..+..-.... ....+.-++..-.|.+||..||..+
T Consensus 37 ati~qcp~csasirgd~~vegvlglg~dye~psfchncgs~fpwte 82 (160)
T COG4306 37 ATITQCPICSASIRGDYYVEGVLGLGGDYEPPSFCHNCGSRFPWTE 82 (160)
T ss_pred HHHhcCCccCCcccccceeeeeeccCCCCCCcchhhcCCCCCCcHH
Confidence 4688999999875322111 1234444556778999999998754
No 375
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=90.46 E-value=2.8 Score=38.29 Aligned_cols=99 Identities=13% Similarity=0.127 Sum_probs=59.4
Q ss_pred ccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC---C--CCCCC
Q 021344 163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR---L--PFASG 236 (314)
Q Consensus 163 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~---l--p~~~~ 236 (314)
...++.+||-.|+|. |..+..+++......+++++.++...+.+++. + . -.++..+-.. + .....
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----G----a-~~~i~~~~~~~~~~~~~~~~~ 227 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL----G----A-MQTFNSREMSAPQIQSVLREL 227 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----C----C-ceEecCcccCHHHHHHHhcCC
Confidence 345678999999876 77777777764333478999999888777542 1 1 1111111000 0 01123
Q ss_pred chh-hheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 237 FVD-AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 237 ~fD-~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
.+| +|+ +.... ...+.+..+.|++||.+++....
T Consensus 228 ~~d~~v~-----d~~G~-~~~~~~~~~~l~~~G~iv~~G~~ 262 (347)
T PRK10309 228 RFDQLIL-----ETAGV-PQTVELAIEIAGPRAQLALVGTL 262 (347)
T ss_pred CCCeEEE-----ECCCC-HHHHHHHHHHhhcCCEEEEEccC
Confidence 466 443 22333 34678888999999999987643
No 376
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=90.41 E-value=0.16 Score=28.37 Aligned_cols=22 Identities=27% Similarity=0.841 Sum_probs=11.1
Q ss_pred eccCCCccchhcCCCCccccccccCceecCC
Q 021344 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRK 92 (314)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~ 92 (314)
.||+|++++.+.... -.++|.+
T Consensus 1 ~CP~C~s~l~~~~~e---------v~~~C~N 22 (28)
T PF03119_consen 1 TCPVCGSKLVREEGE---------VDIRCPN 22 (28)
T ss_dssp B-TTT--BEEE-CCT---------TCEEE--
T ss_pred CcCCCCCEeEcCCCC---------EeEECCC
Confidence 499999999864432 4677764
No 377
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=90.40 E-value=0.29 Score=31.52 Aligned_cols=34 Identities=32% Similarity=0.588 Sum_probs=23.0
Q ss_pred eccCCCccchhcCCCCccccccccCceecCCCCccccCccc
Q 021344 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDN 102 (314)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g 102 (314)
-||.||+-+...... ....+.|+.||+.+.+...
T Consensus 2 FCp~Cg~~l~~~~~~-------~~~~~vC~~Cg~~~~~~~~ 35 (52)
T smart00661 2 FCPKCGNMLIPKEGK-------EKRRFVCRKCGYEEPIEQK 35 (52)
T ss_pred CCCCCCCccccccCC-------CCCEEECCcCCCeEECCCc
Confidence 399999977553321 1137899999988766544
No 378
>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....
Probab=90.38 E-value=0.11 Score=37.60 Aligned_cols=30 Identities=27% Similarity=0.821 Sum_probs=21.7
Q ss_pred CeeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (314)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (314)
.-+.||.|+....... ..+++.|..|+..|
T Consensus 34 ~ky~Cp~Cgk~~vkR~---------a~GIW~C~~C~~~~ 63 (90)
T PF01780_consen 34 AKYTCPFCGKTSVKRV---------ATGIWKCKKCGKKF 63 (90)
T ss_dssp S-BEESSSSSSEEEEE---------ETTEEEETTTTEEE
T ss_pred CCCcCCCCCCceeEEe---------eeEEeecCCCCCEE
Confidence 3577999999764422 22789999998776
No 379
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=90.35 E-value=3.1 Score=37.63 Aligned_cols=98 Identities=11% Similarity=-0.014 Sum_probs=60.6
Q ss_pred HHhccCCCCeEEEEcC--cccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC-CCC-----
Q 021344 160 EYFKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRL----- 231 (314)
Q Consensus 160 ~~l~~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~-~~l----- 231 (314)
......++.+||=.|. |.|..+..+++.. +.++++++-+++..+.+++. + .. .++..+- ...
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~~l----G----a~-~vi~~~~~~~~~~~~~ 201 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLKKL----G----FD-VAFNYKTVKSLEETLK 201 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc----C----CC-EEEeccccccHHHHHH
Confidence 3445567889999984 4588888887764 34899999998887777651 1 11 1111111 010
Q ss_pred CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
....+.+|+|+-. +.. ..+....+.|++||+++...
T Consensus 202 ~~~~~gvdvv~d~-----~G~--~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 202 KASPDGYDCYFDN-----VGG--EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred HhCCCCeEEEEEC-----CCH--HHHHHHHHHhCcCcEEEEec
Confidence 0112357777642 222 34688889999999998764
No 380
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=90.19 E-value=4.5 Score=37.97 Aligned_cols=105 Identities=18% Similarity=0.198 Sum_probs=62.5
Q ss_pred hccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC-CCCC------C
Q 021344 162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLP------F 233 (314)
Q Consensus 162 l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~-~~lp------~ 233 (314)
....++.+||-.|+|. |..+..+++......++.+|.++..++.+++. .+..+...- .... .
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----------Ga~~v~~~~~~~~~~~v~~~~ 250 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----------GCETVDLSKDATLPEQIEQIL 250 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----------CCeEEecCCcccHHHHHHHHc
Confidence 3455678888888876 77777777764233466778888888888762 122221110 0100 1
Q ss_pred CCCchhhheecchhcc--------CCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 234 ASGFVDAVHAGAALHC--------WPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 234 ~~~~fD~V~~~~vl~h--------~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
....+|+|+-.-.-.. -.++...+++..+.+++||.+++....
T Consensus 251 ~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 251 GEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred CCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 1235787764322110 001235789999999999999987654
No 381
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=89.85 E-value=0.28 Score=30.65 Aligned_cols=28 Identities=21% Similarity=0.535 Sum_probs=21.5
Q ss_pred eeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (314)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (314)
.+.|..||.+..... .+.++|+.||+.-
T Consensus 2 ~Y~C~~Cg~~~~~~~----------~~~irC~~CG~rI 29 (44)
T smart00659 2 IYICGECGRENEIKS----------KDVVRCRECGYRI 29 (44)
T ss_pred EEECCCCCCEeecCC----------CCceECCCCCceE
Confidence 478999999876532 2689999998764
No 382
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=89.66 E-value=3.2 Score=37.66 Aligned_cols=94 Identities=20% Similarity=0.278 Sum_probs=58.5
Q ss_pred CCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEec---CCCCCCCCCchhhh
Q 021344 166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD---VCRLPFASGFVDAV 241 (314)
Q Consensus 166 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d---~~~lp~~~~~fD~V 241 (314)
++.+||..|+|. |..+..+++.....++++++.++...+.+++. + . -.++..+ +..+....+.+|+|
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g----~-~~vi~~~~~~~~~~~~~~~~vd~v 235 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----G----A-DETVNLARDPLAAYAADKGDFDVV 235 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----C----C-CEEEcCCchhhhhhhccCCCccEE
Confidence 678899898876 77777777764222789999988877766552 1 1 1112111 11111122358888
Q ss_pred eecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 242 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 242 ~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
+.... . ...++++.+.|+++|+++...
T Consensus 236 ld~~g-----~-~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 236 FEASG-----A-PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred EECCC-----C-HHHHHHHHHHHhcCCEEEEEe
Confidence 75432 1 235788899999999998765
No 383
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=89.66 E-value=4.5 Score=36.50 Aligned_cols=100 Identities=15% Similarity=0.120 Sum_probs=60.8
Q ss_pred HhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC----CCCC
Q 021344 161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFAS 235 (314)
Q Consensus 161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l----p~~~ 235 (314)
.....++.+||.+|+|. |..+..+++......+++++.++...+.+++. + .. .++..+-... ....
T Consensus 154 ~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g----~~-~~~~~~~~~~~~~~~~~~ 224 (334)
T cd08234 154 LLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----G----AT-ETVDPSREDPEAQKEDNP 224 (334)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----C----Ce-EEecCCCCCHHHHHHhcC
Confidence 34456788999998764 66666666664222389999998887777542 1 11 2222111110 0123
Q ss_pred CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344 236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
+.+|+|+.... ....+.++.+.|+++|.++....
T Consensus 225 ~~vd~v~~~~~------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 225 YGFDVVIEATG------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred CCCcEEEECCC------ChHHHHHHHHHHhcCCEEEEEec
Confidence 46888875321 13568888999999999987653
No 384
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=89.64 E-value=6.9 Score=33.35 Aligned_cols=112 Identities=14% Similarity=0.077 Sum_probs=66.3
Q ss_pred HHHHHHhccCCCCeEEEEcCccc----HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCC-C
Q 021344 156 KMAQEYFKSAQGGLLVDVSCGSG----LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC-R 230 (314)
Q Consensus 156 ~~l~~~l~~~~~~~iLDiGcG~G----~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~-~ 230 (314)
+++..+..-.+.+.|+++.++.| .++...+.+..+.+++.|-+++..+...++.+...+ ...-++|+.++.. .
T Consensus 31 EfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~--~~~~vEfvvg~~~e~ 108 (218)
T PF07279_consen 31 EFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAG--LSDVVEFVVGEAPEE 108 (218)
T ss_pred HHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcc--ccccceEEecCCHHH
Confidence 44444444445567999966643 233444444445599999999988888888887665 3355798888853 2
Q ss_pred CCCCCCchhhheecchhccCCCHHHHHHHHHhhc--ccCcEEEEEec
Q 021344 231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRIL--RSGGVFVGTTF 275 (314)
Q Consensus 231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~L--kpGG~l~i~~~ 275 (314)
+-..-...|+++...- ...+.+++.+++ .|.|-+++...
T Consensus 109 ~~~~~~~iDF~vVDc~------~~d~~~~vl~~~~~~~~GaVVV~~N 149 (218)
T PF07279_consen 109 VMPGLKGIDFVVVDCK------REDFAARVLRAAKLSPRGAVVVCYN 149 (218)
T ss_pred HHhhccCCCEEEEeCC------chhHHHHHHHHhccCCCceEEEEec
Confidence 2111235788776432 223333444444 45577666554
No 385
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=89.44 E-value=1.1 Score=39.40 Aligned_cols=87 Identities=21% Similarity=0.220 Sum_probs=59.0
Q ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (314)
Q Consensus 165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~ 244 (314)
.++...+|+|...|.++..|-+++- .|+++|..+-+-... ....|+....|-.+..-.....|-.+|.
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~m--~V~aVDng~ma~sL~----------dtg~v~h~r~DGfk~~P~r~~idWmVCD 277 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRNM--RVYAVDNGPMAQSLM----------DTGQVTHLREDGFKFRPTRSNIDWMVCD 277 (358)
T ss_pred cCCceeeecccCCCccchhhhhcce--EEEEeccchhhhhhh----------cccceeeeeccCcccccCCCCCceEEee
Confidence 4688999999999999999999876 999999866332221 1356777777776643334557777765
Q ss_pred chhccCCCHHHHHHHHHhhcccC
Q 021344 245 AALHCWPSPSNAVAEISRILRSG 267 (314)
Q Consensus 245 ~vl~h~~d~~~~l~~i~r~LkpG 267 (314)
.| ..|.++-.-+...|..|
T Consensus 278 mV----EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 278 MV----EKPARVAALIAKWLVNG 296 (358)
T ss_pred hh----cCcHHHHHHHHHHHHcc
Confidence 54 45655555555555433
No 386
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=89.39 E-value=4.5 Score=37.44 Aligned_cols=101 Identities=17% Similarity=0.164 Sum_probs=61.3
Q ss_pred HhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCC--CC-----C
Q 021344 161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC--RL-----P 232 (314)
Q Consensus 161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~--~l-----p 232 (314)
.....++.+||-+|+|. |..+..+++.....+++++|.++...+.+++. + .. .++...-. .. .
T Consensus 181 ~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~l----G----a~-~~i~~~~~~~~~~~~v~~ 251 (368)
T cd08300 181 TAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKF----G----AT-DCVNPKDHDKPIQQVLVE 251 (368)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----C----CC-EEEcccccchHHHHHHHH
Confidence 34456788999999875 67777777764323699999999988877651 1 11 11211100 00 0
Q ss_pred CCCCchhhheecchhccCCCHHHHHHHHHhhcccC-cEEEEEecc
Q 021344 233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTFL 276 (314)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpG-G~l~i~~~~ 276 (314)
...+.+|+|+-. +.. ...+.+..+.|+++ |++++....
T Consensus 252 ~~~~g~d~vid~-----~g~-~~~~~~a~~~l~~~~G~~v~~g~~ 290 (368)
T cd08300 252 MTDGGVDYTFEC-----IGN-VKVMRAALEACHKGWGTSVIIGVA 290 (368)
T ss_pred HhCCCCcEEEEC-----CCC-hHHHHHHHHhhccCCCeEEEEccC
Confidence 112357777642 222 24577788899987 998876543
No 387
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=89.28 E-value=4.2 Score=37.53 Aligned_cols=99 Identities=19% Similarity=0.220 Sum_probs=59.7
Q ss_pred hccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-------CC
Q 021344 162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-------PF 233 (314)
Q Consensus 162 l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-------p~ 233 (314)
....++.+||-+|+|. |..+..+++.....+|+++|.++...+.+++. + .. .++...-... ..
T Consensus 180 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~----g---a~--~~i~~~~~~~~~~~~~~~~ 250 (365)
T cd08277 180 AKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF----G---AT--DFINPKDSDKPVSEVIREM 250 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----C---CC--cEeccccccchHHHHHHHH
Confidence 4456788999999875 66777777765333799999999888887652 1 01 1111100000 01
Q ss_pred CCCchhhheecchhccCCCHHHHHHHHHhhcccC-cEEEEEec
Q 021344 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF 275 (314)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpG-G~l~i~~~ 275 (314)
..+.+|+|+-. ... ...+.+..+.|+++ |.+++...
T Consensus 251 ~~~g~d~vid~-----~g~-~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 251 TGGGVDYSFEC-----TGN-ADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred hCCCCCEEEEC-----CCC-hHHHHHHHHhcccCCCEEEEEcC
Confidence 12357777642 222 34577888899886 99987654
No 388
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=89.23 E-value=0.2 Score=34.41 Aligned_cols=26 Identities=35% Similarity=0.945 Sum_probs=15.6
Q ss_pred eeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (314)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (314)
+.||.|+++|.... +.+.|..|+..|
T Consensus 2 ~~CP~C~~~L~~~~-----------~~~~C~~C~~~~ 27 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-----------GHYHCEACQKDY 27 (70)
T ss_dssp -B-SSS-SBEEEET-----------TEEEETTT--EE
T ss_pred CcCCCCCCccEEeC-----------CEEECccccccc
Confidence 46999999986644 467777777665
No 389
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=89.17 E-value=4.9 Score=36.24 Aligned_cols=97 Identities=19% Similarity=0.137 Sum_probs=59.4
Q ss_pred hccCCCCeEEEEcCc-ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-CCCCchh
Q 021344 162 FKSAQGGLLVDVSCG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVD 239 (314)
Q Consensus 162 l~~~~~~~iLDiGcG-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-~~~~~fD 239 (314)
....++.+||-+|+| .|..+..+++.. +.++++++.++...+.+++. . .. .++...-.... ...+.+|
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~-g-------~~-~~~~~~~~~~~~~~~~~~d 227 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARKL-G-------AD-EVVDSGAELDEQAAAGGAD 227 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHh-C-------Cc-EEeccCCcchHHhccCCCC
Confidence 445667889999987 477776776663 34899999999887777541 1 01 11111100000 0123588
Q ss_pred hheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 240 ~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
+|+.... . ...+..+.+.|+++|.++...
T Consensus 228 ~vi~~~~-----~-~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 228 VILVTVV-----S-GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred EEEECCC-----c-HHHHHHHHHhcccCCEEEEEC
Confidence 7775321 1 245788889999999998765
No 390
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=88.87 E-value=1.3 Score=39.52 Aligned_cols=93 Identities=15% Similarity=0.163 Sum_probs=60.7
Q ss_pred CCeEEEEcCcc--cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEec-CCCCCCCCCchhhhee
Q 021344 167 GGLLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD-VCRLPFASGFVDAVHA 243 (314)
Q Consensus 167 ~~~iLDiGcG~--G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d-~~~lp~~~~~fD~V~~ 243 (314)
..+|+=+|.|- |.+++.+.+.+....++|.|.+...+..+.+ .++..-..+ .... .....|+|+.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----------lgv~d~~~~~~~~~--~~~~aD~Viv 70 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----------LGVIDELTVAGLAE--AAAEADLVIV 70 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----------cCcccccccchhhh--hcccCCEEEE
Confidence 35788889886 7788889999987778999999988877765 222222111 1011 1345798887
Q ss_pred cchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 244 GAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 244 ~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
.--+.. ...+++++...||+|..+.=.+
T Consensus 71 avPi~~---~~~~l~~l~~~l~~g~iv~Dv~ 98 (279)
T COG0287 71 AVPIEA---TEEVLKELAPHLKKGAIVTDVG 98 (279)
T ss_pred eccHHH---HHHHHHHhcccCCCCCEEEecc
Confidence 543332 3567888888888887764333
No 391
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=88.78 E-value=3.7 Score=39.01 Aligned_cols=89 Identities=10% Similarity=0.135 Sum_probs=55.1
Q ss_pred CCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344 166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (314)
Q Consensus 166 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~ 244 (314)
.+++|+-+|+|. |......++.. +.+|+.+|.++.....+.. ..+... ++.+. -..+|+|+..
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp~ra~~A~~----------~G~~v~--~l~ea---l~~aDVVI~a 274 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDPICALQAAM----------DGFRVM--TMEEA---AELGDIFVTA 274 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCchhhHHHHh----------cCCEec--CHHHH---HhCCCEEEEC
Confidence 688999999997 65544444432 3499999999866544433 122221 22211 1257888764
Q ss_pred chhccCCCHHHHHH-HHHhhcccCcEEEEEecc
Q 021344 245 AALHCWPSPSNAVA-EISRILRSGGVFVGTTFL 276 (314)
Q Consensus 245 ~vl~h~~d~~~~l~-~i~r~LkpGG~l~i~~~~ 276 (314)
- .++ ..+. +....+|+|++++.....
T Consensus 275 T-----G~~-~vI~~~~~~~mK~GailiNvG~~ 301 (425)
T PRK05476 275 T-----GNK-DVITAEHMEAMKDGAILANIGHF 301 (425)
T ss_pred C-----CCH-HHHHHHHHhcCCCCCEEEEcCCC
Confidence 2 233 3454 688899999999887744
No 392
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=88.73 E-value=0.37 Score=27.79 Aligned_cols=27 Identities=19% Similarity=0.496 Sum_probs=18.4
Q ss_pred eeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (314)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (314)
+.|..|+........ ..++|+.||+..
T Consensus 1 Y~C~~Cg~~~~~~~~----------~~irC~~CG~RI 27 (32)
T PF03604_consen 1 YICGECGAEVELKPG----------DPIRCPECGHRI 27 (32)
T ss_dssp EBESSSSSSE-BSTS----------STSSBSSSS-SE
T ss_pred CCCCcCCCeeEcCCC----------CcEECCcCCCeE
Confidence 468999998764332 578999998753
No 393
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=88.71 E-value=0.18 Score=40.77 Aligned_cols=40 Identities=25% Similarity=0.578 Sum_probs=24.0
Q ss_pred CCeeeccCCCccchhcCCCCcc------ccccccCceecCCCCccc
Q 021344 58 GDLFSCPICYEPLIRKGPTGLT------LGAIYRSGFKCRKCDKTY 97 (314)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~------~~~i~~~~l~C~~C~~~~ 97 (314)
...-.||.|+++|......... .-......++|++||+.|
T Consensus 95 ~e~~RCp~CN~~L~~vs~eev~~~Vp~~~~~~~~~f~~C~~CgkiY 140 (165)
T COG1656 95 PEFSRCPECNGELEKVSREEVKEKVPEKVYRNYEEFYRCPKCGKIY 140 (165)
T ss_pred cccccCcccCCEeccCcHHHHhhccchhhhhcccceeECCCCcccc
Confidence 4466799999988553321100 011123467899999886
No 394
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=88.69 E-value=3.9 Score=38.57 Aligned_cols=90 Identities=10% Similarity=0.058 Sum_probs=55.6
Q ss_pred CCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhee
Q 021344 165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 243 (314)
Q Consensus 165 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~ 243 (314)
..+++|+-+|+|. |......++.. +.+|+++|.++.....+.. ...... +..+. . ...|+|+.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp~r~~~A~~----------~G~~v~--~leea-l--~~aDVVIt 256 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDPIRALEAAM----------DGFRVM--TMEEA-A--KIGDIFIT 256 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCChhhHHHHHh----------cCCEeC--CHHHH-H--hcCCEEEE
Confidence 4688999999998 76655555543 4589999998865444433 122222 22111 1 24688765
Q ss_pred cchhccCCCHHHHHH-HHHhhcccCcEEEEEecc
Q 021344 244 GAALHCWPSPSNAVA-EISRILRSGGVFVGTTFL 276 (314)
Q Consensus 244 ~~vl~h~~d~~~~l~-~i~r~LkpGG~l~i~~~~ 276 (314)
.- .. ...+. +....+|+|++++.....
T Consensus 257 aT-----G~-~~vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 257 AT-----GN-KDVIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred CC-----CC-HHHHHHHHHhcCCCCcEEEEECCC
Confidence 32 22 33444 478899999999887643
No 395
>PF14353 CpXC: CpXC protein
Probab=88.68 E-value=0.2 Score=39.15 Aligned_cols=42 Identities=17% Similarity=0.319 Sum_probs=24.6
Q ss_pred eeccCCCccchhcCCCCcccc----------ccccCceecCCCCccccCccc
Q 021344 61 FSCPICYEPLIRKGPTGLTLG----------AIYRSGFKCRKCDKTYSSKDN 102 (314)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~----------~i~~~~l~C~~C~~~~~~~~g 102 (314)
++||.|+...........+.. ...-..+.|++||+.+...-.
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~~p 53 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLEYP 53 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecCCC
Confidence 579999997544332222111 111235789999999865433
No 396
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=88.65 E-value=7.1 Score=36.03 Aligned_cols=101 Identities=19% Similarity=0.175 Sum_probs=60.4
Q ss_pred HhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC--CCC-----C
Q 021344 161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CRL-----P 232 (314)
Q Consensus 161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~--~~l-----p 232 (314)
.....++.+||-+|+|. |.++..+++.....+++++|.++...+.+++. + . ..++..+- ..+ .
T Consensus 182 ~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~----G----a-~~~i~~~~~~~~~~~~v~~ 252 (369)
T cd08301 182 VAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKF----G----V-TEFVNPKDHDKPVQEVIAE 252 (369)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----C----C-ceEEcccccchhHHHHHHH
Confidence 34456788999999875 66777777765333799999999888887651 1 1 11121110 000 0
Q ss_pred CCCCchhhheecchhccCCCHHHHHHHHHhhcccC-cEEEEEecc
Q 021344 233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTFL 276 (314)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpG-G~l~i~~~~ 276 (314)
...+.+|+|+-. +.. ...+....+.+++| |++++....
T Consensus 253 ~~~~~~d~vid~-----~G~-~~~~~~~~~~~~~~~g~~v~~g~~ 291 (369)
T cd08301 253 MTGGGVDYSFEC-----TGN-IDAMISAFECVHDGWGVTVLLGVP 291 (369)
T ss_pred HhCCCCCEEEEC-----CCC-hHHHHHHHHHhhcCCCEEEEECcC
Confidence 112246666532 222 34567778889996 999876643
No 397
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=88.59 E-value=0.22 Score=29.45 Aligned_cols=31 Identities=26% Similarity=0.449 Sum_probs=19.2
Q ss_pred eccCCCccchhcCCCCccccccccCceecCCCCccccCc
Q 021344 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (314)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~ 100 (314)
=||.|++-|...... . ....|++|+..+++.
T Consensus 3 FCp~C~nlL~p~~~~-------~-~~~~C~~C~Y~~~~~ 33 (35)
T PF02150_consen 3 FCPECGNLLYPKEDK-------E-KRVACRTCGYEEPIS 33 (35)
T ss_dssp BETTTTSBEEEEEET-------T-TTEEESSSS-EEE-S
T ss_pred eCCCCCccceEcCCC-------c-cCcCCCCCCCccCCC
Confidence 399999987653321 1 122899998887654
No 398
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=88.58 E-value=0.34 Score=31.32 Aligned_cols=36 Identities=22% Similarity=0.375 Sum_probs=22.0
Q ss_pred CeeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (314)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (314)
..+.||+||+.-...-. .+.....-.+.|+.|.+..
T Consensus 3 ~Wi~CP~CgnKTR~kir---~DT~LkNfPlyCpKCK~Et 38 (55)
T PF14205_consen 3 EWILCPICGNKTRLKIR---EDTVLKNFPLYCPKCKQET 38 (55)
T ss_pred eEEECCCCCCccceeee---cCceeccccccCCCCCceE
Confidence 57889999986422111 1122223468999997765
No 399
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=88.49 E-value=0.89 Score=42.47 Aligned_cols=62 Identities=10% Similarity=0.105 Sum_probs=51.8
Q ss_pred CCCeEEEEecCCCCC--CCCCchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEecccCC
Q 021344 218 TSNLALVRADVCRLP--FASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYT 279 (314)
Q Consensus 218 ~~~v~~~~~d~~~lp--~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~~~~ 279 (314)
.++++++.+++.+.- .+++++|.++....++++++. .+.++++.+.++|||+++.-+....+
T Consensus 274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 388999999987632 457899999999999999765 47899999999999999998877654
No 400
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=88.32 E-value=0.31 Score=29.85 Aligned_cols=24 Identities=33% Similarity=0.771 Sum_probs=18.1
Q ss_pred eeccCCCccchhcCCCCccccccccCceecCCCC
Q 021344 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCD 94 (314)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~ 94 (314)
-.||.|+.++.+... +...|..|+
T Consensus 18 ~~Cp~C~~PL~~~k~----------g~~~Cv~C~ 41 (41)
T PF06677_consen 18 EHCPDCGTPLMRDKD----------GKIYCVSCG 41 (41)
T ss_pred CccCCCCCeeEEecC----------CCEECCCCC
Confidence 359999999987322 568899884
No 401
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=88.28 E-value=0.23 Score=32.73 Aligned_cols=36 Identities=25% Similarity=0.470 Sum_probs=20.2
Q ss_pred CCCeeeccCCCccchhcCCCCccccccccCceecCCCCcc
Q 021344 57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (314)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~ 96 (314)
....|.||.||...+..-..-- .....++|++||..
T Consensus 24 ~~v~F~CPnCGe~~I~Rc~~CR----k~g~~Y~Cp~CGF~ 59 (61)
T COG2888 24 TAVKFPCPNCGEVEIYRCAKCR----KLGNPYRCPKCGFE 59 (61)
T ss_pred ceeEeeCCCCCceeeehhhhHH----HcCCceECCCcCcc
Confidence 4457889999965432111000 01146888888754
No 402
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=88.26 E-value=2.4 Score=38.26 Aligned_cols=113 Identities=13% Similarity=0.127 Sum_probs=74.9
Q ss_pred HHHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----
Q 021344 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---- 232 (314)
Q Consensus 158 l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp---- 232 (314)
+.+.+... -..|+-+|||-= ++...-..+ ...|+-+|. |+.++.=++.+++.+.......+++..|+.+..
T Consensus 85 ~~~~~~~g-~~qvViLgaGLD--TRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~ 160 (297)
T COG3315 85 VRAALDAG-IRQVVILGAGLD--TRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQA 160 (297)
T ss_pred HHHHHHhc-ccEEEEeccccc--cceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHH
Confidence 33444443 568999999753 333332333 356777775 677777777777765433447999999998432
Q ss_pred CCCCchh-----hheecchhccCCCH--HHHHHHHHhhcccCcEEEEEe
Q 021344 233 FASGFVD-----AVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 233 ~~~~~fD-----~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~ 274 (314)
+....|| ++++-+++.+++.. .++|+.|.....||-.++...
T Consensus 161 L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 161 LAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred HHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEec
Confidence 2223344 67788888888754 478999999988888887765
No 403
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=88.22 E-value=6.4 Score=35.44 Aligned_cols=95 Identities=19% Similarity=0.120 Sum_probs=58.4
Q ss_pred HHhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCch
Q 021344 160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV 238 (314)
Q Consensus 160 ~~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~f 238 (314)
......++.+||-.|+|. |..+..+++.. +.+++.++-++...+.+++ + .+.... +.... ..+.+
T Consensus 161 ~~~~~~~~~~vlV~g~g~vg~~~~~la~~~-g~~v~~~~~~~~~~~~~~~-~---------g~~~~~-~~~~~--~~~~v 226 (329)
T cd08298 161 KLAGLKPGQRLGLYGFGASAHLALQIARYQ-GAEVFAFTRSGEHQELARE-L---------GADWAG-DSDDL--PPEPL 226 (329)
T ss_pred HhhCCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEcCChHHHHHHHH-h---------CCcEEe-ccCcc--CCCcc
Confidence 344456677888888765 55555555553 3589999988877766644 1 122111 11111 23458
Q ss_pred hhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 239 D~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
|+++... . ....+.++.+.|+++|.++...
T Consensus 227 D~vi~~~-----~-~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 227 DAAIIFA-----P-VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred cEEEEcC-----C-cHHHHHHHHHHhhcCCEEEEEc
Confidence 8776421 1 1246888999999999999765
No 404
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=88.07 E-value=3 Score=38.55 Aligned_cols=96 Identities=17% Similarity=0.132 Sum_probs=54.5
Q ss_pred cCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEe--cCCCCCCCCCchhh
Q 021344 164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA--DVCRLPFASGFVDA 240 (314)
Q Consensus 164 ~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~--d~~~lp~~~~~fD~ 240 (314)
..++.+||-.|+|. |.++..+++.. +.++++++.+......+.+. .+ ++.+.. +...+.-..+.+|+
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~~~~~---~G------a~~vi~~~~~~~~~~~~~~~D~ 250 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKEDEAINR---LG------ADSFLVSTDPEKMKAAIGTMDY 250 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhhhHHHh---CC------CcEEEcCCCHHHHHhhcCCCCE
Confidence 34678898899886 77777777764 34788888776543322221 11 111110 10000000123666
Q ss_pred heecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344 241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 241 V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
|+- ....+ ..+.+..+.|++||.++....
T Consensus 251 vid-----~~g~~-~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 251 IID-----TVSAV-HALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred EEE-----CCCCH-HHHHHHHHHhcCCcEEEEeCC
Confidence 663 22333 357788899999999987653
No 405
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=88.03 E-value=5.9 Score=36.30 Aligned_cols=101 Identities=20% Similarity=0.246 Sum_probs=60.2
Q ss_pred hccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--------
Q 021344 162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------- 232 (314)
Q Consensus 162 l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-------- 232 (314)
....++.+||-+|+|. |..+..+++.. +.+++++|.++..++.+++. + ++.+. +..+..
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~~----G------a~~~i-~~~~~~~~~~~~~~ 229 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKGF----G------ADLTL-NPKDKSAREVKKLI 229 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHh----C------CceEe-cCccccHHHHHHHH
Confidence 4456788999999976 77777777764 34899999999988888652 1 11111 111100
Q ss_pred --C-CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 233 --F-ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 233 --~-~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
+ ....+|.. ...+++....+ ..++...+.|++||++++....
T Consensus 230 ~~~t~~~g~d~~-~d~v~d~~g~~-~~~~~~~~~l~~~G~iv~~G~~ 274 (349)
T TIGR03201 230 KAFAKARGLRST-GWKIFECSGSK-PGQESALSLLSHGGTLVVVGYT 274 (349)
T ss_pred HhhcccCCCCCC-cCEEEECCCCh-HHHHHHHHHHhcCCeEEEECcC
Confidence 0 11234410 00123333333 4577778899999999887643
No 406
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=87.71 E-value=6.8 Score=35.81 Aligned_cols=99 Identities=15% Similarity=0.228 Sum_probs=60.7
Q ss_pred hccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-----CC-C
Q 021344 162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PF-A 234 (314)
Q Consensus 162 l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-----p~-~ 234 (314)
....++.+||-.|+|. |..+..+++......++++|.++...+.+++. + . -.++..+-... .+ .
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~----g----~-~~~v~~~~~~~~~~i~~~~~ 232 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY----G----A-TDIVDYKNGDVVEQILKLTG 232 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----C----C-ceEecCCCCCHHHHHHHHhC
Confidence 3455688899888875 67777777764333699999998877777651 1 1 11121111110 01 1
Q ss_pred CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
...+|+|+... .. ...+.++.+.|+++|+++....
T Consensus 233 ~~~~d~vld~~-----g~-~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 233 GKGVDAVIIAG-----GG-QDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred CCCCcEEEECC-----CC-HHHHHHHHHHhhcCCEEEEecc
Confidence 23578777422 12 2467889999999999986543
No 407
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=87.67 E-value=5.3 Score=34.97 Aligned_cols=96 Identities=19% Similarity=0.175 Sum_probs=58.9
Q ss_pred hccCCCCeEEEEcCcc-cHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchh
Q 021344 162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD 239 (314)
Q Consensus 162 l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD 239 (314)
....++.++|-.|+|. |..+..+++... .+ +++++.++...+.+++.- . ...+ +.. .........+|
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g-~~~vi~~~~~~~~~~~~~~~g-~-----~~~~--~~~--~~~~~~~~~~d 161 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAG-AREVVGVDPDAARRELAEALG-P-----ADPV--AAD--TADEIGGRGAD 161 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEECCCHHHHHHHHHcC-C-----Cccc--ccc--chhhhcCCCCC
Confidence 4456788898888876 667666666642 35 999999988877666521 0 0111 100 00011234588
Q ss_pred hheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 240 ~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
+|+.... ....+....+.|+++|.++...
T Consensus 162 ~vl~~~~------~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 162 VVIEASG------SPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred EEEEccC------ChHHHHHHHHHhcCCcEEEEEe
Confidence 8875321 1335788889999999998654
No 408
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.58 E-value=7.2 Score=35.35 Aligned_cols=102 Identities=20% Similarity=0.263 Sum_probs=65.0
Q ss_pred HhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEe-cCCCCC------
Q 021344 161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLP------ 232 (314)
Q Consensus 161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~-d~~~lp------ 232 (314)
..+..++.++.-+|+|. |.....-++....++++|+|++++-.+.|++. .-.+++.- |... |
T Consensus 187 ~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f---------GaTe~iNp~d~~~-~i~evi~ 256 (375)
T KOG0022|consen 187 TAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF---------GATEFINPKDLKK-PIQEVII 256 (375)
T ss_pred hcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc---------CcceecChhhccc-cHHHHHH
Confidence 34567889999999997 66666656654467999999999999999873 22233322 2222 2
Q ss_pred -CCCCchhhheecchhccCCCHHHHHHHHHhhcccC-cEEEEEecccC
Q 021344 233 -FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTFLRY 278 (314)
Q Consensus 233 -~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpG-G~l~i~~~~~~ 278 (314)
..++.+|.- +|.+.+++ .+++.....+.| |.-++......
T Consensus 257 EmTdgGvDys-----fEc~G~~~-~m~~al~s~h~GwG~sv~iGv~~~ 298 (375)
T KOG0022|consen 257 EMTDGGVDYS-----FECIGNVS-TMRAALESCHKGWGKSVVIGVAAA 298 (375)
T ss_pred HHhcCCceEE-----EEecCCHH-HHHHHHHHhhcCCCeEEEEEecCC
Confidence 123444433 44444554 466666777788 88777665543
No 409
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=87.49 E-value=7.4 Score=34.94 Aligned_cols=98 Identities=14% Similarity=0.060 Sum_probs=60.9
Q ss_pred HHhccCCCCeEEEEcC--cccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-----C
Q 021344 160 EYFKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----P 232 (314)
Q Consensus 160 ~~l~~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-----p 232 (314)
......++.+||-.|. |.|..+..+++.. +.++++++-++...+.+++. + . -.++...-... .
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~~----G----a-~~vi~~~~~~~~~~v~~ 206 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKEL----G----F-DAVFNYKTVSLEEALKE 206 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc----C----C-CEEEeCCCccHHHHHHH
Confidence 3444567889998884 4477888787774 44899999988887777661 1 1 11221111111 0
Q ss_pred CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
...+.+|+|+-.- . ...+....+.|+++|.++...
T Consensus 207 ~~~~gvd~vld~~-----g--~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 207 AAPDGIDCYFDNV-----G--GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred HCCCCcEEEEECC-----C--HHHHHHHHHhhccCCEEEEEc
Confidence 1123577776432 2 245788899999999998654
No 410
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=87.43 E-value=6.3 Score=35.35 Aligned_cols=95 Identities=17% Similarity=0.128 Sum_probs=58.8
Q ss_pred HhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchh
Q 021344 161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD 239 (314)
Q Consensus 161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD 239 (314)
.....++.+||-.|+|. |..+..+++.. +.++++++.+++..+.+++ + + +.... +.... ...+.+|
T Consensus 150 ~~~~~~g~~vlV~g~g~vg~~~~q~a~~~-G~~vi~~~~~~~~~~~~~~-~---g------~~~~~-~~~~~-~~~~~~d 216 (319)
T cd08242 150 QVPITPGDKVAVLGDGKLGLLIAQVLALT-GPDVVLVGRHSEKLALARR-L---G------VETVL-PDEAE-SEGGGFD 216 (319)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH-c---C------CcEEe-Ccccc-ccCCCCC
Confidence 34455678899888764 55555555553 3379999999888887776 2 1 11111 11111 2335688
Q ss_pred hheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 240 ~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
+|+-... . ...+....+.|+++|.++...
T Consensus 217 ~vid~~g-----~-~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 217 VVVEATG-----S-PSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred EEEECCC-----C-hHHHHHHHHHhhcCCEEEEEc
Confidence 8875321 1 345778888999999998743
No 411
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=87.40 E-value=2.3 Score=37.50 Aligned_cols=73 Identities=21% Similarity=0.214 Sum_probs=46.7
Q ss_pred HHHHHhccCCCCeEEEEcCcccHHHHHHHHhC-----CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-----TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (314)
Q Consensus 157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-----~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l 231 (314)
.+.+.-...+...++|+|||.|.++.+++... ....++.||-...-. .+-+++.... ....+.=+..|+.++
T Consensus 9 ~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~--~~~~~~R~riDI~dl 85 (259)
T PF05206_consen 9 NLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDE--SEPKFERLRIDIKDL 85 (259)
T ss_pred HHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccC--CCCceEEEEEEeecc
Confidence 33333333456789999999999999998876 456899999865333 2333333322 113566677777765
Q ss_pred C
Q 021344 232 P 232 (314)
Q Consensus 232 p 232 (314)
.
T Consensus 86 ~ 86 (259)
T PF05206_consen 86 D 86 (259)
T ss_pred c
Confidence 4
No 412
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=87.35 E-value=6.7 Score=36.96 Aligned_cols=103 Identities=19% Similarity=0.249 Sum_probs=59.3
Q ss_pred ccCCCCeEEEEc-Cc-ccHHHHHHHHhC-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCC---CC----
Q 021344 163 KSAQGGLLVDVS-CG-SGLFSRKFAKSG-T-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC---RL---- 231 (314)
Q Consensus 163 ~~~~~~~iLDiG-cG-~G~~~~~l~~~~-~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~---~l---- 231 (314)
...++.+||-+| +| .|..+..+++.. . ..+++++|.++..++.+++...... ..........|.. ++
T Consensus 172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~--~~~Ga~~~~i~~~~~~~~~~~v 249 (410)
T cd08238 172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEA--ASRGIELLYVNPATIDDLHATL 249 (410)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccc--cccCceEEEECCCccccHHHHH
Confidence 445678899997 45 488888777763 1 2379999999999998887421100 0001111111211 11
Q ss_pred -CC-CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEE
Q 021344 232 -PF-ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGT 273 (314)
Q Consensus 232 -p~-~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~ 273 (314)
.. ....+|+|+... .. ...+....+.++++|.+++.
T Consensus 250 ~~~t~g~g~D~vid~~-----g~-~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 250 MELTGGQGFDDVFVFV-----PV-PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HHHhCCCCCCEEEEcC-----CC-HHHHHHHHHHhccCCeEEEE
Confidence 01 123578776532 12 34678888999988876553
No 413
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=87.32 E-value=0.42 Score=31.12 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=21.3
Q ss_pred eeeccCCCccchhcCCCCccccccccCceecCCCCccccC
Q 021344 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS 99 (314)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~ 99 (314)
+..||.||+.-..... + ..+....+++.|.+||...+.
T Consensus 1 LkPCPfCGg~~~~~~~-~-~~~~~~~~~~~C~~Cga~~~~ 38 (53)
T TIGR03655 1 LKPCPFCGGADVYLRR-G-FDPLDLSHYFECSTCGASGPV 38 (53)
T ss_pred CCCCCCCCCcceeeEe-c-cCCCCCEEEEECCCCCCCccc
Confidence 3579999996542110 0 011122345689999877543
No 414
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=87.05 E-value=1.2 Score=41.27 Aligned_cols=121 Identities=10% Similarity=0.085 Sum_probs=78.4
Q ss_pred HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH-------HHHhcCCCCCCCeEEEEec
Q 021344 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD-------FIKQDNTILTSNLALVRAD 227 (314)
Q Consensus 155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~-------~~~~~~~~~~~~v~~~~~d 227 (314)
...+.+.+...+++...|+|.|.|.....++..+....-+|+++...-.+.+.. ..+..|. ....+..++++
T Consensus 181 l~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk-~~~~~~~i~gs 259 (419)
T KOG3924|consen 181 LRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGK-KPNKIETIHGS 259 (419)
T ss_pred HHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCC-CcCceeecccc
Confidence 344555677788999999999999999998888766677888876544333322 2222331 13567888888
Q ss_pred CCCCCC---CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344 228 VCRLPF---ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 228 ~~~lp~---~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
+..-.+ -....++|+++.+.. -++...-+.++..-+++|-+++-.....
T Consensus 260 f~~~~~v~eI~~eatvi~vNN~~F-dp~L~lr~~eil~~ck~gtrIiS~~~L~ 311 (419)
T KOG3924|consen 260 FLDPKRVTEIQTEATVIFVNNVAF-DPELKLRSKEILQKCKDGTRIISSKPLV 311 (419)
T ss_pred cCCHHHHHHHhhcceEEEEecccC-CHHHHHhhHHHHhhCCCcceEecccccc
Confidence 765221 123467777766532 1223344668888899999998766544
No 415
>PLN02494 adenosylhomocysteinase
Probab=87.01 E-value=3.1 Score=39.88 Aligned_cols=101 Identities=9% Similarity=0.022 Sum_probs=60.0
Q ss_pred HHHHHHHHhcc-CCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344 154 EFKMAQEYFKS-AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (314)
Q Consensus 154 ~~~~l~~~l~~-~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l 231 (314)
.++.+.+.-+. ..+++|+-+|+|. |......++.. +.+|+++|.++.....+.. ...... ++.+.
T Consensus 240 ~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~-Ga~VIV~e~dp~r~~eA~~----------~G~~vv--~leEa 306 (477)
T PLN02494 240 LPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAA-GARVIVTEIDPICALQALM----------EGYQVL--TLEDV 306 (477)
T ss_pred HHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCchhhHHHHh----------cCCeec--cHHHH
Confidence 34444444332 3588999999998 66555555433 4489999999865444433 122222 22111
Q ss_pred CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344 232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
-...|+|+..-. +...+..+....+|+||+++....
T Consensus 307 ---l~~ADVVI~tTG-----t~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 307 ---VSEADIFVTTTG-----NKDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred ---HhhCCEEEECCC-----CccchHHHHHhcCCCCCEEEEcCC
Confidence 124788886322 222234777889999999988774
No 416
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=86.85 E-value=6.1 Score=38.93 Aligned_cols=118 Identities=19% Similarity=0.172 Sum_probs=64.9
Q ss_pred HHhccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC----C--
Q 021344 160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----P-- 232 (314)
Q Consensus 160 ~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l----p-- 232 (314)
++--..++..|||+||..|.|++-..+.- ..+-|+|+|+-+-- ...++.-++.|+... +
T Consensus 38 ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik--------------p~~~c~t~v~dIttd~cr~~l~ 103 (780)
T KOG1098|consen 38 KYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK--------------PIPNCDTLVEDITTDECRSKLR 103 (780)
T ss_pred HhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc--------------cCCccchhhhhhhHHHHHHHHH
Confidence 33334567889999999999998888774 35579999986621 123344444444321 1
Q ss_pred --CCCCchhhheecch----hccCCCH-------HHHHHHHHhhcccCcEEEEEecccCCCCCccchHHHHHHH
Q 021344 233 --FASGFVDAVHAGAA----LHCWPSP-------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLREVM 293 (314)
Q Consensus 233 --~~~~~fD~V~~~~v----l~h~~d~-------~~~l~~i~r~LkpGG~l~i~~~~~~~~~~~~~~~~l~~~~ 293 (314)
...-+.|+|+.... ..++.|. -..|+-....|..||.++.-.+ +. ...+-+.+.+.+++
T Consensus 104 k~l~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvf-rs-~dy~~ll~v~~qLf 175 (780)
T KOG1098|consen 104 KILKTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVF-RS-EDYNGLLRVFGQLF 175 (780)
T ss_pred HHHHhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccc-cC-CcchHHHHHHHHHH
Confidence 01112465554321 1111111 1346666788899999654433 32 23344455555554
No 417
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=86.77 E-value=0.31 Score=35.33 Aligned_cols=30 Identities=23% Similarity=0.712 Sum_probs=21.7
Q ss_pred CeeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (314)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (314)
.-+.||.|+..-..... .+.+.|..|+..|
T Consensus 35 a~y~CpfCgk~~vkR~a---------~GIW~C~~C~~~~ 64 (90)
T PTZ00255 35 AKYFCPFCGKHAVKRQA---------VGIWRCKGCKKTV 64 (90)
T ss_pred CCccCCCCCCCceeeee---------eEEEEcCCCCCEE
Confidence 35779999986433222 2789999998876
No 418
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=86.74 E-value=0.28 Score=40.56 Aligned_cols=38 Identities=13% Similarity=0.309 Sum_probs=22.1
Q ss_pred CeeeccCCCccchhcCCCCccccccccCceecCCCCccccC
Q 021344 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS 99 (314)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~ 99 (314)
-.+.||.|++.-....-- . ....+..++|..||++++.
T Consensus 5 iy~~Cp~Cg~eev~hEVi--k-~~g~~~lvrC~eCG~V~~~ 42 (201)
T COG1326 5 IYIECPSCGSEEVSHEVI--K-ERGREPLVRCEECGTVHPA 42 (201)
T ss_pred EEEECCCCCcchhhHHHH--H-hcCCceEEEccCCCcEeec
Confidence 357899999532210000 0 0112257899999999844
No 419
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=86.48 E-value=0.29 Score=35.48 Aligned_cols=30 Identities=27% Similarity=0.881 Sum_probs=21.7
Q ss_pred CeeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (314)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (314)
.-+.||.|+..-..... .+.+.|..|+..|
T Consensus 34 a~y~CpfCgk~~vkR~a---------~GIW~C~~C~~~~ 63 (91)
T TIGR00280 34 AKYVCPFCGKKTVKRGS---------TGIWTCRKCGAKF 63 (91)
T ss_pred cCccCCCCCCCceEEEe---------eEEEEcCCCCCEE
Confidence 35779999976433222 2789999998876
No 420
>PRK11524 putative methyltransferase; Provisional
Probab=86.41 E-value=0.37 Score=43.21 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=36.1
Q ss_pred CCeEEEEecCCCC--CCCCCchhhheec--chh--c------------cCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 219 SNLALVRADVCRL--PFASGFVDAVHAG--AAL--H------------CWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 219 ~~v~~~~~d~~~l--p~~~~~fD~V~~~--~vl--~------------h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
.+..++++|..+. .+++++||+|++. +.+ . |..-....+.++.++|||||.+++..
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 3446777777553 3456788888873 111 0 00012468899999999999999864
No 421
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=86.35 E-value=1.7 Score=37.15 Aligned_cols=72 Identities=10% Similarity=0.141 Sum_probs=52.9
Q ss_pred HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (314)
Q Consensus 154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~ 230 (314)
..+.+.+..+.-.+..|.+||.|.|..++.+...+. .+...++.+...+.-.+-..+... .++.+..+|+..
T Consensus 38 lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~-~RL~vVE~D~RFip~LQ~L~EAa~----~~~~IHh~D~LR 109 (326)
T KOG0821|consen 38 LTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADV-ARLLVVEKDTRFIPGLQMLSEAAP----GKLRIHHGDVLR 109 (326)
T ss_pred HHHHHHHhccccccceeEEecCCCCchhHHHHhcch-hheeeeeeccccChHHHHHhhcCC----cceEEeccccce
Confidence 344555555555678999999999999999998863 478888888887776665554332 577777788754
No 422
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=86.26 E-value=3.5 Score=38.48 Aligned_cols=99 Identities=18% Similarity=0.229 Sum_probs=58.3
Q ss_pred CeEEEEcCcc-cH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC----------C----
Q 021344 168 GLLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----------L---- 231 (314)
Q Consensus 168 ~~iLDiGcG~-G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~----------l---- 231 (314)
.+|--+|=|. |. ++..+++.|. +|+|+|+++..++...+ .......-+... +
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~--~ViG~DIn~~~Vd~ln~----------G~~~i~e~~~~~~v~~~v~~g~lraTt 77 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGF--KVIGVDINQKKVDKLNR----------GESYIEEPDLDEVVKEAVESGKLRATT 77 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCC--ceEeEeCCHHHHHHHhC----------CcceeecCcHHHHHHHHHhcCCceEec
Confidence 6788888887 54 4566677766 99999999988877654 222222222211 0
Q ss_pred -CCCCCchhhhee-cch-h--ccCCCH---HHHHHHHHhhcccCcEEEEEecccC
Q 021344 232 -PFASGFVDAVHA-GAA-L--HCWPSP---SNAVAEISRILRSGGVFVGTTFLRY 278 (314)
Q Consensus 232 -p~~~~~fD~V~~-~~v-l--~h~~d~---~~~l~~i~r~LkpGG~l~i~~~~~~ 278 (314)
+..-...|+++. .-+ + ++-+|. ....+.+.++||+|-.+++.....+
T Consensus 78 d~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~P 132 (436)
T COG0677 78 DPEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPP 132 (436)
T ss_pred ChhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCC
Confidence 000113444332 111 1 133333 3678889999999998888775443
No 423
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.13 E-value=11 Score=31.94 Aligned_cols=104 Identities=19% Similarity=0.178 Sum_probs=60.2
Q ss_pred CCCeEEEEcCccc--H-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC-----C---
Q 021344 166 QGGLLVDVSCGSG--L-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-----A--- 234 (314)
Q Consensus 166 ~~~~iLDiGcG~G--~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~-----~--- 234 (314)
++++||-.|++.| . +...+++.|. +|++++-++...+...+..... .++.++.+|+.+..- .
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~ 76 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNENKLKRMKKTLSKY-----GNIHYVVGDVSSTESARNVIEKAA 76 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc-----CCeEEEECCCCCHHHHHHHHHHHH
Confidence 3568999998643 2 3444555565 9999999887666554433321 367888999875320 0
Q ss_pred --CCchhhheecchhcc-----------------CCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 235 --SGFVDAVHAGAALHC-----------------WPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 235 --~~~fD~V~~~~vl~h-----------------~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
-+.+|.++....... +.-+..+++.+.+.++++|.+++....
T Consensus 77 ~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~ 137 (238)
T PRK05786 77 KVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSM 137 (238)
T ss_pred HHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecc
Confidence 123566654332110 001123456666677788887776643
No 424
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=86.12 E-value=2.9 Score=38.26 Aligned_cols=106 Identities=18% Similarity=0.114 Sum_probs=66.0
Q ss_pred HHHHhccCCCCeEEEEcCc--ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-C-CC
Q 021344 158 AQEYFKSAQGGLLVDVSCG--SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L-PF 233 (314)
Q Consensus 158 l~~~l~~~~~~~iLDiGcG--~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-l-p~ 233 (314)
+......+++.+||-.|.. .|.++.++++.... .++++--+++..+.+++.-.. .-+.+...|+.+ . .+
T Consensus 134 l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd------~vi~y~~~~~~~~v~~~ 206 (326)
T COG0604 134 LFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGAD------HVINYREEDFVEQVREL 206 (326)
T ss_pred HHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCC------EEEcCCcccHHHHHHHH
Confidence 3344556678999999943 47899999988533 666776677666666552111 122333333221 1 12
Q ss_pred CC-CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344 234 AS-GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (314)
Q Consensus 234 ~~-~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~ 277 (314)
.. ..+|+|+..-. ...+.+..+.|+++|.++......
T Consensus 207 t~g~gvDvv~D~vG-------~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 207 TGGKGVDVVLDTVG-------GDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred cCCCCceEEEECCC-------HHHHHHHHHHhccCCEEEEEecCC
Confidence 22 36899886433 456777889999999999877654
No 425
>PRK13699 putative methylase; Provisional
Probab=86.09 E-value=0.37 Score=41.72 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=17.7
Q ss_pred HHHHHHHHhhcccCcEEEEEe
Q 021344 254 SNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 254 ~~~l~~i~r~LkpGG~l~i~~ 274 (314)
...+.++.|+|||||.+++..
T Consensus 52 ~~~l~E~~RVLKpgg~l~if~ 72 (227)
T PRK13699 52 QPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred HHHHHHHHHHcCCCCEEEEEe
Confidence 467899999999999988643
No 426
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=86.06 E-value=1.3 Score=41.21 Aligned_cols=103 Identities=17% Similarity=0.136 Sum_probs=55.0
Q ss_pred CCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344 166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (314)
Q Consensus 166 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~ 244 (314)
++.+|+-+|+|. |..+...++.. +.+|+++|.++...+.+...+. ..+.....+...+.-.-..+|+|+..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~~~g-------~~v~~~~~~~~~l~~~l~~aDvVI~a 237 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQLDAEFG-------GRIHTRYSNAYEIEDAVKRADLLIGA 237 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcC-------ceeEeccCCHHHHHHHHccCCEEEEc
Confidence 456799999986 66666655543 2389999999877665544221 11111111111111011357888864
Q ss_pred chhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 245 ~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
-.+.--..|.-+-++..+.+|||++++-....
T Consensus 238 ~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d 269 (370)
T TIGR00518 238 VLIPGAKAPKLVSNSLVAQMKPGAVIVDVAID 269 (370)
T ss_pred cccCCCCCCcCcCHHHHhcCCCCCEEEEEecC
Confidence 32111111222235566778999887754433
No 427
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=86.06 E-value=0.35 Score=29.60 Aligned_cols=29 Identities=24% Similarity=0.433 Sum_probs=19.2
Q ss_pred eccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (314)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (314)
.||.|+..+..... .. .....|++|+=.|
T Consensus 1 ~CP~C~~~l~~~~~-----~~--~~id~C~~C~G~W 29 (41)
T PF13453_consen 1 KCPRCGTELEPVRL-----GD--VEIDVCPSCGGIW 29 (41)
T ss_pred CcCCCCcccceEEE-----CC--EEEEECCCCCeEE
Confidence 49999997754332 11 1466899998555
No 428
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=86.06 E-value=0.44 Score=37.30 Aligned_cols=43 Identities=21% Similarity=0.488 Sum_probs=27.6
Q ss_pred CCeeeccCCCccchhcCCCCccccccccCceecCCCCccccCcccee
Q 021344 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYL 104 (314)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~ 104 (314)
.....||.|++.. .........+ .+.++|..|+..|....|..
T Consensus 28 ~~~~~cP~C~s~~-~~k~g~~~~~---~qRyrC~~C~~tf~~~~~~~ 70 (129)
T COG3677 28 ITKVNCPRCKSSN-VVKIGGIRRG---HQRYKCKSCGSTFTVETGSP 70 (129)
T ss_pred cccCcCCCCCccc-eeeECCcccc---ccccccCCcCcceeeeccCc
Confidence 3456799999987 2221111111 46899999999986665543
No 429
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=85.96 E-value=9.9 Score=34.87 Aligned_cols=95 Identities=26% Similarity=0.293 Sum_probs=56.5
Q ss_pred CCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---------CC
Q 021344 165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------FA 234 (314)
Q Consensus 165 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp---------~~ 234 (314)
.++.+||-.|+|. |..+..+++.....++++++.++...+.+++. + . -.++..+-...+ ..
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~----g----~-~~vi~~~~~~~~~~~~~i~~~~~ 246 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREF----G----A-DATIDIDELPDPQRRAIVRDITG 246 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----C----C-CeEEcCcccccHHHHHHHHHHhC
Confidence 3677888888765 66667777765322899999888777666541 1 1 111111100000 01
Q ss_pred CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
...+|+|+-... . ...+.+..+.|+++|+++...
T Consensus 247 ~~~~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 247 GRGADVVIEASG-----H-PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CCCCcEEEECCC-----C-hHHHHHHHHHhccCCEEEEEc
Confidence 235887774321 1 245778889999999998765
No 430
>COG1779 C4-type Zn-finger protein [General function prediction only]
Probab=85.94 E-value=0.31 Score=40.53 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=25.6
Q ss_pred CCCeeeccCCCccchhcCCC--CccccccccCceecCCCCccc
Q 021344 57 EGDLFSCPICYEPLIRKGPT--GLTLGAIYRSGFKCRKCDKTY 97 (314)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~--~~~~~~i~~~~l~C~~C~~~~ 97 (314)
....+.||+||+.+...... .--.+.+......|.+||..+
T Consensus 11 ~~~~~~CPvCg~~l~~~~~~~~IPyFG~V~i~t~~C~~CgYR~ 53 (201)
T COG1779 11 FETRIDCPVCGGTLKAHMYLYDIPYFGEVLISTGVCERCGYRS 53 (201)
T ss_pred eeeeecCCcccceeeEEEeeecCCccceEEEEEEEccccCCcc
Confidence 34567899999976332211 112344555678999998765
No 431
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=85.75 E-value=0.45 Score=38.20 Aligned_cols=38 Identities=26% Similarity=0.599 Sum_probs=23.2
Q ss_pred eeeccCCCccchhcCCCCc------cccccccCceecCCCCccc
Q 021344 60 LFSCPICYEPLIRKGPTGL------TLGAIYRSGFKCRKCDKTY 97 (314)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~------~~~~i~~~~l~C~~C~~~~ 97 (314)
.-.|+.|.+.+........ ..-......++|+.||+.|
T Consensus 91 ~sRC~~CN~~L~~v~~~~v~~~vp~~v~~~~~~f~~C~~C~kiy 134 (147)
T PF01927_consen 91 FSRCPKCNGPLRPVSKEEVKDRVPPYVYETYDEFWRCPGCGKIY 134 (147)
T ss_pred CCccCCCCcEeeechhhccccccCccccccCCeEEECCCCCCEe
Confidence 5679999998754332111 0111122478999999887
No 432
>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent
Probab=85.56 E-value=0.36 Score=30.54 Aligned_cols=39 Identities=15% Similarity=0.285 Sum_probs=23.8
Q ss_pred eccCCCccchhcCCCCccccccccCceecCC--CCccccCcc
Q 021344 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRK--CDKTYSSKD 101 (314)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~--C~~~~~~~~ 101 (314)
.||.||+........ .-.....+-+..|.+ ||+.|....
T Consensus 1 ~CP~Cg~~a~ir~S~-~~s~~~~~~Y~qC~N~~Cg~tfv~~~ 41 (47)
T PF04606_consen 1 RCPHCGSKARIRTSR-QLSPLTRELYCQCTNPECGHTFVANL 41 (47)
T ss_pred CcCCCCCeeEEEEch-hhCcceEEEEEEECCCcCCCEEEEEE
Confidence 499999975332211 112333445788987 999985543
No 433
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=85.55 E-value=5.7 Score=38.78 Aligned_cols=82 Identities=18% Similarity=0.135 Sum_probs=61.2
Q ss_pred CCCeEEEEcCcccHHHHH----HHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-----CCCC
Q 021344 166 QGGLLVDVSCGSGLFSRK----FAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FASG 236 (314)
Q Consensus 166 ~~~~iLDiGcG~G~~~~~----l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-----~~~~ 236 (314)
.+++||--|. +|.++.. +++.++ .+++-+|.++..+...++.+...- ...++.++.+|..+.. +.+-
T Consensus 249 ~gK~vLVTGa-gGSiGsel~~qil~~~p-~~i~l~~~~E~~~~~i~~el~~~~--~~~~~~~~igdVrD~~~~~~~~~~~ 324 (588)
T COG1086 249 TGKTVLVTGG-GGSIGSELCRQILKFNP-KEIILFSRDEYKLYLIDMELREKF--PELKLRFYIGDVRDRDRVERAMEGH 324 (588)
T ss_pred CCCEEEEeCC-CCcHHHHHHHHHHhcCC-CEEEEecCchHHHHHHHHHHHhhC--CCcceEEEecccccHHHHHHHHhcC
Confidence 4678888775 4555444 444454 589999999998888888776643 2478899999998743 4455
Q ss_pred chhhheecchhccCC
Q 021344 237 FVDAVHAGAALHCWP 251 (314)
Q Consensus 237 ~fD~V~~~~vl~h~~ 251 (314)
+.|+|+...++-|+|
T Consensus 325 kvd~VfHAAA~KHVP 339 (588)
T COG1086 325 KVDIVFHAAALKHVP 339 (588)
T ss_pred CCceEEEhhhhccCc
Confidence 799999999999997
No 434
>PRK12939 short chain dehydrogenase; Provisional
Probab=85.46 E-value=5.8 Score=34.02 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=46.1
Q ss_pred CCCeEEEEcCcc--cH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-----CC---
Q 021344 166 QGGLLVDVSCGS--GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--- 234 (314)
Q Consensus 166 ~~~~iLDiGcG~--G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-----~~--- 234 (314)
+++++|=.|++. |. ++..+.+.+. ++++++-++..+....+.++..+ .++.++.+|+.+.. +.
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~ 79 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAAG----GRAHAIAADLADPASVQRFFDAAA 79 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHHHHHHH
Confidence 356788787643 22 3344455565 89999988876666555554332 57889999987632 10
Q ss_pred --CCchhhheecch
Q 021344 235 --SGFVDAVHAGAA 246 (314)
Q Consensus 235 --~~~fD~V~~~~v 246 (314)
-+.+|+|+....
T Consensus 80 ~~~~~id~vi~~ag 93 (250)
T PRK12939 80 AALGGLDGLVNNAG 93 (250)
T ss_pred HHcCCCCEEEECCC
Confidence 135787775443
No 435
>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]
Probab=85.24 E-value=0.44 Score=34.77 Aligned_cols=36 Identities=25% Similarity=0.600 Sum_probs=26.7
Q ss_pred eeeccCCCccchhcCCCCccccccccCceecCCCCccccCccc
Q 021344 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDN 102 (314)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g 102 (314)
++-||.||+-|...... + ...+.|+.|...+++...
T Consensus 1 m~FCP~Cgn~Live~g~------~-~~rf~C~tCpY~~~I~~e 36 (105)
T KOG2906|consen 1 MLFCPTCGNMLIVESGE------S-CNRFSCRTCPYVFPISRE 36 (105)
T ss_pred CcccCCCCCEEEEecCC------e-EeeEEcCCCCceeeEeee
Confidence 35699999988765432 2 467999999988877743
No 436
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.09 E-value=0.49 Score=35.03 Aligned_cols=25 Identities=36% Similarity=0.891 Sum_probs=20.5
Q ss_pred CeeeccCCCccchhcCCCCccccccccCceecCCCCcc
Q 021344 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (314)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~ 96 (314)
-+..||+|+..++. ..++|.+|+..
T Consensus 5 ~~~~cPvcg~~~iV-------------TeL~c~~~etT 29 (122)
T COG3877 5 VINRCPVCGRKLIV-------------TELKCSNCETT 29 (122)
T ss_pred CCCCCCccccccee-------------EEEecCCCCce
Confidence 35679999999877 56999999765
No 437
>PRK07109 short chain dehydrogenase; Provisional
Probab=85.02 E-value=12 Score=34.21 Aligned_cols=75 Identities=25% Similarity=0.245 Sum_probs=49.5
Q ss_pred CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC---------
Q 021344 166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF--------- 233 (314)
Q Consensus 166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~--------- 233 (314)
.+++||-.|++.|- ++..+++.|. +|+.++-++..++...+.++..+ .++.++.+|+.+...
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~g----~~~~~v~~Dv~d~~~v~~~~~~~~ 80 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAAG----GEALAVVADVADAEAVQAAADRAE 80 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC----CcEEEEEecCCCHHHHHHHHHHHH
Confidence 35678888875542 4455666665 89999998887776666655443 578888999876320
Q ss_pred -CCCchhhheecch
Q 021344 234 -ASGFVDAVHAGAA 246 (314)
Q Consensus 234 -~~~~fD~V~~~~v 246 (314)
.-+.+|+++.+..
T Consensus 81 ~~~g~iD~lInnAg 94 (334)
T PRK07109 81 EELGPIDTWVNNAM 94 (334)
T ss_pred HHCCCCCEEEECCC
Confidence 0135787776543
No 438
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=85.01 E-value=0.36 Score=34.98 Aligned_cols=30 Identities=27% Similarity=0.800 Sum_probs=21.5
Q ss_pred CeeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (314)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (314)
.-+.||.|+..-..... .+.+.|..|+..+
T Consensus 35 a~y~CpfCgk~~vkR~a---------~GIW~C~~C~~~~ 64 (90)
T PRK03976 35 AKHVCPVCGRPKVKRVG---------TGIWECRKCGAKF 64 (90)
T ss_pred cCccCCCCCCCceEEEE---------EEEEEcCCCCCEE
Confidence 35779999876443222 2789999998876
No 439
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=84.94 E-value=0.58 Score=30.67 Aligned_cols=31 Identities=19% Similarity=0.415 Sum_probs=24.5
Q ss_pred CCCeeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344 57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (314)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (314)
....+.|--|++++..... ..++|..||+..
T Consensus 17 ~~miYiCgdC~~en~lk~~----------D~irCReCG~RI 47 (62)
T KOG3507|consen 17 ATMIYICGDCGQENTLKRG----------DVIRCRECGYRI 47 (62)
T ss_pred ccEEEEeccccccccccCC----------CcEehhhcchHH
Confidence 4568899999999876543 689999998764
No 440
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=84.90 E-value=0.58 Score=31.24 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=19.4
Q ss_pred CeeeccCCCccchhcCCCCccccccccCceecCCCCc
Q 021344 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK 95 (314)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~ 95 (314)
++..||.||++......... .+....-.+.|..||.
T Consensus 2 ~LkPCPFCG~~~~~~~~~~~-~~~~~~~~V~C~~Cga 37 (61)
T PF14354_consen 2 ELKPCPFCGSADVLIRQDEG-FDYGMYYYVECTDCGA 37 (61)
T ss_pred CCcCCCCCCCcceEeecccC-CCCCCEEEEEcCCCCC
Confidence 46779999876544332100 0000003577999986
No 441
>PRK07806 short chain dehydrogenase; Provisional
Probab=84.76 E-value=12 Score=32.00 Aligned_cols=102 Identities=18% Similarity=0.095 Sum_probs=56.2
Q ss_pred CCeEEEEcCcc--cH-HHHHHHHhCCCCeEEEEeCCH-HHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC-----C---
Q 021344 167 GGLLVDVSCGS--GL-FSRKFAKSGTYSGVVALDFSE-NMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-----A--- 234 (314)
Q Consensus 167 ~~~iLDiGcG~--G~-~~~~l~~~~~~~~v~giD~s~-~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~-----~--- 234 (314)
++++|-.|++. |. +...+++.+. +|++++-+. ...+...+.++..+ .++.++.+|+.+... .
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~~~~~~~~~~~~ 79 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAAG----GRASAVGADLTDEESVAALMDTAR 79 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhcC----CceEEEEcCCCCHHHHHHHHHHHH
Confidence 56899998644 33 3444555565 888877653 23333333333322 467888899876320 0
Q ss_pred --CCchhhheecchhccCC-------------CHHHHHHHHHhhcccCcEEEEEe
Q 021344 235 --SGFVDAVHAGAALHCWP-------------SPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 235 --~~~fD~V~~~~vl~h~~-------------d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
-+..|+|+......... -+..+++.+.+.++.+|.+++..
T Consensus 80 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 80 EEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred HhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 13577766543321100 12356777777776667666544
No 442
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=84.71 E-value=3.2 Score=33.17 Aligned_cols=38 Identities=21% Similarity=0.165 Sum_probs=25.4
Q ss_pred EEcCccc--HHHHHHH--HhCCCCeEEEEeCCHHHHHHHHHH
Q 021344 172 DVSCGSG--LFSRKFA--KSGTYSGVVALDFSENMLRQCYDF 209 (314)
Q Consensus 172 DiGcG~G--~~~~~l~--~~~~~~~v~giD~s~~~~~~a~~~ 209 (314)
|||++.| .....+. ..++..+++++|+++...+..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5555443 456677999999999999988888
No 443
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=84.61 E-value=0.46 Score=38.13 Aligned_cols=40 Identities=20% Similarity=0.517 Sum_probs=25.4
Q ss_pred cCCCCeeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344 55 ELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (314)
Q Consensus 55 ~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (314)
......+.||.|+......+..... + ..+.+.|+.||...
T Consensus 94 e~~~~~Y~Cp~C~~~y~~~ea~~~~-d--~~~~f~Cp~Cg~~l 133 (147)
T smart00531 94 ETNNAYYKCPNCQSKYTFLEANQLL-D--MDGTFTCPRCGEEL 133 (147)
T ss_pred ccCCcEEECcCCCCEeeHHHHHHhc-C--CCCcEECCCCCCEE
Confidence 3345689999999876543321111 1 24569999998653
No 444
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=84.60 E-value=0.54 Score=43.94 Aligned_cols=32 Identities=28% Similarity=0.631 Sum_probs=24.2
Q ss_pred eeeccCCCccchhcCCCCccccccccCceecCCCCccccCcc
Q 021344 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD 101 (314)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~ 101 (314)
.=.||.||......+. +.++|++||..++...
T Consensus 350 ~p~Cp~Cg~~m~S~G~----------~g~rC~kCg~~~~~~~ 381 (421)
T COG1571 350 NPVCPRCGGRMKSAGR----------NGFRCKKCGTRARETL 381 (421)
T ss_pred CCCCCccCCchhhcCC----------CCcccccccccCCccc
Confidence 4479999998765442 4899999998885543
No 445
>PHA02998 RNA polymerase subunit; Provisional
Probab=84.17 E-value=0.51 Score=38.44 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=27.3
Q ss_pred CeeeccCCCccchh-cCCCCccccccccCceecCCCCccccCc
Q 021344 59 DLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (314)
Q Consensus 59 ~~l~CP~C~~~l~~-~~~~~~~~~~i~~~~l~C~~C~~~~~~~ 100 (314)
....||.|++.... ...+....++.+...+.|..||+.|..+
T Consensus 142 t~v~CPkCg~~~A~f~qlQTRSADEPmT~FYkC~~CG~~wkpp 184 (195)
T PHA02998 142 YNTPCPNCKSKNTTPMMIQTRAADEPPLVRHACRDCKKHFKPP 184 (195)
T ss_pred cCCCCCCCCCCceEEEEEeeccCCCCceEEEEcCCCCCccCCc
Confidence 45789999985311 1111223456667789999999998443
No 446
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=84.16 E-value=4 Score=38.03 Aligned_cols=93 Identities=16% Similarity=0.080 Sum_probs=54.3
Q ss_pred CCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHH-HHHHHHHHHhcCCCCCCCeEEEEecCCC---CCCCCCchh
Q 021344 165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENM-LRQCYDFIKQDNTILTSNLALVRADVCR---LPFASGFVD 239 (314)
Q Consensus 165 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~-~~~a~~~~~~~~~~~~~~v~~~~~d~~~---lp~~~~~fD 239 (314)
.++.+||-.|+|. |..+..+++.. +.++++++.+++. .+.+++ .+ ++.+. +..+ +.-..+.+|
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~Vi~~~~~~~~~~~~a~~----lG------a~~~i-~~~~~~~v~~~~~~~D 244 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAF-GLRVTVISRSSEKEREAIDR----LG------ADSFL-VTTDSQKMKEAVGTMD 244 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHc-CCeEEEEeCChHHhHHHHHh----CC------CcEEE-cCcCHHHHHHhhCCCc
Confidence 4678899999876 77777777764 3479999887543 444433 11 11111 1110 000012367
Q ss_pred hheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344 240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 240 ~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
+|+-. ...+ ..+.+..+.|++||.++....
T Consensus 245 ~vid~-----~G~~-~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 245 FIIDT-----VSAE-HALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred EEEEC-----CCcH-HHHHHHHHhhcCCCEEEEEcc
Confidence 66642 2222 357788899999999987664
No 447
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=84.15 E-value=13 Score=33.79 Aligned_cols=101 Identities=17% Similarity=0.173 Sum_probs=61.0
Q ss_pred HHhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-------C
Q 021344 160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-------L 231 (314)
Q Consensus 160 ~~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-------l 231 (314)
......++.+||-.|+|. |..+..+++......+++++-++...+.+++. + .. .++..+-.. +
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g---~~--~vi~~~~~~~~~~~~~~ 226 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----G---AT--HTVNVRTEDTPESAEKI 226 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----C---Cc--EEeccccccchhHHHHH
Confidence 344556788888888766 77777777764222389998888777766542 1 01 111111111 0
Q ss_pred --CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344 232 --PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 232 --p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
......+|+|+-... ....+.+..+.|+++|+++....
T Consensus 227 ~~~~~~~~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T cd05285 227 AELLGGKGPDVVIECTG------AESCIQTAIYATRPGGTVVLVGM 266 (343)
T ss_pred HHHhCCCCCCEEEECCC------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 122345888885422 12367888999999999987653
No 448
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=83.95 E-value=0.73 Score=27.89 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=21.8
Q ss_pred CCCeeeccCCCccchhcCCCCccccccccCceecCCCCc
Q 021344 57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK 95 (314)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~ 95 (314)
.+-.+.|+.||..+...... .......|+.||.
T Consensus 2 p~Y~y~C~~Cg~~fe~~~~~------~~~~~~~CP~Cg~ 34 (41)
T smart00834 2 PIYEYRCEDCGHTFEVLQKI------SDDPLATCPECGG 34 (41)
T ss_pred CCEEEEcCCCCCEEEEEEec------CCCCCCCCCCCCC
Confidence 34568999999976443211 0135788999986
No 449
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=83.74 E-value=8.8 Score=35.35 Aligned_cols=97 Identities=14% Similarity=0.158 Sum_probs=55.0
Q ss_pred CCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEE-ecCCCCCCCCCchhhhe
Q 021344 165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-ADVCRLPFASGFVDAVH 242 (314)
Q Consensus 165 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~-~d~~~lp~~~~~fD~V~ 242 (314)
.++.++|-+|+|. |..+..+++.. ..++++++.+++....+.+.+ + .. ..+. .+...+.-....+|+|+
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~-G~~vi~~~~~~~~~~~~~~~~---G----a~-~~i~~~~~~~~~~~~~~~D~vi 249 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSDKKREEALEHL---G----AD-DYLVSSDAAEMQEAADSLDYII 249 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHhc---C----Cc-EEecCCChHHHHHhcCCCcEEE
Confidence 4678888888765 77777777764 347888888776554443322 1 11 1111 11000000012366665
Q ss_pred ecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 243 ~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
-. +.. ...+....+.|++||+++.....
T Consensus 250 d~-----~g~-~~~~~~~~~~l~~~G~iv~~G~~ 277 (357)
T PLN02514 250 DT-----VPV-FHPLEPYLSLLKLDGKLILMGVI 277 (357)
T ss_pred EC-----CCc-hHHHHHHHHHhccCCEEEEECCC
Confidence 32 222 24577788999999999886643
No 450
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=83.68 E-value=12 Score=34.06 Aligned_cols=99 Identities=13% Similarity=0.059 Sum_probs=61.3
Q ss_pred HHhccCCCCeEEEEcC--cccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEe----cCCC-C-
Q 021344 160 EYFKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA----DVCR-L- 231 (314)
Q Consensus 160 ~~l~~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~----d~~~-l- 231 (314)
......++.+||-.|+ |.|.++..+++.. +.++++++-++...+.+++.+.. . .++.. +..+ +
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~lGa------~--~vi~~~~~~~~~~~i~ 215 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNKLGF------D--DAFNYKEEPDLDAALK 215 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCC------c--eeEEcCCcccHHHHHH
Confidence 3345667889999996 4477877777764 34899999888877777653211 1 11211 1100 0
Q ss_pred CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
....+.+|+|+-. +. ...+.+..+.|+++|.++...
T Consensus 216 ~~~~~gvd~v~d~-----~g--~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 216 RYFPNGIDIYFDN-----VG--GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred HhCCCCcEEEEEC-----CC--HHHHHHHHHHhccCcEEEEec
Confidence 0112457777643 22 245788899999999998754
No 451
>PRK06701 short chain dehydrogenase; Provisional
Probab=83.61 E-value=9.8 Score=33.91 Aligned_cols=104 Identities=17% Similarity=0.231 Sum_probs=59.2
Q ss_pred CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCCH-HHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-----CC--
Q 021344 166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSE-NMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA-- 234 (314)
Q Consensus 166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~-~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-----~~-- 234 (314)
+++++|-.|++.|. ++..+++.+. +|+.++.+. ...+...+.++..+ .++.++.+|+.+.. +.
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~i 118 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKEG----VKCLLIPGDVSDEAFCKDAVEET 118 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcC----CeEEEEEccCCCHHHHHHHHHHH
Confidence 36789999976542 4555666665 888887764 23333333333322 56888899986532 10
Q ss_pred ---CCchhhheecchhcc----CCC----------------HHHHHHHHHhhcccCcEEEEEec
Q 021344 235 ---SGFVDAVHAGAALHC----WPS----------------PSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 235 ---~~~fD~V~~~~vl~h----~~d----------------~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
-+.+|+|+......+ +.+ +..+++.+.+.++++|.++....
T Consensus 119 ~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS 182 (290)
T PRK06701 119 VRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS 182 (290)
T ss_pred HHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 135787775443321 111 12345566666777777776553
No 452
>PRK05854 short chain dehydrogenase; Provisional
Probab=83.57 E-value=16 Score=32.91 Aligned_cols=78 Identities=18% Similarity=0.199 Sum_probs=50.3
Q ss_pred CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----------
Q 021344 166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------- 232 (314)
Q Consensus 166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp---------- 232 (314)
.++++|-.|++.|- .+..|++.|. +|+.++-+....+.+.+.+.... ...++.++.+|+.+..
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~--~~~~v~~~~~Dl~d~~sv~~~~~~~~ 88 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNRAKGEAAVAAIRTAV--PDAKLSLRALDLSSLASVAALGEQLR 88 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhC--CCCceEEEEecCCCHHHHHHHHHHHH
Confidence 46788888877653 4556666665 89999888776666655554322 1246888999987632
Q ss_pred CCCCchhhheecchh
Q 021344 233 FASGFVDAVHAGAAL 247 (314)
Q Consensus 233 ~~~~~fD~V~~~~vl 247 (314)
-..+..|+++.+..+
T Consensus 89 ~~~~~iD~li~nAG~ 103 (313)
T PRK05854 89 AEGRPIHLLINNAGV 103 (313)
T ss_pred HhCCCccEEEECCcc
Confidence 012457887765443
No 453
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=83.57 E-value=15 Score=33.40 Aligned_cols=92 Identities=10% Similarity=0.010 Sum_probs=56.1
Q ss_pred CeEEEEcC--cccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-----CCCCCchhh
Q 021344 168 GLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PFASGFVDA 240 (314)
Q Consensus 168 ~~iLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-----p~~~~~fD~ 240 (314)
.+||-.|+ |.|..+..+++.....+|++++-+++..+.+++.+.. + .++..+-..+ ....+.+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa------~--~vi~~~~~~~~~~i~~~~~~gvd~ 227 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGF------D--AAINYKTDNVAERLRELCPEGVDV 227 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCC------c--EEEECCCCCHHHHHHHHCCCCceE
Confidence 78999986 4588888888775222799999998877776653211 1 1221111111 011245787
Q ss_pred heecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 241 V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
|+.. +... .+.+..+.|+++|+++...
T Consensus 228 vid~-----~g~~--~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 228 YFDN-----VGGE--ISDTVISQMNENSHIILCG 254 (345)
T ss_pred EEEC-----CCcH--HHHHHHHHhccCCEEEEEe
Confidence 7642 2222 3578889999999998754
No 454
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=83.43 E-value=0.63 Score=36.97 Aligned_cols=43 Identities=21% Similarity=0.464 Sum_probs=27.0
Q ss_pred eeccCCCccchhcCCCCc-cccccccCceecCCCCccccCccce
Q 021344 61 FSCPICYEPLIRKGPTGL-TLGAIYRSGFKCRKCDKTYSSKDNY 103 (314)
Q Consensus 61 l~CP~C~~~l~~~~~~~~-~~~~i~~~~l~C~~C~~~~~~~~g~ 103 (314)
+.||.|+.+....-.+.. .++...+.--.|..||..|...+-+
T Consensus 1 M~CP~C~~~dtkViDSR~~~dg~~IRRRReC~~C~~RFTTyErv 44 (147)
T TIGR00244 1 MHCPFCQHHNTRVLDSRLVEDGQSIRRRRECLECHERFTTFERA 44 (147)
T ss_pred CCCCCCCCCCCEeeeccccCCCCeeeecccCCccCCccceeeec
Confidence 469999997655443322 2233333456799999999665443
No 455
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=83.33 E-value=9.9 Score=34.46 Aligned_cols=97 Identities=14% Similarity=0.183 Sum_probs=57.8
Q ss_pred ccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC------CCCC
Q 021344 163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL------PFAS 235 (314)
Q Consensus 163 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l------p~~~ 235 (314)
...++.+||..|+|. |..+..+++......+++++.++...+.+++. + ...++...-... -...
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g-----~~~vi~~~~~~~~~~i~~~~~~ 234 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----G-----ATDIINPKNGDIVEQILELTGG 234 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----C-----CcEEEcCCcchHHHHHHHHcCC
Confidence 345678888888763 76777777764223788888888777666542 1 111221111110 0122
Q ss_pred CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
+.+|+|+.... ....+.+..+.|+++|+++...
T Consensus 235 ~~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 235 RGVDCVIEAVG------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred CCCcEEEEccC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 46888775321 1246888889999999988654
No 456
>PRK08265 short chain dehydrogenase; Provisional
Probab=83.32 E-value=9 Score=33.37 Aligned_cols=72 Identities=15% Similarity=0.154 Sum_probs=44.9
Q ss_pred CCCeEEEEcCccc--H-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-----CC---
Q 021344 166 QGGLLVDVSCGSG--L-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--- 234 (314)
Q Consensus 166 ~~~~iLDiGcG~G--~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-----~~--- 234 (314)
.++++|-.|++.| . .+..+++.|. +|+.+|.++...+...+.. ..++.++.+|+.+.. +.
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~~~ 75 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDADNGAAVAASL-------GERARFIATDITDDAAIERAVATVV 75 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh-------CCeeEEEEecCCCHHHHHHHHHHHH
Confidence 3568898886554 2 4555666666 8999998876554443322 146788899987632 00
Q ss_pred --CCchhhheecch
Q 021344 235 --SGFVDAVHAGAA 246 (314)
Q Consensus 235 --~~~fD~V~~~~v 246 (314)
-+..|+++.+..
T Consensus 76 ~~~g~id~lv~~ag 89 (261)
T PRK08265 76 ARFGRVDILVNLAC 89 (261)
T ss_pred HHhCCCCEEEECCC
Confidence 135687776543
No 457
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=83.30 E-value=6.5 Score=32.18 Aligned_cols=109 Identities=16% Similarity=0.102 Sum_probs=63.2
Q ss_pred EcCcccHHHHHHHHhCC-CCeEEEEeCCH--HHHHHHH---HHHHhcCCCCCCCe-EEEEecCCCCC----CCCCchhhh
Q 021344 173 VSCGSGLFSRKFAKSGT-YSGVVALDFSE--NMLRQCY---DFIKQDNTILTSNL-ALVRADVCRLP----FASGFVDAV 241 (314)
Q Consensus 173 iGcG~G~~~~~l~~~~~-~~~v~giD~s~--~~~~~a~---~~~~~~~~~~~~~v-~~~~~d~~~lp----~~~~~fD~V 241 (314)
||=|.=.|+..|++... ..++++.-++. ...+... ++++.-. ..++ -....|+.++. ...+.||.|
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~---~~g~~V~~~VDat~l~~~~~~~~~~FDrI 79 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELR---ELGVTVLHGVDATKLHKHFRLKNQRFDRI 79 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHh---hcCCccccCCCCCcccccccccCCcCCEE
Confidence 56666678888888744 55666665443 2222221 2222211 1222 23445666553 356789999
Q ss_pred eecchhccCC--------C-------HHHHHHHHHhhcccCcEEEEEecccCCCCCccchH
Q 021344 242 HAGAALHCWP--------S-------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGR 287 (314)
Q Consensus 242 ~~~~vl~h~~--------d-------~~~~l~~i~r~LkpGG~l~i~~~~~~~~~~~~~~~ 287 (314)
+.++- |+. + ...+++.+.++|+++|.+.|+.....+ ...|...
T Consensus 80 iFNFP--H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p-y~~W~i~ 137 (166)
T PF10354_consen 80 IFNFP--HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP-YDSWNIE 137 (166)
T ss_pred EEeCC--CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC-CccccHH
Confidence 97643 333 0 136899999999999999998855443 2344433
No 458
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=83.17 E-value=25 Score=32.04 Aligned_cols=99 Identities=18% Similarity=0.178 Sum_probs=60.3
Q ss_pred HhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-------
Q 021344 161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------- 232 (314)
Q Consensus 161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp------- 232 (314)
.....++.+||-.|+|. |..+..+++......+++++.++...+.+++. + .+.+. |..+..
T Consensus 167 ~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~----g------a~~~i-~~~~~~~~~~l~~ 235 (351)
T cd08233 167 RSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL----G------ATIVL-DPTEVDVVAEVRK 235 (351)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----C------CCEEE-CCCccCHHHHHHH
Confidence 34456688888888754 66666677664223789999988888777552 1 11111 111111
Q ss_pred C-CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 233 F-ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 233 ~-~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
. ..+.+|+|+-... . ...+..+.+.|++||.++.....
T Consensus 236 ~~~~~~~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g~~ 274 (351)
T cd08233 236 LTGGGGVDVSFDCAG-----V-QATLDTAIDALRPRGTAVNVAIW 274 (351)
T ss_pred HhCCCCCCEEEECCC-----C-HHHHHHHHHhccCCCEEEEEccC
Confidence 1 1234777774321 1 23578888999999999876643
No 459
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=83.17 E-value=0.58 Score=37.16 Aligned_cols=43 Identities=16% Similarity=0.394 Sum_probs=27.1
Q ss_pred eeccCCCccchhcCCCCc-cccccccCceecCCCCccccCccce
Q 021344 61 FSCPICYEPLIRKGPTGL-TLGAIYRSGFKCRKCDKTYSSKDNY 103 (314)
Q Consensus 61 l~CP~C~~~l~~~~~~~~-~~~~i~~~~l~C~~C~~~~~~~~g~ 103 (314)
+.||.|+..-.....+.. .+++..+.--.|.+||+.|..-+-.
T Consensus 1 M~CPfC~~~~tkViDSR~~edg~aIRRRReC~~C~~RFTTfE~~ 44 (156)
T COG1327 1 MKCPFCGHEDTKVIDSRPAEEGNAIRRRRECLECGERFTTFERA 44 (156)
T ss_pred CCCCCCCCCCCeeeecccccccchhhhhhcccccccccchhhee
Confidence 469999997655443322 2233334456799999999655433
No 460
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=83.10 E-value=9.6 Score=31.09 Aligned_cols=105 Identities=17% Similarity=0.162 Sum_probs=61.6
Q ss_pred HHHHHHHHHhcc--CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344 153 EEFKMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (314)
Q Consensus 153 ~~~~~l~~~l~~--~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~ 230 (314)
+..+.+.+.+.. .+..+|+=|||=+-.....- ...+..+++..|++....... .+ .|+.-|...
T Consensus 10 ~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF~~~~------------~~-~F~fyD~~~ 75 (162)
T PF10237_consen 10 ETAEFLARELLDGALDDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRFEQFG------------GD-EFVFYDYNE 75 (162)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchHHhcC------------Cc-ceEECCCCC
Confidence 334444444433 34678999998775544333 133455899999987543211 23 455666543
Q ss_pred ---CC--CCCCchhhheecchhccCCC-H-HHHHHHHHhhcccCcEEEEEe
Q 021344 231 ---LP--FASGFVDAVHAGAALHCWPS-P-SNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 231 ---lp--~~~~~fD~V~~~~vl~h~~d-~-~~~l~~i~r~LkpGG~l~i~~ 274 (314)
+| + .++||+|++.=-+ +.. - .+....+..++|+++.+++.+
T Consensus 76 p~~~~~~l-~~~~d~vv~DPPF--l~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 76 PEELPEEL-KGKFDVVVIDPPF--LSEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred hhhhhhhc-CCCceEEEECCCC--CCHHHHHHHHHHHHHHhCccceEEEec
Confidence 22 2 4689999984332 111 1 244455556668889999888
No 461
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.08 E-value=2.4 Score=38.06 Aligned_cols=99 Identities=14% Similarity=0.185 Sum_probs=57.8
Q ss_pred CeEEEEcCcc--cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc-------CCCC-------CCCeEEEEecCCCC
Q 021344 168 GLLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-------NTIL-------TSNLALVRADVCRL 231 (314)
Q Consensus 168 ~~iLDiGcG~--G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-------~~~~-------~~~v~~~~~d~~~l 231 (314)
.+|--||+|+ +.++..++..|. +|+.+|.+++.++.+++++... +... ..+++ ...|...
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~- 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGD- 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHH-
Confidence 4788999996 446666777776 9999999999998877664431 1000 00111 1122211
Q ss_pred CCCCCchhhheecchhccCCCHHHHHHHHHhhc-ccCcEEEEEe
Q 021344 232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRIL-RSGGVFVGTT 274 (314)
Q Consensus 232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~L-kpGG~l~i~~ 274 (314)
-...|+|+.. +.|...-...++.++.+.+ +|+.++...+
T Consensus 82 ---~~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il~snT 121 (286)
T PRK07819 82 ---FADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVLASNT 121 (286)
T ss_pred ---hCCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 1235655543 2232222346788888888 7777775555
No 462
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=82.96 E-value=4.9 Score=37.62 Aligned_cols=53 Identities=8% Similarity=0.011 Sum_probs=39.4
Q ss_pred HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHH
Q 021344 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK 211 (314)
Q Consensus 157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~ 211 (314)
.-.+.+...++++||-|.+|....+..+.. +| .+|++||+++......+=++.
T Consensus 26 vD~~aL~i~~~d~vl~ItSaG~N~L~yL~~-~P-~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 26 VDMEALNIGPDDRVLTITSAGCNALDYLLA-GP-KRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred HHHHHhCCCCCCeEEEEccCCchHHHHHhc-CC-ceEEEEeCCHHHHHHHHHHHH
Confidence 445677888899999998776666666554 43 399999999988777665443
No 463
>PRK07576 short chain dehydrogenase; Provisional
Probab=82.88 E-value=11 Score=32.92 Aligned_cols=59 Identities=25% Similarity=0.264 Sum_probs=38.8
Q ss_pred CCCeEEEEcCcc--cH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344 166 QGGLLVDVSCGS--GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (314)
Q Consensus 166 ~~~~iLDiGcG~--G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~ 230 (314)
+++++|-.|.+. |. ++..++..+. +|++++.+++.++...+.+...+ .++.++..|+.+
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~ 69 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQQAG----PEGLGVSADVRD 69 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhC----CceEEEECCCCC
Confidence 467889888644 22 4455565565 89999998876665554444332 456788888865
No 464
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=82.85 E-value=13 Score=33.60 Aligned_cols=98 Identities=17% Similarity=0.151 Sum_probs=60.3
Q ss_pred HhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC----C--CC
Q 021344 161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----L--PF 233 (314)
Q Consensus 161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~----l--p~ 233 (314)
.....++.+||..|+|. |..+..+++.. +.+++++.-++...+.+++.- .-+++...-.. + ..
T Consensus 154 ~~~l~~g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~~g---------~~~v~~~~~~~~~~~l~~~~ 223 (337)
T cd08261 154 RAGVTAGDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFARELG---------ADDTINVGDEDVAARLRELT 223 (337)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHHhC---------CCEEecCcccCHHHHHHHHh
Confidence 34456688999998775 77777777763 358999988888777775421 11111111111 0 01
Q ss_pred CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
....+|+++.... ....+.++.+.|+++|.++...
T Consensus 224 ~~~~vd~vld~~g------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 224 DGEGADVVIDATG------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CCCCCCEEEECCC------CHHHHHHHHHHHhcCCEEEEEc
Confidence 2345888875421 1345788899999999988654
No 465
>COG1594 RPB9 DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]
Probab=82.83 E-value=0.81 Score=34.95 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=28.1
Q ss_pred ccccCCCCeeeccCCCccchh-cCCCCccccccccCceecCCCCccc
Q 021344 52 QTLELEGDLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTY 97 (314)
Q Consensus 52 ~~~~~~~~~l~CP~C~~~l~~-~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (314)
+..........||.||..-.. ...+.-..++.+...++|..||+.|
T Consensus 64 ~~~~~~~~~~~CpkCg~~ea~y~~~QtRsaDEp~T~Fy~C~~Cg~~w 110 (113)
T COG1594 64 GAKTLPTAKEKCPKCGNKEAYYWQLQTRSADEPETRFYKCTRCGYRW 110 (113)
T ss_pred CccccccccccCCCCCCceeEEEeeehhccCCCceEEEEecccCCEe
Confidence 333333446789999995211 1111223456666789999999887
No 466
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=82.78 E-value=0.69 Score=30.58 Aligned_cols=35 Identities=26% Similarity=0.488 Sum_probs=19.0
Q ss_pred CCeeeccCCCccchhcCCCCccccccccCceecCCCCcc
Q 021344 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (314)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~ 96 (314)
...|.||.||..++..-.. =-.....++|++||..
T Consensus 23 ~~~F~CPnCG~~~I~RC~~----CRk~~~~Y~CP~CGF~ 57 (59)
T PRK14890 23 AVKFLCPNCGEVIIYRCEK----CRKQSNPYTCPKCGFE 57 (59)
T ss_pred cCEeeCCCCCCeeEeechh----HHhcCCceECCCCCCc
Confidence 4578899998873221100 0011246788888753
No 467
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=82.74 E-value=12 Score=34.63 Aligned_cols=99 Identities=16% Similarity=0.210 Sum_probs=59.8
Q ss_pred hccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-----CCCC
Q 021344 162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PFAS 235 (314)
Q Consensus 162 l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-----p~~~ 235 (314)
....++.+||-.|+|. |..+..+++......++++|.++...+.+++. + . -.++..+-... ....
T Consensus 182 ~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~----g----~-~~~i~~~~~~~~~~v~~~~~ 252 (365)
T cd08278 182 LKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL----G----A-THVINPKEEDLVAAIREITG 252 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----C----C-cEEecCCCcCHHHHHHHHhC
Confidence 3445678898888765 67777777764333699999998887776651 1 1 11121111110 0112
Q ss_pred CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344 236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
..+|+|+-.- .. ...+..+.+.|+++|.++....
T Consensus 253 ~~~d~vld~~-----g~-~~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 253 GGVDYALDTT-----GV-PAVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred CCCcEEEECC-----CC-cHHHHHHHHHhccCCEEEEeCc
Confidence 3577776432 11 2357888999999999887653
No 468
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=82.69 E-value=0.67 Score=39.71 Aligned_cols=29 Identities=17% Similarity=0.022 Sum_probs=16.1
Q ss_pred hheecchhc-cCCCHHHHHHHHHhhcccCc
Q 021344 240 AVHAGAALH-CWPSPSNAVAEISRILRSGG 268 (314)
Q Consensus 240 ~V~~~~vl~-h~~d~~~~l~~i~r~LkpGG 268 (314)
+....+-|+ .+.+...+++-+.+++..++
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 344444443 35566677777777665443
No 469
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=82.64 E-value=1.6 Score=38.53 Aligned_cols=79 Identities=15% Similarity=0.213 Sum_probs=46.6
Q ss_pred HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecchhccCCCHHHHHHH
Q 021344 180 FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAE 259 (314)
Q Consensus 180 ~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~ 259 (314)
+++.|.+.++..+|+|+|.++..++.|++. .-+.-...+.+. + ..+|+|+..--+.. ...++++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~---------g~~~~~~~~~~~--~--~~~DlvvlavP~~~---~~~~l~~ 64 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALEL---------GIIDEASTDIEA--V--EDADLVVLAVPVSA---IEDVLEE 64 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHT---------TSSSEEESHHHH--G--GCCSEEEE-S-HHH---HHHHHHH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHC---------CCeeeccCCHhH--h--cCCCEEEEcCCHHH---HHHHHHH
Confidence 467788888778999999999998888762 111222222111 1 24688887543332 2466778
Q ss_pred HHhhcccCcEEEEEe
Q 021344 260 ISRILRSGGVFVGTT 274 (314)
Q Consensus 260 i~r~LkpGG~l~i~~ 274 (314)
+...+++|+++.=..
T Consensus 65 ~~~~~~~~~iv~Dv~ 79 (258)
T PF02153_consen 65 IAPYLKPGAIVTDVG 79 (258)
T ss_dssp HHCGS-TTSEEEE--
T ss_pred hhhhcCCCcEEEEeC
Confidence 888788877665444
No 470
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=82.48 E-value=2 Score=38.83 Aligned_cols=65 Identities=18% Similarity=0.282 Sum_probs=50.1
Q ss_pred eEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---CCCCchhhheecc
Q 021344 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVDAVHAGA 245 (314)
Q Consensus 169 ~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp---~~~~~fD~V~~~~ 245 (314)
+++|+=||.|.+..-+...|. .-+.++|+++.+.+..+.+. . ....+|+.++. ++. .+|+++...
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~-~~~~a~e~~~~a~~~y~~N~--------~--~~~~~Di~~~~~~~l~~-~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGF-EVVWAVEIDPDACETYKANF--------P--EVICGDITEIDPSDLPK-DVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTE-EEEEEEESSHHHHHHHHHHH--------T--EEEESHGGGCHHHHHHH-T-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcCc-EEEEEeecCHHHHHhhhhcc--------c--ccccccccccccccccc-cceEEEecc
Confidence 689999999999999999983 46889999999988888764 2 77888987764 333 489888753
No 471
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=82.17 E-value=13 Score=33.79 Aligned_cols=95 Identities=20% Similarity=0.179 Sum_probs=55.4
Q ss_pred CCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-----CCCCch
Q 021344 165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FASGFV 238 (314)
Q Consensus 165 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-----~~~~~f 238 (314)
.++.+||-.|+|. |..+..+++.....++++++-++.....+++. + . -.++...-.... ...+.+
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g----~-~~~~~~~~~~~~~~~~~~~~~~v 232 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKM----G----A-DVVINPREEDVVEVKSVTDGTGV 232 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----C----c-ceeeCcccccHHHHHHHcCCCCC
Confidence 4577888888765 66777777765322688888777766666541 1 1 011111111110 122457
Q ss_pred hhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 239 D~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
|+|+..-. ....+.++.+.|+++|.++...
T Consensus 233 d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 233 DVVLEMSG------NPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred CEEEECCC------CHHHHHHHHHHhccCCEEEEEc
Confidence 88775321 1345778889999999998764
No 472
>PRK06181 short chain dehydrogenase; Provisional
Probab=82.01 E-value=11 Score=32.69 Aligned_cols=73 Identities=16% Similarity=0.210 Sum_probs=44.5
Q ss_pred CeEEEEcCccc--H-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC-----C-----
Q 021344 168 GLLVDVSCGSG--L-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-----A----- 234 (314)
Q Consensus 168 ~~iLDiGcG~G--~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~-----~----- 234 (314)
.++|-.|+..| . ++..+++.+. +|++++.++...+...+.+...+ .++.++.+|+.+..- .
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~~ 75 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA--QLVLAARNETRLASLAQELADHG----GEALVVPTDVSDAEACERLIEAAVAR 75 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 46787775442 2 3334455554 89999998876665555554433 578888899866320 0
Q ss_pred CCchhhheecch
Q 021344 235 SGFVDAVHAGAA 246 (314)
Q Consensus 235 ~~~fD~V~~~~v 246 (314)
-+..|+|+....
T Consensus 76 ~~~id~vi~~ag 87 (263)
T PRK06181 76 FGGIDILVNNAG 87 (263)
T ss_pred cCCCCEEEECCC
Confidence 124787776543
No 473
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=81.98 E-value=0.61 Score=38.71 Aligned_cols=34 Identities=26% Similarity=0.621 Sum_probs=24.9
Q ss_pred cCCCCeeeccCCCccchhcCCCCccccccccCceecCCCCcc
Q 021344 55 ELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (314)
Q Consensus 55 ~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~ 96 (314)
......+.||.|+......+ .....+.|+.||..
T Consensus 112 e~~~~~Y~Cp~C~~rytf~e--------A~~~~F~Cp~Cg~~ 145 (178)
T PRK06266 112 EENNMFFFCPNCHIRFTFDE--------AMEYGFRCPQCGEM 145 (178)
T ss_pred ccCCCEEECCCCCcEEeHHH--------HhhcCCcCCCCCCC
Confidence 33456899999998776543 23468999999855
No 474
>PRK08324 short chain dehydrogenase; Validated
Probab=81.96 E-value=13 Score=37.81 Aligned_cols=103 Identities=22% Similarity=0.225 Sum_probs=62.9
Q ss_pred CCCeEEEEcCcc--cH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-----CC---
Q 021344 166 QGGLLVDVSCGS--GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--- 234 (314)
Q Consensus 166 ~~~~iLDiGcG~--G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-----~~--- 234 (314)
.++++|-.|++. |. ++..+++.|. +|+.+|.++..++.+.+.+... .++.++.+|+.+.. +.
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~~~~~~~~~~l~~~-----~~v~~v~~Dvtd~~~v~~~~~~~~ 493 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDEEAAEAAAAELGGP-----DRALGVACDVTDEAAVQAAFEEAA 493 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHhcc-----CcEEEEEecCCCHHHHHHHHHHHH
Confidence 457899998644 33 4455555665 8999999987766655543321 36888889986532 10
Q ss_pred --CCchhhheecchhccCCC-------------------HHHHHHHHHhhccc---CcEEEEEec
Q 021344 235 --SGFVDAVHAGAALHCWPS-------------------PSNAVAEISRILRS---GGVFVGTTF 275 (314)
Q Consensus 235 --~~~fD~V~~~~vl~h~~d-------------------~~~~l~~i~r~Lkp---GG~l~i~~~ 275 (314)
-+.+|+|+.....-.... ...+++.+.+.+++ ||.+++...
T Consensus 494 ~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS 558 (681)
T PRK08324 494 LAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS 558 (681)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 135788876554322110 23456666777766 677776553
No 475
>KOG2691 consensus RNA polymerase II subunit 9 [Transcription]
Probab=81.92 E-value=0.95 Score=33.67 Aligned_cols=39 Identities=15% Similarity=0.242 Sum_probs=25.4
Q ss_pred CeeeccCCCccchh-cCCCCccccccccCceecCCCCccc
Q 021344 59 DLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTY 97 (314)
Q Consensus 59 ~~l~CP~C~~~l~~-~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (314)
..-.||.||..... ....+...+..++=.+.|.+|+|.|
T Consensus 72 s~~~C~~C~~~eavffQ~~~~r~d~~m~l~yvC~~C~h~w 111 (113)
T KOG2691|consen 72 SDKHCPKCGHREAVFFQAQTRRADEAMRLFYVCCSCGHRW 111 (113)
T ss_pred ccccCCccCCcceEEEecccccccceEEEEEEeccccccc
Confidence 56679999985322 1222334455555678899999987
No 476
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=81.73 E-value=6.9 Score=34.90 Aligned_cols=59 Identities=12% Similarity=0.151 Sum_probs=48.0
Q ss_pred hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc
Q 021344 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD 213 (314)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~ 213 (314)
.+..+..... ...++..|||.=+|+|..+......+. .++|+|+++..++.+.+++...
T Consensus 209 ~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r--~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 209 LALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGR--RFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred HHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCC--ceEEEecCHHHHHHHHHHHHhh
Confidence 3444444444 455789999999999999998888876 9999999999999999988764
No 477
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=81.72 E-value=18 Score=32.80 Aligned_cols=98 Identities=13% Similarity=0.105 Sum_probs=58.8
Q ss_pred hccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---CCCCc
Q 021344 162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGF 237 (314)
Q Consensus 162 l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp---~~~~~ 237 (314)
+...++.+||-.|+|. |..+..+++.. +.+++.++.++...+.+++. + . -.++...-.... ...+.
T Consensus 159 ~~~~~~~~vlV~g~g~iG~~~~~~a~~~-G~~vi~~~~~~~~~~~~~~~----g----~-~~~i~~~~~~~~~~~~~~~~ 228 (333)
T cd08296 159 SGAKPGDLVAVQGIGGLGHLAVQYAAKM-GFRTVAISRGSDKADLARKL----G----A-HHYIDTSKEDVAEALQELGG 228 (333)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHc----C----C-cEEecCCCccHHHHHHhcCC
Confidence 3556678999999765 66666666664 34899999998877777551 1 1 111111111100 00124
Q ss_pred hhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344 238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 238 fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
+|+|+.. ... ...+....+.|+++|.++....
T Consensus 229 ~d~vi~~-----~g~-~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 229 AKLILAT-----APN-AKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred CCEEEEC-----CCc-hHHHHHHHHHcccCCEEEEEec
Confidence 6777642 111 3467888999999999987653
No 478
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=81.64 E-value=5.6 Score=30.33 Aligned_cols=89 Identities=19% Similarity=0.247 Sum_probs=56.6
Q ss_pred CCeEEEEcCccc-HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC-CCchhhheec
Q 021344 167 GGLLVDVSCGSG-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAG 244 (314)
Q Consensus 167 ~~~iLDiGcG~G-~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~-~~~fD~V~~~ 244 (314)
.++|+++|-|-= ..+..|+++|. .++++|+.+. .+ ...++++.-|+.+.... -...|+|.+.
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~--dv~atDI~~~---~a-----------~~g~~~v~DDitnP~~~iY~~A~lIYSi 77 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGF--DVLATDINEK---TA-----------PEGLRFVVDDITNPNISIYEGADLIYSI 77 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCC--cEEEEecccc---cC-----------cccceEEEccCCCccHHHhhCccceeec
Confidence 459999998763 35677788775 9999999886 11 25688999998773311 1246777764
Q ss_pred chhccCCCHHHHHHHHHhhccc-CcEEEEEeccc
Q 021344 245 AALHCWPSPSNAVAEISRILRS-GGVFVGTTFLR 277 (314)
Q Consensus 245 ~vl~h~~d~~~~l~~i~r~Lkp-GG~l~i~~~~~ 277 (314)
..|..+.+.+.++-+. |..+++.....
T Consensus 78 ------RpppEl~~~ildva~aVga~l~I~pL~G 105 (129)
T COG1255 78 ------RPPPELQSAILDVAKAVGAPLYIKPLTG 105 (129)
T ss_pred ------CCCHHHHHHHHHHHHhhCCCEEEEecCC
Confidence 2344445555554443 45566655443
No 479
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=81.62 E-value=0.74 Score=37.42 Aligned_cols=34 Identities=21% Similarity=0.460 Sum_probs=24.9
Q ss_pred cCCCCeeeccCCCccchhcCCCCccccccccCceecCCCCcc
Q 021344 55 ELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (314)
Q Consensus 55 ~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~ 96 (314)
......+.||.|+......+ .....+.|+.||..
T Consensus 104 e~~~~~Y~Cp~c~~r~tf~e--------A~~~~F~Cp~Cg~~ 137 (158)
T TIGR00373 104 ETNNMFFICPNMCVRFTFNE--------AMELNFTCPRCGAM 137 (158)
T ss_pred ccCCCeEECCCCCcEeeHHH--------HHHcCCcCCCCCCE
Confidence 34557899999998775533 23458999999855
No 480
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=81.50 E-value=4.8 Score=36.04 Aligned_cols=41 Identities=29% Similarity=0.522 Sum_probs=31.8
Q ss_pred CeEEEEcCcc-c-HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHH
Q 021344 168 GLLVDVSCGS-G-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFI 210 (314)
Q Consensus 168 ~~iLDiGcG~-G-~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~ 210 (314)
.+|.-||+|. | .++..++..|. +|+.+|.++..++.+++.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i 46 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY--DVTIVDVSEEILKNAMELI 46 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHH
Confidence 4688899996 4 46666677765 8999999999988776543
No 481
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=81.39 E-value=21 Score=32.90 Aligned_cols=100 Identities=17% Similarity=0.165 Sum_probs=58.8
Q ss_pred HhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCC--CC-----C
Q 021344 161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC--RL-----P 232 (314)
Q Consensus 161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~--~l-----p 232 (314)
.....++.+||-.|+|. |..+..+++......+++++.++...+.+++ +.. ..++...-. .. .
T Consensus 178 ~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~-~g~--------~~~v~~~~~~~~~~~~l~~ 248 (365)
T cd05279 178 TAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ-LGA--------TECINPRDQDKPIVEVLTE 248 (365)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-hCC--------CeecccccccchHHHHHHH
Confidence 33456688888888765 6666666666433358899988888777754 211 111111101 00 0
Q ss_pred CCCCchhhheecchhccCCCHHHHHHHHHhhcc-cCcEEEEEec
Q 021344 233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILR-SGGVFVGTTF 275 (314)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~Lk-pGG~l~i~~~ 275 (314)
...+.+|+|+.. ... ...+....+.|+ ++|.++....
T Consensus 249 ~~~~~~d~vid~-----~g~-~~~~~~~~~~l~~~~G~~v~~g~ 286 (365)
T cd05279 249 MTDGGVDYAFEV-----IGS-ADTLKQALDATRLGGGTSVVVGV 286 (365)
T ss_pred HhCCCCcEEEEC-----CCC-HHHHHHHHHHhccCCCEEEEEec
Confidence 112357777642 222 245778888999 9999987653
No 482
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=81.16 E-value=19 Score=32.56 Aligned_cols=98 Identities=17% Similarity=0.224 Sum_probs=58.8
Q ss_pred HhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC---C-CC-
Q 021344 161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR---L-PF- 233 (314)
Q Consensus 161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~---l-p~- 233 (314)
.....++.+||-.|+|. |..+..+++.. +.+ +++++-++...+.+++. + . ..++...-.. + ..
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~-G~~~v~~~~~~~~~~~~l~~~----g----~-~~~~~~~~~~~~~~~~~~ 223 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKIL-GAKRVIAVDIDDEKLAVAREL----G----A-DDTINPKEEDVEKVRELT 223 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHc----C----C-CEEecCccccHHHHHHHh
Confidence 34455678899998766 77777777664 234 99999888776666431 1 1 1112111000 0 11
Q ss_pred CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
....+|+|+... .....+..+.+.|+++|.++...
T Consensus 224 ~~~~~d~vld~~------g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 224 EGRGADLVIEAA------GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CCCCCCEEEECC------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 123488887531 12346788899999999988765
No 483
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=81.03 E-value=27 Score=32.09 Aligned_cols=95 Identities=20% Similarity=0.203 Sum_probs=56.3
Q ss_pred CCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC------CCCCCc
Q 021344 165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL------PFASGF 237 (314)
Q Consensus 165 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l------p~~~~~ 237 (314)
.++.+||-.|+|. |..+..+++......+++++.++...+.+++. + . ..++..+-... ......
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~----g----~-~~v~~~~~~~~~~~l~~~~~~~~ 256 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKEL----G----A-THTVNAAKEDAVAAIREITGGRG 256 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----C----C-ceEecCCcccHHHHHHHHhCCCC
Confidence 5677888777653 66666677664322399999888877766541 1 0 11222111110 012345
Q ss_pred hhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 238 fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
+|+|+.. +... ..+.++.+.|+++|.++...
T Consensus 257 ~d~vld~-----vg~~-~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 257 VDVVVEA-----LGKP-ETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred CCEEEEe-----CCCH-HHHHHHHHHHhcCCEEEEEc
Confidence 7877643 2222 35788889999999998764
No 484
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=80.88 E-value=1.3 Score=23.69 Aligned_cols=9 Identities=33% Similarity=0.992 Sum_probs=6.3
Q ss_pred CceecCCCC
Q 021344 86 SGFKCRKCD 94 (314)
Q Consensus 86 ~~l~C~~C~ 94 (314)
..+.|++||
T Consensus 15 v~f~CPnCG 23 (24)
T PF07754_consen 15 VPFPCPNCG 23 (24)
T ss_pred ceEeCCCCC
Confidence 467777776
No 485
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=80.71 E-value=0.93 Score=28.09 Aligned_cols=13 Identities=23% Similarity=0.813 Sum_probs=9.9
Q ss_pred CceecCCCCcccc
Q 021344 86 SGFKCRKCDKTYS 98 (314)
Q Consensus 86 ~~l~C~~C~~~~~ 98 (314)
..+.|++||..+.
T Consensus 31 p~~~C~~CGE~~~ 43 (46)
T TIGR03831 31 PALVCPQCGEEYL 43 (46)
T ss_pred CccccccCCCEee
Confidence 4567999998764
No 486
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=80.68 E-value=17 Score=27.19 Aligned_cols=88 Identities=16% Similarity=0.110 Sum_probs=53.1
Q ss_pred EEEcCcccHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----CCCCchhhheec
Q 021344 171 VDVSCGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDAVHAG 244 (314)
Q Consensus 171 LDiGcG~G~~~~~l~~~~--~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp----~~~~~fD~V~~~ 244 (314)
+=+|+| .++..+++.. ...+++.+|.++..++.+++ ..+.++.+|..+.. ..-++.|.|++.
T Consensus 2 vI~G~g--~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----------~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~ 69 (116)
T PF02254_consen 2 VIIGYG--RIGREIAEQLKEGGIDVVVIDRDPERVEELRE----------EGVEVIYGDATDPEVLERAGIEKADAVVIL 69 (116)
T ss_dssp EEES-S--HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----------TTSEEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred EEEcCC--HHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----------cccccccccchhhhHHhhcCccccCEEEEc
Confidence 345554 4444443331 12489999999999888887 45889999997642 112346655553
Q ss_pred chhccCCCHH--HHHHHHHhhcccCcEEEEEec
Q 021344 245 AALHCWPSPS--NAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 245 ~vl~h~~d~~--~~l~~i~r~LkpGG~l~i~~~ 275 (314)
. ++.. ..+....+.+.|...++....
T Consensus 70 ~-----~~d~~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 70 T-----DDDEENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp S-----SSHHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred c-----CCHHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 2 2343 344455566778888887763
No 487
>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]
Probab=80.64 E-value=0.52 Score=34.41 Aligned_cols=41 Identities=17% Similarity=0.334 Sum_probs=27.4
Q ss_pred CCCeeeccCCCccc-hhcCCCCccccccccCceecCCCCccc
Q 021344 57 EGDLFSCPICYEPL-IRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (314)
Q Consensus 57 ~~~~l~CP~C~~~l-~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (314)
....-.||.||.+- .....+....++.+...++|.+|++.|
T Consensus 62 ~~t~~~Cp~Cgh~rayF~qlQtRSADEPmT~FYkC~~C~~~W 103 (105)
T KOG2906|consen 62 DQTEATCPTCGHERAYFMQLQTRSADEPMTTFYKCCKCKHRW 103 (105)
T ss_pred hhccCcCCCCCCCceEEEEeeeccCCCcHhHhhhhhcccccc
Confidence 34566799999862 112222334567777889999999886
No 488
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=80.59 E-value=19 Score=33.45 Aligned_cols=97 Identities=16% Similarity=0.178 Sum_probs=58.8
Q ss_pred ccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEe------cC----CCC
Q 021344 163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA------DV----CRL 231 (314)
Q Consensus 163 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~------d~----~~l 231 (314)
...++.+||-.|+|. |..+..+++......+++++.++...+.+++. + .. .++.. +. ..+
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~----g----~~-~~v~~~~~~~~~~~~~v~~~ 270 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEM----G----AD-YVFNPTKMRDCLSGEKVMEV 270 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----C----CC-EEEcccccccccHHHHHHHh
Confidence 445678888888765 66666666664333799999888766666552 1 11 11111 00 011
Q ss_pred CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
.....+|+|+.. ..++...+.++.+.|+++|+++...
T Consensus 271 -~~g~gvDvvld~-----~g~~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 271 -TKGWGADIQVEA-----AGAPPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred -cCCCCCCEEEEC-----CCCcHHHHHHHHHHHHcCCEEEEEC
Confidence 112357877643 3344566888899999999998764
No 489
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.52 E-value=8.4 Score=34.26 Aligned_cols=98 Identities=15% Similarity=0.173 Sum_probs=56.9
Q ss_pred eEEEEcCcc--cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh-------cCCCC-------CCCeEEEEecCCCCC
Q 021344 169 LLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ-------DNTIL-------TSNLALVRADVCRLP 232 (314)
Q Consensus 169 ~iLDiGcG~--G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~-------~~~~~-------~~~v~~~~~d~~~lp 232 (314)
+|--||+|. +.++..++..+. +|+++|.+++.++.++++++. .+... ..++.+ ..|...
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~-- 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY--DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD-- 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH--
Confidence 678899996 556777777765 899999999988765533222 11000 002221 222211
Q ss_pred CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
-+..|+|+..- -+.+.-...+++++.+.++|+..+...+
T Consensus 80 --~~~aDlVi~av-~e~~~~k~~~~~~l~~~~~~~~il~s~t 118 (282)
T PRK05808 80 --LKDADLVIEAA-TENMDLKKKIFAQLDEIAKPEAILATNT 118 (282)
T ss_pred --hccCCeeeecc-cccHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 13467766532 1221122478999999999988774333
No 490
>PRK10083 putative oxidoreductase; Provisional
Probab=80.41 E-value=20 Score=32.40 Aligned_cols=97 Identities=12% Similarity=0.080 Sum_probs=57.3
Q ss_pred HhccCCCCeEEEEcCcc-cHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----C
Q 021344 161 YFKSAQGGLLVDVSCGS-GLFSRKFAKS--GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----F 233 (314)
Q Consensus 161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~--~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp----~ 233 (314)
.....++.+||-.|+|. |..+..+++. | ...++++|.++...+.+++. .++.+. +..+.. .
T Consensus 155 ~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G-~~~v~~~~~~~~~~~~~~~~----------Ga~~~i-~~~~~~~~~~~ 222 (339)
T PRK10083 155 RTGPTEQDVALIYGAGPVGLTIVQVLKGVYN-VKAVIVADRIDERLALAKES----------GADWVI-NNAQEPLGEAL 222 (339)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHh----------CCcEEe-cCccccHHHHH
Confidence 34456788999999765 6666667663 4 23588899999888777652 111111 111100 0
Q ss_pred CCC--chhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344 234 ASG--FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (314)
Q Consensus 234 ~~~--~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~ 275 (314)
... .+|+|+. .... ...+.+..+.|+++|.++....
T Consensus 223 ~~~g~~~d~vid-----~~g~-~~~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 223 EEKGIKPTLIID-----AACH-PSILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred hcCCCCCCEEEE-----CCCC-HHHHHHHHHHhhcCCEEEEEcc
Confidence 111 2344443 2222 2357888899999999988654
No 491
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=80.39 E-value=0.65 Score=39.49 Aligned_cols=92 Identities=13% Similarity=0.080 Sum_probs=66.1
Q ss_pred HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-
Q 021344 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP- 232 (314)
Q Consensus 154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp- 232 (314)
+...+.+++.+.++...+|.--|.|..+..+.+..+..+++++|-+|-+-+.|+....+.- ...+..+.+.+..++
T Consensus 31 m~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el~---~~~l~a~Lg~Fs~~~~ 107 (303)
T KOG2782|consen 31 MLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDELM---HPTLKAVLGNFSYIKS 107 (303)
T ss_pred ehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhhc---chhHHHHHhhhHHHHH
Confidence 3456677888889999999999999999999998888899999999988888877654321 123333444444332
Q ss_pred ------CCCCchhhheecchhc
Q 021344 233 ------FASGFVDAVHAGAALH 248 (314)
Q Consensus 233 ------~~~~~fD~V~~~~vl~ 248 (314)
+.+.++|.|++.....
T Consensus 108 l~~~~gl~~~~vDGiLmDlGcS 129 (303)
T KOG2782|consen 108 LIADTGLLDVGVDGILMDLGCS 129 (303)
T ss_pred HHHHhCCCcCCcceEEeecCcc
Confidence 4567788888755443
No 492
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=80.33 E-value=12 Score=33.64 Aligned_cols=92 Identities=13% Similarity=0.134 Sum_probs=53.5
Q ss_pred CCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344 166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (314)
Q Consensus 166 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~ 244 (314)
.+.+++-+|.|. |..+...++.. +.+|+++|.++...+.++. ...+++ ++..+.-.-..+|+|+..
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~-Ga~V~v~~r~~~~~~~~~~----------~G~~~~--~~~~l~~~l~~aDiVI~t 217 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL-GANVTVGARKSAHLARITE----------MGLSPF--HLSELAEEVGKIDIIFNT 217 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHH----------cCCeee--cHHHHHHHhCCCCEEEEC
Confidence 578999999987 54444443332 3499999999876655543 122222 111221112358998864
Q ss_pred chhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 245 ~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
- +. ..+-++..+.++||++++-....
T Consensus 218 ~-----p~-~~i~~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 218 I-----PA-LVLTKEVLSKMPPEALIIDLASK 243 (296)
T ss_pred C-----Ch-hhhhHHHHHcCCCCcEEEEEccC
Confidence 2 21 22345666788998887754433
No 493
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=80.09 E-value=4.3 Score=33.65 Aligned_cols=94 Identities=13% Similarity=0.152 Sum_probs=51.0
Q ss_pred HHHHHhccCCCC-eEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---
Q 021344 157 MAQEYFKSAQGG-LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--- 232 (314)
Q Consensus 157 ~l~~~l~~~~~~-~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--- 232 (314)
.+.+++...++. .|+.+|||-=.....+....+...++-+|. +++++.-++.++..+.....+.+++.+|+.+..
T Consensus 68 ~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~ 146 (183)
T PF04072_consen 68 AVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWID 146 (183)
T ss_dssp HHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHH
T ss_pred HHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHH
Confidence 444455433444 899999998777666766544457777776 556666666666542100123557888987622
Q ss_pred ------CCCCchhhheecchhccCC
Q 021344 233 ------FASGFVDAVHAGAALHCWP 251 (314)
Q Consensus 233 ------~~~~~fD~V~~~~vl~h~~ 251 (314)
+..+.--++++-.++.+++
T Consensus 147 ~L~~~g~~~~~ptl~i~Egvl~Yl~ 171 (183)
T PF04072_consen 147 ALPKAGFDPDRPTLFIAEGVLMYLS 171 (183)
T ss_dssp HHHHCTT-TTSEEEEEEESSGGGS-
T ss_pred HHHHhCCCCCCCeEEEEcchhhcCC
Confidence 1122333566666777764
No 494
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=80.06 E-value=36 Score=31.39 Aligned_cols=118 Identities=15% Similarity=0.139 Sum_probs=61.4
Q ss_pred hHHHHHHHHHhccCCCCeEEEEcCcccHHH------HHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEE
Q 021344 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFS------RKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225 (314)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~------~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~ 225 (314)
+.....+.+.+... ...++-.=||.|-.- ......|. .|--.-+--+.+-....+++..- ....|....
T Consensus 103 ~~as~~l~q~i~~k-~~~lv~AV~GaGKTEMif~~i~~al~~G~--~vciASPRvDVclEl~~Rlk~aF--~~~~I~~Ly 177 (441)
T COG4098 103 KKASNQLVQYIKQK-EDTLVWAVTGAGKTEMIFQGIEQALNQGG--RVCIASPRVDVCLELYPRLKQAF--SNCDIDLLY 177 (441)
T ss_pred HHHHHHHHHHHHhc-CcEEEEEecCCCchhhhHHHHHHHHhcCC--eEEEecCcccchHHHHHHHHHhh--ccCCeeeEe
Confidence 33445566666654 446777778888532 12222342 44333332222222223333321 235677777
Q ss_pred ecCCCC---C-----------CCCCchhhheecch--hccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344 226 ADVCRL---P-----------FASGFVDAVHAGAA--LHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (314)
Q Consensus 226 ~d~~~l---p-----------~~~~~fD~V~~~~v--l~h~~d~~~~l~~i~r~LkpGG~l~i~~~~ 276 (314)
+|-... | | .+.||+++...| +-+..|+ .+--.+.+..|++|..+..+-.
T Consensus 178 g~S~~~fr~plvVaTtHQLlrF-k~aFD~liIDEVDAFP~~~d~-~L~~Av~~ark~~g~~IylTAT 242 (441)
T COG4098 178 GDSDSYFRAPLVVATTHQLLRF-KQAFDLLIIDEVDAFPFSDDQ-SLQYAVKKARKKEGATIYLTAT 242 (441)
T ss_pred cCCchhccccEEEEehHHHHHH-HhhccEEEEeccccccccCCH-HHHHHHHHhhcccCceEEEecC
Confidence 775431 1 2 246999998665 3333333 4445566778888877766643
No 495
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=79.79 E-value=1.7 Score=25.94 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=18.7
Q ss_pred eeccCCCccchhcCCCCccccccccCceecCCCCc
Q 021344 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK 95 (314)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~ 95 (314)
-.||.|++.-... .. +.-..+.+.|.+|+.
T Consensus 4 ~pCP~CGG~DrFr-~~----d~~g~G~~~C~~Cg~ 33 (37)
T smart00778 4 GPCPNCGGSDRFR-FD----DKDGRGTWFCSVCGA 33 (37)
T ss_pred cCCCCCCCccccc-cc----cCCCCcCEEeCCCCC
Confidence 3599999964332 11 112237899999964
No 496
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=79.78 E-value=1.4 Score=32.67 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=21.0
Q ss_pred CeeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (314)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (314)
.++.||.|++........ . -.....|..||..+
T Consensus 20 t~f~CP~Cge~~v~v~~~-k-----~~~h~~C~~CG~y~ 52 (99)
T PRK14892 20 KIFECPRCGKVSISVKIK-K-----NIAIITCGNCGLYT 52 (99)
T ss_pred cEeECCCCCCeEeeeecC-C-----CcceEECCCCCCcc
Confidence 588999999632211100 0 13678999998776
No 497
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=79.51 E-value=22 Score=32.29 Aligned_cols=92 Identities=23% Similarity=0.195 Sum_probs=56.2
Q ss_pred CCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-------CCCCc
Q 021344 166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------FASGF 237 (314)
Q Consensus 166 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-------~~~~~ 237 (314)
++.+||-.|+|. |..+..+++......+++++.++...+.+++. ++..+. +..... ...+.
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----------g~~~~~-~~~~~~~~~~~~~~~~~~ 243 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAA----------GADVVV-NGSDPDAAKRIIKAAGGG 243 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----------CCcEEe-cCCCccHHHHHHHHhCCC
Confidence 577888888765 66777777765333788999888877777541 111111 111111 11124
Q ss_pred hhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344 238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (314)
Q Consensus 238 fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~ 274 (314)
+|+|+.. ... ...+.+..+.|+++|.++...
T Consensus 244 ~d~vid~-----~g~-~~~~~~~~~~l~~~g~~v~~g 274 (350)
T cd08240 244 VDAVIDF-----VNN-SATASLAFDILAKGGKLVLVG 274 (350)
T ss_pred CcEEEEC-----CCC-HHHHHHHHHHhhcCCeEEEEC
Confidence 6666642 222 346888999999999998654
No 498
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=79.50 E-value=1.2 Score=30.50 Aligned_cols=29 Identities=21% Similarity=0.460 Sum_probs=20.5
Q ss_pred eeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (314)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (314)
.-.||.||....... ....+.|+.||..+
T Consensus 28 Sq~C~~CG~~~~~~~---------~~r~~~C~~Cg~~~ 56 (69)
T PF07282_consen 28 SQTCPRCGHRNKKRR---------SGRVFTCPNCGFEM 56 (69)
T ss_pred ccCccCccccccccc---------ccceEEcCCCCCEE
Confidence 446999999765411 22689999998764
No 499
>TIGR01385 TFSII transcription elongation factor S-II. This model represents eukaryotic transcription elongation factor S-II. This protein allows stalled RNA transcription complexes to perform a cleavage of the nascent RNA and restart at the newly generated 3-prime end.
Probab=79.48 E-value=1.1 Score=40.44 Aligned_cols=41 Identities=17% Similarity=0.357 Sum_probs=27.3
Q ss_pred CCCeeeccCCCccchhc-CCCCccccccccCceecCCCCccc
Q 021344 57 EGDLFSCPICYEPLIRK-GPTGLTLGAIYRSGFKCRKCDKTY 97 (314)
Q Consensus 57 ~~~~l~CP~C~~~l~~~-~~~~~~~~~i~~~~l~C~~C~~~~ 97 (314)
..+.+.||.|++..... ..+....++.+.-++.|..||+.|
T Consensus 255 ~t~~~~C~~C~~~~~~~~q~QtrsaDEpmT~f~~C~~Cg~~w 296 (299)
T TIGR01385 255 VTDLFTCGKCKQKKCTYYQLQTRSADEPMTTFVTCEECGNRW 296 (299)
T ss_pred CcccccCCCCCCccceEEEecccCCCCCCeEEEEcCCCCCee
Confidence 56789999999864221 111223455566788999999876
No 500
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=79.44 E-value=2.1 Score=25.40 Aligned_cols=31 Identities=19% Similarity=0.605 Sum_probs=18.8
Q ss_pred eeeccCCCccc-hhcCCCCccccccccCceecCCCC
Q 021344 60 LFSCPICYEPL-IRKGPTGLTLGAIYRSGFKCRKCD 94 (314)
Q Consensus 60 ~l~CP~C~~~l-~~~~~~~~~~~~i~~~~l~C~~C~ 94 (314)
...||.|++.. ...... +..-.+.++|..|.
T Consensus 5 ~v~CP~C~s~~~v~k~G~----~~~G~qryrC~~C~ 36 (36)
T PF03811_consen 5 DVHCPRCQSTEGVKKNGK----SPSGHQRYRCKDCR 36 (36)
T ss_pred eeeCCCCCCCCcceeCCC----CCCCCEeEecCcCC
Confidence 46799999976 332211 11222578899883
Done!