Query 021353
Match_columns 313
No_of_seqs 180 out of 791
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 16:24:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021353.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021353hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 9.7E-39 3.3E-43 282.3 10.6 117 4-134 44-170 (174)
2 1ut7_A No apical meristem prot 100.0 1.6E-38 5.4E-43 280.3 8.8 117 3-133 45-166 (171)
3 2oh5_A Polyhedrin, C-polyhedri 16.9 78 0.0027 27.7 2.7 25 66-90 142-167 (248)
4 2zvv_Y Cyclin-dependent kinase 10.2 1.2E+02 0.0039 18.4 1.3 10 86-95 16-25 (26)
5 1zld_A PTR TOXA, PTR necrosis 8.4 5.4E+02 0.019 20.0 4.9 51 46-109 62-115 (118)
6 3alz_B CDW150; viral protein-r 6.6 1.6E+02 0.0055 24.7 1.1 25 15-39 94-122 (149)
7 1m5a_B Insulin B chain; alpha 4.7 1.9E+02 0.0064 18.2 0.3 10 31-40 20-29 (30)
8 3bf4_A Ethyl TERT-butyl ether 3.9 4E+02 0.014 21.4 1.8 22 289-310 71-94 (127)
9 1ews_A RK-1 defensin, alpha-de 3.7 2.3E+02 0.0079 17.6 0.1 9 18-26 8-16 (32)
10 3lo3_A Uncharacterized conserv 3.4 4.5E+02 0.015 19.6 1.6 18 295-312 54-72 (94)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=9.7e-39 Score=282.34 Aligned_cols=117 Identities=26% Similarity=0.537 Sum_probs=98.9
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCCC-CeEEEeeecccccccCCcccccccCCCCCCCCCceEeecCCcceEEeCCee
Q 021353 4 DEFIPTIEGDQGICYTHPENLPGAKKDG-SSVHFFHRTTNAYATGQRKRRKIQSEHSLNEEHVRWHKTGKTKPVIENGIQ 82 (313)
Q Consensus 4 d~fIptvd~d~dIy~~~PwdLPg~~~~G-~~wYFFs~~~~ky~~G~R~~R~t~~G~~~~~~~G~Wk~tGk~k~I~~~g~~ 82 (313)
.+||+++| ||.+|||+||+.+..| .+||||+++.+||++|.|++|+|++| |||+||++++|..+|.+
T Consensus 44 ~~~I~evD----vy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR~t~~G--------~WkatG~dk~I~~~g~~ 111 (174)
T 3ulx_A 44 VPIIAEVD----LYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRAAGNG--------YWKATGADKPVAPRGRT 111 (174)
T ss_dssp SSCCEECC----GGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCEEETTE--------EEEECSCCEEECCSSSC
T ss_pred cCeeeecc----cccCCchhhhhhhccCCceEEEEeccccccCCCCCceeecCCc--------eEccCCCCcEEeeCCcE
Confidence 46788877 9999999999987655 48999999999999999999999764 99999999999998999
Q ss_pred eEEEEEEEEEeccCCCCCCCCCCeEEEEEEeCCCCCC---------CCCCeEEEEEEEeCC
Q 021353 83 KGCRKIMVLYKSTKKGTKPDKSNWVMHQYHLGTDEDE---------KDDEYVVSKVFYQQT 134 (313)
Q Consensus 83 VG~KK~LvFY~g~~~g~kg~KT~WvMHEY~L~~~~~~---------~~~e~VLCKIf~k~~ 134 (313)
||+||+||||.++ ++++.||+||||||+|...... ..++|||||||+|+.
T Consensus 112 vG~KktLvFy~g~--~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K~~ 170 (174)
T 3ulx_A 112 LGIKKALVFYAGK--APRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKN 170 (174)
T ss_dssp CEEEEEEEEEESS--TTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEESCC
T ss_pred EEEEEEEEEecCC--CCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEcCC
Confidence 9999999999998 6788999999999999987531 357999999999864
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=1.6e-38 Score=280.25 Aligned_cols=117 Identities=29% Similarity=0.506 Sum_probs=96.4
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCCCC-CeEEEeeecccccccCCcccccccCCCCCCCCCceEeecCCcceEEeCCe
Q 021353 3 IDEFIPTIEGDQGICYTHPENLPGAKKDG-SSVHFFHRTTNAYATGQRKRRKIQSEHSLNEEHVRWHKTGKTKPVIENGI 81 (313)
Q Consensus 3 id~fIptvd~d~dIy~~~PwdLPg~~~~G-~~wYFFs~~~~ky~~G~R~~R~t~~G~~~~~~~G~Wk~tGk~k~I~~~g~ 81 (313)
..+||+++| ||++|||+||+.+..| .+||||+++.++|++|.|++|+|++ ||||+||++++|..+|.
T Consensus 45 ~~~~I~e~D----iy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~R~t~~--------G~Wk~tG~~k~I~~~~~ 112 (171)
T 1ut7_A 45 SLQLIAEID----LYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRVAGS--------GYWKATGTDKIISTEGQ 112 (171)
T ss_dssp SSCCSEECC----GGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCEEETT--------EEEEEEEEEEEEEETTE
T ss_pred CCCeEeecc----cccCChhHhhchhhcCCccEEEEeccccccCCCCcccccCCC--------CEEeccCCCceEEecCc
Confidence 456888887 9999999999987655 5899999999999999999999966 49999999999999999
Q ss_pred eeEEEEEEEEEeccCCCCCCCCCCeEEEEEEeCCCCC----CCCCCeEEEEEEEeC
Q 021353 82 QKGCRKIMVLYKSTKKGTKPDKSNWVMHQYHLGTDED----EKDDEYVVSKVFYQQ 133 (313)
Q Consensus 82 ~VG~KK~LvFY~g~~~g~kg~KT~WvMHEY~L~~~~~----~~~~e~VLCKIf~k~ 133 (313)
+||+||+||||.++ ++++.||+|+||||+|..... ...++|||||||+|+
T Consensus 113 ~vG~KktLvFy~g~--~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~ 166 (171)
T 1ut7_A 113 RVGIKKALVFYIGK--APKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ 166 (171)
T ss_dssp EEEEEEEEEEEESS--TTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC
T ss_pred EEEEEEEEEEEcCc--CCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcC
Confidence 99999999999998 678899999999999998752 246899999999985
No 3
>2oh5_A Polyhedrin, C-polyhedrin; beta barrel, intracellular crystal, nucleotide binding, STRU protein, RNA binding protein; HET: GTP ATP CTP; 1.98A {Bombyx mori cypovirus 1} PDB: 2oh6_A* 2oh7_A*
Probab=16.86 E-value=78 Score=27.66 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=20.5
Q ss_pred eEeecC-CcceEEeCCeeeEEEEEEE
Q 021353 66 RWHKTG-KTKPVIENGIQKGCRKIMV 90 (313)
Q Consensus 66 ~Wk~tG-k~k~I~~~g~~VG~KK~Lv 90 (313)
-|.+|| +-+.|..+|.+||.-..|.
T Consensus 142 pweatgikyrki~~dgeivgyshyfe 167 (248)
T 2oh5_A 142 PWEATGIKYRKIKRDGEIVGYSHYFE 167 (248)
T ss_dssp SCBCCGGGCEEEEETTEEEEEEEEEE
T ss_pred CccccCceEEEeeecceEeeeeeeee
Confidence 599999 5677888999999876654
No 4
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=10.22 E-value=1.2e+02 Score=18.38 Aligned_cols=10 Identities=0% Similarity=0.178 Sum_probs=5.8
Q ss_pred EEEEEEEecc
Q 021353 86 RKIMVLYKST 95 (313)
Q Consensus 86 KK~LvFY~g~ 95 (313)
|+.|+||+++
T Consensus 16 KRRlvf~~rk 25 (26)
T 2zvv_Y 16 KRRLIFSXXX 25 (26)
T ss_pred hceEEEEecc
Confidence 4566666654
No 5
>1zld_A PTR TOXA, PTR necrosis toxin; beta-sandwich, RGD-motif; 1.65A {Pyrenophora tritici-repentis} PDB: 1zle_A
Probab=8.36 E-value=5.4e+02 Score=20.01 Aligned_cols=51 Identities=24% Similarity=0.324 Sum_probs=33.4
Q ss_pred cCCcccccccCCCCCCCCCceEeecCCcceEEe--C-CeeeEEEEEEEEEeccCCCCCCCCCCeEEE
Q 021353 46 TGQRKRRKIQSEHSLNEEHVRWHKTGKTKPVIE--N-GIQKGCRKIMVLYKSTKKGTKPDKSNWVMH 109 (313)
Q Consensus 46 ~G~R~~R~t~~G~~~~~~~G~Wk~tGk~k~I~~--~-g~~VG~KK~LvFY~g~~~g~kg~KT~WvMH 109 (313)
+-+|.+|-+-. .|..|-....|+. + =.+|--|-.|.+-.++. ..+.+|.|.
T Consensus 62 ntgrtnrliit---------qwdntvtrgdvyelfgdyaliqgrgsfclnirsd----tgrenwrmq 115 (118)
T 1zld_A 62 NTGRTNRLIIT---------QWDNTVTRGDVYELFGDYALIQGRGSFCLNIRSD----TGRENWRMQ 115 (118)
T ss_dssp ECSSCEEEEEE---------EEEECSSSCEEEEEEEEEEECSEEEEEEEECCTT----CSCCCEEEE
T ss_pred eCCccceEEEE---------eecCceeeccHHhhhcceeEEeccceEEEEeecc----cchhhhhhc
Confidence 44567777765 6888766666664 2 24555566777766652 347899996
No 6
>3alz_B CDW150; viral protein-receptor complex, six-bladed beta-propeller FO immunoglobulin fold, beta-sandwich, viral protein-membrane complex; HET: NAG; 4.51A {Saguinus oedipus}
Probab=6.65 E-value=1.6e+02 Score=24.67 Aligned_cols=25 Identities=20% Similarity=0.090 Sum_probs=13.0
Q ss_pred CCCCCCCCCCC----CCCCCCCeEEEeee
Q 021353 15 GICYTHPENLP----GAKKDGSSVHFFHR 39 (313)
Q Consensus 15 dIy~~~PwdLP----g~~~~G~~wYFFs~ 39 (313)
|=|.+||.+|. +.++.++-|||-+-
T Consensus 94 dgY~F~leNlSL~IlesrkedEGwYfmtl 122 (149)
T 3alz_B 94 DRYRFYLENLSLAIRESTKKDEGWYFMTL 122 (149)
T ss_dssp SSEEEETTTTEEEETTCCGGGCEEEEEEE
T ss_pred cccEEeeccceeehhhcccccCceEEEEE
Confidence 34666666663 22233345666654
No 7
>1m5a_B Insulin B chain; alpha helices, beta sheets, 3(10) helices, disulphide bridge hormone-growth factor complex; 1.20A {Sus scrofa} SCOP: g.1.1.1 PDB: 1aph_B 1b18_B 1b19_B 1b2a_B 1b2b_B 1b2c_B 1b2d_B 1b2e_B 1b2f_B 1b2g_B 1bph_B 1cph_B 1dph_B 1b17_B 1mpj_B 1wav_B 1zni_B 2a3g_B 2bn1_B 2bn3_B ...
Probab=4.66 E-value=1.9e+02 Score=18.23 Aligned_cols=10 Identities=20% Similarity=0.474 Sum_probs=7.5
Q ss_pred CCeEEEeeec
Q 021353 31 GSSVHFFHRT 40 (313)
Q Consensus 31 G~~wYFFs~~ 40 (313)
|...|||+|+
T Consensus 20 gdRGF~~~p~ 29 (30)
T 1m5a_B 20 GERGFFYTPK 29 (30)
T ss_dssp GGGCEEECCC
T ss_pred ccCccccCCC
Confidence 4678999874
No 8
>3bf4_A Ethyl TERT-butyl ether degradation ETHD protein; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 2.10A {Ralstonia eutropha JMP134}
Probab=3.91 E-value=4e+02 Score=21.35 Aligned_cols=22 Identities=18% Similarity=0.307 Sum_probs=16.7
Q ss_pred CCCCCcc-ccceee-chhhHhhhh
Q 021353 289 DTPPDSH-LADLQF-SDESILGWL 310 (313)
Q Consensus 289 dTppdf~-Ls~~~f-sq~s~~~~~ 310 (313)
++||.|. ++-|.| |.+.|.+-|
T Consensus 71 g~~~~yd~iael~FdS~eal~aA~ 94 (127)
T 3bf4_A 71 GAPPAFVAMCAFICDSAENFYAAM 94 (127)
T ss_dssp TCCCSEEEEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEEEEEECCHHHHHHHh
Confidence 5667776 788888 888887654
No 9
>1ews_A RK-1 defensin, alpha-defisin; alpha defensin, triple-stranded beta-sheet, antimicrobial protein; NMR {Oryctolagus cuniculus} SCOP: g.9.1.1
Probab=3.68 E-value=2.3e+02 Score=17.59 Aligned_cols=9 Identities=22% Similarity=0.416 Sum_probs=6.8
Q ss_pred CCCCCCCCC
Q 021353 18 YTHPENLPG 26 (313)
Q Consensus 18 ~~~PwdLPg 26 (313)
+++||+...
T Consensus 8 ycdpwevid 16 (32)
T 1ews_A 8 YCDPWEVID 16 (32)
T ss_dssp SCCTTEEEE
T ss_pred ccChhheec
Confidence 689998843
No 10
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=3.41 E-value=4.5e+02 Score=19.62 Aligned_cols=18 Identities=28% Similarity=0.494 Sum_probs=12.8
Q ss_pred cccceee-chhhHhhhhhc
Q 021353 295 HLADLQF-SDESILGWLDR 312 (313)
Q Consensus 295 ~Ls~~~f-sq~s~~~~~~~ 312 (313)
++-=++| |-+.+.+|.++
T Consensus 54 ~~viieFps~~aa~a~y~S 72 (94)
T 3lo3_A 54 AQVILEFPSREDAYNWYHS 72 (94)
T ss_dssp EEEEEEESSHHHHHHHHHS
T ss_pred eEEEEECCCHHHHHHHHCC
Confidence 4556788 88888888653
Done!