Query 021349
Match_columns 313
No_of_seqs 170 out of 1325
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 09:31:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021349.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021349hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0810 SNARE protein Syntaxin 100.0 4.5E-53 9.8E-58 390.3 32.9 295 1-312 1-295 (297)
2 COG5074 t-SNARE complex subuni 100.0 8.5E-36 1.8E-40 259.6 28.3 250 46-310 22-274 (280)
3 KOG0809 SNARE protein TLG2/Syn 100.0 3.3E-33 7.1E-38 251.8 23.7 244 42-306 54-301 (305)
4 KOG0811 SNARE protein PEP12/VA 100.0 6E-29 1.3E-33 226.3 30.2 247 46-311 18-268 (269)
5 COG5325 t-SNARE complex subuni 99.9 6.2E-22 1.4E-26 177.6 28.0 250 36-306 25-278 (283)
6 cd00179 SynN Syntaxin N-termin 99.8 3.3E-19 7.1E-24 150.6 18.8 149 44-200 1-149 (151)
7 KOG0812 SNARE protein SED5/Syn 99.8 1.5E-16 3.2E-21 143.5 29.1 245 40-301 36-305 (311)
8 smart00503 SynN Syntaxin N-ter 99.5 4.4E-13 9.6E-18 108.1 16.1 115 43-164 2-116 (117)
9 PF05739 SNARE: SNARE domain; 99.5 4.9E-13 1.1E-17 96.5 10.6 63 220-282 1-63 (63)
10 PF00804 Syntaxin: Syntaxin; 99.4 8.1E-12 1.8E-16 98.0 15.5 103 43-150 1-103 (103)
11 cd00193 t_SNARE Soluble NSF (N 99.3 1.2E-11 2.6E-16 87.7 7.9 59 219-277 2-60 (60)
12 KOG3202 SNARE protein TLG1/Syn 99.2 2.3E-08 5E-13 90.0 26.0 225 45-304 6-232 (235)
13 smart00397 t_SNARE Helical reg 99.2 2.2E-10 4.9E-15 82.5 9.2 63 215-277 4-66 (66)
14 PF14523 Syntaxin_2: Syntaxin- 98.4 8.9E-06 1.9E-10 64.0 13.7 99 54-165 1-99 (102)
15 KOG3894 SNARE protein Syntaxin 98.3 0.00085 1.8E-08 62.4 25.8 88 214-301 223-310 (316)
16 PF00957 Synaptobrevin: Synapt 97.7 0.0012 2.5E-08 50.8 12.7 50 223-272 3-52 (89)
17 KOG3385 V-SNARE [Intracellular 97.5 0.00052 1.1E-08 54.7 8.3 82 220-303 33-114 (118)
18 KOG0860 Synaptobrevin/VAMP-lik 97.1 0.018 4E-07 46.2 12.6 81 223-307 29-114 (116)
19 COG5074 t-SNARE complex subuni 96.9 0.32 6.9E-06 43.8 24.2 60 218-277 187-246 (280)
20 KOG1666 V-SNARE [Intracellular 96.8 0.36 7.9E-06 42.8 24.8 83 225-310 137-219 (220)
21 KOG0810 SNARE protein Syntaxin 96.0 1.4 3.1E-05 41.4 25.5 62 215-276 205-266 (297)
22 KOG0811 SNARE protein PEP12/VA 95.7 1.7 3.8E-05 40.2 22.0 89 213-304 177-265 (269)
23 PF09753 Use1: Membrane fusion 95.5 0.27 5.8E-06 45.1 12.1 70 223-298 170-239 (251)
24 PF00957 Synaptobrevin: Synapt 94.7 1.5 3.1E-05 33.4 12.8 24 213-236 21-44 (89)
25 KOG3065 SNAP-25 (synaptosome-a 92.8 0.56 1.2E-05 43.5 8.3 57 220-276 215-271 (273)
26 PF09177 Syntaxin-6_N: Syntaxi 90.7 5.7 0.00012 30.8 10.8 93 46-148 2-95 (97)
27 PF09753 Use1: Membrane fusion 90.3 7.5 0.00016 35.5 12.9 88 216-306 155-244 (251)
28 PRK10884 SH3 domain-containing 89.7 14 0.00031 32.9 14.1 75 236-310 117-193 (206)
29 PF03904 DUF334: Domain of unk 89.5 13 0.00028 33.5 13.1 52 257-308 119-170 (230)
30 PF05478 Prominin: Prominin; 89.5 34 0.00073 36.8 30.5 55 225-281 359-413 (806)
31 PF03908 Sec20: Sec20; InterP 88.0 10 0.00022 29.0 12.5 43 247-289 32-74 (92)
32 KOG3251 Golgi SNAP receptor co 83.8 32 0.00069 30.8 23.1 41 246-286 152-192 (213)
33 COG5325 t-SNARE complex subuni 83.6 38 0.00082 31.5 25.8 89 213-305 192-280 (283)
34 KOG0859 Synaptobrevin/VAMP-lik 83.1 16 0.00034 32.3 10.0 85 223-310 125-213 (217)
35 PF12911 OppC_N: N-terminal TM 80.1 5.2 0.00011 27.4 5.0 35 276-310 7-41 (56)
36 PF10717 ODV-E18: Occlusion-de 77.3 2.7 5.9E-05 31.7 3.0 12 301-312 37-48 (85)
37 PF10779 XhlA: Haemolysin XhlA 77.2 25 0.00055 25.5 9.8 46 249-298 18-63 (71)
38 KOG0809 SNARE protein TLG2/Syn 77.1 65 0.0014 30.2 23.5 90 212-305 214-303 (305)
39 PHA02844 putative transmembran 73.4 4.6 0.0001 29.8 3.2 26 284-309 45-70 (75)
40 KOG0994 Extracellular matrix g 71.5 1.8E+02 0.0039 32.7 23.3 23 44-66 1424-1446(1758)
41 PF14992 TMCO5: TMCO5 family 71.4 89 0.0019 29.2 12.8 55 214-268 121-175 (280)
42 PHA03054 IMV membrane protein; 70.4 5.8 0.00013 29.0 3.2 25 284-308 45-69 (72)
43 PHA02819 hypothetical protein; 69.9 5.9 0.00013 28.9 3.1 25 284-308 43-67 (71)
44 PHA02650 hypothetical protein; 69.5 5.3 0.00011 29.9 2.8 25 284-308 46-70 (81)
45 PHA02975 hypothetical protein; 67.3 5.6 0.00012 28.9 2.5 26 283-308 40-65 (69)
46 PF02346 Vac_Fusion: Chordopox 65.0 43 0.00093 23.6 6.6 45 224-268 2-46 (57)
47 KOG0860 Synaptobrevin/VAMP-lik 64.3 76 0.0016 25.7 10.8 26 280-305 90-115 (116)
48 PF06789 UPF0258: Uncharacteri 62.1 2.1 4.6E-05 36.0 -0.5 17 270-286 115-131 (159)
49 PF04102 SlyX: SlyX; InterPro 61.5 55 0.0012 23.7 7.0 49 223-271 4-52 (69)
50 PF04505 Dispanin: Interferon- 61.1 6.1 0.00013 29.8 1.9 29 270-298 49-77 (82)
51 PF10496 Syntaxin-18_N: SNARE- 60.9 23 0.00049 26.7 5.1 64 5-72 3-66 (87)
52 PF11239 DUF3040: Protein of u 60.8 12 0.00027 28.0 3.6 20 252-271 10-29 (82)
53 PF00523 Fusion_gly: Fusion gl 59.0 15 0.00033 37.1 4.8 34 252-286 433-466 (490)
54 PF09889 DUF2116: Uncharacteri 58.9 34 0.00073 24.3 5.2 17 272-288 26-42 (59)
55 PF08412 Ion_trans_N: Ion tran 58.2 30 0.00065 25.9 5.1 26 286-311 46-71 (77)
56 PF09548 Spore_III_AB: Stage I 56.9 39 0.00084 28.9 6.5 28 271-298 137-165 (170)
57 KOG3202 SNARE protein TLG1/Syn 56.7 73 0.0016 29.0 8.4 17 246-262 147-163 (235)
58 PRK13865 type IV secretion sys 56.2 44 0.00094 30.3 6.9 25 287-311 41-65 (229)
59 PRK08307 stage III sporulation 56.1 40 0.00087 29.0 6.4 29 271-299 138-167 (171)
60 PF12575 DUF3753: Protein of u 55.9 17 0.00037 26.8 3.4 6 303-308 64-69 (72)
61 PRK04325 hypothetical protein; 55.9 80 0.0017 23.3 8.2 45 225-269 11-55 (74)
62 KOG3850 Predicted membrane pro 55.9 2.1E+02 0.0045 28.1 13.6 38 221-260 307-344 (455)
63 TIGR02833 spore_III_AB stage I 55.7 42 0.0009 28.8 6.4 29 271-299 137-166 (170)
64 PLN03160 uncharacterized prote 53.8 6.3 0.00014 35.4 1.1 27 282-308 31-57 (219)
65 PRK10573 type IV pilin biogene 53.8 1.7E+02 0.0036 28.4 11.1 38 228-265 111-148 (399)
66 PHA02692 hypothetical protein; 53.0 18 0.00038 26.5 3.0 24 285-308 43-67 (70)
67 PF06072 Herpes_US9: Alphaherp 53.0 72 0.0016 22.6 6.0 14 268-281 9-22 (60)
68 KOG2678 Predicted membrane pro 53.0 1.8E+02 0.0038 26.4 10.7 28 247-274 179-206 (244)
69 PF12352 V-SNARE_C: Snare regi 52.6 79 0.0017 22.2 10.2 54 225-278 10-63 (66)
70 cd00193 t_SNARE Soluble NSF (N 50.9 72 0.0016 21.3 8.4 55 228-282 4-58 (60)
71 KOG0812 SNARE protein SED5/Syn 50.6 2.2E+02 0.0048 26.8 12.7 94 215-308 212-309 (311)
72 PF05399 EVI2A: Ectropic viral 50.5 17 0.00037 32.4 3.2 17 287-303 131-147 (227)
73 PRK14762 membrane protein; Pro 50.1 27 0.00059 20.2 2.9 7 298-304 14-20 (27)
74 PF06143 Baculo_11_kDa: Baculo 48.6 23 0.00049 27.0 3.2 9 272-280 20-28 (84)
75 PF14575 EphA2_TM: Ephrin type 48.5 29 0.00063 25.7 3.7 20 289-308 3-22 (75)
76 PF10717 ODV-E18: Occlusion-de 48.4 27 0.00058 26.5 3.5 19 288-306 27-45 (85)
77 PF07412 Geminin: Geminin; In 47.1 1.2E+02 0.0025 27.0 7.8 63 195-258 105-167 (200)
78 KOG0859 Synaptobrevin/VAMP-lik 47.1 52 0.0011 29.2 5.6 65 247-311 136-210 (217)
79 PRK00295 hypothetical protein; 47.0 1.1E+02 0.0023 22.2 7.9 46 224-269 6-51 (68)
80 PF06072 Herpes_US9: Alphaherp 46.8 64 0.0014 22.9 4.9 9 302-310 50-58 (60)
81 COG4068 Uncharacterized protei 46.2 32 0.00069 24.3 3.3 9 274-282 33-41 (64)
82 PF05478 Prominin: Prominin; 45.8 4.2E+02 0.009 28.6 27.0 44 230-273 357-401 (806)
83 PF00804 Syntaxin: Syntaxin; 44.7 1.1E+02 0.0023 22.9 6.7 60 93-155 42-101 (103)
84 KOG2678 Predicted membrane pro 44.7 2.4E+02 0.0052 25.5 13.0 55 228-285 156-214 (244)
85 PRK00736 hypothetical protein; 44.6 1.2E+02 0.0026 21.9 7.8 46 224-269 6-51 (68)
86 PHA02673 ORF109 EEV glycoprote 44.4 26 0.00056 29.8 3.2 16 273-288 17-32 (161)
87 COG3736 VirB8 Type IV secretor 44.2 66 0.0014 29.4 6.1 42 270-311 26-68 (239)
88 PF11166 DUF2951: Protein of u 43.7 1.5E+02 0.0034 23.0 12.2 42 223-264 11-52 (98)
89 PRK02793 phi X174 lysis protei 43.6 1.3E+02 0.0028 22.0 7.8 47 223-269 8-54 (72)
90 PF05531 NPV_P10: Nucleopolyhe 43.1 1.4E+02 0.003 22.3 6.8 50 52-103 7-56 (75)
91 PF10368 YkyA: Putative cell-w 42.6 2.4E+02 0.0052 24.9 14.7 71 44-114 17-93 (204)
92 PF06789 UPF0258: Uncharacteri 41.6 18 0.0004 30.5 1.9 33 275-307 123-155 (159)
93 PF12575 DUF3753: Protein of u 41.1 25 0.00053 26.0 2.3 10 297-306 55-64 (72)
94 PF10267 Tmemb_cc2: Predicted 40.9 3.7E+02 0.0079 26.5 14.1 77 38-115 208-284 (395)
95 TIGR02120 GspF general secreti 40.9 3.4E+02 0.0073 26.2 11.0 31 238-268 325-355 (399)
96 PF00523 Fusion_gly: Fusion gl 40.8 23 0.00049 35.8 2.8 23 255-277 442-464 (490)
97 PF15605 Toxin_52: Putative to 39.8 1.9E+02 0.004 22.9 7.1 72 18-107 28-99 (103)
98 KOG3065 SNAP-25 (synaptosome-a 39.3 79 0.0017 29.5 5.9 44 232-275 88-131 (273)
99 PRK02119 hypothetical protein; 39.1 1.5E+02 0.0034 21.7 8.0 47 223-269 9-55 (73)
100 PF01519 DUF16: Protein of unk 38.7 2E+02 0.0042 22.8 7.9 46 222-267 52-97 (102)
101 KOG1029 Endocytic adaptor prot 38.5 5.4E+02 0.012 27.8 12.8 27 90-116 532-558 (1118)
102 PHA02675 ORF104 fusion protein 38.5 1.8E+02 0.0038 22.2 6.8 40 229-268 36-75 (90)
103 PHA02819 hypothetical protein; 38.4 28 0.00061 25.5 2.2 29 279-307 35-63 (71)
104 PHA03240 envelope glycoprotein 38.1 30 0.00065 31.0 2.8 18 286-303 214-231 (258)
105 KOG1666 V-SNARE [Intracellular 37.3 1.1E+02 0.0025 27.3 6.3 50 259-308 164-214 (220)
106 TIGR02120 GspF general secreti 36.8 3.8E+02 0.0083 25.8 10.7 41 228-268 113-153 (399)
107 KOG0995 Centromere-associated 36.3 5E+02 0.011 26.8 21.2 58 41-100 220-277 (581)
108 PF11598 COMP: Cartilage oligo 36.1 84 0.0018 21.0 4.0 27 227-253 5-31 (45)
109 PRK13872 conjugal transfer pro 35.7 1.1E+02 0.0024 27.4 6.2 7 304-310 59-65 (228)
110 PF14812 PBP1_TM: Transmembran 35.7 2.2 4.7E-05 32.3 -4.0 12 281-292 61-72 (81)
111 PHA02844 putative transmembran 35.7 34 0.00073 25.3 2.3 28 280-307 38-65 (75)
112 PF12166 DUF3595: Protein of u 35.3 30 0.00065 33.9 2.7 22 287-308 63-84 (422)
113 PF00435 Spectrin: Spectrin re 34.6 1.8E+02 0.0039 21.1 10.6 65 40-105 32-96 (105)
114 PHA03049 IMV membrane protein; 34.1 53 0.0012 23.8 3.0 14 294-307 10-23 (68)
115 smart00150 SPEC Spectrin repea 34.1 1.8E+02 0.0039 21.0 8.6 36 40-75 29-64 (101)
116 PRK10404 hypothetical protein; 33.7 2.3E+02 0.0051 22.2 11.2 43 253-296 40-90 (101)
117 PF05961 Chordopox_A13L: Chord 33.7 63 0.0014 23.5 3.3 16 292-307 8-23 (68)
118 COG1315 Uncharacterized conser 33.4 2.4E+02 0.0051 28.7 8.4 73 46-118 407-486 (543)
119 PF07432 Hc1: Histone H1-like 33.0 2.6E+02 0.0057 22.6 7.1 48 93-156 4-51 (123)
120 COG4942 Membrane-bound metallo 31.9 5.1E+02 0.011 25.8 10.4 60 218-277 40-99 (420)
121 COG1459 PulF Type II secretory 31.8 4.5E+02 0.0097 25.8 10.1 38 230-267 112-149 (397)
122 PRK13673 hypothetical protein; 31.5 51 0.0011 26.7 3.0 20 220-239 37-56 (118)
123 PF00517 GP41: Retroviral enve 31.3 1.2E+02 0.0026 26.9 5.6 15 221-235 106-120 (204)
124 PF05957 DUF883: Bacterial pro 31.3 2.3E+02 0.005 21.4 11.9 16 284-299 71-86 (94)
125 PRK15041 methyl-accepting chem 31.0 5.8E+02 0.013 25.9 28.0 54 216-269 433-486 (554)
126 PHA02650 hypothetical protein; 30.2 56 0.0012 24.5 2.7 25 283-307 42-66 (81)
127 PHA03395 p10 fibrous body prot 29.6 2.6E+02 0.0056 21.4 6.5 56 53-114 8-63 (87)
128 PF05667 DUF812: Protein of un 29.6 6.6E+02 0.014 26.1 22.7 37 221-257 545-581 (594)
129 PF05739 SNARE: SNARE domain; 29.4 1.9E+02 0.0041 19.8 9.0 49 223-271 11-59 (63)
130 PRK11020 hypothetical protein; 28.9 3.1E+02 0.0067 22.1 8.5 48 54-101 3-50 (118)
131 PHA03054 IMV membrane protein; 28.8 63 0.0014 23.7 2.7 25 283-307 41-65 (72)
132 PF10749 DUF2534: Protein of u 28.8 67 0.0015 24.3 2.9 14 286-299 13-26 (85)
133 PF08372 PRT_C: Plant phosphor 28.1 3.3E+02 0.0072 23.1 7.4 27 215-244 54-80 (156)
134 KOG0972 Huntingtin interacting 27.8 5.1E+02 0.011 24.6 9.0 29 89-117 230-258 (384)
135 PF07432 Hc1: Histone H1-like 27.5 2.7E+02 0.0059 22.5 6.3 45 235-279 2-46 (123)
136 PRK04406 hypothetical protein; 27.4 2.6E+02 0.0055 20.7 8.4 47 223-269 11-57 (75)
137 PF00429 TLV_coat: ENV polypro 27.2 2.7E+02 0.0058 28.8 8.0 34 220-253 432-465 (561)
138 PRK00846 hypothetical protein; 27.0 2.7E+02 0.0059 20.8 7.9 48 223-270 13-60 (77)
139 PRK13887 conjugal transfer pro 27.0 1.8E+02 0.004 26.4 6.2 27 284-310 52-79 (250)
140 PF04210 MtrG: Tetrahydrometha 26.9 2.6E+02 0.0056 20.5 7.4 14 261-274 22-35 (70)
141 COG4068 Uncharacterized protei 26.6 1.7E+02 0.0038 20.7 4.5 16 281-296 37-52 (64)
142 COG2443 Sss1 Preprotein transl 26.6 2.5E+02 0.0055 20.3 5.6 47 256-302 4-54 (65)
143 PF15106 TMEM156: TMEM156 prot 26.5 69 0.0015 28.6 3.1 25 279-303 168-192 (226)
144 PHA02642 C-type lectin-like pr 26.4 30 0.00066 31.1 0.9 26 285-310 48-74 (216)
145 PF01544 CorA: CorA-like Mg2+ 26.3 4.7E+02 0.01 23.4 11.5 17 137-153 114-130 (292)
146 PRK09400 secE preprotein trans 26.3 2.2E+02 0.0047 20.2 5.1 31 259-289 6-36 (61)
147 PF01486 K-box: K-box region; 26.2 3E+02 0.0065 21.1 8.9 58 38-98 8-65 (100)
148 PF04888 SseC: Secretion syste 25.5 5.4E+02 0.012 23.8 9.7 40 262-301 34-75 (306)
149 smart00080 LIF_OSM leukemia in 25.1 3.5E+02 0.0077 22.9 6.9 95 7-112 28-124 (157)
150 smart00397 t_SNARE Helical reg 25.0 2.2E+02 0.0048 19.1 9.7 56 225-280 7-62 (66)
151 smart00502 BBC B-Box C-termina 24.8 3.2E+02 0.007 20.9 8.8 66 214-279 22-89 (127)
152 PF10661 EssA: WXG100 protein 24.5 1.1E+02 0.0023 25.8 3.8 13 248-260 79-91 (145)
153 PRK10573 type IV pilin biogene 24.4 6.4E+02 0.014 24.2 10.7 40 227-267 314-353 (399)
154 COG4640 Predicted membrane pro 24.1 1E+02 0.0022 30.2 4.0 16 269-284 31-46 (465)
155 PF12751 Vac7: Vacuolar segreg 24.0 67 0.0015 31.3 2.8 21 290-310 302-322 (387)
156 PF05008 V-SNARE: Vesicle tran 23.8 2.8E+02 0.0062 19.9 8.4 29 219-247 21-49 (79)
157 PHA03046 Hypothetical protein; 23.5 4.3E+02 0.0092 21.9 7.1 45 223-267 84-128 (142)
158 PHA02414 hypothetical protein 23.3 3.7E+02 0.008 21.1 8.5 44 224-267 30-73 (111)
159 PRK04778 septation ring format 23.1 8.3E+02 0.018 25.0 24.1 78 33-114 55-133 (569)
160 PF13198 DUF4014: Protein of u 23.1 83 0.0018 23.1 2.5 9 279-287 8-16 (72)
161 PRK09458 pspB phage shock prot 22.9 86 0.0019 23.3 2.6 17 291-307 5-21 (75)
162 PF10173 Mit_KHE1: Mitochondri 22.7 59 0.0013 28.5 2.0 39 269-307 118-157 (187)
163 PF04906 Tweety: Tweety; Inte 22.7 2.4E+02 0.0053 27.7 6.5 7 233-239 128-134 (406)
164 PRK10884 SH3 domain-containing 22.7 5.4E+02 0.012 22.8 13.4 54 255-310 143-197 (206)
165 PF05546 She9_MDM33: She9 / Md 22.6 5.6E+02 0.012 22.9 20.0 27 285-311 151-177 (207)
166 PRK10381 LPS O-antigen length 22.6 88 0.0019 30.5 3.4 10 287-296 40-49 (377)
167 TIGR03185 DNA_S_dndD DNA sulfu 22.2 9E+02 0.02 25.2 15.2 15 142-156 484-498 (650)
168 PF09164 VitD-bind_III: Vitami 22.1 1.3E+02 0.0029 21.8 3.3 14 178-191 27-40 (68)
169 PF07851 TMPIT: TMPIT-like pro 21.9 7.2E+02 0.016 23.9 11.1 20 54-73 2-21 (330)
170 PTZ00478 Sec superfamily; Prov 21.8 3E+02 0.0064 20.8 5.3 31 253-283 13-43 (81)
171 KOG3251 Golgi SNAP receptor co 21.7 5.6E+02 0.012 23.0 7.9 21 282-302 185-205 (213)
172 KOG0250 DNA repair protein RAD 21.6 1.2E+03 0.025 26.2 27.4 52 214-265 363-415 (1074)
173 PHA02513 V1 structural protein 21.5 1.3E+02 0.0028 24.1 3.5 22 289-310 69-90 (135)
174 PF06667 PspB: Phage shock pro 21.5 1E+02 0.0022 22.9 2.8 16 291-306 5-20 (75)
175 KOG1693 emp24/gp25L/p24 family 21.5 4E+02 0.0088 23.7 6.8 18 219-236 127-144 (209)
176 PF06657 Cep57_MT_bd: Centroso 21.4 3.5E+02 0.0076 20.1 10.3 66 40-105 8-73 (79)
177 KOG2927 Membrane component of 21.3 65 0.0014 31.0 2.1 23 285-307 188-210 (372)
178 PF13121 DUF3976: Domain of un 21.2 63 0.0014 20.5 1.3 8 289-296 23-30 (41)
179 TIGR03752 conj_TIGR03752 integ 20.9 8.8E+02 0.019 24.5 10.9 29 40-68 57-85 (472)
180 COG1459 PulF Type II secretory 20.7 7.8E+02 0.017 24.2 9.5 53 215-268 300-352 (397)
181 PF11837 DUF3357: Domain of un 20.4 34 0.00073 27.1 0.0 20 284-303 25-44 (106)
182 COG2966 Uncharacterized conser 20.2 1.5E+02 0.0032 27.2 4.2 48 255-302 94-141 (250)
No 1
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.5e-53 Score=390.29 Aligned_cols=295 Identities=41% Similarity=0.627 Sum_probs=259.7
Q ss_pred CCcchhhhhhchhhhhhhhhhhhcCCCCCCccccccCCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 021349 1 MNDLMTKSFTSYVDLKKEAMKDLEAGPDPDLEMTTSTNTMDQNLNLFLAEAENVKKEMEEIRDVLGRLQEANEQSKSLHK 80 (313)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~ 80 (313)
|||+++.+|.+|++...+.- |.+ |. +.+ +..+..|..||..|++|+..|..+...+.+|..+|.+. +.+
T Consensus 1 M~d~~~~~~~~~~~~~~e~~-~~~-~~------~~~-~~~~~~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~--l~~ 69 (297)
T KOG0810|consen 1 MNDRLSELLARSVSEDNELD-DVE-GH------TGS-ADGDSNLEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKS--LHS 69 (297)
T ss_pred CccccHHHHcCchhhccccc-ccc-cc------cCC-CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH--hcc
Confidence 89999999999974333222 333 22 222 23448899999999999999999999999999999654 556
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 81 PEALKLLRHKINKDVVTVLKRARNIKSHLEDMDRANAANKRLSGCKEGTPIYRTRIAVTNGLRKKLKELMMEFQGLRQKM 160 (313)
Q Consensus 81 ~~~~~~l~~~i~~l~~ei~~~~~~ik~~Lk~l~~~~~~~~~~~~~~~~s~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~ 160 (313)
+...+.++++++.++.++.+.++.|+..|+.+++++...+..++| ++..|+|++++..+.++|.++|++|+.++.+|
T Consensus 70 ~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~~~---~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~ 146 (297)
T KOG0810|consen 70 PNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQNRS---SAGLRTRRTQTSALSKKLKELMNEFNRTQSKY 146 (297)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC---CccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667789999999999999999999999999999998764443333 34578999999999999999999999999999
Q ss_pred HHHHHHHhhhhhccccCCCCChhHHHHHhhCCCCchHHhHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 161 MTEYKETVGRRYFTVTGEYPNEDVIEKIISDNNGSEEFLTHAIQEHGRGKVLETVVEIQDRHDTAKEIEKSLLELHQIFL 240 (313)
Q Consensus 161 ~~~yk~~i~Rr~~~v~~~~~s~eeie~~ie~g~~~~~~~q~~l~~~~~~q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~ 240 (313)
+..|+++++|||.++.+..+++++++.++++|+ ++.|++..+. ++++++..+.++++||.+|++||++|.|||+||.
T Consensus 147 r~~~k~~i~Rql~i~~~~~~~de~ie~~ie~g~-~~~f~~~~i~--~~~~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFl 223 (297)
T KOG0810|consen 147 REEYKERIQRQLFIVGGEETTDEEIEEMIESGG-SEVFTQKAIQ--DRGQAKQTLAEIQERHDEIKKLEKSIRELHQLFL 223 (297)
T ss_pred HHHHHHHHHHHHhhhCCCcCChHHHHHHHHCCC-hHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998776655899999999999987 7778887776 4667789999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhccCCC
Q 021349 241 DMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQRSNRKWMCVGIILLLLIILLIVIPIATSFSS 312 (313)
Q Consensus 241 ~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c~~~~~~~ii~~ii~~~i~~~~~~ 312 (313)
|||.||+.||+|||+||+||.+|.+||++|..++.+|.+||+++|||+||+|++++|+++++++|+++||+.
T Consensus 224 DMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~v~v~~i~~~~~~ 295 (297)
T KOG0810|consen 224 DMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIVVLVVVIVVPLVL 295 (297)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHHHHhhhhcccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999975
No 2
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=100.00 E-value=8.5e-36 Score=259.56 Aligned_cols=250 Identities=24% Similarity=0.416 Sum_probs=215.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 021349 46 LFLAEAENVKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRARNIKSHLEDMDRANAANKRLSGC 125 (313)
Q Consensus 46 ~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~ei~~~~~~ik~~Lk~l~~~~~~~~~~~~~ 125 (313)
.|......|+..++.+...+..+..+|.+.+...+......++..|+..+.+.+.+-..++..++..+.. +-
T Consensus 22 ~f~~~i~si~~n~s~~e~~i~qi~~~h~d~L~Ev~e~~~~~~~~~ldnf~s~t~~Lq~~~k~di~~~e~~--------~i 93 (280)
T COG5074 22 TFMNKILSINKNLSVYEKEINQIDNLHKDLLTEVFEEQSRKLRRSLDNFSSQTTDLQRNLKKDIKSAERD--------GI 93 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhc--------cc
Confidence 4667999999999999999999999999988777777777899999999999999999999999887653 11
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCCChhHHHHHhhCCCCchHHhHHHHHh
Q 021349 126 KEGTPIYRTRIAVTNGLRKKLKELMMEFQGLRQKMMTEYKETVGRRYFTVTGEYPNEDVIEKIISDNNGSEEFLTHAIQE 205 (313)
Q Consensus 126 ~~~s~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~yk~~i~Rr~~~v~~~~~s~eeie~~ie~g~~~~~~~q~~l~~ 205 (313)
-+..++.|-.+.+.+|.+++++|+.++.+|+..|+++.+|||. +..|++|+++++..+.+.+ .+++|.++++.
T Consensus 94 -----hl~~k~aQae~~r~Kf~~~I~~yr~i~~~yree~~e~~rrQy~-Ia~P~ATEdeve~aInd~n-G~qvfsqalL~ 166 (280)
T COG5074 94 -----HLANKQAQAENVRQKFLKLIQDYRIIDSNYREEEKEQARRQYI-IAQPEATEDEVEAAINDVN-GQQVFSQALLN 166 (280)
T ss_pred -----chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhh-hcCCccchHHHHHHhcccc-hHHHHHHHHHh
Confidence 1245778888999999999999999999999999999988865 5679999999999998887 56777777664
Q ss_pred -hhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 021349 206 -HGRGKVLETVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQRSN 284 (313)
Q Consensus 206 -~~~~q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~ 284 (313)
++++.++.+|.++++||++|++||++|.||.+||++|+.||.+|.+++|.|+.|+..+.++|++|+.++.+|.+|.+++
T Consensus 167 anr~geAktaL~Evq~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaa 246 (280)
T COG5074 167 ANRRGEAKTALAEVQARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAA 246 (280)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHH
Confidence 5678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hh--hHHHHHHHHHHHHHHHHHHHhccC
Q 021349 285 RK--WMCVGIILLLLIILLIVIPIATSF 310 (313)
Q Consensus 285 rk--~~c~~~~~~~ii~~ii~~~i~~~~ 310 (313)
|| |.||+||+++|++++.++.-++||
T Consensus 247 Rkkki~c~gI~~iii~viv~vv~~v~~~ 274 (280)
T COG5074 247 RKKKIRCYGICFIIIIVIVVVVFKVVPF 274 (280)
T ss_pred HhcceehhhhHHHHHHHHHHHHhcccch
Confidence 84 667776666555544444334444
No 3
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-33 Score=251.77 Aligned_cols=244 Identities=20% Similarity=0.282 Sum_probs=188.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021349 42 QNLNLFLAEAENVKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRARNIKSHLEDMDRANAANKR 121 (313)
Q Consensus 42 ~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~ei~~~~~~ik~~Lk~l~~~~~~~~~ 121 (313)
..+|.|.+.+++|...+..++.++.+|.++|.+++ .++-.+...-+.+|+.++.+|+.+++.|.+.|+.+...
T Consensus 54 ~lpP~wvd~~~ev~~~l~rvrrk~~eLgk~~~Khl-~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~------ 126 (305)
T KOG0809|consen 54 GLPPAWVDVAEEVDYYLSRVRRKIDELGKAHAKHL-RPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSAS------ 126 (305)
T ss_pred CCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 34778999999999999999999999999999987 45445555568999999999999999999999988653
Q ss_pred hcCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhccccCCCCChhHHHHHhhCCCCchHH
Q 021349 122 LSGCKEGTP-IYRTRIAVTNGLRKKLKELMMEFQGLRQKMMTEYKETVGR--RYFTVTGEYPNEDVIEKIISDNNGSEEF 198 (313)
Q Consensus 122 ~~~~~~~s~-~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~yk~~i~R--r~~~v~~~~~s~eeie~~ie~g~~~~~~ 198 (313)
.+..++ +..+++|.+..++.+++.++.+||..|.+|-+..+.+-.+ .|..-..+.....+.+.+ +...
T Consensus 127 ---~n~~~~~e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~~~~~~dd~d~------~~~~ 197 (305)
T KOG0809|consen 127 ---LNQLSPSERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDNTVDLPDDEDF------SDRT 197 (305)
T ss_pred ---cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhccccccCcchhhh------hhhh
Confidence 122234 4568999999999999999999999875544443333221 111111111111111111 1122
Q ss_pred h-HHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 199 L-THAIQEHGRGKVLETVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTA 277 (313)
Q Consensus 199 ~-q~~l~~~~~~q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA 277 (313)
| +++++ ........+.+|.+||.++.+||.||++||+||+.||.+||.+|||||||++++..+|+.|.++|.||
T Consensus 198 ~qe~ql~-----~~e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KA 272 (305)
T KOG0809|consen 198 FQEQQLM-----LFENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKA 272 (305)
T ss_pred HHHHHHH-----HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHH
Confidence 2 22221 12345678899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcchhhHHHHHHHHHHHHHHHHHHH
Q 021349 278 KDYQRSNRKWMCVGIILLLLIILLIVIPI 306 (313)
Q Consensus 278 ~~~qk~~rk~~c~~~~~~~ii~~ii~~~i 306 (313)
..|||+++|++||++++++||++++++.+
T Consensus 273 e~yQk~~~k~~~i~~L~l~ii~llvllil 301 (305)
T KOG0809|consen 273 ERYQKRNKKMKVILMLTLLIIALLVLLIL 301 (305)
T ss_pred HHHHhcCCceEehHHHHHHHHHHHHHHHh
Confidence 99999999999999999988887776643
No 4
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6e-29 Score=226.33 Aligned_cols=247 Identities=22% Similarity=0.291 Sum_probs=189.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 021349 46 LFLAEAENVKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRARNIKSHLEDMDRANAANKRLSGC 125 (313)
Q Consensus 46 ~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~ei~~~~~~ik~~Lk~l~~~~~~~~~~~~~ 125 (313)
+|-..+.+|...|..+...+..|.+.+. ..+++.+..+++++++.....+.++++.+...|+.+... .
T Consensus 18 ~~~~l~~~i~~~i~~i~~~~~~l~r~~~---~lgt~~ds~~lr~kl~~~~~~~~~~vkdt~~~lke~~~~-------~-- 85 (269)
T KOG0811|consen 18 DFQQLAQEIAANIQRINQQVLSLLRFLN---SLGTKSDSPELRDKLHQERLNANQLVKDTSALLKEIDTL-------R-- 85 (269)
T ss_pred cHhHHHHHHHHHHHHHhHHHHHHHHHHH---HcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------c--
Confidence 5778889999999999999999988875 467788888899999999999999999999999988763 1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCCC---hhHHHHHhhCCC-CchHHhHH
Q 021349 126 KEGTPIYRTRIAVTNGLRKKLKELMMEFQGLRQKMMTEYKETVGRRYFTVTGEYPN---EDVIEKIISDNN-GSEEFLTH 201 (313)
Q Consensus 126 ~~~s~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~yk~~i~Rr~~~v~~~~~s---~eeie~~ie~g~-~~~~~~q~ 201 (313)
+ +...+..+.+...|.+.|..++++|+.+|...-...+ +.-+ ..+...+ +++-+..-+.+. ++..-.+.
T Consensus 86 ~--~~~~~~~k~~~~kL~~ef~~~l~efq~vQrk~ae~ek--~~~~---a~~s~~s~~~~~~~~~~~~~~~~~~~~~~q~ 158 (269)
T KOG0811|consen 86 L--ESDLRQLKIQLDKLVDEFSAALKEFQKVQRKSAEREK--IPMV---ARGSQNSQQLDEESPRVDELSNNGSQSQQQL 158 (269)
T ss_pred c--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc--cccc---ccccccchhhhhhhhhhhhhhccchhhhhHH
Confidence 1 3456889999999999999999999999876655544 1100 0011111 111111111111 01111110
Q ss_pred HHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 202 AIQEHGRGKVLETVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQ 281 (313)
Q Consensus 202 ~l~~~~~~q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q 281 (313)
....+....+...+..+++|.+.|.+||..|.|||+||+|||.||++||++||.||+||++|..+|+.|..+|.+|.+|+
T Consensus 159 e~~~q~~e~~~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq 238 (269)
T KOG0811|consen 159 EEQAQDNEILEYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQ 238 (269)
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111123457789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHhccCC
Q 021349 282 RSNRKWMCVGIILLLLIILLIVIPIATSFS 311 (313)
Q Consensus 282 k~~rk~~c~~~~~~~ii~~ii~~~i~~~~~ 311 (313)
+++|||+||++++++++++++.+.++..+.
T Consensus 239 ~~~~k~~~~ll~v~~~v~lii~l~i~~~~~ 268 (269)
T KOG0811|consen 239 RKARKKKCILLLVGGPVGLIIGLIIAGIAA 268 (269)
T ss_pred HHhcCchhhhhHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999888887776543
No 5
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.91 E-value=6.2e-22 Score=177.59 Aligned_cols=250 Identities=22% Similarity=0.283 Sum_probs=160.3
Q ss_pred cCCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 36 STNTMDQNLNLFLAEAENVKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRARNIKSHLEDMDRA 115 (313)
Q Consensus 36 ~~~~~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~ei~~~~~~ik~~Lk~l~~~ 115 (313)
...+.+...|.|......+...+..+..++..+..-+.+... ..+.+...-.+.|..+...++.....+..-++.....
T Consensus 25 ~~~e~~~l~p~~i~~~~~v~~~l~~vrr~~~~l~~~y~k~~~-p~f~~k~~k~~ei~~L~~kv~~~l~~~~ki~~~~~~~ 103 (283)
T COG5325 25 HRKEDDALTPTFILSAASVDQELTAVRRSISRLGKVYAKHTE-PSFSDKSEKEDEIDELSKKVNQDLQRCEKILKTKYKN 103 (283)
T ss_pred hHHhhhccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567788899999999999999999999999887776533 3333332333445555555555555544444432221
Q ss_pred HHHhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hc--cccCCCCChhHH-HHHhhC
Q 021349 116 NAANKRLSGCKEGTPIYRTRIAVTNGLRKKLKELMMEFQGLRQKMMTEYKETVGRR-YF--TVTGEYPNEDVI-EKIISD 191 (313)
Q Consensus 116 ~~~~~~~~~~~~~s~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~yk~~i~Rr-~~--~v~~~~~s~eei-e~~ie~ 191 (313)
.. +. .....|.+.+......++.+|++...-.+....+. .+ ...+..+-+++- +.....
T Consensus 104 ~~-----------s~------~~~~kll~~~nt~~~~~~~iq~~~aq~r~~~~~~~k~l~~~~~~~~~l~eee~e~~~~~ 166 (283)
T COG5325 104 LQ-----------SS------FLQSKLLRDLNTECMEGQRIQQKSAQFRKYQVLQAKFLRNKNNDQHPLEEEEDEESLSS 166 (283)
T ss_pred HH-----------HH------HHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhHHHHhcccccCchhhhhhhhhhhc
Confidence 10 00 01345556666666666666655433322222111 01 112211112222 222221
Q ss_pred CCCchHHhHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 021349 192 NNGSEEFLTHAIQEHGRGKVLETVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGT 271 (313)
Q Consensus 192 g~~~~~~~q~~l~~~~~~q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~ 271 (313)
. |+++..++.-+.+ .+.......+.+|.++|.+|+++|.||++||.||+.+|.+||+.||+||+|++++..|++.|+
T Consensus 167 ~-~sq~~lqq~~l~~--ee~~~qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~ 243 (283)
T COG5325 167 L-GSQQTLQQQGLSN--EELEYQQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNAN 243 (283)
T ss_pred c-chhhHHHHhhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhH
Confidence 2 2344444321111 122334455899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHH
Q 021349 272 KELKTAKDYQRSNRKWMCVGIILLLLIILLIVIPI 306 (313)
Q Consensus 272 ~~L~kA~~~qk~~rk~~c~~~~~~~ii~~ii~~~i 306 (313)
++|.||..|||+.+||..|++++++||.+++++.+
T Consensus 244 kEL~kA~~hqrrt~k~~~~~Llil~vv~lfv~l~~ 278 (283)
T COG5325 244 KELEKAPAHQRRTKKCRFYLLLILLVVLLFVSLIK 278 (283)
T ss_pred HHHHHhHHHHhhhccchhhHHHHHHHHHHHHHHHH
Confidence 99999999999999988777777766665555533
No 6
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=99.84 E-value=3.3e-19 Score=150.64 Aligned_cols=149 Identities=27% Similarity=0.426 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021349 44 LNLFLAEAENVKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRARNIKSHLEDMDRANAANKRLS 123 (313)
Q Consensus 44 ~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~ei~~~~~~ik~~Lk~l~~~~~~~~~~~ 123 (313)
|+.||+.|+.|+..|..|+..+..|+.+|...+...+ ..+.++.+++.+..+++.+++.++..|+.|...... .+
T Consensus 1 ~~~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~--~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~---~~ 75 (151)
T cd00179 1 LEEFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPD--ADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQ---NE 75 (151)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hc
Confidence 5799999999999999999999999999998765543 356789999999999999999999999999886532 11
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCCChhHHHHHhhCCCCchHHhH
Q 021349 124 GCKEGTPIYRTRIAVTNGLRKKLKELMMEFQGLRQKMMTEYKETVGRRYFTVTGEYPNEDVIEKIISDNNGSEEFLT 200 (313)
Q Consensus 124 ~~~~~s~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~yk~~i~Rr~~~v~~~~~s~eeie~~ie~g~~~~~~~q 200 (313)
. .+++++.|++++++.+|.++|+++|++|+.+|..|+..|++++.|+|.+ .+|++|++++++++++|. ++.|++
T Consensus 76 ~-~~~s~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq~~i-~~~~~tdeei~~~~~~~~-~~~~~~ 149 (151)
T cd00179 76 A-LNGSSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQLEI-TGGEATDEELEDMLESGN-SEIFTS 149 (151)
T ss_pred c-cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCChHHHHHHHHcCC-hhhhcC
Confidence 1 2257889999999999999999999999999999999999999999765 578999999999999985 555554
No 7
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.5e-16 Score=143.46 Aligned_cols=245 Identities=18% Similarity=0.228 Sum_probs=163.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021349 40 MDQNLNLFLAEAENVKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRARNIKSHLEDMDRANAAN 119 (313)
Q Consensus 40 ~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~ei~~~~~~ik~~Lk~l~~~~~~~ 119 (313)
....-.+|...+..|...|..--.++.+|..|.++. ++.+.+. -+|..++--|+.....+...|-.+..-..
T Consensus 36 ~~~~~seF~~~A~~Ig~~is~T~~kl~kLa~lAKrk-s~f~Dr~-----VeI~eLT~iikqdi~sln~~i~~Lqei~~-- 107 (311)
T KOG0812|consen 36 TVSQGSEFNKKASRIGKEISQTGAKLEKLAQLAKRK-SLFDDRP-----VEIQELTFIIKQDITSLNSQIAQLQEIVK-- 107 (311)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccCcc-----hhhHHHHHHHhcchHHHHHHHHHHHHHHH--
Confidence 344445999999999999999999999999998753 3333221 34555565555555555555554443221
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccC-----C-CCCh-----hHHHHH
Q 021349 120 KRLSGCKEGTPIYRTRIAVTNGLRKKLKELMMEFQGLRQKMMTEYKETVGRRYFTVTG-----E-YPNE-----DVIEKI 188 (313)
Q Consensus 120 ~~~~~~~~~s~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~yk~~i~Rr~~~v~~-----~-~~s~-----eeie~~ 188 (313)
..|..++.....+.++.+..|..++..+...|+.+.+-.....++.-.|+.....+ + +.++ .-...+
T Consensus 108 --~~gn~s~~~~~~Hs~~vV~~Lqs~la~is~~fk~VLE~Rtenmka~k~R~dkfs~~~a~~~a~p~~n~~a~~~~~~~l 185 (311)
T KOG0812|consen 108 --ANGNLSNKQLVQHSKNVVVSLQSKLANISKDFKDVLEIRTENMKAVKNRRDKFSASYASLNANPVSNSAARLHPLKLL 185 (311)
T ss_pred --HhccccchHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHhccccCCCCCcccCcccccCCchhhh
Confidence 12222222224678899999999999999999999876666666554443221111 1 0000 000001
Q ss_pred -------------hhCCCC-chHHhHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 021349 189 -------------ISDNNG-SEEFLTHAIQEHGRGKVLETVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMD 254 (313)
Q Consensus 189 -------------ie~g~~-~~~~~q~~l~~~~~~q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id 254 (313)
++.|.. .++.-|..++ .+..+++++|...+..||.+|.||.+||.+||+||.+|||++.
T Consensus 186 ~~~~~~~sq~~~~ln~gd~~~~qqqQm~ll-------~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~ 258 (311)
T KOG0812|consen 186 VDPKDEASQDVESLNMGDSSNPQQQQMALL-------DESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQ 258 (311)
T ss_pred cCchhhcccccccccccCCCCCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111110 0111111111 2336789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Q 021349 255 DIEHHVMNASHYVKDGTKELKTAKDYQRSNRKWMCVGIILLLLIILL 301 (313)
Q Consensus 255 ~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c~~~~~~~ii~~i 301 (313)
|||.||+.+..+++.|..+|.|....-+++|+.+.=++.+++|++++
T Consensus 259 RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmvkiF~i~ivFflv 305 (311)
T KOG0812|consen 259 RIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLMVKIFGILIVFFLV 305 (311)
T ss_pred HHHhcchhhhhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999977765554444444433333
No 8
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=99.54 E-value=4.4e-13 Score=108.13 Aligned_cols=115 Identities=30% Similarity=0.451 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021349 43 NLNLFLAEAENVKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRARNIKSHLEDMDRANAANKRL 122 (313)
Q Consensus 43 ~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~ei~~~~~~ik~~Lk~l~~~~~~~~~~ 122 (313)
+|+.|++.|++|+..|..|+..+..|..+|.+.+..++ ..+.++.+++.+..+++.+++.|+..|+.|+..... .
T Consensus 2 ~~~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~---~ 76 (117)
T smart00503 2 NLDEFFEKVEEIRANIQKISQNVAELQKLHEELLTPPD--ADKELREKLERLIDDIKRLAKEIRAKLKELEKENLE---N 76 (117)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh---h
Confidence 58899999999999999999999999999998765443 346789999999999999999999999999886532 1
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 123 SGCKEGTPIYRTRIAVTNGLRKKLKELMMEFQGLRQKMMTEY 164 (313)
Q Consensus 123 ~~~~~~s~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~y 164 (313)
+. .++++.|++++++..|.++|+++|++|+.+|..|+..|
T Consensus 77 ~~--~~~~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~ 116 (117)
T smart00503 77 RA--SGSASDRTRKAQTEKLRKKFKEVMNEFQRLQRKYRERE 116 (117)
T ss_pred cc--cCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 11 24678899999999999999999999999987776655
No 9
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.48 E-value=4.9e-13 Score=96.45 Aligned_cols=63 Identities=41% Similarity=0.623 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021349 220 DRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQR 282 (313)
Q Consensus 220 ~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk 282 (313)
+|+++|..|+.++.+|++||.+|+.+|.+||++||+|+.|++.|..++.+|..+|.+|.+|+|
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~k 63 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQK 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 688999999999999999999999999999999999999999999999999999999999986
No 10
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=99.43 E-value=8.1e-12 Score=98.01 Aligned_cols=103 Identities=18% Similarity=0.319 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021349 43 NLNLFLAEAENVKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRARNIKSHLEDMDRANAANKRL 122 (313)
Q Consensus 43 ~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~ei~~~~~~ik~~Lk~l~~~~~~~~~~ 122 (313)
+|+.|++.|++|+..|..|+..++.|..+|.+.+..+. .+...+.+++.++.+|+.+++.|+..|+.|+..... .
T Consensus 1 ~~~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~--~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~---~ 75 (103)
T PF00804_consen 1 FMPEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPD--QDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNED---S 75 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---h
Confidence 58999999999999999999999999999998876665 336789999999999999999999999999987531 2
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 021349 123 SGCKEGTPIYRTRIAVTNGLRKKLKELM 150 (313)
Q Consensus 123 ~~~~~~s~~~rir~~~~~~L~~~f~~~~ 150 (313)
.+.++++++.|++++++..|+++|+++|
T Consensus 76 ~~~~~~~~~~ri~~nq~~~L~~kf~~~m 103 (103)
T PF00804_consen 76 EGEEPSSNEVRIRKNQVQALSKKFQEVM 103 (103)
T ss_dssp HCTT--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHHHHHHHHHC
Confidence 2345567889999999999999999986
No 11
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.30 E-value=1.2e-11 Score=87.74 Aligned_cols=59 Identities=47% Similarity=0.635 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 219 QDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTA 277 (313)
Q Consensus 219 ~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA 277 (313)
++|++++..|+.+|.+|+.||.+|+.+|.+||++||+|++|++.+..++..|..+|.+|
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ka 60 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKKA 60 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 58999999999999999999999999999999999999999999999999999999875
No 12
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=2.3e-08 Score=89.95 Aligned_cols=225 Identities=17% Similarity=0.221 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-
Q 021349 45 NLFLAEAENVKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRARNIKSHLEDMDRANAANKRLS- 123 (313)
Q Consensus 45 ~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~ei~~~~~~ik~~Lk~l~~~~~~~~~~~- 123 (313)
..|+....++.+....++..+.+...+-.. + ......++..+.. .|...++.++....-....+
T Consensus 6 Dp~~~v~~e~~k~~~~~~~~~~r~~~~~~~----~--------~~~~~~~t~~lr~---~i~~~~edl~~~~~il~~~~~ 70 (235)
T KOG3202|consen 6 DPFFRVKNETLKLSEEIQGLYQRRSELLKD----T--------GSDAEELTSVLRR---SIEEDLEDLDELISILERNPS 70 (235)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhh----c--------cchhHHHHHHHHH---HhHHHHHHHHHHHHHHHhCcc
Confidence 368888888888888888888888776543 1 1222334444442 23333333332211100112
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCCChhHHHHHhh-CCCCchHHhHHH
Q 021349 124 GCKEGTPIYRTRIAVTNGLRKKLKELMMEFQGLRQKMMTEYKETVGRRYFTVTGEYPNEDVIEKIIS-DNNGSEEFLTHA 202 (313)
Q Consensus 124 ~~~~~s~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~yk~~i~Rr~~~v~~~~~s~eeie~~ie-~g~~~~~~~q~~ 202 (313)
..+....+.+-|+..+..+..++..+-..|... ..-...-|.. ..+++..+...+.+-. .|. . ..+.
T Consensus 71 ~~~ide~El~~R~~~i~~lr~q~~~~~~~~~~~------~~~~~~~r~~--l~~~~~~~~~~~~~~~~~~~--D-~v~~- 138 (235)
T KOG3202|consen 71 KFGIDEFELSRRRRFIDNLRTQLRQMKSKMAMS------GFANSNIRDI--LLGPEKSPNLDEAMSRASGL--D-NVQE- 138 (235)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh------ccccccchhh--hcCCCCCCchhhhHHHhhcc--C-cHHH-
Confidence 222334567889999999998888877777641 1011111221 2344443321122111 111 0 0010
Q ss_pred HHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021349 203 IQEHGRGKVLETVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQR 282 (313)
Q Consensus 203 l~~~~~~q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk 282 (313)
.....-..+++..+.+..|+.+|+-++.|-..|+..+.+||.+||..++.++.+...+..+.+.|.+..+ .+
T Consensus 139 -------~~~~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~-~~ 210 (235)
T KOG3202|consen 139 -------IVQLQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR-MA 210 (235)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 1112234677888999999999999999999999999999999999999999999999999999999998 55
Q ss_pred cchhhHHHHHHHHHHHHHHHHH
Q 021349 283 SNRKWMCVGIILLLLIILLIVI 304 (313)
Q Consensus 283 ~~rk~~c~~~~~~~ii~~ii~~ 304 (313)
+.+.+||+++++++++++++++
T Consensus 211 s~~~~~~~il~l~~~~~lvv~i 232 (235)
T KOG3202|consen 211 SQCSQWCAILLLVGLLLLVVII 232 (235)
T ss_pred ccccchhHHHHHHHHHHHHHHH
Confidence 5566666665555554444443
No 13
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=99.17 E-value=2.2e-10 Score=82.55 Aligned_cols=63 Identities=43% Similarity=0.570 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 215 VVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTA 277 (313)
Q Consensus 215 l~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA 277 (313)
...+++|+++|..|+.++.+++.||.+|+.+|.+|+++||+|+++++.+..++..|...|.+|
T Consensus 4 ~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~~ 66 (66)
T smart00397 4 DQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKKA 66 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 457889999999999999999999999999999999999999999999999999999999775
No 14
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=98.44 E-value=8.9e-06 Score=63.98 Aligned_cols=99 Identities=18% Similarity=0.273 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCHHHH
Q 021349 54 VKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRARNIKSHLEDMDRANAANKRLSGCKEGTPIYR 133 (313)
Q Consensus 54 I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~ei~~~~~~ik~~Lk~l~~~~~~~~~~~~~~~~s~~~r 133 (313)
|...|..|+..+..|+.+.+ .++++.|..+++++|+.++..++.+++.+...|+.+.... ......+
T Consensus 1 is~~l~~in~~v~~l~k~~~---~lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~----------~~~~~~~ 67 (102)
T PF14523_consen 1 ISSNLFKINQNVSQLEKLVN---QLGTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSLS----------SDRSNDR 67 (102)
T ss_dssp -HHHHHHHHHHHHHHHHHHH---HH-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH--------------HHH
T ss_pred CchHHHHHHHHHHHHHHHHH---HhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------hhhhhhH
Confidence 45667788888888877765 3578889999999999999999999999999999887630 1234578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 134 TRIAVTNGLRKKLKELMMEFQGLRQKMMTEYK 165 (313)
Q Consensus 134 ir~~~~~~L~~~f~~~~~~fq~~q~~~~~~yk 165 (313)
..+.+...|.+.|..++++|+.+|..|....+
T Consensus 68 ~~k~~~~KL~~df~~~l~~fq~~q~~~~~~~k 99 (102)
T PF14523_consen 68 QQKLQREKLSRDFKEALQEFQKAQRRYAEKEK 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88899999999999999999998866655443
No 15
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.00085 Score=62.37 Aligned_cols=88 Identities=24% Similarity=0.343 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHH
Q 021349 214 TVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQRSNRKWMCVGII 293 (313)
Q Consensus 214 ~l~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c~~~~ 293 (313)
-+....+-.+++..|++.+.|+..|-.-++.=|-+|..-||.|-.++..|.+|+..|+..|.+|.....+.|+|+.++++
T Consensus 223 l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf~ll 302 (316)
T KOG3894|consen 223 LLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLFFLL 302 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHHHHHH
Confidence 35566777899999999999999999999999999999999999999999999999999999999999889999988877
Q ss_pred HHHHHHHH
Q 021349 294 LLLLIILL 301 (313)
Q Consensus 294 ~~~ii~~i 301 (313)
|+.++++.
T Consensus 303 vlsf~lLF 310 (316)
T KOG3894|consen 303 VLSFSLLF 310 (316)
T ss_pred HHHHHHHH
Confidence 77766544
No 16
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=97.75 E-value=0.0012 Score=50.76 Aligned_cols=50 Identities=20% Similarity=0.316 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 021349 223 DTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTK 272 (313)
Q Consensus 223 ~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~ 272 (313)
+.+.++...+.++..+..+=-.-+.+.|+-|+.++...+.-......-.+
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k 52 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKK 52 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHH
Confidence 35677888888888887777777789999999999877665554444333
No 17
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.00052 Score=54.70 Aligned_cols=82 Identities=17% Similarity=0.327 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Q 021349 220 DRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQRSNRKWMCVGIILLLLII 299 (313)
Q Consensus 220 ~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c~~~~~~~ii~ 299 (313)
+-++.+..+...|.-|..+--+++..|..|..++|.++...+.+..........++.-.+. ++++.+||.++.++|++
T Consensus 33 ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~--sg~~l~~~m~~f~lV~~ 110 (118)
T KOG3385|consen 33 ENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR--SGISLLCWMAVFSLVAF 110 (118)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHH
Confidence 4445678888999999999999999999999999999999999999999999999776665 67888888877776666
Q ss_pred HHHH
Q 021349 300 LLIV 303 (313)
Q Consensus 300 ~ii~ 303 (313)
+|++
T Consensus 111 fi~~ 114 (118)
T KOG3385|consen 111 FILW 114 (118)
T ss_pred HHhh
Confidence 5544
No 18
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.018 Score=46.17 Aligned_cols=81 Identities=21% Similarity=0.372 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHh----cchhhHHHHHHHHHH
Q 021349 223 DTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKEL-KTAKDYQR----SNRKWMCVGIILLLL 297 (313)
Q Consensus 223 ~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L-~kA~~~qk----~~rk~~c~~~~~~~i 297 (313)
+.+...+..+.++-+++.+==.=|-+-|+-|+.+++-.+.- +.|..+. ..|.+-++ ++-|++.|++++++|
T Consensus 29 ~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L----~~~as~F~~~A~klkrk~wWkn~Km~~il~~v~~i 104 (116)
T KOG0860|consen 29 DKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQL----QAGASQFEKTAVKLKRKMWWKNCKMRIILGLVIII 104 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777777776666778888888888765442 2222222 22333332 333555555555555
Q ss_pred HHHHHHHHHh
Q 021349 298 IILLIVIPIA 307 (313)
Q Consensus 298 i~~ii~~~i~ 307 (313)
++++|+++++
T Consensus 105 ~l~iiii~~~ 114 (116)
T KOG0860|consen 105 LLVVIIIYIF 114 (116)
T ss_pred HHHHHHHHHh
Confidence 5555555544
No 19
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=96.88 E-value=0.32 Score=43.77 Aligned_cols=60 Identities=13% Similarity=0.260 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 218 IQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTA 277 (313)
Q Consensus 218 i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA 277 (313)
+..-.+-+.+|..-..++.+|..+=..+|..=...+...+.|++.+..++.+|.+-..+|
T Consensus 187 ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaa 246 (280)
T COG5074 187 IKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAA 246 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHH
Confidence 333333344444444444444445555555545555555566666666666666554333
No 20
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=0.36 Score=42.81 Aligned_cols=83 Identities=22% Similarity=0.273 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHH
Q 021349 225 AKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQRSNRKWMCVGIILLLLIILLIVI 304 (313)
Q Consensus 225 i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c~~~~~~~ii~~ii~~ 304 (313)
|+.=.+-+.|--+|=.+|-.-.+.|.+.|.+--.-+-.+..++.++.+-|..-.+.- -..||.|..++++.++ +|++
T Consensus 137 l~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~-~~nk~~~~aii~~l~~--~il~ 213 (220)
T KOG1666|consen 137 LKDSQRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRL-IRNKFTLTAIIALLVL--AILL 213 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH--HHHH
Confidence 333334444445555566666689999999888888888888888888775544333 2345666555544433 4444
Q ss_pred HHhccC
Q 021349 305 PIATSF 310 (313)
Q Consensus 305 ~i~~~~ 310 (313)
.++++|
T Consensus 214 ilY~kf 219 (220)
T KOG1666|consen 214 ILYSKF 219 (220)
T ss_pred HHHHhc
Confidence 455554
No 21
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.99 E-value=1.4 Score=41.43 Aligned_cols=62 Identities=16% Similarity=0.212 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 215 VVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKT 276 (313)
Q Consensus 215 l~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~k 276 (313)
-.++..=.+.|.+|+.--.++..|...=+.+|..=...+.+-..+|+.+..++.+|.+.-++
T Consensus 205 h~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkk 266 (297)
T KOG0810|consen 205 HDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKK 266 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555556666666666665444333
No 22
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.71 E-value=1.7 Score=40.23 Aligned_cols=89 Identities=15% Similarity=0.199 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHH
Q 021349 213 ETVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQRSNRKWMCVGI 292 (313)
Q Consensus 213 ~~l~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c~~~ 292 (313)
.....+++-+.+|..+..=..+|..|..+=+.+|..=.+.|++-..||+.+..++.+|...=.++++.. --.+|+++
T Consensus 177 eR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~---~~ll~v~~ 253 (269)
T KOG0811|consen 177 EREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKK---CILLLVGG 253 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch---hhhhHHHH
Confidence 345677888899999999999999999999999999999999999999999999999998876654433 23455566
Q ss_pred HHHHHHHHHHHH
Q 021349 293 ILLLLIILLIVI 304 (313)
Q Consensus 293 ~~~~ii~~ii~~ 304 (313)
+++++++++|+.
T Consensus 254 ~v~lii~l~i~~ 265 (269)
T KOG0811|consen 254 PVGLIIGLIIAG 265 (269)
T ss_pred HHHHHHHHHHHH
Confidence 666555555443
No 23
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=95.46 E-value=0.27 Score=45.06 Aligned_cols=70 Identities=16% Similarity=0.209 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Q 021349 223 DTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQRSNRKWMCVGIILLLLI 298 (313)
Q Consensus 223 ~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c~~~~~~~ii 298 (313)
+++..+-+++.+= -.-++..+.+-..+|++.+..++.....+......|..- .+++.+||.|++++++++
T Consensus 170 ~em~~La~~LK~~---s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~---~~~~~~~~~~~~i~~v~~ 239 (251)
T PF09753_consen 170 EEMLSLARQLKEN---SLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEH---SSKSWGCWTWLMIFVVII 239 (251)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcccHHHHHHHHHHHH
Confidence 3444444444443 444567799999999999999999999999999988664 233333554444443333
No 24
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=94.65 E-value=1.5 Score=33.40 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 021349 213 ETVVEIQDRHDTAKEIEKSLLELH 236 (313)
Q Consensus 213 ~~l~~i~~R~~~i~~ie~~i~el~ 236 (313)
..+..+-+|.+.+..|+....+|.
T Consensus 21 ~Ni~~ll~Rge~L~~L~~kt~~L~ 44 (89)
T PF00957_consen 21 ENIDKLLERGEKLEELEDKTEELS 44 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCchHHHHHHHHHHHH
Confidence 445556666666666665555544
No 25
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.81 E-value=0.56 Score=43.52 Aligned_cols=57 Identities=26% Similarity=0.358 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 220 DRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKT 276 (313)
Q Consensus 220 ~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~k 276 (313)
+-+..+..|-.-+..|..|--+|+..|+.|.+.||+|+++++.....|..++..+++
T Consensus 215 eiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~k 271 (273)
T KOG3065|consen 215 EIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKK 271 (273)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHh
Confidence 455668888889999999999999999999999999999999999999999887754
No 26
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=90.73 E-value=5.7 Score=30.77 Aligned_cols=93 Identities=13% Similarity=0.199 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-C
Q 021349 46 LFLAEAENVKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRARNIKSHLEDMDRANAANKRLS-G 124 (313)
Q Consensus 46 ~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~ei~~~~~~ik~~Lk~l~~~~~~~~~~~-~ 124 (313)
.|+...+++...|..++..+.....+... +. ....+..+..++...+..+...|.+|+..+.-....| .
T Consensus 2 PF~~v~~ev~~sl~~l~~~~~~~~~~~~~----~~------~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~k 71 (97)
T PF09177_consen 2 PFFVVKDEVQSSLDRLESLYRRWQRLRSD----TS------SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSK 71 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTH----CC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc----CC------CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 58999999999999999888888766431 11 2356667778888888888888888888654311111 0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Q 021349 125 CKEGTPIYRTRIAVTNGLRKKLKE 148 (313)
Q Consensus 125 ~~~~s~~~rir~~~~~~L~~~f~~ 148 (313)
++-+..+..-|+..+..+...+..
T Consensus 72 F~l~~~Ei~~Rr~fv~~~~~~i~~ 95 (97)
T PF09177_consen 72 FNLSEEEISRRRQFVSAIRNQIKQ 95 (97)
T ss_dssp HT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHh
Confidence 111123444555556555555543
No 27
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=90.33 E-value=7.5 Score=35.50 Aligned_cols=88 Identities=10% Similarity=0.221 Sum_probs=50.8
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-hhHHHHHH
Q 021349 216 VEIQDRHDTAK-EIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQRSNR-KWMCVGII 293 (313)
Q Consensus 216 ~~i~~R~~~i~-~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~r-k~~c~~~~ 293 (313)
..+-.+|+.++ +|-..|..|..-.++=+... +..|..=..-++.+...++.-...|..+.+.-+..+ +.++|+.+
T Consensus 155 e~~l~~~~~~QE~L~~em~~La~~LK~~s~~~---~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~~~~~ 231 (251)
T PF09753_consen 155 EKILQHHRNLQEDLTEEMLSLARQLKENSLAF---SQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWGCWTW 231 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 33344555544 45555555555444443332 344444455577777788888888888877766655 45566666
Q ss_pred HHHHHHHHHHHHH
Q 021349 294 LLLLIILLIVIPI 306 (313)
Q Consensus 294 ~~~ii~~ii~~~i 306 (313)
+++++++++++.+
T Consensus 232 ~~i~~v~~~Fi~m 244 (251)
T PF09753_consen 232 LMIFVVIIVFIMM 244 (251)
T ss_pred HHHHHHHHHHHHH
Confidence 6665555544443
No 28
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.73 E-value=14 Score=32.87 Aligned_cols=75 Identities=8% Similarity=-0.016 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcchhhHHHHHHHHHHHHHHHHHHHhccC
Q 021349 236 HQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDY--QRSNRKWMCVGIILLLLIILLIVIPIATSF 310 (313)
Q Consensus 236 ~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~--qk~~rk~~c~~~~~~~ii~~ii~~~i~~~~ 310 (313)
.+...+|..-+.+-...+..++..-......++.+..++..+..- ..+....+=|++....|+++.+++++++|.
T Consensus 117 ~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~~~GlllGlilp~ 193 (206)
T PRK10884 117 NQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGVAGIGLLLGLLLPH 193 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence 344445555555555666667777677777777777666543222 222222233334444444455555555553
No 29
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=89.49 E-value=13 Score=33.48 Aligned_cols=52 Identities=17% Similarity=0.292 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhc
Q 021349 257 EHHVMNASHYVKDGTKELKTAKDYQRSNRKWMCVGIILLLLIILLIVIPIAT 308 (313)
Q Consensus 257 e~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c~~~~~~~ii~~ii~~~i~~ 308 (313)
-.++..+.+..++..++++++.+.-+++-+++|..+..++.|++++++++++
T Consensus 119 ~~ei~k~r~e~~~ml~evK~~~E~y~k~~k~~~~gi~aml~Vf~LF~lvmt~ 170 (230)
T PF03904_consen 119 QNEIKKVREENKSMLQEVKQSHEKYQKRQKSMYKGIGAMLFVFMLFALVMTI 170 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3345555666777777888887777777888888877776666666665543
No 30
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=89.46 E-value=34 Score=36.79 Aligned_cols=55 Identities=15% Similarity=0.154 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 225 AKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQ 281 (313)
Q Consensus 225 i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q 281 (313)
+..+.+.+..+..-+..++.-+-.+ +...+..-...+..++......++++..|.
T Consensus 359 v~~ik~~l~~~~~~i~~~a~~i~~~--~~~~~s~~~~~~~~~~~~~~~~~~~y~~yR 413 (806)
T PF05478_consen 359 VPPIKRDLDSIGKQIRSQAKQIPNQ--IDSNISDILNNTERSSRSFEDEYEKYDSYR 413 (806)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 4556666666677777777766666 556677767777777777777777666664
No 31
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=88.04 E-value=10 Score=29.04 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=24.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHH
Q 021349 247 EAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQRSNRKWMC 289 (313)
Q Consensus 247 ~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c 289 (313)
.+|-..|....+.......-+..+.+-+.+..+..+.-+.+++
T Consensus 32 ~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~ 74 (92)
T PF03908_consen 32 EESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIF 74 (92)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4555556666666666666666777777555554443333333
No 32
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.79 E-value=32 Score=30.78 Aligned_cols=41 Identities=5% Similarity=0.138 Sum_probs=25.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 021349 246 VEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQRSNRK 286 (313)
Q Consensus 246 V~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk 286 (313)
+.+|+..|-.+-.-+-....-+.=.+.-|.--.+.-+.-+.
T Consensus 152 l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~Dk~ 192 (213)
T KOG3251|consen 152 LVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVREDKI 192 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhHH
Confidence 46777777777777777666666666666555444443333
No 33
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=83.59 E-value=38 Score=31.49 Aligned_cols=89 Identities=15% Similarity=0.216 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHH
Q 021349 213 ETVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQRSNRKWMCVGI 292 (313)
Q Consensus 213 ~~l~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c~~~ 292 (313)
....+|..-++.|.++..--.+|..+..+=+.+|..=...|+++-.|+..|.....+|..+= +..++.+.++.+++
T Consensus 192 er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hq----rrt~k~~~~~Llil 267 (283)
T COG5325 192 ERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQ----RRTKKCRFYLLLIL 267 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHH----hhhccchhhHHHHH
Confidence 34567888889999999999999999999999999999999999999999999999998776 55567888877777
Q ss_pred HHHHHHHHHHHHH
Q 021349 293 ILLLLIILLIVIP 305 (313)
Q Consensus 293 ~~~~ii~~ii~~~ 305 (313)
+++++++++++.+
T Consensus 268 ~vv~lfv~l~~kl 280 (283)
T COG5325 268 LVVLLFVSLIKKL 280 (283)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777776654
No 34
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.14 E-value=16 Score=32.33 Aligned_cols=85 Identities=16% Similarity=0.219 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----chhhHHHHHHHHHHH
Q 021349 223 DTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQRS----NRKWMCVGIILLLLI 298 (313)
Q Consensus 223 ~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~----~rk~~c~~~~~~~ii 298 (313)
..+.++.-.|.|+..++.+==.-|-+-||- ||-=|+.|..-..++...-+.+++..++ +-|..|+++++++.+
T Consensus 125 d~lskvkaqv~evk~vM~eNIekvldRGek---iELLVdKTenl~~~s~~fr~q~r~~~r~mw~~n~kl~~iv~~~~~~~ 201 (217)
T KOG0859|consen 125 SKLAKVKAQVTEVKGVMMENIEKVLDRGEK---IELLVDKTENLRSKSFDFRTQGRKLRRKMWFQNMKLKLIVLGVSISL 201 (217)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCe---EEeeechhhhhhhhhHHHHHHHHHHHHHHHHhccceehhhhhHHHHH
Confidence 345555666666666555444444455543 2333444444444444433344333322 113345555555556
Q ss_pred HHHHHHHHhccC
Q 021349 299 ILLIVIPIATSF 310 (313)
Q Consensus 299 ~~ii~~~i~~~~ 310 (313)
+.||+.+++-++
T Consensus 202 iyiiv~~~CgG~ 213 (217)
T KOG0859|consen 202 IYIIVARRCGGF 213 (217)
T ss_pred HHHHHHHhccCC
Confidence 666666666444
No 35
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=80.07 E-value=5.2 Score=27.39 Aligned_cols=35 Identities=31% Similarity=0.400 Sum_probs=21.4
Q ss_pred HHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhccC
Q 021349 276 TAKDYQRSNRKWMCVGIILLLLIILLIVIPIATSF 310 (313)
Q Consensus 276 kA~~~qk~~rk~~c~~~~~~~ii~~ii~~~i~~~~ 310 (313)
.+.++=++++.-+..++++++++++.++.|++.|+
T Consensus 7 ~~~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p~ 41 (56)
T PF12911_consen 7 DAWRRFRRNKLAVIGLIILLILVLLAIFAPFISPY 41 (56)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34444445555455555556666667778888877
No 36
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=77.29 E-value=2.7 Score=31.73 Aligned_cols=12 Identities=25% Similarity=0.271 Sum_probs=5.9
Q ss_pred HHHHHHhccCCC
Q 021349 301 LIVIPIATSFSS 312 (313)
Q Consensus 301 ii~~~i~~~~~~ 312 (313)
|||+.+++.+.|
T Consensus 37 IiLlImlfqsSS 48 (85)
T PF10717_consen 37 IILLIMLFQSSS 48 (85)
T ss_pred HHHHHHHHhccC
Confidence 334445565544
No 37
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=77.16 E-value=25 Score=25.53 Aligned_cols=46 Identities=26% Similarity=0.414 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Q 021349 249 QGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQRSNRKWMCVGIILLLLI 298 (313)
Q Consensus 249 Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c~~~~~~~ii 298 (313)
..+-++.+|.+.......+.....+|. .=+.+.||.+-+++..+|.
T Consensus 18 ~~~~i~~lE~~~~~~e~~i~~~~~~l~----~I~~n~kW~~r~iiGaiI~ 63 (71)
T PF10779_consen 18 HEERIDKLEKRDAANEKDIKNLNKQLE----KIKSNTKWIWRTIIGAIIT 63 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 344455555555555544444455553 3345556766554444433
No 38
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.11 E-value=65 Score=30.24 Aligned_cols=90 Identities=12% Similarity=0.267 Sum_probs=58.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHH
Q 021349 212 LETVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQRSNRKWMCVG 291 (313)
Q Consensus 212 ~~~l~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c~~ 291 (313)
.....+|.+-.+.|.++..=..+|..|..|=++.|.-=.-.|+++-..++.|...+.+|.. ..+.-++.+-.+.++
T Consensus 214 ~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~----yQk~~~k~~~i~~L~ 289 (305)
T KOG0809|consen 214 REREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAER----YQKRNKKMKVILMLT 289 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHH----HHhcCCceEehHHHH
Confidence 3345566666677777777777777777777777777777777777777777777777653 445556666544444
Q ss_pred HHHHHHHHHHHHHH
Q 021349 292 IILLLLIILLIVIP 305 (313)
Q Consensus 292 ~~~~~ii~~ii~~~ 305 (313)
++|+++++++|+.+
T Consensus 290 l~ii~llvllilk~ 303 (305)
T KOG0809|consen 290 LLIIALLVLLILKK 303 (305)
T ss_pred HHHHHHHHHHHhhc
Confidence 44444555555543
No 39
>PHA02844 putative transmembrane protein; Provisional
Probab=73.35 E-value=4.6 Score=29.79 Aligned_cols=26 Identities=0% Similarity=-0.014 Sum_probs=13.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhcc
Q 021349 284 NRKWMCVGIILLLLIILLIVIPIATS 309 (313)
Q Consensus 284 ~rk~~c~~~~~~~ii~~ii~~~i~~~ 309 (313)
+..|+.++++++.++++++++..+++
T Consensus 45 ~~~~~~~ii~i~~v~~~~~~~flYLK 70 (75)
T PHA02844 45 SSSTKIWILTIIFVVFATFLTFLYLK 70 (75)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555555543
No 40
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=71.46 E-value=1.8e+02 Score=32.71 Aligned_cols=23 Identities=30% Similarity=0.195 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021349 44 LNLFLAEAENVKKEMEEIRDVLG 66 (313)
Q Consensus 44 ~~~f~~~v~~I~~~I~~i~~~i~ 66 (313)
+..++.+++.+..-+........
T Consensus 1424 l~~~~ae~eq~~~~v~ea~~~as 1446 (1758)
T KOG0994|consen 1424 LRSKLAEAEQTLSMVREAKLSAS 1446 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhH
Confidence 33444444444444443333333
No 41
>PF14992 TMCO5: TMCO5 family
Probab=71.44 E-value=89 Score=29.19 Aligned_cols=55 Identities=13% Similarity=0.128 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 021349 214 TVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVK 268 (313)
Q Consensus 214 ~l~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~ 268 (313)
....+.....+|.+++.+...++++=.|=+..+..=.+.+.+||...+...-+.+
T Consensus 121 l~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE~~lLe~e 175 (280)
T PF14992_consen 121 LLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEEEKEMLLLEKE 175 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667778888888888888888888888888777778888886665544433
No 42
>PHA03054 IMV membrane protein; Provisional
Probab=70.36 E-value=5.8 Score=28.97 Aligned_cols=25 Identities=28% Similarity=0.560 Sum_probs=11.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhc
Q 021349 284 NRKWMCVGIILLLLIILLIVIPIAT 308 (313)
Q Consensus 284 ~rk~~c~~~~~~~ii~~ii~~~i~~ 308 (313)
+..|++++++++.++++++++..++
T Consensus 45 ~~~~~~~ii~l~~v~~~~l~~flYL 69 (72)
T PHA03054 45 CWGWYWLIIIFFIVLILLLLIYLYL 69 (72)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445554444444444444444443
No 43
>PHA02819 hypothetical protein; Provisional
Probab=69.88 E-value=5.9 Score=28.94 Aligned_cols=25 Identities=16% Similarity=0.123 Sum_probs=12.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhc
Q 021349 284 NRKWMCVGIILLLLIILLIVIPIAT 308 (313)
Q Consensus 284 ~rk~~c~~~~~~~ii~~ii~~~i~~ 308 (313)
+..|++++++++.++++++++..++
T Consensus 43 ~~~~~~~ii~l~~~~~~~~~~flYL 67 (71)
T PHA02819 43 SFLRYYLIIGLVTIVFVIIFIIFYL 67 (71)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555554444454455544444
No 44
>PHA02650 hypothetical protein; Provisional
Probab=69.48 E-value=5.3 Score=29.85 Aligned_cols=25 Identities=12% Similarity=-0.023 Sum_probs=12.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhc
Q 021349 284 NRKWMCVGIILLLLIILLIVIPIAT 308 (313)
Q Consensus 284 ~rk~~c~~~~~~~ii~~ii~~~i~~ 308 (313)
+..|+++++++++++++++++..++
T Consensus 46 ~~~~~~~ii~i~~v~i~~l~~flYL 70 (81)
T PHA02650 46 WFNGQNFIFLIFSLIIVALFSFFVF 70 (81)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445554544444444455544443
No 45
>PHA02975 hypothetical protein; Provisional
Probab=67.28 E-value=5.6 Score=28.88 Aligned_cols=26 Identities=4% Similarity=0.098 Sum_probs=12.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhc
Q 021349 283 SNRKWMCVGIILLLLIILLIVIPIAT 308 (313)
Q Consensus 283 ~~rk~~c~~~~~~~ii~~ii~~~i~~ 308 (313)
++..|++++++++.++++++++..++
T Consensus 40 ~~~~~~~~ii~i~~v~~~~~~~flYL 65 (69)
T PHA02975 40 KSSLSIILIIFIIFITCIAVFTFLYL 65 (69)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555444444444444443
No 46
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=64.97 E-value=43 Score=23.57 Aligned_cols=45 Identities=24% Similarity=0.436 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 021349 224 TAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVK 268 (313)
Q Consensus 224 ~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~ 268 (313)
+++.++.-+..|-..|.....--..+++.++++|.+++.-..++-
T Consensus 2 ~~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~mv 46 (57)
T PF02346_consen 2 RIKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYMV 46 (57)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 467788888888999999999999999999999999998766653
No 47
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.27 E-value=76 Score=25.66 Aligned_cols=26 Identities=23% Similarity=0.370 Sum_probs=17.9
Q ss_pred HHhcchhhHHHHHHHHHHHHHHHHHH
Q 021349 280 YQRSNRKWMCVGIILLLLIILLIVIP 305 (313)
Q Consensus 280 ~qk~~rk~~c~~~~~~~ii~~ii~~~ 305 (313)
..=+.+-++|++++++++|+++.++.
T Consensus 90 kn~Km~~il~~v~~i~l~iiii~~~~ 115 (116)
T KOG0860|consen 90 KNCKMRIILGLVIIILLVVIIIYIFL 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33457778887777777777776653
No 48
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=62.12 E-value=2.1 Score=36.01 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHhcchh
Q 021349 270 GTKELKTAKDYQRSNRK 286 (313)
Q Consensus 270 g~~~L~kA~~~qk~~rk 286 (313)
|..-|-|=.+.+.+.+|
T Consensus 115 GyDsLLKkKEae~kr~K 131 (159)
T PF06789_consen 115 GYDSLLKKKEAELKRSK 131 (159)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 44455554444443333
No 49
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=61.53 E-value=55 Score=23.65 Aligned_cols=49 Identities=14% Similarity=0.201 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 021349 223 DTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGT 271 (313)
Q Consensus 223 ~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~ 271 (313)
..|..||..+.-.-....+|+..|..|...||+....+..-...+....
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567777788888888888888899999999999888888777766543
No 50
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=61.12 E-value=6.1 Score=29.82 Aligned_cols=29 Identities=24% Similarity=0.533 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHH
Q 021349 270 GTKELKTAKDYQRSNRKWMCVGIILLLLI 298 (313)
Q Consensus 270 g~~~L~kA~~~qk~~rk~~c~~~~~~~ii 298 (313)
..-+.+.|+++.+++|+|-.+.+++.+++
T Consensus 49 ~~Gd~~~A~~aS~~Ak~~~~ia~~~g~~~ 77 (82)
T PF04505_consen 49 AAGDYEGARRASRKAKKWSIIAIIIGIVI 77 (82)
T ss_pred HCCCHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34467788888887777766555554443
No 51
>PF10496 Syntaxin-18_N: SNARE-complex protein Syntaxin-18 N-terminus ; InterPro: IPR019529 This is the conserved N-terminal of Syntaxin-18. Syntaxin-18 is found in the SNARE complex of the endoplasmic reticulum and functions in the trafficking between the ER intermediate compartment and the cis-Golgi vesicle. In particular, the N-terminal region is important for the formation of ER aggregates []. More specifically, syntaxin-18 is involved in endoplasmic reticulum-mediated phagocytosis, presumably by regulating the specific and direct fusion of the ER with the plasma or phagosomal membranes [].
Probab=60.89 E-value=23 Score=26.68 Aligned_cols=64 Identities=19% Similarity=0.285 Sum_probs=42.6
Q ss_pred hhhhhhchhhhhhhhhhhhcCCCCCCccccccCCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 5 MTKSFTSYVDLKKEAMKDLEAGPDPDLEMTTSTNTMDQNLNLFLAEAENVKKEMEEIRDVLGRLQEAN 72 (313)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~ 72 (313)
.|.-|..||.....+-..... .| ..-.........-..|+.++.+|...|..|...+.+++..+
T Consensus 3 lT~lF~~~V~~~~~~~~~~~~--~~--~~~~~~~~~~~~~d~F~keA~~i~~~I~~L~~fL~~iR~~Y 66 (87)
T PF10496_consen 3 LTPLFKACVKIIRTENKASGK--AP--SDSSKIRPKTKPKDEFLKEAYRILSHITSLRKFLKSIRKAY 66 (87)
T ss_pred ccHHHHHHHHHHHhhcccccc--cc--ccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366788888765543333322 11 11122223445566899999999999999999999998865
No 52
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=60.78 E-value=12 Score=27.99 Aligned_cols=20 Identities=10% Similarity=0.224 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021349 252 QMDDIEHHVMNASHYVKDGT 271 (313)
Q Consensus 252 ~id~Ie~nv~~a~~~v~~g~ 271 (313)
.++.||.+............
T Consensus 10 ~L~eiEr~L~~~DP~fa~~l 29 (82)
T PF11239_consen 10 RLEEIERQLRADDPRFAARL 29 (82)
T ss_pred HHHHHHHHHHhcCcHHHHHh
Confidence 78888888877655554443
No 53
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=59.04 E-value=15 Score=37.05 Aligned_cols=34 Identities=12% Similarity=0.184 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 021349 252 QMDDIEHHVMNASHYVKDGTKELKTAKDYQRSNRK 286 (313)
Q Consensus 252 ~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk 286 (313)
.+| |..++.++...++++...|.++.+.-.+..+
T Consensus 433 PlD-IS~eL~~vn~sL~~A~~~L~~Sn~iL~~v~~ 466 (490)
T PF00523_consen 433 PLD-ISSELGQVNNSLNNAKDLLDKSNQILDSVNP 466 (490)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-
T ss_pred ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345 5555666666666666666666655554443
No 54
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=58.94 E-value=34 Score=24.26 Aligned_cols=17 Identities=12% Similarity=0.212 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhcchhhH
Q 021349 272 KELKTAKDYQRSNRKWM 288 (313)
Q Consensus 272 ~~L~kA~~~qk~~rk~~ 288 (313)
+...+.++..++.+..+
T Consensus 26 ~~~~k~qk~~~~~~~i~ 42 (59)
T PF09889_consen 26 EEYRKRQKRMRKTQYIF 42 (59)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555554433
No 55
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=58.24 E-value=30 Score=25.86 Aligned_cols=26 Identities=38% Similarity=0.604 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccCC
Q 021349 286 KWMCVGIILLLLIILLIVIPIATSFS 311 (313)
Q Consensus 286 k~~c~~~~~~~ii~~ii~~~i~~~~~ 311 (313)
|.+|=+++++++++.++++|+.++|-
T Consensus 46 R~~WD~~m~~~~~~~~~~iP~~isF~ 71 (77)
T PF08412_consen 46 RFYWDLIMLILLLYNLIIIPFRISFF 71 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhheEe
Confidence 44555666667777788899888773
No 56
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=56.94 E-value=39 Score=28.93 Aligned_cols=28 Identities=18% Similarity=0.387 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhcchhhH-HHHHHHHHHH
Q 021349 271 TKELKTAKDYQRSNRKWM-CVGIILLLLI 298 (313)
Q Consensus 271 ~~~L~kA~~~qk~~rk~~-c~~~~~~~ii 298 (313)
..++..|++-.+++.|.+ +.++++.+.+
T Consensus 137 ~~~~~~a~~~~~~~~Klyr~LGvl~G~~l 165 (170)
T PF09548_consen 137 EQQLEEAREEAKKKGKLYRSLGVLGGLFL 165 (170)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 345566666666666644 4454444433
No 57
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.67 E-value=73 Score=29.03 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=9.3
Q ss_pred HHHhhHHHHHHHHHHHH
Q 021349 246 VEAQGEQMDDIEHHVMN 262 (313)
Q Consensus 246 V~~Qge~id~Ie~nv~~ 262 (313)
+.+|.+.+|.|+..+..
T Consensus 147 ~~eQDe~Ld~ls~ti~r 163 (235)
T KOG3202|consen 147 LQEQDEGLDGLSATVQR 163 (235)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555556555555443
No 58
>PRK13865 type IV secretion system protein VirB8; Provisional
Probab=56.23 E-value=44 Score=30.27 Aligned_cols=25 Identities=12% Similarity=0.069 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCC
Q 021349 287 WMCVGIILLLLIILLIVIPIATSFS 311 (313)
Q Consensus 287 ~~c~~~~~~~ii~~ii~~~i~~~~~ 311 (313)
|++.++.+++++++++.+..++|++
T Consensus 41 w~va~~~~~~~~~~~~Av~~l~PLK 65 (229)
T PRK13865 41 AAVAGIAVAGNVAQAFAIATMVPLE 65 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccC
Confidence 5444444555555555566677765
No 59
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=56.14 E-value=40 Score=28.95 Aligned_cols=29 Identities=31% Similarity=0.459 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhcchhh-HHHHHHHHHHHH
Q 021349 271 TKELKTAKDYQRSNRKW-MCVGIILLLLII 299 (313)
Q Consensus 271 ~~~L~kA~~~qk~~rk~-~c~~~~~~~ii~ 299 (313)
..++..|++.++++.|+ .|.++++.+.++
T Consensus 138 ~~~~~~a~~~~~k~~Kmy~~LGvl~Gl~lv 167 (171)
T PRK08307 138 EREEEEAEEEQKKNEKMYKYLGFLAGLLIV 167 (171)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 45666777777777664 455555554443
No 60
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=55.94 E-value=17 Score=26.79 Aligned_cols=6 Identities=0% Similarity=-0.180 Sum_probs=2.3
Q ss_pred HHHHhc
Q 021349 303 VIPIAT 308 (313)
Q Consensus 303 ~~~i~~ 308 (313)
++.+++
T Consensus 64 l~flYL 69 (72)
T PF12575_consen 64 LTFLYL 69 (72)
T ss_pred HHHHHh
Confidence 333433
No 61
>PRK04325 hypothetical protein; Provisional
Probab=55.86 E-value=80 Score=23.25 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 021349 225 AKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKD 269 (313)
Q Consensus 225 i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~ 269 (313)
|..||..+.-.-....+|+..|..|...|++....+..-.+.+..
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888888889999999999988887777666654
No 62
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=55.86 E-value=2.1e+02 Score=28.05 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 021349 221 RHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHV 260 (313)
Q Consensus 221 R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv 260 (313)
|++.+.+.-....||+ -++++.|=+++..|=.++.|.-
T Consensus 307 R~erLEEqLNdlteLq--QnEi~nLKqElasmeervaYQs 344 (455)
T KOG3850|consen 307 RYERLEEQLNDLTELQ--QNEIANLKQELASMEERVAYQS 344 (455)
T ss_pred HHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555 3688888889998888888763
No 63
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=55.66 E-value=42 Score=28.83 Aligned_cols=29 Identities=31% Similarity=0.583 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhcchhhH-HHHHHHHHHHH
Q 021349 271 TKELKTAKDYQRSNRKWM-CVGIILLLLII 299 (313)
Q Consensus 271 ~~~L~kA~~~qk~~rk~~-c~~~~~~~ii~ 299 (313)
..++..|++.++++.|++ ++++++.+.++
T Consensus 137 ~~~~~~a~~~~~k~~Kmy~~LGvl~Gl~lv 166 (170)
T TIGR02833 137 ERQLTEAEDEQKKNEKMYRYLGVLVGLMIV 166 (170)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 445667777777777654 55555554443
No 64
>PLN03160 uncharacterized protein; Provisional
Probab=53.78 E-value=6.3 Score=35.38 Aligned_cols=27 Identities=7% Similarity=0.070 Sum_probs=15.3
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHhc
Q 021349 282 RSNRKWMCVGIILLLLIILLIVIPIAT 308 (313)
Q Consensus 282 k~~rk~~c~~~~~~~ii~~ii~~~i~~ 308 (313)
++.|+++||+.+++++++++.++.+++
T Consensus 31 ~~r~~~~~c~~~~~a~~l~l~~v~~~l 57 (219)
T PLN03160 31 TRRRNCIKCCGCITATLLILATTILVL 57 (219)
T ss_pred cccccceEEHHHHHHHHHHHHHHHHhe
Confidence 345567778777766655544433333
No 65
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=53.77 E-value=1.7e+02 Score=28.35 Aligned_cols=38 Identities=18% Similarity=0.327 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 021349 228 IEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASH 265 (313)
Q Consensus 228 ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~ 265 (313)
+...+......|-++..-...-||.=-+++.-+....+
T Consensus 111 ls~al~~~~~~fp~~~~~li~~GE~sG~L~~~l~~la~ 148 (399)
T PRK10573 111 FSEALLQWPQVFPPLYQALIATGELTGKLDECCFQLAR 148 (399)
T ss_pred HHHHHHhCcCcCCHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 44455554445555444334445544455554444444
No 66
>PHA02692 hypothetical protein; Provisional
Probab=53.04 E-value=18 Score=26.49 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=9.9
Q ss_pred hhhHHHHHH-HHHHHHHHHHHHHhc
Q 021349 285 RKWMCVGII-LLLLIILLIVIPIAT 308 (313)
Q Consensus 285 rk~~c~~~~-~~~ii~~ii~~~i~~ 308 (313)
..|+.++++ +++++++++++..++
T Consensus 43 ~~~~~~ii~~~~~~~~~vll~flYL 67 (70)
T PHA02692 43 VPWTTVFLIGLIAAAIGVLLCFHYL 67 (70)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433 443444444444433
No 67
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=52.96 E-value=72 Score=22.61 Aligned_cols=14 Identities=21% Similarity=0.185 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHH
Q 021349 268 KDGTKELKTAKDYQ 281 (313)
Q Consensus 268 ~~g~~~L~kA~~~q 281 (313)
|.|..-|..--++|
T Consensus 9 ETA~~FL~RvGr~q 22 (60)
T PF06072_consen 9 ETATEFLRRVGRQQ 22 (60)
T ss_pred ccHHHHHHHHhHHH
Confidence 34555555555555
No 68
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=52.95 E-value=1.8e+02 Score=26.36 Aligned_cols=28 Identities=11% Similarity=0.133 Sum_probs=11.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 247 EAQGEQMDDIEHHVMNASHYVKDGTKEL 274 (313)
Q Consensus 247 ~~Qge~id~Ie~nv~~a~~~v~~g~~~L 274 (313)
.+-..++-.-+.-++............+
T Consensus 179 keDnQvl~~~~k~~D~N~~~L~~~Serv 206 (244)
T KOG2678|consen 179 KEDNQVLGAAEKGIDVNSQGLMDVSERV 206 (244)
T ss_pred HhhHHHHHHHHHHHhHHHHHHHhhhHHH
Confidence 3333444444444444444444444444
No 69
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=52.55 E-value=79 Score=22.18 Aligned_cols=54 Identities=13% Similarity=0.092 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 225 AKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAK 278 (313)
Q Consensus 225 i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 278 (313)
|..-...+.+..++-.+...-...|++.|.++...+..+..++..++.-|.+-.
T Consensus 10 L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~ 63 (66)
T PF12352_consen 10 LQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRIS 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 444555666667777777788899999999999999999999999998886543
No 70
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=50.93 E-value=72 Score=21.28 Aligned_cols=55 Identities=11% Similarity=0.167 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021349 228 IEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQR 282 (313)
Q Consensus 228 ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk 282 (313)
-.+.+..|.....++..|..+=|.+|..=..-++....++..+...+..|.+.-+
T Consensus 4 ~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ 58 (60)
T cd00193 4 RDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLK 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777777777777777777777777777777788777777777765543
No 71
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.57 E-value=2.2e+02 Score=26.77 Aligned_cols=94 Identities=7% Similarity=0.162 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----hhhHHH
Q 021349 215 VVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQRSN----RKWMCV 290 (313)
Q Consensus 215 l~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~----rk~~c~ 290 (313)
+..+++-..-+..=.++++.+-.-..+|+.+..+=..||-.=+.-+....++|..+...+..|..--.+. .+--|+
T Consensus 212 m~ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwL 291 (311)
T KOG0812|consen 212 MALLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWL 291 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHH
Confidence 4445555566666677777787778888888888888888888888888888888888888775443332 344566
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 021349 291 GIILLLLIILLIVIPIAT 308 (313)
Q Consensus 291 ~~~~~~ii~~ii~~~i~~ 308 (313)
++=++.|+++++++.++|
T Consensus 292 mvkiF~i~ivFflvfvlf 309 (311)
T KOG0812|consen 292 MVKIFGILIVFFLVFVLF 309 (311)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 666666666666665554
No 72
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=50.51 E-value=17 Score=32.40 Aligned_cols=17 Identities=29% Similarity=0.663 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHH
Q 021349 287 WMCVGIILLLLIILLIV 303 (313)
Q Consensus 287 ~~c~~~~~~~ii~~ii~ 303 (313)
.+|++||.|+++|+.+|
T Consensus 131 LIClIIIAVLfLICT~L 147 (227)
T PF05399_consen 131 LICLIIIAVLFLICTLL 147 (227)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666666555555544
No 73
>PRK14762 membrane protein; Provisional
Probab=50.08 E-value=27 Score=20.25 Aligned_cols=7 Identities=57% Similarity=0.638 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 021349 298 IILLIVI 304 (313)
Q Consensus 298 i~~ii~~ 304 (313)
|.++++.
T Consensus 14 igllvvt 20 (27)
T PRK14762 14 IGLLVVT 20 (27)
T ss_pred HHHHHHH
Confidence 3333333
No 74
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=48.60 E-value=23 Score=26.97 Aligned_cols=9 Identities=11% Similarity=0.121 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 021349 272 KELKTAKDY 280 (313)
Q Consensus 272 ~~L~kA~~~ 280 (313)
.+|.+-...
T Consensus 20 DQL~qlVsr 28 (84)
T PF06143_consen 20 DQLEQLVSR 28 (84)
T ss_pred HHHHHHHHh
Confidence 345444433
No 75
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=48.49 E-value=29 Score=25.68 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 021349 289 CVGIILLLLIILLIVIPIAT 308 (313)
Q Consensus 289 c~~~~~~~ii~~ii~~~i~~ 308 (313)
++.+++.+++++++++.+++
T Consensus 3 i~~~~~g~~~ll~~v~~~~~ 22 (75)
T PF14575_consen 3 IASIIVGVLLLLVLVIIVIV 22 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred EehHHHHHHHHHHhheeEEE
Confidence 33333333333333333333
No 76
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=48.40 E-value=27 Score=26.47 Aligned_cols=19 Identities=37% Similarity=0.585 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021349 288 MCVGIILLLLIILLIVIPI 306 (313)
Q Consensus 288 ~c~~~~~~~ii~~ii~~~i 306 (313)
+..++++++||+++|+++=
T Consensus 27 lMtILivLVIIiLlImlfq 45 (85)
T PF10717_consen 27 LMTILIVLVIIILLIMLFQ 45 (85)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344445555555555543
No 77
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=47.11 E-value=1.2e+02 Score=27.02 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=36.0
Q ss_pred chHHhHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 021349 195 SEEFLTHAIQEHGRGKVLETVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEH 258 (313)
Q Consensus 195 ~~~~~q~~l~~~~~~q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~ 258 (313)
++.||+. +.+.++..+..+|.+-+.=|.+|..++..|..|.+--.+|..|+..=..|.+.|+.
T Consensus 105 se~YWk~-lAE~RR~AL~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~~la~~ie~ 167 (200)
T PF07412_consen 105 SENYWKE-LAEERRKALEEALEENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQYLAEVIER 167 (200)
T ss_dssp CHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788875 45555544556666666666666666666666555555555554444444444443
No 78
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.07 E-value=52 Score=29.16 Aligned_cols=65 Identities=17% Similarity=0.231 Sum_probs=29.9
Q ss_pred HHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcch---hhHHH----HHHHHHHHHHHHHHHHhccCC
Q 021349 247 EAQGEQMDDIEHHVMNAS---HYVKDGTKELKTAKDYQRSNR---KWMCV----GIILLLLIILLIVIPIATSFS 311 (313)
Q Consensus 247 ~~Qge~id~Ie~nv~~a~---~~v~~g~~~L~kA~~~qk~~r---k~~c~----~~~~~~ii~~ii~~~i~~~~~ 311 (313)
+--|-|+++||.=.+.-. --|.+...--.++...++.+| +.+|+ +-+++++++++++..|+.+.|
T Consensus 136 evk~vM~eNIekvldRGekiELLVdKTenl~~~s~~fr~q~r~~~r~mw~~n~kl~~iv~~~~~~~iyiiv~~~C 210 (217)
T KOG0859|consen 136 EVKGVMMENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQGRKLRRKMWFQNMKLKLIVLGVSISLIYIIVARRC 210 (217)
T ss_pred HHHHHHHHHHHHHHhccCeEEeeechhhhhhhhhHHHHHHHHHHHHHHHHhccceehhhhhHHHHHHHHHHHHhc
Confidence 456788888886554432 123333333334444444443 33433 223333333344444555444
No 79
>PRK00295 hypothetical protein; Provisional
Probab=47.05 E-value=1.1e+02 Score=22.16 Aligned_cols=46 Identities=7% Similarity=0.079 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 021349 224 TAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKD 269 (313)
Q Consensus 224 ~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~ 269 (313)
.|..||..+.-.-....+|+..|..|...||.....+..-...+..
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778888888888888888899999999999888887776665554
No 80
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=46.83 E-value=64 Score=22.87 Aligned_cols=9 Identities=0% Similarity=-0.141 Sum_probs=4.4
Q ss_pred HHHHHhccC
Q 021349 302 IVIPIATSF 310 (313)
Q Consensus 302 i~~~i~~~~ 310 (313)
.+++.++.|
T Consensus 50 ~~lG~~~~~ 58 (60)
T PF06072_consen 50 GGLGALVAW 58 (60)
T ss_pred HHHHHHhhc
Confidence 345555544
No 81
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=46.15 E-value=32 Score=24.32 Aligned_cols=9 Identities=33% Similarity=0.508 Sum_probs=3.9
Q ss_pred HHHHHHHHh
Q 021349 274 LKTAKDYQR 282 (313)
Q Consensus 274 L~kA~~~qk 282 (313)
|.+-++.+|
T Consensus 33 l~ker~R~r 41 (64)
T COG4068 33 LNKERKRQR 41 (64)
T ss_pred HHHHHHHHH
Confidence 444444443
No 82
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=45.83 E-value=4.2e+02 Score=28.57 Aligned_cols=44 Identities=7% Similarity=0.216 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHH
Q 021349 230 KSLLELHQIFLDMAVMVEAQGEQMDD-IEHHVMNASHYVKDGTKE 273 (313)
Q Consensus 230 ~~i~el~~lf~~l~~lV~~Qge~id~-Ie~nv~~a~~~v~~g~~~ 273 (313)
..+.++.....+++.-+..+.+.+-. ++.++......++.....
T Consensus 357 ~~v~~ik~~l~~~~~~i~~~a~~i~~~~~~~~s~~~~~~~~~~~~ 401 (806)
T PF05478_consen 357 DVVPPIKRDLDSIGKQIRSQAKQIPNQIDSNISDILNNTERSSRS 401 (806)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhc
Confidence 34445566666666666666666554 445555555555554333
No 83
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=44.74 E-value=1.1e+02 Score=22.85 Aligned_cols=60 Identities=8% Similarity=0.013 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 93 KDVVTVLKRARNIKSHLEDMDRANAANKRLSGCKEGTPIYRTRIAVTNGLRKKLKELMMEFQG 155 (313)
Q Consensus 93 ~l~~ei~~~~~~ik~~Lk~l~~~~~~~~~~~~~~~~s~~~rir~~~~~~L~~~f~~~~~~fq~ 155 (313)
....++..+...|+.....+...+...+.... .........+......+.+..+..+|+.
T Consensus 42 ~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~---~~~~~~~~~~~~ri~~nq~~~L~~kf~~ 101 (103)
T PF00804_consen 42 ELKRELDELTDEIKQLFQKIKKRLKQLSKDNE---DSEGEEPSSNEVRIRKNQVQALSKKFQE 101 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCTT--SHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhcccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666655433211000 0011123444556666666666666664
No 84
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=44.72 E-value=2.4e+02 Score=25.53 Aligned_cols=55 Identities=18% Similarity=0.235 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcch
Q 021349 228 IEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTA----KDYQRSNR 285 (313)
Q Consensus 228 ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA----~~~qk~~r 285 (313)
|-.++.-|..-|+..+. -=+..|+.=..-+..+.--+.....-|..+ .+|.++.+
T Consensus 156 Laesll~LArslKtnal---AfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~ 214 (244)
T KOG2678|consen 156 LAESLLKLARSLKTNAL---AFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKL 214 (244)
T ss_pred HHHHHHHHHHHHHHhHH---HHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhh
Confidence 33444444444443332 234455444444555555555555555544 44444443
No 85
>PRK00736 hypothetical protein; Provisional
Probab=44.60 E-value=1.2e+02 Score=21.94 Aligned_cols=46 Identities=9% Similarity=0.133 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 021349 224 TAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKD 269 (313)
Q Consensus 224 ~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~ 269 (313)
.|..||..+.-.-....+|+..|..|...||.....+..-.+.+..
T Consensus 6 Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777788888888888888888999999998888887777666644
No 86
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=44.45 E-value=26 Score=29.82 Aligned_cols=16 Identities=13% Similarity=0.326 Sum_probs=9.3
Q ss_pred HHHHHHHHHhcchhhH
Q 021349 273 ELKTAKDYQRSNRKWM 288 (313)
Q Consensus 273 ~L~kA~~~qk~~rk~~ 288 (313)
.-....++||..||++
T Consensus 17 ~y~as~~r~k~~~R~i 32 (161)
T PHA02673 17 NYVASVKRQKAIRRYI 32 (161)
T ss_pred chhhHHHHHHHHHHHH
Confidence 3344456676667654
No 87
>COG3736 VirB8 Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion]
Probab=44.23 E-value=66 Score=29.35 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhcchh-hHHHHHHHHHHHHHHHHHHHhccCC
Q 021349 270 GTKELKTAKDYQRSNRK-WMCVGIILLLLIILLIVIPIATSFS 311 (313)
Q Consensus 270 g~~~L~kA~~~qk~~rk-~~c~~~~~~~ii~~ii~~~i~~~~~ 311 (313)
+.=+..+..+.-|+.+- |+.++++.++-++++|.+.+++|.+
T Consensus 26 ~~~~~~r~~~~~r~r~~~~~va~~~~~l~v~~~~~Ia~llPLK 68 (239)
T COG3736 26 RNWEEDRVIKLERSRRLAWRVAILFTLLAVAAVIAIAILLPLK 68 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 33333344444444432 3333333444444555566666653
No 88
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=43.65 E-value=1.5e+02 Score=22.99 Aligned_cols=42 Identities=5% Similarity=-0.014 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 021349 223 DTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNAS 264 (313)
Q Consensus 223 ~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~ 264 (313)
..|.+||..-..+..=+.++-.=++.|..+.+..+.+++.-.
T Consensus 11 ~Ri~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~ 52 (98)
T PF11166_consen 11 WRIRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEIN 52 (98)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHH
Confidence 446677777666666666666667888888888888887743
No 89
>PRK02793 phi X174 lysis protein; Provisional
Probab=43.61 E-value=1.3e+02 Score=22.03 Aligned_cols=47 Identities=19% Similarity=0.211 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 021349 223 DTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKD 269 (313)
Q Consensus 223 ~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~ 269 (313)
..|..||..+.-.-....+|+..|..|...|++....+..-.+.+..
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777777788888888889998888888777776665544
No 90
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=43.15 E-value=1.4e+02 Score=22.26 Aligned_cols=50 Identities=12% Similarity=0.220 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHHHHHHHH
Q 021349 52 ENVKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRAR 103 (313)
Q Consensus 52 ~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~ei~~~~~ 103 (313)
-.|+.+|..+..++..|+..-+.... . ..+..++..+++.+...+..+.+
T Consensus 7 l~Ir~dIk~vd~KVdaLq~~V~~l~~-~-~~~v~~l~~klDa~~~~l~~l~~ 56 (75)
T PF05531_consen 7 LVIRQDIKAVDDKVDALQTQVDDLES-N-LPDVTELNKKLDAQSAQLTTLNT 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-c-CCchHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666666665543211 1 12334566777666655554444
No 91
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=42.60 E-value=2.4e+02 Score=24.93 Aligned_cols=71 Identities=13% Similarity=0.235 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhh-hhc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 44 LNLFLAEAENVKK---EMEEIRDVLGRLQEANEQS-KSL--HKPEALKLLRHKINKDVVTVLKRARNIKSHLEDMDR 114 (313)
Q Consensus 44 ~~~f~~~v~~I~~---~I~~i~~~i~~L~~l~~~~-~~~--~~~~~~~~l~~~i~~l~~ei~~~~~~ik~~Lk~l~~ 114 (313)
...+++..+.+.. .+......+..|....... ..+ .+..+...+....+.....+.+.-..++..-+.|..
T Consensus 17 ~e~~~~~le~a~~~Ek~~~~~~k~L~~lE~~~q~lY~~ii~~~~~d~~~v~~~~~~a~~nv~~R~k~l~~Ek~ai~~ 93 (204)
T PF10368_consen 17 EEQLYDQLEKAVKQEKPFKEQQKKLNELEKKEQELYEQIIQLGKDDNDEVKKLSDEALKNVDEREKELKKEKEAIEK 93 (204)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTGG---G-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555544444 4444444444444443321 111 112344455666666666666555555544333433
No 92
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=41.60 E-value=18 Score=30.53 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=20.6
Q ss_pred HHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHh
Q 021349 275 KTAKDYQRSNRKWMCVGIILLLLIILLIVIPIA 307 (313)
Q Consensus 275 ~kA~~~qk~~rk~~c~~~~~~~ii~~ii~~~i~ 307 (313)
+.|...+.+.-|..+++++.+.+++++|++||+
T Consensus 123 KEae~kr~K~Cki~~Li~~~vc~~ilVivVpi~ 155 (159)
T PF06789_consen 123 KEAELKRSKVCKIFALIVLAVCAVILVIVVPIC 155 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHheEEEEEEEE
Confidence 345556667777766666666555566666665
No 93
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=41.12 E-value=25 Score=25.96 Aligned_cols=10 Identities=30% Similarity=0.810 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 021349 297 LIILLIVIPI 306 (313)
Q Consensus 297 ii~~ii~~~i 306 (313)
++++++++.+
T Consensus 55 ii~v~ii~~l 64 (72)
T PF12575_consen 55 IIFVLIIVLL 64 (72)
T ss_pred HHHHHHHHHH
Confidence 3333444433
No 94
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=40.92 E-value=3.7e+02 Score=26.52 Aligned_cols=77 Identities=13% Similarity=0.195 Sum_probs=46.4
Q ss_pred CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 38 NTMDQNLNLFLAEAENVKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRARNIKSHLEDMDRA 115 (313)
Q Consensus 38 ~~~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~ei~~~~~~ik~~Lk~l~~~ 115 (313)
.+....+..++.++.+++.....+...++.|+....+-.... .....+.+-+.+.+-.+++.+..-=+..|-.|+.+
T Consensus 208 ~~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~-~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqe 284 (395)
T PF10267_consen 208 SQQNLGLQKILEELREIKESQSRLEESIEKLKEQYQREYQFI-LEALQEERYRYERLEEQLNDLTELHQNEIYNLKQE 284 (395)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888999999999999999999999987443221111 12233444444444444444444444444444443
No 95
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=40.85 E-value=3.4e+02 Score=26.18 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 021349 238 IFLDMAVMVEAQGEQMDDIEHHVMNASHYVK 268 (313)
Q Consensus 238 lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~ 268 (313)
+|-++..-....||.-.+++.-+..+.+..+
T Consensus 325 ~fp~~~~~mi~~GE~sG~L~~~L~~~a~~~~ 355 (399)
T TIGR02120 325 LFPPLLVHMIASGEKSGQLETMLERAADNQE 355 (399)
T ss_pred CCCHHHHHHHHHHhhhccHHHHHHHHHHHHH
Confidence 5555555556667776667666666555544
No 96
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=40.78 E-value=23 Score=35.80 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021349 255 DIEHHVMNASHYVKDGTKELKTA 277 (313)
Q Consensus 255 ~Ie~nv~~a~~~v~~g~~~L~kA 277 (313)
.+...++.|+++++++++-|.+.
T Consensus 442 ~vn~sL~~A~~~L~~Sn~iL~~v 464 (490)
T PF00523_consen 442 QVNNSLNNAKDLLDKSNQILDSV 464 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444555555555555433
No 97
>PF15605 Toxin_52: Putative toxin 52
Probab=39.78 E-value=1.9e+02 Score=22.89 Aligned_cols=72 Identities=14% Similarity=0.250 Sum_probs=43.0
Q ss_pred hhhhhhcCCCCCCccccccCCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHH
Q 021349 18 EAMKDLEAGPDPDLEMTTSTNTMDQNLNLFLAEAENVKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVT 97 (313)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~e 97 (313)
++-+|+.|-|-| .++ -.+++.+++++....-+......|... +.+|.-....+.-+...-.+
T Consensus 28 gt~Rdl~G~pVp---------Kp~---GgywdHlqEm~da~~GL~n~~~~le~~------L~np~l~~~~r~~lq~~l~e 89 (103)
T PF15605_consen 28 GTLRDLQGNPVP---------KPD---GGYWDHLQEMQDAYRGLVNRKRTLEGS------LKNPNLSGRTRELLQSKLNE 89 (103)
T ss_pred HHHHHHcCCccc---------CCC---CCccHHHHHHHHHHHHHHHHHHHHHHh------cCCCCCchHHHHHHHHHHHH
Confidence 567899988855 222 357899999988888888777777663 34444333333334333344
Q ss_pred HHHHHHHHHH
Q 021349 98 VLKRARNIKS 107 (313)
Q Consensus 98 i~~~~~~ik~ 107 (313)
.+..+..|..
T Consensus 90 a~~~l~kiE~ 99 (103)
T PF15605_consen 90 ANNYLDKIED 99 (103)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 98
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.27 E-value=79 Score=29.47 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 232 LLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELK 275 (313)
Q Consensus 232 i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~ 275 (313)
+.+....-..-..+..+||+.|++||.++.........|...|.
T Consensus 88 ~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~ 131 (273)
T KOG3065|consen 88 AEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLT 131 (273)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHH
Confidence 33444445566677789999999999999998888888777764
No 99
>PRK02119 hypothetical protein; Provisional
Probab=39.06 E-value=1.5e+02 Score=21.68 Aligned_cols=47 Identities=13% Similarity=0.187 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 021349 223 DTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKD 269 (313)
Q Consensus 223 ~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~ 269 (313)
..|..||..+.-.-....+|+..|..|...||+....+..-...+..
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55777777888888888888888999999998888887776665544
No 100
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=38.69 E-value=2e+02 Score=22.75 Aligned_cols=46 Identities=11% Similarity=0.177 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 021349 222 HDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYV 267 (313)
Q Consensus 222 ~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v 267 (313)
-+.|..+.+.+.-..+-...+..-+..||+.|+.|...+.......
T Consensus 52 geqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRL 97 (102)
T PF01519_consen 52 GEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRL 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666667777788888888887766554433
No 101
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.52 E-value=5.4e+02 Score=27.83 Aligned_cols=27 Identities=11% Similarity=0.208 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 90 KINKDVVTVLKRARNIKSHLEDMDRAN 116 (313)
Q Consensus 90 ~i~~l~~ei~~~~~~ik~~Lk~l~~~~ 116 (313)
.++.....=.-..+.|+.+++.++++.
T Consensus 532 ~L~aa~~~ke~irq~ikdqldelskE~ 558 (1118)
T KOG1029|consen 532 ELEAARRKKELIRQAIKDQLDELSKET 558 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443333344556777777776654
No 102
>PHA02675 ORF104 fusion protein; Provisional
Probab=38.50 E-value=1.8e+02 Score=22.15 Aligned_cols=40 Identities=18% Similarity=0.331 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 021349 229 EKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVK 268 (313)
Q Consensus 229 e~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~ 268 (313)
+.-+..|-+.|..+......=++.|+|.|.+.+....++-
T Consensus 36 e~RL~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~Ml 75 (90)
T PHA02675 36 EERLVSLLDSYKTITDCCRETGARLDRLERHLETLREALL 75 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445577888888888999999999999888665543
No 103
>PHA02819 hypothetical protein; Provisional
Probab=38.45 E-value=28 Score=25.45 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=19.6
Q ss_pred HHHhcchhhHHHHHHHHHHHHHHHHHHHh
Q 021349 279 DYQRSNRKWMCVGIILLLLIILLIVIPIA 307 (313)
Q Consensus 279 ~~qk~~rk~~c~~~~~~~ii~~ii~~~i~ 307 (313)
.+.++++++.-+.+++++++++++++.++
T Consensus 35 s~~~~~~~~~~~~~~ii~l~~~~~~~~~~ 63 (71)
T PHA02819 35 NYNKKTKKSFLRYYLIIGLVTIVFVIIFI 63 (71)
T ss_pred CCcccccCChhHHHHHHHHHHHHHHHHHH
Confidence 35556677888888888866666655544
No 104
>PHA03240 envelope glycoprotein M; Provisional
Probab=38.07 E-value=30 Score=31.02 Aligned_cols=18 Identities=33% Similarity=0.969 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 021349 286 KWMCVGIILLLLIILLIV 303 (313)
Q Consensus 286 k~~c~~~~~~~ii~~ii~ 303 (313)
-|+++++++++|||++.+
T Consensus 214 ~WIiilIIiIiIIIL~cf 231 (258)
T PHA03240 214 AWIFIAIIIIIVIILFFF 231 (258)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 466666666666666654
No 105
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.26 E-value=1.1e+02 Score=27.32 Aligned_cols=50 Identities=12% Similarity=0.207 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhHHH-HHHHHHHHHHHHHHHHhc
Q 021349 259 HVMNASHYVKDGTKELKTAKDYQRSNRKWMCV-GIILLLLIILLIVIPIAT 308 (313)
Q Consensus 259 nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c~-~~~~~~ii~~ii~~~i~~ 308 (313)
.++.|.+..-....+|.++.+.-+...+..|- .+++.+||++.+++.+++
T Consensus 164 ~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~i 214 (220)
T KOG1666|consen 164 QLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLI 214 (220)
T ss_pred HHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666677777777766665443343 444444454444444433
No 106
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=36.82 E-value=3.8e+02 Score=25.79 Aligned_cols=41 Identities=15% Similarity=0.245 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 021349 228 IEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVK 268 (313)
Q Consensus 228 ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~ 268 (313)
+...+......|-++..-...-||.=-+++..+....++.+
T Consensus 113 ls~al~~~~~~fp~~~~~~i~~GE~sG~L~~~L~~~a~~~~ 153 (399)
T TIGR02120 113 LADALAQHPRDFPPLYRALVAAGEASGALDAVLERLADYLE 153 (399)
T ss_pred HHHHHHhCcccCCHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 44444444445555554444455555555555555555444
No 107
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=36.30 E-value=5e+02 Score=26.79 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=30.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHHHHH
Q 021349 41 DQNLNLFLAEAENVKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLK 100 (313)
Q Consensus 41 ~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~ei~~ 100 (313)
+.....|-.....+...|+.+......|....+.... .+.....++++...+..++++
T Consensus 220 ~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek--~~~~~eslre~~~~L~~D~nK 277 (581)
T KOG0995|consen 220 DELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREK--DPGKEESLREKKARLQDDVNK 277 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CcchHHHHHHHHHHHHhHHHH
Confidence 3344445555666777777777777777666543221 122333444444444444443
No 108
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=36.09 E-value=84 Score=21.00 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 021349 227 EIEKSLLELHQIFLDMAVMVEAQGEQM 253 (313)
Q Consensus 227 ~ie~~i~el~~lf~~l~~lV~~Qge~i 253 (313)
.|-..+.++++++.+|-.++.+|-.-+
T Consensus 5 ~l~~ql~~l~~~l~elk~~l~~Q~kE~ 31 (45)
T PF11598_consen 5 QLIKQLSELNQMLQELKELLRQQIKET 31 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888775433
No 109
>PRK13872 conjugal transfer protein TrbF; Provisional
Probab=35.69 E-value=1.1e+02 Score=27.37 Aligned_cols=7 Identities=0% Similarity=-0.073 Sum_probs=3.0
Q ss_pred HHHhccC
Q 021349 304 IPIATSF 310 (313)
Q Consensus 304 ~~i~~~~ 310 (313)
+..+.|.
T Consensus 59 v~~l~pl 65 (228)
T PRK13872 59 LVWQSAR 65 (228)
T ss_pred HHHhhcc
Confidence 3344444
No 110
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=35.67 E-value=2.2 Score=32.26 Aligned_cols=12 Identities=33% Similarity=0.839 Sum_probs=0.8
Q ss_pred HhcchhhHHHHH
Q 021349 281 QRSNRKWMCVGI 292 (313)
Q Consensus 281 qk~~rk~~c~~~ 292 (313)
.++.|.|++++|
T Consensus 61 ~rkKrrwlwLli 72 (81)
T PF14812_consen 61 PRKKRRWLWLLI 72 (81)
T ss_dssp ----------TT
T ss_pred ccccchhHHHHH
Confidence 444455554433
No 111
>PHA02844 putative transmembrane protein; Provisional
Probab=35.66 E-value=34 Score=25.34 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=17.8
Q ss_pred HHhcchhhHHHHHHHHHHHHHHHHHHHh
Q 021349 280 YQRSNRKWMCVGIILLLLIILLIVIPIA 307 (313)
Q Consensus 280 ~qk~~rk~~c~~~~~~~ii~~ii~~~i~ 307 (313)
+.++++++.-+..++++++++++++.++
T Consensus 38 ~~~~~~~~~~~~~~ii~i~~v~~~~~~~ 65 (75)
T PHA02844 38 VNKNNVCSSSTKIWILTIIFVVFATFLT 65 (75)
T ss_pred ccccccCChhHHHHHHHHHHHHHHHHHH
Confidence 4445567788888887766655555443
No 112
>PF12166 DUF3595: Protein of unknown function (DUF3595); InterPro: IPR021999 This family of proteins is functionally uncharacterised.This family of proteins is found in eukaryotes. Proteins in this family are typically between 578 and 2525 amino acids in length.
Probab=35.27 E-value=30 Score=33.94 Aligned_cols=22 Identities=36% Similarity=0.606 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhc
Q 021349 287 WMCVGIILLLLIILLIVIPIAT 308 (313)
Q Consensus 287 ~~c~~~~~~~ii~~ii~~~i~~ 308 (313)
+++.+++++++++++|.+|+++
T Consensus 63 K~~~G~~~~~~li~iiw~PLll 84 (422)
T PF12166_consen 63 KYLMGGLLLLLLIIIIWFPLLL 84 (422)
T ss_pred EeeehHHHHHHHHHHHHHHHHH
Confidence 4567777777788888888773
No 113
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=34.57 E-value=1.8e+02 Score=21.10 Aligned_cols=65 Identities=17% Similarity=0.134 Sum_probs=38.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 40 MDQNLNLFLAEAENVKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRARNI 105 (313)
Q Consensus 40 ~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~ei~~~~~~i 105 (313)
....+...+.....+...|......++.|....... ....+.+...+..+++.+...-..+...+
T Consensus 32 ~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L-~~~~~~~~~~i~~~~~~l~~~w~~l~~~~ 96 (105)
T PF00435_consen 32 DLEELEEQLKKHKELQEEIESRQERLESLNEQAQQL-IDSGPEDSDEIQEKLEELNQRWEALCELV 96 (105)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566677777888888888888888777666544 23334444455555544444333333333
No 114
>PHA03049 IMV membrane protein; Provisional
Probab=34.09 E-value=53 Score=23.77 Aligned_cols=14 Identities=43% Similarity=0.463 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHh
Q 021349 294 LLLLIILLIVIPIA 307 (313)
Q Consensus 294 ~~~ii~~ii~~~i~ 307 (313)
++++|+.+|+-+|+
T Consensus 10 ICVaIi~lIvYgiY 23 (68)
T PHA03049 10 ICVVIIGLIVYGIY 23 (68)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334445555555
No 115
>smart00150 SPEC Spectrin repeats.
Probab=34.07 E-value=1.8e+02 Score=21.00 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=25.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021349 40 MDQNLNLFLAEAENVKKEMEEIRDVLGRLQEANEQS 75 (313)
Q Consensus 40 ~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~ 75 (313)
....+...+...+.+...|......+..+..+-++.
T Consensus 29 d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L 64 (101)
T smart00150 29 DLESVEALLKKHEALEAELEAHEERVEALNELGEQL 64 (101)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 345556677777888888888888888777765543
No 116
>PRK10404 hypothetical protein; Provisional
Probab=33.69 E-value=2.3e+02 Score=22.15 Aligned_cols=43 Identities=16% Similarity=0.335 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhcchhhHHHHHHHHH
Q 021349 253 MDDIEHHVMNASHYVKD--------GTKELKTAKDYQRSNRKWMCVGIILLL 296 (313)
Q Consensus 253 id~Ie~nv~~a~~~v~~--------g~~~L~kA~~~qk~~rk~~c~~~~~~~ 296 (313)
=++++..+..+.+.... +......|..|-+ -+.|.-+.|..++
T Consensus 40 R~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~-e~Pw~avGiaagv 90 (101)
T PRK10404 40 KARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVH-EKPWQGIGVGAAV 90 (101)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHH
Confidence 34555555555553333 3333444445543 3567766654443
No 117
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=33.67 E-value=63 Score=23.48 Aligned_cols=16 Identities=44% Similarity=0.476 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHh
Q 021349 292 IILLLLIILLIVIPIA 307 (313)
Q Consensus 292 ~~~~~ii~~ii~~~i~ 307 (313)
++++++|+++|+-+++
T Consensus 8 i~ICVaii~lIlY~iY 23 (68)
T PF05961_consen 8 IIICVAIIGLILYGIY 23 (68)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344445555555
No 118
>COG1315 Uncharacterized conserved protein [Function unknown]
Probab=33.41 E-value=2.4e+02 Score=28.72 Aligned_cols=73 Identities=18% Similarity=0.204 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 46 LFLAEAENVKKEMEEIRDVLGRLQEANEQ-------SKSLHKPEALKLLRHKINKDVVTVLKRARNIKSHLEDMDRANAA 118 (313)
Q Consensus 46 ~f~~~v~~I~~~I~~i~~~i~~L~~l~~~-------~~~~~~~~~~~~l~~~i~~l~~ei~~~~~~ik~~Lk~l~~~~~~ 118 (313)
+|++..+.+...+...++++..|..+... .+.-..+.+-..+...++...-+....+.+++-.++.++..+..
T Consensus 407 e~~~~l~~lt~~~~~~ee~l~~Lt~~l~~l~~~~i~~~~~~l~~dk~~~~~~vnn~ki~l~~~ieki~~~l~~lqe~le~ 486 (543)
T COG1315 407 EIVERLKELTEEISLHEERLKKLTKLLVALVKVKIESKKNILPPDKESLLTAVNNTKITLRNSIEKIKAELEGLQEELEV 486 (543)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHhh
Confidence 45555555555555544444444333221 11111222333556777777777788888899999988887543
No 119
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=33.02 E-value=2.6e+02 Score=22.60 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 93 KDVVTVLKRARNIKSHLEDMDRANAANKRLSGCKEGTPIYRTRIAVTNGLRKKLKELMMEFQGL 156 (313)
Q Consensus 93 ~l~~ei~~~~~~ik~~Lk~l~~~~~~~~~~~~~~~~s~~~rir~~~~~~L~~~f~~~~~~fq~~ 156 (313)
++..++..++..+..++..++. |...+..|.|+.. .+|..++++||..
T Consensus 4 dt~~kmkeL~e~~~~D~~K~EK-----------GNKAAGtRaRK~s-----leLeKLaKefRKe 51 (123)
T PF07432_consen 4 DTFKKMKELLESFEADAEKAEK-----------GNKAAGTRARKAS-----LELEKLAKEFRKE 51 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-----------cchHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 3445555555555555544332 1123456777554 5788888899875
No 120
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=31.85 E-value=5.1e+02 Score=25.75 Aligned_cols=60 Identities=10% Similarity=0.203 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 218 IQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTA 277 (313)
Q Consensus 218 i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA 277 (313)
+.+-..+|..+++.|.+..+-+..|...+.++.+-|..|+..+-.+.....+..+.|...
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~ 99 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADL 99 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHH
Confidence 445557788888888888888888888888888888888888877777776666655444
No 121
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=31.79 E-value=4.5e+02 Score=25.83 Aligned_cols=38 Identities=24% Similarity=0.475 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 021349 230 KSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYV 267 (313)
Q Consensus 230 ~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v 267 (313)
+.+......|-++-.....-||.--+++.-++...+|.
T Consensus 112 ~al~~~~~~F~~~~~~~v~~gE~~G~L~~~l~~la~y~ 149 (397)
T COG1459 112 EALAQLPGVFPDLYVAMVAAGERSGNLDEVLQRLAKYL 149 (397)
T ss_pred HHHHhCcccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444433
No 122
>PRK13673 hypothetical protein; Provisional
Probab=31.48 E-value=51 Score=26.72 Aligned_cols=20 Identities=20% Similarity=-0.071 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021349 220 DRHDTAKEIEKSLLELHQIF 239 (313)
Q Consensus 220 ~R~~~i~~ie~~i~el~~lf 239 (313)
.|---+--|-..+.-+...|
T Consensus 37 lRLfyil~iiTG~~l~~~~~ 56 (118)
T PRK13673 37 LRLFYILIIITGFWLLIRSF 56 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444555544444443
No 123
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=31.34 E-value=1.2e+02 Score=26.86 Aligned_cols=15 Identities=7% Similarity=0.138 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q 021349 221 RHDTAKEIEKSLLEL 235 (313)
Q Consensus 221 R~~~i~~ie~~i~el 235 (313)
-++++..++..|..+
T Consensus 106 W~~~i~~~~~~i~~l 120 (204)
T PF00517_consen 106 WEKEISNYTGNIYNL 120 (204)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHhcccHHHHHHH
Confidence 445555555444433
No 124
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=31.29 E-value=2.3e+02 Score=21.39 Aligned_cols=16 Identities=25% Similarity=0.474 Sum_probs=8.1
Q ss_pred chhhHHHHHHHHHHHH
Q 021349 284 NRKWMCVGIILLLLII 299 (313)
Q Consensus 284 ~rk~~c~~~~~~~ii~ 299 (313)
.++|.-+.+.+++-++
T Consensus 71 e~P~~svgiAagvG~l 86 (94)
T PF05957_consen 71 ENPWQSVGIAAGVGFL 86 (94)
T ss_pred HChHHHHHHHHHHHHH
Confidence 4567665554444333
No 125
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=31.04 E-value=5.8e+02 Score=25.90 Aligned_cols=54 Identities=15% Similarity=0.243 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 021349 216 VEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKD 269 (313)
Q Consensus 216 ~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~ 269 (313)
..+..-...+..|...+.++.+++.+++.-+.+|...++.|..++.....-++.
T Consensus 433 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~eq~~~~~~i~~~i~~i~~~~~~ 486 (554)
T PRK15041 433 TLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQ 486 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667888999999999999999999999999999998888776555444
No 126
>PHA02650 hypothetical protein; Provisional
Probab=30.24 E-value=56 Score=24.51 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=16.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHh
Q 021349 283 SNRKWMCVGIILLLLIILLIVIPIA 307 (313)
Q Consensus 283 ~~rk~~c~~~~~~~ii~~ii~~~i~ 307 (313)
++++|.-+.+++++++++++++.++
T Consensus 42 ~~~~~~~~~~~ii~i~~v~i~~l~~ 66 (81)
T PHA02650 42 KSVSWFNGQNFIFLIFSLIIVALFS 66 (81)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHH
Confidence 4566778888887766666555444
No 127
>PHA03395 p10 fibrous body protein; Provisional
Probab=29.60 E-value=2.6e+02 Score=21.42 Aligned_cols=56 Identities=13% Similarity=0.331 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 53 NVKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRARNIKSHLEDMDR 114 (313)
Q Consensus 53 ~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~ei~~~~~~ik~~Lk~l~~ 114 (313)
-|+.+|..+..++..|+....... .+..+..++..+++.+...+ ..+...+..|..
T Consensus 8 ~Ir~dIkavd~KVdalQ~~V~~l~--~nlpdv~~l~~kLdaq~~~L----tti~tkv~~I~d 63 (87)
T PHA03395 8 LIRQDIKAVSDKVDALQAAVDDVR--ANLPDVTEINEKLDAQSASL----DTISSAVDNITD 63 (87)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH--hcCCcHHHHHHHHHhHHHHH----HHHHHHHHHHHH
Confidence 355555555666665555443321 11223456777777777655 344445554443
No 128
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=29.58 E-value=6.6e+02 Score=26.14 Aligned_cols=37 Identities=24% Similarity=0.332 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 021349 221 RHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIE 257 (313)
Q Consensus 221 R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie 257 (313)
+....++..+.+..||+.|.+|-..|.+=|...-.|-
T Consensus 545 kDe~~rkaYK~La~lh~~c~~Li~~v~~tG~~~rEir 581 (594)
T PF05667_consen 545 KDEAARKAYKLLASLHENCSQLIETVEETGTISREIR 581 (594)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 6677899999999999999999999999998865553
No 129
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=29.37 E-value=1.9e+02 Score=19.75 Aligned_cols=49 Identities=8% Similarity=0.230 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 021349 223 DTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGT 271 (313)
Q Consensus 223 ~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~ 271 (313)
..|..|..-..+++.+..+=+.++..=..-+|+...++..+...+.++.
T Consensus 11 ~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~ 59 (63)
T PF05739_consen 11 QSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKAL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444445555555555555555555555555554443
No 130
>PRK11020 hypothetical protein; Provisional
Probab=28.88 E-value=3.1e+02 Score=22.10 Aligned_cols=48 Identities=10% Similarity=0.111 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHHHHHH
Q 021349 54 VKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKR 101 (313)
Q Consensus 54 I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~ei~~~ 101 (313)
++.+|..+++.++.++........-.+..-..++.++++.++.+|.++
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~l 50 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARL 50 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666554443333444443445555555555555544
No 131
>PHA03054 IMV membrane protein; Provisional
Probab=28.81 E-value=63 Score=23.71 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=16.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHh
Q 021349 283 SNRKWMCVGIILLLLIILLIVIPIA 307 (313)
Q Consensus 283 ~~rk~~c~~~~~~~ii~~ii~~~i~ 307 (313)
+++++.-+.+++++++++++++.++
T Consensus 41 ~~~~~~~~~~~ii~l~~v~~~~l~~ 65 (72)
T PHA03054 41 NNTGCWGWYWLIIIFFIVLILLLLI 65 (72)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHH
Confidence 4456778888887766666555443
No 132
>PF10749 DUF2534: Protein of unknown function (DUF2534); InterPro: IPR019685 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae.
Probab=28.81 E-value=67 Score=24.27 Aligned_cols=14 Identities=14% Similarity=0.399 Sum_probs=5.1
Q ss_pred hhHHHHHHHHHHHH
Q 021349 286 KWMCVGIILLLLII 299 (313)
Q Consensus 286 k~~c~~~~~~~ii~ 299 (313)
|+.++.++++.+++
T Consensus 13 kkFl~~l~~vfiia 26 (85)
T PF10749_consen 13 KKFLLALAIVFIIA 26 (85)
T ss_pred hHHHHHHHHHHHHH
Confidence 33333333333333
No 133
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=28.08 E-value=3.3e+02 Score=23.14 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 215 VVEIQDRHDTAKEIEKSLLELHQIFLDMAV 244 (313)
Q Consensus 215 l~~i~~R~~~i~~ie~~i~el~~lf~~l~~ 244 (313)
..-++.|++.++.+-..++.+ ..++|+
T Consensus 54 ~~~lr~Rydrlr~va~rvQ~v---lgd~At 80 (156)
T PF08372_consen 54 PDSLRMRYDRLRSVAGRVQNV---LGDVAT 80 (156)
T ss_pred cHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 345678888888877665544 345543
No 134
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=27.78 E-value=5.1e+02 Score=24.59 Aligned_cols=29 Identities=10% Similarity=0.239 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 89 HKINKDVVTVLKRARNIKSHLEDMDRANA 117 (313)
Q Consensus 89 ~~i~~l~~ei~~~~~~ik~~Lk~l~~~~~ 117 (313)
++++.+...|-.....+...|+.|.+++.
T Consensus 230 ~QM~s~~~nIe~~~~~~~~~Ldklh~eit 258 (384)
T KOG0972|consen 230 EQMNSMHKNIEQKVGNVGPYLDKLHKEIT 258 (384)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 56667777777777777777777777643
No 135
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=27.51 E-value=2.7e+02 Score=22.52 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 235 LHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKD 279 (313)
Q Consensus 235 l~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 279 (313)
|.+.|..|..|++.=..-++.+|...-.|...+-.|..+|++..+
T Consensus 2 lKdt~~kmkeL~e~~~~D~~K~EKGNKAAGtRaRK~sleLeKLaK 46 (123)
T PF07432_consen 2 LKDTFKKMKELLESFEADAEKAEKGNKAAGTRARKASLELEKLAK 46 (123)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence 456677777777654444567888888888888888888887643
No 136
>PRK04406 hypothetical protein; Provisional
Probab=27.45 E-value=2.6e+02 Score=20.66 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 021349 223 DTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKD 269 (313)
Q Consensus 223 ~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~ 269 (313)
..|..||..+.-.-....+|+..|..|...||.....+..-...+..
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777777888888888899998888888777776655543
No 137
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=27.19 E-value=2.7e+02 Score=28.75 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 021349 220 DRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQM 253 (313)
Q Consensus 220 ~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~i 253 (313)
+-+.+++.++++|..|++=..-|+.+|-+-.-.+
T Consensus 432 ~~~~d~~~~~~~i~~l~~~~~sl~~~v~qnr~~l 465 (561)
T PF00429_consen 432 ALEEDLQALEDSISALQEQLTSLAEVVLQNRRAL 465 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence 3445555555566655555555555555444443
No 138
>PRK00846 hypothetical protein; Provisional
Probab=26.99 E-value=2.7e+02 Score=20.79 Aligned_cols=48 Identities=8% Similarity=-0.040 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 021349 223 DTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDG 270 (313)
Q Consensus 223 ~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g 270 (313)
..|..||..+.-.-....+|+..|..|...|++....+..-.+.+...
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446667777777777777888888888888888888877766665544
No 139
>PRK13887 conjugal transfer protein TrbF; Provisional
Probab=26.97 E-value=1.8e+02 Score=26.43 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=10.8
Q ss_pred chhhHHHHHH-HHHHHHHHHHHHHhccC
Q 021349 284 NRKWMCVGII-LLLLIILLIVIPIATSF 310 (313)
Q Consensus 284 ~rk~~c~~~~-~~~ii~~ii~~~i~~~~ 310 (313)
.+.|+++.++ +++.+++++.+..+.|.
T Consensus 52 ~~~w~v~a~~~~~ia~~~v~av~~l~pl 79 (250)
T PRK13887 52 RQTWQVVGILSLLIALAAVGGVIHIGSQ 79 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3345543333 33333333334455554
No 140
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=26.93 E-value=2.6e+02 Score=20.51 Aligned_cols=14 Identities=14% Similarity=0.029 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 021349 261 MNASHYVKDGTKEL 274 (313)
Q Consensus 261 ~~a~~~v~~g~~~L 274 (313)
+...+.|+..+.++
T Consensus 22 d~iEeKvEf~~~Ei 35 (70)
T PF04210_consen 22 DEIEEKVEFTNAEI 35 (70)
T ss_pred HHHHHHHHhHHHHH
Confidence 33334444444443
No 141
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=26.60 E-value=1.7e+02 Score=20.71 Aligned_cols=16 Identities=19% Similarity=0.515 Sum_probs=6.4
Q ss_pred HhcchhhHHHHHHHHH
Q 021349 281 QRSNRKWMCVGIILLL 296 (313)
Q Consensus 281 qk~~rk~~c~~~~~~~ 296 (313)
+++.|..+.+++++++
T Consensus 37 r~R~r~~~~~~~li~a 52 (64)
T COG4068 37 RKRQRNFMILMFLILA 52 (64)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444433333
No 142
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=26.55 E-value=2.5e+02 Score=20.29 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc----chhhHHHHHHHHHHHHHHH
Q 021349 256 IEHHVMNASHYVKDGTKELKTAKDYQRS----NRKWMCVGIILLLLIILLI 302 (313)
Q Consensus 256 Ie~nv~~a~~~v~~g~~~L~kA~~~qk~----~rk~~c~~~~~~~ii~~ii 302 (313)
++.-.+...+++++...-|..|++--+. .-|.--++++++-+|..+|
T Consensus 4 ~~~~~e~~~~~lke~~rvl~~arKP~~eEy~~~aKi~~~Gi~liG~IGfiI 54 (65)
T COG2443 4 MMDKPEELREFLKEYRRVLKVARKPDWEEYSKIAKITGLGILLIGIIGFII 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677778888888888777654332 2233334444444444444
No 143
>PF15106 TMEM156: TMEM156 protein family
Probab=26.50 E-value=69 Score=28.62 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=12.6
Q ss_pred HHHhcchhhHHHHHHHHHHHHHHHH
Q 021349 279 DYQRSNRKWMCVGIILLLLIILLIV 303 (313)
Q Consensus 279 ~~qk~~rk~~c~~~~~~~ii~~ii~ 303 (313)
++--.+-|..|++++++++|++||+
T Consensus 168 kn~~CsmKITWYvLVllVfiflii~ 192 (226)
T PF15106_consen 168 KNSTCSMKITWYVLVLLVFIFLIIL 192 (226)
T ss_pred cCceeehhhHHHHHHHHHHHHHHHH
Confidence 3444455665655555554444443
No 144
>PHA02642 C-type lectin-like protein; Provisional
Probab=26.42 E-value=30 Score=31.06 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=11.3
Q ss_pred hhhHHHHHHHH-HHHHHHHHHHHhccC
Q 021349 285 RKWMCVGIILL-LLIILLIVIPIATSF 310 (313)
Q Consensus 285 rk~~c~~~~~~-~ii~~ii~~~i~~~~ 310 (313)
.|.+||.++|. +|.+.+|.|.+.+.+
T Consensus 48 ~~~~~c~~~i~~l~~~~~~~l~~~~~~ 74 (216)
T PHA02642 48 EKLYCCIITICILITINLVPIIILMAF 74 (216)
T ss_pred cceeeeeehHHHHHHHHHHHHHHHHHh
Confidence 35555444333 434444444444443
No 145
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=26.34 E-value=4.7e+02 Score=23.37 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021349 137 AVTNGLRKKLKELMMEF 153 (313)
Q Consensus 137 ~~~~~L~~~f~~~~~~f 153 (313)
..+..+...+...+..+
T Consensus 114 ~il~~~~~~~~~~l~~l 130 (292)
T PF01544_consen 114 AILDEIVDDYFEVLEEL 130 (292)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 146
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=26.32 E-value=2.2e+02 Score=20.22 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhHH
Q 021349 259 HVMNASHYVKDGTKELKTAKDYQRSNRKWMC 289 (313)
Q Consensus 259 nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c 289 (313)
..+...+.+.....-+..|.+--++--+..+
T Consensus 6 ~~e~~~~f~~d~~rvl~~~~KPd~~Ef~~ia 36 (61)
T PRK09400 6 LQENVKNFLEDYKRVLKVARKPTREEFLLVA 36 (61)
T ss_pred HHHhHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 4555666677777777777655443333333
No 147
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.21 E-value=3e+02 Score=21.05 Aligned_cols=58 Identities=17% Similarity=0.226 Sum_probs=31.3
Q ss_pred CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHHH
Q 021349 38 NTMDQNLNLFLAEAENVKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTV 98 (313)
Q Consensus 38 ~~~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~ei 98 (313)
+..+.....|...+..++..+..++...+.+ ...-+...+..+...+..+++.-...|
T Consensus 8 ~~~~~~~e~~~~e~~~L~~~~~~L~~~~R~~---~GedL~~Ls~~eL~~LE~~Le~aL~~V 65 (100)
T PF01486_consen 8 DLWDSQHEELQQEIAKLRKENESLQKELRHL---MGEDLESLSLKELQQLEQQLESALKRV 65 (100)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccccccccchHHHHHHHHhhhhhHHHH
Confidence 3445555566666666666666666444433 223334445556666666666555444
No 148
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=25.54 E-value=5.4e+02 Score=23.81 Aligned_cols=40 Identities=10% Similarity=-0.009 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHHHHH
Q 021349 262 NASHYVKDGTKELKTAKDYQRSN--RKWMCVGIILLLLIILL 301 (313)
Q Consensus 262 ~a~~~v~~g~~~L~kA~~~qk~~--rk~~c~~~~~~~ii~~i 301 (313)
...++-++-.+..++|.+-+|.+ .|..-|++.++.+|..+
T Consensus 34 ~~~e~~~~~~e~~~kaeeaqK~Gi~~kIf~wi~~avsvv~~~ 75 (306)
T PF04888_consen 34 KAEEKAEEIEEAQEKAEEAQKAGIFSKIFGWIGTAVSVVAGA 75 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555552 24333444444444333
No 149
>smart00080 LIF_OSM leukemia inhibitory factor. OSM, Oncostatin M
Probab=25.10 E-value=3.5e+02 Score=22.95 Aligned_cols=95 Identities=19% Similarity=0.189 Sum_probs=55.7
Q ss_pred hhhhchhhhhhhhhhhhcCCCCCCccccccCCcCchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhhcCChHHH
Q 021349 7 KSFTSYVDLKKEAMKDLEAGPDPDLEMTTSTNTMDQNLNLFLAEAENVKKE--MEEIRDVLGRLQEANEQSKSLHKPEAL 84 (313)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~I~~~--I~~i~~~i~~L~~l~~~~~~~~~~~~~ 84 (313)
.-|+.|.-+|-++-.+++.-|-| .|++-++.+.- =.++..-++.- ...|-..+..+...++. .+|..
T Consensus 28 sLl~~Y~~~QG~p~pnld~~c~~-----~ptafp~~dt~-~t~k~rl~~~l~~~a~L~~~L~~~~~~Q~~----LnP~a- 96 (157)
T smart00080 28 ALFIPYITAQGEPFPNLDKLCRP-----NPTDFPSFHAN-GTEKAKLVELYRIVAYLGASLGNITRDQQV----LNPTA- 96 (157)
T ss_pred HHHHHHHHHcCCCCCCHHHHccc-----CCCcCCCcccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCccc-
Confidence 34889999999999999988865 22222332222 12222222222 34444445555444432 22221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 85 KLLRHKINKDVVTVLKRARNIKSHLEDM 112 (313)
Q Consensus 85 ~~l~~~i~~l~~ei~~~~~~ik~~Lk~l 112 (313)
..+..+++.....|..+...|.-.+.-+
T Consensus 97 ~~L~~KL~~a~~ni~gL~nNI~C~~~~~ 124 (157)
T smart00080 97 ASLQSKLNATRDNIRGLLSNVLCRLCLK 124 (157)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2456688889999988888887776543
No 150
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=24.95 E-value=2.2e+02 Score=19.10 Aligned_cols=56 Identities=16% Similarity=0.255 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 225 AKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDY 280 (313)
Q Consensus 225 i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~ 280 (313)
+.+-...+..|.....++..+..+=|..|+.=...++....++..+...+.+|.+.
T Consensus 7 ~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~ 62 (66)
T smart00397 7 EEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKR 62 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555555555555555555555555555443
No 151
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=24.80 E-value=3.2e+02 Score=20.91 Aligned_cols=66 Identities=8% Similarity=0.178 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 214 TVVEIQDRHDTAK-EIEKSLLELHQIFLDMAVMVE-AQGEQMDDIEHHVMNASHYVKDGTKELKTAKD 279 (313)
Q Consensus 214 ~l~~i~~R~~~i~-~ie~~i~el~~lf~~l~~lV~-~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 279 (313)
.+..+......+. +.+..-.+|..-|..|-..+. ....+++.|+..-......+..-...+.....
T Consensus 22 ~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~ 89 (127)
T smart00502 22 ALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQE 89 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433 344455667777888887776 55678888888776666666555555544433
No 152
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=24.54 E-value=1.1e+02 Score=25.77 Aligned_cols=13 Identities=0% Similarity=0.212 Sum_probs=5.1
Q ss_pred HhhHHHHHHHHHH
Q 021349 248 AQGEQMDDIEHHV 260 (313)
Q Consensus 248 ~Qge~id~Ie~nv 260 (313)
.++..+...-..+
T Consensus 79 ~~~~~v~~~k~~L 91 (145)
T PF10661_consen 79 KSDNTVKETKDSL 91 (145)
T ss_pred cccchHHHHHHHh
Confidence 3343444443333
No 153
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=24.39 E-value=6.4e+02 Score=24.25 Aligned_cols=40 Identities=15% Similarity=0.256 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 021349 227 EIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYV 267 (313)
Q Consensus 227 ~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v 267 (313)
.+...+.+.. .|-.+..-...-||---+++.-+....++.
T Consensus 314 sls~al~~~~-~fp~~~~~~i~~GE~sG~L~~~L~~la~~~ 353 (399)
T PRK10573 314 PLWLALKNHP-LFPPLCLQLVRVGEESGSLDLMLENLAHWH 353 (399)
T ss_pred cHHHHHhhCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 4445555444 566555555556665555555555544433
No 154
>COG4640 Predicted membrane protein [Function unknown]
Probab=24.06 E-value=1e+02 Score=30.22 Aligned_cols=16 Identities=19% Similarity=0.229 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHhcc
Q 021349 269 DGTKELKTAKDYQRSN 284 (313)
Q Consensus 269 ~g~~~L~kA~~~qk~~ 284 (313)
+|++.+..-..-.|++
T Consensus 31 qan~~tn~i~~trrkn 46 (465)
T COG4640 31 QANKSTNEIIQTRRKN 46 (465)
T ss_pred hhhHHHHHHHHhhccC
Confidence 3444444333333443
No 155
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=23.96 E-value=67 Score=31.34 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHhccC
Q 021349 290 VGIILLLLIILLIVIPIATSF 310 (313)
Q Consensus 290 ~~~~~~~ii~~ii~~~i~~~~ 310 (313)
+.+|+++.|+++++++.++.|
T Consensus 302 ~~~c~~~~i~~lL~ig~~~gF 322 (387)
T PF12751_consen 302 FASCIYLSILLLLVIGFAIGF 322 (387)
T ss_pred hhHHHHHHHHHHHHHHHHHHh
Confidence 444554444444444444444
No 156
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=23.83 E-value=2.8e+02 Score=19.94 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 219 QDRHDTAKEIEKSLLELHQIFLDMAVMVE 247 (313)
Q Consensus 219 ~~R~~~i~~ie~~i~el~~lf~~l~~lV~ 247 (313)
.+|...|..++..+.+..++..+|...|.
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~ 49 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVR 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999988775
No 157
>PHA03046 Hypothetical protein; Provisional
Probab=23.53 E-value=4.3e+02 Score=21.88 Aligned_cols=45 Identities=16% Similarity=0.188 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 021349 223 DTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYV 267 (313)
Q Consensus 223 ~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v 267 (313)
-+|+.+.--+.-|-.+|+........-+..|+|+|.+++....++
T Consensus 84 ~~iKd~vlRL~vlEK~~~~~i~~c~~~~~~i~RLE~H~ETlRk~M 128 (142)
T PHA03046 84 MDIKDFVLRLLVLEKLFQLSIKRCKSLNNIIKRLENHTETVRKNM 128 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777778888888888888899999999999988865544
No 158
>PHA02414 hypothetical protein
Probab=23.25 E-value=3.7e+02 Score=21.06 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 021349 224 TAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYV 267 (313)
Q Consensus 224 ~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v 267 (313)
+-.+++..+.||..|..-|..=+--|.+---.|-|.++.-.+.+
T Consensus 30 dn~eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee~i 73 (111)
T PHA02414 30 DNKELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEEKI 73 (111)
T ss_pred chHHHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHHHH
Confidence 44567888888888888777777777777677777776644433
No 159
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=23.07 E-value=8.3e+02 Score=25.05 Aligned_cols=78 Identities=13% Similarity=0.139 Sum_probs=53.9
Q ss_pred ccccCCcCchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 33 MTTSTNTMDQNLNLFLAEAEN-VKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRARNIKSHLED 111 (313)
Q Consensus 33 ~~~~~~~~~~~~~~f~~~v~~-I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~ei~~~~~~ik~~Lk~ 111 (313)
.++.+.++......|-+.-++ +...+..|...+.......+++.-. .....-..++.+.+.+...+..+...|+.
T Consensus 55 ~l~l~Ges~~~f~~w~~~~~~i~~~~~~~ie~~l~~ae~~~~~~~f~----~a~~~~~~~~~~l~~~e~~~~~i~~~l~~ 130 (569)
T PRK04778 55 KLNLTGQSEEKFEEWRQKWDEIVTNSLPDIEEQLFEAEELNDKFRFR----KAKHEINEIESLLDLIEEDIEQILEELQE 130 (569)
T ss_pred cCCCCcccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777889999999988888 7888889999999988877654321 11222345555566666666666666666
Q ss_pred HHH
Q 021349 112 MDR 114 (313)
Q Consensus 112 l~~ 114 (313)
|..
T Consensus 131 l~~ 133 (569)
T PRK04778 131 LLE 133 (569)
T ss_pred HHH
Confidence 644
No 160
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=23.06 E-value=83 Score=23.10 Aligned_cols=9 Identities=44% Similarity=0.745 Sum_probs=4.7
Q ss_pred HHHhcchhh
Q 021349 279 DYQRSNRKW 287 (313)
Q Consensus 279 ~~qk~~rk~ 287 (313)
+|.+++|+-
T Consensus 8 ~Y~rrSr~~ 16 (72)
T PF13198_consen 8 EYPRRSRKT 16 (72)
T ss_pred HccchhHHH
Confidence 455556653
No 161
>PRK09458 pspB phage shock protein B; Provisional
Probab=22.94 E-value=86 Score=23.33 Aligned_cols=17 Identities=35% Similarity=0.440 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q 021349 291 GIILLLLIILLIVIPIA 307 (313)
Q Consensus 291 ~~~~~~ii~~ii~~~i~ 307 (313)
++++-+||+++++.|+-
T Consensus 5 fl~~PliiF~ifVaPiW 21 (75)
T PRK09458 5 FLAIPLTIFVLFVAPIW 21 (75)
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 44555566666666653
No 162
>PF10173 Mit_KHE1: Mitochondrial K+-H+ exchange-related; InterPro: IPR018786 This entry represents a family of proteins conserved from plants to humans. Their function is not known.
Probab=22.75 E-value=59 Score=28.48 Aligned_cols=39 Identities=26% Similarity=0.364 Sum_probs=19.4
Q ss_pred HHHHHHHH-HHHHHhcchhhHHHHHHHHHHHHHHHHHHHh
Q 021349 269 DGTKELKT-AKDYQRSNRKWMCVGIILLLLIILLIVIPIA 307 (313)
Q Consensus 269 ~g~~~L~k-A~~~qk~~rk~~c~~~~~~~ii~~ii~~~i~ 307 (313)
....+|.+ |.+.+...+|+++++++++=+-+-+.|+|++
T Consensus 118 ~v~~~L~~l~~~~~~~H~k~~~~~~~~~PlT~P~~LiPvi 157 (187)
T PF10173_consen 118 EVLRQLRKLATERQPYHRKRMIWCILGIPLTLPFALIPVI 157 (187)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhcceeeecCC
Confidence 34445544 3333334455555555555455555666664
No 163
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=22.73 E-value=2.4e+02 Score=27.70 Aligned_cols=7 Identities=43% Similarity=0.771 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 021349 233 LELHQIF 239 (313)
Q Consensus 233 ~el~~lf 239 (313)
.+|.++|
T Consensus 128 ~~Le~~~ 134 (406)
T PF04906_consen 128 TRLEEIF 134 (406)
T ss_pred HHHHHHh
Confidence 3333333
No 164
>PRK10884 SH3 domain-containing protein; Provisional
Probab=22.68 E-value=5.4e+02 Score=22.80 Aligned_cols=54 Identities=13% Similarity=0.236 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHH-HHHHHHHHHHHHHHhccC
Q 021349 255 DIEHHVMNASHYVKDGTKELKTAKDYQRSNRKWMCVGI-ILLLLIILLIVIPIATSF 310 (313)
Q Consensus 255 ~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c~~~-~~~~ii~~ii~~~i~~~~ 310 (313)
+....+..+...+.....++..-.+.. ..+|+.++. ++++-+++.+++|-+.|-
T Consensus 143 ~L~~~l~~~~~~~~~l~~~~~~~~~~~--~~~wf~~Gg~v~~~GlllGlilp~l~pr 197 (206)
T PRK10884 143 KLKNQLIVAQKKVDAANLQLDDKQRTI--IMQWFMYGGGVAGIGLLLGLLLPHLIPR 197 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHchHHHHHHHHHHHHhcccccc
Confidence 345566667777777777765544433 455655543 344456677788887764
No 165
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=22.61 E-value=5.6e+02 Score=22.89 Aligned_cols=27 Identities=11% Similarity=0.410 Sum_probs=17.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccCC
Q 021349 285 RKWMCVGIILLLLIILLIVIPIATSFS 311 (313)
Q Consensus 285 rk~~c~~~~~~~ii~~ii~~~i~~~~~ 311 (313)
.-|.-++++++=+++++++..++=||+
T Consensus 151 STwgT~~lmgvNvllFl~~~~~~EPwk 177 (207)
T PF05546_consen 151 STWGTWGLMGVNVLLFLVAQLLVEPWK 177 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 345556666666666666666777874
No 166
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=22.57 E-value=88 Score=30.47 Aligned_cols=10 Identities=10% Similarity=-0.134 Sum_probs=3.7
Q ss_pred hHHHHHHHHH
Q 021349 287 WMCVGIILLL 296 (313)
Q Consensus 287 ~~c~~~~~~~ 296 (313)
||+|++++++
T Consensus 40 k~~Il~~~~~ 49 (377)
T PRK10381 40 KKTIIAITFA 49 (377)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 167
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=22.20 E-value=9e+02 Score=25.16 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHH
Q 021349 142 LRKKLKELMMEFQGL 156 (313)
Q Consensus 142 L~~~f~~~~~~fq~~ 156 (313)
.+.++..++..|+..
T Consensus 484 ~~~~~~~~l~~~~~~ 498 (650)
T TIGR03185 484 IADKAKKTLKEFREK 498 (650)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345556666666653
No 168
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=22.10 E-value=1.3e+02 Score=21.77 Aligned_cols=14 Identities=0% Similarity=0.166 Sum_probs=11.2
Q ss_pred CCCChhHHHHHhhC
Q 021349 178 EYPNEDVIEKIISD 191 (313)
Q Consensus 178 ~~~s~eeie~~ie~ 191 (313)
|++++.++..+++.
T Consensus 27 P~at~~~l~~lve~ 40 (68)
T PF09164_consen 27 PDATPTELKELVEK 40 (68)
T ss_dssp TTS-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 78999999998864
No 169
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=21.85 E-value=7.2e+02 Score=23.87 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021349 54 VKKEMEEIRDVLGRLQEANE 73 (313)
Q Consensus 54 I~~~I~~i~~~i~~L~~l~~ 73 (313)
|.++.+.+.+..++|++.|.
T Consensus 2 ~~eEW~eL~~efq~Lqethr 21 (330)
T PF07851_consen 2 CEEEWEELQKEFQELQETHR 21 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555554
No 170
>PTZ00478 Sec superfamily; Provisional
Probab=21.77 E-value=3e+02 Score=20.82 Aligned_cols=31 Identities=6% Similarity=0.175 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021349 253 MDDIEHHVMNASHYVKDGTKELKTAKDYQRS 283 (313)
Q Consensus 253 id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~ 283 (313)
.+.+++-+....+-+..+..-+.++.+--++
T Consensus 13 m~~~~~v~~~~~eF~kds~r~vkrctKPdrk 43 (81)
T PTZ00478 13 SNPVGYVVSGVQEFANDSRRLIRKCTKPDAK 43 (81)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 3447777888888888888888777554443
No 171
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.67 E-value=5.6e+02 Score=22.97 Aligned_cols=21 Identities=14% Similarity=0.108 Sum_probs=12.6
Q ss_pred hcchhhHHHHHHHHHHHHHHH
Q 021349 282 RSNRKWMCVGIILLLLIILLI 302 (313)
Q Consensus 282 k~~rk~~c~~~~~~~ii~~ii 302 (313)
|+.+.-++++++.+++.++++
T Consensus 185 RR~~~Dk~iF~~G~i~~~v~~ 205 (213)
T KOG3251|consen 185 RRVREDKIIFYGGVILTLVIM 205 (213)
T ss_pred HHHHhhHHHHHHHHHHHHHHH
Confidence 555667777766665554443
No 172
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=21.64 E-value=1.2e+03 Score=26.24 Aligned_cols=52 Identities=12% Similarity=0.250 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHH
Q 021349 214 TVVEIQDRHDTAKEIEKSLLELHQIF-LDMAVMVEAQGEQMDDIEHHVMNASH 265 (313)
Q Consensus 214 ~l~~i~~R~~~i~~ie~~i~el~~lf-~~l~~lV~~Qge~id~Ie~nv~~a~~ 265 (313)
..+.+++-..++..+++.|.+++..+ +.+.....+=..-+..+...|+...+
T Consensus 363 ~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~ 415 (1074)
T KOG0250|consen 363 IENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEE 415 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666677777776666 44444444444444444444444444
No 173
>PHA02513 V1 structural protein V1; Reviewed
Probab=21.55 E-value=1.3e+02 Score=24.15 Aligned_cols=22 Identities=18% Similarity=0.458 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccC
Q 021349 289 CVGIILLLLIILLIVIPIATSF 310 (313)
Q Consensus 289 c~~~~~~~ii~~ii~~~i~~~~ 310 (313)
.++.+++.|++.+++++.+.++
T Consensus 69 ~ii~L~IFIliGivl~~pI~s~ 90 (135)
T PHA02513 69 VLLGLFIFILIGIVLLPVITSQ 90 (135)
T ss_pred HHHHHHHHHHHHHHHhhHHHHH
Confidence 3344444444455566655443
No 174
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=21.51 E-value=1e+02 Score=22.90 Aligned_cols=16 Identities=25% Similarity=0.621 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 021349 291 GIILLLLIILLIVIPI 306 (313)
Q Consensus 291 ~~~~~~ii~~ii~~~i 306 (313)
++++.+||+++++.|+
T Consensus 5 fl~~plivf~ifVap~ 20 (75)
T PF06667_consen 5 FLFVPLIVFMIFVAPI 20 (75)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444455555544
No 175
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.47 E-value=4e+02 Score=23.70 Aligned_cols=18 Identities=22% Similarity=0.625 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021349 219 QDRHDTAKEIEKSLLELH 236 (313)
Q Consensus 219 ~~R~~~i~~ie~~i~el~ 236 (313)
.+|....-..|.++.+++
T Consensus 127 ~~~~~~~~~mena~~~I~ 144 (209)
T KOG1693|consen 127 SNRDTALTQMENAIVEIH 144 (209)
T ss_pred cccchHHHHHHHHHHHHH
Confidence 344445555555555554
No 176
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=21.38 E-value=3.5e+02 Score=20.10 Aligned_cols=66 Identities=12% Similarity=0.089 Sum_probs=38.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 40 MDQNLNLFLAEAENVKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRARNI 105 (313)
Q Consensus 40 ~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~ei~~~~~~i 105 (313)
+.++-...-..+..+...+..++-....|+...++.-...+...-..+...++.++..+-....+|
T Consensus 8 s~~p~~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI 73 (79)
T PF06657_consen 8 SQSPGEALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQI 73 (79)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444566777888888888888888887666654333333333445555555554444444433
No 177
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.32 E-value=65 Score=31.05 Aligned_cols=23 Identities=17% Similarity=0.725 Sum_probs=13.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHh
Q 021349 285 RKWMCVGIILLLLIILLIVIPIA 307 (313)
Q Consensus 285 rk~~c~~~~~~~ii~~ii~~~i~ 307 (313)
..|+.+++++++++++|+|+|+.
T Consensus 188 ~~~~vl~~~fvl~tlaivLFPLW 210 (372)
T KOG2927|consen 188 LMWQVLGVLFVLVTLAIVLFPLW 210 (372)
T ss_pred hhHHHHHHHHHHHHHHHHhcccC
Confidence 34555666666666666666654
No 178
>PF13121 DUF3976: Domain of unknown function (DUF3976)
Probab=21.16 E-value=63 Score=20.52 Aligned_cols=8 Identities=13% Similarity=0.679 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 021349 289 CVGIILLL 296 (313)
Q Consensus 289 c~~~~~~~ 296 (313)
.|.++++.
T Consensus 23 ligclvvm 30 (41)
T PF13121_consen 23 LIGCLVVM 30 (41)
T ss_pred HHHHHHHH
Confidence 33444443
No 179
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=20.86 E-value=8.8e+02 Score=24.51 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=13.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 40 MDQNLNLFLAEAENVKKEMEEIRDVLGRL 68 (313)
Q Consensus 40 ~~~~~~~f~~~v~~I~~~I~~i~~~i~~L 68 (313)
+..-+......+.+++..+..+...-+.|
T Consensus 57 P~DTlrTlva~~k~~r~~~~~l~~~N~~l 85 (472)
T TIGR03752 57 PADTLRTLVAEVKELRKRLAKLISENEAL 85 (472)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555544444433
No 180
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.68 E-value=7.8e+02 Score=24.16 Aligned_cols=53 Identities=13% Similarity=0.263 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 021349 215 VVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVK 268 (313)
Q Consensus 215 l~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~ 268 (313)
+.++.++-.+=..+...+.... +|..+.......||--.+.+.-+..+.+.-+
T Consensus 300 ~~~~~~~v~~G~sl~~al~~~~-~Fp~~~~~mi~~GEesG~L~~mL~~~A~~~~ 352 (397)
T COG1459 300 LEEIIQEVREGGSLSQALEKTG-LFPPLLLQMIAVGEESGKLDEMLEKVADFYE 352 (397)
T ss_pred HHHHHHHHHcchhHHHHHHhCC-CChHHHHHHHHHhhhcccHHHHHHHHHHHHH
Confidence 3344444444445555555554 7888888888889888888888777665544
No 181
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=20.36 E-value=34 Score=27.06 Aligned_cols=20 Identities=30% Similarity=0.549 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHH
Q 021349 284 NRKWMCVGIILLLLIILLIV 303 (313)
Q Consensus 284 ~rk~~c~~~~~~~ii~~ii~ 303 (313)
+|.++|+.++++.+++++.+
T Consensus 25 rR~~k~~~~i~~s~~~ll~l 44 (106)
T PF11837_consen 25 RRPLKCLAAIFSSLLFLLSL 44 (106)
T ss_dssp --------------------
T ss_pred CCcchhHHHHHHHHHHHHHH
Confidence 34344444444433333333
No 182
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=20.21 E-value=1.5e+02 Score=27.20 Aligned_cols=48 Identities=13% Similarity=0.209 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Q 021349 255 DIEHHVMNASHYVKDGTKELKTAKDYQRSNRKWMCVGIILLLLIILLI 302 (313)
Q Consensus 255 ~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c~~~~~~~ii~~ii 302 (313)
+|-..+++=.-+++.|..+|.+=.+...+.++|.+.+...+....+..
T Consensus 94 ~i~~~v~~~~~~~e~a~~~l~~i~~~~~~y~~~l~~~~~g~~~~~f~~ 141 (250)
T COG2966 94 RISRAVEHGRLDLEEAHKKLDEIQKQPLRYSRWLVLLMAGLAAAAFAL 141 (250)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhhhCccccccHHHHHHHHHHHHHHHH
Confidence 444444455556778888887777777777788876666555444433
Done!