BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021348
         (313 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3LYH|A Chain A, Crystal Structure Of Putative Cobalamin (Vitamin B12)
           Biosynthesis Cbix Protein (Yp_958415.1) From
           Marinobacter Aquaeolei Vt8 At 1.60 A Resolution
 pdb|3LYH|B Chain B, Crystal Structure Of Putative Cobalamin (Vitamin B12)
           Biosynthesis Cbix Protein (Yp_958415.1) From
           Marinobacter Aquaeolei Vt8 At 1.60 A Resolution
          Length = 126

 Score = 30.4 bits (67), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 197 FGNPLLPAILGMVAGHLYYFLTVLHPL--AGGKYIFKT-PLFVHKLVAFWGEGTQVNSPV 253
              P L  I+    G      TV+ PL  A G+++ K  P  + +L A  G   ++  P+
Sbjct: 45  LAEPSLDTIVNRAKGQGVEQFTVV-PLFLAAGRHLRKDVPAXIERLEAEHGVTIRLAEPI 103

Query: 254 PRNPQAGVAFR 264
            +NP+ G+A R
Sbjct: 104 GKNPRLGLAIR 114


>pdb|3B1F|A Chain A, Crystal Structure Of Prephenate Dehydrogenase From
           Streptococcus Mutans
          Length = 290

 Score = 29.6 bits (65), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 3/37 (8%)

Query: 113 VSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRT 149
           ++LERG  D+ TAD+    +F AL+ +++ A+P  +T
Sbjct: 46  IALERGIVDEATADF---KVFAALADVIILAVPIKKT 79


>pdb|2R9Q|A Chain A, Crystal Structure Of 2'-Deoxycytidine 5'-Triphosphate
           Deaminase From Agrobacterium Tumefaciens
 pdb|2R9Q|B Chain B, Crystal Structure Of 2'-Deoxycytidine 5'-Triphosphate
           Deaminase From Agrobacterium Tumefaciens
 pdb|2R9Q|C Chain C, Crystal Structure Of 2'-Deoxycytidine 5'-Triphosphate
           Deaminase From Agrobacterium Tumefaciens
 pdb|2R9Q|D Chain D, Crystal Structure Of 2'-Deoxycytidine 5'-Triphosphate
           Deaminase From Agrobacterium Tumefaciens
          Length = 370

 Score = 28.9 bits (63), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 11/20 (55%), Positives = 13/20 (65%)

Query: 284 ETNTTIPSEQPNATAGGVAF 303
           ET T + SE PN T GG+A 
Sbjct: 185 ETETLVASENPNVTGGGIAL 204


>pdb|3FT1|A Chain A, Crystal Structure Of Pollen Allergen Phl P 3
 pdb|3FT1|B Chain B, Crystal Structure Of Pollen Allergen Phl P 3
 pdb|3FT1|C Chain C, Crystal Structure Of Pollen Allergen Phl P 3
 pdb|3FT1|D Chain D, Crystal Structure Of Pollen Allergen Phl P 3
 pdb|3FT9|A Chain A, X-Ray Crystal Structure Of Pollen Allergen - Phl P 3
          Length = 100

 Score = 28.5 bits (62), Expect = 5.2,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 74  KYEDVIKRFQVWRVVTNFFFLGPFSFRF 101
           ++E + K+  VW V ++   +GPF+FRF
Sbjct: 42  EWEPLTKKGNVWEVKSSKPLVGPFNFRF 69


>pdb|2JNZ|A Chain A, Solution Structure Of Phl P 3, A Major Allergen From
           Timothy Grass Pollen
          Length = 108

 Score = 28.1 bits (61), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 74  KYEDVIKRFQVWRVVTNFFFLGPFSFRF 101
           ++E + K+  VW V ++   +GPF+FRF
Sbjct: 53  EWEPLTKKGNVWEVKSSKPLVGPFNFRF 80


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.140    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,547,355
Number of Sequences: 62578
Number of extensions: 391931
Number of successful extensions: 1146
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1143
Number of HSP's gapped (non-prelim): 6
length of query: 313
length of database: 14,973,337
effective HSP length: 99
effective length of query: 214
effective length of database: 8,778,115
effective search space: 1878516610
effective search space used: 1878516610
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)