Query 021348
Match_columns 313
No_of_seqs 211 out of 663
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 09:31:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021348.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021348hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0858 Predicted membrane pro 100.0 8.4E-64 1.8E-68 450.6 17.9 208 33-242 2-210 (239)
2 PF04511 DER1: Der1-like famil 100.0 4.8E-53 1.1E-57 378.4 18.3 192 43-234 1-197 (197)
3 COG5291 Predicted membrane pro 100.0 1.1E-48 2.4E-53 351.9 10.5 264 43-313 19-306 (313)
4 KOG2632 Rhomboid family protei 99.6 2.3E-15 5E-20 138.3 8.7 180 33-217 4-195 (258)
5 PRK10907 intramembrane serine 99.1 1.6E-10 3.5E-15 108.8 8.9 170 39-220 89-270 (276)
6 COG0705 Membrane associated se 98.9 8.1E-09 1.8E-13 93.9 9.3 172 43-218 16-209 (228)
7 PTZ00101 rhomboid-1 protease; 98.8 5.6E-09 1.2E-13 98.4 6.5 96 42-142 51-156 (278)
8 KOG4463 Uncharacterized conser 98.8 1.1E-08 2.3E-13 94.4 5.8 185 45-242 12-220 (323)
9 PF01694 Rhomboid: Rhomboid fa 98.7 2.6E-09 5.5E-14 89.7 0.5 136 80-220 2-142 (145)
10 KOG2289 Rhomboid family protei 97.4 5.5E-05 1.2E-09 72.5 1.8 140 73-226 108-260 (316)
11 KOG2890 Predicted membrane pro 97.4 0.00025 5.4E-09 67.1 6.0 177 40-223 21-222 (326)
12 PF08551 DUF1751: Eukaryotic i 95.0 0.015 3.2E-07 46.7 2.0 51 83-137 7-57 (99)
13 smart00553 SEP Domain present 66.6 2.8 6E-05 33.4 0.9 13 300-312 73-85 (93)
14 KOG2290 Rhomboid family protei 65.8 2.1 4.6E-05 43.3 0.2 36 83-119 450-485 (652)
15 COG5291 Predicted membrane pro 58.7 4.1 8.8E-05 38.2 0.7 14 300-313 253-266 (313)
16 KOG3344 40s ribosomal protein 38.6 52 0.0011 28.2 4.2 12 300-311 138-149 (150)
17 PF11169 DUF2956: Protein of u 33.5 27 0.00059 28.3 1.6 18 179-196 78-95 (103)
18 KOG2980 Integral membrane prot 32.5 2.3E+02 0.0051 27.4 8.0 144 37-185 108-258 (310)
19 KOG2086 Protein tyrosine phosp 29.8 24 0.00051 35.0 0.9 12 301-312 256-267 (380)
20 PF08325 WLM: WLM domain; Int 29.5 37 0.00079 30.3 2.0 11 263-273 125-135 (186)
21 PF11821 DUF3341: Protein of u 27.1 94 0.002 27.5 4.1 38 203-240 59-99 (173)
22 PRK15065 PTS system mannose-sp 24.8 1E+02 0.0022 29.1 4.2 41 181-221 202-245 (262)
No 1
>KOG0858 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=8.4e-64 Score=450.62 Aligned_cols=208 Identities=39% Similarity=0.854 Sum_probs=200.7
Q ss_pred cCcHHHHhcccchHHHHHHHHHHHHHHHHHcCccCccceeeehHHHHhcceeeeEeeeccccCCccHHHHHHHHHHHHHh
Q 021348 33 MSTPAEYYNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFFFLGPFSFRFAFRLIIIAKYG 112 (313)
Q Consensus 33 ~~~~~~~~~~iPpVTR~~~~~~v~~sll~~~g~i~p~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~~~~lf~ly~ly~ys 112 (313)
++++.+|+.+||||||+|+++|+++++++++++++|.+++++|++|+||+|+||++|+++++|++++++++|||++|+||
T Consensus 2 ~~~l~~~~~~iPpVTR~~~~~~v~tt~~~~l~lIsP~~l~~~p~Lv~kk~QiWRliTs~lyfg~~gf~fl~n~~FlyrY~ 81 (239)
T KOG0858|consen 2 NMDLLNFYLQIPPVTRYYTTACVVTTLLVRLDLISPFQLYLNPELVFKKFQIWRLITSFLYFGPFGFDFLMNLYFLYRYS 81 (239)
T ss_pred chhHHHHHhcCChHHHHHHHHHHHHHHHHhhcccCchheEecHHHHHhHhHHHHhhhhhheeccccHHHHHHHHHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCCCchhHHHHHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhhhccCCCceEEEEEeeeeccchHHHHHHH
Q 021348 113 VSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFMGPSLVFMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLA 192 (313)
Q Consensus 113 ~~LE~~~F~~~~adyl~~llf~~~~i~lla~~~~~~~~fl~~~l~~al~YvWsr~np~~~v~~~gli~ika~yLP~vll~ 192 (313)
++||+++|+++++||+||++++++++.+.+.+ .+..+|+++++++++|+|||+||+++|+|||++++||+||||++++
T Consensus 82 ~~LE~g~f~~rtadf~~mllf~~~l~~~~~~~--~~~~fLg~~l~~~l~YvWs~~Np~~~v~F~g~~~f~a~YlPwvll~ 159 (239)
T KOG0858|consen 82 SMLEEGSFRGRTADFLYMLLFGAVLLTLTGLF--VYIVFLGQSLVFMLVYVWSKRNPDVIVSFFGLITFKAPYLPWVLLG 159 (239)
T ss_pred HHHhcCCCCCchhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhCCCceEEEEEEecCccccchHHHHH
Confidence 99999999999999999999999998877765 5678999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhhhHHhhhhHHHHhhhhhcccC-CCCccCccChHHHHHHhhh
Q 021348 193 LELIFGNPLLPAILGMVAGHLYYFLTVLHPL-AGGKYIFKTPLFVHKLVAF 242 (313)
Q Consensus 193 ~~~l~~~~~~~~l~GI~vGhlY~fL~~i~P~-~gg~~~l~tP~~l~~l~~~ 242 (313)
++++.+++.+.|++||++||+|+|+++++|. .||++++|||+|+++++++
T Consensus 160 fs~l~g~~~~~dllGi~~GHiy~fl~~~~p~~~gg~~~l~TP~~l~rl~~~ 210 (239)
T KOG0858|consen 160 FSFLFGGSILVDLLGIIVGHIYYFLDDVYPRDYGGRDLLKTPQFLKRLFAD 210 (239)
T ss_pred HHHHhCCchHHHHHhhhhheeEEEEeeeccCCcCCcCcccCHHHHHHhcCC
Confidence 9999999889999999999999999999998 7889999999999999976
No 2
>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins. For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.
Probab=100.00 E-value=4.8e-53 Score=378.36 Aligned_cols=192 Identities=42% Similarity=0.922 Sum_probs=182.5
Q ss_pred cchHHHHHHHHHHHHHHHHHcCccCccceeeehHHHHhcceeeeEeeeccccCCccHHHHHHHHHHHHHhHhhccCCCCC
Q 021348 43 LPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFFFLGPFSFRFAFRLIIIAKYGVSLERGPFDK 122 (313)
Q Consensus 43 iPpVTR~~~~~~v~~sll~~~g~i~p~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~~~~lf~ly~ly~ys~~LE~~~F~~ 122 (313)
||||||+++++++++++++.+++++|.+++++|++|++|+|+||++|++|++|+.++++++++|++|+||++||+++|++
T Consensus 1 iPpVTR~~~~~~~~~s~l~~~~~~~~~~l~~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~~ 80 (197)
T PF04511_consen 1 IPPVTRYWLISTVALSLLVSFGIISPYYLYFDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQG 80 (197)
T ss_pred CChhHHHHHHHHHHHHHHHHCCCCCHHHeeECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHhhcC---CCCCCchHHHHHHHHHhhhccCCCceEEEEEeeeeccchHHHHHHHHHHHhcC
Q 021348 123 RTADYLWMLMFGALSLLVMAAIPP---LRTPFMGPSLVFMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGN 199 (313)
Q Consensus 123 ~~adyl~~llf~~~~i~lla~~~~---~~~~fl~~~l~~al~YvWsr~np~~~v~~~gli~ika~yLP~vll~~~~l~~~ 199 (313)
+++||+||++++++++++++.+.. .+.+++++++..+++|+|||+||+.+|+++|++++|++|+||+++++++++++
T Consensus 81 ~~ady~~~ll~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~Y~wsr~np~~~v~~~g~~~i~a~ylP~~~~~~~~l~~~ 160 (197)
T PF04511_consen 81 RSADYLWFLLFGASLILILSLLIGPYFFNIPFLGSSLSFALTYIWSRKNPNAQVSFFGLFTIKAKYLPWVLLAFSLLFGG 160 (197)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhCcccceeeEEEEEEChhhHHHHHHHHHHHhCC
Confidence 999999999999998888876522 24568999999999999999999999999999999999999999999999988
Q ss_pred -ChhhhHHhhhhHHHHhhhhhcccC-CCCccCccChH
Q 021348 200 -PLLPAILGMVAGHLYYFLTVLHPL-AGGKYIFKTPL 234 (313)
Q Consensus 200 -~~~~~l~GI~vGhlY~fL~~i~P~-~gg~~~l~tP~ 234 (313)
+.+.|++||++||+|+|+++++|+ .||++++|||+
T Consensus 161 ~~~~~~l~Gi~~Ghly~fl~~~~p~~~~G~~~l~tP~ 197 (197)
T PF04511_consen 161 SSPIPDLLGILVGHLYYFLKDIYPRLPGGKDLLKTPQ 197 (197)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhcccccCCCccCCCcC
Confidence 789999999999999999999998 67999999996
No 3
>COG5291 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.1e-48 Score=351.92 Aligned_cols=264 Identities=21% Similarity=0.383 Sum_probs=216.7
Q ss_pred cchHHHHHHHHHHHHHHHHHcCccCccceeeehHHHHhcceeeeEeeeccccCCccHHHHHHHHHHHHHhHhhccCCCCC
Q 021348 43 LPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFFFLGPFSFRFAFRLIIIAKYGVSLERGPFDK 122 (313)
Q Consensus 43 iPpVTR~~~~~~v~~sll~~~g~i~p~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~~~~lf~ly~ly~ys~~LE~~~F~~ 122 (313)
||||||++++++.+++++++.++++|+++++.|++++|+.|+||++|+++++++..+++++++|++|+||++||+++|..
T Consensus 19 IPPITRy~~ll~~a~til~~~~lvsPwy~ly~~pL~~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~LE~g~f~~ 98 (313)
T COG5291 19 IPPITRYMTLLISAVTILVYVDLVSPWYSLYYSPLFLKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRMLEEGCFNT 98 (313)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhcCccceeeechhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHhccccCc
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999999976
Q ss_pred CchhHHHHHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhhhccCCCceEEEEEeeeeccchHHHHHHHHHHHhc-CCh
Q 021348 123 RTADYLWMLMFGALSLLVMAAIPPLRTPFMGPSLVFMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFG-NPL 201 (313)
Q Consensus 123 ~~adyl~~llf~~~~i~lla~~~~~~~~fl~~~l~~al~YvWsr~np~~~v~~~gli~ika~yLP~vll~~~~l~~-~~~ 201 (313)
+-.||+|||+++..+|..++.+. .....|+++++.||.|+|+++||+++++|||+|++++||||+++++++++.+ +..
T Consensus 99 ~lv~Y~~yl~~~~l~i~a~s~I~-gg~saL~tsf~a~ItY~WS~~N~~~~Iqf~g~i~v~gkYlP~Illgfsfl~~~g~~ 177 (313)
T COG5291 99 SLVEYFWYLLVISLVIFAISNIY-GGISALGTSFSATITYIWSKRNPRAIIQFFGFISVPGKYLPFILLGFSFLSRRGIS 177 (313)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh-cchhhhcchhhhheeeeeeecCCceEEEEEEeeecchhhhhHHHHHHHHHhcCCcc
Confidence 66799999999988888877763 2355689999999999999999999999999999999999999999999998 556
Q ss_pred hhhHHhhhhHHHHhhhhhcccCCCCccC-----------ccChHHHHHHhhhhCCCCCCC---------CCCCCCCCCCc
Q 021348 202 LPAILGMVAGHLYYFLTVLHPLAGGKYI-----------FKTPLFVHKLVAFWGEGTQVN---------SPVPRNPQAGV 261 (313)
Q Consensus 202 ~~~l~GI~vGhlY~fL~~i~P~~gg~~~-----------l~tP~~l~~l~~~~~~~~~~~---------~~~~~~~~~~~ 261 (313)
+.+++|+.+||+..++.++||.+| ++. .++|.|+.++-....+....+ .|. .+...+
T Consensus 178 i~~vlGf~~g~~~h~~g~I~~mi~-r~~~~t~~~~~~~~~~~p~~f~s~~~~It~~H~~n~~~~N~~~~~~~-SQ~~~~- 254 (313)
T COG5291 178 IDDVLGFVVGHLFHYFGDIYPMIG-RDILSTPCWVKKLFNEHPSSFCSARKGITIRHERNMGYSNASTTTEE-SQCCAE- 254 (313)
T ss_pred ceeeeeeeeccccccccchhhhhh-cccCCCcccccccccCCchhhhhhcccceeeccccCcccccccccch-hhhhhh-
Confidence 999999999999999999999864 333 455555555543222111111 111 233334
Q ss_pred ccCCCCccCCCCCCCCCCCCCCCCCCCCCc---CCCCCCCCCcccCCcccccCCC
Q 021348 262 AFRGRSYSLSGTRSTAPSAEQPETNTTIPS---EQPNATAGGVAFRGRSYRLDGR 313 (313)
Q Consensus 262 ~~~g~g~rLg~~~~~~~~~~~~~~~~s~~~---~~~~~~~~~~~F~G~g~Rlg~~ 313 (313)
.|.|+|++||.++ +..+|..|++|+.+ |..+...+.++|+|+|+|.|+.
T Consensus 255 TF~g~g~~lgt~~---~~~s~~~gs~t~~~~~~~~~t~~~~~~~~~~~~~~~~qs 306 (313)
T COG5291 255 TFKGSGVVLGTKS---MAVSTVVGSSTEAKNNYLDFTEALCDKEVVAEQNPESQS 306 (313)
T ss_pred cccccceeecccc---eeEEeeecccccccccccccccccchhhhhhccCccccC
Confidence 6899999999753 45566677776633 3333444458999999999863
No 4
>KOG2632 consensus Rhomboid family proteins [Function unknown]
Probab=99.60 E-value=2.3e-15 Score=138.34 Aligned_cols=180 Identities=15% Similarity=0.250 Sum_probs=138.6
Q ss_pred cCcHHHHhcccchHHHHHHHHHHHHHHHHHcCccCccceeeehHHHHhcceeeeEeeeccccCCccHHHHHHHHHHHHHh
Q 021348 33 MSTPAEYYNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFFFLGPFSFRFAFRLIIIAKYG 112 (313)
Q Consensus 33 ~~~~~~~~~~iPpVTR~~~~~~v~~sll~~~g~i~p~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~~~~lf~ly~ly~ys 112 (313)
+....+++-.+|+.|-..+..|.++.+...+..+. ...+.++.++++.|+||++|+.++|.+ -+|++|||..++..+
T Consensus 4 ~g~~~~~~~~~p~~ts~~~~~~~~i~lv~~~~~i~--~~~~l~~~~l~~~ql~RL~Ty~l~H~s-~~hllfnmlaL~~~g 80 (258)
T KOG2632|consen 4 GGRVGQFWMKIPLLTSIVVVLAILIYLVSFFPGIV--EVLGLPSELLINWQLYRLITYALVHLS-LPHLLFNMLALWPLG 80 (258)
T ss_pred cccCccccccchHHHHHHHHHHHHHHHHhccchhh--hHhcCCHHHhhhHHHHHHHHHHHHhcc-HHHHHHHHHHHHhch
Confidence 34567888999999999999999888887765444 566777788888999999999999988 899999999999999
Q ss_pred HhhccCCCCCCchhHHHHHHHH----HHHHHHHHh-hcCCCCC-----CchHHHHHHHHHhhhccCCCceEEEEEeeeec
Q 021348 113 VSLERGPFDKRTADYLWMLMFG----ALSLLVMAA-IPPLRTP-----FMGPSLVFMMVYIWGREFPNARISIYGVVSLK 182 (313)
Q Consensus 113 ~~LE~~~F~~~~adyl~~llf~----~~~i~lla~-~~~~~~~-----fl~~~l~~al~YvWsr~np~~~v~~~gli~ik 182 (313)
.++|+.+ |.++-++.+..+. +++.+++.. +...+.. .--+...+++.-+-+-+.|....++||.+.||
T Consensus 81 ~~fE~~~--G~t~~~l~~~~llalf~gIl~ll~~~~~~~~d~~~~~~a~G~s~v~Fam~~~~~~~sp~r~~~~fg~~siP 158 (258)
T KOG2632|consen 81 SQFERTH--GTTVRILMFTVLLALFSGILYLLAYHVFLLSDLVYVEGAIGFSGVLFAMMAVLEVQSPVRSRSVFGLFSIP 158 (258)
T ss_pred hHHHhhc--cceehHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccccHHHHHHHHHHhhcCcccchhhccccccc
Confidence 9999987 3366666554433 223333332 2111111 11246666666666888899999999999999
Q ss_pred cchHHHHHHHHH-HHhcC-ChhhhHHhhhhHHHHhhh
Q 021348 183 GFYLPWAMLALE-LIFGN-PLLPAILGMVAGHLYYFL 217 (313)
Q Consensus 183 a~yLP~vll~~~-~l~~~-~~~~~l~GI~vGhlY~fL 217 (313)
++|.||+++++. +++.+ +++.|++|+++|+.|-+.
T Consensus 159 ~~l~Pw~lLi~~~~lvp~aSFlghl~GllvG~ay~~~ 195 (258)
T KOG2632|consen 159 IVLAPWALLIATQILVPQASFLGHLCGLLVGYAYAFS 195 (258)
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHH
Confidence 999999998775 66665 789999999999999884
No 5
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=99.13 E-value=1.6e-10 Score=108.77 Aligned_cols=170 Identities=18% Similarity=0.255 Sum_probs=106.0
Q ss_pred HhcccchHHHHHHHHHHHHHHHHHcCccCc--cceeeehHHHHhcceeeeEeeeccccCCccHHHHHHHHHHHHHhHhhc
Q 021348 39 YYNSLPPVSKTYGVACLMATAAFYLQLYNP--KNIALKYEDVIKRFQVWRVVTNFFFLGPFSFRFAFRLIIIAKYGVSLE 116 (313)
Q Consensus 39 ~~~~iPpVTR~~~~~~v~~sll~~~g~i~p--~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~~~~lf~ly~ly~ys~~LE 116 (313)
.-.+-.|+|-.+++.|+++.++..++.... ..+.+.. ......|+||++|+.|.|.+ .+|++|||+.+|..+..+|
T Consensus 89 ~~~~~~p~T~~li~i~i~vf~l~~~~~~~~~~~~l~~~~-~~~~~~q~WRl~T~~flH~~-~~Hl~fNml~l~~lG~~iE 166 (276)
T PRK10907 89 LRERAGPLTLGVMIACVVVFILMQILGDQTVMLWLAWPF-DPSLKFELWRYFTHALLHFS-LLHILFNLLWWWYLGGAVE 166 (276)
T ss_pred hccCCCCHHHHHHHHHHHHHHHHHHhccHHHHHHHhccc-cccccCCcHHHHhHHHHhCC-HHHHHHHHHHHHHHHHHHH
Confidence 334467899999999999998876543221 1222222 23346799999999999998 8999999999999999999
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHhhcCCCCCCch-H-HHHHHHHHhhhc--cCCCceEEEEEeeeeccchHHHHHH-
Q 021348 117 RGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFMG-P-SLVFMMVYIWGR--EFPNARISIYGVVSLKGFYLPWAML- 191 (313)
Q Consensus 117 ~~~F~~~~adyl~~llf~~~~i~lla~~~~~~~~fl~-~-~l~~al~YvWsr--~np~~~v~~~gli~ika~yLP~vll- 191 (313)
+.. ++..|+...++++++..++..+. .+..+.| + ++...+.|+|-+ +.|+..+ .++..++.++.+
T Consensus 167 ~~~---G~~~~l~l~l~s~i~~~~~~~~~-~~~~~gGaSGvVygL~g~~~~~~~~~p~~~~------~lp~~~~~f~llw 236 (276)
T PRK10907 167 KRL---GSGKLIVITLISALLSGWVQSKF-SGPWFGGLSGVVYALMGYVWLRGERDPQSGI------YLPRGLIAFALLW 236 (276)
T ss_pred HHH---ChHHHHHHHHHHHHHHHHHHHHH-ccchhhHHHHHHHHHHHHHHHHhccccccch------hhhHHHHHHHHHH
Confidence 876 46667665555554433333321 2334433 3 444444577744 4554333 223333333322
Q ss_pred ---HHHHHhcCCh--hhhHHhhhhHHHHhhhhhc
Q 021348 192 ---ALELIFGNPL--LPAILGMVAGHLYYFLTVL 220 (313)
Q Consensus 192 ---~~~~l~~~~~--~~~l~GI~vGhlY~fL~~i 220 (313)
++.-+++.++ ..|+.|.++|.+.-+++..
T Consensus 237 l~~g~~~~~g~~Ian~AHlgGli~Gll~g~~~~~ 270 (276)
T PRK10907 237 LVAGYFDLFGMSIANAAHVAGLAVGLAMAFWDTR 270 (276)
T ss_pred HHHHHHHccCcccHHHHHHHHHHHHHHHHHHhhh
Confidence 1222223333 8899999999998877643
No 6
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]
Probab=98.88 E-value=8.1e-09 Score=93.92 Aligned_cols=172 Identities=19% Similarity=0.268 Sum_probs=121.6
Q ss_pred cchHHHHHHHHHHHHHHHHHcCccCccc--------eeeehHHHHhcc---eeeeEeeeccccCCccHHHHHHHHHHHHH
Q 021348 43 LPPVSKTYGVACLMATAAFYLQLYNPKN--------IALKYEDVIKRF---QVWRVVTNFFFLGPFSFRFAFRLIIIAKY 111 (313)
Q Consensus 43 iPpVTR~~~~~~v~~sll~~~g~i~p~~--------L~l~~~~v~~~~---QiWRLiTs~f~~g~~~~~~lf~ly~ly~y 111 (313)
.|++|+.++..++++.+........... ....+..+.... |+||++|+.|.|++ -.|+++||+.+|.+
T Consensus 16 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~lit~~FlH~~-~~Hll~N~~~l~~f 94 (228)
T COG0705 16 APPVTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAIFLHAG-FLHLLFNMLALWVF 94 (228)
T ss_pred cchHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhHHhhcchhhhccccccchHHHHHHHHHHhh-HHHHHHHHHHHHHh
Confidence 5999999999999998877643222111 112222222222 89999999999998 89999999999999
Q ss_pred hHhhccCCCCCCchhHHHHHHHHHHHHHHHHhhcC-CC-CCCc-hHHHHHHHHHhhhccCCCceEEEEEe-eeeccchHH
Q 021348 112 GVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPP-LR-TPFM-GPSLVFMMVYIWGREFPNARISIYGV-VSLKGFYLP 187 (313)
Q Consensus 112 s~~LE~~~F~~~~adyl~~llf~~~~i~lla~~~~-~~-~~fl-~~~l~~al~YvWsr~np~~~v~~~gl-i~ika~yLP 187 (313)
+..+|+.. ++..|+.+.+.+++...+....+. .+ .+.+ .+.-++.++=.++...|..++..... ++.++..+-
T Consensus 95 g~~le~~~---G~~~f~~~yl~~gl~~~~~~~~~~~~~~~~~~GASG~i~gllga~~~~~~~~~~~~~~~~~~~~~~~~i 171 (228)
T COG0705 95 GSNLERRL---GTLRFLLFYLLSGLLAGLAQVLFGPKGGAPSLGASGAIFGLLGAYFLLFPFARILLLFLSLPRPALILI 171 (228)
T ss_pred hHHHHHHh---chhHHHHHHHHHHHHHHHHHHHHcccccCcccchhHHHHHHHHHHHHHccccchhhhhccCchhHHHHH
Confidence 99999976 455577666655554444433311 11 2344 37888888888889999988877655 666776666
Q ss_pred HHHHHHHHHhcC-C------hhhhHHhhhhHHHHhhhh
Q 021348 188 WAMLALELIFGN-P------LLPAILGMVAGHLYYFLT 218 (313)
Q Consensus 188 ~vll~~~~l~~~-~------~~~~l~GI~vGhlY~fL~ 218 (313)
.+.++.+++.+. + ...|+.|++.|-+|..+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~ 209 (228)
T COG0705 172 LIWLLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALL 209 (228)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777642 1 588999999999997653
No 7
>PTZ00101 rhomboid-1 protease; Provisional
Probab=98.83 E-value=5.6e-09 Score=98.45 Aligned_cols=96 Identities=10% Similarity=0.193 Sum_probs=69.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHc-C---ccCcc--c---e-eeehHHHHhcceeeeEeeeccccCCccHHHHHHHHHHHHH
Q 021348 42 SLPPVSKTYGVACLMATAAFYL-Q---LYNPK--N---I-ALKYEDVIKRFQVWRVVTNFFFLGPFSFRFAFRLIIIAKY 111 (313)
Q Consensus 42 ~iPpVTR~~~~~~v~~sll~~~-g---~i~p~--~---L-~l~~~~v~~~~QiWRLiTs~f~~g~~~~~~lf~ly~ly~y 111 (313)
+||.+|.++++..+++.++... + ...|. . + .++++.+ +++|+||++|+.|.|++ .+|+++||+++|..
T Consensus 51 ~i~~l~~~Iiii~iivfil~l~~~~~~~l~p~~~~L~~~Ga~~~~~i-~~gq~WRLiT~~FlH~~-~~HLl~Nm~~l~~~ 128 (278)
T PTZ00101 51 TWKSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRI-KQGEIHRLILPIFLHAN-IFHTFFNVFFQLRM 128 (278)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHhCcchhhh-hcCCCHHHHHHHHHccC-HHHHHHHHHHHHHH
Confidence 6799999999999988776543 2 12232 1 1 2345555 56899999999999988 89999999999999
Q ss_pred hHhhccCCCCCCchhHHHHHHHHHHHHHHHH
Q 021348 112 GVSLERGPFDKRTADYLWMLMFGALSLLVMA 142 (313)
Q Consensus 112 s~~LE~~~F~~~~adyl~~llf~~~~i~lla 142 (313)
+..+|+.. ++..|+...++++++-.+++
T Consensus 129 G~~lE~~~---G~~r~~ilYl~sGi~G~l~s 156 (278)
T PTZ00101 129 GFTLEKNY---GIVKIIILYFLTGIYGNILS 156 (278)
T ss_pred HHHHHHHH---ChHHHHHHHHHHHHHHHHHH
Confidence 99999986 46667733344444444444
No 8
>KOG4463 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=1.1e-08 Score=94.38 Aligned_cols=185 Identities=21% Similarity=0.360 Sum_probs=115.2
Q ss_pred hHHHHHHHHHHHHHHHHHcCccCccceeeehHHHHhc-ceeeeEeeeccccCCccHHHHHHHHHHHHHhHhhccCCCCCC
Q 021348 45 PVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKR-FQVWRVVTNFFFLGPFSFRFAFRLIIIAKYGVSLERGPFDKR 123 (313)
Q Consensus 45 pVTR~~~~~~v~~sll~~~g~i~p~~L~l~~~~v~~~-~QiWRLiTs~f~~g~~~~~~lf~ly~ly~ys~~LE~~~F~~~ 123 (313)
||||.+++.+.+.++.....-..+ .+.+++++++.+ +|+||++-+-|++.. .-..++.+|.+| +.+.+|+.. +
T Consensus 12 pVTK~~~iT~~~~~vvagI~~~k~-~f~l~y~~~l~~y~qywrlL~~qF~~~n-~~e~~~~l~I~Y-~fR~~ERlL---G 85 (323)
T KOG4463|consen 12 PVTKAFVITSALFTVVAGIQGRKS-KFGLSYQDILEKYFQYWRLLMSQFAFSN-TPELMFGLYILY-YFRVFERLL---G 85 (323)
T ss_pred chHHHHHHHHHHHHHHHHhhhccc-ccccchhHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHH-HHHHHHHHh---c
Confidence 599999999988888776533443 355777777765 899999999999877 789999999999 669999976 4
Q ss_pred chhHHHHHHHHHHHHH----HHHhhc---CCCCCCch-HHHHHHHHHhhhccCCCc-eEEEEEeeeeccchHHHHH-HHH
Q 021348 124 TADYLWMLMFGALSLL----VMAAIP---PLRTPFMG-PSLVFMMVYIWGREFPNA-RISIYGVVSLKGFYLPWAM-LAL 193 (313)
Q Consensus 124 ~adyl~~llf~~~~i~----lla~~~---~~~~~fl~-~~l~~al~YvWsr~np~~-~v~~~gli~ika~yLP~vl-l~~ 193 (313)
+..|+-++++.++.-+ ++..+. ..+.-.+. .+|+++..|-.--.-|-. -+..|+ +++..|..-++. .+.
T Consensus 86 Shky~~fiv~s~~~~~l~~~il~~l~~~~~~nl~~~qp~~liFa~~~~~y~~ip~~~f~r~f~-~~f~dkni~~i~~~G~ 164 (323)
T KOG4463|consen 86 SHKYSVFIVFSGTVSLLLEVILLSLLKDTTANLLTSQPYGLIFASFIPFYLDIPVSTFFRVFG-VNFSDKNISFIYLAGV 164 (323)
T ss_pred cccceeehhHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCceeeeeccceEEEecceeEEEeec-ccccccceeeecccch
Confidence 5566666555544322 222210 01111111 246666665554444532 334453 455555322222 223
Q ss_pred HHHhcC-------------ChhhhHHhhhhHHHHhhhhhcccCCCCccCccChHHHHHHhhh
Q 021348 194 ELIFGN-------------PLLPAILGMVAGHLYYFLTVLHPLAGGKYIFKTPLFVHKLVAF 242 (313)
Q Consensus 194 ~~l~~~-------------~~~~~l~GI~vGhlY~fL~~i~P~~gg~~~l~tP~~l~~l~~~ 242 (313)
.+.... +...-++|++.+|+|..= .-|..--++|.++-..+++
T Consensus 165 a~sh~~NkredksaveWk~~i~f~~~gLi~~~~~~~~------~agi~~~~~~~~~~~f~d~ 220 (323)
T KOG4463|consen 165 ALSHSSNKREDKSAVEWKRSIFFGICGLIAGSLYRLN------IAGIRKAKFPEFVASFFDR 220 (323)
T ss_pred hhhcCcccccccccceeecccccccchhhhhhHhhcc------cccccccccHHHHHhhhcc
Confidence 222211 236678999999999642 2356666888888887764
No 9
>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=98.72 E-value=2.6e-09 Score=89.65 Aligned_cols=136 Identities=21% Similarity=0.303 Sum_probs=79.8
Q ss_pred hcceeeeEeeeccccCCccHHHHHHHHHHHHHhHhhccCCCCCCchhHHHHHHHHHHHHHHHHhhcCCCC-CCc-hHHHH
Q 021348 80 KRFQVWRVVTNFFFLGPFSFRFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRT-PFM-GPSLV 157 (313)
Q Consensus 80 ~~~QiWRLiTs~f~~g~~~~~~lf~ly~ly~ys~~LE~~~F~~~~adyl~~llf~~~~i~lla~~~~~~~-~fl-~~~l~ 157 (313)
++.|+||++|+.|.|.+ ..|+++|++.++.++..+|+.. ++.+++...+.+.++..++..+..... ... .++.+
T Consensus 2 ~~~~~wrl~T~~f~h~~-~~hl~~n~~~l~~~g~~lE~~~---G~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~G~Sg~~ 77 (145)
T PF01694_consen 2 QNGQWWRLFTSPFVHAN-FLHLLFNLLALWFFGSLLERRL---GSRRFLALYLLSGLLGSLLSLLFSPPNQPYVGASGAV 77 (145)
T ss_dssp GCC-TTHHHHGGG--SS-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-S-----SSHHHH
T ss_pred CCCcchhhhHHHHHccC-HHHHHHHHHHHHHhhhhHhhhc---cchHHHHHHHHHHHhhhhccccccccccccCCCcccc
Confidence 57899999999999988 8999999999999999999986 456666555544444333332211111 223 35555
Q ss_pred HHHHHhhhccCCCceEEE---EEeeeeccchHHHHHHHHHHHhcCChhhhHHhhhhHHHHhhhhhc
Q 021348 158 FMMVYIWGREFPNARISI---YGVVSLKGFYLPWAMLALELIFGNPLLPAILGMVAGHLYYFLTVL 220 (313)
Q Consensus 158 ~al~YvWsr~np~~~v~~---~gli~ika~yLP~vll~~~~l~~~~~~~~l~GI~vGhlY~fL~~i 220 (313)
.+++-......|..+... +..+.+...++++.++... ....+...|+.|+++|.+|.++-..
T Consensus 78 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~hl~G~~~G~~~~~~~~~ 142 (145)
T PF01694_consen 78 FGLLGAFLFLYPQNKKRLRFIYLALVVPIIVLVIILLLGF-IPNISFLGHLGGFLAGLLYGFLILR 142 (145)
T ss_dssp HHHHHHHHHHHHCCCCCS---HCCCCCCCCCCCHHHCTSS-SSTTTHHHHHHHHHHHHHHHHHHCH
T ss_pred hHHHHHHHHHHhhccchhhcchHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555444444332211 1223344444443333222 1223569999999999999876543
No 10
>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=97.44 E-value=5.5e-05 Score=72.55 Aligned_cols=140 Identities=16% Similarity=0.198 Sum_probs=85.1
Q ss_pred eehHHHHhcceeeeEeeeccccCCccHHHHHHHHHHHHHhHhhccCCCCCCchhHHHHHHHHHHHHHHHHhhcCCCCCC-
Q 021348 73 LKYEDVIKRFQVWRVVTNFFFLGPFSFRFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPF- 151 (313)
Q Consensus 73 l~~~~v~~~~QiWRLiTs~f~~g~~~~~~lf~ly~ly~ys~~LE~~~F~~~~adyl~~llf~~~~i~lla~~~~~~~~f- 151 (313)
..+....++.|+||++|+.+.|.+ -+|+++|++.+-..|..||+.+ |-..=.+.|++ +++.-.+++.+..-+.+.
T Consensus 108 ~~i~~~~~r~E~WRllTym~LHaG-i~HL~~N~~~ql~iGi~LE~~~--G~~RiglIYl~-gg~aGSlls~l~d~~~~sV 183 (316)
T KOG2289|consen 108 LLIYKPVHRGELWRLLTYMWLHAG-IFHLLLNMLSQLFIGIPLEQVH--GFLRIGLIYLA-GGVAGSLLSSLFDPNSISV 183 (316)
T ss_pred ceecChhhhchhHHHHHHHHHhcC-HHHHHHHHHHHHhccccHHhhc--CceEEeeehhh-hhhhhHHHHHHhccCCcee
Confidence 344456677899999999999988 8999999999999999999976 21222234444 333333333331111212
Q ss_pred --------chHHHHHHHHHhhhccCCCceEEEEEeeeeccchHHHHHHHHHHHhcC----ChhhhHHhhhhHHHHhhhhh
Q 021348 152 --------MGPSLVFMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGN----PLLPAILGMVAGHLYYFLTV 219 (313)
Q Consensus 152 --------l~~~l~~al~YvWsr~np~~~v~~~gli~ika~yLP~vll~~~~l~~~----~~~~~l~GI~vGhlY~fL~~ 219 (313)
|-.+.+.-++--|........ +.-.-.+++++++-++. ..+.|+-|.+.|-.+-|+..
T Consensus 184 GASggvfaLlgA~Ls~l~~Nw~~m~~~~~----------~l~~ll~Ii~i~l~~G~~~~~~~~~h~gg~~~G~~~~fil~ 253 (316)
T KOG2289|consen 184 GASGGVFALLGAHLSNLLTNWTIMKNKFA----------ALRTLLIIIFINLDLGFAPYVDNFAHIGGLLAGFLLGFVLH 253 (316)
T ss_pred cccHHHHHHHHHHHHHHHhhHHHhcchHH----------HHHHHHHHHHHHHhhccccceeccccccccCCCcchhHHhh
Confidence 223444555555554332211 22222233355555553 23678889999999998887
Q ss_pred cccCCCC
Q 021348 220 LHPLAGG 226 (313)
Q Consensus 220 i~P~~gg 226 (313)
+-|..+|
T Consensus 254 ~~g~~~~ 260 (316)
T KOG2289|consen 254 IGGQLGG 260 (316)
T ss_pred hccceeE
Confidence 7777543
No 11
>KOG2890 consensus Predicted membrane protein [Function unknown]
Probab=97.43 E-value=0.00025 Score=67.13 Aligned_cols=177 Identities=18% Similarity=0.213 Sum_probs=113.0
Q ss_pred hcccchHHHHHHHHHHHHHHHHHcCc-----cCccceeeehHHHHhcceeeeEeeeccccCCccHHHHHHHHHHHHHhHh
Q 021348 40 YNSLPPVSKTYGVACLMATAAFYLQL-----YNPKNIALKYEDVIKRFQVWRVVTNFFFLGPFSFRFAFRLIIIAKYGVS 114 (313)
Q Consensus 40 ~~~iPpVTR~~~~~~v~~sll~~~g~-----i~p~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~~~~lf~ly~ly~ys~~ 114 (313)
..+.-++-++++++.+...+.+..+. ..|. +.+-+..++ +.+|+++|+.|+--. -+..+.++..+--+|+.
T Consensus 21 l~n~~vvvs~ic~~tlf~yi~sf~~~t~~l~~~p~-y~lvp~~~~--~~~WtliTs~fie~~-vw~V~~sv~~L~v~G~~ 96 (326)
T KOG2890|consen 21 LLNLEVVVSAICVLTLFGYILSFGNFTILLATLPG-YQLVPNALF--FFPWTLITSGFIELN-VWDVLVSVLTLSVGGKF 96 (326)
T ss_pred hhhchhHHHHHHHHHHHHHHHHHHHhHHHHHhccc-cccCCcchh--hhhHHHHhcchhhhh-HHHHHHHHHheeeccee
Confidence 34445566666655555544443311 1221 234455555 489999999998544 79999999999999999
Q ss_pred hccCCCCCCchhHHHHH-HHHHHH---HHHHHhhcC---CCC-----CCc-hHHHHHHHHHhhhccCCCceEEEEEeeee
Q 021348 115 LERGPFDKRTADYLWML-MFGALS---LLVMAAIPP---LRT-----PFM-GPSLVFMMVYIWGREFPNARISIYGVVSL 181 (313)
Q Consensus 115 LE~~~F~~~~adyl~~l-lf~~~~---i~lla~~~~---~~~-----~fl-~~~l~~al~YvWsr~np~~~v~~~gli~i 181 (313)
||... +..+++.+. +..++. +++.+.+.| -+. ++- ..+.+..++..|-|.-||..|.--=.-++
T Consensus 97 lEp~W---g~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~~i~G~~gilaGilVa~kQllpd~~il~~~~~r~ 173 (326)
T KOG2890|consen 97 LEPNW---GSLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYIPIHGTTGILAGILVAWKQLLPDTIILELKSGRF 173 (326)
T ss_pred eccCC---CCHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEEEeccchHHHHHHHHHHHHHcCceeEEeccchhh
Confidence 99988 455565443 333221 112222211 121 221 25888889999999999998854322334
Q ss_pred ccchHHHHHHHHHHHhc-------CChhhhHHhhhhHHHHhhhhhcccC
Q 021348 182 KGFYLPWAMLALELIFG-------NPLLPAILGMVAGHLYYFLTVLHPL 223 (313)
Q Consensus 182 ka~yLP~vll~~~~l~~-------~~~~~~l~GI~vGhlY~fL~~i~P~ 223 (313)
+++-+|...++++++.. .++..-..|..++..|.++...+|.
T Consensus 174 ~~~~lP~~~l~~~~il~i~~f~~f~~l~s~~~g~~~sWtYLRfyq~h~~ 222 (326)
T KOG2890|consen 174 LYAHLPLLVLFLSLILSIITFLVFASLPSITFGVLVSWTYLRFYQRHPT 222 (326)
T ss_pred hhhhCCHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhhheecccCCc
Confidence 44449988887766653 3445666899999999999888883
No 12
>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins. Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].
Probab=94.97 E-value=0.015 Score=46.75 Aligned_cols=51 Identities=18% Similarity=0.197 Sum_probs=43.9
Q ss_pred eeeeEeeeccccCCccHHHHHHHHHHHHHhHhhccCCCCCCchhHHHHHHHHHHH
Q 021348 83 QVWRVVTNFFFLGPFSFRFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALS 137 (313)
Q Consensus 83 QiWRLiTs~f~~g~~~~~~lf~ly~ly~ys~~LE~~~F~~~~adyl~~llf~~~~ 137 (313)
..|+++|+.|+... .+.++++...+...++.||+.. ++.+++.|+++..++
T Consensus 7 ~pWtl~T~~fve~~-i~~~l~~~~~l~~~g~~lE~~W---Gs~E~lkFi~vv~~~ 57 (99)
T PF08551_consen 7 YPWTLFTAGFVETN-IIGLLFSLLTLFYGGRYLEPIW---GSREFLKFILVVNVI 57 (99)
T ss_pred ehHHHHHHHHHHhH-HHHHHHHHHHHHHhhHHHHHhc---ChHHHHHHHHHHHHH
Confidence 69999999999866 8999999999999999999988 478899887765443
No 13
>smart00553 SEP Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47.
Probab=66.58 E-value=2.8 Score=33.44 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=11.3
Q ss_pred CcccCCcccccCC
Q 021348 300 GVAFRGRSYRLDG 312 (313)
Q Consensus 300 ~~~F~G~g~Rlg~ 312 (313)
-.+|.|.|||||+
T Consensus 73 ~~~F~G~G~~LGs 85 (93)
T smart00553 73 FKPFSGSGQKLGS 85 (93)
T ss_pred ccCCccCCccCCC
Confidence 3679999999997
No 14
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=65.78 E-value=2.1 Score=43.27 Aligned_cols=36 Identities=14% Similarity=0.187 Sum_probs=32.5
Q ss_pred eeeeEeeeccccCCccHHHHHHHHHHHHHhHhhccCC
Q 021348 83 QVWRVVTNFFFLGPFSFRFAFRLIIIAKYGVSLERGP 119 (313)
Q Consensus 83 QiWRLiTs~f~~g~~~~~~lf~ly~ly~ys~~LE~~~ 119 (313)
|++||+||.|+|.+ -+|.+..+.|=+...+.||+-.
T Consensus 450 QfYRL~~SLFlHag-viH~~vSi~FQm~vmrdlEkL~ 485 (652)
T KOG2290|consen 450 QFYRLWLSLFLHAG-VIHLLVSICFQMTVMRDLEKLA 485 (652)
T ss_pred HHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999988 8999999988888999999843
No 15
>COG5291 Predicted membrane protein [Function unknown]
Probab=58.73 E-value=4.1 Score=38.17 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=11.6
Q ss_pred CcccCCcccccCCC
Q 021348 300 GVAFRGRSYRLDGR 313 (313)
Q Consensus 300 ~~~F~G~g~Rlg~~ 313 (313)
++.|+|||+|||.+
T Consensus 253 ~~TF~g~g~~lgt~ 266 (313)
T COG5291 253 AETFKGSGVVLGTK 266 (313)
T ss_pred hhcccccceeeccc
Confidence 45699999999964
No 16
>KOG3344 consensus 40s ribosomal protein s10 [Translation, ribosomal structure and biogenesis]
Probab=38.59 E-value=52 Score=28.20 Aligned_cols=12 Identities=33% Similarity=0.606 Sum_probs=9.0
Q ss_pred CcccCCcccccC
Q 021348 300 GVAFRGRSYRLD 311 (313)
Q Consensus 300 ~~~F~G~g~Rlg 311 (313)
..+|||+|.|-|
T Consensus 138 ~~~frg~g~g~~ 149 (150)
T KOG3344|consen 138 EPQFRGRGFGRP 149 (150)
T ss_pred cccccccCCCCC
Confidence 467999888754
No 17
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=33.51 E-value=27 Score=28.29 Aligned_cols=18 Identities=33% Similarity=0.781 Sum_probs=14.6
Q ss_pred eeeccchHHHHHHHHHHH
Q 021348 179 VSLKGFYLPWAMLALELI 196 (313)
Q Consensus 179 i~ika~yLP~vll~~~~l 196 (313)
..-...+|||++|+++++
T Consensus 78 ~~~~~~~LPW~LL~lSW~ 95 (103)
T PF11169_consen 78 SQSRSSWLPWGLLVLSWI 95 (103)
T ss_pred ccccccchhHHHHHHHHH
Confidence 345667999999999984
No 18
>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]
Probab=32.49 E-value=2.3e+02 Score=27.41 Aligned_cols=144 Identities=12% Similarity=0.130 Sum_probs=78.0
Q ss_pred HHHhcccchHHHHHHHHHHHHHHHHHcCccCccceeeehHHHHhcceeeeEeeeccccCCccHHHHHHHHHHHHHhH-hh
Q 021348 37 AEYYNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFFFLGPFSFRFAFRLIIIAKYGV-SL 115 (313)
Q Consensus 37 ~~~~~~iPpVTR~~~~~~v~~sll~~~g~i~p~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~~~~lf~ly~ly~ys~-~L 115 (313)
..|.+-.|-+--.++++.+++..+.+.....-....+--....++.-.|.++++.|=|-. .+|.-.+++.+..|.. ++
T Consensus 108 k~w~~~~~g~v~~ll~~n~~vf~lWrv~~~~~~~~~~mls~~~~~t~~w~i~~s~Fsh~~-a~h~g~~~~~~~~y~~~a~ 186 (310)
T KOG2980|consen 108 KHWISGANGVVFGLLIANAFVFTLWRVPQKQFTMIPWMLSRNAYKTGCWKIILSTFSHYS-ALHLGPNMLVLKSYLAGAL 186 (310)
T ss_pred HHHhhcCCcchhHHHHHHHHHHHHHHhcchhhhhhhHHhhcccccccceeEEeehhcchh-HhhhcHHHHHHHHHhcccc
Confidence 456666666333344445555555554322111111111222345678999999965544 6888888888888877 55
Q ss_pred ccCCCCCCchhHHHHHHHHHHHHH-HHHh---hcCC-CCCCch-HHHHHHHHHhhhccCCCceEEEEEeeeeccch
Q 021348 116 ERGPFDKRTADYLWMLMFGALSLL-VMAA---IPPL-RTPFMG-PSLVFMMVYIWGREFPNARISIYGVVSLKGFY 185 (313)
Q Consensus 116 E~~~F~~~~adyl~~llf~~~~i~-lla~---~~~~-~~~fl~-~~l~~al~YvWsr~np~~~v~~~gli~ika~y 185 (313)
-...+ ...-+..|+ ...... .+.. .+-. -.+-|| +.-+++++-+.|-..|+.+..+.+++++|+-.
T Consensus 187 ~~~~~--~~~~~Alyl--Sa~~~~~~i~~~~~v~~~~~gp~LGAsGav~ai~a~~~~lfP~~~~~i~f~~~v~~ga 258 (310)
T KOG2980|consen 187 KGSLG--FSSFFALYL--SAGVKGLFISVKDKVPTSWAGPSLGASGAVYAILALDCTLFPKTTLYILFVFPVPAGA 258 (310)
T ss_pred cCCcc--hhhccccee--ccccccceeEeeccccccccccccccchHHHHHHHHHhhcCcCcceeEEEeecccccc
Confidence 54431 122222333 111110 0000 0000 123343 56677777778889999999998899998843
No 19
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=29.81 E-value=24 Score=35.04 Aligned_cols=12 Identities=33% Similarity=0.565 Sum_probs=10.8
Q ss_pred cccCCcccccCC
Q 021348 301 VAFRGRSYRLDG 312 (313)
Q Consensus 301 ~~F~G~g~Rlg~ 312 (313)
.+|+|.|||||+
T Consensus 256 ~pF~G~Gq~LGs 267 (380)
T KOG2086|consen 256 KPFSGEGQRLGS 267 (380)
T ss_pred CCCCCcCeecCC
Confidence 479999999997
No 20
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=29.50 E-value=37 Score=30.34 Aligned_cols=11 Identities=27% Similarity=0.501 Sum_probs=8.0
Q ss_pred cCCCCccCCCC
Q 021348 263 FRGRSYSLSGT 273 (313)
Q Consensus 263 ~~g~g~rLg~~ 273 (313)
|.+.|++||+.
T Consensus 125 f~~~G~~l~~~ 135 (186)
T PF08325_consen 125 FWSSGRRLGGS 135 (186)
T ss_pred cCCCCcccCCC
Confidence 66777888765
No 21
>PF11821 DUF3341: Protein of unknown function (DUF3341); InterPro: IPR021776 This family of proteins are functionally uncharacterised. This family is found in bacteria. Proteins in this family are about 170 amino acids in length.
Probab=27.14 E-value=94 Score=27.51 Aligned_cols=38 Identities=32% Similarity=0.509 Sum_probs=28.1
Q ss_pred hhHHhhhhHHHHhhhh--hcccC-CCCccCccChHHHHHHh
Q 021348 203 PAILGMVAGHLYYFLT--VLHPL-AGGKYIFKTPLFVHKLV 240 (313)
Q Consensus 203 ~~l~GI~vGhlY~fL~--~i~P~-~gg~~~l~tP~~l~~l~ 240 (313)
..++|.+.|++..+.. ..||. .|||.++.-|.|+--.|
T Consensus 59 ~Gl~G~~~~~~l~~~t~~~dyP~~iGGKP~~S~Pafipi~F 99 (173)
T PF11821_consen 59 GGLTGFATAFLLQWYTNAVDYPLNIGGKPLFSWPAFIPITF 99 (173)
T ss_pred HHHHHHHHHHHHHHHHHhcccceecCCCCCCCCcccchHHH
Confidence 3457888887766554 35898 89999999898876554
No 22
>PRK15065 PTS system mannose-specific transporter subunit IIC; Provisional
Probab=24.80 E-value=1e+02 Score=29.10 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=28.4
Q ss_pred eccchHHHHHHHHHHHh--cCC-hhhhHHhhhhHHHHhhhhhcc
Q 021348 181 LKGFYLPWAMLALELIF--GNP-LLPAILGMVAGHLYYFLTVLH 221 (313)
Q Consensus 181 ika~yLP~vll~~~~l~--~~~-~~~~l~GI~vGhlY~fL~~i~ 221 (313)
.|.++.||++++|-+.. +-+ .-..++|++.+.+|++.+..+
T Consensus 202 ~~k~~~~ff~lGFvl~ayl~l~~l~iAiig~~iA~i~~~~~~~~ 245 (262)
T PRK15065 202 ATRELMPFFYLGFVLAAFTNLNLIALGVIGVVLALIYLQLSPKY 245 (262)
T ss_pred hccchHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 36668999998875443 333 366789999999987655433
Done!