Query 021348
Match_columns 313
No_of_seqs 211 out of 663
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 16:20:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021348.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021348hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xov_A Rhomboid protease GLPG; 99.5 3.3E-14 1.1E-18 124.3 7.3 167 42-218 2-178 (181)
2 2nr9_A Protein GLPG homolog; i 99.2 8.7E-12 3E-16 110.2 6.3 167 41-218 6-183 (196)
3 1ss6_A P47, NSFL1 cofactor P47 53.9 3.4 0.00012 32.3 0.6 13 300-312 82-94 (102)
4 1s3s_G P47 protein; AAA ATPase 38.8 18 0.00062 28.9 2.7 14 262-275 9-22 (127)
5 2jpk_A Bacteriocin lactococcin 13.0 1.1E+02 0.0038 18.7 1.9 17 182-198 2-18 (35)
6 1w8x_P Protein P16, protein S, 5.8 2.3E+02 0.008 21.2 1.5 22 152-173 10-31 (117)
7 1emz_A Envelope glycoprotein E 5.7 2.3E+02 0.0079 16.5 1.1 13 206-218 4-16 (26)
8 3nsw_A Excretory-secretory pro 5.5 1.7E+02 0.006 21.6 0.6 8 81-88 39-46 (106)
9 1sou_A 5,10-methenyltetrahydro 3.7 3.3E+02 0.011 22.7 1.2 11 301-311 120-130 (194)
10 2kon_A Uncharacterized protein 3.4 4.7E+02 0.016 18.4 1.5 16 4-19 34-49 (82)
No 1
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.49 E-value=3.3e-14 Score=124.29 Aligned_cols=167 Identities=16% Similarity=0.194 Sum_probs=109.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCccC--ccceeeehHHHHhcceeeeEeeeccccCCccHHHHHHHHHHHHHhHhhccCC
Q 021348 42 SLPPVSKTYGVACLMATAAFYLQLYN--PKNIALKYEDVIKRFQVWRVVTNFFFLGPFSFRFAFRLIIIAKYGVSLERGP 119 (313)
Q Consensus 42 ~iPpVTR~~~~~~v~~sll~~~g~i~--p~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~~~~lf~ly~ly~ys~~LE~~~ 119 (313)
+.||||+.+++.|+++.++..+.-.. ..++.++++. .++.|+||++|+.|.|++ .+|+++||+.++.+++.+|+..
T Consensus 2 ~~~pvt~~li~~~v~vf~~~~~~~~~~~~~~~~~~p~~-~~~~~~wrl~T~~f~H~~-~~Hl~~Nm~~l~~~g~~~E~~~ 79 (181)
T 2xov_A 2 RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDP-TLKFEFWRYFTHALMHFS-LMHILFNLLWWWYLGGAVEKRL 79 (181)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSG-GGTTCTTHHHHGGGCCCS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCcHHHHHhhcCChhh-ccCCCCHHHHHHHHHccC-HHHHHHHHHHHHHHHHHHHHHh
Confidence 56999999999999999887653211 1234455553 456799999999999998 6999999999999999999976
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhhcCCCCCCch-HHHHHHH-HH--hhhccCCCceEEEEEeeeeccchHHHHHHHHHH
Q 021348 120 FDKRTADYLWMLMFGALSLLVMAAIPPLRTPFMG-PSLVFMM-VY--IWGREFPNARISIYGVVSLKGFYLPWAMLALEL 195 (313)
Q Consensus 120 F~~~~adyl~~llf~~~~i~lla~~~~~~~~fl~-~~l~~al-~Y--vWsr~np~~~v~~~gli~ika~yLP~vll~~~~ 195 (313)
++.+|+.+.+.+++...+.+.+. .+....| ++.++.+ .+ +.++++|+.++. ++.+...+-.+.+++++
T Consensus 80 ---G~~~fl~~yl~~~i~~~l~~~~~-~~~~~vGaSGai~gl~g~~~~~~~~~p~~~~~----l~~~~~~~~~~~~~~~~ 151 (181)
T 2xov_A 80 ---GSGKLIVITLISALLSGYVQQKF-SGPWFGGLSGVVYALMGYVWLRGERDPQSGIY----LQRGLIIFALIWIVAGW 151 (181)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHH-HCSCCCCSHHHHHHHHHHHHHHHHHCGGGSCC----CCHHHHHHHHHHHHHHH
T ss_pred ---ChHHHHHHHHHHHHHHHHHHHHh-cCCCceeHHHHHHHHHHHHHHHHhhCcCceee----eHHHHHHHHHHHHHHHH
Confidence 47788876666655444444331 1222333 3333222 22 236778887653 23333222222233443
Q ss_pred Hh----cCChhhhHHhhhhHHHHhhhh
Q 021348 196 IF----GNPLLPAILGMVAGHLYYFLT 218 (313)
Q Consensus 196 l~----~~~~~~~l~GI~vGhlY~fL~ 218 (313)
.. +-+...|+.|+++|.++-++.
T Consensus 152 ~~~~~~~v~~~aHlgG~l~G~l~~~~~ 178 (181)
T 2xov_A 152 FDLFGMSMANGAHIAGLAVGLAMAFVD 178 (181)
T ss_dssp TTSSCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhccccchHHHHHHHHHHHHHHHHHH
Confidence 32 224699999999999997653
No 2
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.23 E-value=8.7e-12 Score=110.21 Aligned_cols=167 Identities=14% Similarity=0.199 Sum_probs=108.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHcCccC--ccceeeehHHHHhcceeeeEeeeccccCCccHHHHHHHHHHHHHhHhhccC
Q 021348 41 NSLPPVSKTYGVACLMATAAFYLQLYN--PKNIALKYEDVIKRFQVWRVVTNFFFLGPFSFRFAFRLIIIAKYGVSLERG 118 (313)
Q Consensus 41 ~~iPpVTR~~~~~~v~~sll~~~g~i~--p~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~~~~lf~ly~ly~ys~~LE~~ 118 (313)
.+.||||+.+++.|+++.++..+.-.. ..++.++++.+ .+.|+||++|+.|.|++ .+|+++||+.++..+..+|+.
T Consensus 6 ~~~~pvt~~li~~~v~vfll~~~~~~~~~~~~~~~~p~~~-~~~~~wrl~T~~flH~~-~~Hl~~Nm~~l~~~G~~lE~~ 83 (196)
T 2nr9_A 6 AQQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEE-QDSEVWRYISHTLVHLS-NLHILFNLSWFFIFGGMIERT 83 (196)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGG-GGGCTTHHHHGGGCCSS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCHhhc-ccCCcHHHHHHHHHccC-HHHHHHHHHHHHHHHHHHHHH
Confidence 356999999999999999887653111 12345666555 56799999999999988 899999999999999999997
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHhhcCCCCCCch-HHHHHHHH-Hh--hhccCCCceEEEEEeeeeccchHHHHHHHHH
Q 021348 119 PFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFMG-PSLVFMMV-YI--WGREFPNARISIYGVVSLKGFYLPWAMLALE 194 (313)
Q Consensus 119 ~F~~~~adyl~~llf~~~~i~lla~~~~~~~~fl~-~~l~~al~-Yv--Wsr~np~~~v~~~gli~ika~yLP~vll~~~ 194 (313)
. ++..|+.+.+.+++...+.+.+. .+....| ++.+++++ +. ..+.+|+. + .++.+...+-.+.++++
T Consensus 84 ~---G~~~~l~~yl~~~~~~~l~~~~~-~~~~~vGaSGai~gl~g~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~ 154 (196)
T 2nr9_A 84 F---GSVKLLMLYVVASAITGYVQNYV-SGPAFFGLSGVVYAVLGYVFIRDKLNHHL-F----DLPEGFFTMLLVGIALG 154 (196)
T ss_dssp H---CHHHHHHHHHHHHHHHHHHHHHH-HCSCCCCSHHHHHHHHHHHHHHHHSSTTS-C----CCCCSSTTTTTTTTTHH
T ss_pred H---ChHHHHHHHHHHHHHHHHHHHHh-cCCCeeeHHHHHHHHHHHHHHHHHhcchh-h----cchHHHHHHHHHHHHHH
Confidence 6 46777765555555443433331 1222332 33333222 22 24456655 2 23444443333334455
Q ss_pred HHhc-----CChhhhHHhhhhHHHHhhhh
Q 021348 195 LIFG-----NPLLPAILGMVAGHLYYFLT 218 (313)
Q Consensus 195 ~l~~-----~~~~~~l~GI~vGhlY~fL~ 218 (313)
++.. -+...|+.|+++|.++-++.
T Consensus 155 ~~~~~~~~~v~~~aHlgG~l~G~l~~~~~ 183 (196)
T 2nr9_A 155 FISPLFGVEMGNAAHISGLIVGLIWGFID 183 (196)
T ss_dssp HHSCSSCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHHHHH
Confidence 5432 24699999999999987754
No 3
>1ss6_A P47, NSFL1 cofactor P47, P47 protein, P97; , SEP, signaling protein; NMR {Homo sapiens} SCOP: d.245.1.1
Probab=53.92 E-value=3.4 Score=32.28 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=11.1
Q ss_pred CcccCCcccccCC
Q 021348 300 GVAFRGRSYRLDG 312 (313)
Q Consensus 300 ~~~F~G~g~Rlg~ 312 (313)
-.+|.|.|||||+
T Consensus 82 ~~~F~G~G~~LGs 94 (102)
T 1ss6_A 82 FKAFTGEGQKLGS 94 (102)
T ss_dssp STTSCSSSSSGGG
T ss_pred ccCCcccCeECCC
Confidence 3579999999996
No 4
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=38.78 E-value=18 Score=28.89 Aligned_cols=14 Identities=36% Similarity=0.527 Sum_probs=11.1
Q ss_pred ccCCCCccCCCCCC
Q 021348 262 AFRGRSYSLSGTRS 275 (313)
Q Consensus 262 ~~~g~g~rLg~~~~ 275 (313)
+|.|.|||||+..+
T Consensus 9 ~F~G~G~~Lgs~~p 22 (127)
T 1s3s_G 9 AFTGEGQKLGSTAP 22 (127)
T ss_dssp -CCSCCCCCCSSCC
T ss_pred CceecCeECCCCCC
Confidence 68899999998643
No 5
>2jpk_A Bacteriocin lactococcin-G subunit beta; peptide, antimicrobial, membrane bound, antimicrobial protein; NMR {Lactococcus lactis} PDB: 2jpm_A
Probab=13.04 E-value=1.1e+02 Score=18.72 Aligned_cols=17 Identities=41% Similarity=0.524 Sum_probs=13.7
Q ss_pred ccchHHHHHHHHHHHhc
Q 021348 182 KGFYLPWAMLALELIFG 198 (313)
Q Consensus 182 ka~yLP~vll~~~~l~~ 198 (313)
|.+||||+.-+.+++-+
T Consensus 2 ~~~wl~w~~pay~fi~g 18 (35)
T 2jpk_A 2 KWGWLAWVDPAYEFIKG 18 (35)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CcccccccchHHHHHHH
Confidence 46799999999888754
No 6
>1w8x_P Protein P16, protein S, GPS; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=5.76 E-value=2.3e+02 Score=21.25 Aligned_cols=22 Identities=32% Similarity=0.869 Sum_probs=17.6
Q ss_pred chHHHHHHHHHhhhccCCCceE
Q 021348 152 MGPSLVFMMVYIWGREFPNARI 173 (313)
Q Consensus 152 l~~~l~~al~YvWsr~np~~~v 173 (313)
.+..++..+++.|-|..|-.+|
T Consensus 10 vggglvliliwlwfrnrpaaqv 31 (117)
T 1w8x_P 10 VGGGLVLILIWLWFRNRPAAQV 31 (117)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCS
T ss_pred ecCchhhHHHHHHHccChHHHH
Confidence 4678888888889888887766
No 7
>1emz_A Envelope glycoprotein E1; peptide, transmembrane domain, envelope protein E1, hepatitis C virus, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=5.71 E-value=2.3e+02 Score=16.48 Aligned_cols=13 Identities=31% Similarity=0.713 Sum_probs=10.0
Q ss_pred HhhhhHHHHhhhh
Q 021348 206 LGMVAGHLYYFLT 218 (313)
Q Consensus 206 ~GI~vGhlY~fL~ 218 (313)
-|++.|+.||...
T Consensus 4 wGvl~glayfsm~ 16 (26)
T 1emz_A 4 WGVLAGIAYFSMV 16 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHh
Confidence 4788899998653
No 8
>3nsw_A Excretory-secretory protein 2; hookworm, excretory-secretory protei merohedral twinning, immunomodulator, netrin domain, immune; HET: EPE; 1.75A {Ancylostoma ceylanicum}
Probab=5.47 E-value=1.7e+02 Score=21.61 Aligned_cols=8 Identities=38% Similarity=0.978 Sum_probs=5.3
Q ss_pred cceeeeEe
Q 021348 81 RFQVWRVV 88 (313)
Q Consensus 81 ~~QiWRLi 88 (313)
+.|+||+.
T Consensus 39 nlqywrly 46 (106)
T 3nsw_A 39 NLQYWRLY 46 (106)
T ss_dssp EEEEEEEC
T ss_pred cceeEEEe
Confidence 45777775
No 9
>1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Aquifex aeolicus} SCOP: c.124.1.6
Probab=3.70 E-value=3.3e+02 Score=22.72 Aligned_cols=11 Identities=55% Similarity=0.773 Sum_probs=9.4
Q ss_pred cccCCcccccC
Q 021348 301 VAFRGRSYRLD 311 (313)
Q Consensus 301 ~~F~G~g~Rlg 311 (313)
.+|--+|+|||
T Consensus 120 vafD~~G~RLG 130 (194)
T 1sou_A 120 VAFDLEGYRLG 130 (194)
T ss_dssp SCBCSSSCBCC
T ss_pred eEECCCCceec
Confidence 57888999998
No 10
>2kon_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Chromobacterium violaceum}
Probab=3.42 E-value=4.7e+02 Score=18.43 Aligned_cols=16 Identities=44% Similarity=0.584 Sum_probs=12.0
Q ss_pred CCcccCCCCCCCCCcc
Q 021348 4 NRTTRTPSNTTYPKAS 19 (313)
Q Consensus 4 ~~~~~~~~~~~~~~~~ 19 (313)
.-..|||-.||||.--
T Consensus 34 gvpdrtpipttypefy 49 (82)
T 2kon_A 34 GVPDRTPIPTTYPEFY 49 (82)
T ss_dssp SCTTSCCCCBCCSCCC
T ss_pred CCCCCCCCCccCcchh
Confidence 3456899999999743
Done!