Query 021351
Match_columns 313
No_of_seqs 211 out of 560
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 16:22:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021351.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021351hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cu7_A KIAA1915 protein; nucle 99.7 1.4E-16 4.9E-21 119.8 8.4 66 89-156 6-71 (72)
2 2yus_A SWI/SNF-related matrix- 99.6 7.1E-16 2.4E-20 119.6 4.1 48 91-140 17-64 (79)
3 2yum_A ZZZ3 protein, zinc fing 99.6 1.9E-15 6.5E-20 113.9 5.6 55 89-144 5-64 (75)
4 2elk_A SPCC24B10.08C protein; 99.6 4.2E-15 1.5E-19 108.2 6.3 48 92-140 9-57 (58)
5 1x41_A Transcriptional adaptor 99.5 7.8E-15 2.7E-19 107.1 5.6 50 91-141 7-56 (60)
6 2eqr_A N-COR1, N-COR, nuclear 99.5 7.4E-14 2.5E-18 102.7 6.8 55 84-143 4-58 (61)
7 1guu_A C-MYB, MYB proto-oncoge 99.5 8E-14 2.7E-18 98.2 6.5 47 92-139 3-49 (52)
8 1gvd_A MYB proto-oncogene prot 99.4 1.2E-13 4.1E-18 97.5 5.5 47 92-139 3-49 (52)
9 2d9a_A B-MYB, MYB-related prot 99.4 3.5E-13 1.2E-17 97.6 6.1 49 90-139 6-54 (60)
10 1ity_A TRF1; helix-turn-helix, 99.4 9.9E-13 3.4E-17 98.0 7.3 54 87-141 5-60 (69)
11 2dim_A Cell division cycle 5-l 99.4 9.5E-13 3.2E-17 98.1 6.2 51 89-140 6-56 (70)
12 1w0t_A Telomeric repeat bindin 99.3 1.5E-12 5.2E-17 92.5 6.6 47 92-139 2-50 (53)
13 2yqk_A Arginine-glutamic acid 99.3 2.7E-12 9.2E-17 95.3 7.2 54 86-143 3-56 (63)
14 3sjm_A Telomeric repeat-bindin 99.3 3.4E-12 1.2E-16 95.1 6.8 48 91-139 10-59 (64)
15 2iw5_B Protein corest, REST co 99.3 2.5E-12 8.5E-17 117.9 4.5 51 89-141 130-180 (235)
16 2din_A Cell division cycle 5-l 99.2 1.7E-11 5.7E-16 90.4 7.3 52 90-144 7-58 (66)
17 1irz_A ARR10-B; helix-turn-hel 99.2 2.3E-11 7.8E-16 92.2 7.1 56 88-145 3-63 (64)
18 2xag_B REST corepressor 1; ami 99.2 7E-12 2.4E-16 124.4 4.7 51 90-142 378-428 (482)
19 2ltp_A Nuclear receptor corepr 98.8 1.5E-12 5.2E-17 102.1 0.0 50 91-142 15-64 (89)
20 2cqr_A RSGI RUH-043, DNAJ homo 99.2 1.8E-11 6.3E-16 94.0 5.8 50 89-139 15-67 (73)
21 2crg_A Metastasis associated p 99.2 6E-11 2.1E-15 89.9 7.5 52 89-144 5-56 (70)
22 1gv2_A C-MYB, MYB proto-oncoge 99.2 2.6E-11 9E-16 95.5 5.6 47 92-139 4-50 (105)
23 2k9n_A MYB24; R2R3 domain, DNA 99.1 4.6E-11 1.6E-15 95.1 5.7 46 93-139 2-47 (107)
24 3osg_A MYB21; transcription-DN 99.1 9.7E-11 3.3E-15 95.8 6.6 51 87-139 6-56 (126)
25 2ckx_A NGTRF1, telomere bindin 99.1 1.8E-10 6.2E-15 90.4 7.8 50 94-143 2-54 (83)
26 3zqc_A MYB3; transcription-DNA 99.1 9.2E-11 3.2E-15 96.3 5.6 46 93-139 3-48 (131)
27 1h8a_C AMV V-MYB, MYB transfor 99.1 1.5E-10 5E-15 94.4 6.1 48 91-139 26-73 (128)
28 2cjj_A Radialis; plant develop 99.1 2.1E-10 7E-15 91.8 6.4 51 93-144 9-62 (93)
29 2k9n_A MYB24; R2R3 domain, DNA 99.1 3.3E-10 1.1E-14 90.1 7.4 52 91-144 52-103 (107)
30 2aje_A Telomere repeat-binding 99.1 2.8E-10 9.7E-15 93.0 7.1 56 87-142 8-66 (105)
31 2roh_A RTBP1, telomere binding 99.0 6.1E-10 2.1E-14 93.3 7.8 57 87-143 26-85 (122)
32 1wgx_A KIAA1903 protein; MYB D 99.0 2.2E-10 7.7E-15 88.6 4.0 45 93-138 9-56 (73)
33 1gv2_A C-MYB, MYB proto-oncoge 99.0 5E-10 1.7E-14 88.1 5.6 47 91-139 55-101 (105)
34 2juh_A Telomere binding protei 99.0 7.3E-10 2.5E-14 92.7 6.7 57 87-143 12-71 (121)
35 3osg_A MYB21; transcription-DN 99.0 8.3E-10 2.8E-14 90.3 7.0 52 90-143 60-111 (126)
36 2llk_A Cyclin-D-binding MYB-li 98.9 1.3E-09 4.5E-14 83.7 5.7 45 89-136 20-64 (73)
37 4a69_C Nuclear receptor corepr 98.9 9E-10 3.1E-14 87.8 4.6 49 88-141 39-87 (94)
38 2cqq_A RSGI RUH-037, DNAJ homo 98.9 2.3E-09 7.8E-14 82.1 6.3 45 92-138 8-55 (72)
39 3zqc_A MYB3; transcription-DNA 98.9 1.6E-09 5.4E-14 89.0 5.6 50 91-142 53-102 (131)
40 1h89_C C-MYB, MYB proto-oncoge 98.9 1.9E-09 6.5E-14 90.6 5.9 49 90-139 56-104 (159)
41 1h8a_C AMV V-MYB, MYB transfor 98.9 1.6E-09 5.4E-14 88.3 4.5 48 90-139 77-124 (128)
42 4eef_G F-HB80.4, designed hema 98.7 1.6E-09 5.4E-14 84.5 0.5 47 89-136 17-66 (74)
43 1h89_C C-MYB, MYB proto-oncoge 98.7 9.7E-09 3.3E-13 86.3 4.0 47 90-138 108-154 (159)
44 1x58_A Hypothetical protein 49 98.5 1.8E-07 6.1E-12 70.7 6.1 45 91-136 7-53 (62)
45 1ign_A Protein (RAP1); RAP1,ye 98.3 2.4E-07 8.3E-12 85.6 4.0 49 92-141 8-61 (246)
46 2xag_B REST corepressor 1; ami 97.6 8.9E-06 3E-10 81.1 0.0 41 93-135 190-230 (482)
47 1fex_A TRF2-interacting telome 97.6 5.5E-05 1.9E-09 55.7 4.2 48 92-139 2-57 (59)
48 1ofc_X ISWI protein; nuclear p 97.4 0.00016 5.4E-09 68.4 5.9 51 91-142 211-275 (304)
49 1ofc_X ISWI protein; nuclear p 97.3 0.00028 9.6E-09 66.7 6.7 51 92-143 109-160 (304)
50 3hm5_A DNA methyltransferase 1 96.9 0.0019 6.6E-08 51.9 6.9 45 93-138 31-79 (93)
51 4b4c_A Chromodomain-helicase-D 96.8 0.0019 6.6E-08 55.7 6.5 51 92-143 134-197 (211)
52 2ebi_A DNA binding protein GT- 96.7 0.0017 6E-08 49.5 4.6 57 89-146 1-70 (86)
53 4b4c_A Chromodomain-helicase-D 96.7 0.0024 8.2E-08 55.1 6.0 54 89-142 4-60 (211)
54 1ug2_A 2610100B20RIK gene prod 96.3 0.013 4.3E-07 47.7 7.6 50 88-138 29-80 (95)
55 4iej_A DNA methyltransferase 1 95.3 0.042 1.4E-06 44.3 6.8 50 94-144 32-85 (93)
56 2y9y_A Imitation switch protei 95.2 0.021 7.3E-07 55.5 5.7 49 94-143 125-174 (374)
57 2xb0_X Chromo domain-containin 95.1 0.012 4E-07 54.8 3.4 27 93-119 169-195 (270)
58 2lr8_A CAsp8-associated protei 93.9 0.0045 1.5E-07 47.9 0.0 46 91-138 13-60 (70)
59 2hzd_A Transcriptional enhance 94.4 0.049 1.7E-06 43.1 4.8 47 90-137 4-70 (82)
60 1dsq_A Nucleic acid binding pr 94.1 0.026 9.1E-07 35.1 2.1 20 2-21 2-21 (26)
61 2y9y_A Imitation switch protei 91.9 0.26 8.8E-06 48.0 6.5 50 92-142 228-291 (374)
62 1nc8_A Nucleocapsid protein; H 88.8 0.16 5.3E-06 32.1 1.4 18 3-20 7-24 (29)
63 1a6b_B Momulv, zinc finger pro 87.7 0.25 8.5E-06 34.0 1.9 20 3-22 11-30 (40)
64 2ihx_A Nucleocapsid (NC) prote 83.3 0.54 1.9E-05 33.9 2.0 20 3-22 31-50 (61)
65 1u6p_A GAG polyprotein; MLV, A 82.6 0.45 1.5E-05 34.8 1.4 20 3-22 24-43 (56)
66 1ign_A Protein (RAP1); RAP1,ye 82.5 2 7E-05 39.8 6.0 28 114-142 173-200 (246)
67 2a51_A Nucleocapsid protein; s 81.3 0.85 2.9E-05 30.1 2.2 16 4-19 2-17 (39)
68 2bl6_A Nucleocapsid protein P1 81.0 0.65 2.2E-05 30.4 1.6 17 4-20 2-18 (37)
69 2bl6_A Nucleocapsid protein P1 79.4 1 3.4E-05 29.4 2.1 17 4-20 21-37 (37)
70 1a1t_A Nucleocapsid protein; s 77.9 0.96 3.3E-05 31.7 1.7 17 4-20 14-30 (55)
71 2ihx_A Nucleocapsid (NC) prote 77.4 1.1 3.6E-05 32.4 1.9 21 1-21 3-23 (61)
72 2a51_A Nucleocapsid protein; s 76.4 1.2 4.1E-05 29.4 1.8 15 5-19 24-38 (39)
73 2ec7_A GAG polyprotein (PR55GA 75.8 1.3 4.4E-05 30.7 1.9 18 3-20 7-24 (49)
74 2ec7_A GAG polyprotein (PR55GA 75.8 1.3 4.5E-05 30.6 1.9 19 3-21 28-46 (49)
75 2xb0_X Chromo domain-containin 74.5 7 0.00024 36.3 7.0 44 93-136 4-50 (270)
76 1a1t_A Nucleocapsid protein; s 73.2 1.5 5E-05 30.7 1.6 19 3-21 34-52 (55)
77 1cl4_A Protein (GAG polyprotei 71.3 0.83 2.8E-05 32.5 0.0 20 2-21 1-20 (60)
78 1cl4_A Protein (GAG polyprotei 69.6 2.6 8.8E-05 29.9 2.3 20 3-22 31-50 (60)
79 3nyb_B Protein AIR2; polya RNA 63.6 3.4 0.00011 32.0 2.0 20 3-22 47-66 (83)
80 2cqf_A RNA-binding protein LIN 63.0 3.7 0.00013 29.7 2.1 19 3-21 30-48 (63)
81 2cqf_A RNA-binding protein LIN 63.0 3.8 0.00013 29.7 2.1 18 3-20 8-25 (63)
82 2li8_A Protein LIN-28 homolog 61.3 3.8 0.00013 31.0 1.9 17 4-20 48-64 (74)
83 2li8_A Protein LIN-28 homolog 59.3 4.5 0.00016 30.5 2.0 18 3-20 25-42 (74)
84 3ts2_A Protein LIN-28 homolog 57.1 4.3 0.00015 34.1 1.8 18 3-20 98-115 (148)
85 2lli_A Protein AIR2; RNA surve 54.9 5.9 0.0002 31.6 2.1 20 3-22 65-84 (124)
86 3nyb_B Protein AIR2; polya RNA 53.1 4.6 0.00016 31.2 1.2 19 3-21 6-24 (83)
87 2ysa_A Retinoblastoma-binding 49.9 7.4 0.00025 28.2 1.8 20 2-21 7-26 (55)
88 2lc3_A E3 ubiquitin-protein li 49.8 34 0.0012 27.4 5.7 52 87-142 8-80 (88)
89 2eqy_A RBP2 like, jumonji, at 47.3 41 0.0014 27.1 6.0 33 113-146 64-100 (122)
90 2lli_A Protein AIR2; RNA surve 46.1 10 0.00035 30.1 2.2 18 3-20 5-22 (124)
91 2li6_A SWI/SNF chromatin-remod 45.1 21 0.00073 28.5 4.0 31 113-144 71-101 (116)
92 2lm1_A Lysine-specific demethy 42.6 51 0.0017 25.6 5.7 33 113-145 66-101 (107)
93 1c20_A DEAD ringer protein; DN 38.5 42 0.0014 27.1 4.8 34 113-146 74-111 (128)
94 2cxy_A BAF250B subunit, HBAF25 37.3 50 0.0017 26.6 5.1 32 113-145 73-108 (125)
95 2jrz_A Histone demethylase jar 35.8 47 0.0016 26.5 4.7 32 113-145 62-97 (117)
96 1kkx_A Transcription regulator 31.1 45 0.0015 27.1 3.8 31 113-144 70-100 (123)
97 2rq5_A Protein jumonji; develo 30.9 27 0.00091 28.6 2.5 34 113-146 64-101 (121)
98 3o2i_A Uncharacterized protein 30.6 30 0.001 28.7 2.7 26 92-117 48-74 (125)
99 2kk0_A AT-rich interactive dom 29.5 58 0.002 27.0 4.4 33 113-145 86-122 (145)
100 1ig6_A MRF-2, modulator recogn 29.1 29 0.001 27.1 2.3 31 113-143 55-89 (107)
101 2jxj_A Histone demethylase jar 28.4 54 0.0018 24.9 3.7 32 113-144 58-92 (96)
102 3ukw_C Bimax1 peptide; arm rep 25.5 12 0.00042 24.0 -0.4 17 84-100 3-19 (28)
103 1lfb_A Liver transcription fac 22.5 1.3E+02 0.0043 23.6 4.9 25 86-110 7-31 (99)
104 1x3u_A Transcriptional regulat 20.8 1.9E+02 0.0066 19.8 5.2 44 95-143 17-60 (79)
No 1
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.67 E-value=1.4e-16 Score=119.84 Aligned_cols=66 Identities=32% Similarity=0.520 Sum_probs=60.0
Q ss_pred ccCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHHhhcccccCCCCccc
Q 021351 89 RKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRFNQNKRRRRSSLFD 156 (313)
Q Consensus 89 rKkg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYFir~~~~~k~krR~Sl~d 156 (313)
..+..+||+|||++|++++++||. +|..|| .+|++||..||+.||++||.+..+.+..+++.+|++
T Consensus 6 ~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia-~~~~~Rt~~q~k~r~~~~l~~~~~~g~~~~~~si~s 71 (72)
T 2cu7_A 6 SGYSVKWTIEEKELFEQGLAKFGR-RWTKIS-KLIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQKT 71 (72)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHTCS-CHHHHH-HHHSSSCHHHHHHHHHHHHHHHSCSCTTCCCSCCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHCc-CHHHHH-HHcCCCCHHHHHHHHHHHHHHHHhcCCCCCcccccc
Confidence 345567999999999999999999 999999 699999999999999999999988788888888875
No 2
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.58 E-value=7.1e-16 Score=119.56 Aligned_cols=48 Identities=31% Similarity=0.510 Sum_probs=44.2
Q ss_pred CCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHH
Q 021351 91 RGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFL 140 (313)
Q Consensus 91 kg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYFi 140 (313)
...+||+|||++||+||++|| ++|..|| .+|+|||..||+.||++|++
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA-~~v~~RT~~qcr~r~~~~~i 64 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYK-DDWNKVS-EHVGSRTQDECILHFLRLPI 64 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSS-SCHHHHH-HHHSSCCHHHHHHHHTTSCC
T ss_pred cCCCcCHHHHHHHHHHHHHhC-CCHHHHH-HHcCCCCHHHHHHHHHHhcc
Confidence 367899999999999999999 7999999 79999999999999987743
No 3
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.9e-15 Score=113.88 Aligned_cols=55 Identities=31% Similarity=0.448 Sum_probs=48.8
Q ss_pred ccCCCccCHHHHHHHHHHHHHcCC-----CCHHhhhhhhcCCCCHHHHHHHHHHHHHHHhh
Q 021351 89 RKRGVPWTEDEHRLFLLGLQKVGK-----GDWRGISRNFVKTRTPTQVASHAQKYFLRRFN 144 (313)
Q Consensus 89 rKkg~~WTeEEh~lFLegLekyGk-----GdWk~IAr~~V~TRT~~QVrSHAQKYFir~~~ 144 (313)
..+..+||+|||++|+++|++||. ++|..|| .+|++||..||+.||++||.++.+
T Consensus 5 ~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA-~~~~~Rt~~qcr~r~~~~l~~~~k 64 (75)
T 2yum_A 5 SSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIA-DELGNRTAKQVASQVQKYFIKLTK 64 (75)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHH-HHHSSSCHHHHHHHHHHHHGGGST
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHH-HHhCCCCHHHHHHHHHHHHHHHHh
Confidence 344567999999999999999996 6999999 799999999999999999977543
No 4
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.56 E-value=4.2e-15 Score=108.20 Aligned_cols=48 Identities=27% Similarity=0.598 Sum_probs=45.1
Q ss_pred CCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcC-CCCHHHHHHHHHHHHH
Q 021351 92 GVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVK-TRTPTQVASHAQKYFL 140 (313)
Q Consensus 92 g~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~-TRT~~QVrSHAQKYFi 140 (313)
..+||+||+++|+++|++||.++|..|| .+|+ +||..||+.|+++||+
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA-~~~~~~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNWADIA-DYVGNARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCHHHHH-HHHCSSCCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHH-HHHCCCCCHHHHHHHHHHHcc
Confidence 3469999999999999999988999999 7999 9999999999999986
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.53 E-value=7.8e-15 Score=107.09 Aligned_cols=50 Identities=28% Similarity=0.534 Sum_probs=46.0
Q ss_pred CCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHH
Q 021351 91 RGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLR 141 (313)
Q Consensus 91 kg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYFir 141 (313)
...+||+||+++|++++++||.++|..|| .+|++||..||+.||++||..
T Consensus 7 ~~~~WT~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 7 GDPSWTAQEEMALLEAVMDCGFGNWQDVA-NQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCSSSCHHHHHHHHHHHHHTCTTCHHHHH-HHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCcHHHHH-HHhCCCCHHHHHHHHHHHccC
Confidence 34569999999999999999988999999 799999999999999999863
No 6
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=7.4e-14 Score=102.68 Aligned_cols=55 Identities=20% Similarity=0.387 Sum_probs=48.4
Q ss_pred cCCccccCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 021351 84 GRSRERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRF 143 (313)
Q Consensus 84 ~~~~~rKkg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYFir~~ 143 (313)
+..++|+...+||+||+++|++||.+||+ +|..|| .+|++||..||+.| ||+..+
T Consensus 4 ~~~~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia-~~l~~rt~~~~v~~---Yy~~Kk 58 (61)
T 2eqr_A 4 GSSGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIA-SYLERKSVPDCVLY---YYLTKK 58 (61)
T ss_dssp SCCCCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHH-HHCTTSCHHHHHHH---HHHHTC
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCC-CHHHHH-HHcCCCCHHHHHHH---HHHhcC
Confidence 45577888999999999999999999998 999999 89999999999877 666543
No 7
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.46 E-value=8e-14 Score=98.24 Aligned_cols=47 Identities=28% Similarity=0.495 Sum_probs=44.5
Q ss_pred CCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHH
Q 021351 92 GVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (313)
Q Consensus 92 g~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF 139 (313)
..+||+||+++|++++++||.++|..|| .+|++||..||+.||++|+
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIA-NYLPNRTDVQCQHRWQKVL 49 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHH-HTSTTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHH-HHcCCCCHHHHHHHHHHHc
Confidence 4579999999999999999999999999 7999999999999999886
No 8
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.43 E-value=1.2e-13 Score=97.53 Aligned_cols=47 Identities=26% Similarity=0.432 Sum_probs=44.1
Q ss_pred CCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHH
Q 021351 92 GVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (313)
Q Consensus 92 g~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF 139 (313)
..+||+||+++|++++++||.++|..|| .+|++||..||+.||++|+
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIA-KHLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHH-TTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHH-HHcCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998999999 7999999999999999886
No 9
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.40 E-value=3.5e-13 Score=97.59 Aligned_cols=49 Identities=20% Similarity=0.388 Sum_probs=45.0
Q ss_pred cCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHH
Q 021351 90 KRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (313)
Q Consensus 90 Kkg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF 139 (313)
.+..+||+||+++|++++++||.++|..|| .+|++||..||+.||++|+
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLA-SHFPNRTDQQCQYRWLRVL 54 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHH-HHCSSSCHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHH-HHccCCCHHHHHHHHHHHc
Confidence 445679999999999999999987999999 7999999999999998876
No 10
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.37 E-value=9.9e-13 Score=97.95 Aligned_cols=54 Identities=20% Similarity=0.362 Sum_probs=48.6
Q ss_pred ccccCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcC--CCCHHHHHHHHHHHHHH
Q 021351 87 RERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVK--TRTPTQVASHAQKYFLR 141 (313)
Q Consensus 87 ~~rKkg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~--TRT~~QVrSHAQKYFir 141 (313)
..+++..+||+||++++++++++||.++|..|| .+++ +||..||+.+|.+|+..
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia-~~~~~~~Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKIL-LHYKFNNRTSVMLKDRWRTMKKL 60 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHH-HHSCCSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHH-HHcCcCCCCHHHHHHHHHHHcCC
Confidence 456667789999999999999999988999999 7999 99999999999988753
No 11
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=9.5e-13 Score=98.11 Aligned_cols=51 Identities=18% Similarity=0.446 Sum_probs=45.9
Q ss_pred ccCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHH
Q 021351 89 RKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFL 140 (313)
Q Consensus 89 rKkg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYFi 140 (313)
..+..+||+||+++|++++++||.++|..|| .+|++||..||+.||++|+.
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~L~ 56 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYGKNQWSRIA-SLLHRKSAKQCKARWYEWLD 56 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTCSSCHHHHH-HHSTTCCHHHHHHHHHHTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHH-HHhcCCCHHHHHHHHHHHcC
Confidence 3455679999999999999999988999999 79999999999999988763
No 12
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.34 E-value=1.5e-12 Score=92.50 Aligned_cols=47 Identities=23% Similarity=0.405 Sum_probs=43.8
Q ss_pred CCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcC--CCCHHHHHHHHHHHH
Q 021351 92 GVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVK--TRTPTQVASHAQKYF 139 (313)
Q Consensus 92 g~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~--TRT~~QVrSHAQKYF 139 (313)
..+||+||++++++++++||.++|..|| .+++ +||..||+.++.+|.
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia-~~~~~~~Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKIL-LHYKFNNRTSVMLKDRWRTMK 50 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHH-HHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHH-HHcCCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999988999999 7899 999999999998876
No 13
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=2.7e-12 Score=95.33 Aligned_cols=54 Identities=24% Similarity=0.478 Sum_probs=45.6
Q ss_pred CccccCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 021351 86 SRERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRF 143 (313)
Q Consensus 86 ~~~rKkg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYFir~~ 143 (313)
.+++.....||+||+++|++||.+||+ ||..|++++|++||..||..+ ||...+
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~f---YY~wKk 56 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGELITF---YYYWKK 56 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTTSCHHHHHHH---HHHHHC
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCcHHHHHHH---HhcccC
Confidence 355666778999999999999999999 999999558999999999765 665543
No 14
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.30 E-value=3.4e-12 Score=95.15 Aligned_cols=48 Identities=27% Similarity=0.475 Sum_probs=42.5
Q ss_pred CCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcC--CCCHHHHHHHHHHHH
Q 021351 91 RGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVK--TRTPTQVASHAQKYF 139 (313)
Q Consensus 91 kg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~--TRT~~QVrSHAQKYF 139 (313)
+..+||+||+++|++++++||.++|..|| .+++ +||..||+.+|.+|.
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~~W~~Ia-~~~~~~~Rt~~qcr~Rw~nl~ 59 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEGNWAAIS-KNYPFVNRTAVMIKDRWRTMK 59 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHH-HHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCchHHHH-hhcCCCCCCHHHHHHHHHHHh
Confidence 34569999999999999999999999999 5654 999999999998764
No 15
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.26 E-value=2.5e-12 Score=117.90 Aligned_cols=51 Identities=27% Similarity=0.500 Sum_probs=45.9
Q ss_pred ccCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHH
Q 021351 89 RKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLR 141 (313)
Q Consensus 89 rKkg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYFir 141 (313)
.+...+||+||+++|++||.+||+ ||..|| .+|+|||..||+.||++|..|
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYGK-DW~~IA-k~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYGR-DFQAIS-DVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHSS-CHHHHH-HHHSSCCHHHHHHHHHHTTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHCc-CHHHHH-HHcCCCCHHHHHHHHHHHHHH
Confidence 345678999999999999999998 999999 699999999999999877644
No 16
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=1.7e-11 Score=90.43 Aligned_cols=52 Identities=19% Similarity=0.357 Sum_probs=45.6
Q ss_pred cCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHHhh
Q 021351 90 KRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRFN 144 (313)
Q Consensus 90 Kkg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYFir~~~ 144 (313)
.+..+||+||+++|++++++||. +|..||+ +++ ||..||+.||++|+....+
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~g-Rt~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIG-RTAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHS-SCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccC-cCHHHHHHHHHHHhChHhc
Confidence 34457999999999999999999 9999995 665 9999999999999877654
No 17
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.21 E-value=2.3e-11 Score=92.25 Aligned_cols=56 Identities=29% Similarity=0.428 Sum_probs=48.7
Q ss_pred cccCCCccCHHHHHHHHHHHHHcCCCC---HHhhhhhhcC--CCCHHHHHHHHHHHHHHHhhc
Q 021351 88 ERKRGVPWTEDEHRLFLLGLQKVGKGD---WRGISRNFVK--TRTPTQVASHAQKYFLRRFNQ 145 (313)
Q Consensus 88 ~rKkg~~WTeEEh~lFLegLekyGkGd---Wk~IAr~~V~--TRT~~QVrSHAQKYFir~~~~ 145 (313)
.+|....||+|+|+.|++|++++|. + |+.|- ++|+ ..|..||+||.|||++++++.
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~-~~AtPk~Il-~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKIL-DLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHH-HHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCC-CCCCcHHHH-HHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 4677788999999999999999994 5 88998 6766 579999999999999998754
No 18
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=99.20 E-value=7e-12 Score=124.43 Aligned_cols=51 Identities=27% Similarity=0.470 Sum_probs=46.5
Q ss_pred cCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 021351 90 KRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRR 142 (313)
Q Consensus 90 Kkg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYFir~ 142 (313)
+...+||+||+++|++||.+||+ ||+.|| .+|+|||..||++||++|+.++
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA-~~VgTKT~~Qvk~fy~~~kkr~ 428 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR-DFQAIS-DVIGNKSVVQVKNFFVNYRRRF 428 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT-CHHHHH-HHHSSCCHHHHHHHHHHTTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHH-HHhCCCCHHHHHHHHHHHHHHh
Confidence 45788999999999999999999 999999 7999999999999998876543
No 19
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.83 E-value=1.5e-12 Score=102.14 Aligned_cols=50 Identities=28% Similarity=0.428 Sum_probs=45.4
Q ss_pred CCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 021351 91 RGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRR 142 (313)
Q Consensus 91 kg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYFir~ 142 (313)
+..+||+||+++|++++++||. +|..|| .+|++||..||+.||++|+.+.
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~-~W~~IA-~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGR-NWSAIA-RMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 3456999999999999999999 899999 7999999999999999887654
No 20
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.19 E-value=1.8e-11 Score=93.97 Aligned_cols=50 Identities=22% Similarity=0.484 Sum_probs=44.2
Q ss_pred ccCCCccCHHHHHHHHHHHHHcCC---CCHHhhhhhhcCCCCHHHHHHHHHHHH
Q 021351 89 RKRGVPWTEDEHRLFLLGLQKVGK---GDWRGISRNFVKTRTPTQVASHAQKYF 139 (313)
Q Consensus 89 rKkg~~WTeEEh~lFLegLekyGk---GdWk~IAr~~V~TRT~~QVrSHAQKYF 139 (313)
+....+||.||+++|++||++||+ .+|..|| .+|++||..||+.||+++.
T Consensus 15 ~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA-~~vpGRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIA-RCVPSKSKEDCIARYKLLV 67 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHG-GGCSSSCHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHH-HHcCCCCHHHHHHHHHHHH
Confidence 345678999999999999999995 4899999 7999999999999998654
No 21
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=99.17 E-value=6e-11 Score=89.91 Aligned_cols=52 Identities=25% Similarity=0.477 Sum_probs=44.3
Q ss_pred ccCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHHhh
Q 021351 89 RKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRFN 144 (313)
Q Consensus 89 rKkg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYFir~~~ 144 (313)
|+....||+||+++|++||.+||+ ||..|++++|+|||..||..+ ||...+.
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~f---YY~wKkt 56 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEY---YYMWKTT 56 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHH---HHHHHTC
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCCHHHHHHH---HHhhcCC
Confidence 456678999999999999999999 999999548999999999877 5554443
No 22
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.16 E-value=2.6e-11 Score=95.46 Aligned_cols=47 Identities=26% Similarity=0.418 Sum_probs=43.9
Q ss_pred CCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHH
Q 021351 92 GVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (313)
Q Consensus 92 g~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF 139 (313)
..+||+||+++|++++++||.++|..|| .+|++||..||+.|+++|+
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIA-KHLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTTCHHHHH-TTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcHHHHh-hhhcCCCHHHHHHHHHhcc
Confidence 4579999999999999999998999999 7999999999999998875
No 23
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.13 E-value=4.6e-11 Score=95.07 Aligned_cols=46 Identities=30% Similarity=0.475 Sum_probs=43.5
Q ss_pred CccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHH
Q 021351 93 VPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (313)
Q Consensus 93 ~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF 139 (313)
..||+||+++|++++++||.++|..|| .+|++||+.||+.++.+|+
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRIS-QLMITRNPRQCRERWNNYI 47 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHH-HHTTTSCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHh-hhcCCCCHHHHHHHHHHHH
Confidence 469999999999999999998999999 7999999999999998876
No 24
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.10 E-value=9.7e-11 Score=95.79 Aligned_cols=51 Identities=18% Similarity=0.372 Sum_probs=46.0
Q ss_pred ccccCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHH
Q 021351 87 RERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (313)
Q Consensus 87 ~~rKkg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF 139 (313)
++..+..+||+||+++|++++++||. +|..|| .++++||..||+.||++|+
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia-~~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIA-ATFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHH-HTCTTCCHHHHHHHHHHHT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHH-HHcCCCCHHHHHHHHhhhc
Confidence 34556677999999999999999998 999999 7999999999999999887
No 25
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.10 E-value=1.8e-10 Score=90.36 Aligned_cols=50 Identities=16% Similarity=0.333 Sum_probs=45.1
Q ss_pred ccCHHHHHHHHHHHHHcCCCCHHhhhhh---hcCCCCHHHHHHHHHHHHHHHh
Q 021351 94 PWTEDEHRLFLLGLQKVGKGDWRGISRN---FVKTRTPTQVASHAQKYFLRRF 143 (313)
Q Consensus 94 ~WTeEEh~lFLegLekyGkGdWk~IAr~---~V~TRT~~QVrSHAQKYFir~~ 143 (313)
+||+||++.+++|+++||.|+|..|++. ++..||..||+.+|.+++.+..
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 6999999999999999999999999964 3789999999999999876554
No 26
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.08 E-value=9.2e-11 Score=96.32 Aligned_cols=46 Identities=26% Similarity=0.447 Sum_probs=43.8
Q ss_pred CccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHH
Q 021351 93 VPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (313)
Q Consensus 93 ~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF 139 (313)
++||+||++++++++++||.++|..|| .+|++||..||+.||++|+
T Consensus 3 g~Wt~eED~~L~~~v~~~g~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGPQNWPRIT-SFLPNRSPKQCRERWFNHL 48 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCCGGGGT-TSCTTSCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCcCCHHHHH-HHHCCCCHHHHHHHHhhcc
Confidence 579999999999999999988999999 7999999999999999887
No 27
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.07 E-value=1.5e-10 Score=94.43 Aligned_cols=48 Identities=25% Similarity=0.451 Sum_probs=44.5
Q ss_pred CCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHH
Q 021351 91 RGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (313)
Q Consensus 91 kg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF 139 (313)
+..+||+||+++|++++++||.++|..|| .++++||..||+.||++|+
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIA-KHLKGRIGKQCRERWHNHL 73 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHH-HHSSSCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHH-HHhcCCcHHHHHHHHHHhc
Confidence 44679999999999999999988999999 7999999999999998876
No 28
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.06 E-value=2.1e-10 Score=91.81 Aligned_cols=51 Identities=25% Similarity=0.440 Sum_probs=45.3
Q ss_pred CccCHHHHHHHHHHHHHcCC---CCHHhhhhhhcCCCCHHHHHHHHHHHHHHHhh
Q 021351 93 VPWTEDEHRLFLLGLQKVGK---GDWRGISRNFVKTRTPTQVASHAQKYFLRRFN 144 (313)
Q Consensus 93 ~~WTeEEh~lFLegLekyGk---GdWk~IAr~~V~TRT~~QVrSHAQKYFir~~~ 144 (313)
..||.||+++|++||.+||+ .+|..|| .+|++||..||+.||++++.+...
T Consensus 9 ~~WT~eEd~~L~~al~~~~~~~~~rW~~IA-~~vpGRT~~q~k~ry~~l~~dv~~ 62 (93)
T 2cjj_A 9 RPWSAKENKAFERALAVYDKDTPDRWANVA-RAVEGRTPEEVKKHYEILVEDIKY 62 (93)
T ss_dssp CSCCHHHHHHHHHHHHHSCTTCTTHHHHHH-HHSTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCchHHHHH-HHcCCCCHHHHHHHHHHHHHHHHH
Confidence 46999999999999999985 3699999 799999999999999988766543
No 29
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.05 E-value=3.3e-10 Score=90.14 Aligned_cols=52 Identities=25% Similarity=0.452 Sum_probs=46.4
Q ss_pred CCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHHhh
Q 021351 91 RGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRFN 144 (313)
Q Consensus 91 kg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYFir~~~ 144 (313)
+..+||+||+++|++++++||. +|..|| .+|++||..||+.|+..+..+..+
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia-~~l~gRt~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGP-KWNKIS-KFLKNRSDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCS-CHHHHH-HHHSSSCHHHHHHHHHHHHHHHHS
T ss_pred cccccCHHHHHHHHHHHHHhCc-CHHHHH-HHCCCCCHHHHHHHHHHHHhhHHH
Confidence 4578999999999999999998 999999 799999999999999877666543
No 30
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.05 E-value=2.8e-10 Score=92.99 Aligned_cols=56 Identities=18% Similarity=0.343 Sum_probs=48.1
Q ss_pred ccccCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhh---cCCCCHHHHHHHHHHHHHHH
Q 021351 87 RERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNF---VKTRTPTQVASHAQKYFLRR 142 (313)
Q Consensus 87 ~~rKkg~~WTeEEh~lFLegLekyGkGdWk~IAr~~---V~TRT~~QVrSHAQKYFir~ 142 (313)
..+++..+||+||++.+++|+++||.|+|..|++.+ +..||..||+.+|.+++.+.
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 456777889999999999999999999999999643 27899999999999887543
No 31
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.01 E-value=6.1e-10 Score=93.27 Aligned_cols=57 Identities=21% Similarity=0.360 Sum_probs=49.1
Q ss_pred ccccCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhh---cCCCCHHHHHHHHHHHHHHHh
Q 021351 87 RERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNF---VKTRTPTQVASHAQKYFLRRF 143 (313)
Q Consensus 87 ~~rKkg~~WTeEEh~lFLegLekyGkGdWk~IAr~~---V~TRT~~QVrSHAQKYFir~~ 143 (313)
..|++..+||+||++.+++|+++||.|+|..|++.+ +..||..||+.+|.+++..-.
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 345667789999999999999999999999999643 389999999999999876543
No 32
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.99 E-value=2.2e-10 Score=88.58 Aligned_cols=45 Identities=20% Similarity=0.409 Sum_probs=41.1
Q ss_pred CccCHHHHHHHHHHHHHcCC---CCHHhhhhhhcCCCCHHHHHHHHHHH
Q 021351 93 VPWTEDEHRLFLLGLQKVGK---GDWRGISRNFVKTRTPTQVASHAQKY 138 (313)
Q Consensus 93 ~~WTeEEh~lFLegLekyGk---GdWk~IAr~~V~TRT~~QVrSHAQKY 138 (313)
..||+||+++|++||..|++ ++|..|| ++|++||..||+.||+..
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA-~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHKPGFWSEVA-AAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSSSSHHHHHH-HHTTTSCHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccHHHHHH-HHcCCCCHHHHHHHHHHH
Confidence 45999999999999999998 5899999 899999999999997644
No 33
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.98 E-value=5e-10 Score=88.13 Aligned_cols=47 Identities=23% Similarity=0.580 Sum_probs=43.0
Q ss_pred CCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHH
Q 021351 91 RGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (313)
Q Consensus 91 kg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF 139 (313)
+..+||+||+++|++++++||. +|..|| .+|++||..||+.|+..+.
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia-~~l~gRt~~~~k~rw~~~~ 101 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGN-RWAEIA-KLLPGRTDNAIKNHWNSTM 101 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSS-CHHHHH-TTCTTCCHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHHHHhCC-CHHHHH-HHcCCCCHHHHHHHHHHHH
Confidence 4568999999999999999997 999999 7999999999999987654
No 34
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.97 E-value=7.3e-10 Score=92.70 Aligned_cols=57 Identities=16% Similarity=0.318 Sum_probs=49.4
Q ss_pred ccccCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhh---cCCCCHHHHHHHHHHHHHHHh
Q 021351 87 RERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNF---VKTRTPTQVASHAQKYFLRRF 143 (313)
Q Consensus 87 ~~rKkg~~WTeEEh~lFLegLekyGkGdWk~IAr~~---V~TRT~~QVrSHAQKYFir~~ 143 (313)
..+++..+||+||++.+++|+++||.|+|..|++.+ +..||..||+.+|.+++....
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~ 71 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 71 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhc
Confidence 345667789999999999999999999999999654 489999999999999886543
No 35
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.97 E-value=8.3e-10 Score=90.26 Aligned_cols=52 Identities=23% Similarity=0.406 Sum_probs=45.7
Q ss_pred cCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 021351 90 KRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRF 143 (313)
Q Consensus 90 Kkg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYFir~~ 143 (313)
.+..+||+||+++|++++++||. +|..|| .+|++||..||+.||..+..++.
T Consensus 60 ~~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia-~~l~gRt~~~~k~rw~~l~~k~~ 111 (126)
T 3osg_A 60 ISHTPWTAEEDALLVQKIQEYGR-QWAIIA-KFFPGRTDIHIKNRWVTISNKLG 111 (126)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCS-CHHHHH-TTSTTCCHHHHHHHHHHHHHHTT
T ss_pred cccccCCHHHHHHHHHHHHHHCc-CHHHHH-HHcCCCCHHHHHHHHHHHHHhcC
Confidence 34568999999999999999997 999999 79999999999999987665543
No 36
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.91 E-value=1.3e-09 Score=83.74 Aligned_cols=45 Identities=22% Similarity=0.288 Sum_probs=40.2
Q ss_pred ccCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHH
Q 021351 89 RKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQ 136 (313)
Q Consensus 89 rKkg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQ 136 (313)
..+..+||+||++++++++++||. +|..|| .++ .||..||+.+|.
T Consensus 20 ~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA-~~l-gRt~~q~knRw~ 64 (73)
T 2llk_A 20 RNHVGKYTPEEIEKLKELRIKHGN-DWATIG-AAL-GRSASSVKDRCR 64 (73)
T ss_dssp CCCCCSSCHHHHHHHHHHHHHHSS-CHHHHH-HHH-TSCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCC-CHHHHH-HHh-CCCHHHHHHHHH
Confidence 344567999999999999999998 699999 677 999999999985
No 37
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.90 E-value=9e-10 Score=87.75 Aligned_cols=49 Identities=22% Similarity=0.407 Sum_probs=43.4
Q ss_pred cccCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHH
Q 021351 88 ERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLR 141 (313)
Q Consensus 88 ~rKkg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYFir 141 (313)
.|+....||+||+++|.+++.+||+ +|..|| .++++||..||..| ||..
T Consensus 39 ~r~~~~~WT~eE~~~F~~~~~~~gK-~F~~Ia-~~l~~Kt~~~cV~~---YY~~ 87 (94)
T 4a69_C 39 DRQVMNMWSEQEKETFREKFMQHPK-NFGLIA-SFLERKTVAECVLY---YYLT 87 (94)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHSTT-CHHHHH-HTCTTCCHHHHHHH---HHHH
T ss_pred ccCCCCCCCHHHHHHHHHHHHHcCC-CHHHHH-HHcCCCCHHHHHHH---Hhcc
Confidence 4466677999999999999999999 999998 89999999999877 5554
No 38
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.89 E-value=2.3e-09 Score=82.05 Aligned_cols=45 Identities=24% Similarity=0.469 Sum_probs=39.9
Q ss_pred CCccCHHHHHHHHHHHHHcCCC---CHHhhhhhhcCCCCHHHHHHHHHHH
Q 021351 92 GVPWTEDEHRLFLLGLQKVGKG---DWRGISRNFVKTRTPTQVASHAQKY 138 (313)
Q Consensus 92 g~~WTeEEh~lFLegLekyGkG---dWk~IAr~~V~TRT~~QVrSHAQKY 138 (313)
...||.||+++|.++|.+|+.| +|..|| +++ .||..||+.||+++
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA-~~l-gRt~~eV~~~y~~L 55 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIA-HEL-GRSVTDVTTKAKQL 55 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHH-HHH-TSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHH-HHh-CCCHHHHHHHHHHH
Confidence 4569999999999999999964 699999 678 69999999998765
No 39
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.89 E-value=1.6e-09 Score=88.97 Aligned_cols=50 Identities=20% Similarity=0.412 Sum_probs=45.0
Q ss_pred CCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 021351 91 RGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRR 142 (313)
Q Consensus 91 kg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYFir~ 142 (313)
+..+||+||+++|++++++||. +|..|| .+|++||..||+.||..|+.+.
T Consensus 53 ~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia-~~l~gRt~~~~k~rw~~~l~~~ 102 (131)
T 3zqc_A 53 VKHAWTPEEDETIFRNYLKLGS-KWSVIA-KLIPGRTDNAIKNRWNSSISKR 102 (131)
T ss_dssp CCSCCCHHHHHHHHHHHHHSCS-CHHHHT-TTSTTCCHHHHHHHHHHTTGGG
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-CHHHHH-HHcCCCCHHHHHHHHHHHHHHH
Confidence 3457999999999999999997 999999 7999999999999998877554
No 40
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.88 E-value=1.9e-09 Score=90.60 Aligned_cols=49 Identities=24% Similarity=0.371 Sum_probs=45.0
Q ss_pred cCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHH
Q 021351 90 KRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (313)
Q Consensus 90 Kkg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF 139 (313)
.+..+||+||++++++++++||.++|..|| .++++||..||+.|+++|+
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIA-KHLKGRIGKQCRERWHNHL 104 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCSCCHHHHH-HTSTTCCHHHHHHHHHHTT
T ss_pred cCCCCCChHHHHHHHHHHHHhCcccHHHHH-HHcCCCCHHHHHHHHHHHh
Confidence 345789999999999999999988999999 7999999999999998875
No 41
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.85 E-value=1.6e-09 Score=88.32 Aligned_cols=48 Identities=25% Similarity=0.558 Sum_probs=42.9
Q ss_pred cCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHH
Q 021351 90 KRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (313)
Q Consensus 90 Kkg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF 139 (313)
.+..+||+||+++|++++++||. +|..|| .+|++||..||+.|+..+.
T Consensus 77 ~~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia-~~l~gRt~~~~k~r~~~~~ 124 (128)
T 1h8a_C 77 VKKTSWTEEEDRIIYQAHKRLGN-RWAEIA-KLLPGRTDNAVKNHWNSTM 124 (128)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCS-CHHHHG-GGSTTCCHHHHHHHHHTTT
T ss_pred cccccCCHHHHHHHHHHHHHHCc-CHHHHH-HHCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999998 999999 7999999999999986443
No 42
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.73 E-value=1.6e-09 Score=84.49 Aligned_cols=47 Identities=34% Similarity=0.680 Sum_probs=40.1
Q ss_pred ccCCCccCHHHHHHHHHHHHHcCCC---CHHhhhhhhcCCCCHHHHHHHHH
Q 021351 89 RKRGVPWTEDEHRLFLLGLQKVGKG---DWRGISRNFVKTRTPTQVASHAQ 136 (313)
Q Consensus 89 rKkg~~WTeEEh~lFLegLekyGkG---dWk~IAr~~V~TRT~~QVrSHAQ 136 (313)
+-.+..||.||.++|..||.+|+++ +|..|| .+|++||+.||+.||+
T Consensus 17 ~~ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA-~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 17 RGSGRPWKFSENIAFEIALSFTNKDTPDRWKKVA-QYVKGRTPEEVKKHYE 66 (74)
T ss_dssp -----CCCTTHHHHHHHHTSSSCSSCCSSSTTTG-GGSCSSCHHHHHGGGC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHH-HHcCCCCHHHHHHHHH
Confidence 3446679999999999999999986 899999 8999999999999986
No 43
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.68 E-value=9.7e-09 Score=86.28 Aligned_cols=47 Identities=23% Similarity=0.557 Sum_probs=42.7
Q ss_pred cCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHH
Q 021351 90 KRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 138 (313)
Q Consensus 90 Kkg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKY 138 (313)
.+..+||+||++++++++++||. +|..|| .+|++||..||+.|+..+
T Consensus 108 ~~~~~WT~eEd~~L~~~~~~~g~-~W~~Ia-~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 108 VKKTSWTEEEDRIIYQAHKRLGN-RWAEIA-KLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCS-CHHHHH-TTSTTCCHHHHHHHHHTT
T ss_pred ccccCCChHHHHHHHHHHHHHCC-CHHHHH-HHCCCCCHHHHHHHHHHH
Confidence 35678999999999999999998 999999 799999999999998644
No 44
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.50 E-value=1.8e-07 Score=70.70 Aligned_cols=45 Identities=22% Similarity=0.447 Sum_probs=39.7
Q ss_pred CCCccCHHHHHHHHHHHHHcCCCCHHhhhh--hhcCCCCHHHHHHHHH
Q 021351 91 RGVPWTEDEHRLFLLGLQKVGKGDWRGISR--NFVKTRTPTQVASHAQ 136 (313)
Q Consensus 91 kg~~WTeEEh~lFLegLekyGkGdWk~IAr--~~V~TRT~~QVrSHAQ 136 (313)
+..+||+||++.+++|+++||. .|+.|+. .|+..||...++..+.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r 53 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYH 53 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHH
Confidence 4456999999999999999999 9999995 3778999999998765
No 45
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.33 E-value=2.4e-07 Score=85.58 Aligned_cols=49 Identities=18% Similarity=0.330 Sum_probs=44.5
Q ss_pred CCccCHHHHHHHHHHHHHcCCCC-----HHhhhhhhcCCCCHHHHHHHHHHHHHH
Q 021351 92 GVPWTEDEHRLFLLGLQKVGKGD-----WRGISRNFVKTRTPTQVASHAQKYFLR 141 (313)
Q Consensus 92 g~~WTeEEh~lFLegLekyGkGd-----Wk~IAr~~V~TRT~~QVrSHAQKYFir 141 (313)
..+||+||++++|+.+++||..+ |..|| .+++.||..|||.||.+|+.+
T Consensus 8 k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IA-k~LpGRT~nsIRnRw~~~L~~ 61 (246)
T 1ign_A 8 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEIS-HYVPNHTGNSIRHRFRVYLSK 61 (246)
T ss_dssp CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHT-TTSTTSCHHHHHHHHHHTTGG
T ss_pred CCCCCHHHHHHHHHHHHHhCcCccccccHHHHH-HHcCCCCHHHHHHHHHHHHhh
Confidence 34799999999999999998854 99999 799999999999999998855
No 46
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.60 E-value=8.9e-06 Score=81.08 Aligned_cols=41 Identities=17% Similarity=0.344 Sum_probs=0.0
Q ss_pred CccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHH
Q 021351 93 VPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHA 135 (313)
Q Consensus 93 ~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHA 135 (313)
..||+||+.+|.+||.+||+ +|..|+ .+|++||..||..||
T Consensus 190 d~WT~eE~~lFe~al~~yGK-dF~~I~-~~lp~Ksv~e~V~yY 230 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHGK-TFHRIQ-QMLPDKSIASLVKFY 230 (482)
T ss_dssp -------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcCc-cHHHHH-HHcCCCCHHHHHHHh
Confidence 36999999999999999999 999999 799999999998774
No 47
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.59 E-value=5.5e-05 Score=55.67 Aligned_cols=48 Identities=10% Similarity=0.269 Sum_probs=42.7
Q ss_pred CCccCHHHHHHHHHHHHHc--------CCCCHHhhhhhhcCCCCHHHHHHHHHHHH
Q 021351 92 GVPWTEDEHRLFLLGLQKV--------GKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (313)
Q Consensus 92 g~~WTeEEh~lFLegLeky--------GkGdWk~IAr~~V~TRT~~QVrSHAQKYF 139 (313)
..+||+||+..+++.|.+| |..-|+.|++..+..+|-.++|.|+.||+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 3679999999999999999 65689999954799999999999998875
No 48
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.42 E-value=0.00016 Score=68.43 Aligned_cols=51 Identities=24% Similarity=0.407 Sum_probs=43.8
Q ss_pred CCCccCHHHHHHHHHHHHHcCC---CCHHhhhh-----------hhcCCCCHHHHHHHHHHHHHHH
Q 021351 91 RGVPWTEDEHRLFLLGLQKVGK---GDWRGISR-----------NFVKTRTPTQVASHAQKYFLRR 142 (313)
Q Consensus 91 kg~~WTeEEh~lFLegLekyGk---GdWk~IAr-----------~~V~TRT~~QVrSHAQKYFir~ 142 (313)
++..||+|||+.||-+|.+||. |+|..|.. .|+.+||+.++..|++ .++++
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~-tLi~~ 275 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCN-TLITL 275 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHH-HHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH-HHHHH
Confidence 4457999999999999999999 99999962 4999999999999997 44443
No 49
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.34 E-value=0.00028 Score=66.74 Aligned_cols=51 Identities=25% Similarity=0.466 Sum_probs=46.4
Q ss_pred CC-ccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 021351 92 GV-PWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRF 143 (313)
Q Consensus 92 g~-~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYFir~~ 143 (313)
|. .||..+-..|+.|+++||+.+|..|| ..|++||+.+|+.|++-|+.+..
T Consensus 109 GF~~W~rrdf~~Fi~a~~kyGr~~~~~IA-~ev~~Kt~eEV~~Y~~vFw~ry~ 160 (304)
T 1ofc_X 109 GFTAWTKRDFNQFIKANEKYGRDDIDNIA-KDVEGKTPEEVIEYNAVFWERCT 160 (304)
T ss_dssp SCTTCCHHHHHHHHHHHHHHCTTCHHHHT-TSSTTCCHHHHHHHHHHHHHHGG
T ss_pred hhcccCHHHHHHHHHHHHHhCHHHHHHHH-HHhcCCCHHHHHHHHHHHHHhHH
Confidence 44 59999999999999999999999999 79999999999999988777663
No 50
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.95 E-value=0.0019 Score=51.88 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=38.6
Q ss_pred CccCHHHHHHHHHHHHHcCCCCHHhhhhhhc----CCCCHHHHHHHHHHH
Q 021351 93 VPWTEDEHRLFLLGLQKVGKGDWRGISRNFV----KTRTPTQVASHAQKY 138 (313)
Q Consensus 93 ~~WTeEEh~lFLegLekyGkGdWk~IAr~~V----~TRT~~QVrSHAQKY 138 (313)
..||.||...+++.+++||- +|-.|+..|- +.||..+++.++-..
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v 79 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHH
Confidence 67999999999999999998 9999995442 579999999986433
No 51
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.83 E-value=0.0019 Score=55.68 Aligned_cols=51 Identities=22% Similarity=0.551 Sum_probs=41.0
Q ss_pred CCccCHHHHHHHHHHHHHcCCCCHHhhhh-------------hhcCCCCHHHHHHHHHHHHHHHh
Q 021351 92 GVPWTEDEHRLFLLGLQKVGKGDWRGISR-------------NFVKTRTPTQVASHAQKYFLRRF 143 (313)
Q Consensus 92 g~~WTeEEh~lFLegLekyGkGdWk~IAr-------------~~V~TRT~~QVrSHAQKYFir~~ 143 (313)
...||+||+..||.||.+||.|+|..|-. .+..+++..++..++. |++++-
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~-~Ll~~l 197 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRAD-YLIKLL 197 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHH-HHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHH-HHHHHH
Confidence 34599999999999999999999999953 2245677788888884 777764
No 52
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.69 E-value=0.0017 Score=49.51 Aligned_cols=57 Identities=19% Similarity=0.362 Sum_probs=42.2
Q ss_pred ccCCCccCHHHHHHHHHHHHHcCC---------CCHHhhhhhhcC----CCCHHHHHHHHHHHHHHHhhcc
Q 021351 89 RKRGVPWTEDEHRLFLLGLQKVGK---------GDWRGISRNFVK----TRTPTQVASHAQKYFLRRFNQN 146 (313)
Q Consensus 89 rKkg~~WTeEEh~lFLegLekyGk---------GdWk~IAr~~V~----TRT~~QVrSHAQKYFir~~~~~ 146 (313)
+++...||.+|-.+||++....-. ..|..|| +.+. .||+.||+.-+.+-.....+.+
T Consensus 1 kkR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia-~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k 70 (86)
T 2ebi_A 1 KKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQIS-SKMREKGFDRSPDMCTDKWRNLLKEFKKAK 70 (86)
T ss_dssp CCCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHH-HHHHHHHCCCCHHHHHHHHHHHHHHHCSCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999999875321 2799999 4543 7999999998876555444433
No 53
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.68 E-value=0.0024 Score=55.10 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=42.4
Q ss_pred ccCCCccCHHHHHHHHHHHHHcC--CCCHHhhhhh-hcCCCCHHHHHHHHHHHHHHH
Q 021351 89 RKRGVPWTEDEHRLFLLGLQKVG--KGDWRGISRN-FVKTRTPTQVASHAQKYFLRR 142 (313)
Q Consensus 89 rKkg~~WTeEEh~lFLegLekyG--kGdWk~IAr~-~V~TRT~~QVrSHAQKYFir~ 142 (313)
|++-..||+.|-+.|+.|+.+|| .++|..|++. -+..||...|+.+++.+..+.
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c 60 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC 60 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 45556799999999999999999 6899999842 256899999999887766554
No 54
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.32 E-value=0.013 Score=47.66 Aligned_cols=50 Identities=24% Similarity=0.392 Sum_probs=43.8
Q ss_pred cccCCCccCHHHHHHHHHHHHHcCC--CCHHhhhhhhcCCCCHHHHHHHHHHH
Q 021351 88 ERKRGVPWTEDEHRLFLLGLQKVGK--GDWRGISRNFVKTRTPTQVASHAQKY 138 (313)
Q Consensus 88 ~rKkg~~WTeEEh~lFLegLekyGk--GdWk~IAr~~V~TRT~~QVrSHAQKY 138 (313)
.-++-+.||.||++..|.+.++-|. ..|..|| ..++.|++.||..+.|..
T Consensus 29 ~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA-~~L~Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 29 TGEKVVLWTREADRVILTMCQEQGAQPHTFSVIS-QQLGNKTPVEVSHRFREL 80 (95)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHH-HHHSSCCHHHHHHHHHHH
T ss_pred CCCEEEEeccccCHHHHHHHHhcCCChhHHHHHH-HHHccCCHHHHHHHHHHH
Confidence 3345678999999999999999986 5899999 799999999999998754
No 55
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.35 E-value=0.042 Score=44.32 Aligned_cols=50 Identities=14% Similarity=0.172 Sum_probs=41.5
Q ss_pred ccCHHHHHHHHHHHHHcCCCCHHhhhhhhc----CCCCHHHHHHHHHHHHHHHhh
Q 021351 94 PWTEDEHRLFLLGLQKVGKGDWRGISRNFV----KTRTPTQVASHAQKYFLRRFN 144 (313)
Q Consensus 94 ~WTeEEh~lFLegLekyGkGdWk~IAr~~V----~TRT~~QVrSHAQKYFir~~~ 144 (313)
.||.||-..+++.+++|+- +|--|+..|- +.||..+++.++-..-.++.+
T Consensus 32 ~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~ 85 (93)
T 4iej_A 32 AWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp TBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5999999999999999998 9999996554 379999999997555555443
No 56
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.22 E-value=0.021 Score=55.51 Aligned_cols=49 Identities=20% Similarity=0.299 Sum_probs=44.1
Q ss_pred ccCHHHHHHHHHHHHHcCCCCHHhhhhhhcC-CCCHHHHHHHHHHHHHHHh
Q 021351 94 PWTEDEHRLFLLGLQKVGKGDWRGISRNFVK-TRTPTQVASHAQKYFLRRF 143 (313)
Q Consensus 94 ~WTeEEh~lFLegLekyGkGdWk~IAr~~V~-TRT~~QVrSHAQKYFir~~ 143 (313)
.||..+=..|+.|+++||+.+...|| ..|. +||+.+|+.+++-|+.|..
T Consensus 125 ~WnrrDF~~FI~a~~kyGR~d~~~IA-~ev~~~Kt~eEV~~Y~~vFw~Ry~ 174 (374)
T 2y9y_A 125 NWNKLEFRKFITVSGKYGRNSIQAIA-RELAPGKTLEEVRAYAKAFWSNIE 174 (374)
T ss_dssp CSCHHHHHHHHHHHHHHCTTCHHHHH-SSCCCSSSHHHHHHHHHHHHHTCS
T ss_pred ccCHHHHHHHHHHHHHhCHhHHHHHH-HHHccCCCHHHHHHHHHHHHHhhh
Confidence 59999999999999999999999999 7887 9999999998887776543
No 57
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=95.13 E-value=0.012 Score=54.83 Aligned_cols=27 Identities=37% Similarity=0.816 Sum_probs=25.5
Q ss_pred CccCHHHHHHHHHHHHHcCCCCHHhhh
Q 021351 93 VPWTEDEHRLFLLGLQKVGKGDWRGIS 119 (313)
Q Consensus 93 ~~WTeEEh~lFLegLekyGkGdWk~IA 119 (313)
..|+.+|+..||.||-+||.|.|..|.
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir 195 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIR 195 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHh
Confidence 459999999999999999999999995
No 58
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=93.92 E-value=0.0045 Score=47.90 Aligned_cols=46 Identities=26% Similarity=0.440 Sum_probs=39.6
Q ss_pred CCCccCHHHHHHHHHHHHHcCC--CCHHhhhhhhcCCCCHHHHHHHHHHH
Q 021351 91 RGVPWTEDEHRLFLLGLQKVGK--GDWRGISRNFVKTRTPTQVASHAQKY 138 (313)
Q Consensus 91 kg~~WTeEEh~lFLegLekyGk--GdWk~IAr~~V~TRT~~QVrSHAQKY 138 (313)
.-+.||.||++..|...++-|. .-|..|| ..+ .||+.||..++|..
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA-~~L-nks~~QV~~RF~~L 60 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPSSKTFAYLA-AKL-DKNPNQVSERFQQL 60 (70)
Confidence 3467999999999999999996 5899999 566 79999999987754
No 59
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=94.42 E-value=0.049 Score=43.09 Aligned_cols=47 Identities=32% Similarity=0.376 Sum_probs=35.0
Q ss_pred cCCCccCHHHHHHHHHHHHHcCC-C--------------CHHhhhhhhc-----CCCCHHHHHHHHHH
Q 021351 90 KRGVPWTEDEHRLFLLGLQKVGK-G--------------DWRGISRNFV-----KTRTPTQVASHAQK 137 (313)
Q Consensus 90 Kkg~~WTeEEh~lFLegLekyGk-G--------------dWk~IAr~~V-----~TRT~~QVrSHAQK 137 (313)
+....|.++=+..|++||+.|-. | +=..|| .|| .+||.+||-||-|-
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs-~yI~~~tGk~RtrKQVSShiQv 70 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIA-RYIKLRTGKTRTRKQVSSHIQV 70 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHH-HHHHHHHSCCCCSHHHHHHHHH
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHH-HHHHHHHcccCCccchhHHHHH
Confidence 34456999999999999999864 2 223344 344 58999999999873
No 60
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=94.07 E-value=0.026 Score=35.05 Aligned_cols=20 Identities=40% Similarity=0.934 Sum_probs=18.0
Q ss_pred CCccCCCCCCCCCCCCCCCC
Q 021351 2 SRSCSQCGNNGHNSRTCAEA 21 (313)
Q Consensus 2 ~R~CS~Cgn~GHNsRTC~~~ 21 (313)
.++|-.||..||-+|.|+..
T Consensus 2 ~~~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 2 GPVCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp CCBCTTTCCBSSCTTTTTCC
T ss_pred CCeeEeCCCCCcccccCCCc
Confidence 46899999999999999965
No 61
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=91.89 E-value=0.26 Score=48.01 Aligned_cols=50 Identities=26% Similarity=0.434 Sum_probs=42.3
Q ss_pred CCccCHHHHHHHHHHHHHcCC---CCHHhhhh-----------hhcCCCCHHHHHHHHHHHHHHH
Q 021351 92 GVPWTEDEHRLFLLGLQKVGK---GDWRGISR-----------NFVKTRTPTQVASHAQKYFLRR 142 (313)
Q Consensus 92 g~~WTeEEh~lFLegLekyGk---GdWk~IAr-----------~~V~TRT~~QVrSHAQKYFir~ 142 (313)
+..||+||++.+|-+|.+||- |.|..|-. -|+.+||+.++.-++. .++++
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~-tLi~~ 291 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGN-TLLQC 291 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHH-HHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH-HHHHH
Confidence 446999999999999999999 99999932 3589999999999886 55554
No 62
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=88.79 E-value=0.16 Score=32.13 Aligned_cols=18 Identities=39% Similarity=1.041 Sum_probs=16.4
Q ss_pred CccCCCCCCCCCCCCCCC
Q 021351 3 RSCSQCGNNGHNSRTCAE 20 (313)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~ 20 (313)
.+|-.||..||-+|.|+.
T Consensus 7 ~~C~nCgk~GH~ar~C~~ 24 (29)
T 1nc8_A 7 IRCWNCGKEGHSARQCRA 24 (29)
T ss_dssp CBCTTTSCBSSCGGGCCS
T ss_pred CEEEECCccccCHhHCcc
Confidence 469999999999999985
No 63
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=87.75 E-value=0.25 Score=34.03 Aligned_cols=20 Identities=25% Similarity=0.778 Sum_probs=17.6
Q ss_pred CccCCCCCCCCCCCCCCCCC
Q 021351 3 RSCSQCGNNGHNSRTCAEAG 22 (313)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~~~ 22 (313)
-+|-.||..||-+|+|+...
T Consensus 11 ~~C~~Cgk~GH~ardCP~~~ 30 (40)
T 1a6b_B 11 DQCAYCKEKGHWAKDCPKKP 30 (40)
T ss_dssp SSCSSSCCTTCCTTSCSSSC
T ss_pred CeeeECCCCCcchhhCcCCc
Confidence 47999999999999999654
No 64
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=83.25 E-value=0.54 Score=33.93 Aligned_cols=20 Identities=30% Similarity=0.870 Sum_probs=12.9
Q ss_pred CccCCCCCCCCCCCCCCCCC
Q 021351 3 RSCSQCGNNGHNSRTCAEAG 22 (313)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~~~ 22 (313)
.+|-.||..||-+|.|+...
T Consensus 31 ~~C~~Cg~~GH~ar~C~~~~ 50 (61)
T 2ihx_A 31 ERCQLCNGMGHNAKQCRKRD 50 (61)
T ss_dssp SBCTTTCCBSSCGGGCCCCC
T ss_pred CeeCCCCCCCCCcCCCcCCC
Confidence 34666777777777776544
No 65
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=82.63 E-value=0.45 Score=34.83 Aligned_cols=20 Identities=25% Similarity=0.778 Sum_probs=17.6
Q ss_pred CccCCCCCCCCCCCCCCCCC
Q 021351 3 RSCSQCGNNGHNSRTCAEAG 22 (313)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~~~ 22 (313)
-+|-.||..||-+|.|+...
T Consensus 24 ~~C~~Cge~GH~ardCp~~~ 43 (56)
T 1u6p_A 24 DQCAYCKEKGHWAKDCPKKP 43 (56)
T ss_dssp TBCSSSCCBSSCGGGCTTCC
T ss_pred CcceeCCCCCcccccCcCCc
Confidence 36999999999999999754
No 66
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=82.49 E-value=2 Score=39.80 Aligned_cols=28 Identities=11% Similarity=0.116 Sum_probs=25.2
Q ss_pred CHHhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 021351 114 DWRGISRNFVKTRTPTQVASHAQKYFLRR 142 (313)
Q Consensus 114 dWk~IAr~~V~TRT~~QVrSHAQKYFir~ 142 (313)
-|+.|| .+..+||...+|.++.|+..+.
T Consensus 173 ~fk~ia-~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 173 FFKHFA-EEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp HHHHHH-HHTTTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHH-HHCCCCChhhHHHHHHHHHhhc
Confidence 699999 7999999999999999887554
No 67
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=81.31 E-value=0.85 Score=30.10 Aligned_cols=16 Identities=44% Similarity=1.209 Sum_probs=9.4
Q ss_pred ccCCCCCCCCCCCCCC
Q 021351 4 SCSQCGNNGHNSRTCA 19 (313)
Q Consensus 4 ~CS~Cgn~GHNsRTC~ 19 (313)
+|-.||..||-+|.|+
T Consensus 2 ~C~~Cg~~GH~a~~C~ 17 (39)
T 2a51_A 2 TCFNCGKPGHTARMCR 17 (39)
T ss_dssp BCTTTCCBSSCTTTCC
T ss_pred eeeccCCCCcccccCC
Confidence 3555666666666665
No 68
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=80.99 E-value=0.65 Score=30.35 Aligned_cols=17 Identities=41% Similarity=1.024 Sum_probs=11.3
Q ss_pred ccCCCCCCCCCCCCCCC
Q 021351 4 SCSQCGNNGHNSRTCAE 20 (313)
Q Consensus 4 ~CS~Cgn~GHNsRTC~~ 20 (313)
+|-.||..||-+|.|+.
T Consensus 2 ~C~~Cg~~GH~~~~C~~ 18 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRA 18 (37)
T ss_dssp CBSSSCCSSCCTTTSSC
T ss_pred cccccCCCCcchhhCcC
Confidence 46667777777776653
No 69
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=79.45 E-value=1 Score=29.44 Aligned_cols=17 Identities=35% Similarity=0.880 Sum_probs=15.0
Q ss_pred ccCCCCCCCCCCCCCCC
Q 021351 4 SCSQCGNNGHNSRTCAE 20 (313)
Q Consensus 4 ~CS~Cgn~GHNsRTC~~ 20 (313)
+|-.||..||-+|.|++
T Consensus 21 ~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 21 VCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp TCSSCCCTTGGGGTTCC
T ss_pred eEccCCCcCCccCcCcC
Confidence 57789999999999983
No 70
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=77.94 E-value=0.96 Score=31.67 Aligned_cols=17 Identities=35% Similarity=1.064 Sum_probs=10.6
Q ss_pred ccCCCCCCCCCCCCCCC
Q 021351 4 SCSQCGNNGHNSRTCAE 20 (313)
Q Consensus 4 ~CS~Cgn~GHNsRTC~~ 20 (313)
+|-.||..||-+|.|+.
T Consensus 14 ~C~~Cg~~GH~a~~C~~ 30 (55)
T 1a1t_A 14 KCFNCGKEGHIAKNCRA 30 (55)
T ss_dssp BCTTTCCBSSCGGGCSS
T ss_pred ceeeeCCCCcChhhcCC
Confidence 56666666666666653
No 71
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=77.36 E-value=1.1 Score=32.38 Aligned_cols=21 Identities=29% Similarity=0.748 Sum_probs=18.5
Q ss_pred CCCccCCCCCCCCCCCCCCCC
Q 021351 1 MSRSCSQCGNNGHNSRTCAEA 21 (313)
Q Consensus 1 m~R~CS~Cgn~GHNsRTC~~~ 21 (313)
+..+|-.||..||-+|.|+..
T Consensus 3 ~~~~C~~Cg~~GH~a~~C~~~ 23 (61)
T 2ihx_A 3 ARGLCYTCGSPGHYQAQCPKK 23 (61)
T ss_dssp CTTBCSSSCCBTCCGGGCTTT
T ss_pred CCCcccccCCCCeehhhCcCC
Confidence 457899999999999999964
No 72
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=76.37 E-value=1.2 Score=29.36 Aligned_cols=15 Identities=33% Similarity=0.946 Sum_probs=13.8
Q ss_pred cCCCCCCCCCCCCCC
Q 021351 5 CSQCGNNGHNSRTCA 19 (313)
Q Consensus 5 CS~Cgn~GHNsRTC~ 19 (313)
|-.||..||-+|.|+
T Consensus 24 C~~Cg~~GH~~~~C~ 38 (39)
T 2a51_A 24 CWNCGSKEHRFAQCP 38 (39)
T ss_dssp CTTTCCSSSCTTTSC
T ss_pred cccCCCCCCccCcCc
Confidence 668999999999998
No 73
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=75.80 E-value=1.3 Score=30.68 Aligned_cols=18 Identities=39% Similarity=1.041 Sum_probs=15.4
Q ss_pred CccCCCCCCCCCCCCCCC
Q 021351 3 RSCSQCGNNGHNSRTCAE 20 (313)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~ 20 (313)
.+|-.||..||-+|.|+.
T Consensus 7 ~~C~~Cg~~GH~a~~C~~ 24 (49)
T 2ec7_A 7 IRCWNCGKEGHSARQCRA 24 (49)
T ss_dssp CBCTTTCCBTCCTTTCCC
T ss_pred CeeeecCCCCcChhhCcC
Confidence 578889999999999985
No 74
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=75.76 E-value=1.3 Score=30.62 Aligned_cols=19 Identities=37% Similarity=0.952 Sum_probs=16.7
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 021351 3 RSCSQCGNNGHNSRTCAEA 21 (313)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~~ 21 (313)
..|-.||..||-+|.|+..
T Consensus 28 ~~C~~Cg~~GH~~~~C~~~ 46 (49)
T 2ec7_A 28 QGCWKCGKTGHVMAKCPER 46 (49)
T ss_dssp CSCSSSCCSSCCGGGCCSS
T ss_pred CeeCcCCCcCCccCCCcCC
Confidence 4689999999999999964
No 75
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=74.54 E-value=7 Score=36.27 Aligned_cols=44 Identities=11% Similarity=0.083 Sum_probs=34.2
Q ss_pred CccCHHHHHHHHHHHHHcCC--CCHHhhhhh-hcCCCCHHHHHHHHH
Q 021351 93 VPWTEDEHRLFLLGLQKVGK--GDWRGISRN-FVKTRTPTQVASHAQ 136 (313)
Q Consensus 93 ~~WTeEEh~lFLegLekyGk--GdWk~IAr~-~V~TRT~~QVrSHAQ 136 (313)
..||+.|-+.|+.+|.+||. ++|..|++. -+..|+...++.-++
T Consensus 4 ~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~ 50 (270)
T 2xb0_X 4 GSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYD 50 (270)
T ss_dssp CCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHH
Confidence 45999999999999999994 799999642 345688777664443
No 76
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=73.22 E-value=1.5 Score=30.73 Aligned_cols=19 Identities=37% Similarity=1.092 Sum_probs=16.8
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 021351 3 RSCSQCGNNGHNSRTCAEA 21 (313)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~~ 21 (313)
..|-.||..||-+|.|+..
T Consensus 34 ~~C~~Cg~~GH~~~~C~~~ 52 (55)
T 1a1t_A 34 KGCWKCGKEGHQMKDCTER 52 (55)
T ss_dssp CBCTTTCCBSSCGGGCSSS
T ss_pred CEeCCCCCcCCccCCCcCc
Confidence 4699999999999999964
No 77
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=71.30 E-value=0.83 Score=32.54 Aligned_cols=20 Identities=40% Similarity=0.979 Sum_probs=0.0
Q ss_pred CCccCCCCCCCCCCCCCCCC
Q 021351 2 SRSCSQCGNNGHNSRTCAEA 21 (313)
Q Consensus 2 ~R~CS~Cgn~GHNsRTC~~~ 21 (313)
+++|-.||..||-+|.|+..
T Consensus 1 G~~Cf~Cg~~GH~a~~C~~~ 20 (60)
T 1cl4_A 1 GGSCFKCGKKGHFAKNCHEH 20 (60)
T ss_dssp --------------------
T ss_pred CCccccCCCCCcCHhhCcCC
Confidence 46788999999999999854
No 78
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=69.56 E-value=2.6 Score=29.93 Aligned_cols=20 Identities=20% Similarity=0.564 Sum_probs=17.8
Q ss_pred CccCCCCCCCCCCCCCCCCC
Q 021351 3 RSCSQCGNNGHNSRTCAEAG 22 (313)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~~~ 22 (313)
..|-.||..||-+|.|+...
T Consensus 31 ~~C~~Cg~~GH~ar~C~~~~ 50 (60)
T 1cl4_A 31 GLCPRCKRGKHWANECKSKT 50 (60)
T ss_dssp CSCSSCSSCSSCSTTCCCTT
T ss_pred cceeECCCCCCccCcCCCcc
Confidence 67999999999999999653
No 79
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=63.55 E-value=3.4 Score=32.02 Aligned_cols=20 Identities=35% Similarity=0.803 Sum_probs=17.9
Q ss_pred CccCCCCCCCCCCCCCCCCC
Q 021351 3 RSCSQCGNNGHNSRTCAEAG 22 (313)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~~~ 22 (313)
..|-.||..||=+|.|+...
T Consensus 47 ~~CYnCG~~GH~~rdC~~~r 66 (83)
T 3nyb_B 47 IYCYNCGGKGHFGDDCKEKR 66 (83)
T ss_dssp CBCSSSSCBSSCGGGCSSCC
T ss_pred CeecccCCCCcCcccCCccc
Confidence 57999999999999999764
No 80
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.01 E-value=3.7 Score=29.75 Aligned_cols=19 Identities=21% Similarity=0.576 Sum_probs=14.7
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 021351 3 RSCSQCGNNGHNSRTCAEA 21 (313)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~~ 21 (313)
.+|-.||..||-+|.|+..
T Consensus 30 ~~C~~Cg~~GH~ar~Cp~~ 48 (63)
T 2cqf_A 30 KKCHFCQSISHMVASCPLK 48 (63)
T ss_dssp SCCTTTCCSSSCTTTCTGG
T ss_pred CccCCcCCcCCccCcCCCc
Confidence 4677888888888888854
No 81
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.00 E-value=3.8 Score=29.70 Aligned_cols=18 Identities=28% Similarity=0.826 Sum_probs=16.5
Q ss_pred CccCCCCCCCCCCCCCCC
Q 021351 3 RSCSQCGNNGHNSRTCAE 20 (313)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~ 20 (313)
.+|-.||..||-+|.|+.
T Consensus 8 ~~C~~Cg~~GH~a~~C~~ 25 (63)
T 2cqf_A 8 DRCYNCGGLDHHAKECKL 25 (63)
T ss_dssp CCCSSSCCSSSCTTTCCS
T ss_pred CcccccCCCCcChhhCCC
Confidence 579999999999999994
No 82
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=61.34 E-value=3.8 Score=31.00 Aligned_cols=17 Identities=24% Similarity=0.599 Sum_probs=9.1
Q ss_pred ccCCCCCCCCCCCCCCC
Q 021351 4 SCSQCGNNGHNSRTCAE 20 (313)
Q Consensus 4 ~CS~Cgn~GHNsRTC~~ 20 (313)
.|-.||..||-+|.|+.
T Consensus 48 ~C~~Cg~~GH~ar~Cp~ 64 (74)
T 2li8_A 48 KCHFCQSISHMVASCPL 64 (74)
T ss_dssp CCTTTCCTTSCGGGCTT
T ss_pred ccCCcCCcCCccCcCcC
Confidence 44555555555555553
No 83
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=59.31 E-value=4.5 Score=30.54 Aligned_cols=18 Identities=28% Similarity=0.826 Sum_probs=16.4
Q ss_pred CccCCCCCCCCCCCCCCC
Q 021351 3 RSCSQCGNNGHNSRTCAE 20 (313)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~ 20 (313)
.+|-.||..||-+|.|+.
T Consensus 25 ~~C~~Cg~~GH~a~~C~~ 42 (74)
T 2li8_A 25 DRCYNCGGLDHHAKECKL 42 (74)
T ss_dssp SCCTTTCCSSSCTTTCSS
T ss_pred CcccccCCcCcCcccCCC
Confidence 479999999999999995
No 84
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=57.07 E-value=4.3 Score=34.06 Aligned_cols=18 Identities=28% Similarity=0.826 Sum_probs=16.4
Q ss_pred CccCCCCCCCCCCCCCCC
Q 021351 3 RSCSQCGNNGHNSRTCAE 20 (313)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~ 20 (313)
.+|-.||..||-+|.|+.
T Consensus 98 ~~C~~Cg~~GH~a~~C~~ 115 (148)
T 3ts2_A 98 DRCYNCGGLDHHAKECKL 115 (148)
T ss_dssp CCCTTTCCSSCCGGGCCS
T ss_pred CcccEeCCccchhhhCCC
Confidence 369999999999999995
No 85
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=54.85 E-value=5.9 Score=31.56 Aligned_cols=20 Identities=20% Similarity=0.584 Sum_probs=16.7
Q ss_pred CccCCCCCCCCCCCCCCCCC
Q 021351 3 RSCSQCGNNGHNSRTCAEAG 22 (313)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~~~ 22 (313)
..|-.||..||-+|.|+...
T Consensus 65 ~~C~~Cg~~GH~~~~Cp~~~ 84 (124)
T 2lli_A 65 VQCTLCKSKKHSKERCPSIW 84 (124)
T ss_dssp CSSSSSCSSCCCTTTCCCST
T ss_pred ccCCCCCcCCcchhhCCCcc
Confidence 57888999999999999653
No 86
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=53.13 E-value=4.6 Score=31.25 Aligned_cols=19 Identities=21% Similarity=0.684 Sum_probs=16.5
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 021351 3 RSCSQCGNNGHNSRTCAEA 21 (313)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~~ 21 (313)
..|-.||..||-+|.||+.
T Consensus 6 ~~C~~Cg~~GH~~~~Cp~~ 24 (83)
T 3nyb_B 6 VQCTLCKSKKHSKERCPSI 24 (83)
T ss_dssp -CCSSSCCSSSCGGGCGGG
T ss_pred CCCCCCCCCCCccccCCCc
Confidence 4799999999999999963
No 87
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.86 E-value=7.4 Score=28.24 Aligned_cols=20 Identities=30% Similarity=0.871 Sum_probs=17.5
Q ss_pred CCccCCCCCCCCCCCCCCCC
Q 021351 2 SRSCSQCGNNGHNSRTCAEA 21 (313)
Q Consensus 2 ~R~CS~Cgn~GHNsRTC~~~ 21 (313)
...|=-||.-||-.+-|++.
T Consensus 7 ~~~C~kCGk~GH~~k~Cp~~ 26 (55)
T 2ysa_A 7 GYTCFRCGKPGHYIKNCPTN 26 (55)
T ss_dssp SCCCTTTCCTTSCGGGCSGG
T ss_pred CCccccCCCcCcccccCCCC
Confidence 35799999999999999954
No 88
>2lc3_A E3 ubiquitin-protein ligase hectd1; helical bundle, structural genomics, northeast structural GE consortium, NESG, structural genomics consortium; NMR {Homo sapiens}
Probab=49.76 E-value=34 Score=27.36 Aligned_cols=52 Identities=17% Similarity=0.241 Sum_probs=37.0
Q ss_pred ccccCCCccCHHH-----------HHHHHHHHHHcCC----------CCHHhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 021351 87 RERKRGVPWTEDE-----------HRLFLLGLQKVGK----------GDWRGISRNFVKTRTPTQVASHAQKYFLRR 142 (313)
Q Consensus 87 ~~rKkg~~WTeEE-----------h~lFLegLekyGk----------GdWk~IAr~~V~TRT~~QVrSHAQKYFir~ 142 (313)
++.-+++.||.|+ ..-++..|+..|. |+-+ +..+|+...|...-|.++|..-
T Consensus 8 ~~~~~~~~Ws~Eq~~~~L~Sd~lpKkdiIkfLq~na~~~FL~e~KLlGniK----NVaKtanK~qLiaAY~~lfE~~ 80 (88)
T 2lc3_A 8 KENGKMGCWSIEHVEQYLGTDELPKNDLITYLQKNADAAFLRHWKLTGTNK----SIRKNRNCSQLIAAYKDFCEHG 80 (88)
T ss_dssp HCSCCCCCCCHHHHHHHBTSSSBCHHHHHHHHHHHSCHHHHHHTTCSSCHH----HHHHHSCHHHHHHHHHHHHHHT
T ss_pred cccCccCcchHHHHhcccccccccHHHHHHHHHHcchHHHHHHHHHhccHH----HHHhcCcHHHHHHHHHHHHhcc
Confidence 4556788899999 4456677777775 3444 4446999999999887777543
No 89
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=47.30 E-value=41 Score=27.14 Aligned_cols=33 Identities=9% Similarity=0.067 Sum_probs=24.3
Q ss_pred CCHHhhhhhhcCC-CC---HHHHHHHHHHHHHHHhhcc
Q 021351 113 GDWRGISRNFVKT-RT---PTQVASHAQKYFLRRFNQN 146 (313)
Q Consensus 113 GdWk~IAr~~V~T-RT---~~QVrSHAQKYFir~~~~~ 146 (313)
+.|+.|++ .++- .+ ..+++.|++||+.-.....
T Consensus 64 k~W~~V~~-~lg~~~~~~~~~~Lr~~Y~k~L~~yE~~~ 100 (122)
T 2eqy_A 64 RKWTKIAT-KMGFAPGKAVGSHIRGHYERILNPYNLFL 100 (122)
T ss_dssp TTHHHHHH-HTTCCSSSHHHHHHHHHHHHTHHHHHHHH
T ss_pred CcHHHHHH-HhCCCCCCcHHHHHHHHHHHHhHHHHHHH
Confidence 58999995 4443 22 4699999999988877644
No 90
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=46.06 E-value=10 Score=30.15 Aligned_cols=18 Identities=28% Similarity=0.922 Sum_probs=12.2
Q ss_pred CccCCCCCCCCCCCCCCC
Q 021351 3 RSCSQCGNNGHNSRTCAE 20 (313)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~ 20 (313)
+.|-.|+..||.+|.|+.
T Consensus 5 ~~C~~C~~~GH~~~~Cp~ 22 (124)
T 2lli_A 5 PKCNNCSQRGHLKKDCPH 22 (124)
T ss_dssp SCCSSCSSSSCCTTTTTS
T ss_pred CcccCCCCCCcCcccCcC
Confidence 456777777777777764
No 91
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=45.07 E-value=21 Score=28.46 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=24.3
Q ss_pred CCHHhhhhhhcCCCCHHHHHHHHHHHHHHHhh
Q 021351 113 GDWRGISRNFVKTRTPTQVASHAQKYFLRRFN 144 (313)
Q Consensus 113 GdWk~IAr~~V~TRT~~QVrSHAQKYFir~~~ 144 (313)
+.|+.|+ .-++--...+++.|+.+|+.-...
T Consensus 71 ~~W~~Va-~~lg~~~~~~Lr~~Y~k~L~~yE~ 101 (116)
T 2li6_A 71 QQWSMVA-QRLQISDYQQLESIYFRILLPYER 101 (116)
T ss_dssp TCHHHHH-HHHTSCCTTHHHHHHHHHHSHHHH
T ss_pred CcHHHHH-HHhCCChHHHHHHHHHHHHHHHHH
Confidence 4899999 466555589999999999776554
No 92
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=42.58 E-value=51 Score=25.56 Aligned_cols=33 Identities=6% Similarity=0.137 Sum_probs=23.6
Q ss_pred CCHHhhhhhhcCCCC---HHHHHHHHHHHHHHHhhc
Q 021351 113 GDWRGISRNFVKTRT---PTQVASHAQKYFLRRFNQ 145 (313)
Q Consensus 113 GdWk~IAr~~V~TRT---~~QVrSHAQKYFir~~~~ 145 (313)
+.|+.|++.+--..+ ..+++.|+.||+.-....
T Consensus 66 ~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~yE~~ 101 (107)
T 2lm1_A 66 RKWAKVANRMQYPSSKSVGATLKAHYERILHPFEVY 101 (107)
T ss_dssp TTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHHH
Confidence 589999954432233 579999999998776654
No 93
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=38.51 E-value=42 Score=27.11 Aligned_cols=34 Identities=12% Similarity=0.192 Sum_probs=24.6
Q ss_pred CCHHhhhhhhcCCC----CHHHHHHHHHHHHHHHhhcc
Q 021351 113 GDWRGISRNFVKTR----TPTQVASHAQKYFLRRFNQN 146 (313)
Q Consensus 113 GdWk~IAr~~V~TR----T~~QVrSHAQKYFir~~~~~ 146 (313)
+.|+.|++.+--.. ...+++.|+.+|+.......
T Consensus 74 k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~~~ 111 (128)
T 1c20_A 74 KLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEK 111 (128)
T ss_dssp TTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHHHHH
T ss_pred CcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 48999995443222 36899999999988776544
No 94
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=37.33 E-value=50 Score=26.57 Aligned_cols=32 Identities=13% Similarity=0.294 Sum_probs=23.5
Q ss_pred CCHHhhhhhhcCCCC----HHHHHHHHHHHHHHHhhc
Q 021351 113 GDWRGISRNFVKTRT----PTQVASHAQKYFLRRFNQ 145 (313)
Q Consensus 113 GdWk~IAr~~V~TRT----~~QVrSHAQKYFir~~~~ 145 (313)
+.|+.|++ .++--+ ..+++.||.||+......
T Consensus 73 ~~W~~Va~-~lg~~~~~s~~~~Lk~~Y~k~L~~yE~~ 108 (125)
T 2cxy_A 73 KKWRELAT-NLNVGTSSSAASSLKKQYIQYLFAFECK 108 (125)
T ss_dssp TCHHHHHH-HTTSCSSHHHHHHHHHHHHHHTHHHHHH
T ss_pred CcHHHHHH-HhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 58999995 444322 578999999998777654
No 95
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=35.80 E-value=47 Score=26.52 Aligned_cols=32 Identities=9% Similarity=0.125 Sum_probs=23.5
Q ss_pred CCHHhhhhhhcCCC----CHHHHHHHHHHHHHHHhhc
Q 021351 113 GDWRGISRNFVKTR----TPTQVASHAQKYFLRRFNQ 145 (313)
Q Consensus 113 GdWk~IAr~~V~TR----T~~QVrSHAQKYFir~~~~ 145 (313)
+.|+.|++ -++-- ...+++.|+.+|+.-....
T Consensus 62 ~~W~~Va~-~lg~~~~~~a~~~Lk~~Y~k~L~~yE~~ 97 (117)
T 2jrz_A 62 RRWARVAQ-RLNYPPGKNIGSLLRSHYERIVYPYEMY 97 (117)
T ss_dssp TTHHHHHH-HTTCCTTCTHHHHHHHHHHHTTHHHHHH
T ss_pred CcHHHHHH-HhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 58999995 54432 2678999999997776654
No 96
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=31.06 E-value=45 Score=27.15 Aligned_cols=31 Identities=13% Similarity=0.149 Sum_probs=25.3
Q ss_pred CCHHhhhhhhcCCCCHHHHHHHHHHHHHHHhh
Q 021351 113 GDWRGISRNFVKTRTPTQVASHAQKYFLRRFN 144 (313)
Q Consensus 113 GdWk~IAr~~V~TRT~~QVrSHAQKYFir~~~ 144 (313)
+.|+.|++ -++--...+++.||.||+.-...
T Consensus 70 k~W~~Va~-~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 70 QQWSMVAQ-RLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHHHH-HHTCCCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHH-HHCCChHHHHHHHHHHHHHHHHH
Confidence 48999994 55554599999999999888775
No 97
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=30.88 E-value=27 Score=28.63 Aligned_cols=34 Identities=9% Similarity=0.197 Sum_probs=24.6
Q ss_pred CCHHhhhhhhcCCC----CHHHHHHHHHHHHHHHhhcc
Q 021351 113 GDWRGISRNFVKTR----TPTQVASHAQKYFLRRFNQN 146 (313)
Q Consensus 113 GdWk~IAr~~V~TR----T~~QVrSHAQKYFir~~~~~ 146 (313)
+.|+.|++.+--.. ...+++.||.||+.......
T Consensus 64 k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE~~~ 101 (121)
T 2rq5_A 64 KKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDSLS 101 (121)
T ss_dssp TCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHHHCC
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHHCcC
Confidence 58999995442222 35799999999988877543
No 98
>3o2i_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Leptospirillum rubarum}
Probab=30.62 E-value=30 Score=28.73 Aligned_cols=26 Identities=38% Similarity=0.690 Sum_probs=21.8
Q ss_pred CCccCHHHH-HHHHHHHHHcCCCCHHh
Q 021351 92 GVPWTEDEH-RLFLLGLQKVGKGDWRG 117 (313)
Q Consensus 92 g~~WTeEEh-~lFLegLekyGkGdWk~ 117 (313)
...||+||- +++|+|++.--..+|+.
T Consensus 48 ~~~~TE~EF~~LLLEA~~~sSsS~W~~ 74 (125)
T 3o2i_A 48 SEYWTEDEFYNLLLEAFQRSSASDWHL 74 (125)
T ss_dssp SSCCCHHHHHHHHHHHHTTSCSCCHHH
T ss_pred cccccHHHHHHHHHHHHHhccCCcHHH
Confidence 356999995 78899999998889984
No 99
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=29.49 E-value=58 Score=27.02 Aligned_cols=33 Identities=15% Similarity=0.253 Sum_probs=23.9
Q ss_pred CCHHhhhhhhcCCC----CHHHHHHHHHHHHHHHhhc
Q 021351 113 GDWRGISRNFVKTR----TPTQVASHAQKYFLRRFNQ 145 (313)
Q Consensus 113 GdWk~IAr~~V~TR----T~~QVrSHAQKYFir~~~~ 145 (313)
..|+.|++.+--.. ...+++.||.+|+.-....
T Consensus 86 ~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~ 122 (145)
T 2kk0_A 86 KLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECE 122 (145)
T ss_dssp TCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHH
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 58999995443222 3679999999997776654
No 100
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=29.06 E-value=29 Score=27.06 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=21.6
Q ss_pred CCHHhhhhhhcC----CCCHHHHHHHHHHHHHHHh
Q 021351 113 GDWRGISRNFVK----TRTPTQVASHAQKYFLRRF 143 (313)
Q Consensus 113 GdWk~IAr~~V~----TRT~~QVrSHAQKYFir~~ 143 (313)
+.|+.|++.+-- |-...+++.|+.+|+.-..
T Consensus 55 ~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~yE 89 (107)
T 1ig6_A 55 RQWKHIYDELGGNPGSTSAATCTRRHYERLILPYE 89 (107)
T ss_dssp TTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTTH
T ss_pred CcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 589999954432 2235789999999965544
No 101
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=28.37 E-value=54 Score=24.93 Aligned_cols=32 Identities=13% Similarity=0.154 Sum_probs=22.0
Q ss_pred CCHHhhhhhhcCCC---CHHHHHHHHHHHHHHHhh
Q 021351 113 GDWRGISRNFVKTR---TPTQVASHAQKYFLRRFN 144 (313)
Q Consensus 113 GdWk~IAr~~V~TR---T~~QVrSHAQKYFir~~~ 144 (313)
+.|+.|++.+--.. ...+++.|+.+|+.-...
T Consensus 58 ~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~yE~ 92 (96)
T 2jxj_A 58 KKWSKVGSRLGYLPGKGTGSLLKSHYERILYPYEL 92 (96)
T ss_dssp TTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHHHHH
T ss_pred CcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHHHH
Confidence 58999995433222 267899999999766543
No 102
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=25.49 E-value=12 Score=23.99 Aligned_cols=17 Identities=53% Similarity=0.911 Sum_probs=11.1
Q ss_pred cCCccccCCCccCHHHH
Q 021351 84 GRSRERKRGVPWTEDEH 100 (313)
Q Consensus 84 ~~~~~rKkg~~WTeEEh 100 (313)
.+++.||+-..|.++|+
T Consensus 3 rrrrprkrplewdedee 19 (28)
T 3ukw_C 3 RRRRPRKRPLEWDEDEE 19 (28)
T ss_dssp ----CCCCCCCCCGGGS
T ss_pred cccccccCCcccccccC
Confidence 46678888899998875
No 103
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=22.45 E-value=1.3e+02 Score=23.56 Aligned_cols=25 Identities=8% Similarity=0.428 Sum_probs=13.8
Q ss_pred CccccCCCccCHHHHHHHHHHHHHc
Q 021351 86 SRERKRGVPWTEDEHRLFLLGLQKV 110 (313)
Q Consensus 86 ~~~rKkg~~WTeEEh~lFLegLeky 110 (313)
++.|+....||.+.-..+...++.-
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~~ 31 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYERQ 31 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTTC
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcC
Confidence 4556677889998777776666543
No 104
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=20.79 E-value=1.9e+02 Score=19.79 Aligned_cols=44 Identities=16% Similarity=0.208 Sum_probs=30.8
Q ss_pred cCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 021351 95 WTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRF 143 (313)
Q Consensus 95 WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYFir~~ 143 (313)
+|+.|.+.|.. + ..|. ..+.|| +.++ -+...|+.|-..-+.++.
T Consensus 17 L~~~e~~vl~l-~-~~g~-s~~eIA-~~l~-is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 17 LSERERQVLSA-V-VAGL-PNKSIA-YDLD-ISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HCHHHHHHHHH-H-TTTC-CHHHHH-HHTT-SCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHH-H-HcCC-CHHHHH-HHHC-cCHHHHHHHHHHHHHHHc
Confidence 78888888776 4 5676 899999 4554 367777777665555544
Done!