Query 021349
Match_columns 313
No_of_seqs 170 out of 1325
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 16:21:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021349.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021349hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dn1_B Syntaxin 1A, syntaxin b 100.0 5.3E-43 1.8E-47 321.5 14.8 243 39-290 25-267 (267)
2 2xhe_B Syntaxin1; exocytosis, 100.0 1.7E-38 5.8E-43 293.4 14.8 252 27-285 26-279 (279)
3 1fio_A SSO1 protein; four heli 100.0 1.3E-30 4.3E-35 228.5 19.5 194 42-250 2-196 (196)
4 3hd7_B Syntaxin-1A; membrane p 100.0 1E-27 3.6E-32 191.0 14.8 95 210-304 8-102 (109)
5 3c98_B Syntaxin-1A; protein co 99.9 1.1E-23 3.9E-28 191.7 14.3 247 35-290 33-279 (279)
6 1jth_B Syntaxin 1A; coiled-coi 99.9 6.4E-24 2.2E-28 158.9 10.2 76 215-290 2-77 (77)
7 2nps_B Syntaxin 13, vesicle-as 99.9 6.5E-22 2.2E-26 145.6 10.3 70 219-288 2-71 (71)
8 1sfc_B Protein (syntaxin 1A), 99.9 1.9E-21 6.6E-26 147.3 9.6 76 210-285 8-83 (83)
9 1s94_A S-syntaxin; three helix 99.8 2.5E-21 8.7E-26 167.4 10.7 147 40-192 34-180 (180)
10 3b5n_B Protein SSO1; snare com 99.8 1.4E-20 4.6E-25 137.7 10.9 68 215-282 2-69 (69)
11 1n7s_B Syntaxin 1A; neuronal s 99.8 2.2E-19 7.5E-24 130.9 9.0 66 213-278 2-67 (68)
12 1gl2_B Syntaxin 7; membrane pr 99.8 7.6E-19 2.6E-23 126.9 8.4 63 217-279 3-65 (65)
13 1ez3_A Syntaxin-1A; three heli 99.8 4.2E-17 1.4E-21 132.8 17.2 122 40-166 3-124 (127)
14 2dnx_A Syntaxin-12; snare, HAB 98.8 7.5E-08 2.6E-12 78.4 14.2 114 44-168 9-122 (130)
15 3hd7_B Syntaxin-1A; membrane p 97.4 0.0066 2.3E-07 47.4 13.9 89 212-304 17-105 (109)
16 2nps_D Syntaxin-6; vesicle fus 97.3 0.00097 3.3E-08 49.5 8.1 67 217-283 13-79 (82)
17 3hd7_A Vesicle-associated memb 97.2 0.01 3.6E-07 44.8 12.7 42 223-264 5-46 (91)
18 1n7s_D SNAP-25A; neuronal snar 97.2 0.0039 1.3E-07 44.1 9.8 57 220-276 7-63 (66)
19 1gl2_D Syntaxin 8, vesicle tra 97.1 0.0019 6.7E-08 45.6 7.5 58 219-276 5-62 (65)
20 1hs7_A Syntaxin VAM3; UP-and-D 97.0 0.0068 2.3E-07 46.3 10.0 86 53-166 7-93 (97)
21 1sfc_D Protein (SNAP-25B), pro 96.9 0.0073 2.5E-07 45.2 9.8 58 219-276 25-82 (87)
22 1l4a_D S-SNAP25 fusion protein 96.6 0.0085 2.9E-07 44.9 7.7 57 220-276 27-83 (87)
23 3b5n_D Protein transport prote 96.5 0.023 8E-07 40.0 9.2 57 220-276 7-63 (64)
24 1nhl_A Synaptosomal-associated 94.7 0.25 8.5E-06 33.3 8.4 44 232-275 9-52 (54)
25 2kog_A Vesicle-associated memb 94.1 0.005 1.7E-07 48.9 -1.4 39 224-262 34-72 (119)
26 1n7s_C SNAP-25A; neuronal snar 93.1 1.5 5.1E-05 31.9 10.6 52 225-276 25-76 (79)
27 4dnd_A Syntaxin-10, SYN10; str 93.1 0.54 1.8E-05 37.6 9.0 99 44-150 26-125 (130)
28 3b5n_C Protein transport prote 91.9 1.4 4.8E-05 31.3 8.9 37 244-280 33-69 (70)
29 3hd7_A Vesicle-associated memb 91.0 3.8 0.00013 30.5 13.1 23 214-236 24-46 (91)
30 1l4a_C S-SNAP25 fusion protein 86.9 2.9 9.9E-05 30.7 7.5 41 234-274 38-78 (83)
31 1gl2_C VTI1B, vesicle transpor 78.6 14 0.00047 25.5 8.9 49 227-275 13-61 (65)
32 2nps_B Syntaxin 13, vesicle-as 78.3 15 0.0005 25.7 8.9 65 215-279 5-69 (71)
33 1wlq_A Geminin; coiled-coil; 2 73.8 23 0.00079 25.7 8.5 61 195-256 18-78 (83)
34 1jth_B Syntaxin 1A; coiled-coi 73.2 22 0.00074 25.2 9.6 66 214-279 8-73 (77)
35 1n7s_B Syntaxin 1A; neuronal s 71.2 22 0.00077 24.5 9.8 55 216-270 12-66 (68)
36 2wvr_A Geminin; DNA replicatio 66.7 38 0.0013 28.8 9.2 72 195-267 95-166 (209)
37 3b5n_B Protein SSO1; snare com 66.3 30 0.001 23.9 9.9 57 216-272 10-66 (69)
38 1gl2_B Syntaxin 7; membrane pr 65.0 30 0.001 23.6 8.7 56 216-271 9-64 (65)
39 1uii_A Geminin; human, DNA rep 64.1 39 0.0013 24.6 8.0 53 195-248 26-78 (83)
40 3ghg_A Fibrinogen alpha chain; 62.5 1.2E+02 0.0041 29.6 14.5 26 137-162 131-156 (562)
41 1sfc_B Protein (syntaxin 1A), 54.3 57 0.0019 23.3 9.9 62 213-274 18-79 (83)
42 3n27_A Fusion glycoprotein F0, 53.3 47 0.0016 23.9 6.4 61 218-280 15-75 (80)
43 1sfc_A VAMP 2, protein (synapt 51.2 72 0.0025 23.6 9.4 40 223-262 30-69 (96)
44 2nps_C Vesicle transport throu 46.6 77 0.0026 22.6 11.0 56 224-279 20-75 (81)
45 3c98_B Syntaxin-1A; protein co 46.5 16 0.00055 31.5 3.9 222 40-280 42-276 (279)
46 3efg_A Protein SLYX homolog; x 43.6 75 0.0026 22.6 6.4 48 223-270 14-61 (78)
47 2ww9_B Protein transport prote 41.1 12 0.0004 27.2 1.7 31 251-281 13-43 (80)
48 2c5k_T Syntaxin TLG1, T-snare 39.9 1.1E+02 0.0038 22.5 9.4 87 45-154 6-92 (95)
49 1deq_A Fibrinogen (alpha chain 36.4 2.7E+02 0.0092 25.9 11.5 22 52-73 63-84 (390)
50 2lf0_A Uncharacterized protein 35.2 1.4E+02 0.0047 23.1 7.0 49 54-102 8-56 (123)
51 4aj5_K Spindle and kinetochore 34.4 1.6E+02 0.0056 22.8 7.3 43 224-269 51-93 (123)
52 2lti_A Astexin1; sidechain-TO- 33.7 16 0.00054 19.9 1.0 13 23-35 2-14 (26)
53 2zxx_A Geminin; coiled-coil, c 32.8 1.4E+02 0.0046 21.5 8.2 40 195-235 14-53 (79)
54 2nps_A VAMP-4, vesicle-associa 32.2 1.1E+02 0.0038 21.2 5.8 38 225-262 10-47 (74)
55 3s4r_A Vimentin; alpha-helix, 27.6 1.8E+02 0.0062 21.2 9.6 28 43-70 17-44 (93)
56 3swy_A Cyclic nucleotide-gated 26.8 1.3E+02 0.0044 19.3 4.8 24 137-160 12-35 (46)
57 2l3l_A Tubulin-specific chaper 26.2 2.1E+02 0.0073 21.6 9.0 48 39-86 32-88 (111)
58 1deq_A Fibrinogen (alpha chain 24.4 4.3E+02 0.015 24.6 10.2 28 87-114 54-81 (390)
59 1m56_D Cytochrome C oxidase; m 23.5 53 0.0018 21.6 2.4 10 286-295 33-42 (51)
60 1m1j_B Fibrinogen beta chain; 23.0 5E+02 0.017 24.8 15.6 51 21-72 65-116 (464)
61 3swf_A CGMP-gated cation chann 20.9 1.7E+02 0.0059 20.6 4.8 24 137-160 14-37 (74)
No 1
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=100.00 E-value=5.3e-43 Score=321.54 Aligned_cols=243 Identities=22% Similarity=0.379 Sum_probs=193.3
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 39 TMDQNLNLFLAEAENVKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRARNIKSHLEDMDRANAA 118 (313)
Q Consensus 39 ~~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~ei~~~~~~ik~~Lk~l~~~~~~ 118 (313)
+++++|+.||+.|++|+..|..|..++..|..+|++.++.+ ...+.++.+|+.++.+|+++++.|+..|+.|+..+..
T Consensus 25 ~~~~~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~--~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~ 102 (267)
T 1dn1_B 25 DRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASP--NPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQ 102 (267)
T ss_dssp --CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS--SCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56778999999999999999999999999999998765443 3334789999999999999999999999999887542
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCCChhHHHHHhhCCCCchHH
Q 021349 119 NKRLSGCKEGTPIYRTRIAVTNGLRKKLKELMMEFQGLRQKMMTEYKETVGRRYFTVTGEYPNEDVIEKIISDNNGSEEF 198 (313)
Q Consensus 119 ~~~~~~~~~~s~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~yk~~i~Rr~~~v~~~~~s~eeie~~ie~g~~~~~~ 198 (313)
.+++++++++.|+|++++..|+++|+++|++|+.+|..|+..++.++.|+| .+.||++++++++.++++|+ + .+
T Consensus 103 ---~~~~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~-~i~~~~~tdeeie~~ie~g~-~-~~ 176 (267)
T 1dn1_B 103 ---EEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQL-EITGRTTTSEELEDMLESGN-P-AI 176 (267)
T ss_dssp ---HHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCCCHHHHHHHHHTCS-S-CT
T ss_pred ---ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hccCCCCCHHHHHHHHhCCc-H-HH
Confidence 122344467789999999999999999999999999999999999998875 45789999999999999886 3 35
Q ss_pred hHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 199 LTHAIQEHGRGKVLETVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAK 278 (313)
Q Consensus 199 ~q~~l~~~~~~q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 278 (313)
|++++... .++++.++.++++||++|.+||++|.+||+||.|||.||++||++||+||+||+.|..||++|..+|.+|.
T Consensus 177 f~q~~l~~-~~~~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~ 255 (267)
T 1dn1_B 177 FASGIIMD-SSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 255 (267)
T ss_dssp TTTTCCCC-SHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-------
T ss_pred HHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55443221 23567789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcchhhHHH
Q 021349 279 DYQRSNRKWMCV 290 (313)
Q Consensus 279 ~~qk~~rk~~c~ 290 (313)
+||+++|||+||
T Consensus 256 ~~q~~~rkk~~~ 267 (267)
T 1dn1_B 256 KYQSKARRKKIM 267 (267)
T ss_dssp ------------
T ss_pred HHHHHhcCcccC
Confidence 999999999986
No 2
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=100.00 E-value=1.7e-38 Score=293.44 Aligned_cols=252 Identities=24% Similarity=0.431 Sum_probs=179.2
Q ss_pred CCCCccccccCCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 27 PDPDLEMTTSTNTMDQNLNLFLAEAENVKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRARNIK 106 (313)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~ei~~~~~~ik 106 (313)
.+|+.++.+..-++++.|++|++.|++|...|..|..++..|..+|.+.+..+...+...++.+|+.++.+|+++++.|+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~ 105 (279)
T 2xhe_B 26 AEAQIEETSLSAQPEPFMADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIR 105 (279)
T ss_dssp --------------CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443334444467788999999999999999999999999999998765544445445899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCC-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCCChhH
Q 021349 107 SHLEDMDRANAANKRLSGCKEGT-P-IYRTRIAVTNGLRKKLKELMMEFQGLRQKMMTEYKETVGRRYFTVTGEYPNEDV 184 (313)
Q Consensus 107 ~~Lk~l~~~~~~~~~~~~~~~~s-~-~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~yk~~i~Rr~~~v~~~~~s~ee 184 (313)
..|+.|+..+...+..++|+.++ + +.|++++++..|+++|++++.+|+.+|..|...++.++.|+ +.+.+|.+++++
T Consensus 106 ~~lk~l~~~~~~~~~~~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R~-~~i~~~~~~~ee 184 (279)
T 2xhe_B 106 ADLKQIEKENKRAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQ-CRVVEPSLSDDA 184 (279)
T ss_dssp HHHHHHHHHHHTTHHHHCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS-CCSSCCCCSSTT
T ss_pred HHHHHHHHHHHHhhhcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCCCHHH
Confidence 99999998765433333443332 2 66999999999999999999999999999888888887765 456788899999
Q ss_pred HHHHhhCCCCchHHhHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 021349 185 IEKIISDNNGSEEFLTHAIQEHGRGKVLETVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNAS 264 (313)
Q Consensus 185 ie~~ie~g~~~~~~~q~~l~~~~~~q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~ 264 (313)
++.+++.|+ +. .|++ .. ..++...+.++++|+++|.+||++|.||++||.+||.||++||++||+||+||+.|.
T Consensus 185 ~~~~~e~g~-~~-~f~q-~~---~~~~~~~~~~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~ 258 (279)
T 2xhe_B 185 IQKVIEHGT-EG-IFSG-MR---LEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSH 258 (279)
T ss_dssp HHHHHHHC-----------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCC
T ss_pred HHHHHhCCc-hH-HHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999998875 33 3433 11 112345677899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcch
Q 021349 265 HYVKDGTKELKTAKDYQRSNR 285 (313)
Q Consensus 265 ~~v~~g~~~L~kA~~~qk~~r 285 (313)
.||++|..+|.+|.+|||++|
T Consensus 259 ~~v~~~~~~l~kA~~~qk~~R 279 (279)
T 2xhe_B 259 NYVKKATEQVVQARHYQESAR 279 (279)
T ss_dssp CCC------------------
T ss_pred HHHHHHHHHHHHHHHHhHccC
Confidence 999999999999999999876
No 3
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=99.97 E-value=1.3e-30 Score=228.49 Aligned_cols=194 Identities=21% Similarity=0.350 Sum_probs=169.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021349 42 QNLNLFLAEAENVKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRARNIKSHLEDMDRANAANKR 121 (313)
Q Consensus 42 ~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~ei~~~~~~ik~~Lk~l~~~~~~~~~ 121 (313)
+.|+.|++.|++|+..|..|+.++..|..+|.+.+..+++.+...++.+|+.++.+|+++++.|+..|+.|+...
T Consensus 2 ~~~~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~----- 76 (196)
T 1fio_A 2 HDFVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDG----- 76 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----
Confidence 468899999999999999999999999999998776666666568999999999999999999999999998641
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCCChhHHHHHhhCCCCchHHhHH
Q 021349 122 LSGCKEGTPIYRTRIAVTNGLRKKLKELMMEFQGLRQKMMTEYKETVGRRYFTVTGEYPNEDVIEKIISDNNGSEEFLTH 201 (313)
Q Consensus 122 ~~~~~~~s~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~yk~~i~Rr~~~v~~~~~s~eeie~~ie~g~~~~~~~q~ 201 (313)
+..|++++++.+|+++|+++|++|+.+|..|..+||+++.|+|.+ .+|++++++++.++++|. .+.+|++
T Consensus 77 --------~~~r~~k~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~rq~~i-~~~~~~~~e~~~~~~~~~-~~~~f~~ 146 (196)
T 1fio_A 77 --------IHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMI-IQPEATEDEVEAAISDVG-GQQIFSQ 146 (196)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTCCHHHHHHHTSHHH-HHHHHHH
T ss_pred --------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCHHHHHHHHHcCC-chhHHHH
Confidence 125899999999999999999999999999999999999998765 568899999998887543 4678887
Q ss_pred HHHh-hhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021349 202 AIQE-HGRGKVLETVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQG 250 (313)
Q Consensus 202 ~l~~-~~~~q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qg 250 (313)
+++. ++.+++...++++++||++|.+||++|.|||+||.|||.||++||
T Consensus 147 ~~~~~~~~~~~~~~l~~i~eR~~eI~~IE~sI~EL~qiF~Dla~LV~~QG 196 (196)
T 1fio_A 147 ALLNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ 196 (196)
T ss_dssp HTC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7664 345567788999999999999999999999999999999999998
No 4
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=99.95 E-value=1e-27 Score=190.99 Aligned_cols=95 Identities=35% Similarity=0.527 Sum_probs=86.3
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHH
Q 021349 210 KVLETVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQRSNRKWMC 289 (313)
Q Consensus 210 q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c 289 (313)
+++++++++++||++|.+||++|.|||+||.|||.||++||++||+||+|++.|.+||++|+.+|.+|.+|||++|||+|
T Consensus 8 ~a~~~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~ 87 (109)
T 3hd7_B 8 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI 87 (109)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcce
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHH
Q 021349 290 VGIILLLLIILLIVI 304 (313)
Q Consensus 290 ~~~~~~~ii~~ii~~ 304 (313)
|++++++|+++++.+
T Consensus 88 i~l~~~~i~~~i~~~ 102 (109)
T 3hd7_B 88 MIIICCVILGIIIAS 102 (109)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHH
Confidence 888777666555443
No 5
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=99.90 E-value=1.1e-23 Score=191.71 Aligned_cols=247 Identities=23% Similarity=0.380 Sum_probs=175.6
Q ss_pred ccCCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 35 TSTNTMDQNLNLFLAEAENVKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRARNIKSHLEDMDR 114 (313)
Q Consensus 35 ~~~~~~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~ei~~~~~~ik~~Lk~l~~ 114 (313)
+.+.+.+.+|++||..|++|...|..+...+..|..++.+.+... .........++.++.+++.++..++..++.+..
T Consensus 33 ~~~~~~~~~m~ef~~~ve~i~~~i~~i~~~v~el~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~ 110 (279)
T 3c98_B 33 TVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASP--NPDEKTKEELEELMSDIKKTANKVRSKLKSIEQ 110 (279)
T ss_dssp ------CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS--SCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567789999999999999999999999999999998764433 334456788999999999999999999988877
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCCChhHHHHHhhCCCC
Q 021349 115 ANAANKRLSGCKEGTPIYRTRIAVTNGLRKKLKELMMEFQGLRQKMMTEYKETVGRRYFTVTGEYPNEDVIEKIISDNNG 194 (313)
Q Consensus 115 ~~~~~~~~~~~~~~s~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~yk~~i~Rr~~~v~~~~~s~eeie~~ie~g~~ 194 (313)
..... ...+....+.+.+.++.+.|...|..++..|...+..|...+++.+.+.. ...++.+++.+.......+.
T Consensus 111 ~~~~~---~~i~~~~~~i~~~~~qtn~La~n~a~~~a~~~~~~~~~~~vva~evr~la-~~~~~~~~~~~~~~~~~~~~- 185 (279)
T 3c98_B 111 SIEQE---EGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQL-EITGRTTTSEELEDMLESGN- 185 (279)
T ss_dssp HHHHH---HTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTCCCCHHHHHHHHHSCC-
T ss_pred HHHHh---hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhccCccchHHHHHHHhhh-
Confidence 54331 22344567789999999999999999999999999888888888876653 33455565544433333332
Q ss_pred chHHhHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 195 SEEFLTHAIQEHGRGKVLETVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKEL 274 (313)
Q Consensus 195 ~~~~~q~~l~~~~~~q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L 274 (313)
...+... +. .....+...+..+++|+..+..|+.+|.+|+++|.+|+.+|.+||+++++|++||+.+.++|+.|..+|
T Consensus 186 ~~~~~~~-~~-~~~~~~~~~~~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el 263 (279)
T 3c98_B 186 PAIFASG-II-MDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDT 263 (279)
T ss_dssp TTSSTTT-SC-SCSSSTTHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC---
T ss_pred hHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222211 11 112234566889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcchhhHHH
Q 021349 275 KTAKDYQRSNRKWMCV 290 (313)
Q Consensus 275 ~kA~~~qk~~rk~~c~ 290 (313)
.+|.+|++++|||+||
T Consensus 264 ~~A~~~q~~~Rkkk~i 279 (279)
T 3c98_B 264 KKAVKYQSKARRKKIM 279 (279)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHhCcCcC
Confidence 9999999999999885
No 6
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=99.90 E-value=6.4e-24 Score=158.86 Aligned_cols=76 Identities=39% Similarity=0.622 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHH
Q 021349 215 VVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQRSNRKWMCV 290 (313)
Q Consensus 215 l~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c~ 290 (313)
|+++++|+++|.+||++|.||++||.|||.||.+||++||+||+||+.|..||++|..+|.+|.+|++++|||+||
T Consensus 2 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rkk~~i 77 (77)
T 1jth_B 2 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999886
No 7
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.87 E-value=6.5e-22 Score=145.59 Aligned_cols=70 Identities=33% Similarity=0.555 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhH
Q 021349 219 QDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQRSNRKWM 288 (313)
Q Consensus 219 ~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~ 288 (313)
++|+++|.+|+++|.+|++||.|||.||.+||++||+||+||+.|..||++|..+|.+|.+|++++|||+
T Consensus 2 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk~~ 71 (71)
T 2nps_B 2 SMRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRKKM 71 (71)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 4899999999999999999999999999999999999999999999999999999999999999999985
No 8
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=99.85 E-value=1.9e-21 Score=147.32 Aligned_cols=76 Identities=39% Similarity=0.617 Sum_probs=70.4
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 021349 210 KVLETVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQRSNR 285 (313)
Q Consensus 210 q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~r 285 (313)
+++..+.++++|+++|.+|+++|.+|++||.||+.||++||++||+||+||+.|..||++|..+|.+|.+|++++|
T Consensus 8 ~~~~~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~r 83 (83)
T 1sfc_B 8 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 83 (83)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999999876
No 9
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=99.85 E-value=2.5e-21 Score=167.42 Aligned_cols=147 Identities=12% Similarity=0.281 Sum_probs=102.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021349 40 MDQNLNLFLAEAENVKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRARNIKSHLEDMDRANAAN 119 (313)
Q Consensus 40 ~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~ei~~~~~~ik~~Lk~l~~~~~~~ 119 (313)
++++|+.||+.|++|+..|..|..++..|..+|.+++.. +.....++.+|+.++.+|+++++.|+..|+.|+..+..
T Consensus 34 ~~~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~--~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~- 110 (180)
T 1s94_A 34 GGGFMEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSA--PQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQ- 110 (180)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 678999999999999999999999999999999987553 55667889999999999999999999999999987653
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCCChhHHHHHhhCC
Q 021349 120 KRLSGCKEGTPIYRTRIAVTNGLRKKLKELMMEFQGLRQKMMTEYKETVGRRYFTVTGEYPNEDVIEKIISDN 192 (313)
Q Consensus 120 ~~~~~~~~~s~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~yk~~i~Rr~~~v~~~~~s~eeie~~ie~g 192 (313)
.+++++++++.|+|++|+.+|+++|+++|++|+.+|..|+..|+++++|+ +.|.||++|+++|++++++|
T Consensus 111 --~~~~~~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K~~i~Rq-~~I~~~~~teeeie~~ie~G 180 (180)
T 1s94_A 111 --EEHSNKSSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCKARIKRQ-MEITGRTTTNEELEDMLESG 180 (180)
T ss_dssp --TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCCC-------------------------
T ss_pred --hhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCCCHHHHHHHHhCc
Confidence 34556677889999999999999999999999999999999999999876 45679999999999999875
No 10
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.84 E-value=1.4e-20 Score=137.73 Aligned_cols=68 Identities=35% Similarity=0.467 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021349 215 VVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQR 282 (313)
Q Consensus 215 l~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk 282 (313)
++++++|+++|.+|+++|.+|++||.||+.||.+||++||+||+||+.|..||++|..+|.+|.+|||
T Consensus 2 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qr 69 (69)
T 3b5n_B 2 LAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKSAR 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 67899999999999999999999999999999999999999999999999999999999999999985
No 11
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=99.79 E-value=2.2e-19 Score=130.94 Aligned_cols=66 Identities=41% Similarity=0.651 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 213 ETVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAK 278 (313)
Q Consensus 213 ~~l~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 278 (313)
.+++++++|+++|.+|+++|.+|++||.||+.||.+||++||+||+||+.|..||++|..+|.+|.
T Consensus 2 ~~l~~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 2 SALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357899999999999999999999999999999999999999999999999999999999999995
No 12
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.77 E-value=7.6e-19 Score=126.88 Aligned_cols=63 Identities=25% Similarity=0.579 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 217 EIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKD 279 (313)
Q Consensus 217 ~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 279 (313)
++++|+++|.+|+++|.+|++||.||+.||.+||++||+||+||+.|..||++|..+|.+|.+
T Consensus 3 ~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~k 65 (65)
T 1gl2_B 3 HMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAAN 65 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999999999999999999999999999999999864
No 13
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=99.76 E-value=4.2e-17 Score=132.84 Aligned_cols=122 Identities=14% Similarity=0.259 Sum_probs=106.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021349 40 MDQNLNLFLAEAENVKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRARNIKSHLEDMDRANAAN 119 (313)
Q Consensus 40 ~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~ei~~~~~~ik~~Lk~l~~~~~~~ 119 (313)
++++|+.||+.|++|+..|..|...+..|..+|.+.++.+. ..+.++.+++.++.+|+++++.|+..|+.|+..+..
T Consensus 3 ~~~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~--~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~- 79 (127)
T 1ez3_A 3 RDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPN--PDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQ- 79 (127)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 56889999999999999999999999999999998866544 456789999999999999999999999999987653
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 120 KRLSGCKEGTPIYRTRIAVTNGLRKKLKELMMEFQGLRQKMMTEYKE 166 (313)
Q Consensus 120 ~~~~~~~~~s~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~yk~ 166 (313)
.+++++++++.|+|++|+.+|+++|+++|++|+.+|..|+..++.
T Consensus 80 --~~~~~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k~ 124 (127)
T 1ez3_A 80 --EEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKG 124 (127)
T ss_dssp --HHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --hcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777788999999999999999999999999987555444443
No 14
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=7.5e-08 Score=78.43 Aligned_cols=114 Identities=13% Similarity=0.181 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021349 44 LNLFLAEAENVKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRARNIKSHLEDMDRANAANKRLS 123 (313)
Q Consensus 44 ~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~ei~~~~~~ik~~Lk~l~~~~~~~~~~~ 123 (313)
.++|-...+.|...|..|+..+..|+.+.+. ++++.|..+++++|+.+...++.+++.+...|+.|..- .
T Consensus 9 ~~ef~~l~~~is~~I~~In~~vs~l~r~v~~---LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~-------~ 78 (130)
T 2dnx_A 9 LRDFSSIIQTCSGNIQRISQATAQIKNLMSQ---LGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSL-------P 78 (130)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-------C
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------c
Confidence 3468889999999999999999999998754 67888999999999999999999999999999998752 1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021349 124 GCKEGTPIYRTRIAVTNGLRKKLKELMMEFQGLRQKMMTEYKETV 168 (313)
Q Consensus 124 ~~~~~s~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~yk~~i 168 (313)
. .....+.|.++.+...|.++|+.++++|+.+|..+..+.+..+
T Consensus 79 ~-~~~~~~~r~~k~q~~KL~~dF~~~L~~FQ~~Qr~~aekek~~~ 122 (130)
T 2dnx_A 79 L-PLSTSEQRQQRLQKERLMNDFSAALNNFQAVQRRVSEKEKESI 122 (130)
T ss_dssp C-CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 0 0122457899999999999999999999999887766665544
No 15
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.37 E-value=0.0066 Score=47.44 Aligned_cols=89 Identities=13% Similarity=0.162 Sum_probs=71.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHH
Q 021349 212 LETVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQRSNRKWMCVG 291 (313)
Q Consensus 212 ~~~l~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c~~ 291 (313)
++...++.+=++.|.+|..-..++..|..+=+.++..=...++....|++.+...+.+|.+.=++++ +...|++++
T Consensus 17 ~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~r----kk~~i~l~~ 92 (109)
T 3hd7_B 17 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR----RKKIMIIIC 92 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CcceehHHH
Confidence 3445678888889999999999999999999999999999999999999999999999987654443 345666666
Q ss_pred HHHHHHHHHHHHH
Q 021349 292 IILLLLIILLIVI 304 (313)
Q Consensus 292 ~~~~~ii~~ii~~ 304 (313)
++++++|+++++.
T Consensus 93 ~~i~~~i~~~~~~ 105 (109)
T 3hd7_B 93 CVILGIIIASTIG 105 (109)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 5555555666654
No 16
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=97.31 E-value=0.00097 Score=49.54 Aligned_cols=67 Identities=12% Similarity=0.141 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021349 217 EIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQRS 283 (313)
Q Consensus 217 ~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~ 283 (313)
.+++-.+.+..|..+|..|+.|..+|+..|..|..+||.++..++.+...+..+...+.+..+..+.
T Consensus 13 ~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~ 79 (82)
T 2nps_D 13 MGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSD 79 (82)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 4455667899999999999999999999999999999999999999999999999999888775543
No 17
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=97.18 E-value=0.01 Score=44.78 Aligned_cols=42 Identities=7% Similarity=0.100 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 021349 223 DTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNAS 264 (313)
Q Consensus 223 ~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~ 264 (313)
+.+.++...+.|+..+..+=-.-|-+.|+-||.++...+.-.
T Consensus 5 d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~ 46 (91)
T 3hd7_A 5 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQ 46 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 456777888888888887777778889998888877665433
No 18
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=97.18 E-value=0.0039 Score=44.14 Aligned_cols=57 Identities=14% Similarity=0.281 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 220 DRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKT 276 (313)
Q Consensus 220 ~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~k 276 (313)
+-.+.+..|...+..|+.|-.+|+..|..|..+||+|+..++.+...+..+...+.+
T Consensus 7 eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ 63 (66)
T 1n7s_D 7 EMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 445678999999999999999999999999999999999999999999999888765
No 19
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=97.11 E-value=0.0019 Score=45.62 Aligned_cols=58 Identities=14% Similarity=0.245 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 219 QDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKT 276 (313)
Q Consensus 219 ~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~k 276 (313)
++-.+.+..|..++..|+.|-.+|+..|..|..+||+++..++.+...+..+...+.+
T Consensus 5 ~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~ 62 (65)
T 1gl2_D 5 QEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTL 62 (65)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788999999999999999999999999999999999999999999998887754
No 20
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=96.99 E-value=0.0068 Score=46.32 Aligned_cols=86 Identities=16% Similarity=0.148 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCHH
Q 021349 53 NVKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKIN-KDVVTVLKRARNIKSHLEDMDRANAANKRLSGCKEGTPI 131 (313)
Q Consensus 53 ~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~-~l~~ei~~~~~~ik~~Lk~l~~~~~~~~~~~~~~~~s~~ 131 (313)
+...-|..+...++.|+.+..+ +++..|...++..|+ .++..++.+.+.+. .+..+
T Consensus 7 d~~~li~t~s~niq~l~k~~~q---lGTkrD~~~LR~~l~~~l~~~~~~L~k~~~-~l~~l------------------- 63 (97)
T 1hs7_A 7 ELSNLIETFAEQSRVLEKECTK---IGSKRDSKELRYKIETELIPNCTSVRDKIE-SNILI------------------- 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---TTSSSCCHHHHHHHHHTHHHHHHHHHHHHH-HSTHH-------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHH---hCCCcchHHHHHHHHHHHHHHHHHHHHHHH-Hhccc-------------------
Confidence 3444555556666666666543 688899999999999 99988888888877 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 132 YRTRIAVTNGLRKKLKELMMEFQGLRQKMMTEYKE 166 (313)
Q Consensus 132 ~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~yk~ 166 (313)
.+...|.++|..+.+.|+.+|..|..+.++
T Consensus 64 -----~qkeRL~~dF~~l~~~fQ~~qr~y~ek~~e 93 (97)
T 1hs7_A 64 -----HQNGKLSADFKNLKTKYQSLQQSYNQRKSL 93 (97)
T ss_dssp -----HHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----chhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 046778899999999999998766555443
No 21
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=96.94 E-value=0.0073 Score=45.24 Aligned_cols=58 Identities=14% Similarity=0.280 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 219 QDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKT 276 (313)
Q Consensus 219 ~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~k 276 (313)
.+-.+.+..|...+..|+.|..+|+..|..|..+||+|+..++.+...+..++..+.+
T Consensus 25 ~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ 82 (87)
T 1sfc_D 25 NEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3556779999999999999999999999999999999999999999999999888765
No 22
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=96.58 E-value=0.0085 Score=44.92 Aligned_cols=57 Identities=19% Similarity=0.339 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 220 DRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKT 276 (313)
Q Consensus 220 ~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~k 276 (313)
+-.+.+..|...+..|+.|-.+|+..+..|.++||+|+..++.+...+..+++.+.+
T Consensus 27 eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~k 83 (87)
T 1l4a_D 27 DMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATK 83 (87)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778999999999999999999999999999999999999999999999888765
No 23
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.023 Score=39.97 Aligned_cols=57 Identities=14% Similarity=0.211 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 220 DRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKT 276 (313)
Q Consensus 220 ~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~k 276 (313)
+-.+.+..|...+.-|+.|-..|+..|..|.++||+|+..++.+...+..+++.|.+
T Consensus 7 e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~ 63 (64)
T 3b5n_D 7 EIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345668889999999999999999999999999999999999999999999887753
No 24
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=94.70 E-value=0.25 Score=33.35 Aligned_cols=44 Identities=20% Similarity=0.301 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 232 LLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELK 275 (313)
Q Consensus 232 i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~ 275 (313)
+.|-.++-......+..||+.|++|+.++..+..++..|.+.|.
T Consensus 9 ~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~ 52 (54)
T 1nhl_A 9 AIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLT 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 44444555566677889999999999999999999999988774
No 25
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=94.14 E-value=0.005 Score=48.95 Aligned_cols=39 Identities=8% Similarity=0.118 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 021349 224 TAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMN 262 (313)
Q Consensus 224 ~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~ 262 (313)
.+.++...+.|+..+..+==.-|-+.|+-||.++...+.
T Consensus 34 ~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~ 72 (119)
T 2kog_A 34 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADA 72 (119)
T ss_dssp HHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 455666667777776666666677888888877765443
No 26
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=93.14 E-value=1.5 Score=31.89 Aligned_cols=52 Identities=25% Similarity=0.376 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 225 AKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKT 276 (313)
Q Consensus 225 i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~k 276 (313)
+++-.+-+.|-.++-......++.||+.|++++.++..+..++..|.+.|..
T Consensus 25 ~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~ 76 (79)
T 1n7s_C 25 TRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKD 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhh
Confidence 4444455556666666777788999999999999999999999999988753
No 27
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=93.13 E-value=0.54 Score=37.64 Aligned_cols=99 Identities=17% Similarity=0.197 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021349 44 LNLFLAEAENVKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRARNIKSHLEDMDRANAANKRLS 123 (313)
Q Consensus 44 ~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~ei~~~~~~ik~~Lk~l~~~~~~~~~~~ 123 (313)
...||...++|...|..++........+.... .++. +.+++.+..++...+..+...|++|.+.+.-....|
T Consensus 26 ~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~---~~~s-----~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np 97 (130)
T 4dnd_A 26 EDPFFVVRGEVQKAVNTARGLYQRWCELLQES---AAVG-----REELDWTTNELRNGLRSIEWDLEDLEETIGIVEANP 97 (130)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHhhccC---CCcc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 34699999999999999999988876654321 1111 345667778888888888888888887654321111
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 021349 124 -GCKEGTPIYRTRIAVTNGLRKKLKELM 150 (313)
Q Consensus 124 -~~~~~s~~~rir~~~~~~L~~~f~~~~ 150 (313)
..+-+..+..-|+..+..+...+.++-
T Consensus 98 ~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk 125 (130)
T 4dnd_A 98 GKFKLPAGDLQERKVFVERMREAVQEMK 125 (130)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 112223455567777777776665543
No 28
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=91.94 E-value=1.4 Score=31.33 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=31.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 244 VMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDY 280 (313)
Q Consensus 244 ~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~ 280 (313)
.++..||+.|++||.|++.+..+...|...|..=..+
T Consensus 33 ~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~~ 69 (70)
T 3b5n_C 33 GMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKKL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3567999999999999999999999998888654443
No 29
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=91.00 E-value=3.8 Score=30.48 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 021349 214 TVVEIQDRHDTAKEIEKSLLELH 236 (313)
Q Consensus 214 ~l~~i~~R~~~i~~ie~~i~el~ 236 (313)
.++.+-+|.+.+..|...-.+|.
T Consensus 24 NI~kvL~RgekL~~L~~kt~~L~ 46 (91)
T 3hd7_A 24 NVDKVLERDQKLSELDDRADALQ 46 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHHH
Confidence 34455555555555555444444
No 30
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=86.87 E-value=2.9 Score=30.69 Aligned_cols=41 Identities=34% Similarity=0.457 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 234 ELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKEL 274 (313)
Q Consensus 234 el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L 274 (313)
+..+.-..=..++..||+.|++|+.+++....+...|.+.|
T Consensus 38 es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L 78 (83)
T 1l4a_C 38 ESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNL 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344555678999999999999999988887776544
No 31
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=78.60 E-value=14 Score=25.51 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 227 EIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELK 275 (313)
Q Consensus 227 ~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~ 275 (313)
+-.+-+.|--++-..+..-+..|+|.|.+....+..+..++..|..-|.
T Consensus 13 ~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~ 61 (65)
T 1gl2_C 13 RSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILR 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHH
Confidence 3334445555556667777799999999999999999999999987764
No 32
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=78.25 E-value=15 Score=25.68 Aligned_cols=65 Identities=15% Similarity=0.224 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 215 VVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKD 279 (313)
Q Consensus 215 l~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 279 (313)
-.++.+-...|..|..-..+|..|..+=+.+|..=...++....||+.+...+.+|...-.++++
T Consensus 5 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk 69 (71)
T 2nps_B 5 ETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRK 69 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34566777888888888999999999999999999999999999999999999999887655543
No 33
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=73.80 E-value=23 Score=25.75 Aligned_cols=61 Identities=18% Similarity=0.247 Sum_probs=36.9
Q ss_pred chHHhHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 021349 195 SEEFLTHAIQEHGRGKVLETVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDI 256 (313)
Q Consensus 195 ~~~~~q~~l~~~~~~q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~I 256 (313)
++++++. +.+.++..+..++.+-+.=|+.|..+...|..|.+.-..|..|...=.-|-+-|
T Consensus 18 se~YWk~-lAE~Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la~~i 78 (83)
T 1wlq_A 18 SSQYWKE-VAEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVI 78 (83)
T ss_dssp TCTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred cHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677764 444444445566766666677777777777777766666666655444444333
No 34
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=73.24 E-value=22 Score=25.18 Aligned_cols=66 Identities=14% Similarity=0.167 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 214 TVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKD 279 (313)
Q Consensus 214 ~l~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 279 (313)
.-.++.+=...|.+|..-..+|..|..+=+.+|..=...++....||+.+...+.+|...-.++++
T Consensus 8 R~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rk 73 (77)
T 1jth_B 8 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARR 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 345666777778888888888888888888888888888888888888888888888876665544
No 35
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=71.20 E-value=22 Score=24.47 Aligned_cols=55 Identities=13% Similarity=0.189 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 021349 216 VEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDG 270 (313)
Q Consensus 216 ~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g 270 (313)
.++.+-...|..|..=..+|..|..+=+.+|..=...++....|++.+...+.+|
T Consensus 12 ~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA 66 (68)
T 1n7s_B 12 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666666666666666666666666666666666666666555
No 36
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=66.73 E-value=38 Score=28.82 Aligned_cols=72 Identities=15% Similarity=0.171 Sum_probs=45.9
Q ss_pred chHHhHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 021349 195 SEEFLTHAIQEHGRGKVLETVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYV 267 (313)
Q Consensus 195 ~~~~~q~~l~~~~~~q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v 267 (313)
+++||+. +.+.++..+..+|.+-+.=|.+|..++..|..|.++-..|..|+..=..+.+-|+.=+.....+.
T Consensus 95 se~YWk~-lAE~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~~~~~~~ 166 (209)
T 2wvr_A 95 SSQYWKE-VAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNF 166 (209)
T ss_dssp CTTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred cHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 5778874 55555555567788878888888888877777777777777777666666666655444444433
No 37
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=66.27 E-value=30 Score=23.94 Aligned_cols=57 Identities=11% Similarity=0.211 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 021349 216 VEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTK 272 (313)
Q Consensus 216 ~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~ 272 (313)
.++.+-...|..|..=..+|..|..+=+.+|..=...++....|++.+...+.+|.+
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (69)
T 3b5n_B 10 QELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVK 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666666666666666666666666666666666666666666654
No 38
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=64.98 E-value=30 Score=23.61 Aligned_cols=56 Identities=13% Similarity=0.240 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 021349 216 VEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGT 271 (313)
Q Consensus 216 ~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~ 271 (313)
.++..-...|..|..=..+|..|..+=+.+|..=...++....|++.+...+.+|.
T Consensus 9 ~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 64 (65)
T 1gl2_B 9 SSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAA 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455556666666666667777777777776666667777777777766666654
No 39
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=64.07 E-value=39 Score=24.56 Aligned_cols=53 Identities=17% Similarity=0.291 Sum_probs=42.5
Q ss_pred chHHhHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 195 SEEFLTHAIQEHGRGKVLETVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEA 248 (313)
Q Consensus 195 ~~~~~q~~l~~~~~~q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~ 248 (313)
++++++. +.+.++..+..+|.+-+.=|+.|..++..|..+.++...+..|+..
T Consensus 26 se~YWk~-lAE~RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 26 SSQYWKE-VAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677764 5555555567788888999999999999999999999999888864
No 40
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=62.47 E-value=1.2e+02 Score=29.59 Aligned_cols=26 Identities=12% Similarity=0.225 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 137 AVTNGLRKKLKELMMEFQGLRQKMMT 162 (313)
Q Consensus 137 ~~~~~L~~~f~~~~~~fq~~q~~~~~ 162 (313)
+++..|...+.+...+-++++.++..
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666655533
No 41
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=54.31 E-value=57 Score=23.33 Aligned_cols=62 Identities=13% Similarity=0.150 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 213 ETVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKEL 274 (313)
Q Consensus 213 ~~l~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L 274 (313)
....++.+-...|..|..=..+|..|..+=+.+|..=...++....||+.+...+.+|...-
T Consensus 18 eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~q 79 (83)
T 1sfc_B 18 TRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQ 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556777778888888888888888888888888888888888888888888888887643
No 42
>3n27_A Fusion glycoprotein F0, linker, fusion glycoprote; fusion protein, chimera protein, fusion inhibitor, antivirus viral protein; HET: CIT; 1.80A {Hendravirus}
Probab=53.29 E-value=47 Score=23.88 Aligned_cols=61 Identities=8% Similarity=0.174 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 218 IQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDY 280 (313)
Q Consensus 218 i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~ 280 (313)
++.-++.|.+|..+...+.-..+-+-.-|..+|.+ .|.-|+..|....+.....|+|+...
T Consensus 15 Iq~TN~AV~eL~~a~~~t~iAIqaIQd~IN~~~~~--dis~~l~~a~~~l~~sk~~~~~~~~~ 75 (80)
T 3n27_A 15 IESTNEAVVKLQETAEKTVYVLTALQDYSGGSGGI--DISIELNKAKSDLEESKEWIRRSNQK 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCC-----CH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--chhhhHhHHHhhHHHHHHHHHHHHHH
Confidence 45666667777766666666666666666667665 57788889999999999999888654
No 43
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=51.21 E-value=72 Score=23.62 Aligned_cols=40 Identities=8% Similarity=0.113 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 021349 223 DTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMN 262 (313)
Q Consensus 223 ~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~ 262 (313)
..|.++...+.++..+..+=-.-|.+.|+-||.++...+.
T Consensus 30 d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~ 69 (96)
T 1sfc_A 30 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADA 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4567777788888888877777788999999888776555
No 44
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=46.56 E-value=77 Score=22.63 Aligned_cols=56 Identities=11% Similarity=0.062 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 224 TAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKD 279 (313)
Q Consensus 224 ~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 279 (313)
.|.+-..-+.|=-++-..+..-+..|.|.|.+....+..+..++..+...|..=.+
T Consensus 20 ~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~r 75 (81)
T 2nps_C 20 RLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLR 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Confidence 34455555556666666777778999999999999999999999999988865443
No 45
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=46.48 E-value=16 Score=31.48 Aligned_cols=222 Identities=14% Similarity=0.138 Sum_probs=103.5
Q ss_pred CchhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 40 MDQNLN---LFLAEAENVKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRARNIKSHLEDMDRAN 116 (313)
Q Consensus 40 ~~~~~~---~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~ei~~~~~~ik~~Lk~l~~~~ 116 (313)
.+.++. ..-..++.|...+..+......+...... ..........+...+..+...+......+....+......
T Consensus 42 m~ef~~~ve~i~~~i~~i~~~v~el~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~i~ 119 (279)
T 3c98_B 42 MDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNP--DEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLN 119 (279)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC--CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 444444 45566777777777777766654322111 1111123345566677777777776666666555433211
Q ss_pred ---HHhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------hccccCCCCChhHHH
Q 021349 117 ---AANKRLSGCKEGTPIYRTRIAVTNGLRKKLKELMMEFQGLRQKMMTEYKETVGRR-------YFTVTGEYPNEDVIE 186 (313)
Q Consensus 117 ---~~~~~~~~~~~~s~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~yk~~i~Rr-------~~~v~~~~~s~eeie 186 (313)
...+... .-...+. .-......+|.+.-..|..+.........+....- ...+.+ .+.....
T Consensus 120 ~~~~~i~~~~-----~qtn~La-~n~a~~~a~~~~~~~~~~~vva~evr~la~~~~~~~~~~~~~~~~~~~--~~~~~~~ 191 (279)
T 3c98_B 120 RSSADLRIRK-----TQHSTLS-RKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESG--NPAIFAS 191 (279)
T ss_dssp CCSHHHHHHH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHSC--CTTSSTT
T ss_pred cchHHHHHHH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHhh--hhHHHHH
Confidence 0000000 0011121 22345666777777777744322222222222110 000111 0010011
Q ss_pred HHhhCCCCchHHhHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 021349 187 KIISDNNGSEEFLTHAIQEHGRGKVLETVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHY 266 (313)
Q Consensus 187 ~~ie~g~~~~~~~q~~l~~~~~~q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~ 266 (313)
. +..+. .. ....+ ..+......+.+-...|..|...+.+|..+..+-+..+.+=...+..+-.++..+...
T Consensus 192 ~-~~~~~--~~-~~~~~-----~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~e 262 (279)
T 3c98_B 192 G-IIMDS--SI-SKQAL-----SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSD 262 (279)
T ss_dssp T-SCSCS--SS-TTHHH-----HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC--
T ss_pred H-HHHHH--HH-HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11111 11 11111 1122334456666777888888888889999998888888788888898999999999
Q ss_pred HHHHHHHHHHHHHH
Q 021349 267 VKDGTKELKTAKDY 280 (313)
Q Consensus 267 v~~g~~~L~kA~~~ 280 (313)
+.+|...-.++++.
T Consensus 263 l~~A~~~q~~~Rkk 276 (279)
T 3c98_B 263 TKKAVKYQSKARRK 276 (279)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHhCc
Confidence 99998877776654
No 46
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=43.57 E-value=75 Score=22.63 Aligned_cols=48 Identities=8% Similarity=-0.040 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 021349 223 DTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDG 270 (313)
Q Consensus 223 ~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g 270 (313)
..|..||..+.-.-....+|+..|..|...||+....+..-...+...
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356677777777778888888889999999999988887776665543
No 47
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=41.10 E-value=12 Score=27.21 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 251 EQMDDIEHHVMNASHYVKDGTKELKTAKDYQ 281 (313)
Q Consensus 251 e~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q 281 (313)
.|.|.+++-++...+.+..+..-|..|.+--
T Consensus 13 ~~~d~~~~~~e~~~~f~kd~~rvlk~~~KPd 43 (80)
T 2ww9_B 13 QSNNQVEKLVEAPVEFVREGTQFLAKCKKPD 43 (80)
T ss_dssp --------CCHHHHHHHHHHHHHHHSCCCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4567778888888888888888887775443
No 48
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=39.93 E-value=1.1e+02 Score=22.55 Aligned_cols=87 Identities=15% Similarity=0.242 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 021349 45 NLFLAEAENVKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRARNIKSHLEDMDRANAANKRLSG 124 (313)
Q Consensus 45 ~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~ei~~~~~~ik~~Lk~l~~~~~~~~~~~~ 124 (313)
..|+...+++...|..+...+.. + ...++ +..+..+.....++......+...|.-+++.
T Consensus 6 DPF~~V~~D~~~ql~~l~~~~~~----~---~~~~~----~~~~~El~~~l~el~e~l~DL~~SI~i~e~~--------- 65 (95)
T 2c5k_T 6 DPFQQVVKDTKEQLNRINNYITR----H---NTAGD----DDQEEEIQDILKDVEETIVDLDRSIIVMKRD--------- 65 (95)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH----T---CCC------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS---------
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH----c---cCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---------
Confidence 36889999999999988888554 1 11111 1223344444444444444444444443321
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 125 CKEGTPIYRTRIAVTNGLRKKLKELMMEFQ 154 (313)
Q Consensus 125 ~~~~s~~~rir~~~~~~L~~~f~~~~~~fq 154 (313)
...+..-|+..+..+.+++..+-..++
T Consensus 66 ---~~~EI~~Rk~~v~~l~~~i~~lk~~~~ 92 (95)
T 2c5k_T 66 ---ENEDVSGREAQVKNIKQQLDALKLRFD 92 (95)
T ss_dssp ---TTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 223456688888888888776666554
No 49
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=36.36 E-value=2.7e+02 Score=25.94 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021349 52 ENVKKEMEEIRDVLGRLQEANE 73 (313)
Q Consensus 52 ~~I~~~I~~i~~~i~~L~~l~~ 73 (313)
..+...|+.|+..+..+++.+.
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~ 84 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSK 84 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhh
Confidence 5667777777777777766665
No 50
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=35.24 E-value=1.4e+02 Score=23.13 Aligned_cols=49 Identities=10% Similarity=0.149 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHHHHHHH
Q 021349 54 VKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRA 102 (313)
Q Consensus 54 I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~ei~~~~ 102 (313)
.+.+|..+++.++.++........-.+..-...+.++++.++.+|.++-
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk 56 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLR 56 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777666555444444444444456666666666555443
No 51
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=34.38 E-value=1.6e+02 Score=22.85 Aligned_cols=43 Identities=19% Similarity=0.142 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 021349 224 TAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKD 269 (313)
Q Consensus 224 ~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~ 269 (313)
+|..|.....-|...|.+++ .+|.+.+|+|-..+..+..-|+.
T Consensus 51 ~LsaIk~ry~~L~~q~~~ia---aeQke~~d~ir~tL~~tm~miQ~ 93 (123)
T 4aj5_K 51 ELSVIKSRYQTLYARFKPVA---VEQKESKSRICATVKKTMNMIQK 93 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444556677777665 58999999999888776665554
No 52
>2lti_A Astexin1; sidechain-TO-backbone LINK, lasso peptide, antimic protein; NMR {Asticcacaulis excentricus}
Probab=33.75 E-value=16 Score=19.95 Aligned_cols=13 Identities=38% Similarity=0.652 Sum_probs=10.0
Q ss_pred hcCCCCCCccccc
Q 021349 23 LEAGPDPDLEMTT 35 (313)
Q Consensus 23 ~~~~~~~~~~~~~ 35 (313)
|..|+|||+-+|-
T Consensus 2 lsqgvepdigqty 14 (26)
T 2lti_A 2 LSQGVEPDIGQTY 14 (26)
T ss_dssp CSSSSSCCBBTTB
T ss_pred cccccCCCcchhh
Confidence 4579999998754
No 53
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=32.85 E-value=1.4e+02 Score=21.47 Aligned_cols=40 Identities=18% Similarity=0.345 Sum_probs=19.8
Q ss_pred chHHhHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 021349 195 SEEFLTHAIQEHGRGKVLETVVEIQDRHDTAKEIEKSLLEL 235 (313)
Q Consensus 195 ~~~~~q~~l~~~~~~q~~~~l~~i~~R~~~i~~ie~~i~el 235 (313)
++++++. +.+.++..+..+|.+-+.=|.+|......|..|
T Consensus 14 se~YWk~-lAE~RR~AL~eaL~EN~~Lh~~ie~~~eEi~~L 53 (79)
T 2zxx_A 14 SSQYWKE-VAEQRRKALYEALKENEKLHKEIEQKDSEIARL 53 (79)
T ss_dssp TCTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667764 444444444455555444555554444444333
No 54
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=32.15 E-value=1.1e+02 Score=21.24 Aligned_cols=38 Identities=16% Similarity=0.347 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 021349 225 AKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMN 262 (313)
Q Consensus 225 i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~ 262 (313)
|.++...+.|+..+..+=-.-|-+.|+-||.+....+.
T Consensus 10 l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~ 47 (74)
T 2nps_A 10 IKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSES 47 (74)
T ss_dssp SHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34455556666665555555566778877777655444
No 55
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=27.58 E-value=1.8e+02 Score=21.25 Aligned_cols=28 Identities=7% Similarity=0.150 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 43 NLNLFLAEAENVKKEMEEIRDVLGRLQE 70 (313)
Q Consensus 43 ~~~~f~~~v~~I~~~I~~i~~~i~~L~~ 70 (313)
-+..|++.|..+...-..+...+..+..
T Consensus 17 RlAsyIdKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 17 RFANLIDKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3557888888888888888887766654
No 56
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=26.82 E-value=1.3e+02 Score=19.28 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 137 AVTNGLRKKLKELMMEFQGLRQKM 160 (313)
Q Consensus 137 ~~~~~L~~~f~~~~~~fq~~q~~~ 160 (313)
+.+..|..+|..++-+|.+.|.+.
T Consensus 12 ~~ld~LqTr~ArLlae~~ssq~Kl 35 (46)
T 3swy_A 12 SSLDTLQTRFARLLAEYNATQMKM 35 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788899999999999876543
No 57
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=26.16 E-value=2.1e+02 Score=21.62 Aligned_cols=48 Identities=21% Similarity=0.138 Sum_probs=26.9
Q ss_pred cCchhHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhhhhcCChHHHHH
Q 021349 39 TMDQNLNLFLAEAENVKKEME---------EIRDVLGRLQEANEQSKSLHKPEALKL 86 (313)
Q Consensus 39 ~~~~~~~~f~~~v~~I~~~I~---------~i~~~i~~L~~l~~~~~~~~~~~~~~~ 86 (313)
..+.+...|-..+..|...|. .+...|..|+...........+-+...
T Consensus 32 ~~~~F~~~F~~~~~~Ie~~l~~~~~~~~ld~i~~~I~~Lqk~v~das~fLp~YD~R~ 88 (111)
T 2l3l_A 32 NSHFFVATFARERAAVEELLERAESVERLEEAASRLQGLQKLINDSVFFLAAYDLRQ 88 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHSTTTSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHhhhccHHHHHH
Confidence 355666667676777766644 444455555555555545555555433
No 58
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=24.42 E-value=4.3e+02 Score=24.55 Aligned_cols=28 Identities=11% Similarity=0.210 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 87 LRHKINKDVVTVLKRARNIKSHLEDMDR 114 (313)
Q Consensus 87 l~~~i~~l~~ei~~~~~~ik~~Lk~l~~ 114 (313)
++.-|......+...+..+++.|..+++
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~s~ 81 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQK 81 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 4444444445555555555555555443
No 59
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=23.46 E-value=53 Score=21.56 Aligned_cols=10 Identities=30% Similarity=0.630 Sum_probs=4.1
Q ss_pred hhHHHHHHHH
Q 021349 286 KWMCVGIILL 295 (313)
Q Consensus 286 k~~c~~~~~~ 295 (313)
||-++.++++
T Consensus 33 k~gt~~~~~~ 42 (51)
T 1m56_D 33 TWAAVVIVAA 42 (51)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444443333
No 60
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=22.98 E-value=5e+02 Score=24.77 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=32.4
Q ss_pred hhhcCCCCCCccccccCCcCchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 021349 21 KDLEAGPDPDLEMTTSTNTMDQNLNLFLAEA-ENVKKEMEEIRDVLGRLQEAN 72 (313)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v-~~I~~~I~~i~~~i~~L~~l~ 72 (313)
.|+.+-|.||-.....=. +.=.+.+||... ..|+..|..|+..++.|....
T Consensus 65 ~~a~~c~~~~~~~G~~CP-TtC~l~D~L~k~q~~V~~~LqeLe~~l~~lsn~T 116 (464)
T 1m1j_B 65 PDAGGCKHPLDELGVLCP-TGCELQTTLLKQEKTVKPVLRDLKDRVAKFSDTS 116 (464)
T ss_dssp CCCSCEECSSTTTCEEEE-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccccCCCccCcCC-CccHHHHHHHHhhhhhHhHHHHHHHHHHHHhhhh
Confidence 455555555544433322 334566666555 449999999999999987654
No 61
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=20.87 E-value=1.7e+02 Score=20.64 Aligned_cols=24 Identities=17% Similarity=0.513 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021349 137 AVTNGLRKKLKELMMEFQGLRQKM 160 (313)
Q Consensus 137 ~~~~~L~~~f~~~~~~fq~~q~~~ 160 (313)
+.+..|..+|..++-+|.+.|.+.
T Consensus 14 ~sld~LQTrfARLLaEy~ssQ~KL 37 (74)
T 3swf_A 14 SSVDLLQTRFARILAEYESMQQKL 37 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557888999999999999986544
Done!