Query 021346
Match_columns 314
No_of_seqs 235 out of 1495
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 16:18:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021346.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021346hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j21_g 50S ribosomal protein L 63.2 3.9 0.00013 28.2 2.1 28 29-56 13-40 (51)
2 2ayj_A 50S ribosomal protein L 59.9 4.6 0.00016 28.4 2.0 28 29-56 18-45 (56)
3 1wfk_A Zinc finger, FYVE domai 47.9 7.7 0.00026 29.3 1.7 28 26-53 5-34 (88)
4 1joc_A EEA1, early endosomal a 38.4 13 0.00045 29.8 1.8 24 30-53 69-94 (125)
5 1x4u_A Zinc finger, FYVE domai 34.5 16 0.00056 27.0 1.6 23 31-53 15-39 (84)
6 2dkt_A Ring finger and CHY zin 34.2 15 0.00053 30.4 1.6 46 24-69 77-126 (143)
7 3zyq_A Hepatocyte growth facto 33.7 21 0.00073 31.3 2.6 24 30-53 164-189 (226)
8 1dvp_A HRS, hepatocyte growth 31.7 18 0.0006 31.6 1.6 23 31-53 162-186 (220)
9 1vfy_A Phosphatidylinositol-3- 30.8 18 0.00062 26.1 1.3 22 32-53 13-36 (73)
10 1z2q_A LM5-1; membrane protein 30.0 23 0.00077 26.3 1.8 24 30-53 21-46 (84)
11 2yw8_A RUN and FYVE domain-con 29.8 22 0.00076 26.2 1.7 24 30-53 19-44 (82)
12 2cr8_A MDM4 protein; ZF-ranbp 25.5 30 0.001 23.8 1.5 23 30-52 11-33 (53)
13 3u5e_m 60S ribosomal protein L 25.3 33 0.0011 27.1 2.1 24 30-53 93-118 (128)
14 3t7l_A Zinc finger FYVE domain 23.6 34 0.0012 25.7 1.8 24 30-53 20-45 (90)
15 2pg3_A Queuosine biosynthesis 21.6 19 0.00066 31.0 -0.0 18 39-56 190-207 (232)
16 2apo_B Ribosome biogenesis pro 21.3 47 0.0016 23.5 1.9 23 28-52 4-26 (60)
17 2c6a_A Ubiquitin-protein ligas 21.2 41 0.0014 22.5 1.5 23 30-52 13-35 (46)
18 2vrw_B P95VAV, VAV1, proto-onc 20.4 30 0.001 32.5 1.1 27 29-55 356-385 (406)
19 3gj3_B Nuclear pore complex pr 20.3 49 0.0017 20.5 1.7 21 31-51 8-28 (33)
No 1
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=63.24 E-value=3.9 Score=28.18 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=23.8
Q ss_pred cceecccCCcccCCCCCCCccCCccccC
Q 021346 29 RVKYCDTCMLYRPPRCSHCSICNNCVER 56 (314)
Q Consensus 29 ~~k~C~tC~~~rPpRs~HCs~C~~CV~r 56 (314)
..+.|..|...-|+++..|..|+.--+|
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSCCCE
T ss_pred CCccCCCCCCcCCCCceecCCCCCcccc
Confidence 4578999999999999999999876443
No 2
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=59.86 E-value=4.6 Score=28.37 Aligned_cols=28 Identities=29% Similarity=0.603 Sum_probs=23.5
Q ss_pred cceecccCCcccCCCCCCCccCCccccC
Q 021346 29 RVKYCDTCMLYRPPRCSHCSICNNCVER 56 (314)
Q Consensus 29 ~~k~C~tC~~~rPpRs~HCs~C~~CV~r 56 (314)
..+.|..|...-|+|+.-|+.|+..-+|
T Consensus 18 ~k~ICrkC~ARnp~~A~~CRKCg~~~LR 45 (56)
T 2ayj_A 18 LKKVCRKCGALNPIRATKCRRCHSTNLR 45 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCCCCEE
T ss_pred chhhhccccCcCCcccccccCCCCCCCC
Confidence 4578999999999999999998865443
No 3
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=47.89 E-value=7.7 Score=29.33 Aligned_cols=28 Identities=14% Similarity=0.242 Sum_probs=19.7
Q ss_pred ccccceecccCCcc--cCCCCCCCccCCcc
Q 021346 26 VPVRVKYCDTCMLY--RPPRCSHCSICNNC 53 (314)
Q Consensus 26 ~~~~~k~C~tC~~~--rPpRs~HCs~C~~C 53 (314)
-+.....|..|... --.|-|||+.|++-
T Consensus 5 ~~~~~~~C~~C~~~F~~~~RrHHCR~CG~v 34 (88)
T 1wfk_A 5 SSGMESRCYGCAVKFTLFKKEYGCKNCGRA 34 (88)
T ss_dssp CCCCCSBCTTTCCBCCSSSCEEECSSSCCE
T ss_pred CCCcCCCCcCcCCcccCccccccCCCCCCE
Confidence 34455678888764 34588999999873
No 4
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=38.37 E-value=13 Score=29.84 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=17.4
Q ss_pred ceecccCCcc--cCCCCCCCccCCcc
Q 021346 30 VKYCDTCMLY--RPPRCSHCSICNNC 53 (314)
Q Consensus 30 ~k~C~tC~~~--rPpRs~HCs~C~~C 53 (314)
...|..|... --.|-|||+.||+-
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~v 94 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNI 94 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCE
T ss_pred CCCCcCcCCccccccccccCCCCCeE
Confidence 3568888764 24588999999873
No 5
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.46 E-value=16 Score=27.02 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=16.4
Q ss_pred eecccCCcc--cCCCCCCCccCCcc
Q 021346 31 KYCDTCMLY--RPPRCSHCSICNNC 53 (314)
Q Consensus 31 k~C~tC~~~--rPpRs~HCs~C~~C 53 (314)
..|..|... --.|-|||+.|++-
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~v 39 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNS 39 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCE
T ss_pred CcCcCcCCccccchhhhhhcCCCcE
Confidence 468777653 34588999999873
No 6
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=34.17 E-value=15 Score=30.45 Aligned_cols=46 Identities=26% Similarity=0.543 Sum_probs=33.2
Q ss_pred cCccccceecccCCcccCC-CCCCCccCCccccCC---CccccccCcccc
Q 021346 24 NGVPVRVKYCDTCMLYRPP-RCSHCSICNNCVERF---DHHCPWVGQCIG 69 (314)
Q Consensus 24 ng~~~~~k~C~tC~~~rPp-Rs~HCs~C~~CV~rf---DHHCpWvgnCIG 69 (314)
.|..+...||..|+++-+. ...||..||-|-..- -.||.=-|.|+.
T Consensus 77 Cg~~f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s 126 (143)
T 2dkt_A 77 CSTLFGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 126 (143)
T ss_dssp SCCBSCSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEE
T ss_pred CCccceeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeeec
Confidence 4677778899999998543 457888888887752 237777777754
No 7
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=33.67 E-value=21 Score=31.32 Aligned_cols=24 Identities=25% Similarity=0.617 Sum_probs=15.4
Q ss_pred ceecccCCccc--CCCCCCCccCCcc
Q 021346 30 VKYCDTCMLYR--PPRCSHCSICNNC 53 (314)
Q Consensus 30 ~k~C~tC~~~r--PpRs~HCs~C~~C 53 (314)
...|..|...= --|-|||+.|++.
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v 189 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQI 189 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCE
T ss_pred CCCCcCcCCCCCccccccccCCCcCE
Confidence 34688886322 2377888888774
No 8
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=31.68 E-value=18 Score=31.56 Aligned_cols=23 Identities=26% Similarity=0.681 Sum_probs=16.1
Q ss_pred eecccCCcc--cCCCCCCCccCCcc
Q 021346 31 KYCDTCMLY--RPPRCSHCSICNNC 53 (314)
Q Consensus 31 k~C~tC~~~--rPpRs~HCs~C~~C 53 (314)
+.|..|... --.|-|||+.||+-
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v 186 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQV 186 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCE
T ss_pred CccCCCCCccCCcccccccCCcCCE
Confidence 578888643 23488999988874
No 9
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=30.83 E-value=18 Score=26.06 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=15.9
Q ss_pred ecccCCcc--cCCCCCCCccCCcc
Q 021346 32 YCDTCMLY--RPPRCSHCSICNNC 53 (314)
Q Consensus 32 ~C~tC~~~--rPpRs~HCs~C~~C 53 (314)
.|..|... .-.|-|||+.|++-
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v 36 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGV 36 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCE
T ss_pred cccCCCCccCCccccccCCCCCEE
Confidence 58888653 23488999999874
No 10
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=29.96 E-value=23 Score=26.26 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=17.2
Q ss_pred ceecccCCccc--CCCCCCCccCCcc
Q 021346 30 VKYCDTCMLYR--PPRCSHCSICNNC 53 (314)
Q Consensus 30 ~k~C~tC~~~r--PpRs~HCs~C~~C 53 (314)
...|..|...= -.|-|||+.|++-
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v 46 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYV 46 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCE
T ss_pred CCCCcCcCCccccchhcccccCCCcE
Confidence 35688886642 3588999999874
No 11
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=29.79 E-value=22 Score=26.17 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=17.0
Q ss_pred ceecccCCccc--CCCCCCCccCCcc
Q 021346 30 VKYCDTCMLYR--PPRCSHCSICNNC 53 (314)
Q Consensus 30 ~k~C~tC~~~r--PpRs~HCs~C~~C 53 (314)
...|..|...= -.|-|||+.||+-
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v 44 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHI 44 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCE
T ss_pred CCcccCcCCcccCccccccCCCCCCE
Confidence 34688886532 3488999999874
No 12
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=25.52 E-value=30 Score=23.82 Aligned_cols=23 Identities=22% Similarity=0.496 Sum_probs=18.8
Q ss_pred ceecccCCcccCCCCCCCccCCc
Q 021346 30 VKYCDTCMLYRPPRCSHCSICNN 52 (314)
Q Consensus 30 ~k~C~tC~~~rPpRs~HCs~C~~ 52 (314)
.--|..|+..-||--.||..|=.
T Consensus 11 ~WkC~~C~k~N~Pl~ryC~rCwa 33 (53)
T 2cr8_A 11 EWQCTECKKFNSPSKRYCFRCWA 33 (53)
T ss_dssp CEECSSSCCEECSSCCBCTTTCC
T ss_pred eeecccccccCCCccchhHHHHH
Confidence 34599999999999989888754
No 13
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=25.32 E-value=33 Score=27.09 Aligned_cols=24 Identities=29% Similarity=0.827 Sum_probs=21.0
Q ss_pred ceecccCCcccCCCCCCCcc--CCcc
Q 021346 30 VKYCDTCMLYRPPRCSHCSI--CNNC 53 (314)
Q Consensus 30 ~k~C~tC~~~rPpRs~HCs~--C~~C 53 (314)
.+.|..|...-|+|+..|+. |+..
T Consensus 93 ~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 93 KSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp CEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred eEeeccccccCCchhhccchhhCCCc
Confidence 47899999999999999994 8754
No 14
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=23.57 E-value=34 Score=25.65 Aligned_cols=24 Identities=25% Similarity=0.627 Sum_probs=16.7
Q ss_pred ceecccCCccc--CCCCCCCccCCcc
Q 021346 30 VKYCDTCMLYR--PPRCSHCSICNNC 53 (314)
Q Consensus 30 ~k~C~tC~~~r--PpRs~HCs~C~~C 53 (314)
...|..|...= -.|-|||+.|+.-
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v 45 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKV 45 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCE
T ss_pred CCcCcCCCCcccchhhCccccCCCCE
Confidence 34688887532 3478999999874
No 15
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=21.62 E-value=19 Score=31.02 Aligned_cols=18 Identities=28% Similarity=0.667 Sum_probs=13.9
Q ss_pred ccCCCCCCCccCCccccC
Q 021346 39 YRPPRCSHCSICNNCVER 56 (314)
Q Consensus 39 ~rPpRs~HCs~C~~CV~r 56 (314)
+.+.+..||..|..|+.|
T Consensus 190 ~~~~~~~~CG~C~~C~~r 207 (232)
T 2pg3_A 190 YNGIKGDGCGQCAACHLR 207 (232)
T ss_dssp TTSCCTTTTSCSHHHHHH
T ss_pred cCCCCCCcCCcCHhHHHH
Confidence 345556899999999876
No 16
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=21.30 E-value=47 Score=23.48 Aligned_cols=23 Identities=35% Similarity=0.797 Sum_probs=17.9
Q ss_pred ccceecccCCcccCCCCCCCccCCc
Q 021346 28 VRVKYCDTCMLYRPPRCSHCSICNN 52 (314)
Q Consensus 28 ~~~k~C~tC~~~rPpRs~HCs~C~~ 52 (314)
.+++.|..|..|-- .+.|..||.
T Consensus 4 s~mr~C~~CgvYTL--k~~CP~CG~ 26 (60)
T 2apo_B 4 MRMKKCPKCGLYTL--KEICPKCGE 26 (60)
T ss_dssp CCCEECTTTCCEES--SSBCSSSCS
T ss_pred hhceeCCCCCCEec--cccCcCCCC
Confidence 35788999998877 677888775
No 17
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=21.23 E-value=41 Score=22.54 Aligned_cols=23 Identities=35% Similarity=0.704 Sum_probs=18.9
Q ss_pred ceecccCCcccCCCCCCCccCCc
Q 021346 30 VKYCDTCMLYRPPRCSHCSICNN 52 (314)
Q Consensus 30 ~k~C~tC~~~rPpRs~HCs~C~~ 52 (314)
.--|..|+..-||--.||..|-.
T Consensus 13 ~WkC~~C~~~N~Pl~r~C~rCw~ 35 (46)
T 2c6a_A 13 YWKCTSCNEMNPPLPSHCNRCWA 35 (46)
T ss_dssp CEECTTTCCEECSSCSSCTTTCC
T ss_pred eEecccccccCCCccchhhHHHh
Confidence 34699999999999989887743
No 18
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=20.43 E-value=30 Score=32.45 Aligned_cols=27 Identities=15% Similarity=0.368 Sum_probs=19.3
Q ss_pred cceecccCCccc---CCCCCCCccCCcccc
Q 021346 29 RVKYCDTCMLYR---PPRCSHCSICNNCVE 55 (314)
Q Consensus 29 ~~k~C~tC~~~r---PpRs~HCs~C~~CV~ 55 (314)
+..+|..|...- -.|-+||+.|+..|-
T Consensus 356 ~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h 385 (406)
T 2vrw_B 356 ETTSCKACQMLLRGTFYQGYRCYRCRAPAH 385 (406)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCEEC
T ss_pred CCCCCccccchhceeCCCCCCCCCCcCccc
Confidence 457899997643 358899998876443
No 19
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=20.34 E-value=49 Score=20.46 Aligned_cols=21 Identities=33% Similarity=0.899 Sum_probs=17.9
Q ss_pred eecccCCcccCCCCCCCccCC
Q 021346 31 KYCDTCMLYRPPRCSHCSICN 51 (314)
Q Consensus 31 k~C~tC~~~rPpRs~HCs~C~ 51 (314)
.-|.+|.+.-++-+.+|..|+
T Consensus 8 W~C~~C~~~N~~~~~kC~aC~ 28 (33)
T 3gj3_B 8 WDCDTCLVQNKPEAVKCVACE 28 (33)
T ss_dssp EECTTTCCEECTTCSBCTTTC
T ss_pred eeCCcccCCCccccCEEcccC
Confidence 359999999999999998886
Done!