BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021351
         (313 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
           Protein
          Length = 72

 Score = 38.9 bits (89), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 2/47 (4%)

Query: 93  VPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139
           V WT +E  LF  GL K G+  W  IS+  + +RT  QV S+A++YF
Sbjct: 10  VKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYF 54


>pdb|1W0U|A Chain A, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna.
 pdb|1W0U|B Chain B, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna
          Length = 55

 Score = 33.1 bits (74), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 95  WTEDEHRLFLLGLQKVGKGDWRGISRNF 122
           WT +E      G+QK G+G+W  IS+N+
Sbjct: 5   WTVEESEWVKAGVQKYGEGNWAAISKNY 32


>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2
          Length = 64

 Score = 32.7 bits (73), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 95  WTEDEHRLFLLGLQKVGKGDWRGISRNF 122
           WT +E      G+QK G+G+W  IS+N+
Sbjct: 14  WTVEESEWVKAGVQKYGEGNWAAISKNY 41


>pdb|1VFC|A Chain A, Solution Structure Of The Dna Complex Of Human Trf2
          Length = 63

 Score = 32.7 bits (73), Expect = 0.30,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 95  WTEDEHRLFLLGLQKVGKGDWRGISRNF 122
           WT +E      G+QK G+G+W  IS+N+
Sbjct: 13  WTVEESEWVKAGVQKYGEGNWAAISKNY 40


>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
 pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
          Length = 64

 Score = 32.3 bits (72), Expect = 0.31,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 95  WTEDEHRLFLLGLQKVGKGDWRGISRNF 122
           WT +E      G+QK G+G+W  IS+N+
Sbjct: 14  WTVEESEWVKAGVQKYGEGNWAAISKNY 41


>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
          Length = 67

 Score = 32.3 bits (72), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 95  WTEDEHRLFLLGLQKVGKGDWRGISRNF 122
           WT +E      G+QK G+G+W  IS+N+
Sbjct: 17  WTVEESEWVKAGVQKYGEGNWAAISKNY 44


>pdb|1X41|A Chain A, Solution Structure Of The Myb-Like Dna Binding Domain Of
           Human Transcriptional Adaptor 2-Like, Isoform B
          Length = 60

 Score = 29.3 bits (64), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 95  WTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139
           WT  E    L  +   G G+W+ ++ N + T+T  +   H  KYF
Sbjct: 11  WTAQEEMALLEAVMDCGFGNWQDVA-NQMCTKTKEECEKHYMKYF 54


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.128    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,849,657
Number of Sequences: 62578
Number of extensions: 295292
Number of successful extensions: 609
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 604
Number of HSP's gapped (non-prelim): 7
length of query: 313
length of database: 14,973,337
effective HSP length: 99
effective length of query: 214
effective length of database: 8,778,115
effective search space: 1878516610
effective search space used: 1878516610
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)