Query 021354
Match_columns 313
No_of_seqs 105 out of 1091
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 16:25:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021354.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021354hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.2 3E-06 1E-10 67.9 6.5 68 82-155 34-103 (137)
2 3b5d_A Multidrug transporter E 98.1 5.9E-06 2E-10 63.7 7.1 68 82-155 34-103 (110)
3 2i68_A Protein EMRE; transmemb 97.6 4.8E-05 1.6E-09 60.9 4.0 51 262-312 35-86 (137)
4 3b5d_A Multidrug transporter E 96.8 0.0012 3.9E-08 50.7 4.3 51 262-312 35-86 (110)
5 1q90_R Cytochrome B6-F complex 12.7 1.4E+02 0.0048 18.7 2.4 30 1-33 9-38 (49)
6 2pq4_B Periplasmic nitrate red 11.7 1.4E+02 0.0048 17.2 2.0 11 1-11 3-13 (35)
7 2hac_A T-cell surface glycopro 7.5 2.6E+02 0.0088 16.0 1.9 17 116-132 15-31 (33)
8 3arc_T Photosystem II reaction 4.1 6.5E+02 0.022 14.2 2.8 17 296-312 14-30 (32)
9 1afo_A Glycophorin A; integral 3.8 4.4E+02 0.015 15.6 1.4 16 139-154 15-30 (40)
10 2jp3_A FXYD domain-containing 3.8 5.4E+02 0.019 17.1 2.0 15 140-154 23-37 (67)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.17 E-value=3e-06 Score=67.95 Aligned_cols=68 Identities=25% Similarity=0.236 Sum_probs=50.6
Q ss_pred HHHHHH-HHHHHHHHHHhhccCchhhhhh-cchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhh
Q 021354 82 LLSFIG-VLSQIFGYTGIACSSPTLSSAI-SNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL 155 (313)
Q Consensus 82 ~~g~~~-~~~~~~~~~gl~~t~a~~as~i-~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~ 155 (313)
..+++. .+.+.++..++++.+++.+..+ .++.|+++.++++++++|+++++ +++|+++.++|++++..
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 345555 6788999999999999999888 79999999999999999999999 99999999999998775
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.12 E-value=5.9e-06 Score=63.74 Aligned_cols=68 Identities=25% Similarity=0.236 Sum_probs=60.3
Q ss_pred HHHHHH-HHHHHHHHHHhhccCchhhhhh-cchhhHHHHHHHHHHhhhcccccccccccchhhHHHHHHhHHHHhh
Q 021354 82 LLSFIG-VLSQIFGYTGIACSSPTLSSAI-SNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL 155 (313)
Q Consensus 82 ~~g~~~-~~~~~~~~~gl~~t~a~~as~i-~~~~P~~~~ll~~~~~~E~~~~~~~~s~~~~~gi~l~~~G~~ll~~ 155 (313)
..++.. ..++.++..++++.|.+.+..+ ..+.|+++.++++++++|+++++ |++|+++.+.|++++..
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 345555 6788899999999999999887 78999999999999999999999 99999999999987664
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.57 E-value=4.8e-05 Score=60.88 Aligned_cols=51 Identities=12% Similarity=0.094 Sum_probs=37.3
Q ss_pred HHhhhhHHHHHHHHHHhhccCceeeecc-cchHHHHHHHHHHHHhcCccccC
Q 021354 262 SAFLGPSFNTIIHTWGLRLKGPVYIAIF-KPLSVVIAAITGIIFLGDTLHLG 312 (313)
Q Consensus 262 lgv~~s~~~~~l~~~~l~~~~~~~vs~~-~~l~Pv~a~l~~~~~l~E~l~~~ 312 (313)
+++++++++|.+|++++|+.+++++..+ ..+.|++++++|++++||++++.
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~ 86 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP 86 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 5567888999999999999999999999 89999999999999999999874
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=96.79 E-value=0.0012 Score=50.70 Aligned_cols=51 Identities=12% Similarity=0.094 Sum_probs=45.8
Q ss_pred HHhhhhHHHHHHHHHHhhccCceeeecc-cchHHHHHHHHHHHHhcCccccC
Q 021354 262 SAFLGPSFNTIIHTWGLRLKGPVYIAIF-KPLSVVIAAITGIIFLGDTLHLG 312 (313)
Q Consensus 262 lgv~~s~~~~~l~~~~l~~~~~~~vs~~-~~l~Pv~a~l~~~~~l~E~l~~~ 312 (313)
.++++.+++|.++.+++|+.+.+.+..+ ..+.|+.+++++++++||++|+.
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~ 86 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP 86 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH
Confidence 4555678899999999999999999888 79999999999999999999863
No 5
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=12.71 E-value=1.4e+02 Score=18.73 Aligned_cols=30 Identities=17% Similarity=-0.149 Sum_probs=15.0
Q ss_pred CccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021354 1 MERRKFFREALLLSATVAVECTTVGLNTLFKAA 33 (313)
Q Consensus 1 ~~~~~~~~~~~~~l~l~~~~~~~g~~~~~~K~~ 33 (313)
|+||.|++.... -..+...-+...+.+|..
T Consensus 9 m~RRqfln~l~~---G~~a~~a~~~~~P~v~ff 38 (49)
T 1q90_R 9 MNKRNIMNLILA---GGAGLPITTLALGYGAFF 38 (49)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH---HHHHHHHHHHHHhhheee
Confidence 467776555432 222333444555566654
No 6
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=11.71 E-value=1.4e+02 Score=17.22 Aligned_cols=11 Identities=27% Similarity=0.676 Sum_probs=7.5
Q ss_pred CccchhhhhhH
Q 021354 1 MERRKFFREAL 11 (313)
Q Consensus 1 ~~~~~~~~~~~ 11 (313)
++||+|.|...
T Consensus 3 lsRR~FLK~~a 13 (35)
T 2pq4_B 3 LSRRSFMKANA 13 (35)
T ss_dssp CCSHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 46999877543
No 7
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=7.52 E-value=2.6e+02 Score=15.98 Aligned_cols=17 Identities=24% Similarity=0.340 Sum_probs=10.9
Q ss_pred HHHHHHHHHhhhccccc
Q 021354 116 FTFTLAVLFRMEKLALR 132 (313)
Q Consensus 116 ~~~ll~~~~~~E~~~~~ 132 (313)
.-.++..++.+||+++.
T Consensus 15 Ygii~T~Ly~R~K~~~~ 31 (33)
T 2hac_A 15 YGVILTALFLRVKFSRS 31 (33)
T ss_dssp HHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 33455667778887654
No 8
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=4.11 E-value=6.5e+02 Score=14.17 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=9.6
Q ss_pred HHHHHHHHHhcCccccC
Q 021354 296 IAAITGIIFLGDTLHLG 312 (313)
Q Consensus 296 ~a~l~~~~~l~E~l~~~ 312 (313)
.++++-.+++.|++..+
T Consensus 14 lgiiFFAI~FRePPri~ 30 (32)
T 3arc_T 14 IALFFFAIFFREPPRIT 30 (32)
T ss_dssp HHHHHHHHHTSCCCCCC
T ss_pred HHHHHHhhhhcCCCCCC
Confidence 34555556666666543
No 9
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=3.81 E-value=4.4e+02 Score=15.62 Aligned_cols=16 Identities=25% Similarity=0.673 Sum_probs=10.5
Q ss_pred chhhHHHHHHhHHHHh
Q 021354 139 KIIGTMVSISGALVVV 154 (313)
Q Consensus 139 ~~~gi~l~~~G~~ll~ 154 (313)
.+.|+..+++|.+++.
T Consensus 15 II~~vmaGiIG~IllI 30 (40)
T 1afo_A 15 IIFGVMAGVIGTILLI 30 (40)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3556677777776655
No 10
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=3.79 E-value=5.4e+02 Score=17.15 Aligned_cols=15 Identities=27% Similarity=0.636 Sum_probs=10.5
Q ss_pred hhhHHHHHHhHHHHh
Q 021354 140 IIGTMVSISGALVVV 154 (313)
Q Consensus 140 ~~gi~l~~~G~~ll~ 154 (313)
+++.++.++|++++.
T Consensus 23 ifA~vLfi~GI~iil 37 (67)
T 2jp3_A 23 IFGGLLCIAGIALAL 37 (67)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 456667778887766
Done!