Query 021354
Match_columns 313
No_of_seqs 105 out of 1091
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 09:35:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021354.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021354hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 1.9E-37 4.2E-42 291.2 28.0 298 9-312 11-311 (358)
2 PRK11272 putative DMT superfam 100.0 1.3E-31 2.7E-36 246.4 28.1 261 8-311 5-267 (292)
3 PRK11453 O-acetylserine/cystei 100.0 2.2E-30 4.8E-35 238.9 26.6 257 13-311 6-269 (299)
4 PRK11689 aromatic amino acid e 100.0 2.8E-30 6E-35 237.8 23.9 262 10-311 3-269 (295)
5 PRK15430 putative chlorampheni 100.0 7.8E-30 1.7E-34 234.9 24.8 262 5-312 2-268 (296)
6 TIGR00950 2A78 Carboxylate/Ami 100.0 1.7E-29 3.7E-34 227.7 25.4 244 23-311 1-246 (260)
7 PRK10532 threonine and homoser 100.0 1.7E-28 3.6E-33 225.7 26.5 258 4-311 6-263 (293)
8 TIGR00688 rarD rarD protein. T 100.0 2.5E-27 5.5E-32 213.7 25.1 249 11-304 2-255 (256)
9 TIGR03340 phn_DUF6 phosphonate 99.9 2.8E-25 6E-30 203.1 23.7 260 13-311 3-265 (281)
10 TIGR00817 tpt Tpt phosphate/ph 99.9 1.2E-24 2.6E-29 200.9 24.4 248 28-312 19-276 (302)
11 PTZ00343 triose or hexose phos 99.9 2.1E-22 4.6E-27 189.6 25.9 250 24-311 62-330 (350)
12 COG0697 RhaT Permeases of the 99.9 5.6E-21 1.2E-25 173.6 26.9 262 8-311 4-269 (292)
13 PF06027 DUF914: Eukaryotic pr 99.9 4E-20 8.7E-25 171.2 27.7 279 5-311 4-287 (334)
14 COG2962 RarD Predicted permeas 99.8 4.5E-18 9.7E-23 151.3 23.8 261 9-312 5-266 (293)
15 TIGR00776 RhaT RhaT L-rhamnose 99.8 8.3E-18 1.8E-22 154.5 21.5 255 13-311 3-266 (290)
16 COG5006 rhtA Threonine/homoser 99.8 1.5E-17 3.3E-22 144.5 21.6 253 12-312 13-265 (292)
17 KOG4510 Permease of the drug/m 99.7 4.7E-17 1E-21 142.4 4.4 271 10-312 37-308 (346)
18 PF00892 EamA: EamA-like trans 99.5 9E-14 2E-18 110.5 9.7 124 21-154 1-125 (126)
19 KOG2765 Predicted membrane pro 99.5 2.6E-13 5.7E-18 124.2 12.3 201 86-311 168-372 (416)
20 COG2510 Predicted membrane pro 99.5 4.3E-13 9.4E-18 105.3 10.9 135 12-154 4-138 (140)
21 PF08449 UAA: UAA transporter 99.4 7.6E-11 1.7E-15 109.0 24.4 257 26-311 15-279 (303)
22 PF04142 Nuc_sug_transp: Nucle 99.2 2.9E-09 6.2E-14 95.4 19.8 221 73-311 13-235 (244)
23 PF13536 EmrE: Multidrug resis 99.2 5.7E-11 1.2E-15 93.9 7.7 104 44-155 1-106 (113)
24 TIGR00950 2A78 Carboxylate/Ami 99.2 5.8E-10 1.3E-14 100.3 15.1 132 8-150 125-259 (260)
25 PF00892 EamA: EamA-like trans 99.1 2.3E-10 4.9E-15 90.7 6.9 108 200-311 1-108 (126)
26 KOG2766 Predicted membrane pro 99.1 1.1E-10 2.4E-15 102.0 4.3 256 15-311 23-281 (336)
27 KOG1441 Glucose-6-phosphate/ph 99.0 1.7E-09 3.6E-14 99.6 9.2 246 29-311 35-289 (316)
28 KOG1444 Nucleotide-sugar trans 98.9 6.4E-07 1.4E-11 81.4 22.3 261 13-312 14-283 (314)
29 COG2510 Predicted membrane pro 98.9 3.6E-08 7.8E-13 77.8 12.2 118 192-312 5-122 (140)
30 PRK10532 threonine and homoser 98.9 1E-07 2.2E-12 87.7 15.9 134 10-155 147-281 (293)
31 PRK11272 putative DMT superfam 98.9 9.1E-08 2E-12 88.0 15.4 137 9-155 148-285 (292)
32 KOG2234 Predicted UDP-galactos 98.8 6.1E-06 1.3E-10 76.1 25.6 277 11-311 15-304 (345)
33 PLN00411 nodulin MtN21 family 98.7 3.7E-07 8E-12 86.3 15.7 138 12-158 190-331 (358)
34 PRK11689 aromatic amino acid e 98.7 2.6E-07 5.7E-12 85.1 14.1 132 11-155 156-287 (295)
35 KOG1443 Predicted integral mem 98.7 2.7E-06 5.8E-11 76.7 18.2 270 3-310 7-296 (349)
36 TIGR03340 phn_DUF6 phosphonate 98.6 4E-07 8.7E-12 83.2 12.1 133 10-152 143-280 (281)
37 PF03151 TPT: Triose-phosphate 98.6 1.7E-06 3.6E-11 71.5 13.3 133 13-152 2-150 (153)
38 TIGR00817 tpt Tpt phosphate/ph 98.5 5.5E-07 1.2E-11 83.1 10.8 140 9-155 143-293 (302)
39 PF06800 Sugar_transport: Suga 98.5 1.7E-05 3.7E-10 71.4 19.6 205 75-310 43-248 (269)
40 PRK11453 O-acetylserine/cystei 98.5 4.6E-06 9.9E-11 76.9 15.9 138 10-154 142-286 (299)
41 PRK15430 putative chlorampheni 98.5 1.2E-06 2.6E-11 80.7 10.8 121 187-311 5-127 (296)
42 KOG1580 UDP-galactose transpor 98.4 1E-05 2.2E-10 70.5 15.0 204 80-310 88-294 (337)
43 PTZ00343 triose or hexose phos 98.4 1.4E-05 3.1E-10 75.4 15.4 139 9-154 192-347 (350)
44 TIGR00688 rarD rarD protein. T 98.3 3.6E-06 7.8E-11 75.8 10.3 119 190-311 2-124 (256)
45 PF03151 TPT: Triose-phosphate 98.2 1.1E-05 2.5E-10 66.4 10.5 120 191-311 1-135 (153)
46 COG0697 RhaT Permeases of the 98.2 5.2E-05 1.1E-09 68.5 15.6 132 10-154 153-286 (292)
47 TIGR00776 RhaT RhaT L-rhamnose 98.2 2.4E-05 5.2E-10 72.0 13.4 129 10-154 151-287 (290)
48 PRK15051 4-amino-4-deoxy-L-ara 98.2 6.5E-06 1.4E-10 64.7 8.2 66 83-154 42-108 (111)
49 KOG1581 UDP-galactose transpor 98.0 0.0016 3.4E-08 59.2 19.9 240 39-311 50-295 (327)
50 PF05653 Mg_trans_NIPA: Magnes 97.9 0.00037 8E-09 64.4 14.0 117 9-155 5-122 (300)
51 PRK02971 4-amino-4-deoxy-L-ara 97.9 0.00029 6.2E-09 56.9 11.4 117 12-155 3-122 (129)
52 KOG3912 Predicted integral mem 97.8 0.0005 1.1E-08 61.7 13.2 192 23-239 15-226 (372)
53 PRK13499 rhamnose-proton sympo 97.8 0.012 2.5E-07 55.3 23.0 278 9-310 5-316 (345)
54 KOG1442 GDP-fucose transporter 97.8 0.00022 4.7E-09 63.7 10.6 240 39-310 60-308 (347)
55 KOG4314 Predicted carbohydrate 97.7 0.00012 2.5E-09 62.5 7.6 98 88-216 64-161 (290)
56 COG5070 VRG4 Nucleotide-sugar 97.7 0.00043 9.3E-09 60.1 9.8 204 81-312 72-279 (309)
57 TIGR00803 nst UDP-galactose tr 97.6 0.00061 1.3E-08 60.0 10.0 183 107-311 8-206 (222)
58 PF06027 DUF914: Eukaryotic pr 97.4 0.0029 6.4E-08 59.2 12.5 139 8-155 165-305 (334)
59 PF13536 EmrE: Multidrug resis 97.4 0.00041 8.8E-09 54.5 5.6 55 256-311 34-88 (113)
60 PRK02971 4-amino-4-deoxy-L-ara 97.3 0.0023 5.1E-08 51.6 9.0 102 190-312 2-105 (129)
61 PF08449 UAA: UAA transporter 97.1 0.0092 2E-07 55.1 13.0 138 12-155 155-297 (303)
62 COG5006 rhtA Threonine/homoser 97.1 0.009 1.9E-07 53.1 11.7 129 11-150 148-277 (292)
63 PRK10650 multidrug efflux syst 96.8 0.015 3.2E-07 45.4 9.6 60 88-153 46-106 (109)
64 PRK15051 4-amino-4-deoxy-L-ara 96.7 0.0043 9.4E-08 48.7 5.8 49 264-312 44-92 (111)
65 COG2962 RarD Predicted permeas 96.7 0.013 2.8E-07 53.1 9.2 120 189-311 6-126 (293)
66 KOG1441 Glucose-6-phosphate/ph 96.5 0.0086 1.9E-07 55.5 7.6 140 8-155 160-307 (316)
67 COG2076 EmrE Membrane transpor 96.5 0.0087 1.9E-07 46.2 6.3 61 88-154 41-102 (106)
68 PRK10452 multidrug efflux syst 96.5 0.0099 2.1E-07 47.3 6.8 62 88-155 41-103 (120)
69 PRK09541 emrE multidrug efflux 96.4 0.017 3.8E-07 45.2 7.3 62 88-155 41-103 (110)
70 COG4975 GlcU Putative glucose 96.3 0.0013 2.9E-08 58.0 0.7 258 13-310 4-262 (288)
71 PRK11431 multidrug efflux syst 96.3 0.021 4.5E-07 44.3 7.1 61 88-154 40-101 (105)
72 PRK13499 rhamnose-proton sympo 96.2 0.2 4.3E-06 47.2 14.6 149 7-155 170-341 (345)
73 PF06800 Sugar_transport: Suga 96.1 0.1 2.2E-06 47.4 11.8 116 8-132 135-250 (269)
74 PF00893 Multi_Drug_Res: Small 96.1 0.016 3.5E-07 43.9 5.6 52 88-145 40-92 (93)
75 KOG2922 Uncharacterized conser 95.9 0.045 9.9E-07 50.3 8.8 119 7-155 17-136 (335)
76 PF10639 UPF0546: Uncharacteri 95.8 0.029 6.3E-07 44.0 5.9 108 17-152 2-111 (113)
77 KOG4510 Permease of the drug/m 95.2 0.012 2.7E-07 52.6 2.5 133 13-155 193-325 (346)
78 PF04657 DUF606: Protein of un 95.2 0.39 8.4E-06 39.2 11.1 104 39-151 29-137 (138)
79 KOG1583 UDP-N-acetylglucosamin 94.0 1.6 3.4E-05 39.6 12.7 248 41-311 34-296 (330)
80 KOG1582 UDP-galactose transpor 93.9 2.1 4.6E-05 38.8 13.3 253 19-311 51-314 (367)
81 TIGR00803 nst UDP-galactose tr 93.0 0.55 1.2E-05 41.1 8.2 62 84-151 159-220 (222)
82 KOG1580 UDP-galactose transpor 92.6 0.33 7.2E-06 42.9 6.1 72 77-154 241-312 (337)
83 PF05653 Mg_trans_NIPA: Magnes 92.2 0.48 1E-05 43.8 7.1 100 187-311 4-104 (300)
84 PF00893 Multi_Drug_Res: Small 91.0 0.82 1.8E-05 34.5 6.0 47 266-312 38-85 (93)
85 PF04657 DUF606: Protein of un 90.6 3 6.4E-05 33.9 9.4 108 192-303 3-111 (138)
86 COG3238 Uncharacterized protei 90.5 4.8 0.0001 33.2 10.5 134 13-152 7-143 (150)
87 KOG1444 Nucleotide-sugar trans 89.9 3 6.4E-05 38.6 9.7 139 11-155 157-300 (314)
88 KOG2765 Predicted membrane pro 88.1 5.5 0.00012 37.7 10.2 137 10-155 246-390 (416)
89 KOG1443 Predicted integral mem 84.7 18 0.00038 33.5 11.3 135 11-152 164-312 (349)
90 COG3238 Uncharacterized protei 84.4 10 0.00022 31.4 8.9 112 189-303 4-116 (150)
91 PF07857 DUF1632: CEO family ( 79.0 40 0.00087 30.4 11.6 134 13-158 2-137 (254)
92 COG5070 VRG4 Nucleotide-sugar 77.2 11 0.00024 33.3 7.1 112 37-155 182-296 (309)
93 PRK10452 multidrug efflux syst 76.7 3.9 8.4E-05 32.5 3.9 47 266-312 39-86 (120)
94 KOG1581 UDP-galactose transpor 76.4 37 0.00081 31.4 10.5 137 9-154 170-312 (327)
95 PRK09541 emrE multidrug efflux 73.8 5.1 0.00011 31.3 3.9 43 269-311 42-85 (110)
96 KOG1582 UDP-galactose transpor 70.8 19 0.00041 32.8 7.2 111 38-155 218-332 (367)
97 PRK10650 multidrug efflux syst 70.2 20 0.00043 27.9 6.4 45 268-312 46-91 (109)
98 COG2076 EmrE Membrane transpor 66.1 8.8 0.00019 29.7 3.6 43 269-311 42-85 (106)
99 KOG2922 Uncharacterized conser 64.2 6.5 0.00014 36.5 3.0 103 185-311 16-118 (335)
100 PRK11431 multidrug efflux syst 63.2 12 0.00025 29.0 3.9 45 268-312 40-85 (105)
101 PF04142 Nuc_sug_transp: Nucle 59.6 1.3E+02 0.0028 26.8 12.1 123 9-132 112-236 (244)
102 COG4975 GlcU Putative glucose 59.1 7.6 0.00017 34.8 2.4 132 12-154 153-284 (288)
103 KOG3912 Predicted integral mem 58.1 1.5E+02 0.0033 27.4 10.4 139 8-152 173-331 (372)
104 COG4657 RnfA Predicted NADH:ub 51.0 71 0.0015 26.8 6.6 85 125-236 87-183 (193)
105 KOG1583 UDP-N-acetylglucosamin 50.1 15 0.00033 33.5 2.9 137 12-155 165-314 (330)
106 KOG4831 Unnamed protein [Funct 47.0 1.4E+02 0.0029 23.3 9.6 112 13-153 5-123 (125)
107 COG3086 RseC Positive regulato 41.5 40 0.00087 27.6 3.8 29 96-124 67-95 (150)
108 PRK02237 hypothetical protein; 37.3 42 0.00091 26.0 3.1 33 117-155 73-105 (109)
109 PF02694 UPF0060: Uncharacteri 35.9 37 0.00081 26.2 2.7 34 116-155 70-103 (107)
110 PF04342 DUF486: Protein of un 34.9 31 0.00066 26.7 2.0 28 118-151 77-104 (108)
111 KOG4314 Predicted carbohydrate 33.7 31 0.00066 30.0 2.1 41 270-310 66-106 (290)
112 COG3169 Uncharacterized protei 32.0 66 0.0014 24.5 3.4 31 118-154 84-114 (116)
113 KOG2766 Predicted membrane pro 27.3 2.3E+02 0.005 25.8 6.5 130 12-153 167-297 (336)
114 PRK10862 SoxR reducing system 26.5 78 0.0017 26.1 3.3 29 97-125 68-96 (154)
115 PF10639 UPF0546: Uncharacteri 25.8 1.7E+02 0.0038 22.9 4.9 43 268-310 52-95 (113)
116 PRK15462 dipeptide/tripeptide 21.9 7.3E+02 0.016 24.6 9.7 49 106-154 310-361 (493)
117 TIGR01647 ATPase-IIIA_H plasma 21.5 9.6E+02 0.021 25.2 12.9 29 124-152 723-751 (755)
118 PF04246 RseC_MucC: Positive r 21.3 97 0.0021 24.7 2.9 25 101-125 65-89 (135)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=1.9e-37 Score=291.22 Aligned_cols=298 Identities=46% Similarity=0.791 Sum_probs=230.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHHHH
Q 021354 9 EALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGV 88 (313)
Q Consensus 9 ~~~~~l~l~~~~~~~g~~~~~~K~~l~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 88 (313)
+.++++.++.+++.+++..++.|.+++.+++|+.++++|+.+|+++++++.+.+ +|++++++.+++++.++.+.|+++.
T Consensus 11 ~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~-~~~~~~~~~~~~~~~~l~l~g~~g~ 89 (358)
T PLN00411 11 EAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFT-NRSRSLPPLSVSILSKIGLLGFLGS 89 (358)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHH-HHhcccCcchHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999987665 3322213445778888989999886
Q ss_pred HHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhhhcCCccccCCCCC
Q 021354 89 LSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPS 168 (313)
Q Consensus 89 ~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~~~g~~~~~~~~~~ 168 (313)
.++.+++.|++|+++++++++.+++|+++.+++++++.|+++.++|.++.+++|++++++|+.++...+++......+++
T Consensus 90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~ 169 (358)
T PLN00411 90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPP 169 (358)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence 67789999999999999999999999999999999954444444444444999999999999987764443210000000
Q ss_pred --CCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhhcCCC-C
Q 021354 169 --STHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEPD-L 245 (313)
Q Consensus 169 --~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-~ 245 (313)
+......+. .....++..|+++++++++|||+|++++|+..++++++...++|++.++++.+.+.+...+++ .
T Consensus 170 ~~~~~~~~~~~----~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~ 245 (358)
T PLN00411 170 YLNFRQLSPPL----SSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNP 245 (358)
T ss_pred ccccccccccc----CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 000000000 011234567999999999999999999999988887666788899998888887777665532 2
Q ss_pred ccccccChhhHHHHHHHHhhhhHHHHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCccccC
Q 021354 246 SLWRLKPDVALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHLG 312 (313)
Q Consensus 246 ~~~~~~~~~~~~~ll~lgv~~s~~~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~~~ 312 (313)
..|...++.....++|.++. +.++|.+|++++++.||+++|.+.+++|++++++|++++||++++.
T Consensus 246 ~~~~~~~~~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~ 311 (358)
T PLN00411 246 SVWIIHFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG 311 (358)
T ss_pred ccceeccchHHHHHHHHHHH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH
Confidence 23322222334567888875 6789999999999999999999999999999999999999999874
No 2
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=100.00 E-value=1.3e-31 Score=246.36 Aligned_cols=261 Identities=14% Similarity=0.135 Sum_probs=215.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHHH
Q 021354 8 REALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG 87 (313)
Q Consensus 8 ~~~~~~l~l~~~~~~~g~~~~~~K~~l~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 87 (313)
+-..-++.+++..++||++++++|...+ ++||.+++++|+.+++++++++...+ +++ . .+++++......|.++
T Consensus 5 ~~~~~~~~~~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~-~~~-~---~~~~~~~~~~~~g~~~ 78 (292)
T PRK11272 5 QLLPLFGALFALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLLR-GHP-L---PTLRQWLNAALIGLLL 78 (292)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHh-CCC-C---CcHHHHHHHHHHHHHH
Confidence 3445567888899999999999999876 69999999999999999998886554 222 1 2456777788888887
Q ss_pred -HHHHHHHHHHh-hccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhhhcCCccccCC
Q 021354 88 -VLSQIFGYTGI-ACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGT 165 (313)
Q Consensus 88 -~~~~~~~~~gl-~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~~~g~~~~~~~ 165 (313)
..++.+++.+. +++++++++++.++.|+++.+++++ +|||++++ +++|++++++|+.++... + +
T Consensus 79 ~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~~~-~-~----- 144 (292)
T PRK11272 79 LAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLNSG-G-N----- 144 (292)
T ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHhcC-c-c-----
Confidence 67888899999 9999999999999999999999985 69999999 999999999999876531 1 0
Q ss_pred CCCCCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 021354 166 SPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEPDL 245 (313)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~ 245 (313)
.+ ....|+++.+++++|||.|++..|+..++. +...+.+++.+++..+.+.....+.+.
T Consensus 145 ------------------~~-~~~~G~l~~l~a~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (292)
T PRK11272 145 ------------------LS-GNPWGAILILIASASWAFGSVWSSRLPLPV--GMMAGAAEMLAAGVVLLIASLLSGERL 203 (292)
T ss_pred ------------------cc-cchHHHHHHHHHHHHHHHHHHHHHhcCCCc--chHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 01 124799999999999999999999865432 356778899999888888776544322
Q ss_pred ccccccChhhHHHHHHHHhhhhHHHHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCcccc
Q 021354 246 SLWRLKPDVALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 311 (313)
Q Consensus 246 ~~~~~~~~~~~~~ll~lgv~~s~~~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~~ 311 (313)
.. .++...|..++|++++++.++|.+|++++|+.++++++.+.+++|+++++++++++||+++.
T Consensus 204 ~~--~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~ 267 (292)
T PRK11272 204 TA--LPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSP 267 (292)
T ss_pred cc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcH
Confidence 11 11235688999999999999999999999999999999999999999999999999999985
No 3
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.98 E-value=2.2e-30 Score=238.88 Aligned_cols=257 Identities=14% Similarity=0.105 Sum_probs=199.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHHH-HHHH
Q 021354 13 LSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-VLSQ 91 (313)
Q Consensus 13 ~l~l~~~~~~~g~~~~~~K~~l~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~ 91 (313)
.+..++++++||++++++|.+++ ++||.++.++|+.++++.+.++.. + ++. +++ .....|+.. ...+
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~~~l~~~~~-~--~~~-----~~~---~~~~~g~~~~~~~~ 73 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLH-NMPPLMLAGLRFMLVAFPAIFFVA-R--PKV-----PLN---LLLGYGLTISFGQF 73 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHhc-C--CCC-----chH---HHHHHHHHHHHHHH
Confidence 45678899999999999999887 599999999999998877766532 1 111 122 233445555 4566
Q ss_pred HHHHHHhhcc-CchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhhhcCCccccCCCCCCC
Q 021354 92 IFGYTGIACS-SPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSST 170 (313)
Q Consensus 92 ~~~~~gl~~t-~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~~~g~~~~~~~~~~~~ 170 (313)
.+++.+++|+ ++++++++.++.|+++.+++++++|||++++ +++|++++++|+.++.. + +.
T Consensus 74 ~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~~--~-~~--------- 135 (299)
T PRK11453 74 AFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLIE--D-SL--------- 135 (299)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhcc--c-cC---------
Confidence 6788999985 7899999999999999999999999999999 99999999999987763 1 00
Q ss_pred CCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcChh--HHHHHHHHHHHHHHHHHHHhhcCCCC---
Q 021354 171 HSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLTQIINIYPAE--LLVAFLYNLFAAVIAVPLCLFAEPDL--- 245 (313)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~--~~~t~~~~l~~~~~~~~~~~~~~~~~--- 245 (313)
. .......|+++++.++++|++|++.+|+..++.+++ ...+.++++.+.+.....+...+++.
T Consensus 136 -----------~-~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (299)
T PRK11453 136 -----------N-GQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMI 203 (299)
T ss_pred -----------C-CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhh
Confidence 0 011124799999999999999999999976554322 34456666666665555444444321
Q ss_pred ccccccChhhHHHHHHHHhhhhHHHHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCcccc
Q 021354 246 SLWRLKPDVALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 311 (313)
Q Consensus 246 ~~~~~~~~~~~~~ll~lgv~~s~~~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~~ 311 (313)
.++...+...|..++|+|+++++++|.+|++++++.++++++.+.+++|+++++++++++||++++
T Consensus 204 ~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~ 269 (299)
T PRK11453 204 HSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTG 269 (299)
T ss_pred hhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccH
Confidence 111122335688999999999999999999999999999999999999999999999999999986
No 4
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.97 E-value=2.8e-30 Score=237.77 Aligned_cols=262 Identities=15% Similarity=0.102 Sum_probs=193.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHHH-H
Q 021354 10 ALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-V 88 (313)
Q Consensus 10 ~~~~l~l~~~~~~~g~~~~~~K~~l~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~ 88 (313)
.+.++.++++.++||++++..|.+++ ++||..++++|+.++++++.++.. + ++. ++.+++ ....+.++ .
T Consensus 3 ~~~~l~~l~a~~~Wg~~~~~~k~~~~-~~~P~~~~~~R~~~a~l~l~~~~~-~--~~~--~~~~~~----~~~~~~l~~~ 72 (295)
T PRK11689 3 QKATLIGLIAILLWSTMVGLIRGVSE-SLGPVGGAAMIYSVSGLLLLLTVG-F--PRL--RQFPKR----YLLAGGLLFV 72 (295)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHc-cCChHHHHHHHHHHHHHHHHHHcc-c--ccc--ccccHH----HHHHHhHHHH
Confidence 45688899999999999999999876 599999999999999998887632 1 111 111222 22344444 6
Q ss_pred HHHHHHHHHhhc----cCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhhhcCCccccC
Q 021354 89 LSQIFGYTGIAC----SSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLG 164 (313)
Q Consensus 89 ~~~~~~~~gl~~----t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~~~g~~~~~~ 164 (313)
.++.+++.|++| +++++++++.+++|+++.+++++++|||++++ +++|++++++|+.++.. .+.+.+.
T Consensus 73 ~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~-~~~~~~~- 144 (295)
T PRK11689 73 SYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLG-GDNGLSL- 144 (295)
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheec-CCccchh-
Confidence 777888888865 47788899999999999999999999999999 99999999999987763 1110000
Q ss_pred CCCCCCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 021354 165 TSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEPD 244 (313)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~ 244 (313)
+ + . .....+...|+++++.+++|||.|++..||..++.+ +... . ...+++.+.+.....+ +
T Consensus 145 -~--~------~-----~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~-~~~~--~-~~~~~~~l~~~~~~~~-~ 205 (295)
T PRK11689 145 -A--E------L-----INNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKN-GITL--F-FILTALALWIKYFLSP-Q 205 (295)
T ss_pred -h--h------h-----hhccccChHHHHHHHHHHHHHHHHHHHHhhccCCCC-chhH--H-HHHHHHHHHHHHHHhc-C
Confidence 0 0 0 000012246999999999999999999999876653 4433 2 2333333333333322 2
Q ss_pred CccccccChhhHHHHHHHHhhhhHHHHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCcccc
Q 021354 245 LSLWRLKPDVALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 311 (313)
Q Consensus 245 ~~~~~~~~~~~~~~ll~lgv~~s~~~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~~ 311 (313)
+ ..+. +...|..++|.++ +++++|.+|++++|+.++++++.+.+++|++++++|++++||+++.
T Consensus 206 ~-~~~~-~~~~~~~l~~~~~-~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~ 269 (295)
T PRK11689 206 P-AMVF-SLPAIIKLLLAAA-AMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSF 269 (295)
T ss_pred c-cccC-CHHHHHHHHHHHH-HHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcH
Confidence 1 1122 2346777788885 8999999999999999999999999999999999999999999985
No 5
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.97 E-value=7.8e-30 Score=234.90 Aligned_cols=262 Identities=11% Similarity=0.038 Sum_probs=195.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCcc-CCCc-cHHHHHHHHH
Q 021354 5 KFFREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTV-VPSF-KFSILSRIIL 82 (313)
Q Consensus 5 ~~~~~~~~~l~l~~~~~~~g~~~~~~K~~l~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~-~~~~-~~~~~~~~~~ 82 (313)
||+++.++++.+++++++||.+++++|.. + ++||.+++++|+.++.+++.++...+ +++.. .++. +++++.. ..
T Consensus 2 ~~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-~~ 77 (296)
T PRK15430 2 DAKQTRQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSIC-RQWSYLKTLIQTPQKIFM-LA 77 (296)
T ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHH-ccHHHHHHHHcCHHHHHH-HH
Confidence 56788899999999999999999999985 4 59999999999999998887776544 21110 0011 2333322 33
Q ss_pred HHHHH-HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhhhcCCcc
Q 021354 83 LSFIG-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTI 161 (313)
Q Consensus 83 ~g~~~-~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~~~g~~~ 161 (313)
.+.++ ..++.++++|++++|+++++++.++.|+++.+++++++|||++++ +|.|++++++|+.++... .
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~~-~--- 147 (296)
T PRK15430 78 VSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLWT-F--- 147 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHHH-c---
Confidence 55555 778999999999999999999999999999999999999999999 999999999999887631 0
Q ss_pred ccCCCCCCCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhc-ChhHHHHHHHHHHHHHHHHHHHhh
Q 021354 162 FLGTSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLTQIINIY-PAELLVAFLYNLFAAVIAVPLCLF 240 (313)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~-~~~~~~t~~~~l~~~~~~~~~~~~ 240 (313)
+.. ..+.++++++||.|++..|+..++. .+....+.+++.++.....+..
T Consensus 148 -----------------------~~~----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 198 (296)
T PRK15430 148 -----------------------GSL----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA-- 198 (296)
T ss_pred -----------------------CCc----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc--
Confidence 111 1468889999999999998864322 1223445556655554433221
Q ss_pred cCCCCccccccChhhHHH-HHHHHhhhhHHHHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCccccC
Q 021354 241 AEPDLSLWRLKPDVALVS-IVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHLG 312 (313)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~-ll~lgv~~s~~~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~~~ 312 (313)
+++...+..++ ..+.. +++.|+ .+.++|.+|++++++.+++++|++.+++|++++++|++++||++++.
T Consensus 199 -~~~~~~~~~~~-~~~~~~~~~~g~-~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~ 268 (296)
T PRK15430 199 -DSSTSHMGQNP-MSLNLLLIAAGI-VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGAD 268 (296)
T ss_pred -cCCcccccCCc-HHHHHHHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 11111122111 22233 334454 78899999999999999999999999999999999999999999863
No 6
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.97 E-value=1.7e-29 Score=227.68 Aligned_cols=244 Identities=18% Similarity=0.260 Sum_probs=203.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHHH-HHHHHHHHHHhhcc
Q 021354 23 TVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-VLSQIFGYTGIACS 101 (313)
Q Consensus 23 ~g~~~~~~K~~l~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~gl~~t 101 (313)
||.+++..|..++++.||.+..+.|+..+.+++.+.... + + +++++.+....|.++ ..++.++++|++|+
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~---~--~----~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~ 71 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR---R--P----PLKRLLRLLLLGALQIGVFYVLYFVAVKRL 71 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh---c--c----CHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999998877999999999999998888776432 1 1 234455677888877 78999999999999
Q ss_pred CchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhhhcCCccccCCCCCCCCCCCccccccC
Q 021354 102 SPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMG 181 (313)
Q Consensus 102 ~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 181 (313)
++++++++.++.|+++.+++++++|||++++ +++|++++++|+.++.. ++
T Consensus 72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~~-~~----------------------- 121 (260)
T TIGR00950 72 PVGEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLLS-DG----------------------- 121 (260)
T ss_pred ChhhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhcc-CC-----------------------
Confidence 9999999999999999999999999999999 99999999999987653 11
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCh-hHHHHHHHHHHHHHHHHHHHhhcCCCCccccccChhhHHHHH
Q 021354 182 SPSVSNWVTGGFLLAAQCFLLSIWSILLTQIINIYPA-ELLVAFLYNLFAAVIAVPLCLFAEPDLSLWRLKPDVALVSIV 260 (313)
Q Consensus 182 ~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~-~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 260 (313)
.+.....|+.+++.++++|+.+.+..|+..++.+. +...+.+++.++.+.+.+.....+++. . . +...+..++
T Consensus 122 --~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~--~-~~~~~~~~~ 195 (260)
T TIGR00950 122 --NLSINPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-Q--A-LSLQWGALL 195 (260)
T ss_pred --cccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-C--c-chHHHHHHH
Confidence 01223589999999999999999999998766542 245555788899888888876544322 1 1 234677789
Q ss_pred HHHhhhhHHHHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCcccc
Q 021354 261 YSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 311 (313)
Q Consensus 261 ~lgv~~s~~~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~~ 311 (313)
+.+++++.++|.+|++++|+.++++++.+.+++|+++++++++++||+++.
T Consensus 196 ~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~ 246 (260)
T TIGR00950 196 YLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSL 246 (260)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 999999999999999999999999999999999999999999999999985
No 7
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.97 E-value=1.7e-28 Score=225.74 Aligned_cols=258 Identities=17% Similarity=0.126 Sum_probs=203.5
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHH
Q 021354 4 RKFFREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILL 83 (313)
Q Consensus 4 ~~~~~~~~~~l~l~~~~~~~g~~~~~~K~~l~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (313)
|| ..+.+++..++++++.|+.++.++|.+.++ +||.+++++|+.+++++++++...+ + . +.+++++......
T Consensus 6 ~~-~~~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~~~--~-~---~~~~~~~~~~~~~ 77 (293)
T PRK10532 6 RK-LPVWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFKPW--R-L---RFAKEQRLPLLFY 77 (293)
T ss_pred cc-cccchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHhHH--h-c---cCCHHHHHHHHHH
Confidence 44 455888999999999999999999999875 9999999999999999888765322 1 1 2345667777788
Q ss_pred HHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhhhcCCcccc
Q 021354 84 SFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFL 163 (313)
Q Consensus 84 g~~~~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~~~g~~~~~ 163 (313)
|+.....+.+++++++|+|++.++++.++.|+++.+++ +||. + ++.+++++++|+.++.. .+.+
T Consensus 78 g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~--~------~~~~~~i~~~Gv~li~~-~~~~--- 141 (293)
T PRK10532 78 GVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRP--V------DFVWVVLAVLGLWFLLP-LGQD--- 141 (293)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCCh--H------HHHHHHHHHHHHheeee-cCCC---
Confidence 88777778889999999999999999999999998876 2433 2 34567788999887652 1110
Q ss_pred CCCCCCCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhhcCC
Q 021354 164 GTSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEP 243 (313)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~ 243 (313)
.+.....|+++.++++++||.|++..|+..++.+ +... .++.+++++.+.+.....++
T Consensus 142 --------------------~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~~ 199 (293)
T PRK10532 142 --------------------VSHVDLTGAALALGAGACWAIYILSGQRAGAEHG-PATV-AIGSLIAALIFVPIGALQAG 199 (293)
T ss_pred --------------------cccCChHHHHHHHHHHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHHHHHHHccC
Confidence 0112257999999999999999999999876664 4555 56677788777777655432
Q ss_pred CCccccccChhhHHHHHHHHhhhhHHHHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCcccc
Q 021354 244 DLSLWRLKPDVALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 311 (313)
Q Consensus 244 ~~~~~~~~~~~~~~~ll~lgv~~s~~~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~~ 311 (313)
...+ +...+..++|+|+++|.++|.+|+++++|.+++++|.+.++||++++++|++++||+++.
T Consensus 200 -~~~~---~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~ 263 (293)
T PRK10532 200 -EALW---HWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTL 263 (293)
T ss_pred -cccC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcH
Confidence 1111 123455678999999999999999999999999999999999999999999999999985
No 8
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.96 E-value=2.5e-27 Score=213.66 Aligned_cols=249 Identities=9% Similarity=0.025 Sum_probs=182.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCc----cCCCccHH-HHHHHHHHHH
Q 021354 11 LLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTT----VVPSFKFS-ILSRIILLSF 85 (313)
Q Consensus 11 ~~~l~l~~~~~~~g~~~~~~K~~l~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~g~ 85 (313)
|++++++++.++||.+++++|. ++ ++||.+++++|+.++++++.++...+ ++++ +.++.+++ ++..+...|+
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~-~~~~~~i~~~R~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~ 78 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LK-PLPATDILGHRMIWSFPFMLLSVTLF-RQWAALIERLKRIQKRPLILSLLLCGL 78 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hc-cCCHHHHHHHHHHHHHHHHHHHHHHH-cchHHHHHHHhCcccchHHHHHHHHHH
Confidence 4688999999999999999998 45 59999999999999998887765443 2211 10111222 2444666777
Q ss_pred HHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhhhcCCccccCC
Q 021354 86 IGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGT 165 (313)
Q Consensus 86 ~~~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~~~g~~~~~~~ 165 (313)
....++.++++|++|+++++++++.+++|+++.+++++++|||++++ +|+|++++++|+.++... +
T Consensus 79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~-~------- 144 (256)
T TIGR00688 79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVL-K------- 144 (256)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHH-c-------
Confidence 77889999999999999999999999999999999999999999999 999999999999876531 0
Q ss_pred CCCCCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 021354 166 SPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEPDL 245 (313)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~ 245 (313)
+.. ..+.+++++||+.|.+..|+..++. . ...... .+.......+.... ++.+
T Consensus 145 -------------------~~~----~~~~l~aa~~~a~~~i~~~~~~~~~-~-~~~~~~-~~~~~~~~~~~~~~-~~~~ 197 (256)
T TIGR00688 145 -------------------GSL----PWEALVLAFSFTAYGLIRKALKNTD-L-AGFCLE-TLSLMPVAIYYLLQ-TDFA 197 (256)
T ss_pred -------------------CCc----hHHHHHHHHHHHHHHHHHhhcCCCC-c-chHHHH-HHHHHHHHHHHHHH-hccC
Confidence 111 1357889999999999999865432 2 222111 11111111111111 1111
Q ss_pred ccccccChhhHHHHHHHHhhhhHHHHHHHHHHhhccCceeeecccchHHHHHHHHHHHH
Q 021354 246 SLWRLKPDVALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIF 304 (313)
Q Consensus 246 ~~~~~~~~~~~~~ll~lgv~~s~~~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~ 304 (313)
.....++..+|..+++.|+. +.++|.+|++++|+.++++++.+.|++|+++++++++.
T Consensus 198 ~~~~~~~~~~~~~l~~~g~~-t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 198 TVQQTNPFPIWLLLVLAGLI-TGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred cccccCchhHHHHHHHHHHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 11111122367778888875 88999999999999999999999999999999999875
No 9
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.94 E-value=2.8e-25 Score=203.14 Aligned_cols=260 Identities=16% Similarity=0.068 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHHHHHHHH
Q 021354 13 LSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQI 92 (313)
Q Consensus 13 ~l~l~~~~~~~g~~~~~~K~~l~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 92 (313)
++..+.++++|+......|...++ -++ ..++++..+++++.|+...++.++.+ +..+++.+......++.+..++.
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 78 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK-EPD--FLWWALLAHSVLLTPYGLWYLAQVGW-SRLPATFWLLLAISAVANMVYFL 78 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc-hhH--HHHHHHHHHHHHHHHHHHHhcccCCC-CCcchhhHHHHHHHHHHHHHHHH
Confidence 567788999999999999965454 344 35888888888888876543012222 22233444344444444488999
Q ss_pred HHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhhhcCCccccCCCCCCCCC
Q 021354 93 FGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHS 172 (313)
Q Consensus 93 ~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~~~g~~~~~~~~~~~~~~ 172 (313)
+++.|++++++++++.+.++.|+++.+++++++|||++++ +|+|+++++.|+.++.. ++.
T Consensus 79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~-~~~------------- 138 (281)
T TIGR03340 79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGL-SRF------------- 138 (281)
T ss_pred HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhc-ccc-------------
Confidence 9999999999999999999999999999999999999999 99999999999987663 110
Q ss_pred CCccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCh---hHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 021354 173 TNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLTQIINIYPA---ELLVAFLYNLFAAVIAVPLCLFAEPDLSLWR 249 (313)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~---~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~ 249 (313)
+.....|+.+++++++||+.|++..|+..++.++ ....+.++++.+++...+.....++. .+.
T Consensus 139 ------------~~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 204 (281)
T TIGR03340 139 ------------AQHRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGR--SMF 204 (281)
T ss_pred ------------cccchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhcc--chh
Confidence 1112367889999999999999998875443321 11233344433322222222211211 111
Q ss_pred ccChhhHHHHHHHHhhhhHHHHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCcccc
Q 021354 250 LKPDVALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 311 (313)
Q Consensus 250 ~~~~~~~~~ll~lgv~~s~~~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~~ 311 (313)
. ++..+..+++.+.+.+.++|.+|++++++.++++++.+.+++|++++++|++++||+++.
T Consensus 205 ~-~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~ 265 (281)
T TIGR03340 205 P-YARQILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYL 265 (281)
T ss_pred h-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccH
Confidence 1 223456778899999999999999999999999999999999999999999999999986
No 10
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.94 E-value=1.2e-24 Score=200.90 Aligned_cols=248 Identities=10% Similarity=0.058 Sum_probs=189.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhh
Q 021354 28 TLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSS 107 (313)
Q Consensus 28 ~~~K~~l~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~t~a~~as 107 (313)
..-|..+++--+|..++++|+.++.+.+.+... . +.+++ ++.+++++.+.+..|+++..++.+...|++|+++++++
T Consensus 19 ~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~-~-~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~ 95 (302)
T TIGR00817 19 IYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWS-S-GLPKR-LKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTH 95 (302)
T ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHH-h-CCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 357888875367999999999999877665521 1 11122 34678899999999999988889999999999999999
Q ss_pred hhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhhhcCCccccCCCCCCCCCCCccccccCCCCCCc
Q 021354 108 AISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSPSVSN 187 (313)
Q Consensus 108 ~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (313)
++.+++|+++.+++++++|||++++ ++.|++++++|+.+... + +.+.
T Consensus 96 li~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~~--~------------------------~~~~- 142 (302)
T TIGR00817 96 TIKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALASD--T------------------------ELSF- 142 (302)
T ss_pred HHHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhcC--C------------------------cccc-
Confidence 9999999999999999999999999 99999999999975321 1 0112
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh--hcChhHHHHHHHHHHHHHHHHHHHhhcCCCCc---cccc-----cChhhHH
Q 021354 188 WVTGGFLLAAQCFLLSIWSILLTQIIN--IYPAELLVAFLYNLFAAVIAVPLCLFAEPDLS---LWRL-----KPDVALV 257 (313)
Q Consensus 188 ~~~G~ll~l~aa~~~a~~~v~~k~~~~--~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~~ 257 (313)
...|++++++++++|++|++..||..+ +. ++...+.+++..+++.++|.....|+... ++.. .....+.
T Consensus 143 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (302)
T TIGR00817 143 NWAGFLSAMISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYT 221 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHH
Confidence 247999999999999999999999876 55 46899999999999999998876553211 1100 0000111
Q ss_pred HHHHHHhhhhHHHHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCccccC
Q 021354 258 SIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHLG 312 (313)
Q Consensus 258 ~ll~lgv~~s~~~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~~~ 312 (313)
..++.+..+....+.++++++++.+|++.+...+++|++++++|++++||+++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~ 276 (302)
T TIGR00817 222 VSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ 276 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh
Confidence 1222222222222245568999999999999999999999999999999999863
No 11
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.91 E-value=2.1e-22 Score=189.56 Aligned_cols=250 Identities=16% Similarity=0.137 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021354 24 VGLNTLFKAAASKGLS-YYVFVAYSYPLATLALLPLPLIFRNTTTVVPSF--KFSILSRIILLSFIGVLSQIFGYTGIAC 100 (313)
Q Consensus 24 g~~~~~~K~~l~~~~~-p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~gl~~ 100 (313)
.......|..++. +| |..+.++|+.++.++........ .++ + ++. .++++..++..|+++...+...+.|+++
T Consensus 62 ~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~~~-~~~-~-~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl~~ 137 (350)
T PTZ00343 62 VLYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWATG-FRK-I-PRIKSLKLFLKNFLPQGLCHLFVHFGAVISMGL 137 (350)
T ss_pred HHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHhC-CCC-C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334558988875 99 99999999999987655443321 111 1 223 3457788899999985445556799999
Q ss_pred cCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhhhcCCccccCCCCCCCCCCCcccccc
Q 021354 101 SSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLM 180 (313)
Q Consensus 101 t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~ 180 (313)
++++.+.++-++.|+++.+++++++|||++++ ++.++++++.|+.+... + +
T Consensus 138 ~svs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~--~-~-------------------- 188 (350)
T PTZ00343 138 GAVSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV--K-E-------------------- 188 (350)
T ss_pred ccHHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec--c-c--------------------
Confidence 99999999999999999999999999999999 99999999999987552 1 0
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC------hhHHHHHHHHHHHHHHHHHHHhhcCCCC--cccc---
Q 021354 181 GSPSVSNWVTGGFLLAAQCFLLSIWSILLTQIINIYP------AELLVAFLYNLFAAVIAVPLCLFAEPDL--SLWR--- 249 (313)
Q Consensus 181 ~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~------~~~~~t~~~~l~~~~~~~~~~~~~~~~~--~~~~--- 249 (313)
.+. ...|++++++|+++|+.|++..|+..++.+ ++.....++.+.+++.++|+....|... ..+.
T Consensus 189 ---~~~-~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~ 264 (350)
T PTZ00343 189 ---LHF-TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYT 264 (350)
T ss_pred ---chh-HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence 112 257999999999999999999999765431 2455666678899999999887555321 1110
Q ss_pred -ccChhhHHHHHHHHhhhhHHHHHHHHH----HhhccCceeeecccchHHHHHHHHHHHHhcCcccc
Q 021354 250 -LKPDVALVSIVYSAFLGPSFNTIIHTW----GLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 311 (313)
Q Consensus 250 -~~~~~~~~~ll~lgv~~s~~~~~l~~~----~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~~ 311 (313)
......+..+++. ++.++++|.+|+. ++++.+|...+...+++|++++++|++++||++++
T Consensus 265 ~~~~~~~~~~~l~~-i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~ 330 (350)
T PTZ00343 265 ANMTNYTKGIIIFK-IFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTL 330 (350)
T ss_pred hcccccchHHHHHH-HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCch
Confidence 0011122344554 5678999999995 99999999999999999999999999999999985
No 12
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.89 E-value=5.6e-21 Score=173.62 Aligned_cols=262 Identities=24% Similarity=0.318 Sum_probs=196.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHHH
Q 021354 8 REALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG 87 (313)
Q Consensus 8 ~~~~~~l~l~~~~~~~g~~~~~~K~~l~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 87 (313)
+........+...+.|+.+....|...++..++....+.|+..+.+.+.+..... +... ++ ..++.......+.++
T Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~-~~~~~~~~~~~~~~~ 79 (292)
T COG0697 4 ALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLE--PRGL-RP-ALRPWLLLLLLALLG 79 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhh--cccc-cc-cccchHHHHHHHHHH
Confidence 3445667777788999999999999866547778888889999998855443322 1111 11 122233455556565
Q ss_pred -HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHH-HHhhhcccccccccccchhhHHHHHHhHHHHhhhcCCccccCC
Q 021354 88 -VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAV-LFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGT 165 (313)
Q Consensus 88 -~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~-~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~~~g~~~~~~~ 165 (313)
..++.+++.++++++++.++.+.++.|+++.++++ ++++||++++ ++.|+++++.|+.++... +.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~~-~~------ 146 (292)
T COG0697 80 LALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILLG-GG------ 146 (292)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheecC-CC------
Confidence 78999999999999999999999999999999997 6679999999 999999999999887641 10
Q ss_pred CCCCCCCCCccccccCCCCCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHH-HHHHHHHHHHHHHHhhcCC
Q 021354 166 SPSSTHSTNSLHWLMGSPSVSN-WVTGGFLLAAQCFLLSIWSILLTQIINIYPAELLVAF-LYNLFAAVIAVPLCLFAEP 243 (313)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~-~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~t~-~~~l~~~~~~~~~~~~~~~ 243 (313)
.+.. ...|+++.+.++++|+++.+..|+.. +.+ +..... ++.+ +...........+.
T Consensus 147 ------------------~~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~ 205 (292)
T COG0697 147 ------------------GGGILSLLGLLLALAAALLWALYTALVKRLS-RLG-PVTLALLLQLL-LALLLLLLFFLSGF 205 (292)
T ss_pred ------------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-hHHHHHHHHHH-HHHHHHHHHHhccc
Confidence 0111 36899999999999999999999876 443 345555 4444 22222211111111
Q ss_pred CCccccccChhhHHHHHHHHhhhhHHHHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCcccc
Q 021354 244 DLSLWRLKPDVALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 311 (313)
Q Consensus 244 ~~~~~~~~~~~~~~~ll~lgv~~s~~~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~~ 311 (313)
+ . ......+..+.+.|++++++++.+|++++++.+++.++.+.+++|+++++++++++||+++.
T Consensus 206 ~---~-~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~ 269 (292)
T COG0697 206 G---A-PILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSP 269 (292)
T ss_pred c---c-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcH
Confidence 1 1 11234678888999999999999999999999999999999999999999999999999975
No 13
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.88 E-value=4e-20 Score=171.22 Aligned_cols=279 Identities=18% Similarity=0.197 Sum_probs=202.0
Q ss_pred hhhhhhHHHHHHHHHHH---HHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHH
Q 021354 5 KFFREALLLSATVAVEC---TTVGLNTLFKAAASKGLS-YYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRI 80 (313)
Q Consensus 5 ~~~~~~~~~l~l~~~~~---~~g~~~~~~K~~l~~~~~-p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (313)
++.++++-+..+++++. +-.++.+.....-+.+.+ |..-.++-+..-.++..+....+++++.. .+..++++++.
T Consensus 4 ~~~~~~~~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~-~~~~~~~~w~y 82 (334)
T PF06027_consen 4 SFLFTRRFWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKW-LKVLKRPWWKY 82 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccc-hhhcchhHHHH
Confidence 33455555555554433 444445555544444444 55555555555555555655444233222 23345677888
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhhhcCCc
Q 021354 81 ILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPT 160 (313)
Q Consensus 81 ~~~g~~~~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~~~g~~ 160 (313)
++++++....+++...|++||+.+.+.++..+.-.++.+++++++|||.++. |++|+++|+.|+.++...+.
T Consensus 83 ~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~-- 154 (334)
T PF06027_consen 83 FLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDV-- 154 (334)
T ss_pred HHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeecc--
Confidence 8999999999999999999999999999998888899999999999999999 99999999999888775211
Q ss_pred cccCCCCCCCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhh
Q 021354 161 IFLGTSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLF 240 (313)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~ 240 (313)
.+ .+ . ...+++..+||++++.|+++||++++.+++..++.+ ..++..+..++|.++..+...+
T Consensus 155 ~~--~~--------~------~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~i 217 (334)
T PF06027_consen 155 LS--GS--------D------SSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAI 217 (334)
T ss_pred cc--cc--------c------CCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHh
Confidence 10 00 0 112455689999999999999999999999998876 5788888889999988888777
Q ss_pred cCCC-CccccccChhhHHHHHHHHhhhhHHHHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCcccc
Q 021354 241 AEPD-LSLWRLKPDVALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 311 (313)
Q Consensus 241 ~~~~-~~~~~~~~~~~~~~ll~lgv~~s~~~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~~ 311 (313)
+|.+ ....+. +...........++...-|.+....++..+|+.+.+-..+..+++++++++++||++++
T Consensus 218 le~~~i~~~~w--~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ 287 (334)
T PF06027_consen 218 LERSGIESIHW--TSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSW 287 (334)
T ss_pred eehhhhhccCC--ChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccH
Confidence 7654 222222 22222222222235567777888999999999999999999999999999999999886
No 14
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.82 E-value=4.5e-18 Score=151.27 Aligned_cols=261 Identities=13% Similarity=0.098 Sum_probs=201.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCcc-CCCccHHHHHHHHHHHHHH
Q 021354 9 EALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTV-VPSFKFSILSRIILLSFIG 87 (313)
Q Consensus 9 ~~~~~l~l~~~~~~~g~~~~~~K~~l~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~ 87 (313)
..++++..+.+.++||..+...|.. ++ .|+.++.++|..-+..++.......|+++.. .-..+.+.+......++..
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~~-~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li 82 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLL-EP-LPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI 82 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH-cc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 4678999999999999999999985 54 9999999999999987776655544122111 0012334556666667776
Q ss_pred HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhhhcCCccccCCCC
Q 021354 88 VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSP 167 (313)
Q Consensus 88 ~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~~~g~~~~~~~~~ 167 (313)
..++..+.|+..+...-++|.=++..|++..+++.+++|||+++- ||++++++.+|+.......|
T Consensus 83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~------Q~iAV~lA~~GV~~~~~~~g--------- 147 (293)
T COG2962 83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRL------QWIAVGLAAAGVLIQTWLLG--------- 147 (293)
T ss_pred HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHH------HHHHHHHHHHHHHHHHHHcC---------
Confidence 889999999999999999999999999999999999999999999 99999999999987765221
Q ss_pred CCCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q 021354 168 SSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEPDLSL 247 (313)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~ 247 (313)
+..| ..+.=+++|+.|...-|+. +.+ +.+-....++.-....+...+..+...+.
T Consensus 148 -----------------~lpw-----val~la~sf~~Ygl~RK~~--~v~-a~~g~~lE~l~l~p~al~yl~~l~~~~~~ 202 (293)
T COG2962 148 -----------------SLPW-----VALALALSFGLYGLLRKKL--KVD-ALTGLTLETLLLLPVALIYLLFLADSGQF 202 (293)
T ss_pred -----------------CCcH-----HHHHHHHHHHHHHHHHHhc--CCc-hHHhHHHHHHHHhHHHHHHHHHHhcCchh
Confidence 2223 5666788999999876543 333 36666777777777777666655543321
Q ss_pred ccccChhhHHHHHHHHhhhhHHHHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCccccC
Q 021354 248 WRLKPDVALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHLG 312 (313)
Q Consensus 248 ~~~~~~~~~~~ll~lgv~~s~~~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~~~ 312 (313)
...+++..+..++..|+ .|+++..++..+-|+++-+..+...|++|..-.+++++++||+++..
T Consensus 203 ~~~~~~~~~~LLv~aG~-vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~ 266 (293)
T COG2962 203 LQQNANSLWLLLVLAGL-VTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSD 266 (293)
T ss_pred hhcCCchHHHHHHHhhH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 11123345666677776 78999999999999999999999999999999999999999999853
No 15
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.80 E-value=8.3e-18 Score=154.49 Aligned_cols=255 Identities=15% Similarity=0.116 Sum_probs=184.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHHHHHHHH
Q 021354 13 LSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQI 92 (313)
Q Consensus 13 ~l~l~~~~~~~g~~~~~~K~~l~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 92 (313)
++..++++++||++++..|.. . +.++.++. |..++.+++..+.... +++++ ..++.+..-...|+.-...+.
T Consensus 3 ~l~~lia~~~wGs~g~~~k~~-~-g~~~~~~~--~~~~g~l~~~~~~~~~-~~~~~---~~~~~~~~g~l~G~~w~ig~~ 74 (290)
T TIGR00776 3 ILIALIPALFWGSFVLINVKI-G-GGPYSQTL--GTTFGALILSIAIAIF-VLPEF---WALSIFLVGLLSGAFWALGQI 74 (290)
T ss_pred hHHHHHHHHHHhhhHHHHhcc-C-CCHHHHHH--HHHHHHHHHHHHHHHH-hCCcc---cccHHHHHHHHHHHHHHhhhh
Confidence 677888999999999999985 3 68888886 7888887776655544 11111 112333333333444466779
Q ss_pred HHHHHhhccCchhhhhhcc-hhhHHHHHHHHHHhhhcccccccccccc----hhhHHHHHHhHHHHhhhcCCccccCCCC
Q 021354 93 FGYTGIACSSPTLSSAISN-LTPAFTFTLAVLFRMEKLALRTLSTQAK----IIGTMVSISGALVVVLYKGPTIFLGTSP 167 (313)
Q Consensus 93 ~~~~gl~~t~a~~as~i~~-~~P~~~~ll~~~~~~E~~~~~~~~s~~~----~~gi~l~~~G~~ll~~~~g~~~~~~~~~ 167 (313)
+++.++++++.+.+..+.+ +.|++..+.+.+++|||.+++ + ++|+++.++|+.++...++++.
T Consensus 75 ~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~------~~~~~~~g~~l~l~G~~l~~~~~~~~~------ 142 (290)
T TIGR00776 75 NQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSI------QTLLGLLALILIIIGVYLTSRSKDKSA------ 142 (290)
T ss_pred hHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchH------HHHHHHHHHHHHHHhHheEEecccccc------
Confidence 9999999999999999988 889999999999999999988 8 9999999999877653111000
Q ss_pred CCCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHH---HHHHHHHHHHhhcCCC
Q 021354 168 SSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLTQIINIYPAELLVAFLYNL---FAAVIAVPLCLFAEPD 244 (313)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~t~~~~l---~~~~~~~~~~~~~~~~ 244 (313)
. .++..+...|..+.+.++++|+.|.+..|+. ++ +|...++.+.. ++++...+.. ..+
T Consensus 143 -------~------~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~-~~~~~~~~~~~g~~~~~~~~~~~~-~~~-- 203 (290)
T TIGR00776 143 -------G------IKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GV-DGLSVLLPQAIGMVIGGIIFNLGH-ILA-- 203 (290)
T ss_pred -------c------cccccchhhHHHHHHHHHHHHHHHHHHHHHc--CC-CcceehhHHHHHHHHHHHHHHHHH-hcc--
Confidence 0 0000333579999999999999999999875 34 35777555443 3443333222 101
Q ss_pred CccccccChhhHHHHHHHHhhhhHHHHHHHHHHhh-ccCceeeecccchHHHHHHHHHHHHhcCcccc
Q 021354 245 LSLWRLKPDVALVSIVYSAFLGPSFNTIIHTWGLR-LKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 311 (313)
Q Consensus 245 ~~~~~~~~~~~~~~ll~lgv~~s~~~~~l~~~~l~-~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~~ 311 (313)
.++ .+...+..++ .|++ ..+++.+|..+.+ +.+++..+...+++|++++++++++++|+.+.
T Consensus 204 -~~~--~~~~~~~~~~-~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~ 266 (290)
T TIGR00776 204 -KPL--KKYAILLNIL-PGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTK 266 (290)
T ss_pred -cch--HHHHHHHHHH-HHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 112 1222344444 8887 7999999999999 99999999999999999999999999999875
No 16
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.80 E-value=1.5e-17 Score=144.50 Aligned_cols=253 Identities=17% Similarity=0.098 Sum_probs=200.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHHHHHHH
Q 021354 12 LLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQ 91 (313)
Q Consensus 12 ~~l~l~~~~~~~g~~~~~~K~~l~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 91 (313)
+++.++.++..-=....+.|..... .+|...+++|..++++++.++.+- ++ ++..++++..+...|..-...|
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLIll~l~RP-----wr-~r~~~~~~~~~~~yGvsLg~MN 85 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALILLALFRP-----WR-RRLSKPQRLALLAYGVSLGGMN 85 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHHHHHHhhH-----HH-hccChhhhHHHHHHHHHHHHHH
Confidence 6777777777666667788887765 999999999999999999887432 22 3456788888888888877788
Q ss_pred HHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhhhcCCccccCCCCCCCC
Q 021354 92 IFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTH 171 (313)
Q Consensus 92 ~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~~~g~~~~~~~~~~~~~ 171 (313)
.+||.+++..|-+.+..+=.+-|+.+.+++ .+| .+ ..+.+.+++.|+.++.- .++
T Consensus 86 l~FY~si~riPlGiAVAiEF~GPL~vA~~~----sRr--~~------d~vwvaLAvlGi~lL~p-~~~------------ 140 (292)
T COG5006 86 LLFYLSIERIPLGIAVAIEFTGPLAVALLS----SRR--LR------DFVWVALAVLGIWLLLP-LGQ------------ 140 (292)
T ss_pred HHHHHHHHhccchhhhhhhhccHHHHHHHh----ccc--hh------hHHHHHHHHHHHHhhee-ccC------------
Confidence 999999999999999999999999888764 111 12 56777888899887663 111
Q ss_pred CCCccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhhcCCCCcccccc
Q 021354 172 STNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEPDLSLWRLK 251 (313)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 251 (313)
+.++....|..+++.+..||+.|++..||.-+..+ ..+-+...+.++++..+|+.....+ +.-+++
T Consensus 141 -----------~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~-g~~g~a~gm~vAaviv~Pig~~~ag-~~l~~p- 206 (292)
T COG5006 141 -----------SVWSLDPVGVALALGAGACWALYIVLGQRAGRAEH-GTAGVAVGMLVAALIVLPIGAAQAG-PALFSP- 206 (292)
T ss_pred -----------CcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCC-CchHHHHHHHHHHHHHhhhhhhhcc-hhhcCh-
Confidence 11233479999999999999999999999765544 3677888999999999999875432 221221
Q ss_pred ChhhHHHHHHHHhhhhHHHHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCccccC
Q 021354 252 PDVALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHLG 312 (313)
Q Consensus 252 ~~~~~~~ll~lgv~~s~~~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~~~ 312 (313)
.-...-+..|+++|++.|.+=.-+++|.+...-+..+.+||.++.+.|++++||.+|+.
T Consensus 207 --~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~ 265 (292)
T COG5006 207 --SLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLI 265 (292)
T ss_pred --HHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHH
Confidence 23455567899999999999999999999999999999999999999999999999863
No 17
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.66 E-value=4.7e-17 Score=142.36 Aligned_cols=271 Identities=17% Similarity=0.187 Sum_probs=190.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHHHHH
Q 021354 10 ALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVL 89 (313)
Q Consensus 10 ~~~~l~l~~~~~~~g~~~~~~K~~l~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 89 (313)
.+...++.++ ..+.+..++.+..+ +.+|.+....|+..-.++-.|....+ ..... .+-.+ .+.+++.|+.|+.
T Consensus 37 ~~gl~l~~vs-~ff~~~~vv~t~~~--e~~p~e~a~~r~l~~mlit~pcliy~-~~~v~-gp~g~--R~~LiLRg~mG~t 109 (346)
T KOG4510|consen 37 NLGLLLLTVS-YFFNSCMVVSTKVL--ENDPMELASFRLLVRMLITYPCLIYY-MQPVI-GPEGK--RKWLILRGFMGFT 109 (346)
T ss_pred ccCceehhhH-HHHhhHHHhhhhhh--ccChhHhhhhhhhhehhhhheEEEEE-eeeee-cCCCc--EEEEEeehhhhhh
Confidence 3344455555 55555555555554 36999999999888777777766554 11111 11122 2346678899977
Q ss_pred HHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhhhcCCccccCCCCCC
Q 021354 90 SQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSS 169 (313)
Q Consensus 90 ~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~~~g~~~~~~~~~~~ 169 (313)
.....|++++|.+-+.|++|..+.|++|.+++|.++|||.++. ...|..+.+.|+++++. +.+-+..+.++
T Consensus 110 gvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~------eaL~s~itl~GVVLIvR---PpFlFG~~t~g 180 (346)
T KOG4510|consen 110 GVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKF------EALGSLITLLGVVLIVR---PPFLFGDTTEG 180 (346)
T ss_pred HHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHH------HHHHHHHhhheEEEEec---CCcccCCCccc
Confidence 8888899999999999999999999999999999999999888 99999999999998874 33322111101
Q ss_pred CCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 021354 170 THSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEPDLSLWR 249 (313)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~ 249 (313)
. + ++.......|...++.+++.-|.-.++.|+.-|+... ....++..+++.+..++.....+ .++
T Consensus 181 ~---~-------~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h~-~msvsyf~~i~lV~s~I~~~~ig----~~~ 245 (346)
T KOG4510|consen 181 E---D-------SSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAHA-IMSVSYFSLITLVVSLIGCASIG----AVQ 245 (346)
T ss_pred c---c-------cccccccCCchHHHHHhHhhhhhHHHHHHHhhccccE-EEEehHHHHHHHHHHHHHHhhcc----cee
Confidence 0 0 1111122456777777777777666777777666543 44455666666666655443222 222
Q ss_pred cc-ChhhHHHHHHHHhhhhHHHHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCccccC
Q 021354 250 LK-PDVALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHLG 312 (313)
Q Consensus 250 ~~-~~~~~~~ll~lgv~~s~~~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~~~ 312 (313)
.+ -..+|+.++.+|++ +.++..+.+.++++..+..+++..+..-++|.++.++++||.+|+-
T Consensus 246 lP~cgkdr~l~~~lGvf-gfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~w 308 (346)
T KOG4510|consen 246 LPHCGKDRWLFVNLGVF-GFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIW 308 (346)
T ss_pred cCccccceEEEEEehhh-hhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHH
Confidence 21 23457777788884 4678888999999999999999999999999999999999999874
No 18
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.51 E-value=9e-14 Score=110.49 Aligned_cols=124 Identities=22% Similarity=0.342 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHHH-HHHHHHHHHHhh
Q 021354 21 CTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-VLSQIFGYTGIA 99 (313)
Q Consensus 21 ~~~g~~~~~~K~~l~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~gl~ 99 (313)
++||.+.++.|...++ +||....++|+..+++ +.+..... +++.. .+.+.+++......|.++ ...+.+++.|++
T Consensus 1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLIL-GRKPF-KNLSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhh-ccccc-cCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 4699999999998765 9999999999999997 55555444 33222 345667777888888886 889999999999
Q ss_pred ccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHh
Q 021354 100 CSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV 154 (313)
Q Consensus 100 ~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~ 154 (313)
+++++.++.+.++.|+++.++++++++|+++++ +++|+++.+.|++++.
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS 125 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 9999999999998754
No 19
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.49 E-value=2.6e-13 Score=124.24 Aligned_cols=201 Identities=18% Similarity=0.307 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhhhcCCccccCC
Q 021354 86 IGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGT 165 (313)
Q Consensus 86 ~~~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~~~g~~~~~~~ 165 (313)
+=+..+.++..++.+|+++..+++.++.-+||.+++..+..||+++. |.+++++++.|++++...+.++.
T Consensus 168 lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~~s~~~---- 237 (416)
T KOG2765|consen 168 LWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMGDSKQN---- 237 (416)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEecccccc----
Confidence 33778899999999999999999999999999999999999999999 99999999999988775322110
Q ss_pred CCCCCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC---hhHHHHHHHHHHHHHHHHHHHhhcC
Q 021354 166 SPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLTQIINIYP---AELLVAFLYNLFAAVIAVPLCLFAE 242 (313)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~---~~~~~t~~~~l~~~~~~~~~~~~~~ 242 (313)
+ +..+.+...|+++++++++.||+|+++.||...+.. |-...-.+..++..+.+-|..++.+
T Consensus 238 ----------~-----~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~ 302 (416)
T KOG2765|consen 238 ----------S-----DLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILD 302 (416)
T ss_pred ----------c-----cCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 0 112344579999999999999999999998765542 2122223333444444444443321
Q ss_pred C-CCccccccChhhHHHHHHHHhhhhHHHHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCcccc
Q 021354 243 P-DLSLWRLKPDVALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 311 (313)
Q Consensus 243 ~-~~~~~~~~~~~~~~~ll~lgv~~s~~~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~~ 311 (313)
. ..+.++.+.......+++.+.+++.++.++|.++.--.+|..+.+-+.++-..|++.+.++=|.++++
T Consensus 303 ~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~ 372 (416)
T KOG2765|consen 303 FFGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSA 372 (416)
T ss_pred HhccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCH
Confidence 1 12233443434455677889999999999999999999999999999999999999999987776653
No 20
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.48 E-value=4.3e-13 Score=105.27 Aligned_cols=135 Identities=16% Similarity=0.134 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHHHHHHH
Q 021354 12 LLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQ 91 (313)
Q Consensus 12 ~~l~l~~~~~~~g~~~~~~K~~l~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 91 (313)
...+.+++++.||....+.|++++ ++||......|-.....++..+.... ++.......+.|.+..+.+-|+.+....
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~-~vdp~~At~IRtiVi~~~l~~v~~~~-g~~~~~~~~~~k~~lflilSGla~glsw 81 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLE-GVDPDFATTIRTIVILIFLLIVLLVT-GNWQAGGEIGPKSWLFLILSGLAGGLSW 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHHHHHHHHhc-CceecccccCcceehhhhHHHHHHHHHH
Confidence 467788899999999999999987 59999999999999998888887765 4333222346677888888888889999
Q ss_pred HHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHh
Q 021354 92 IFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV 154 (313)
Q Consensus 92 ~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~ 154 (313)
.+||.+++...++...-+-.+.|+++.++++++++||++.+ +|+|+.+..+|++++.
T Consensus 82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs 138 (140)
T COG2510 82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEe
Confidence 99999999999999999999999999999999999999999 9999999999998754
No 21
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.43 E-value=7.6e-11 Score=109.01 Aligned_cols=257 Identities=14% Similarity=0.161 Sum_probs=186.0
Q ss_pred HHHHHHHHHhC-CCC--HHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 021354 26 LNTLFKAAASK-GLS--YYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSS 102 (313)
Q Consensus 26 ~~~~~K~~l~~-~~~--p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~t~ 102 (313)
+....+..... ... |..+++..+....+.-.+..... + +.. .++..+.+.+..++.....+.+-..+++|.|
T Consensus 15 ~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~-~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~ 89 (303)
T PF08449_consen 15 YGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLF-K-FPK---SRKIPLKKYAILSFLFFLASVLSNAALKYIS 89 (303)
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhc-c-ccC---CCcChHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33444444433 244 88999999998887766655443 2 111 1223345567778888889999999999999
Q ss_pred chhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhhhcCCccccCCCCCCCCCCCccccccCC
Q 021354 103 PTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGS 182 (313)
Q Consensus 103 a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 182 (313)
...-.++-...|+.+.+++.+++|+|.+++ ++.++++..+|+.+....+..+- + .. .
T Consensus 90 ~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~-----~-------~~-----~ 146 (303)
T PF08449_consen 90 YPTQIVFKSSKPIPVMILGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSS-----S-------SS-----N 146 (303)
T ss_pred hHHHHHHhhhHHHHHHHHHHHhcCccccHH------HHHHHHHHHhhHheeeecccccc-----c-------cc-----c
Confidence 998899999999999999999999999999 99999999999987664211110 0 00 1
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC-hhHHHHHHHHHHHHHHHHHHHhh--cCCCCc--cccccChhhHH
Q 021354 183 PSVSNWVTGGFLLAAQCFLLSIWSILLTQIINIYP-AELLVAFLYNLFAAVIAVPLCLF--AEPDLS--LWRLKPDVALV 257 (313)
Q Consensus 183 ~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~-~~~~~t~~~~l~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~ 257 (313)
..+.++..|+.+++.+.++.+...+.+++..++++ ++.+..++..+++.+...+.... .++..+ ++....+..+.
T Consensus 147 ~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~ 226 (303)
T PF08449_consen 147 SSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLL 226 (303)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHH
Confidence 11122345999999999999999999999876554 45788999999999988887766 222111 11111223344
Q ss_pred HHHHHHhhhhHHHHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCcccc
Q 021354 258 SIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 311 (313)
Q Consensus 258 ~ll~lgv~~s~~~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~~ 311 (313)
.++...+ ...++....++.+++.|+...++...+--+++++++++++|+++++
T Consensus 227 ~l~~~s~-~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~ 279 (303)
T PF08449_consen 227 YLLLFSL-TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSP 279 (303)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCCh
Confidence 4444444 4455666667889999999999999999999999999999999886
No 22
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.20 E-value=2.9e-09 Score=95.40 Aligned_cols=221 Identities=14% Similarity=0.203 Sum_probs=154.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHH
Q 021354 73 KFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALV 152 (313)
Q Consensus 73 ~~~~~~~~~~~g~~~~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~l 152 (313)
.+++..+..+-+++....+.+.+.++++.+|+.-.++.++-.++|++++++++|+|++++ ||+++.+-++|+.+
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~l 86 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVVL 86 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHhe
Confidence 457778888999999889999999999999999999999999999999999999999999 99999999999887
Q ss_pred HhhhcCCccccCCCCCCCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcChh-HHHHHHHHHHHH
Q 021354 153 VVLYKGPTIFLGTSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLTQIINIYPAE-LLVAFLYNLFAA 231 (313)
Q Consensus 153 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~-~~~t~~~~l~~~ 231 (313)
+-.. + ... ++.+.++..++ ...+.+...|.++.+.++++-++..++..+..|+.+.+ ..-.....++|.
T Consensus 87 v~~~-~-~~~---~~~~~~~~~~~-----~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi 156 (244)
T PF04142_consen 87 VQLS-S-SQS---SDNSSSSSVHH-----DASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGI 156 (244)
T ss_pred eecC-C-ccc---ccccccccccc-----ccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 5531 1 110 00000000000 11133457899999999999999999999988775422 333333455555
Q ss_pred HHHHHHHhhcCCC-CccccccChhhHHHHHHHHhhhhHHHHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCccc
Q 021354 232 VIAVPLCLFAEPD-LSLWRLKPDVALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLH 310 (313)
Q Consensus 232 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~lgv~~s~~~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~ 310 (313)
+..++.....+.+ ..+... -+.+-...+.-++..+++-.+....+|+.+...=+....++-+.+.+.++.++|.+++
T Consensus 157 ~~~~~~~~~~~~~~~~~~g~--f~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s 234 (244)
T PF04142_consen 157 LFNLLALLLSDGSAISESGF--FHGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPS 234 (244)
T ss_pred HHHHHHHhcccccccccCCc--hhhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 5555444333322 111110 0112222333444556666677788899888887788888999999999999999988
Q ss_pred c
Q 021354 311 L 311 (313)
Q Consensus 311 ~ 311 (313)
.
T Consensus 235 ~ 235 (244)
T PF04142_consen 235 L 235 (244)
T ss_pred h
Confidence 5
No 23
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.19 E-value=5.7e-11 Score=93.87 Aligned_cols=104 Identities=23% Similarity=0.379 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCcc-CCCccHHHHHHHHHHHHHH-HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHH
Q 021354 44 VAYSYPLATLALLPLPLIFRNTTTV-VPSFKFSILSRIILLSFIG-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLA 121 (313)
Q Consensus 44 ~~~R~~~a~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~-~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~ 121 (313)
+.+|+..+.+++..+...+ ++.+. .+..+++.+......|+++ ..++.++++|+++++ +.++.+.++.|+++.+++
T Consensus 1 aa~r~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~ 78 (113)
T PF13536_consen 1 AAFRYLFSVLFLLIILLIR-GRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLS 78 (113)
T ss_pred CHHHHHHHHHHHHHHHHHH-ccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHH
Confidence 3689999999988887765 33211 0122334455666778887 589999999999999 588899999999999999
Q ss_pred HHHhhhcccccccccccchhhHHHHHHhHHHHhh
Q 021354 122 VLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL 155 (313)
Q Consensus 122 ~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~ 155 (313)
++++|||++++ ++.|++++++|+.++..
T Consensus 79 ~~~~~er~~~~------~~~a~~l~~~Gv~li~~ 106 (113)
T PF13536_consen 79 WLFFKERLSPR------RWLAILLILIGVILIAW 106 (113)
T ss_pred HHHhcCCCCHH------HHHHHHHHHHHHHHHhh
Confidence 99999999999 99999999999998875
No 24
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.19 E-value=5.8e-10 Score=100.29 Aligned_cols=132 Identities=19% Similarity=0.255 Sum_probs=110.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHH
Q 021354 8 REALLLSATVAVECTTVGLNTLFKAAASKGLS--YYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSF 85 (313)
Q Consensus 8 ~~~~~~l~l~~~~~~~g~~~~~~K~~l~~~~~--p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 85 (313)
.+.++....+++++.|+......|...+ +.+ +.....+|+.++.+++.+..... ++.. ..+.+++......++
T Consensus 125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~---~~~~~~~~~~~~~~~ 199 (260)
T TIGR00950 125 INPAGLLLGLGSGISFALGTVLYKRLVK-KEGPELLQFTGWVLLLGALLLLPFAWFL-GPNP---QALSLQWGALLYLGL 199 (260)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHhh-cCCchHHHHHHHHHHHHHHHHHHHHHhc-CCCC---CcchHHHHHHHHHHH
Confidence 4456888999999999999999999865 366 44566688999999998887664 3222 235567767778888
Q ss_pred HH-HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhH
Q 021354 86 IG-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGA 150 (313)
Q Consensus 86 ~~-~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~ 150 (313)
++ ...+.++++++++.+++.++.+.++.|+++.++++++++||++.+ +++|..+.+.|+
T Consensus 200 ~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~ 259 (260)
T TIGR00950 200 IGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhc
Confidence 87 789999999999999999999999999999999999999999999 999999998886
No 25
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.09 E-value=2.3e-10 Score=90.73 Aligned_cols=108 Identities=21% Similarity=0.370 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhhcCCCCccccccChhhHHHHHHHHhhhhHHHHHHHHHHhh
Q 021354 200 FLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEPDLSLWRLKPDVALVSIVYSAFLGPSFNTIIHTWGLR 279 (313)
Q Consensus 200 ~~~a~~~v~~k~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~s~~~~~l~~~~l~ 279 (313)
++|+.+.+..|+..++.+ +...++++++.+++ +.+...+.+... ....+...+...++.+++++.+++.+++++++
T Consensus 1 ~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred ceeeeHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 478999999999988875 69999999999998 666665554322 11122345677888899889999999999999
Q ss_pred ccCceeeecccchHHHHHHHHHHHHhcCcccc
Q 021354 280 LKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 311 (313)
Q Consensus 280 ~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~~ 311 (313)
+.++++++.+.+++|+++.++++++++|+++.
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~ 108 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGERPSW 108 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999985
No 26
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.06 E-value=1.1e-10 Score=102.05 Aligned_cols=256 Identities=20% Similarity=0.190 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHHHHHHHHH
Q 021354 15 ATVAVECTTVGLNTLFKAAASKGL-SYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIF 93 (313)
Q Consensus 15 ~l~~~~~~~g~~~~~~K~~l~~~~-~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 93 (313)
.-++..++-+.++.-..++ ..++ .|..-.++-+..-+++-.|...+| ++. .+.. +...+++++...-.+++
T Consensus 23 GQiLSL~~t~~a~tss~la-~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR--~~~--~~~~---~~hYilla~~DVEaNy~ 94 (336)
T KOG2766|consen 23 GQILSLLITSTAFTSSELA-RKGINAPTSQTFLNYVLLALVYGPIMLFR--RKY--IKAK---WRHYILLAFVDVEANYF 94 (336)
T ss_pred HHHHHHHHHcchhhhHHHH-hccCCCccHHHHHHHHHHHHHHhhHHHhh--hHH--HHHH---HHHhhheeEEeecccEE
Confidence 4455556666666666655 3333 467778888888888888888775 211 1222 33467788888888889
Q ss_pred HHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhhhcCCccccCCCCCCCCCC
Q 021354 94 GYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHST 173 (313)
Q Consensus 94 ~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~~~g~~~~~~~~~~~~~~~ 173 (313)
...|.|||+-+....+-.-.-..+.+++|+++|.|.++. |+.|+++|+.|+.+++.. +.|..
T Consensus 95 vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlm------ki~gV~iCi~GvvmvV~s------------DV~ag 156 (336)
T KOG2766|consen 95 VVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLM------KISGVVICIVGVVMVVFS------------DVHAG 156 (336)
T ss_pred EeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhh------eeeeEEeEecceEEEEEe------------eeccc
Confidence 999999999877776654333356778999999999999 999999999999887751 12221
Q ss_pred CccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhhcCC-CCccccccC
Q 021354 174 NSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEP-DLSLWRLKP 252 (313)
Q Consensus 174 ~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~ 252 (313)
++ .++++-..||.+.++++-+||+.++......|+.+ ..+.+....++|+++..+- .+.+. +... ..+
T Consensus 157 d~-------aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~d-~~elm~~lgLfGaIIsaIQ-~i~~~~~~~t--l~w 225 (336)
T KOG2766|consen 157 DR-------AGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNAD-RVELMGFLGLFGAIISAIQ-FIFERHHVST--LHW 225 (336)
T ss_pred cc-------cCCCCCccCcEEEEecceeeeeccccHHHHHhcCc-HHHHHHHHHHHHHHHHHHH-Hhhhccceee--Eee
Confidence 11 13556689999999999999999999999999986 4888888899999988876 44443 2222 222
Q ss_pred hhhHHHHHHHH-hhhhHHHHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCcccc
Q 021354 253 DVALVSIVYSA-FLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 311 (313)
Q Consensus 253 ~~~~~~ll~lg-v~~s~~~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~~ 311 (313)
+... ..|++ .++..+-|.+--..+|..+++...+-...+-.+++++ ..+|-+++|
T Consensus 226 ~~~i--~~yl~f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~w 281 (336)
T KOG2766|consen 226 DSAI--FLYLRFALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDW 281 (336)
T ss_pred hHHH--HHHHHHHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhh
Confidence 2222 22333 2333444445556678999999999888899999887 445554544
No 27
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=98.99 E-value=1.7e-09 Score=99.59 Aligned_cols=246 Identities=11% Similarity=0.137 Sum_probs=175.7
Q ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhh
Q 021354 29 LFKAAAS--KGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLS 106 (313)
Q Consensus 29 ~~K~~l~--~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~t~a~~a 106 (313)
..|..++ .---|..+...++..+.+..+.....+ -.+.. +..++..+..++.+|++.....++-..++.|.+.+..
T Consensus 35 ~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~-~~~~~-~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~ 112 (316)
T KOG1441|consen 35 LNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLK-LVPPS-KISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFY 112 (316)
T ss_pred eeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhc-CCCCC-ccccccchHHHHHHHHHHHHHHHhcchhhhccchhHH
Confidence 3677776 324577788888888877666654443 22211 1113355667888898888889999999999999999
Q ss_pred hhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhhhcCCccccCCCCCCCCCCCccccccCCCCCC
Q 021354 107 SAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSPSVS 186 (313)
Q Consensus 107 s~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (313)
-.+=+++|.++.++++++.+|+.+++ .+..++..+.|+.+-.. .+.+.
T Consensus 113 q~iKa~~P~~tvl~~~~~~~~~~s~~------~~lsL~piv~GV~ias~--------------------------~e~~f 160 (316)
T KOG1441|consen 113 QTIKALMPPFTVLLSVLLLGKTYSSM------TYLSLLPIVFGVAIASV--------------------------TELSF 160 (316)
T ss_pred HHHHhhcchhHHHHHHHHhCCCCcce------EEEEEEEeeeeEEEeee--------------------------ccccc
Confidence 99999999999999999999999998 78888887778764332 11123
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHh----hcChhHHHHHHHHHHHHHHHH-HHHhhcCCCCcc-ccc-cChhhHHHH
Q 021354 187 NWVTGGFLLAAQCFLLSIWSILLTQIIN----IYPAELLVAFLYNLFAAVIAV-PLCLFAEPDLSL-WRL-KPDVALVSI 259 (313)
Q Consensus 187 ~~~~G~ll~l~aa~~~a~~~v~~k~~~~----~~~~~~~~t~~~~l~~~~~~~-~~~~~~~~~~~~-~~~-~~~~~~~~l 259 (313)
+ ..|.+.++++.+..+..++++|+..+ +. ++.....++.-++.+.++ |.....|++... +.. +++......
T Consensus 161 n-~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~-~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (316)
T KOG1441|consen 161 N-LFGFISAMISNLAFALRNILSKKLLTSKGESL-NSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLIL 238 (316)
T ss_pred c-HHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-CchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHH
Confidence 3 58999999999999999999999763 23 457888888888888888 777666553220 000 111222333
Q ss_pred HHHHhhhhHHHHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCcccc
Q 021354 260 VYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 311 (313)
Q Consensus 260 l~lgv~~s~~~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~~ 311 (313)
++..+ .........++.+.+.+|..-+..+.+--++.++.++++++|++++
T Consensus 239 ~~~sv-~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~ 289 (316)
T KOG1441|consen 239 LLNSV-LAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTF 289 (316)
T ss_pred HHHHH-HHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCch
Confidence 44443 2233345667888999999988888888888888888888887653
No 28
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=6.4e-07 Score=81.39 Aligned_cols=261 Identities=14% Similarity=0.160 Sum_probs=183.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHH-HHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHHHHHH
Q 021354 13 LSATVAVECTTVGLNTLFKAAASK-GLSYYVF-VAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLS 90 (313)
Q Consensus 13 ~l~l~~~~~~~g~~~~~~K~~l~~-~~~p~~~-~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 90 (313)
....+.-...=-.+-+.-|.++.+ +.|.... ..++.+...+++...-..+ --+. ++++++..++.+...++..+.
T Consensus 14 l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~-lv~~--~~l~~~~~kk~~P~~~lf~~~ 90 (314)
T KOG1444|consen 14 LLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLG-LVNF--RPLDLRTAKKWFPVSLLFVGM 90 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhc-eeec--CCcChHHHHHHccHHHHHHHH
Confidence 333333333333445567887765 3444333 3477777666655543221 1122 467788888888889888888
Q ss_pred HHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhhhcCCccccCCCCCCC
Q 021354 91 QIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSST 170 (313)
Q Consensus 91 ~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~~~g~~~~~~~~~~~~ 170 (313)
...-..+++|.+...-+++=+..|+++++...++++.+.+++ .|.++....+|...... +
T Consensus 91 i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~------v~~Sv~~m~~~s~~~~~---~----------- 150 (314)
T KOG1444|consen 91 LFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNK------VWASVFAMIIGSVAAAF---T----------- 150 (314)
T ss_pred HHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhh------HHHHHHHHHHHHHhhcc---c-----------
Confidence 888889999999999999999999999999999999777777 88898888888765332 0
Q ss_pred CCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC-hhHHHHHHHHHHHHHHHHHHHhhcCC-C----
Q 021354 171 HSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLTQIINIYP-AELLVAFLYNLFAAVIAVPLCLFAEP-D---- 244 (313)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~-~~~~~t~~~~l~~~~~~~~~~~~~~~-~---- 244 (313)
+-+-...|..+++.+.++-+.+.+..|+..+..+ ......++.++.+...+.....++++ +
T Consensus 151 -------------d~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~ 217 (314)
T KOG1444|consen 151 -------------DLSFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSL 217 (314)
T ss_pred -------------cceecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHh
Confidence 0111235899999999999999999998754321 23678889999999988888877654 1
Q ss_pred -CccccccChhhHHHHHHHHhhhhHHHHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCccccC
Q 021354 245 -LSLWRLKPDVALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHLG 312 (313)
Q Consensus 245 -~~~~~~~~~~~~~~ll~lgv~~s~~~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~~~ 312 (313)
.+.|.. ...+..+...++++-++.|. -.++.+..+++..+++....-....+-+....|++.++.
T Consensus 218 ~~~~~~~--~~~~~~~~lScv~gf~isy~-s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~ 283 (314)
T KOG1444|consen 218 NFDNWSD--SSVLVVMLLSCVMGFGISYT-SFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFL 283 (314)
T ss_pred hcccccc--hhHHHHHHHHHHHHHHHHHH-HHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechh
Confidence 111211 12356677888888888887 568899999999999995555666666666667777653
No 29
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.90 E-value=3.6e-08 Score=77.76 Aligned_cols=118 Identities=12% Similarity=0.102 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhhcCCCCccccccChhhHHHHHHHHhhhhHHHH
Q 021354 192 GFLLAAQCFLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEPDLSLWRLKPDVALVSIVYSAFLGPSFNT 271 (313)
Q Consensus 192 ~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~s~~~~ 271 (313)
..+++++++.+++-.+..|--.++.+ |...|....++..+.+.......++.... ....+..|..++..|+ +++++.
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~-~~~~~k~~lflilSGl-a~glsw 81 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTGNWQAG-GEIGPKSWLFLILSGL-AGGLSW 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcCceecc-cccCcceehhhhHHHH-HHHHHH
Confidence 46899999999999999998888774 68889999988888887777665432111 1123456888888884 889999
Q ss_pred HHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCccccC
Q 021354 272 IIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHLG 312 (313)
Q Consensus 272 ~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~~~ 312 (313)
.+|++++++..+++|....-.+|+++++++++++||++|..
T Consensus 82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~ 122 (140)
T COG2510 82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP 122 (140)
T ss_pred HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH
Confidence 99999999999999999999999999999999999999863
No 30
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.86 E-value=1e-07 Score=87.71 Aligned_cols=134 Identities=13% Similarity=0.097 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHHH-H
Q 021354 10 ALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-V 88 (313)
Q Consensus 10 ~~~~l~l~~~~~~~g~~~~~~K~~l~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~ 88 (313)
..+.+..+++++.|+...+..|...+ +.+|....... .++++++.++.... +. . ...+...+...+..|++. .
T Consensus 147 ~~G~ll~l~aa~~~a~~~v~~r~~~~-~~~~~~~~~~~-~~~~~~l~~~~~~~-~~-~--~~~~~~~~~~~l~lgv~~t~ 220 (293)
T PRK10532 147 LTGAALALGAGACWAIYILSGQRAGA-EHGPATVAIGS-LIAALIFVPIGALQ-AG-E--ALWHWSILPLGLAVAILSTA 220 (293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHHH-HHHHHHHHHHHHHc-cC-c--ccCCHHHHHHHHHHHHHHHH
Confidence 34678899999999999999998744 57887775544 55666677766543 22 1 122344444456788887 7
Q ss_pred HHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhh
Q 021354 89 LSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL 155 (313)
Q Consensus 89 ~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~ 155 (313)
..+.++++++++.+++.++.+.+++|++..++++++++|+++.. +++|.++.+.|++....
T Consensus 221 ~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~~ 281 (293)
T PRK10532 221 LPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGSTL 281 (293)
T ss_pred HHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHh
Confidence 78889999999999999999999999999999999999999999 99999999999887664
No 31
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.85 E-value=9.1e-08 Score=87.97 Aligned_cols=137 Identities=12% Similarity=0.010 Sum_probs=111.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHHH-
Q 021354 9 EALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG- 87 (313)
Q Consensus 9 ~~~~~l~l~~~~~~~g~~~~~~K~~l~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~- 87 (313)
+..+.+..+++++.|+......|.. +. -++.....+++..+++++.+..... +.... ...+.+.+......++++
T Consensus 148 ~~~G~l~~l~a~~~~a~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~i~~l~i~~s 223 (292)
T PRK11272 148 NPWGAILILIASASWAFGSVWSSRL-PL-PVGMMAGAAEMLAAGVVLLIASLLS-GERLT-ALPTLSGFLALGYLAVFGS 223 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhc-CC-CcchHHHHHHHHHHHHHHHHHHHHc-CCccc-ccCCHHHHHHHHHHHHHHH
Confidence 3457788889999999999999984 33 3456677889999988888776544 32211 112346677777888887
Q ss_pred HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhh
Q 021354 88 VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL 155 (313)
Q Consensus 88 ~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~ 155 (313)
...+.++++++++.++++++.+.++.|+++.++++++++|+++.. +++|.++.+.|++++..
T Consensus 224 ~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 224 IIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999999999999999999 99999999999987664
No 32
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=98.81 E-value=6.1e-06 Score=76.13 Aligned_cols=277 Identities=13% Similarity=0.126 Sum_probs=178.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHhhhhhhcCCC---ccCCC------ccHHHHH
Q 021354 11 LLLSATVAVECTTVGLNTLFKAAASKG---LSYYVFVAYSYPLATLALLPLPLIFRNTT---TVVPS------FKFSILS 78 (313)
Q Consensus 11 ~~~l~l~~~~~~~g~~~~~~K~~l~~~---~~p~~~~~~R~~~a~~~l~~~~~~~~~~~---~~~~~------~~~~~~~ 78 (313)
.-++.++...+.+++..+..|.+-..+ +.|...++.--.+-.++......+. +|+ +..+. ..+++..
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~-~~~~~~~~~~~l~~~i~~~~~~~l 93 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFE-ERKYAKKSLKSLSKEILAAPRETL 93 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHH-hhHHhhhhhhhcCHHHHhChHHHH
Confidence 446788888999999999999986555 6677777777777666655555443 221 11011 2234666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhhhcC
Q 021354 79 RIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKG 158 (313)
Q Consensus 79 ~~~~~g~~~~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~~~g 158 (313)
+..+-+++.+..+-+++.++.+.+|+.-.+..++--+.|+++..+++++|++++ ||.++++..+|+.++-....
T Consensus 94 k~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~~~~ 167 (345)
T KOG2234|consen 94 KVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQLPSL 167 (345)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhccCC
Confidence 777888888777779999999999999999999999999999999999999999 99999999999987552111
Q ss_pred CccccCCCCCCCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHH-HHHHHHHHHHH
Q 021354 159 PTIFLGTSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLTQIINIYPAELLVAFLY-NLFAAVIAVPL 237 (313)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~t~~~-~l~~~~~~~~~ 237 (313)
... +- .+...+.+...|....+.++++-+.-.+...+..|+-+.+.-+--.+ .++|.+.....
T Consensus 168 ~~~-------~a---------~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~ 231 (345)
T KOG2234|consen 168 SPT-------GA---------KSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLT 231 (345)
T ss_pred CCC-------Cc---------cCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH
Confidence 100 00 00112345578999999999999999999888887654322222222 23333333333
Q ss_pred HhhcCCCCccccccChhhHHHHHHHHhhhhHHHHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCcccc
Q 021354 238 CLFAEPDLSLWRLKPDVALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 311 (313)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~ll~lgv~~s~~~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~~ 311 (313)
.+..+.....|.- .-..+-...+.-++..+++-.+-...+|+.+--.=+-...+.-+++.+.++.++|-++|.
T Consensus 232 ~~~~d~~~i~~~g-ff~G~s~~vw~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~ 304 (345)
T KOG2234|consen 232 ILLQDGEAINEYG-FFYGYSSIVWLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTL 304 (345)
T ss_pred HhhccccccccCC-ccccccHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchH
Confidence 3332221111110 011222333333444455555566666666655444455577788888888888877763
No 33
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.74 E-value=3.7e-07 Score=86.33 Aligned_cols=138 Identities=12% Similarity=0.094 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHhhhhhhcCCCc---cCCCccHHHHHHHHHHHHHH
Q 021354 12 LLSATVAVECTTVGLNTLFKAAASKGLSY-YVFVAYSYPLATLALLPLPLIFRNTTT---VVPSFKFSILSRIILLSFIG 87 (313)
Q Consensus 12 ~~l~l~~~~~~~g~~~~~~K~~l~~~~~p-~~~~~~R~~~a~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~ 87 (313)
+.+.++++++.|+...++.|....+ .|| ....++....+++.+.+..... ++.. +....+.. ....+..++..
T Consensus 190 G~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~-~~~i~y~~i~t 266 (358)
T PLN00411 190 GGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVV-EKNNPSVWIIHFDIT-LITIVTMAIIT 266 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHH-ccCCcccceeccchH-HHHHHHHHHHH
Confidence 5577888999999999999987654 544 5667777776666555444443 2211 10111222 22233344433
Q ss_pred HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhhhcC
Q 021354 88 VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKG 158 (313)
Q Consensus 88 ~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~~~g 158 (313)
.+.+.++.+++++.+|+.++.+.++.|+++.++++++++|+++.. +++|.++.+.|+++....++
T Consensus 267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~------~~iG~~LIl~Gv~l~~~~~~ 331 (358)
T PLN00411 267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG------CLIGGILITLGFYAVMWGKA 331 (358)
T ss_pred HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhhhh
Confidence 567788999999999999999999999999999999999999999 99999999999988775433
No 34
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.73 E-value=2.6e-07 Score=85.07 Aligned_cols=132 Identities=18% Similarity=0.156 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHHHHHH
Q 021354 11 LLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLS 90 (313)
Q Consensus 11 ~~~l~l~~~~~~~g~~~~~~K~~l~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 90 (313)
.+.++.++++++|+...+..|... ++.+|..... ..+.+.+.+..... +.. . ...+.+.+..++..|+.....
T Consensus 156 ~G~~~~l~aa~~~A~~~v~~k~~~-~~~~~~~~~~---~~~~~~l~~~~~~~-~~~-~-~~~~~~~~~~l~~~~~~t~~~ 228 (295)
T PRK11689 156 LSYGLAFIGAFIWAAYCNVTRKYA-RGKNGITLFF---ILTALALWIKYFLS-PQP-A-MVFSLPAIIKLLLAAAAMGFG 228 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc-CCCCchhHHH---HHHHHHHHHHHHHh-cCc-c-ccCCHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999964 4578765432 33344444433333 221 1 224456666666666544778
Q ss_pred HHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhh
Q 021354 91 QIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL 155 (313)
Q Consensus 91 ~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~ 155 (313)
+.++++++++.+++.++.+.++.|++..++++++++|+++.. +++|.++.+.|+++...
T Consensus 229 ~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 229 YAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHhh
Confidence 999999999999999999999999999999999999999999 99999999999876553
No 35
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=98.67 E-value=2.7e-06 Score=76.75 Aligned_cols=270 Identities=15% Similarity=0.153 Sum_probs=165.8
Q ss_pred cchhhhhhHHHHHHHHHHH--HHHHHHHHHHHHHhCCCCHHHHHHHHH----HHHHHHHHhhhhhhcCCCccCCCccHHH
Q 021354 3 RRKFFREALLLSATVAVEC--TTVGLNTLFKAAASKGLSYYVFVAYSY----PLATLALLPLPLIFRNTTTVVPSFKFSI 76 (313)
Q Consensus 3 ~~~~~~~~~~~l~l~~~~~--~~g~~~~~~K~~l~~~~~p~~~~~~R~----~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 76 (313)
|.+++.++-..++++...- -.|..|...+.-.+-++ |..++.+.. ++|++..... .+ .+++.+-..++++
T Consensus 7 ~~~~~~~rV~~L~lVl~yY~~Si~Ltf~~~~~~~~f~f-PLf~ts~h~~v~flfa~~~~~l~--~~-~~~r~r~~~sw~~ 82 (349)
T KOG1443|consen 7 DNQFLMNRVLTLALVLLYYFLSIGLTFYFKWLTKNFHF-PLFVTSLHLAVKFLFAALSRRLY--QC-SVPRARVVLSWRD 82 (349)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcCC-chHHHHHHHHHHHHHHHHHHHHH--hc-cCCccccCCcHHH
Confidence 3455666666666665433 33445555555433333 455555544 4444433222 11 1111102345544
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhh
Q 021354 77 -LSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL 155 (313)
Q Consensus 77 -~~~~~~~g~~~~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~ 155 (313)
+.++..+|+..+..-.+-.++++|++.+.=+..=+..++|+.+++.++.-||.++. -..-+.+..+|+.+++.
T Consensus 83 ~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~------L~l~v~lI~~Glflft~ 156 (349)
T KOG1443|consen 83 YLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWA------LVLIVLLIAVGLFLFTY 156 (349)
T ss_pred HHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHH------HHHHHHHHhhheeEEEe
Confidence 55677888887888888889999999887777777899999999999999999887 55555555566655443
Q ss_pred hcCCccccCCCCCCCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC----hhHHHHHHHHHHHH
Q 021354 156 YKGPTIFLGTSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLTQIINIYP----AELLVAFLYNLFAA 231 (313)
Q Consensus 156 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~----~~~~~t~~~~l~~~ 231 (313)
|.. +. ...|..+.++++++-++-=...+...++.+ .|........-...
T Consensus 157 -KsT-------------------------qf-~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~ 209 (349)
T KOG1443|consen 157 -KST-------------------------QF-NIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMS 209 (349)
T ss_pred -ccc-------------------------ce-eehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHH
Confidence 221 11 257888888888887766555555544433 35555565566666
Q ss_pred HHHHHHHhhcCCC-Cc----cccc-cChhhHHHHHHHHhhhhHHHHH---HHHHHhhccCceeeecccchHHHHHHHHHH
Q 021354 232 VIAVPLCLFAEPD-LS----LWRL-KPDVALVSIVYSAFLGPSFNTI---IHTWGLRLKGPVYIAIFKPLSVVIAAITGI 302 (313)
Q Consensus 232 ~~~~~~~~~~~~~-~~----~~~~-~~~~~~~~ll~lgv~~s~~~~~---l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~ 302 (313)
+.++|..+.+|+. .. .+.. ++...+..+.+.+. +...++. .=+....+.+.-..|++.-..-+...++|.
T Consensus 210 ~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l-~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ 288 (349)
T KOG1443|consen 210 IGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISL-GGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAI 288 (349)
T ss_pred HHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHH-HHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHH
Confidence 7777777777763 11 1221 12122222222222 2223332 234456788888899999999999999999
Q ss_pred HHhcCccc
Q 021354 303 IFLGDTLH 310 (313)
Q Consensus 303 ~~l~E~l~ 310 (313)
++.+|.++
T Consensus 289 ii~~d~ls 296 (349)
T KOG1443|consen 289 IILKDQLS 296 (349)
T ss_pred HHhhcchh
Confidence 99999876
No 36
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.63 E-value=4e-07 Score=83.20 Aligned_cols=133 Identities=16% Similarity=0.110 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHH
Q 021354 10 ALLLSATVAVECTTVGLNTLFKAAASKGLSYY----VFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSF 85 (313)
Q Consensus 10 ~~~~l~l~~~~~~~g~~~~~~K~~l~~~~~p~----~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 85 (313)
.++.+..+++++.|+......|... ++.+|. ....+.+...++.+.+....+ +++.. .. ...........+.
T Consensus 143 ~~g~~~~l~aal~~a~~~i~~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~-~~~~~~~~~~~~~ 218 (281)
T TIGR03340 143 RKAYAWALAAALGTAIYSLSDKAAA-LGVPAFYSALGYLGIGFLAMGWPFLLLYLKR-HGRSM-FP-YARQILPSATLGG 218 (281)
T ss_pred hhHHHHHHHHHHHHHHhhhhccccc-cchhcccccHHHHHHHHHHHHHHHHHHHHHH-hccch-hh-hHHHHHHHHHHHH
Confidence 3456677888899999999888753 234442 233344433322222222222 11111 11 1222334445555
Q ss_pred HH-HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHH
Q 021354 86 IG-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALV 152 (313)
Q Consensus 86 ~~-~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~l 152 (313)
+. ...+.++++++++.+++.++.+.++.|++..++++++++|+++.. +++|.++.++|+.+
T Consensus 219 ~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~------~~iG~~lil~Gv~l 280 (281)
T TIGR03340 219 LMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLT------RLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHhHHh
Confidence 55 678899999999999999999999999999999999999999999 99999999999875
No 37
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.57 E-value=1.7e-06 Score=71.45 Aligned_cols=133 Identities=22% Similarity=0.333 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHhhhhhhcCCCccCCC---c-------cHHH
Q 021354 13 LSATVAVECTTVGLNTLFKAAASK------GLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPS---F-------KFSI 76 (313)
Q Consensus 13 ~l~l~~~~~~~g~~~~~~K~~l~~------~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~---~-------~~~~ 76 (313)
+...+.+.+.-+...+..|..+++ ..+|.++..+-...+.+++.|.+... |+....+. . ..+.
T Consensus 2 ~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 2 FILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLL-EGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHhhhhhhcchHHH
Confidence 466788889999999999998877 68999999999999999999988776 43221000 0 1234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHH
Q 021354 77 LSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALV 152 (313)
Q Consensus 77 ~~~~~~~g~~~~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~l 152 (313)
+..+...|++....+...+.-+++++|...++..+.-.+.+.++++++++|+++.+ ++.|+++++.|.++
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence 55566666777889999999999999999999999999999999999999999999 99999999999764
No 38
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.55 E-value=5.5e-07 Score=83.08 Aligned_cols=140 Identities=16% Similarity=0.180 Sum_probs=104.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHhhhhhhcCCCccCC-C-------ccHHHHHH
Q 021354 9 EALLLSATVAVECTTVGLNTLFKAAASK-GLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVP-S-------FKFSILSR 79 (313)
Q Consensus 9 ~~~~~l~l~~~~~~~g~~~~~~K~~l~~-~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~-~-------~~~~~~~~ 79 (313)
+..+.+..+++++.|+...+..|...++ +.||..+..+-...+++.+.|..... +...... . ........
T Consensus 143 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 221 (302)
T TIGR00817 143 NWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFIT-EGPPFLPHGFMQAISGVNVTKIYT 221 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHH-cchHHHHHHHHHhhcccCchHHHH
Confidence 4457788889999999999999987541 48999999999999999999987654 3211000 0 00011111
Q ss_pred -HHHHHHHH-HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhh
Q 021354 80 -IILLSFIG-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL 155 (313)
Q Consensus 80 -~~~~g~~~-~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~ 155 (313)
.+..+... ...+.+++.++++++|..+++..++.|+++.++++++++|+++.+ +++|.++.+.|+.+...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 222 VSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHHHHHH
Confidence 22222212 334467778999999999999999999999999999999999999 99999999999987664
No 39
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.54 E-value=1.7e-05 Score=71.45 Aligned_cols=205 Identities=17% Similarity=0.123 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhcc-hhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHH
Q 021354 75 SILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISN-LTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVV 153 (313)
Q Consensus 75 ~~~~~~~~~g~~~~~~~~~~~~gl~~t~a~~as~i~~-~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll 153 (313)
+.+...++.|++=...|...+.++++...+.+.=+.. ++=+.+.+.+.++|+|.-+.+.+ -....++++.++|+.+-
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~--~~G~~Al~liiiGv~lt 120 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQK--IIGFLALVLIIIGVILT 120 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchH--HHHHHHHHHHHHHHHHh
Confidence 6666677777777889999999999999998887765 56667889999999998776521 01234666777777653
Q ss_pred hhhcCCccccCCCCCCCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHH
Q 021354 154 VLYKGPTIFLGTSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLTQIINIYPAELLVAFLYNLFAAVI 233 (313)
Q Consensus 154 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~t~~~~l~~~~~ 233 (313)
.. ++++ +.+ .+++.+...|....+++++.|..|.+..|. .+. ++.....-|.+-..+.
T Consensus 121 s~-~~~~--------~~~----------~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~--~~~-~~~~~~lPqaiGm~i~ 178 (269)
T PF06800_consen 121 SY-QDKK--------SDK----------SSSKSNMKKGILALLISTIGYWIYSVIPKA--FHV-SGWSAFLPQAIGMLIG 178 (269)
T ss_pred cc-cccc--------ccc----------cccccchhhHHHHHHHHHHHHHHHHHHHHh--cCC-ChhHhHHHHHHHHHHH
Confidence 33 1110 000 112345568999999999999999999775 333 3466555554333333
Q ss_pred HHHHHhhcCCCCccccccChhhHHHHHHHHhhhhHHHHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCccc
Q 021354 234 AVPLCLFAEPDLSLWRLKPDVALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLH 310 (313)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~s~~~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~ 310 (313)
...+....++...+ . ..+..+ ..|++ =.++...+..+.++.|.+..=.+.-+..+++.+.|.++++|+=+
T Consensus 179 a~i~~~~~~~~~~~-k----~~~~ni-l~G~~-w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt 248 (269)
T PF06800_consen 179 AFIFNLFSKKPFFE-K----KSWKNI-LTGLI-WGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKT 248 (269)
T ss_pred HHHHhhcccccccc-c----chHHhh-HHHHH-HHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCc
Confidence 33333322211111 1 123322 22332 23566668888999999999999999999999999999999743
No 40
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.51 E-value=4.6e-06 Score=76.95 Aligned_cols=138 Identities=17% Similarity=0.204 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHHHhhhhhhcCCCcc----CCCccHHHHHHHHHH
Q 021354 10 ALLLSATVAVECTTVGLNTLFKAAASKGLSY--YVFVAYSYPLATLALLPLPLIFRNTTTV----VPSFKFSILSRIILL 83 (313)
Q Consensus 10 ~~~~l~l~~~~~~~g~~~~~~K~~l~~~~~p--~~~~~~R~~~a~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 83 (313)
..+.++.+.+++.|+...+..|...++.-+| .....+-...+.+.+....... +.... ....+.+.+..++.+
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l 220 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLIL-DGSATMIHSLVTIDMTTILSLMYL 220 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHh-cCchhhhhhhccCCHHHHHHHHHH
Confidence 3577888999999999999999864332122 2333333444433333222222 21110 012345677778888
Q ss_pred HHHH-HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHh
Q 021354 84 SFIG-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV 154 (313)
Q Consensus 84 g~~~-~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~ 154 (313)
|++. ...+.++++++++.+++.++.+.++.|++..++++++++|+++.. +++|.++.+.|+.+..
T Consensus 221 ~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~ 286 (299)
T PRK11453 221 AFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV 286 (299)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence 8888 788899999999999999999999999999999999999999999 9999999999987654
No 41
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.47 E-value=1.2e-06 Score=80.70 Aligned_cols=121 Identities=14% Similarity=0.163 Sum_probs=92.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhhcCCCCccc--cccChhhHHHHHHHHh
Q 021354 187 NWVTGGFLLAAQCFLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEPDLSLW--RLKPDVALVSIVYSAF 264 (313)
Q Consensus 187 ~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ll~lgv 264 (313)
+...|.+++++++++|+...+..|.. .+.+ |.+.+++.++++.+.+.+...... +.... .......+ .....+.
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~-~~~~~~~R~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~ 80 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYVP-ADEILTHRVIWSFFFMVVLMSICR-QWSYLKTLIQTPQKI-FMLAVSA 80 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-cCCC-HHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHcCHHHH-HHHHHHH
Confidence 34689999999999999999999864 5664 799999999999887776654432 11110 01111222 2233556
Q ss_pred hhhHHHHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCcccc
Q 021354 265 LGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 311 (313)
Q Consensus 265 ~~s~~~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~~ 311 (313)
+..++.+.++++++++.+++.++...++.|++.+++++++++|+++.
T Consensus 81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~ 127 (296)
T PRK15430 81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRR 127 (296)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 66778899999999999999999999999999999999999999875
No 42
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.44 E-value=1e-05 Score=70.54 Aligned_cols=204 Identities=13% Similarity=0.131 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhhhcCC
Q 021354 80 IILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGP 159 (313)
Q Consensus 80 ~~~~g~~~~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~~~g~ 159 (313)
..-+++-..+.++.-..+++|.|=-.+.+=-+.-|+=+.+++.++.+++.+|+ +..-+++.++|+.+... +.+
T Consensus 88 YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValFmY-K~~ 160 (337)
T KOG1580|consen 88 YAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALFMY-KEN 160 (337)
T ss_pred HHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHH------HHHHHHHHHHHHHHhhc-ccc
Confidence 33455555677888888999998655555566788888999999999998888 99999999999987665 432
Q ss_pred ccccCCCCCCCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC-hhHHHHHHHHHHHHHHHHHHH
Q 021354 160 TIFLGTSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLTQIINIYP-AELLVAFLYNLFAAVIAVPLC 238 (313)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~-~~~~~t~~~~l~~~~~~~~~~ 238 (313)
... +..+.+...|.++.++|---=+.-...|.+..+.+. ....++.+.++.+.+.+-.-.
T Consensus 161 Kv~-------------------g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~ 221 (337)
T KOG1580|consen 161 KVG-------------------GAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGL 221 (337)
T ss_pred ccC-------------------CCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhh
Confidence 211 113455678999999988877788888888765543 346788888988888766544
Q ss_pred hhcCCCCc--cccccChhhHHHHHHHHhhhhHHHHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCccc
Q 021354 239 LFAEPDLS--LWRLKPDVALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLH 310 (313)
Q Consensus 239 ~~~~~~~~--~~~~~~~~~~~~ll~lgv~~s~~~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~ 310 (313)
++.++..+ .+....+..|+.+..+++ ++.++.+..+..+..-||-.-|++...--.++++.++++++.+++
T Consensus 222 lfTGElweF~yF~~RhP~~~~~l~l~ai-~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls 294 (337)
T KOG1580|consen 222 LFTGELWEFFYFVQRHPYVFWDLTLLAI-ASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLS 294 (337)
T ss_pred eehhhHHHHHHHHHhccHHHHHHHHHHH-HHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCc
Confidence 44332111 111112345677777776 778888888999999999999999999999999999999999886
No 43
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.36 E-value=1.4e-05 Score=75.40 Aligned_cols=139 Identities=17% Similarity=0.184 Sum_probs=102.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHhhhhhhcCCCccCC----------Cc
Q 021354 9 EALLLSATVAVECTTVGLNTLFKAAASK------GLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVP----------SF 72 (313)
Q Consensus 9 ~~~~~l~l~~~~~~~g~~~~~~K~~l~~------~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~----------~~ 72 (313)
+..+.+..+++++.|+...+..|..+++ ..++.....+-...++++++|+.... |...... ..
T Consensus 192 ~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~-e~~~~~~~~~~~~~~~~~~ 270 (350)
T PTZ00343 192 TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFF-EGKKWVPVWTNYTANMTNY 270 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhhhccccc
Confidence 4568889999999999999999998753 25677777777889999998887643 3211000 00
Q ss_pred cHHH-HHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHH
Q 021354 73 KFSI-LSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGAL 151 (313)
Q Consensus 73 ~~~~-~~~~~~~g~~~~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ 151 (313)
.... +...+..++...+.+...+.+++++++..+++..++.|+++.++++++++|+++.. +++|.++.+.|++
T Consensus 271 ~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~ 344 (350)
T PTZ00343 271 TKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGAL 344 (350)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHH
Confidence 1111 11122222333455566668999999999999999999999999999999999999 9999999999997
Q ss_pred HHh
Q 021354 152 VVV 154 (313)
Q Consensus 152 ll~ 154 (313)
+..
T Consensus 345 lYs 347 (350)
T PTZ00343 345 LYS 347 (350)
T ss_pred HHh
Confidence 644
No 44
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.34 E-value=3.6e-06 Score=75.77 Aligned_cols=119 Identities=10% Similarity=0.146 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhhcCCCC---cccc-ccChhhHHHHHHHHhh
Q 021354 190 TGGFLLAAQCFLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEPDL---SLWR-LKPDVALVSIVYSAFL 265 (313)
Q Consensus 190 ~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~ll~lgv~ 265 (313)
.|..++++++++|+...+..|. ..+.+ |.+++++.++++++.+.+......... ..++ .+..+.+..+...|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKPLP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hccCC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 4788999999999999999997 45664 799999999999888776554332110 1111 1111123344455554
Q ss_pred hhHHHHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCcccc
Q 021354 266 GPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 311 (313)
Q Consensus 266 ~s~~~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~~ 311 (313)
..+.+.++++++++.+++.++...++.|++++++++++++|+++.
T Consensus 80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~ 124 (256)
T TIGR00688 80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISR 124 (256)
T ss_pred -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 567889999999999999999999999999999999999999985
No 45
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.24 E-value=1.1e-05 Score=66.41 Aligned_cols=120 Identities=13% Similarity=0.288 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh------cChhHHHHHHHHHHHHHHHHHHHhhcCCCCc-c-c-ccc------Chhh
Q 021354 191 GGFLLAAQCFLLSIWSILLTQIINI------YPAELLVAFLYNLFAAVIAVPLCLFAEPDLS-L-W-RLK------PDVA 255 (313)
Q Consensus 191 G~ll~l~aa~~~a~~~v~~k~~~~~------~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~-~-~-~~~------~~~~ 255 (313)
|.++++.|+++.+++.++.|+..++ ..++.....+....+.+.+.+...+.|+... . . ... ....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 6789999999999999999987655 2357888999999999999999887765321 1 1 000 1133
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCcccc
Q 021354 256 LVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 311 (313)
Q Consensus 256 ~~~ll~lgv~~s~~~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~~ 311 (313)
+..++..|+++ .......++.+++.+|...++...+-.+..+++|++++||++|.
T Consensus 81 ~~~~~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~ 135 (153)
T PF03151_consen 81 IFLLILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITP 135 (153)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCH
Confidence 44555556544 34555688899999999999999999999999999999999885
No 46
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.23 E-value=5.2e-05 Score=68.51 Aligned_cols=132 Identities=21% Similarity=0.207 Sum_probs=104.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHHH-
Q 021354 10 ALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVA-YSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG- 87 (313)
Q Consensus 10 ~~~~l~l~~~~~~~g~~~~~~K~~l~~~~~p~~~~~-~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~- 87 (313)
..+.++.+.+.+.|+...+..|... ..++..... +.+..+.....+.... +++ . ....+++......|+++
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~--~~~~~~~~~~~~~g~~~~ 225 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLFFLS--GFG-A--PILSRAWLLLLYLGVFST 225 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHHhc--ccc-c--cCCHHHHHHHHHHHHHHH
Confidence 4678889999999999999999764 467777777 5555333333333222 121 1 24567777888888888
Q ss_pred HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHh
Q 021354 88 VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV 154 (313)
Q Consensus 88 ~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~ 154 (313)
...+.+++.+++..+++.++.+.++.|++..++++++++|+++.+ +++|.++.+.|+.+..
T Consensus 226 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~ 286 (292)
T COG0697 226 GLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLAS 286 (292)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHh
Confidence 469999999999999999999999999999999999999999999 9999999999987655
No 47
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.23 E-value=2.4e-05 Score=71.97 Aligned_cols=129 Identities=15% Similarity=0.040 Sum_probs=98.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH---HHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHH
Q 021354 10 ALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYP---LATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFI 86 (313)
Q Consensus 10 ~~~~l~l~~~~~~~g~~~~~~K~~l~~~~~p~~~~~~R~~---~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 86 (313)
++++...+++.+.++......|.. +.||...++.... +++.++.+.. .+ + + +. ..+........|++
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~-~~-~---~-~~-~~~~~~~~~~~Gi~ 220 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH-IL-A---K-PL-KKYAILLNILPGLM 220 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH-hc-c---c-ch-HHHHHHHHHHHHHH
Confidence 679999999999999999999974 3799988555554 4444333322 12 1 1 21 22333344457777
Q ss_pred HHHHHHHHHHHhh-ccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccch----hhHHHHHHhHHHHh
Q 021354 87 GVLSQIFGYTGIA-CSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKI----IGTMVSISGALVVV 154 (313)
Q Consensus 87 ~~~~~~~~~~gl~-~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~----~gi~l~~~G~~ll~ 154 (313)
-...+.+++.+.+ +.+++.++.+.+..|+...+.++++++|+.+++ ++ +|.++.+.|+.++.
T Consensus 221 ~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~------~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 221 WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKR------EMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcc------eeehhHHHHHHHHHHHHHHh
Confidence 6677888999999 999999999999999999999999999999999 88 99999999887654
No 48
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.22 E-value=6.5e-06 Score=64.73 Aligned_cols=66 Identities=15% Similarity=0.147 Sum_probs=59.8
Q ss_pred HHHHH-HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHh
Q 021354 83 LSFIG-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV 154 (313)
Q Consensus 83 ~g~~~-~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~ 154 (313)
.++.+ ...+.++..+++..|.+.+-.+.++.|+++.+++++++|||++++ |++|+++.++|+.++.
T Consensus 42 ~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 42 LALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 34354 678899999999999999999999999999999999999999999 9999999999998765
No 49
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.01 E-value=0.0016 Score=59.16 Aligned_cols=240 Identities=15% Similarity=0.152 Sum_probs=160.0
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhcc--hhhHH
Q 021354 39 SYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISN--LTPAF 116 (313)
Q Consensus 39 ~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~t~a~~as~i~~--~~P~~ 116 (313)
+|..+.+..-..+.++-..+.. .++.. ...+.-+......++.+.....+.+.+++|.+=-...+==. +.|+
T Consensus 50 ~~~fL~~~q~l~~~~~s~~~l~---~~k~~--~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPV- 123 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSYAMLK---WWKKE--LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPV- 123 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHHh---ccccc--CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHH-
Confidence 4566666666666655443322 22222 12234456677888888889999999999997322222112 4554
Q ss_pred HHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhhhcCCccccCCCCCCCCCCCccccccCCCCCCchhhHHHHHH
Q 021354 117 TFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLA 196 (313)
Q Consensus 117 ~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l 196 (313)
.+.+.++.+.|.+.+ +..-.++.-.|+.+....+..+ + + +...+.+...|..++.
T Consensus 124 -mlmg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~--------s------~----~~~g~~ns~~G~~Ll~ 178 (327)
T KOG1581|consen 124 -MLMGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSD--------S------S----SKSGRENSPIGILLLF 178 (327)
T ss_pred -HHHHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCC--------C------c----cccCCCCchHhHHHHH
Confidence 677888898888888 7777777678876655421111 0 0 0112345578999988
Q ss_pred HHHHHHHHHHHHHHHHHhhcC-hhHHHHHHHHHHHHHHHHHHHhhcCCCCc--cc-cccChhhHHHHHHHHhhhhHHHHH
Q 021354 197 AQCFLLSIWSILLTQIINIYP-AELLVAFLYNLFAAVIAVPLCLFAEPDLS--LW-RLKPDVALVSIVYSAFLGPSFNTI 272 (313)
Q Consensus 197 ~aa~~~a~~~v~~k~~~~~~~-~~~~~t~~~~l~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~ll~lgv~~s~~~~~ 272 (313)
..-..=+.-+..|+++.++.. ++..++++.++++++.-.......+...+ .+ ..+ ++.+..++..+. +.+++..
T Consensus 179 ~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~h-p~~~~Di~l~s~-~gavGQ~ 256 (327)
T KOG1581|consen 179 GYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEH-PDVAFDILLYST-CGAVGQL 256 (327)
T ss_pred HHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcC-hhHHHHHHHHHH-hhhhhhh
Confidence 888888888888999877543 35788899999998887776433222111 11 222 345666665665 4456666
Q ss_pred HHHHHhhccCceeeecccchHHHHHHHHHHHHhcCcccc
Q 021354 273 IHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 311 (313)
Q Consensus 273 l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~~ 311 (313)
..++-+++-|+-.-+.++..-=++++.++.+++|.++++
T Consensus 257 FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~ 295 (327)
T KOG1581|consen 257 FIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSS 295 (327)
T ss_pred eehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccch
Confidence 777889999999999999999999999999999998865
No 50
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.88 E-value=0.00037 Score=64.42 Aligned_cols=117 Identities=19% Similarity=0.240 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHHH-
Q 021354 9 EALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG- 87 (313)
Q Consensus 9 ~~~~~l~l~~~~~~~g~~~~~~K~~l~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~- 87 (313)
..-+....+.+++.-+.+..+.|.+..+. +. .. .+ +++.. ++. .+ ...++.|+.-
T Consensus 5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~-~~---~~---------------~~-~~~~~-~~~-l~--~~~W~~G~~~~ 60 (300)
T PF05653_consen 5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRL-PR---GS---------------LR-AGSGG-RSY-LR--RPLWWIGLLLM 60 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hc---cc---------------cc-ccchh-hHH-Hh--hHHHHHHHHHH
Confidence 35567778888888999999999875431 10 00 00 00000 001 11 1234556554
Q ss_pred HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhh
Q 021354 88 VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL 155 (313)
Q Consensus 88 ~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~ 155 (313)
......-+.++.+.|++..+-+..+.-++..+++..+.+||++++ .+.|+++++.|..++..
T Consensus 61 ~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 61 VLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVI 122 (300)
T ss_pred hcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEE
Confidence 566778889999999999998888888999999999999999999 99999999999987765
No 51
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.86 E-value=0.00029 Score=56.89 Aligned_cols=117 Identities=20% Similarity=0.213 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHHH-HHH
Q 021354 12 LLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-VLS 90 (313)
Q Consensus 12 ~~l~l~~~~~~~g~~~~~~K~~l~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~ 90 (313)
+++..+...++=+....+.|.++++ .++...... . ...+ .. .. + | . .....|+.. .+.
T Consensus 3 ~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~~-~-~~~~----~~-~~-~-----p---~----~~i~lgl~~~~la 61 (129)
T PRK02971 3 GYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAWD-F-IAAL----LA-FG-L-----A---L----RAVLLGLAGYALS 61 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchhH-H-HHHH----HH-Hh-c-----c---H----HHHHHHHHHHHHH
Confidence 4666777777778888999999764 444332221 1 1110 00 11 0 1 0 134567776 788
Q ss_pred HHHHHHHhhccCchhhhhhcchhhHHHHHHHHH--HhhhcccccccccccchhhHHHHHHhHHHHhh
Q 021354 91 QIFGYTGIACSSPTLSSAISNLTPAFTFTLAVL--FRMEKLALRTLSTQAKIIGTMVSISGALVVVL 155 (313)
Q Consensus 91 ~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~--~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~ 155 (313)
+.++..+++..+++.+.-+.+..+..+.+.++. +++|+++++ |++|+++.++|++++..
T Consensus 62 ~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~~ 122 (129)
T PRK02971 62 MLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLINL 122 (129)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhcc
Confidence 999999999999999999999988888888875 799999999 99999999999987653
No 52
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=97.82 E-value=0.0005 Score=61.67 Aligned_cols=192 Identities=16% Similarity=0.131 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHHHHHHhhhhhhcCCCccC---C---------CccHHHHHHHHHH
Q 021354 23 TVGLNTLFKAAAS---KGL----SYYVFVAYSYPLATLALLPLPLIFRNTTTVV---P---------SFKFSILSRIILL 83 (313)
Q Consensus 23 ~g~~~~~~K~~l~---~~~----~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~---~---------~~~~~~~~~~~~~ 83 (313)
=+.|-+++|.+=+ .+- +|+..+-.-|+.=++++..+.+++ .|...+ . +.+.+-. ..+.-
T Consensus 15 Gs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir-~~sn~~g~~s~~~~ilsq~~~pf~p~-lfl~P 92 (372)
T KOG3912|consen 15 GSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIR-LRSNGQGVSSDLDSILSQDSSPFNPV-LFLPP 92 (372)
T ss_pred ccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCcccccccccccccCCCCcc-eecCh
Confidence 3456677887522 122 366666666666667777766654 221110 0 0011111 12235
Q ss_pred HHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhhhcCCcccc
Q 021354 84 SFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFL 163 (313)
Q Consensus 84 g~~~~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~~~g~~~~~ 163 (313)
+++......+.+.|+.+|+|+.---+=...-+|+.+++.-+++.++..+ ||.|+.....|+..+.. .. ..
T Consensus 93 al~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~-~d--~~- 162 (372)
T KOG3912|consen 93 ALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGS-LD--VH- 162 (372)
T ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeee-ee--cc-
Confidence 5666777888899999999764444444556788999999999999999 99999999999876543 11 10
Q ss_pred CCCCCCCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHh-hcChhHHHHHHHHHHHHHHHHHHHh
Q 021354 164 GTSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLTQIIN-IYPAELLVAFLYNLFAAVIAVPLCL 239 (313)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~-~~~~~~~~t~~~~l~~~~~~~~~~~ 239 (313)
.++|++ +.-++...|+++.+.+-+.-|...+.-.|..+ ...+|.....|+.++|.+.+...+.
T Consensus 163 -~~~~p~------------~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i 226 (372)
T KOG3912|consen 163 -LVTDPY------------TDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAI 226 (372)
T ss_pred -cccCCc------------cccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHH
Confidence 111111 11234578999999999999999998666544 4446899999999999766665553
No 53
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.82 E-value=0.012 Score=55.30 Aligned_cols=278 Identities=13% Similarity=0.065 Sum_probs=151.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhh--hhcCCCcc--CCCccHHHHHHHHHHH
Q 021354 9 EALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPL--IFRNTTTV--VPSFKFSILSRIILLS 84 (313)
Q Consensus 9 ~~~~~l~l~~~~~~~g~~~~~~K~~l~~~~~p~~~~~~R~~~a~~~l~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~g 84 (313)
-..+++..++++++||++++-.|.. + +-+ ++.-+.-..+-.-++.|+.. .. .+... ....+.+.+...++.|
T Consensus 5 ~~~G~~~~~i~~~~~GS~~~p~K~~-k-~w~-wE~~W~v~gi~~wl~~~~~~g~~~-~~~f~~~~~~~~~~~~~~~~l~G 80 (345)
T PRK13499 5 IILGIIWHLIGGASSGSFYAPFKKV-K-KWS-WETMWSVGGIFSWLILPWLIAALL-LPDFWAYYSSFSGSTLLPVFLFG 80 (345)
T ss_pred hHHHHHHHHHHHHHhhccccccccc-C-CCc-hhHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHhcCHHHHHHHHHHH
Confidence 3557888999999999999999984 3 233 22222211111112222111 10 11000 0113344455555556
Q ss_pred HHHHHHHHHHHHHhhccCchhhhhhc-chhhHHHHHHHHHHhhhcc---cccccccccchhhHHHHHHhHHHHhhhcCCc
Q 021354 85 FIGVLSQIFGYTGIACSSPTLSSAIS-NLTPAFTFTLAVLFRMEKL---ALRTLSTQAKIIGTMVSISGALVVVLYKGPT 160 (313)
Q Consensus 85 ~~~~~~~~~~~~gl~~t~a~~as~i~-~~~P~~~~ll~~~~~~E~~---~~~~~~s~~~~~gi~l~~~G~~ll~~~~g~~ 160 (313)
++=...+..++.++++...+.+.-+. .++-+...++..++++|-- +.+ ......+|+++.++|+.+... .+..
T Consensus 81 ~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~--~g~~~~~gv~liliGi~l~s~-Ag~~ 157 (345)
T PRK13499 81 ALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATN--GGRMTLLGVLVALIGVAIVGR-AGQL 157 (345)
T ss_pred HHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccc--hHHHHHHHHHHHHHHHHHHHH-hhhh
Confidence 66577899999999999988887664 4778888888888888743 221 122258889999999887664 1100
Q ss_pred cccCCCCCCCCCCCccccccCC-CCCCchhhHHHHHHHHHHHHHHHH-------HHHHHHH-hhcChhHHHHHHH---HH
Q 021354 161 IFLGTSPSSTHSTNSLHWLMGS-PSVSNWVTGGFLLAAQCFLLSIWS-------ILLTQII-NIYPAELLVAFLY---NL 228 (313)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~G~ll~l~aa~~~a~~~-------v~~k~~~-~~~~~~~~~t~~~---~l 228 (313)
- ++ +. . ++ ..+++...|...++++.+.+++|. ...+... .+.+ +.....-+ ++
T Consensus 158 k----~~-~~-----~----~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~-~~~~~lp~~~~~~ 222 (345)
T PRK13499 158 K----ER-KM-----G----IKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVD-PLYAALPSYVVIM 222 (345)
T ss_pred c----cc-cc-----c----cccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCC-chHHHHHHHHHHH
Confidence 0 00 00 0 00 124566789999999999999999 4333211 1222 22222222 33
Q ss_pred HHHHHHHHHH-hh---cCCCC---ccccccChhhHHHH---HHHHhhhhHHHHHHHHHHhhccCceeee----cccchHH
Q 021354 229 FAAVIAVPLC-LF---AEPDL---SLWRLKPDVALVSI---VYSAFLGPSFNTIIHTWGLRLKGPVYIA----IFKPLSV 294 (313)
Q Consensus 229 ~~~~~~~~~~-~~---~~~~~---~~~~~~~~~~~~~l---l~lgv~~s~~~~~l~~~~l~~~~~~~vs----~~~~l~P 294 (313)
.|++...... .. .+++. .+...+-+..+-.. +..|+ .=.+++..|..+-++.|..... +.+-+.-
T Consensus 223 ~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~-~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~V 301 (345)
T PRK13499 223 GGGAITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGV-MWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYV 301 (345)
T ss_pred HHHHHHHHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCccchHHHHHhccHHH
Confidence 5555444322 21 12221 11111100001121 12222 2245666777777777665433 3336666
Q ss_pred HHHHHHHHHHhcCccc
Q 021354 295 VIAAITGIIFLGDTLH 310 (313)
Q Consensus 295 v~a~l~~~~~l~E~l~ 310 (313)
+++.+.|.+ ++|+=+
T Consensus 302 iistlwGi~-lkE~K~ 316 (345)
T PRK13499 302 LCGNLWGLV-LKEWKG 316 (345)
T ss_pred HHHHHhhhh-hhhccC
Confidence 999999994 999754
No 54
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.00022 Score=63.75 Aligned_cols=240 Identities=13% Similarity=0.137 Sum_probs=140.5
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhhhcCCC--cc-CCC--ccHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhcchh
Q 021354 39 SYYVFVAYSYPLATLALLPLPLIFRNTT--TV-VPS--FKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLT 113 (313)
Q Consensus 39 ~p~~~~~~R~~~a~~~l~~~~~~~~~~~--~~-~~~--~~~~~~~~~~~~g~~~~~~~~~~~~gl~~t~a~~as~i~~~~ 113 (313)
.|..+.++..+....+.+.+.... .+. .. .++ ++.+.-++..-+.+...+.-.+=..-++|.+.+.=-+==.++
T Consensus 60 ~plf~t~~qcLvt~~~c~~ls~ls-~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLt 138 (347)
T KOG1442|consen 60 APLFITWYQCLVTTSICLVLSSLS-VKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLT 138 (347)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH-hhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchh
Confidence 578889999988876655544322 111 10 011 222333333333333221222222345555543222222367
Q ss_pred hHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhhhcCCccccCCCCCCCCCCCccccccCCCCCCchhhHHH
Q 021354 114 PAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSPSVSNWVTGGF 193 (313)
Q Consensus 114 P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l 193 (313)
-+|+.++.++++|+|-+.. -. +.+|++++.++-|.+.+ +..+.-...|.+
T Consensus 139 tvFtVlLtyvllkqkTs~~------~~-----~~C~lIi~GF~lGvdqE-------------------~~~~~ls~~Gvi 188 (347)
T KOG1442|consen 139 TVFTVLLTYVLLKQKTSFF------AL-----GCCLLIILGFGLGVDQE-------------------GSTGTLSWIGVI 188 (347)
T ss_pred hhHHHHhHHhhcccccccc------cc-----eeehhheehheeccccc-------------------cccCccchhhhH
Confidence 7899999999999998766 22 22333333333333221 111222358999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC-hhHHHHHHHHHHHHHHHHHHHhhcCCCCc--cccccC-hhhHHHHHHHHhhhhHH
Q 021354 194 LLAAQCFLLSIWSILLTQIINIYP-AELLVAFLYNLFAAVIAVPLCLFAEPDLS--LWRLKP-DVALVSIVYSAFLGPSF 269 (313)
Q Consensus 194 l~l~aa~~~a~~~v~~k~~~~~~~-~~~~~t~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~ll~lgv~~s~~ 269 (313)
+...++++-|...+..|+...... .-+..+++.++.+.+.++|...+.++-.. .++..+ ...|..+...|+++-.+
T Consensus 189 fGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~m 268 (347)
T KOG1442|consen 189 FGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAM 268 (347)
T ss_pred HHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHh
Confidence 999999999999999997654433 24789999999999999998766543111 222222 23345555666655555
Q ss_pred HHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCccc
Q 021354 270 NTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLH 310 (313)
Q Consensus 270 ~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~ 310 (313)
+|. -.|=+|-.+|..=.+...---..=.+++..+++|.-+
T Consensus 269 gyv-Tg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks 308 (347)
T KOG1442|consen 269 GYV-TGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKS 308 (347)
T ss_pred hhe-eeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhh
Confidence 544 4455677777776666666666777788888888654
No 55
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=97.74 E-value=0.00012 Score=62.45 Aligned_cols=98 Identities=17% Similarity=0.255 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhhhcCCccccCCCC
Q 021354 88 VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSP 167 (313)
Q Consensus 88 ~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~~~g~~~~~~~~~ 167 (313)
.+.++.+..+++..+++.++.+..+...|+.+++++++++|+.-- |+++.++++.|++++.+.+.
T Consensus 64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~------kIlaailAI~GiVmiay~DN--------- 128 (290)
T KOG4314|consen 64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGF------KILAAILAIGGIVMIAYADN--------- 128 (290)
T ss_pred ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhh------hHHHHHHHhCcEEEEEeccc---------
Confidence 457889999999999999999999999999999999999999888 99999999999887774111
Q ss_pred CCCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021354 168 SSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLTQIINIY 216 (313)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~ 216 (313)
.+.+...|..++..|++.-|+|-+..|+...+-
T Consensus 129 ----------------~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnA 161 (290)
T KOG4314|consen 129 ----------------EHADEIIGIACAVGSAFMAALYKVLFKMFIGNA 161 (290)
T ss_pred ----------------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 233446999999999999999999999987553
No 56
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.65 E-value=0.00043 Score=60.14 Aligned_cols=204 Identities=13% Similarity=0.208 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhhhcCCc
Q 021354 81 ILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPT 160 (313)
Q Consensus 81 ~~~g~~~~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~~~g~~ 160 (313)
+..+++-...-+.--.+++|.+...=+++-+++-+.++....++|+.|++-. ....-.+.+...++-.. ++.
T Consensus 72 fpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl------~l~SFilMvlSS~va~w--~D~ 143 (309)
T COG5070 72 FPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSL------ELLSFILMVLSSVVATW--GDQ 143 (309)
T ss_pred cCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchh------hHHHHHHHHHHHHHhcc--chh
Confidence 3444444333444457889999888889999998899999999999998776 66666665555443111 100
Q ss_pred cccCCCCCCCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHh--hcChhHHHHHHHHHHHHHHHHHHH
Q 021354 161 IFLGTSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLTQIIN--IYPAELLVAFLYNLFAAVIAVPLC 238 (313)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~--~~~~~~~~t~~~~l~~~~~~~~~~ 238 (313)
. . . ........-|.+++...+++-+.|.+..|+..+ +..+ ...++|..+.+..+++.+.
T Consensus 144 q-----------~--~-----~~~~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d-~dtmfYnNllslPiL~~~s 204 (309)
T COG5070 144 Q-----------A--S-----AFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKD-FDTMFYNNLLSLPILLSFS 204 (309)
T ss_pred h-----------H--H-----HHHhcccCCceEEEehhhHhHHHHHHHHHHhhcccccch-hhHHHHhhhHHHHHHHHHH
Confidence 0 0 0 001123357899999999999999999998653 3334 6778999999999999888
Q ss_pred hhcCC-CCccccc-cChhhHHHHHHHHhhhhHHHHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCccccC
Q 021354 239 LFAEP-DLSLWRL-KPDVALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHLG 312 (313)
Q Consensus 239 ~~~~~-~~~~~~~-~~~~~~~~ll~lgv~~s~~~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~~~ 312 (313)
.++|+ ++.+... .+++....+...|+.+.++.|. -.|+.+-.+.+.-|.+..+.-.-..+-|.+++||+.+-.
T Consensus 205 ~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~-saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~ 279 (309)
T COG5070 205 FLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYC-SAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFL 279 (309)
T ss_pred HHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhc-cceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHH
Confidence 87764 2322111 1223445666677766666666 789999999999999999998889999999999998754
No 57
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=97.57 E-value=0.00061 Score=59.99 Aligned_cols=183 Identities=14% Similarity=0.097 Sum_probs=104.9
Q ss_pred hhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhhh-----------cCCccccCCCCCCCCCCCc
Q 021354 107 SAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLY-----------KGPTIFLGTSPSSTHSTNS 175 (313)
Q Consensus 107 s~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~~-----------~g~~~~~~~~~~~~~~~~~ 175 (313)
...-+..|+++.+..+...+||.... |++++++...|++.-... .+..... .++ + . +
T Consensus 8 ~~~~s~~l~~v~l~~~~~~~~~~~~~------~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~-~~~-~---~-~ 75 (222)
T TIGR00803 8 IIFKQNNLVLIALGNLLAAGKQVTQL------KILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQ-MVQ-S---S-A 75 (222)
T ss_pred HHHHhcchHHHHHhcccccceeeehH------HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeee-cCC-C---C-c
Confidence 44556778888888888888888766 899999888887642210 0100000 000 0 0 0
Q ss_pred cccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHH-HHHHHHHHHHHHHHHHhhcCCCC-cccc---c
Q 021354 176 LHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLTQIINIYPAELLV-AFLYNLFAAVIAVPLCLFAEPDL-SLWR---L 250 (313)
Q Consensus 176 ~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~-t~~~~l~~~~~~~~~~~~~~~~~-~~~~---~ 250 (313)
+ .....+...|....+.++++-+.-.+.+++..|+.+...-. .....+++.+.........+.+. ..+. .
T Consensus 76 ~-----~~~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (222)
T TIGR00803 76 K-----TLMFGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIG 150 (222)
T ss_pred c-----ccccccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccC
Confidence 0 00112345777788888888888888888765543211111 11112222222111111111111 1111 1
Q ss_pred cChhhHHHHHHHHhhhhHHHHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCcccc
Q 021354 251 KPDVALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 311 (313)
Q Consensus 251 ~~~~~~~~ll~lgv~~s~~~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~~ 311 (313)
.+.. .+.+ ++..+++..+..+.+|+.++...+....++++++.+++++++||+++.
T Consensus 151 ~~~~-~~~~----~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~ 206 (222)
T TIGR00803 151 YPTA-VWIV----GLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISS 206 (222)
T ss_pred CchH-HHHH----HHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccH
Confidence 1111 1222 233455666788999999999999999999999999999999999985
No 58
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.39 E-value=0.0029 Score=59.18 Aligned_cols=139 Identities=12% Similarity=-0.006 Sum_probs=101.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCc--cHHHHHHHHHHHH
Q 021354 8 REALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSF--KFSILSRIILLSF 85 (313)
Q Consensus 8 ~~~~~~l~l~~~~~~~g~~~~~~K~~l~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~ 85 (313)
++.++=+..+.+++++|.+.+..|...+ +.|+.++...=-+++.++..+..... |++.. .+. +.+.......-++
T Consensus 165 ~~i~GDll~l~~a~lya~~nV~~E~~v~-~~~~~~~lg~~Glfg~ii~~iq~~il-e~~~i-~~~~w~~~~~~~~v~~~~ 241 (334)
T PF06027_consen 165 NPILGDLLALLGAILYAVSNVLEEKLVK-KAPRVEFLGMLGLFGFIISGIQLAIL-ERSGI-ESIHWTSQVIGLLVGYAL 241 (334)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhcc-cCCHHHHHHHHHHHHHHHHHHHHHhe-ehhhh-hccCCChhhHHHHHHHHH
Confidence 4566677889999999999999999876 47988888777777888877776665 54333 222 3232222222222
Q ss_pred HHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhh
Q 021354 86 IGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL 155 (313)
Q Consensus 86 ~~~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~ 155 (313)
..+....+.-..+++++|+...+-.-+..++..++++++++|++++. .++|.++.++|.++...
T Consensus 242 ~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~~ 305 (334)
T PF06027_consen 242 CLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYNL 305 (334)
T ss_pred HHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEEc
Confidence 22445556667788999887777666788899999999999999998 89999999999876554
No 59
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=97.36 E-value=0.00041 Score=54.52 Aligned_cols=55 Identities=16% Similarity=0.313 Sum_probs=47.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCcccc
Q 021354 256 LVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 311 (313)
Q Consensus 256 ~~~ll~lgv~~s~~~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~~ 311 (313)
+...+..|++....++.++.+++++.++ .++....+.|++++++++++++|+++.
T Consensus 34 ~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~ 88 (113)
T PF13536_consen 34 WLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSP 88 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4445556676666899999999999995 888999999999999999999999875
No 60
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.25 E-value=0.0023 Score=51.58 Aligned_cols=102 Identities=19% Similarity=0.180 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhhcCCCCccccccChhhHHHHHHHHhhhhHH
Q 021354 190 TGGFLLAAQCFLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEPDLSLWRLKPDVALVSIVYSAFLGPSF 269 (313)
Q Consensus 190 ~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~s~~ 269 (313)
.|.++.+.+.++-+...+..|+-.++.++ ...... . . ..... ..+ ....+++|+.+.++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~-~~~~~~-~----~-~~~~~-~~~-------------p~~~i~lgl~~~~l 60 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPL-LSHAWD-F----I-AALLA-FGL-------------ALRAVLLGLAGYAL 60 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccchhH-H----H-HHHHH-Hhc-------------cHHHHHHHHHHHHH
Confidence 36788899999999999999987766543 221111 0 0 00000 000 12246788999999
Q ss_pred HHHHHHHHhhccCceeeecccchHHHHHHHHHHH--HhcCccccC
Q 021354 270 NTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGII--FLGDTLHLG 312 (313)
Q Consensus 270 ~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~--~l~E~l~~~ 312 (313)
++.+|.+++++.+++.+..+..+.++...+.++. ++||++|+.
T Consensus 61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~ 105 (129)
T PRK02971 61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK 105 (129)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 9999999999999999999999999888888885 899999863
No 61
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.14 E-value=0.0092 Score=55.12 Aligned_cols=138 Identities=17% Similarity=0.162 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHhhhhh--hcCCCccCC--CccHHHHHHHHHHHHH
Q 021354 12 LLSATVAVECTTVGLNTLFKAAAS-KGLSYYVFVAYSYPLATLALLPLPLI--FRNTTTVVP--SFKFSILSRIILLSFI 86 (313)
Q Consensus 12 ~~l~l~~~~~~~g~~~~~~K~~l~-~~~~p~~~~~~R~~~a~~~l~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~g~~ 86 (313)
++++++++.++-|......+...+ ++.++.+.+++-...+.++..+.... .++-....+ ....+.+..++..++.
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~ 234 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT 234 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 788999999999999999988774 46899999999999998887776665 201110000 0111234455666677
Q ss_pred HHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhh
Q 021354 87 GVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL 155 (313)
Q Consensus 87 ~~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~ 155 (313)
+...+.+.+.-.+..++...+++..+--+++.+++.++++++++.. +|+|+++.+.|..+=..
T Consensus 235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~------~~~G~~lv~~g~~~~~~ 297 (303)
T PF08449_consen 235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPL------QWIGIVLVFAGIFLYSY 297 (303)
T ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChH------HHHHHHHhHHHHHHHHH
Confidence 7777777778889999999999999999999999999999999999 99999999999876443
No 62
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=97.11 E-value=0.009 Score=53.07 Aligned_cols=129 Identities=16% Similarity=0.118 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHHH-HH
Q 021354 11 LLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-VL 89 (313)
Q Consensus 11 ~~~l~l~~~~~~~g~~~~~~K~~l~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~ 89 (313)
.+..+.+.+..+|...-+..|.+-+ ..+--.-+..-+.+++++.+|+-.-. .. . --.....+...+..|++. .+
T Consensus 148 ~Gv~~Al~AG~~Wa~YIv~G~r~g~-~~~g~~g~a~gm~vAaviv~Pig~~~-ag-~--~l~~p~ll~laLgvavlSSal 222 (292)
T COG5006 148 VGVALALGAGACWALYIVLGQRAGR-AEHGTAGVAVGMLVAALIVLPIGAAQ-AG-P--ALFSPSLLPLALGVAVLSSAL 222 (292)
T ss_pred HHHHHHHHHhHHHHHHHHHcchhcc-cCCCchHHHHHHHHHHHHHhhhhhhh-cc-h--hhcChHHHHHHHHHHHHhccc
Confidence 3456677888999999999887643 35667778889999999999987543 11 1 113345566677778888 78
Q ss_pred HHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhH
Q 021354 90 SQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGA 150 (313)
Q Consensus 90 ~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~ 150 (313)
.+.+-..+++..|...-+++.++.|.+.++.++++++|+++.. ||.++...+.+.
T Consensus 223 PYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~------qwlaI~~ViaAs 277 (292)
T COG5006 223 PYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLI------QWLAIAAVIAAS 277 (292)
T ss_pred chHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 999998876654
No 63
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.83 E-value=0.015 Score=45.44 Aligned_cols=60 Identities=12% Similarity=0.124 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhhccCchhhhhhc-chhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHH
Q 021354 88 VLSQIFGYTGIACSSPTLSSAIS-NLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVV 153 (313)
Q Consensus 88 ~~~~~~~~~gl~~t~a~~as~i~-~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll 153 (313)
...+.+...++++.|.+.+=.+. ..--+.+.+.++++++|++++. |++|+.+.+.|++.+
T Consensus 46 ~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l 106 (109)
T PRK10650 46 LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence 66888889999999988775544 4677888999999999999999 999999999998764
No 64
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=96.68 E-value=0.0043 Score=48.66 Aligned_cols=49 Identities=6% Similarity=-0.006 Sum_probs=44.6
Q ss_pred hhhhHHHHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCccccC
Q 021354 264 FLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHLG 312 (313)
Q Consensus 264 v~~s~~~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~~~ 312 (313)
+.+-++++.++.+++++.+.+.+....++.++++++.|++++||++|+.
T Consensus 44 ~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~ 92 (111)
T PRK15051 44 LACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR 92 (111)
T ss_pred HHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 3556789999999999999999999999999999999999999999863
No 65
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=96.65 E-value=0.013 Score=53.14 Aligned_cols=120 Identities=14% Similarity=0.197 Sum_probs=91.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhhcCCCCcccc-ccChhhHHHHHHHHhhhh
Q 021354 189 VTGGFLLAAQCFLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEPDLSLWR-LKPDVALVSIVYSAFLGP 267 (313)
Q Consensus 189 ~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~lgv~~s 267 (313)
..|.++.+.+-+.|+.--...|- .++.+ +.++...-.+.+...++...........-++ ...+..+..+...++. -
T Consensus 6 ~~Gil~~l~Ay~lwG~lp~y~kl-l~~~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l-i 82 (293)
T COG2962 6 RKGILLALLAYLLWGLLPLYFKL-LEPLP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL-I 82 (293)
T ss_pred cchhHHHHHHHHHHHHHHHHHHH-HccCC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH-H
Confidence 47899999999999998888775 45655 5788888888888877776655432211111 2223445555555554 3
Q ss_pred HHHHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCcccc
Q 021354 268 SFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 311 (313)
Q Consensus 268 ~~~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~~ 311 (313)
.....+|.|+.++.....+|+=.++.|++.++.|.++++|+++.
T Consensus 83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~ 126 (293)
T COG2962 83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSR 126 (293)
T ss_pred HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccH
Confidence 56899999999999999999999999999999999999999874
No 66
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.54 E-value=0.0086 Score=55.54 Aligned_cols=140 Identities=14% Similarity=0.172 Sum_probs=105.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHH-hhhhhhcCCCc----cCCCccHHHHHH
Q 021354 8 REALLLSATVAVECTTVGLNTLFKAAAS---KGLSYYVFVAYSYPLATLALL-PLPLIFRNTTT----VVPSFKFSILSR 79 (313)
Q Consensus 8 ~~~~~~l~l~~~~~~~g~~~~~~K~~l~---~~~~p~~~~~~R~~~a~~~l~-~~~~~~~~~~~----~~~~~~~~~~~~ 79 (313)
-++.+.....++.+....-.++.|..+. ..+++..+..+--.++.+.++ |+.... +... .....+.+ ...
T Consensus 160 fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~-~~~~~~~~~~~~~~~~-~~~ 237 (316)
T KOG1441|consen 160 FNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYV-EGNKFVGFLTAPWFVT-FLI 237 (316)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhh-cccceeeeeccccchh-hHH
Confidence 3567788888999999999999999883 359999999999999999999 876654 3211 10123333 333
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhh
Q 021354 80 IILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL 155 (313)
Q Consensus 80 ~~~~g~~~~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~ 155 (313)
....+++..+.+...|+-+..++|-.=++....==.++.+.++++|+|+++.. +..|..++++|+.+-..
T Consensus 238 ~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~------n~~G~~iai~Gv~~Y~~ 307 (316)
T KOG1441|consen 238 LLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFL------NALGYAIAILGVFLYSR 307 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchh------hHHHHHHHHHHHHHHHH
Confidence 44445666778888999999999877777666555566777889999999999 99999999999876443
No 67
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.52 E-value=0.0087 Score=46.25 Aligned_cols=61 Identities=21% Similarity=0.181 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhhccCchhhhhh-cchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHh
Q 021354 88 VLSQIFGYTGIACSSPTLSSAI-SNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV 154 (313)
Q Consensus 88 ~~~~~~~~~gl~~t~a~~as~i-~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~ 154 (313)
...+.+...++++.|.+.|=.+ ...--+.+.+.++++|+|+++.. |++|+.+.++|++.+-
T Consensus 41 ~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 41 GLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGLK 102 (106)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHhh
Confidence 6788899999999998877544 44677888999999999999999 9999999999987654
No 68
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=96.52 E-value=0.0099 Score=47.26 Aligned_cols=62 Identities=24% Similarity=0.247 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhhccCchhhhhhc-chhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhh
Q 021354 88 VLSQIFGYTGIACSSPTLSSAIS-NLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL 155 (313)
Q Consensus 88 ~~~~~~~~~gl~~t~a~~as~i~-~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~ 155 (313)
...+.++..++++.|.+.|=.+. ..--+.+.++++++++|++++. |++|+.+.++|++.+-.
T Consensus 41 ~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 41 SLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhhc
Confidence 67888999999999988776654 5777888999999999999999 99999999999987653
No 69
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.36 E-value=0.017 Score=45.18 Aligned_cols=62 Identities=27% Similarity=0.250 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhhccCchhhhhh-cchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhh
Q 021354 88 VLSQIFGYTGIACSSPTLSSAI-SNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL 155 (313)
Q Consensus 88 ~~~~~~~~~gl~~t~a~~as~i-~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~ 155 (313)
...+.++..+++..|.+.|=.+ ...--+.+.++++++++|++++. |++|+.+.++|++.+-.
T Consensus 41 ~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 41 CASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 5678888899999998877655 44677788999999999999999 99999999999987653
No 70
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.30 E-value=0.0013 Score=57.98 Aligned_cols=258 Identities=14% Similarity=0.115 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHHHHHHHH
Q 021354 13 LSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQI 92 (313)
Q Consensus 13 ~l~l~~~~~~~g~~~~~~K~~l~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 92 (313)
++..++=++.||+...+...- +=.|.+-.----+.|.++-....++. + |..+.+.+.--++-|.+=...|.
T Consensus 4 ~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GALifaiiv~~~~--~----p~~T~~~~iv~~isG~~Ws~GQ~ 74 (288)
T COG4975 4 LLIALLPALGWGSIPLVANKF---GGKPYQQTLGTTLGALIFAIIVFLFV--S----PELTLTIFIVGFISGAFWSFGQA 74 (288)
T ss_pred HHHHHHHHHHhcccceeeeec---CCChhHhhhhccHHHHHHHHHHheee--c----CccchhhHHHHHHhhhHhhhhhh
Confidence 556677788999988886542 23555444333333333322222222 1 33455544444444444467889
Q ss_pred HHHHHhhccCchhhhhhcc-hhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhhhcCCccccCCCCCCCC
Q 021354 93 FGYTGIACSSPTLSSAISN-LTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTH 171 (313)
Q Consensus 93 ~~~~gl~~t~a~~as~i~~-~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~~~g~~~~~~~~~~~~~ 171 (313)
..+.++++...+.|.-+.+ ++=+-+.+++.+.++|--+.. -..+++...+++.. |.-++...| ++.|
T Consensus 75 ~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~---------~~IlG~iAlilivi--G~~lTs~~~-~~nk 142 (288)
T COG4975 75 NQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPT---------QIILGFIALILIVI--GIYLTSKQD-RNNK 142 (288)
T ss_pred hhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcch---------hHHHHHHHHHHHHH--hheEeeeec-cccc
Confidence 9999999999999997765 677788888999999965444 23333333333332 111111111 0111
Q ss_pred CCCccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhhcCCCCcccccc
Q 021354 172 STNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEPDLSLWRLK 251 (313)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 251 (313)
. .+..++.-.|....+.|.+.|..|.+..+... .+ ......-|. +|-+.....--....+.. .
T Consensus 143 ~---------~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~--v~-g~saiLPqA-iGMv~~ali~~~~~~~~~-~--- 205 (288)
T COG4975 143 E---------EENPSNLKKGIVILLISTLGYVGYVVLFQLFD--VD-GLSAILPQA-IGMVIGALILGFFKMEKR-F--- 205 (288)
T ss_pred c---------ccChHhhhhheeeeeeeccceeeeEeeecccc--cc-chhhhhHHH-HHHHHHHHHHhhcccccc-h---
Confidence 0 11234456899999999999999998765432 21 122222221 222222222111221111 0
Q ss_pred ChhhHHHHHHHHhhhhHHHHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCccc
Q 021354 252 PDVALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLH 310 (313)
Q Consensus 252 ~~~~~~~ll~lgv~~s~~~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~ 310 (313)
....|..+ .-|++ =+++...+..+.++.|.+..=.+.-+.-+++.+=|.++|+|+=|
T Consensus 206 ~K~t~~ni-i~G~~-Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKt 262 (288)
T COG4975 206 NKYTWLNI-IPGLI-WAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKT 262 (288)
T ss_pred HHHHHHHH-hhHHH-HHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCc
Confidence 11122222 12221 23456667777888888877777777888889999999999743
No 71
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.26 E-value=0.021 Score=44.32 Aligned_cols=61 Identities=7% Similarity=0.045 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhhccCchhhhhhc-chhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHh
Q 021354 88 VLSQIFGYTGIACSSPTLSSAIS-NLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV 154 (313)
Q Consensus 88 ~~~~~~~~~gl~~t~a~~as~i~-~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~ 154 (313)
...+.+...+++..|.+.+=.+. ..--+.+.++++++++|++++. |++|+.+.+.|++.+-
T Consensus 40 ~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 40 IVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhhh
Confidence 67888889999999988775554 4777888999999999999999 9999999999987653
No 72
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.20 E-value=0.2 Score=47.17 Aligned_cols=149 Identities=17% Similarity=0.019 Sum_probs=84.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHH-------HHHHHHHhCCCCHHHHHHHHHH---HHHHHHHh-hhh--hhcCCCcc---CC
Q 021354 7 FREALLLSATVAVECTTVGLN-------TLFKAAASKGLSYYVFVAYSYP---LATLALLP-LPL--IFRNTTTV---VP 70 (313)
Q Consensus 7 ~~~~~~~l~l~~~~~~~g~~~-------~~~K~~l~~~~~p~~~~~~R~~---~a~~~l~~-~~~--~~~~~~~~---~~ 70 (313)
.+.+|.++.++++.+..+... +..+.+...+.+|.....-.+. ++.++.-. +.. .+|+++.. .+
T Consensus 170 ~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~ 249 (345)
T PRK13499 170 FNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADF 249 (345)
T ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhc
Confidence 345778888888888888877 6666654556777655555554 44443332 222 12122210 01
Q ss_pred CccHHHHHHH----HHHHHHHHHHHHHHHHHhhccCchhhhh---hcchhhHHHHHHHHHHhhhcccccccccccchhhH
Q 021354 71 SFKFSILSRI----ILLSFIGVLSQIFGYTGIACSSPTLSSA---ISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGT 143 (313)
Q Consensus 71 ~~~~~~~~~~----~~~g~~~~~~~~~~~~gl~~t~a~~as~---i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi 143 (313)
+.+++.+.+- .+-|++-...+.++..|-+..+...+.+ +....++++.-+.-+++||+-+..+|.-+..++|+
T Consensus 250 ~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi~lkE~K~a~~k~~~~l~~G~ 329 (345)
T PRK13499 250 SLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGLVLKEWKGASRRPVRVLSLGC 329 (345)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhhhhhhccCCCccchhHHHHHH
Confidence 1122222333 3333333455667777777665444444 55345544444444469999886566666678999
Q ss_pred HHHHHhHHHHhh
Q 021354 144 MVSISGALVVVL 155 (313)
Q Consensus 144 ~l~~~G~~ll~~ 155 (313)
++-++|+.++..
T Consensus 330 vliI~g~~lig~ 341 (345)
T PRK13499 330 VVIILAANIVGL 341 (345)
T ss_pred HHHHHHHHHHhh
Confidence 999999887664
No 73
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.12 E-value=0.1 Score=47.35 Aligned_cols=116 Identities=11% Similarity=-0.037 Sum_probs=80.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHHH
Q 021354 8 REALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG 87 (313)
Q Consensus 8 ~~~~~~l~l~~~~~~~g~~~~~~K~~l~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 87 (313)
+.++.++.++++.+.+.....+.|.. +++|.....=......+.-..+..+. ++..+ + |...+-.+.|++-
T Consensus 135 ~~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPqaiGm~i~a~i~~~~~-~~~~~----~-k~~~~nil~G~~w 205 (269)
T PF06800_consen 135 NMKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQAIGMLIGAFIFNLFS-KKPFF----E-KKSWKNILTGLIW 205 (269)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHHHHHHHHHHHHHhhcc-ccccc----c-cchHHhhHHHHHH
Confidence 34668889999999999988888873 37887766544332222222222221 11111 1 2233445677777
Q ss_pred HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhccccc
Q 021354 88 VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALR 132 (313)
Q Consensus 88 ~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~ 132 (313)
...+.+++.+.+....+.+=.+..+.+++..+-+.+++||+-++|
T Consensus 206 ~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~k 250 (269)
T PF06800_consen 206 GIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKK 250 (269)
T ss_pred HHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchh
Confidence 778888899999888888888899999999999999999997766
No 74
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.07 E-value=0.016 Score=43.86 Aligned_cols=52 Identities=21% Similarity=0.121 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhccCchhhh-hhcchhhHHHHHHHHHHhhhcccccccccccchhhHHH
Q 021354 88 VLSQIFGYTGIACSSPTLSS-AISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMV 145 (313)
Q Consensus 88 ~~~~~~~~~gl~~t~a~~as-~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l 145 (313)
...+.++..++++.|.+.+= +...+..+.+.+++.++++|+++.+ |++|+.+
T Consensus 40 ~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~------~~~gi~l 92 (93)
T PF00893_consen 40 GLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLS------KWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHhheee
Confidence 66788999999999999884 4456888999999999999999999 9999875
No 75
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.94 E-value=0.045 Score=50.28 Aligned_cols=119 Identities=16% Similarity=0.196 Sum_probs=86.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHH
Q 021354 7 FREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFI 86 (313)
Q Consensus 7 ~~~~~~~l~l~~~~~~~g~~~~~~K~~l~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 86 (313)
.++..+..+.+.+..+.|+++.+-|.++.+ ..... .+. +.... +.. ++ +.++.|++
T Consensus 17 ~d~~~G~~LaissS~~Ig~sfilkKkgl~r-----------~~~~~-------~ra-~~gg~-~yl--~~--~~Ww~G~l 72 (335)
T KOG2922|consen 17 SDNIIGLVLAISSSIFIGSSFILKKKGLKR-----------AGASG-------LRA-GEGGY-GYL--KE--PLWWAGML 72 (335)
T ss_pred cCceeeeeehhhccEEEeeehhhhHHHHHH-----------Hhhhc-------ccc-cCCCc-chh--hh--HHHHHHHH
Confidence 455556677778888899999999987643 11111 111 11111 111 22 34456666
Q ss_pred H-HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhh
Q 021354 87 G-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL 155 (313)
Q Consensus 87 ~-~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~ 155 (313)
- ......=|.+..+.|++..+-+.++.-+..++++..+++||+++. ..+|..+|++|..+++.
T Consensus 73 tm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~iV~ 136 (335)
T KOG2922|consen 73 TMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTIVI 136 (335)
T ss_pred HHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEEEE
Confidence 5 567777778889999999999999999999999999999999999 89999999999888775
No 76
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=95.75 E-value=0.029 Score=44.01 Aligned_cols=108 Identities=17% Similarity=0.191 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHH-HHHHHHHHH
Q 021354 17 VAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFI-GVLSQIFGY 95 (313)
Q Consensus 17 ~~~~~~~g~~~~~~K~~l~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~ 95 (313)
+++.++||...+++|.+-+ +.++-.-.. |..--... ..+ +++. ...+. +-.....|+
T Consensus 2 l~Vg~~WG~Tnpfik~g~~-~~~~~~~~~-~~~~~~~~-----Ll~----------n~~y-----~ipf~lNq~GSv~f~ 59 (113)
T PF10639_consen 2 LLVGILWGCTNPFIKRGSS-GLEKVKASL-QLLQEIKF-----LLL----------NPKY-----IIPFLLNQSGSVLFF 59 (113)
T ss_pred eeehHHhcCchHHHHHHHh-hcCCccchH-HHHHHHHH-----HHH----------hHHH-----HHHHHHHHHHHHHHH
Confidence 4578899999999999865 354433321 32211111 111 1111 12322 356778899
Q ss_pred HHhhccCchhhhhhc-chhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHH
Q 021354 96 TGIACSSPTLSSAIS-NLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALV 152 (313)
Q Consensus 96 ~gl~~t~a~~as~i~-~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~l 152 (313)
..+..++-+.+.-+. ++.=++|++.++++.+|..+++ +++|+.+.+.|+.+
T Consensus 60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVAL 111 (113)
T ss_pred HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeee
Confidence 999999999999886 5677788888888877777777 89999999999764
No 77
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=95.24 E-value=0.012 Score=52.59 Aligned_cols=133 Identities=14% Similarity=0.101 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHHHHHHHH
Q 021354 13 LSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQI 92 (313)
Q Consensus 13 ~l~l~~~~~~~g~~~~~~K~~l~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 92 (313)
..+.+.+.+.-+..+++.|. +.+..+.+..+.+-..++.+.-+.....- + +.. .+...+|++...-+|++++++|+
T Consensus 193 t~aai~s~lf~asvyIilR~-iGk~~h~~msvsyf~~i~lV~s~I~~~~i-g-~~~-lP~cgkdr~l~~~lGvfgfigQI 268 (346)
T KOG4510|consen 193 TVAAISSVLFGASVYIILRY-IGKNAHAIMSVSYFSLITLVVSLIGCASI-G-AVQ-LPHCGKDRWLFVNLGVFGFIGQI 268 (346)
T ss_pred hHHHHHhHhhhhhHHHHHHH-hhccccEEEEehHHHHHHHHHHHHHHhhc-c-cee-cCccccceEEEEEehhhhhHHHH
Confidence 34455555555556666766 34557777777777766665544433222 2 222 23556777788889999999999
Q ss_pred HHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhh
Q 021354 93 FGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL 155 (313)
Q Consensus 93 ~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~ 155 (313)
+...|+|.--|+-.+++-++.-++..+...++|+|.+++. .|+|.++.+...+....
T Consensus 269 llTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~w------s~~Ga~~vvsS~v~~a~ 325 (346)
T KOG4510|consen 269 LLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIW------SWVGAVMVVSSTVWVAL 325 (346)
T ss_pred HHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHH------HhhceeeeehhHHHHHH
Confidence 9999999999999999999999999999999999999988 89998876555554443
No 78
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=95.22 E-value=0.39 Score=39.15 Aligned_cols=104 Identities=18% Similarity=0.206 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhcc-hhhHHH
Q 021354 39 SYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISN-LTPAFT 117 (313)
Q Consensus 39 ~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~t~a~~as~i~~-~~P~~~ 117 (313)
+|..-.+.-+..+.+++..+.... +++.. +..+ +.-++...-|+++.....+....++...++.+..+.- -+-+..
T Consensus 29 s~~~as~i~~~~G~i~~~i~~~~~-~~~~~-~~~~-~~p~w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~s 105 (138)
T PF04657_consen 29 SPLVASFISFGVGFILLLIILLIT-GRPSL-ASLS-SVPWWAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIAS 105 (138)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHh-ccccc-chhc-cCChHHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 599999999999998888877766 33222 2222 2222344567888778888888888888887776654 456666
Q ss_pred HHHHHH----HhhhcccccccccccchhhHHHHHHhHH
Q 021354 118 FTLAVL----FRMEKLALRTLSTQAKIIGTMVSISGAL 151 (313)
Q Consensus 118 ~ll~~~----~~~E~~~~~~~~s~~~~~gi~l~~~G~~ 151 (313)
.+++.+ .-|+|++++ |.+|+++.++|+.
T Consensus 106 l~iD~fG~fg~~~~~~~~~------r~lG~~l~i~Gv~ 137 (138)
T PF04657_consen 106 LLIDHFGLFGAPKRPFSLR------RILGLALMIAGVI 137 (138)
T ss_pred HHHHHccccCCCCCCCCHH------HHHHHHHHHHHHh
Confidence 677775 346666777 9999999999975
No 79
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=94.03 E-value=1.6 Score=39.65 Aligned_cols=248 Identities=10% Similarity=0.104 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CchhhhhhcchhhHHHHH
Q 021354 41 YVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACS-SPTLSSAISNLTPAFTFT 119 (313)
Q Consensus 41 ~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~t-~a~~as~i~~~~P~~~~l 119 (313)
..+++-.|++-+.-=+++.-.. ...+ ++.+.|++... ...+ +..+.+=..++++- +-..=.++=.-.++.+..
T Consensus 34 NLITFaqFlFia~eGlif~skf--~~~k-~kiplk~Y~i~--V~mF-F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~ 107 (330)
T KOG1583|consen 34 NLITFAQFLFIATEGLIFTSKF--FTVK-PKIPLKDYAIT--VAMF-FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMI 107 (330)
T ss_pred eehHHHHHHHHHHhceeeeccc--cccC-CCCchhhhhee--hhee-eeeeeeccceeeecccceEEEEEecCcHHHHHH
Confidence 5667777765554322221111 1122 55666765432 1111 11222222344432 222223334467888999
Q ss_pred HHHHHhhhcccccccccccchhhHHHHHHhHHHHhhhcCCccccCCCCCCCCCCCccccccC--CCCCCchhhHHHHHHH
Q 021354 120 LAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMG--SPSVSNWVTGGFLLAA 197 (313)
Q Consensus 120 l~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~G~ll~l~ 197 (313)
++|++.|.|.+.+ |..++++.-+|+++-...+.++... ++.++.++ ......|..|..+...
T Consensus 108 ~g~il~~k~Ys~~------Qy~Sv~~iTiGiiIcTl~s~~d~~~----------~~~~l~~~~~~~~~~~w~iGi~lL~~ 171 (330)
T KOG1583|consen 108 LGWILLGKRYSLR------QYSSVLMITIGIIICTLFSSKDGRS----------KLSGLDSGSAQSDFFWWLIGIALLVF 171 (330)
T ss_pred HHHHhccceeehh------hhhhHHhhhhhheeEEeecCcchhh----------hhcccccCcccccchHHHHHHHHHHH
Confidence 9999999998888 9999999999998766533332211 01111000 1122356789999999
Q ss_pred HHHHHHHHHHHHHHHHhhcC-hhHHHHHHHHHHHHHHHHHHHh--h------cCCC---CccccccChhhHHHHHHHHhh
Q 021354 198 QCFLLSIWSILLTQIINIYP-AELLVAFLYNLFAAVIAVPLCL--F------AEPD---LSLWRLKPDVALVSIVYSAFL 265 (313)
Q Consensus 198 aa~~~a~~~v~~k~~~~~~~-~~~~~t~~~~l~~~~~~~~~~~--~------~~~~---~~~~~~~~~~~~~~ll~lgv~ 265 (313)
+.+.-|.-.+.|.+.-+++. ++-+..++.=+.+...++...- . ...+ .+.....-+..|.++++..+
T Consensus 172 al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L- 250 (330)
T KOG1583|consen 172 ALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVL- 250 (330)
T ss_pred HHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHH-
Confidence 99998888888877655442 3456777766555444333220 0 0000 00011112345555544432
Q ss_pred hhHHHHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCcccc
Q 021354 266 GPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 311 (313)
Q Consensus 266 ~s~~~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~~ 311 (313)
..-+|----+-.-.+.++-.|+++..+--.+..+++.+.++.++++
T Consensus 251 ~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~ 296 (330)
T KOG1583|consen 251 TQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTP 296 (330)
T ss_pred HHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCH
Confidence 1112221122222455666799999999999999999999998875
No 80
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=93.94 E-value=2.1 Score=38.78 Aligned_cols=253 Identities=10% Similarity=0.124 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHHHHHhC-CCCH--HHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHHHHHHHHHHH
Q 021354 19 VECTTVGLNTLFKAAASK-GLSY--YVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGY 95 (313)
Q Consensus 19 ~~~~~g~~~~~~K~~l~~-~~~p--~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 95 (313)
.-+.+=.+..+.....+. ++.| +.++..+++.=..+-+.-....+.++ +..++|... .++.+-...+.+--
T Consensus 51 ~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~~~k~---r~iP~rtY~---~la~~t~gtmGLsn 124 (367)
T KOG1582|consen 51 VFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLIQTKR---RVIPWRTYV---ILAFLTVGTMGLSN 124 (367)
T ss_pred HHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEeecccc---eecchhHhh---hhHhhhhhccccCc
Confidence 334555566666655442 4666 34555555544322222111110222 234555432 33333223333222
Q ss_pred HHhhccCchhhhhhcc---hhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhhhcCCccccCCCCCCCCC
Q 021354 96 TGIACSSPTLSSAISN---LTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHS 172 (313)
Q Consensus 96 ~gl~~t~a~~as~i~~---~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~~~g~~~~~~~~~~~~~~ 172 (313)
-++.|.+=- +-++.- +.|+ .+.+.++-+.|..+. ...+..+...|+++....+.
T Consensus 125 ~SlgYLNYP-tQviFKccKliPV--miggifIqGkRY~v~------d~~aA~lm~lGli~FTLADs-------------- 181 (367)
T KOG1582|consen 125 GSLGYLNYP-TQVIFKCCKLIPV--MIGGIFIQGKRYGVH------DYIAAMLMSLGLIWFTLADS-------------- 181 (367)
T ss_pred CccccccCc-HHHHHHhhhhhhh--hheeeeeccccccHH------HHHHHHHHHHHHHhhhhccc--------------
Confidence 233333211 223333 3343 344566667776666 78888888899887665111
Q ss_pred CCccccccCCCCCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCh-hHHHHHHHHHHHHHHHHHHHhhcCCCCccccc
Q 021354 173 TNSLHWLMGSPSVSN-WVTGGFLLAAQCFLLSIWSILLTQIINIYPA-ELLVAFLYNLFAAVIAVPLCLFAEPDLSLWRL 250 (313)
Q Consensus 173 ~~~~~~~~~~~~~~~-~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~-~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~ 250 (313)
..+.+ ...|..+.-.+-++=|+-.-.|.+..+.++. ..++.+++..+|.+.+...-...++-.+.|+.
T Consensus 182 ----------~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~f 251 (367)
T KOG1582|consen 182 ----------QTSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTF 251 (367)
T ss_pred ----------ccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHH
Confidence 01122 2579888888888888888888877666542 35677888888888777766655443444431
Q ss_pred ---cChhhHHHHHHHHhhhhHHHHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCcccc
Q 021354 251 ---KPDVALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 311 (313)
Q Consensus 251 ---~~~~~~~~ll~lgv~~s~~~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~~ 311 (313)
+|.......++.+. .+-++...-.-.++.-|+..++.+...--.++++++++++..+++.
T Consensus 252 caehp~~tyGy~~~~s~-~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~ 314 (367)
T KOG1582|consen 252 CAEHPVRTYGYAFLFSL-AGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTE 314 (367)
T ss_pred HHhCcHhHHHHHHHHHH-HhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHH
Confidence 11111112111111 2222333333445777888889999999999999999999888763
No 81
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=92.97 E-value=0.55 Score=41.11 Aligned_cols=62 Identities=11% Similarity=0.090 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHH
Q 021354 84 SFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGAL 151 (313)
Q Consensus 84 g~~~~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ 151 (313)
.+.....+.+..+-++|.++..-+....+.++++.+++.++++|+++.. ++.|+.+.+.|+.
T Consensus 159 ~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~ 220 (222)
T TIGR00803 159 GLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATF 220 (222)
T ss_pred HHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeE
Confidence 3444566677888999999999999999999999999999999999999 9999999888754
No 82
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=92.63 E-value=0.33 Score=42.92 Aligned_cols=72 Identities=24% Similarity=0.306 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHh
Q 021354 77 LSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV 154 (313)
Q Consensus 77 ~~~~~~~g~~~~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~ 154 (313)
+..+.++++.+.+.|.|.+.-+.+-+|-.-+++..+--+|+.+.+.+++..+++.| ||+|..+-+.|..+=.
T Consensus 241 ~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r------QwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 241 FWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR------QWLGTVLVFSALTADV 312 (337)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHHhhhHh
Confidence 44466777777889999999999999988999999999999999999999999999 9999999998876533
No 83
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=92.22 E-value=0.48 Score=43.82 Aligned_cols=100 Identities=18% Similarity=0.202 Sum_probs=68.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCh-hHHHHHHHHHHHHHHHHHHHhhcCCCCccccccChhhHHHHHHHHhh
Q 021354 187 NWVTGGFLLAAQCFLLSIWSILLTQIINIYPA-ELLVAFLYNLFAAVIAVPLCLFAEPDLSLWRLKPDVALVSIVYSAFL 265 (313)
Q Consensus 187 ~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~-~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~ 265 (313)
++..|..+++.++++.+....+||+-..+.+. +.+- +.+..+. ... ..|+ .|+.
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~-------------------~~~~~~~-l~~-~~W~----~G~~ 58 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRA-------------------GSGGRSY-LRR-PLWW----IGLL 58 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-------------------cchhhHH-Hhh-HHHH----HHHH
Confidence 45799999999999999999999986555432 0000 0000000 000 1122 2222
Q ss_pred hhHHHHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCcccc
Q 021354 266 GPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 311 (313)
Q Consensus 266 ~s~~~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~~ 311 (313)
...++......++...+++.++++..+.-++..+++..++||+++.
T Consensus 59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~ 104 (300)
T PF05653_consen 59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTR 104 (300)
T ss_pred HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchH
Confidence 3345556677788889999999999999999999999999999875
No 84
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=90.98 E-value=0.82 Score=34.45 Aligned_cols=47 Identities=21% Similarity=0.400 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHhhccCceee-ecccchHHHHHHHHHHHHhcCccccC
Q 021354 266 GPSFNTIIHTWGLRLKGPVYI-AIFKPLSVVIAAITGIIFLGDTLHLG 312 (313)
Q Consensus 266 ~s~~~~~l~~~~l~~~~~~~v-s~~~~l~Pv~a~l~~~~~l~E~l~~~ 312 (313)
.-++++.++.+++|+.+.+.+ +...-+..+...+.|++++||++|+.
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~ 85 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLS 85 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 445788999999999998887 44455889999999999999999875
No 85
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=90.64 E-value=3 Score=33.93 Aligned_cols=108 Identities=9% Similarity=0.060 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhhcCCCCccccccChhhHHHHHHHHhhhhHHHH
Q 021354 192 GFLLAAQCFLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEPDLSLWRLKPDVALVSIVYSAFLGPSFNT 271 (313)
Q Consensus 192 ~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~s~~~~ 271 (313)
.++.+.+-.+-++......+..++..+|...+++....|.+.+.....+.++. +.+...+..|+..+ -|++ ..+..
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~~l-GG~l-G~~~V 78 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWAYL-GGLL-GVFFV 78 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHHhc-cHHH-HHHHH
Confidence 45677777888888888888887776679999999999999988888776542 12111112344432 3443 34455
Q ss_pred HHHHHHhhccCceee-ecccchHHHHHHHHHHH
Q 021354 272 IIHTWGLRLKGPVYI-AIFKPLSVVIAAITGII 303 (313)
Q Consensus 272 ~l~~~~l~~~~~~~v-s~~~~l~Pv~a~l~~~~ 303 (313)
....+..++.|++.. .....-+-+.++++|.+
T Consensus 79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~f 111 (138)
T PF04657_consen 79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHF 111 (138)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 568888899999864 44445566667777765
No 86
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.50 E-value=4.8 Score=33.22 Aligned_cols=134 Identities=12% Similarity=-0.030 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHHHHHHH
Q 021354 13 LSATVAVECTTVGLN-TLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQ 91 (313)
Q Consensus 13 ~l~l~~~~~~~g~~~-~~~K~~l~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 91 (313)
.+..+.+.++-.... +-.+..-.. =+|+.-.+.-+..+..++..+...+ +++.. .....+.-++.+.-|++|..+-
T Consensus 7 ll~~i~aG~~l~~Q~~iN~qL~~~~-~spl~As~isf~vGt~~L~~l~l~~-~~~~~-~a~~~~~pwW~~~GG~lGa~~v 83 (150)
T COG3238 7 LLFAILAGALLPLQAAINGRLARYL-GSPLLASLISFLVGTVLLLILLLIK-QGHPG-LAAVASAPWWAWIGGLLGAIFV 83 (150)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHHHHHHh-cCCCc-hhhccCCchHHHHccchhhhhh
Confidence 334444444333333 335554322 2699999999999998888777665 33222 2211222334445555554333
Q ss_pred HHHHHHhhccCchh-hhhhcchhhHHHHHHHHH-HhhhcccccccccccchhhHHHHHHhHHH
Q 021354 92 IFGYTGIACSSPTL-SSAISNLTPAFTFTLAVL-FRMEKLALRTLSTQAKIIGTMVSISGALV 152 (313)
Q Consensus 92 ~~~~~gl~~t~a~~-as~i~~~~P~~~~ll~~~-~~~E~~~~~~~~s~~~~~gi~l~~~G~~l 152 (313)
..-........++. ..+...-+-+...+++.+ +++++. |..+..++.|+++.++|+++
T Consensus 84 t~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~---~~~~~~r~lgi~L~l~gil~ 143 (150)
T COG3238 84 TSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPK---RPLNLPRILGILLVLAGILL 143 (150)
T ss_pred hhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCc---CCCCHHHHHHHHHHHHHHHH
Confidence 33333333333332 333334444555555544 333332 33344499999999999443
No 87
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.94 E-value=3 Score=38.56 Aligned_cols=139 Identities=19% Similarity=0.194 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHhhhhhhcCCC----ccCCCccHHHHHHHHHHHH
Q 021354 11 LLLSATVAVECTTVGLNTLFKAAASK-GLSYYVFVAYSYPLATLALLPLPLIFRNTT----TVVPSFKFSILSRIILLSF 85 (313)
Q Consensus 11 ~~~l~l~~~~~~~g~~~~~~K~~l~~-~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~ 85 (313)
.++.++....+.-....+-.|...+. +.+-+.++.+--+++.+.+.......+|.. ..+.......+....+-++
T Consensus 157 ~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv 236 (314)
T KOG1444|consen 157 RGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCV 236 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHH
Confidence 34566666666666666777777654 467788888888888877777665541211 0000011233455666677
Q ss_pred HHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhh
Q 021354 86 IGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL 155 (313)
Q Consensus 86 ~~~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~ 155 (313)
+++.-+++-++-.+.+|+..-++.....=+.+.+...++.+++.++. ..+|+.+++.|-++-..
T Consensus 237 ~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~------n~~gll~~~~ggv~Y~~ 300 (314)
T KOG1444|consen 237 MGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFL------NVIGLLVGFFGGVLYSY 300 (314)
T ss_pred HHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechh------hhHHHHHHhhhhhHHhh
Confidence 77777888888899999888888876666667777777889999988 99999999999876554
No 88
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=88.12 E-value=5.5 Score=37.72 Aligned_cols=137 Identities=18% Similarity=0.208 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHhhhhhh---cCCCccCCCccHHHHHHHHHH
Q 021354 10 ALLLSATVAVECTTVGLNTLFKAAASKG---LSYYVFVAYSYPLATLALLPLPLIF---RNTTTVVPSFKFSILSRIILL 83 (313)
Q Consensus 10 ~~~~l~l~~~~~~~g~~~~~~K~~l~~~---~~p~~~~~~R~~~a~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 83 (313)
..+-++.+++++.||..-++.|.=.+.+ .|--.+-.+=-++..++++|..... ++.+...| +..+...++..
T Consensus 246 llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP--~~~q~~~vv~~ 323 (416)
T KOG2765|consen 246 LLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELP--SSTQFSLVVFN 323 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCC--CCceeEeeeHh
Confidence 4456778889999999999999754432 3333444444455566677654432 12222212 22334456777
Q ss_pred HHHH-HHHHHHHHHHhhccCchhhhhhcc-hhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhh
Q 021354 84 SFIG-VLSQIFGYTGIACSSPTLSSAISN-LTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL 155 (313)
Q Consensus 84 g~~~-~~~~~~~~~gl~~t~a~~as~i~~-~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~ 155 (313)
++++ +..-++|.+|.-.|++-.+++=.. +.|+ .++...++.+.++++. .++|....++|-..+..
T Consensus 324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPL-A~~aD~l~k~~~~S~~------~iiGsi~Ifv~Fv~vn~ 390 (416)
T KOG2765|consen 324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPL-AMFADVLIKGKHPSAL------YIIGSIPIFVGFVIVNI 390 (416)
T ss_pred hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeH-HHHHHHHHcCCCCCHH------HHHHHHHHHHHHhheec
Confidence 8888 788999999999999987776555 5675 4456777777777777 89999888888765443
No 89
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=84.67 E-value=18 Score=33.55 Aligned_cols=135 Identities=16% Similarity=0.206 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHHhhhhhhcCCCccC---CCcc-------HHH
Q 021354 11 LLLSATVAVECTTVGLNTLFKAAASKG----LSYYVFVAYSYPLATLALLPLPLIFRNTTTVV---PSFK-------FSI 76 (313)
Q Consensus 11 ~~~l~l~~~~~~~g~~~~~~K~~l~~~----~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~---~~~~-------~~~ 76 (313)
.++.....+.++=|.-|.+.+..++++ =+|++..+.-.....+.++|..+.. |..... +... .+.
T Consensus 164 ~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~f-EG~~~~~~s~~f~~~d~~~~~rv 242 (349)
T KOG1443|consen 164 EGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLF-EGLHLITSSSIFRFQDTGLILRV 242 (349)
T ss_pred hhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHH-cccccchhhhHHHhcCccHHHHH
Confidence 356666677778888888887777642 2578887777777777777766655 432210 0011 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHH
Q 021354 77 LSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALV 152 (313)
Q Consensus 77 ~~~~~~~g~~~~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~l 152 (313)
...+.+.|...++--...+.=+..|+.-..++...--=+.+.+++..+.+|+++.- .|.|+.++..|+..
T Consensus 243 ~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~l------N~~Gl~i~~agi~~ 312 (349)
T KOG1443|consen 243 IGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLL------NWLGLAICLAGILL 312 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhh------HHHHHHHHHHHHHH
Confidence 11222222222222222223334444444444444566788999999999999988 99999999999865
No 90
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.41 E-value=10 Score=31.37 Aligned_cols=112 Identities=12% Similarity=0.087 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhhcCCCCccccccChhhHHHHHHHHhhhhH
Q 021354 189 VTGGFLLAAQCFLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEPDLSLWRLKPDVALVSIVYSAFLGPS 268 (313)
Q Consensus 189 ~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~s~ 268 (313)
.+..+..+.+-.+-....-+..|+.+...+|....++.++.|++.+..+.++.++.+. +....+..|+..+ -|+++.
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~-~a~~~~~pwW~~~-GG~lGa- 80 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPG-LAAVASAPWWAWI-GGLLGA- 80 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhhccCCchHHHH-ccchhh-
Confidence 3556788888888888988888888888778899999999999999988877544322 2212222344322 233332
Q ss_pred HHHHHHHHHhhccCcee-eecccchHHHHHHHHHHH
Q 021354 269 FNTIIHTWGLRLKGPVY-IAIFKPLSVVIAAITGII 303 (313)
Q Consensus 269 ~~~~l~~~~l~~~~~~~-vs~~~~l~Pv~a~l~~~~ 303 (313)
+--+.......|.|++. +.....-+-+.++++|-+
T Consensus 81 ~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~f 116 (150)
T COG3238 81 IFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHF 116 (150)
T ss_pred hhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhh
Confidence 23334666677887774 555555566666666654
No 91
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=79.05 E-value=40 Score=30.40 Aligned_cols=134 Identities=14% Similarity=-0.014 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHHHHHHHH
Q 021354 13 LSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQI 92 (313)
Q Consensus 13 ~l~l~~~~~~~g~~~~~~K~~l~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 92 (313)
+++.+++.+.+|++++=+|.- +. -|++.+-++-...-.+.=+.....+ +. ++... ...+-|.+-+..+.
T Consensus 2 ~~a~~va~~~fGs~~vPvK~~-~~-gDg~~fQw~~~~~i~~~g~~v~~~~-~~----p~f~p----~amlgG~lW~~gN~ 70 (254)
T PF07857_consen 2 YIACIVAVLFFGSNFVPVKKF-DT-GDGFFFQWVMCSGIFLVGLVVNLIL-GF----PPFYP----WAMLGGALWATGNI 70 (254)
T ss_pred chhHHHHHHHhcccceeeEec-cC-CCcHHHHHHHHHHHHHHHHHHHHhc-CC----Cccee----HHHhhhhhhhcCce
Confidence 567888999999999999984 44 5886666655443333323332333 22 11111 11222333355667
Q ss_pred HHHHHhhccCchhhhhhcchhhHHHHHH-HHH-HhhhcccccccccccchhhHHHHHHhHHHHhhhcC
Q 021354 93 FGYTGIACSSPTLSSAISNLTPAFTFTL-AVL-FRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKG 158 (313)
Q Consensus 93 ~~~~gl~~t~a~~as~i~~~~P~~~~ll-~~~-~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~~~g 158 (313)
+..-.++...-+.+-.+-+..-+.+--. +.+ +|+++.+.. +......+|++++++|..+....|.
T Consensus 71 ~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~-~~~~Ln~~G~~l~~~~~~~f~fik~ 137 (254)
T PF07857_consen 71 LVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVP-SSPWLNYIGVALVLVSGIIFSFIKS 137 (254)
T ss_pred eehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceecccccccc-chhHHHHHHHHHHHHHHHheeeecC
Confidence 7777788888888887777644433333 322 354444322 2234578999999999887665443
No 92
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=77.24 E-value=11 Score=33.32 Aligned_cols=112 Identities=12% Similarity=0.133 Sum_probs=81.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhhhcCCCcc---CCCccHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhcchh
Q 021354 37 GLSYYVFVAYSYPLATLALLPLPLIFRNTTTV---VPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLT 113 (313)
Q Consensus 37 ~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~t~a~~as~i~~~~ 113 (313)
+..-++.+++.-.++..++..+.... +.+.. ....+...+...++-|+..++..++--|-++.++++.-+-..++.
T Consensus 182 Nf~d~dtmfYnNllslPiL~~~s~~~-edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALN 260 (309)
T COG5070 182 NFKDFDTMFYNNLLSLPILLSFSFLF-EDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALN 260 (309)
T ss_pred ccchhhHHHHhhhHHHHHHHHHHHHh-ccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhh
Confidence 36678899999999999988887766 33211 011333344556666666655666666778888888777777777
Q ss_pred hHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhh
Q 021354 114 PAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL 155 (313)
Q Consensus 114 P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~ 155 (313)
-.-.++.+.++++|+.++. .+.++.+++....+-..
T Consensus 261 Klp~alaGlvffdap~nf~------si~sillGflsg~iYav 296 (309)
T COG5070 261 KLPIALAGLVFFDAPVNFL------SIFSILLGFLSGAIYAV 296 (309)
T ss_pred hChHHHhhhhhcCCchhHH------HHHHHHHHHHHHHHHHH
Confidence 6667888999999999999 99999999877655444
No 93
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=76.74 E-value=3.9 Score=32.47 Aligned_cols=47 Identities=9% Similarity=0.187 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHhhccCceeeecc-cchHHHHHHHHHHHHhcCccccC
Q 021354 266 GPSFNTIIHTWGLRLKGPVYIAIF-KPLSVVIAAITGIIFLGDTLHLG 312 (313)
Q Consensus 266 ~s~~~~~l~~~~l~~~~~~~vs~~-~~l~Pv~a~l~~~~~l~E~l~~~ 312 (313)
.-++++.++.+++|+.+.+.+=.+ .-+.-+..++.|++++||++|+.
T Consensus 39 ~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~ 86 (120)
T PRK10452 39 MISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM 86 (120)
T ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 335678888888888877764333 34677788889999999998863
No 94
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=76.39 E-value=37 Score=31.39 Aligned_cols=137 Identities=12% Similarity=0.078 Sum_probs=93.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCccCCC-----ccHHHHHHHHH
Q 021354 9 EALLLSATVAVECTTVGLNTLFKAAAS-KGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPS-----FKFSILSRIIL 82 (313)
Q Consensus 9 ~~~~~l~l~~~~~~~g~~~~~~K~~l~-~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 82 (313)
...+++++......=|......+.... ..+++..+.+.--+..++.-.... .. .+...+. ...+.++.+++
T Consensus 170 s~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~l-i~--qg~~~~av~F~~~hp~~~~Di~l 246 (327)
T KOG1581|consen 170 SPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYL-IL--QGHLLPAVSFIKEHPDVAFDILL 246 (327)
T ss_pred chHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhh-hc--CCCCchHHHHHHcChhHHHHHHH
Confidence 334556666666555555555544443 358899988888777776544432 21 1111111 11234556777
Q ss_pred HHHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHh
Q 021354 83 LSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV 154 (313)
Q Consensus 83 ~g~~~~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~ 154 (313)
.+..++..|.|.+.-++.=.+-.-+.|..+-=+++.+++.+.++.++++. ||.|+.+-+.|+.+=.
T Consensus 247 ~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~------q~~g~~iVFg~i~l~~ 312 (327)
T KOG1581|consen 247 YSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSE------QWLGVLIVFGGIFLEI 312 (327)
T ss_pred HHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchh------hccCeeeehHHHHHHH
Confidence 88888889999888888776666666777778899999999999999999 9999999888876544
No 95
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=73.83 E-value=5.1 Score=31.27 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhccCceeeecc-cchHHHHHHHHHHHHhcCcccc
Q 021354 269 FNTIIHTWGLRLKGPVYIAIF-KPLSVVIAAITGIIFLGDTLHL 311 (313)
Q Consensus 269 ~~~~l~~~~l~~~~~~~vs~~-~~l~Pv~a~l~~~~~l~E~l~~ 311 (313)
+++.++..++|+.+.+.+=.. .-+.-+..++.|++++||++|+
T Consensus 42 ~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~ 85 (110)
T PRK09541 42 ASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDL 85 (110)
T ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 444445555555544432111 2344555677777777777765
No 96
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=70.85 E-value=19 Score=32.83 Aligned_cols=111 Identities=15% Similarity=0.188 Sum_probs=82.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhhhcCCCc--cC--CCccHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhcchh
Q 021354 38 LSYYVFVAYSYPLATLALLPLPLIFRNTTT--VV--PSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLT 113 (313)
Q Consensus 38 ~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~t~a~~as~i~~~~ 113 (313)
-+.-+++++.+.++.+.++..+... +.-. +. .+.+.+.....++.+..+.+.+.+...-++.-.|..++.+...-
T Consensus 218 ~ss~EmvfySy~iG~vflf~~mvlT-ge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaR 296 (367)
T KOG1582|consen 218 ASSSEMVFYSYGIGFVFLFAPMVLT-GELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTAR 296 (367)
T ss_pred CCcceEEEeeecccHHHHHHHHHhc-ccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhH
Confidence 4667888888888888877766654 2211 00 12445566667777777777777777777777888888888888
Q ss_pred hHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhh
Q 021354 114 PAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL 155 (313)
Q Consensus 114 P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~ 155 (313)
-..|.++++++|.++++.+ ...+..+.+.|+++=..
T Consensus 297 KavTi~lSfllFsKPfT~q------y~~~gllv~lgI~Ln~y 332 (367)
T KOG1582|consen 297 KAVTILLSFLLFSKPFTEQ------YVWSGLLVVLGIYLNMY 332 (367)
T ss_pred hHHHHHHHHHHHcCchHHH------HhhhhHHHHHHHHhhcc
Confidence 8899999999999999988 66677777899987554
No 97
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=70.22 E-value=20 Score=27.91 Aligned_cols=45 Identities=11% Similarity=0.098 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhccCceee-ecccchHHHHHHHHHHHHhcCccccC
Q 021354 268 SFNTIIHTWGLRLKGPVYI-AIFKPLSVVIAAITGIIFLGDTLHLG 312 (313)
Q Consensus 268 ~~~~~l~~~~l~~~~~~~v-s~~~~l~Pv~a~l~~~~~l~E~l~~~ 312 (313)
+++|.+...++|+.+...+ +...-+.-+..++.|++++||++|+.
T Consensus 46 ~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~ 91 (109)
T PRK10650 46 LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK 91 (109)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 4566667777777666642 33344566777888888899988863
No 98
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=66.08 E-value=8.8 Score=29.74 Aligned_cols=43 Identities=21% Similarity=0.397 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhccCcee-eecccchHHHHHHHHHHHHhcCcccc
Q 021354 269 FNTIIHTWGLRLKGPVY-IAIFKPLSVVIAAITGIIFLGDTLHL 311 (313)
Q Consensus 269 ~~~~l~~~~l~~~~~~~-vs~~~~l~Pv~a~l~~~~~l~E~l~~ 311 (313)
++|.+...++|+.+... -++..-+--+-.++.|++++||++|.
T Consensus 42 ~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~ 85 (106)
T COG2076 42 LSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSL 85 (106)
T ss_pred HHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCH
Confidence 34444444444444332 12333344556677788888887764
No 99
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.17 E-value=6.5 Score=36.46 Aligned_cols=103 Identities=21% Similarity=0.199 Sum_probs=71.9
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhhcCCCCccccccChhhHHHHHHHHh
Q 021354 185 VSNWVTGGFLLAAQCFLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEPDLSLWRLKPDVALVSIVYSAF 264 (313)
Q Consensus 185 ~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv 264 (313)
..++..|.++++.+++..+...++.|+-.++... . ..=...+.-+. .. .+.| +.|+
T Consensus 16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~----~--------------~~ra~~gg~~y-l~-~~~W----w~G~ 71 (335)
T KOG2922|consen 16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA----S--------------GLRAGEGGYGY-LK-EPLW----WAGM 71 (335)
T ss_pred ccCceeeeeehhhccEEEeeehhhhHHHHHHHhh----h--------------cccccCCCcch-hh-hHHH----HHHH
Confidence 4456789999999999999999998886655321 0 00001111111 11 1122 3455
Q ss_pred hhhHHHHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCcccc
Q 021354 265 LGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 311 (313)
Q Consensus 265 ~~s~~~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~~ 311 (313)
+..+++-..++-+....+++.++.+..++-++.++++..+++|++++
T Consensus 72 ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~ 118 (335)
T KOG2922|consen 72 LTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNL 118 (335)
T ss_pred HHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777777788999999999999999999999999999875
No 100
>PRK11431 multidrug efflux system protein; Provisional
Probab=63.25 E-value=12 Score=28.96 Aligned_cols=45 Identities=24% Similarity=0.403 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhccCceee-ecccchHHHHHHHHHHHHhcCccccC
Q 021354 268 SFNTIIHTWGLRLKGPVYI-AIFKPLSVVIAAITGIIFLGDTLHLG 312 (313)
Q Consensus 268 ~~~~~l~~~~l~~~~~~~v-s~~~~l~Pv~a~l~~~~~l~E~l~~~ 312 (313)
+++|.+...++|+.+...+ +...-+.-+..++.|++++||++|+.
T Consensus 40 ~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~ 85 (105)
T PRK11431 40 IVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA 85 (105)
T ss_pred HHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 3455555555555555432 23333555667778888888887753
No 101
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=59.63 E-value=1.3e+02 Score=26.81 Aligned_cols=123 Identities=12% Similarity=0.005 Sum_probs=70.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH-hhhhhhcCCCccCCCccHHHHHHHHHHHHHH
Q 021354 9 EALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALL-PLPLIFRNTTTVVPSFKFSILSRIILLSFIG 87 (313)
Q Consensus 9 ~~~~~l~l~~~~~~~g~~~~~~K~~l~~~~~p~~~~~~R~~~a~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 87 (313)
...++++.+.++++=|...+.....++.+-.|+..--.++-.-++++. .....+ ++....+.--.+.+-...+.-++.
T Consensus 112 ~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~-~~~~~~~~g~f~G~~~~~~~~i~~ 190 (244)
T PF04142_consen 112 PLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLS-DGSAISESGFFHGYSWWVWIVIFL 190 (244)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcc-cccccccCCchhhcchHHHHHHHH
Confidence 345677788888899999999877777654565555555433333332 222222 221110110011111111222222
Q ss_pred -HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhccccc
Q 021354 88 -VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALR 132 (313)
Q Consensus 88 -~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~ 132 (313)
+..-...-.-++|.+.-.=..-....-+++.++++.+++.+++..
T Consensus 191 ~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~ 236 (244)
T PF04142_consen 191 QAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLS 236 (244)
T ss_pred HHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchH
Confidence 334445556688887665555566777788999999999999877
No 102
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=59.15 E-value=7.6 Score=34.79 Aligned_cols=132 Identities=20% Similarity=0.156 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHHHHHHH
Q 021354 12 LLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQ 91 (313)
Q Consensus 12 ~~l~l~~~~~~~g~~~~~~K~~l~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 91 (313)
++..++...+-+-...+..+.---++.+.+.--+.-+.++++++.. ++ + . ++.++..+ +-.+.|++=...+
T Consensus 153 gi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~~~---~~-~--~--~~~~K~t~-~nii~G~~Wa~GN 223 (288)
T COG4975 153 GIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALILGF---FK-M--E--KRFNKYTW-LNIIPGLIWAIGN 223 (288)
T ss_pred heeeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHHHhh---cc-c--c--cchHHHHH-HHHhhHHHHHhhH
Confidence 3444444444444433333332223466666666666666655432 11 1 1 12233333 3446677766677
Q ss_pred HHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHh
Q 021354 92 IFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV 154 (313)
Q Consensus 92 ~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~ 154 (313)
.+++.+-+....+.+=.+..+..+...+-+.+++|||-+++.+ ...++|+++.++|++++.
T Consensus 224 l~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm--~~v~iGiilivvgai~lg 284 (288)
T COG4975 224 LFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEM--VYVIIGIILIVVGAILLG 284 (288)
T ss_pred HHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhh--hhhhhhHHHHHHHhhhhh
Confidence 7777777765555555556677777788888999999888722 123556666666666544
No 103
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=58.07 E-value=1.5e+02 Score=27.35 Aligned_cols=139 Identities=14% Similarity=0.167 Sum_probs=85.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHHHH----HhhhhhhcCCCcc-CCCccHHHHHHH-
Q 021354 8 REALLLSATVAVECTTVGLNTL-FKAAASKGLSYYVFVAYSYPLATLAL----LPLPLIFRNTTTV-VPSFKFSILSRI- 80 (313)
Q Consensus 8 ~~~~~~l~l~~~~~~~g~~~~~-~K~~l~~~~~p~~~~~~R~~~a~~~l----~~~~~~~~~~~~~-~~~~~~~~~~~~- 80 (313)
+-..+-++.++++++-+.-.++ -|..-.++.+|.+.+.+.-.++..++ .|+....-++... .++-.+.|+...
T Consensus 173 ~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~ 252 (372)
T KOG3912|consen 173 SIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAF 252 (372)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHH
Confidence 3445677889999999999998 45554567999999999988774433 2332221011110 011112232211
Q ss_pred --------HHHHHHH-HHHH-HHHHHHhh---ccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHH
Q 021354 81 --------ILLSFIG-VLSQ-IFGYTGIA---CSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSI 147 (313)
Q Consensus 81 --------~~~g~~~-~~~~-~~~~~gl~---~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~ 147 (313)
+.+.+.+ ...- .+=+.|+. +.|+++=.++=.+--.+.-+++.....|+++.- |+.|-++-.
T Consensus 253 ~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~ll------qilGFliLi 326 (372)
T KOG3912|consen 253 AALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLL------QILGFLILI 326 (372)
T ss_pred HHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHH------HHHHHHHHH
Confidence 1122222 1111 11223443 446676677777777788888888899999999 999999999
Q ss_pred HhHHH
Q 021354 148 SGALV 152 (313)
Q Consensus 148 ~G~~l 152 (313)
.|+++
T Consensus 327 ~Gi~l 331 (372)
T KOG3912|consen 327 MGIIL 331 (372)
T ss_pred HHHHH
Confidence 99865
No 104
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=50.96 E-value=71 Score=26.77 Aligned_cols=85 Identities=15% Similarity=0.183 Sum_probs=47.3
Q ss_pred hhhcccccccccccchhhHH-------HHHHhHHHHhhhcCCccccCCCCCCCCCCCccccccCCCCCCchhhHHHHHHH
Q 021354 125 RMEKLALRTLSTQAKIIGTM-------VSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAA 197 (313)
Q Consensus 125 ~~E~~~~~~~~s~~~~~gi~-------l~~~G~~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~ 197 (313)
+-|-.-+++.|+..|..|+. +++.|+.++... .+.+......+.+.
T Consensus 87 f~Em~v~KtsP~LYr~LGIfLPLITTNCaVLgvaLln~~---------------------------~~~~f~qsv~~gf~ 139 (193)
T COG4657 87 FTEMVVRKTSPTLYRLLGIFLPLITTNCAVLGVALLNIN---------------------------EGHNFLQSVVYGFG 139 (193)
T ss_pred HHHHHHHccCHHHHHHHHHhhhhHhhchHHHHHHHHHhh---------------------------hhhhHHHHHHHHhh
Confidence 44444444445555666665 467787765542 13344556777788
Q ss_pred HHHHHHHHHHHHHHHHh-----hcChhHHHHHHHHHHHHHHHHH
Q 021354 198 QCFLLSIWSILLTQIIN-----IYPAELLVAFLYNLFAAVIAVP 236 (313)
Q Consensus 198 aa~~~a~~~v~~k~~~~-----~~~~~~~~t~~~~l~~~~~~~~ 236 (313)
++..|+.-.++..-..+ +.|.|..-..+-+..++++.+.
T Consensus 140 a~lGfslvmvlfA~iRER~~~advP~~frG~~ialitagLmSla 183 (193)
T COG4657 140 AALGFSLVMVLFAAIRERLALADVPAPFRGAAIALITAGLMSLA 183 (193)
T ss_pred hHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHH
Confidence 88888887776544332 3344444444444444444443
No 105
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=50.12 E-value=15 Score=33.49 Aligned_cols=137 Identities=14% Similarity=0.198 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHhhhh--------hhcCCCccCCCccHHHHHHHHH
Q 021354 12 LLSATVAVECTTVGLNTLFKAAASK-GLSYYVFVAYSYPLATLALLPLPL--------IFRNTTTVVPSFKFSILSRIIL 82 (313)
Q Consensus 12 ~~l~l~~~~~~~g~~~~~~K~~l~~-~~~p~~~~~~R~~~a~~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 82 (313)
++..+..+.+.=+-+.......+++ |=++-+..++-=+++...++...- .+...+...+..... ......
T Consensus 165 Gi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~-vP~~~~ 243 (330)
T KOG1583|consen 165 GIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFK-VPSMWV 243 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCcc-ccHHHH
Confidence 4455555555555555555554442 567888888877777654443210 000000000000000 111112
Q ss_pred HHHHHHHHHHHHHHHhhcc----CchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhh
Q 021354 83 LSFIGVLSQIFGYTGIACS----SPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL 155 (313)
Q Consensus 83 ~g~~~~~~~~~~~~gl~~t----~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~ 155 (313)
--+++.+.|.+...|..-. ++-+.++...+-=++..+++...|+.++++. .|+|..+-+.|.++-..
T Consensus 244 yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~------h~lGa~lVF~Gt~~fa~ 314 (330)
T KOG1583|consen 244 YLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPW------HWLGAALVFFGTLLFAN 314 (330)
T ss_pred HHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHH------HHHHHHHHHHHHHHHHH
Confidence 2233477888888887644 3445666777888999999999999999999 99999999999987553
No 106
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=47.03 E-value=1.4e+02 Score=23.29 Aligned_cols=112 Identities=19% Similarity=0.204 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHHHHH
Q 021354 13 LSATVAVECTTVGLNTLFKAAASKGLSY------YVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFI 86 (313)
Q Consensus 13 ~l~l~~~~~~~g~~~~~~K~~l~~~~~p------~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 86 (313)
...++.+..+||...+++|.+-. +.+- -...++|-.... ...++.++ -=++
T Consensus 5 ~~~lvaVgllWG~Tnplirrgs~-g~~~v~~~~~k~~~~lqe~~tl------------------~l~w~Y~i----PFll 61 (125)
T KOG4831|consen 5 MDKLVAVGLLWGATNPLIRRGSL-GWDKVKSSSRKIMIALQEMKTL------------------FLNWEYLI----PFLL 61 (125)
T ss_pred HHHHHHHHHHHccccHHHHHHHh-hHhhccCchHHHHHHHHHHHHH------------------HHhHHHHH----HHHH
Confidence 34678899999999999997632 2221 111111111000 01122221 1123
Q ss_pred HHHHHHHHHHHhhccCchhhhhhcc-hhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHH
Q 021354 87 GVLSQIFGYTGIACSSPTLSSAISN-LTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVV 153 (313)
Q Consensus 87 ~~~~~~~~~~gl~~t~a~~as~i~~-~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll 153 (313)
+-.....|++-+++++-+.+.-+-+ +.=.|+...+..+. |+..-++ .+.|+.+.++|+.+.
T Consensus 62 NqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LG-E~~~g~~-----a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 62 NQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALG-EETQGGL-----ALLGTSLIVFGIWLC 123 (125)
T ss_pred HHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhc-cccccce-----eehhhhHHhhhhhhe
Confidence 3456678889999999888887665 45557777777664 5554331 788999999998754
No 107
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=41.46 E-value=40 Score=27.60 Aligned_cols=29 Identities=21% Similarity=0.238 Sum_probs=22.2
Q ss_pred HHhhccCchhhhhhcchhhHHHHHHHHHH
Q 021354 96 TGIACSSPTLSSAISNLTPAFTFTLAVLF 124 (313)
Q Consensus 96 ~gl~~t~a~~as~i~~~~P~~~~ll~~~~ 124 (313)
.|+.--+.-.++.+.|+.|+++.+++.++
T Consensus 67 iGi~EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 67 LGIEEKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred EccCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566678999999999988887666
No 108
>PRK02237 hypothetical protein; Provisional
Probab=37.28 E-value=42 Score=26.05 Aligned_cols=33 Identities=12% Similarity=0.176 Sum_probs=25.3
Q ss_pred HHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhh
Q 021354 117 TFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL 155 (313)
Q Consensus 117 ~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~ 155 (313)
..+-.+.+-++|+++. .++|..+|++|+.++..
T Consensus 73 Sl~W~w~vdg~~Pd~~------D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 73 SLLWLWVVDGVRPDRW------DWIGAAICLVGMAVIMY 105 (109)
T ss_pred HHHHHHHhcCcCCChh------HHHhHHHHHHhHHHhee
Confidence 3344666777777777 89999999999987764
No 109
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=35.90 E-value=37 Score=26.25 Aligned_cols=34 Identities=12% Similarity=0.213 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhh
Q 021354 116 FTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL 155 (313)
Q Consensus 116 ~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~ 155 (313)
...+-.+.+-++|+++. .++|..+|++|+.++..
T Consensus 70 ~Sl~W~w~vdg~~Pd~~------D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 70 ASLLWGWLVDGVRPDRW------DWIGAAICLVGVAIILF 103 (107)
T ss_pred HHHHHHhhhcCcCCChH------HHHhHHHHHHhHHheEe
Confidence 34444666777777777 99999999999988764
No 110
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=34.90 E-value=31 Score=26.68 Aligned_cols=28 Identities=11% Similarity=0.167 Sum_probs=20.9
Q ss_pred HHHHHHHhhhcccccccccccchhhHHHHHHhHH
Q 021354 118 FTLAVLFRMEKLALRTLSTQAKIIGTMVSISGAL 151 (313)
Q Consensus 118 ~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ 151 (313)
..++.+++||++++. ...|-++.+.++.
T Consensus 77 ~~Fsv~~l~E~l~~n------~l~af~~i~~av~ 104 (108)
T PF04342_consen 77 APFSVFYLGEPLKWN------YLWAFLCILGAVY 104 (108)
T ss_pred HHHHHHHhCCCccHH------HHHHHHHHHHhhh
Confidence 445778899999999 7777776655544
No 111
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=33.67 E-value=31 Score=30.00 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=37.4
Q ss_pred HHHHHHHHhhccCceeeecccchHHHHHHHHHHHHhcCccc
Q 021354 270 NTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLH 310 (313)
Q Consensus 270 ~~~l~~~~l~~~~~~~vs~~~~l~Pv~a~l~~~~~l~E~l~ 310 (313)
+.++|..++++++|+.+|....-.-.+..+++++++|+.+.
T Consensus 66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~ 106 (290)
T KOG4314|consen 66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFM 106 (290)
T ss_pred CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchh
Confidence 55679999999999999999999999999999999999864
No 112
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.96 E-value=66 Score=24.55 Aligned_cols=31 Identities=10% Similarity=0.252 Sum_probs=22.8
Q ss_pred HHHHHHHhhhcccccccccccchhhHHHHHHhHHHHh
Q 021354 118 FTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV 154 (313)
Q Consensus 118 ~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~ 154 (313)
..++.+..||++++. .+.|-.+...|+.++.
T Consensus 84 v~Fsvfyl~epl~~~------~l~a~~~i~gav~fiF 114 (116)
T COG3169 84 VPFSVFYLKEPLRWN------YLWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHHcCcchHH------HHHHHHHHHHHHHHhc
Confidence 345777899999999 7877777666666543
No 113
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=27.32 E-value=2.3e+02 Score=25.82 Aligned_cols=130 Identities=7% Similarity=-0.067 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCccCCCccHHHHHHHHHH-HHHHHHH
Q 021354 12 LLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILL-SFIGVLS 90 (313)
Q Consensus 12 ~~l~l~~~~~~~g~~~~~~K~~l~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~ 90 (313)
+=.++++++.+++.+.+.-....+ ..|-.++...--++++++-...... ++++. ..+.+..-....+. .+..++.
T Consensus 167 GD~lvi~GATlYaVSNv~EEflvk-n~d~~elm~~lgLfGaIIsaIQ~i~--~~~~~-~tl~w~~~i~~yl~f~L~MFll 242 (336)
T KOG2766|consen 167 GDFLVIAGATLYAVSNVSEEFLVK-NADRVELMGFLGLFGAIISAIQFIF--ERHHV-STLHWDSAIFLYLRFALTMFLL 242 (336)
T ss_pred CcEEEEecceeeeeccccHHHHHh-cCcHHHHHHHHHHHHHHHHHHHHhh--hccce-eeEeehHHHHHHHHHHHHHHHH
Confidence 334567788889999998888655 5899999988888888887777444 44443 33444221122122 1111333
Q ss_pred HHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHH
Q 021354 91 QIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVV 153 (313)
Q Consensus 91 ~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll 153 (313)
..+.-.=++.++++.-.+-.-+.-++..++ ..|+-+++|- -.++-.....|.++-
T Consensus 243 Ysl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wL------Y~laF~~i~~GliiY 297 (336)
T KOG2766|consen 243 YSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWL------YFLAFATIATGLIIY 297 (336)
T ss_pred HHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhh------hHHHHHHHHHhhEEe
Confidence 333333355555553333333334444444 4456667666 677777777776543
No 114
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=26.53 E-value=78 Score=26.15 Aligned_cols=29 Identities=28% Similarity=0.254 Sum_probs=21.0
Q ss_pred HhhccCchhhhhhcchhhHHHHHHHHHHh
Q 021354 97 GIACSSPTLSSAISNLTPAFTFTLAVLFR 125 (313)
Q Consensus 97 gl~~t~a~~as~i~~~~P~~~~ll~~~~~ 125 (313)
++...+.-.++.+.|+.|++.++++..+.
T Consensus 68 ~i~e~~llkaa~lvYllPLl~li~ga~l~ 96 (154)
T PRK10862 68 GIAEGSLLRSALLVYMTPLVGLFLGAALF 96 (154)
T ss_pred ecchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556788889999999888776654
No 115
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=25.80 E-value=1.7e+02 Score=22.87 Aligned_cols=43 Identities=14% Similarity=0.169 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhccCceeeecc-cchHHHHHHHHHHHHhcCccc
Q 021354 268 SFNTIIHTWGLRLKGPVYIAIF-KPLSVVIAAITGIIFLGDTLH 310 (313)
Q Consensus 268 ~~~~~l~~~~l~~~~~~~vs~~-~~l~Pv~a~l~~~~~l~E~l~ 310 (313)
..+-.+|++.+.+.+-+.+... +.+.-+++++.|+++.+|..+
T Consensus 52 q~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~ 95 (113)
T PF10639_consen 52 QSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVIS 95 (113)
T ss_pred HHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccc
Confidence 3456678888999999988887 588999999999777666554
No 116
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=21.86 E-value=7.3e+02 Score=24.63 Aligned_cols=49 Identities=4% Similarity=-0.024 Sum_probs=29.5
Q ss_pred hhhhcchhhHHHHHHHHHH--hhhccc-ccccccccchhhHHHHHHhHHHHh
Q 021354 106 SSAISNLTPAFTFTLAVLF--RMEKLA-LRTLSTQAKIIGTMVSISGALVVV 154 (313)
Q Consensus 106 as~i~~~~P~~~~ll~~~~--~~E~~~-~~~~~s~~~~~gi~l~~~G~~ll~ 154 (313)
++.++++.|+++.+++.++ .=.|.. +++.||-.+.+++.+.++|+..+.
T Consensus 310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~ 361 (493)
T PRK15462 310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCI 361 (493)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 6677889999988776553 112221 122345556677777777766544
No 117
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=21.51 E-value=9.6e+02 Score=25.21 Aligned_cols=29 Identities=10% Similarity=-0.028 Sum_probs=19.9
Q ss_pred HhhhcccccccccccchhhHHHHHHhHHH
Q 021354 124 FRMEKLALRTLSTQAKIIGTMVSISGALV 152 (313)
Q Consensus 124 ~~~E~~~~~~~~s~~~~~gi~l~~~G~~l 152 (313)
.+.++..++++|++.-.+++++..+-..+
T Consensus 723 ~r~~~~~~~~~p~~~l~~~~~~~~~~~~~ 751 (755)
T TIGR01647 723 TRTHGFFWSERPGKLLFIAFVIAQIIATF 751 (755)
T ss_pred eccCCCCcccCCcHHHHHHHHHHHHHHHH
Confidence 35677777888888877777766554443
No 118
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=21.31 E-value=97 Score=24.69 Aligned_cols=25 Identities=16% Similarity=0.192 Sum_probs=18.7
Q ss_pred cCchhhhhhcchhhHHHHHHHHHHh
Q 021354 101 SSPTLSSAISNLTPAFTFTLAVLFR 125 (313)
Q Consensus 101 t~a~~as~i~~~~P~~~~ll~~~~~ 125 (313)
.+...++.+.|..|++.++++..+.
T Consensus 65 ~~~~~aa~l~Y~lPll~li~g~~l~ 89 (135)
T PF04246_consen 65 SSLLKAAFLVYLLPLLALIAGAVLG 89 (135)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678888999998888876653
Done!