Query 021345
Match_columns 314
No_of_seqs 123 out of 220
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 16:17:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021345.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021345hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4day_C Fanconi anemia group M 29.0 16 0.00056 24.3 0.7 20 213-232 13-32 (37)
2 2yy8_A ATRM56, UPF0106 protein 11.3 72 0.0025 28.5 0.9 23 133-155 140-165 (201)
3 2o3a_A UPF0106 protein AF_0751 9.1 1.2E+02 0.004 26.7 1.4 22 133-155 137-161 (178)
4 3zyw_A Glutaredoxin-3; metal b 8.3 1.8E+02 0.0063 22.2 2.2 55 162-219 8-78 (111)
5 3l4n_A Monothiol glutaredoxin- 7.9 2.2E+02 0.0074 22.6 2.5 56 163-219 7-77 (127)
6 3bqa_A Sensor protein PHOQ; hi 7.6 92 0.0032 26.5 0.1 21 182-202 70-90 (148)
7 2zou_A Spondin-1; beta-sandwic 7.0 1.6E+02 0.0055 24.3 1.4 24 220-243 54-80 (149)
8 3iz5_n 60S ribosomal protein L 6.7 2.1E+02 0.0073 21.3 1.7 14 38-51 30-43 (69)
9 3izc_n 60S ribosomal protein R 6.5 2E+02 0.0068 22.0 1.5 14 38-51 39-52 (78)
10 3dwl_E Actin-related protein 2 6.3 1.1E+02 0.0038 26.7 0.0 37 104-140 99-135 (174)
No 1
>4day_C Fanconi anemia group M protein; OB fold, protein binding-hydrolase complex; 3.30A {Homo sapiens}
Probab=28.98 E-value=16 Score=24.35 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=15.2
Q ss_pred cceEEEeeeEeeccCCCCcc
Q 021345 213 ITTLTVDLAFLLESQTESEL 232 (314)
Q Consensus 213 ~k~LvvD~gFvIEG~~eeEL 232 (314)
+=++..|+||.++...+|.+
T Consensus 13 LFSVnFDLGf~~~dSDde~~ 32 (37)
T 4day_C 13 LFSVTFDLGFCSPDSDDEIL 32 (37)
T ss_pred eEEEEeccccccCCcchhhh
Confidence 34689999999998775544
No 2
>2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus horikoshii}
Probab=11.30 E-value=72 Score=28.47 Aligned_cols=23 Identities=30% Similarity=0.739 Sum_probs=19.6
Q ss_pred hhHHHHhhC---ChhhhccceeEEee
Q 021345 133 SLVDRFLKG---DDAFRLSRLKLIAN 155 (314)
Q Consensus 133 ~Ll~rFl~G---DD~fRN~RfKLIp~ 155 (314)
-+|+|++.| +-+|-|.++|+||.
T Consensus 140 vFLDrl~~G~eL~~ef~~Ak~~ViP~ 165 (201)
T 2yy8_A 140 VLLDRLLEGKGLKKEFKGAKIKIVPQ 165 (201)
T ss_dssp HHHHHHTTTGGGGCCCSSCSEEECCC
T ss_pred HHHHHhcCCcchhhccCCCcEEEeec
Confidence 378888888 56999999999996
No 3
>2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Archaeoglobus fulgidus} SCOP: c.116.1.8
Probab=9.13 E-value=1.2e+02 Score=26.69 Aligned_cols=22 Identities=36% Similarity=0.673 Sum_probs=18.7
Q ss_pred hhHHHHhhC---ChhhhccceeEEee
Q 021345 133 SLVDRFLKG---DDAFRLSRLKLIAN 155 (314)
Q Consensus 133 ~Ll~rFl~G---DD~fRN~RfKLIp~ 155 (314)
-+|+|++ | +-+|-|.++|+||.
T Consensus 137 vFLDrl~-G~el~~~f~~ak~~ViP~ 161 (178)
T 2o3a_A 137 VFLDRVL-GKVFDISFDDAKIKVIPS 161 (178)
T ss_dssp HHHHHHT-CCTTTCCCTTCSSEEECC
T ss_pred HHHHHhh-chHHHhccCCCcEEEeec
Confidence 3688888 8 57999999999996
No 4
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=8.28 E-value=1.8e+02 Score=22.21 Aligned_cols=55 Identities=13% Similarity=0.109 Sum_probs=33.0
Q ss_pred HHHhhhCCCCceeeec-----ceeeeEEe---------cCCEEEEEEEccchHHHHHHHHHhhc--ccceEEEe
Q 021345 162 IVKKAVGEQAICVIGR-----ALSCNYCV---------GENFLEVDMDIGSSMVAKAIVHLAFG--YITTLTVD 219 (314)
Q Consensus 162 iVrkaVG~kp~~llGr-----~l~~~Y~~---------g~nYlEiDVDI~sS~vAr~il~l~~g--y~k~LvvD 219 (314)
.|++++.+.|+.|.+| + .|.|.+ |-.|-|+||+-. .-++.-+.-..| .+..+.||
T Consensus 8 ~v~~~i~~~~Vvlf~kg~~~~~-~Cp~C~~ak~~L~~~gi~y~~~di~~d--~~~~~~l~~~~g~~tvP~ifi~ 78 (111)
T 3zyw_A 8 RLKKLTHAAPCMLFMKGTPQEP-RCGFSKQMVEILHKHNIQFSSFDIFSD--EEVRQGLKAYSSWPTYPQLYVS 78 (111)
T ss_dssp HHHHHHTSSSEEEEESBCSSSB-SSHHHHHHHHHHHHTTCCCEEEEGGGC--HHHHHHHHHHHTCCSSCEEEET
T ss_pred HHHHHHhcCCEEEEEecCCCCC-cchhHHHHHHHHHHcCCCeEEEECcCC--HHHHHHHHHHHCCCCCCEEEEC
Confidence 3667788878777777 5 677763 567988877754 233333322223 45566665
No 5
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}
Probab=7.92 E-value=2.2e+02 Score=22.64 Aligned_cols=56 Identities=16% Similarity=0.336 Sum_probs=34.2
Q ss_pred HHhhhCCCCceeeecceeeeEEe------------cCCEEEEEEEccch-HHHHHHHHHhhcc--cceEEEe
Q 021345 163 VKKAVGEQAICVIGRALSCNYCV------------GENFLEVDMDIGSS-MVAKAIVHLAFGY--ITTLTVD 219 (314)
Q Consensus 163 VrkaVG~kp~~llGr~l~~~Y~~------------g~nYlEiDVDI~sS-~vAr~il~l~~gy--~k~LvvD 219 (314)
+++++...++.|.+++ .|.|.. +..|-++|||.... .-.+..+.-..|+ +..+.||
T Consensus 7 ~~~ii~~~~Vvvysk~-~Cp~C~~ak~lL~~~~~~~v~~~~idid~~~d~~~~~~~l~~~~G~~tVP~IfI~ 77 (127)
T 3l4n_A 7 YSLILDLSPIIIFSKS-TCSYSKGMKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPNLLVN 77 (127)
T ss_dssp HHHHHTSCSEEEEECT-TCHHHHHHHHHHHHHEEEESCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEET
T ss_pred HHHHHccCCEEEEEcC-CCccHHHHHHHHHHhcccCCCcEEEEecCCCCHHHHHHHHHHHcCCCCcceEEEC
Confidence 4556677777777776 566652 46799999998763 3334434333343 5556555
No 6
>3bqa_A Sensor protein PHOQ; histidine kinase sensor domain, ATP-binding, inner membrane, magnesium, membrane, metal-binding, nucleotide-binding; 2.00A {Escherichia coli} PDB: 3bq8_A 1yax_A
Probab=7.57 E-value=92 Score=26.53 Aligned_cols=21 Identities=14% Similarity=0.446 Sum_probs=16.2
Q ss_pred eEEecCCEEEEEEEccchHHH
Q 021345 182 NYCVGENFLEVDMDIGSSMVA 202 (314)
Q Consensus 182 ~Y~~g~nYlEiDVDI~sS~vA 202 (314)
.|-..++|+|||.|+..|...
T Consensus 70 eWLkk~gf~Eidtd~~~s~~~ 90 (148)
T 3bqa_A 70 DWLKSNGFHEIEADVNDTSLL 90 (148)
T ss_dssp GGSSSCEEEEEEEEHHHHHHH
T ss_pred HHhcCCCcEEEecCcchHHHH
Confidence 555667899999999986443
No 7
>2zou_A Spondin-1; beta-sandwich, extracellular protein, cell adhesion, extrace matrix, glycoprotein, secreted; 1.45A {Homo sapiens}
Probab=7.01 E-value=1.6e+02 Score=24.27 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=19.0
Q ss_pred eeEeeccCCCCcc---ccchhceeeec
Q 021345 220 LAFLLESQTESEL---PEQILGAFRFS 243 (314)
Q Consensus 220 ~gFvIEG~~eeEL---PE~lLG~vRl~ 243 (314)
.||+||++.++.. +...+|.+.+.
T Consensus 54 ~GFllqAr~~~~~~~~~~~~vG~F~~~ 80 (149)
T 2zou_A 54 RGFTLIALRENREGDKEEDHAGTFQII 80 (149)
T ss_dssp SEEEEEEEETTCCSCSGGGBCSEEEES
T ss_pred EEEEEEEEecCCccCCCCcceEEEEeC
Confidence 6999999887653 56789999865
No 8
>3iz5_n 60S ribosomal protein L38 (L38E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_n
Probab=6.65 E-value=2.1e+02 Score=21.35 Aligned_cols=14 Identities=36% Similarity=0.430 Sum_probs=10.9
Q ss_pred CCCceeeeCCCCcC
Q 021345 38 PGDMFMVRGPDYLS 51 (314)
Q Consensus 38 ~~~~F~VRG~~Yl~ 51 (314)
+-..|+||+..||-
T Consensus 30 ~~~KfKvRcsryLY 43 (69)
T 3iz5_n 30 DAVKFKVRCSKYLY 43 (69)
T ss_dssp SCCCCEECSSSCCC
T ss_pred CceEEEEEecCceE
Confidence 56778888888874
No 9
>3izc_n 60S ribosomal protein RPL38 (L38E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_n 3u5e_k 3u5i_k 4b6a_k
Probab=6.50 E-value=2e+02 Score=22.00 Aligned_cols=14 Identities=36% Similarity=0.432 Sum_probs=10.4
Q ss_pred CCCceeeeCCCCcC
Q 021345 38 PGDMFMVRGPDYLS 51 (314)
Q Consensus 38 ~~~~F~VRG~~Yl~ 51 (314)
+-..|+||+..||-
T Consensus 39 ~~tKFKvRcsryLY 52 (78)
T 3izc_n 39 RQTKFKVRGSSSLY 52 (78)
T ss_dssp CCCEEEEEESSCCC
T ss_pred cceEEEEEeccceE
Confidence 35678888888874
No 10
>3dwl_E Actin-related protein 2/3 complex subunit 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=6.28 E-value=1.1e+02 Score=26.70 Aligned_cols=37 Identities=11% Similarity=0.292 Sum_probs=0.0
Q ss_pred EEEEEEEecCCCCceEEEEeeeCCCCCCchhHHHHhh
Q 021345 104 VWAFNLQVPSKENYSAIAYFVATKPIPEGSLVDRFLK 140 (314)
Q Consensus 104 ~fiVNlqvP~~p~~slV~Yf~~~e~~p~~~Ll~rFl~ 140 (314)
+=+=||-+||.+++-+-.+|..+..-.+..+|..|+.
T Consensus 99 lal~~F~iPGd~gFpLn~~y~~P~~~~e~d~lR~Yl~ 135 (174)
T 3dwl_E 99 LALENFSIPGSAGFPLNALYAPPLSPQDAEIMRTYLT 135 (174)
T ss_dssp -------------------------------------
T ss_pred HHHhcCCCCCCCCCCccccccCCCChhHHHHHHHHHH
Confidence 3344788999999999888887654444455555553
Done!