BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021349
(313 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XHE|B Chain B, Crystal Structure Of The Unc18-Syntaxin 1 Complex From
Monosiga Brevicollis
Length = 279
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 122/234 (52%), Gaps = 16/234 (6%)
Query: 61 IRDVLGRLQEANEQSKSLHKPEALKLL---RHKINKDVVTVLKR----ARNIKSHLEDMD 113
IRD + +++A EQ LH + + R ++N+ + + R I++ L+ ++
Sbjct: 53 IRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIE 112
Query: 114 RANAANKRLSGCKEGTPI--YRTRIAVTNGLRKKLKELMMEFQGLRQKMMTEYKETVGRR 171
+ N ++ ++GT R R + + L +K ++M + ++ + Y E V R+
Sbjct: 113 KENKRAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQ 172
Query: 172 YFTVTGEYPNEDVIEKIISDNNGSEEFLTHAIQEHGRGKVLETVVEIQDRHDTAKEIEKS 231
V ++D I+K+I +G+E + E K+ EI+DRH +++E+S
Sbjct: 173 CRVVEPSL-SDDAIQKVI--EHGTEGIFSGMRLEGAEAKL----NEIRDRHKDIQQLERS 225
Query: 232 LLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQRSNR 285
LLELH++F DM+ +V +QGE +D IE V + +YVK T+++ A+ YQ S R
Sbjct: 226 LLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHYQESAR 279
>pdb|3C98|B Chain B, Revised Structure Of The Munc18a-Syntaxin1 Complex
Length = 279
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 119/238 (50%), Gaps = 18/238 (7%)
Query: 57 EMEEIRDVLGRLQEANEQSKSLHK-----PEALKLLRHKINKDVVTVLKRARNIKSHLED 111
++EEIR + ++ E E+ K H P + + ++ + + + K A ++S L+
Sbjct: 48 QVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKS 107
Query: 112 MDRANAANKRLSGCKEGTPIYRTRIAVTNGLRKKLKELMMEFQGLRQKMMTEYKETV-GR 170
++++ + G + R R + L +K E+M E+ + ++Y+E GR
Sbjct: 108 IEQSIEQEE---GLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQ----SDYRERCKGR 160
Query: 171 --RYFTVTGEYPNEDVIEKIISDNNGSEEFLTHAIQEHGRGKVLETVVEIQDRHDTAKEI 228
R +TG + +E ++ N + F + I + K + + EI+ RH ++
Sbjct: 161 IQRQLEITGRTTTSEELEDMLESGNPAI-FASGIIMDSSISK--QALSEIETRHSEIIKL 217
Query: 229 EKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQRSNRK 286
E S+ ELH +F+DMA++VE+QGE +D IE++V +A YV+ + K A YQ R+
Sbjct: 218 ENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARR 275
>pdb|3HD7|B Chain B, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3HD7|F Chain F, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3IPD|B Chain B, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
pdb|3IPD|F Chain F, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
Length = 109
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 46/70 (65%)
Query: 217 EIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKT 276
EI+ RH ++E S+ ELH +F+DMA++VE+QGE +D IE++V +A YV+ + K
Sbjct: 15 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 74
Query: 277 AKDYQRSNRK 286
A YQ R+
Sbjct: 75 AVKYQSKARR 84
>pdb|1JTH|B Chain B, Crystal Structure And Biophysical Properties Of A Complex
Between The N-Terminal Region Of Snap25 And The Snare
Region Of Syntaxin 1a
pdb|1JTH|D Chain D, Crystal Structure And Biophysical Properties Of A Complex
Between The N-Terminal Region Of Snap25 And The Snare
Region Of Syntaxin 1a
Length = 77
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 46/70 (65%)
Query: 217 EIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKT 276
EI+ RH ++E S+ ELH +F+DMA++VE+QGE +D IE++V +A YV+ + K
Sbjct: 4 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 63
Query: 277 AKDYQRSNRK 286
A YQ R+
Sbjct: 64 AVKYQSKARR 73
>pdb|1HVV|A Chain A, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
pdb|1HVV|B Chain B, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
pdb|1HVV|C Chain C, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
pdb|1HVV|D Chain D, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
Length = 75
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 46/70 (65%)
Query: 217 EIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKT 276
EI+ RH ++E S+ ELH +F+DMA++VE+QGE +D IE++V +A YV+ + K
Sbjct: 5 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 64
Query: 277 AKDYQRSNRK 286
A YQ R+
Sbjct: 65 AVKYQSKARR 74
>pdb|1SFC|B Chain B, Neuronal Synaptic Fusion Complex
pdb|1SFC|F Chain F, Neuronal Synaptic Fusion Complex
pdb|1SFC|J Chain J, Neuronal Synaptic Fusion Complex
Length = 83
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 217 EIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKT 276
EI+ RH ++E S+ ELH +F+DMA++VE+QGE +D IE++V +A YV+ + K
Sbjct: 15 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 74
Query: 277 AKDYQRSNR 285
A YQ R
Sbjct: 75 AVKYQSKAR 83
>pdb|1L4A|B Chain B, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 88
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%)
Query: 213 ETVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTK 272
+T+ +I+ RH ++E S+ ELH +F+DMA++VE+QGE +D IE++V A Y++
Sbjct: 16 QTLADIEARHADIMKLETSIRELHDMFMDMAMLVESQGEMIDRIEYNVEAAVDYIETAKV 75
Query: 273 ELKTAKDYQRSNR 285
+ K A YQ R
Sbjct: 76 DTKKAVKYQSKAR 88
>pdb|1URQ|B Chain B, Crystal Structure Of Neuronal Q-Snares In Complex With
R-Snare Motif Of Tomosyn
Length = 75
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 46/69 (66%)
Query: 213 ETVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTK 272
+ + EI+ RH ++E S+ ELH +F+DMA++VE+QGE +D IE++V +A YV+
Sbjct: 6 QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVS 65
Query: 273 ELKTAKDYQ 281
+ K A YQ
Sbjct: 66 DTKKAVKYQ 74
>pdb|1N7S|B Chain B, High Resolution Structure Of A Truncated Neuronal Snare
Complex
Length = 68
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 42/61 (68%)
Query: 217 EIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKT 276
EI+ RH ++E S+ ELH +F+DMA++VE+QGE +D IE++V +A YV+ + K
Sbjct: 6 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 65
Query: 277 A 277
A
Sbjct: 66 A 66
>pdb|3RK2|B Chain B, Truncated Snare Complex
pdb|3RK2|F Chain F, Truncated Snare Complex
pdb|3RK3|B Chain B, Truncated Snare Complex With Complexin
pdb|3RL0|B Chain B, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|F Chain F, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|J Chain J, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|N Chain N, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|R Chain R, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|V Chain V, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|Z Chain Z, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|DD Chain d, Truncated Snare Complex With Complexin (P1)
Length = 65
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 41/59 (69%)
Query: 217 EIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELK 275
EI+ RH ++E S+ ELH +F+DMA++VE+QGE +D IE++V +A YV+ + K
Sbjct: 6 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTK 64
>pdb|1KIL|B Chain B, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX
Length = 62
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 39/52 (75%)
Query: 217 EIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVK 268
EI+ RH ++E S+ ELH +F+DMA++VE+QGE +D IE++V +A YV+
Sbjct: 6 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVE 57
>pdb|1FIO|A Chain A, Crystal Structure Of Yeast T-Snare Protein Sso1
Length = 196
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 143 RKKLKELMMEFQGLRQKMMTEYKETVGRRYFTVTGEYPNEDVIEKIISDNNGSEEFLTHA 202
R++ +L+ +++ + E KE R+Y + E ED +E ISD G + F
Sbjct: 90 RQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPE-ATEDEVEAAISDVGGQQIFSQAL 148
Query: 203 IQEHGRGKVLETVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMV 246
+ + RG+ + E+Q RH ++EKS+ EL Q+F DM +V
Sbjct: 149 LNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELV 192
>pdb|2NPS|B Chain B, Crystal Structure Of The Early Endosomal Snare Complex
Length = 71
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 45/68 (66%)
Query: 221 RHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDY 280
R +++E +L+++QIF D+A+M+ QG+ +D IE +V ++ +V+ + +L+ A Y
Sbjct: 4 RETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYY 63
Query: 281 QRSNRKWM 288
Q+ +RK M
Sbjct: 64 QKKSRKKM 71
>pdb|1GL2|B Chain B, Crystal Structure Of An Endosomal Snare Core Complex
Length = 65
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 40/62 (64%)
Query: 218 IQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTA 277
+ +R + +++E ++++++IF D+ +M+ QG+ +D IE +V +A +V+ ++L A
Sbjct: 4 MHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRA 63
Query: 278 KD 279
+
Sbjct: 64 AN 65
>pdb|3B5N|B Chain B, Structure Of The Yeast Plasma Membrane Snare Complex
pdb|3B5N|F Chain F, Structure Of The Yeast Plasma Membrane Snare Complex
pdb|3B5N|J Chain J, Structure Of The Yeast Plasma Membrane Snare Complex
Length = 69
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 214 TVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGT-- 271
+ E+Q RH ++EKS+ EL Q+F DM +V Q E +D I+ +V +A V+ G
Sbjct: 1 ALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGH 60
Query: 272 --KELKTAK 278
K +K+A+
Sbjct: 61 TDKAVKSAR 69
>pdb|3ZEY|G Chain G, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 151
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 10/56 (17%)
Query: 60 EIRDVLGRLQEANEQSKSLHKPEALKLLRHK-----INKDVVTVLKRARNIKSHLE 110
++RD +G Q N + + L++L+HK I +D+ ++KRA ++ HLE
Sbjct: 53 QLRDSMGIAQVKNVTGRKI-----LRILKHKGMAPEIPEDLYCLIKRATQMRKHLE 103
>pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
Length = 1151
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 6 TKSFTSYVDLKKEAMKDLEAGPDPDLEMTTSTNT 39
T F+ Y++L + A+ L+AG +P LE TS T
Sbjct: 972 TIGFSLYMELLENAVDALKAGREPSLEDLTSQQT 1005
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,338,354
Number of Sequences: 62578
Number of extensions: 320316
Number of successful extensions: 1002
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 971
Number of HSP's gapped (non-prelim): 45
length of query: 313
length of database: 14,973,337
effective HSP length: 99
effective length of query: 214
effective length of database: 8,778,115
effective search space: 1878516610
effective search space used: 1878516610
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)