Query 021354
Match_columns 313
No_of_seqs 105 out of 1091
Neff 8.2
Searched_HMMs 13730
Date Mon Mar 25 16:25:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021354.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021354hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 6.7 1.7E+02 0.012 14.2 2.7 18 189-206 2-19 (27)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 6.0 1.6E+02 0.011 14.6 1.8 13 118-130 16-28 (30)
3 d1v54k_ f.23.5.1 (K:) Mitochon 4.2 2.9E+02 0.021 15.6 2.4 36 5-40 3-39 (49)
4 d2r6gf1 e.70.1.1 (F:13-260) Ma 2.8 1E+03 0.074 17.8 6.3 49 80-132 5-53 (248)
5 d2e74d2 f.23.12.1 (D:12-45) IS 2.0 5.6E+02 0.041 12.9 2.7 29 1-32 2-30 (34)
6 d1gl4a1 d.22.1.2 (A:399-631) D 1.9 2.5E+02 0.018 21.7 0.1 36 96-132 43-78 (233)
7 d1ppjg_ f.23.13.1 (G:) Ubiquin 1.6 9.7E+02 0.071 14.5 2.8 22 258-280 44-65 (75)
8 d1w53a_ a.186.1.2 (A:) Phospho 1.5 9.8E+02 0.071 14.8 2.8 18 29-46 33-50 (84)
9 d3cx5h1 f.23.13.1 (H:2-94) Ubi 1.4 1.1E+03 0.077 15.0 2.8 21 259-280 55-75 (93)
10 d1q90a3 f.23.23.1 (A:248-292) 1.4 9.2E+02 0.067 13.1 3.8 31 185-215 1-31 (45)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.74 E-value=1.7e+02 Score=14.23 Aligned_cols=18 Identities=11% Similarity=0.191 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 021354 189 VTGGFLLAAQCFLLSIWS 206 (313)
Q Consensus 189 ~~G~ll~l~aa~~~a~~~ 206 (313)
.+|.+..-++.+.||.|-
T Consensus 2 vlgli~~tl~glf~aayq 19 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHH
Confidence 367777778888888774
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.98 E-value=1.6e+02 Score=14.62 Aligned_cols=13 Identities=15% Similarity=0.120 Sum_probs=6.8
Q ss_pred HHHHHHHhhhccc
Q 021354 118 FTLAVLFRMEKLA 130 (313)
Q Consensus 118 ~ll~~~~~~E~~~ 130 (313)
.++-.++++|+.+
T Consensus 16 lfffaiffreppr 28 (30)
T d2axtt1 16 LFFFAIFFREPPR 28 (30)
T ss_dssp HHHHHHHTSCCCC
T ss_pred HHHHHHHhcCCCC
Confidence 3344455677653
No 3
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.20 E-value=2.9e+02 Score=15.65 Aligned_cols=36 Identities=6% Similarity=-0.190 Sum_probs=18.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHhCCCCH
Q 021354 5 KFFREALLLSATVAVECTTVGL-NTLFKAAASKGLSY 40 (313)
Q Consensus 5 ~~~~~~~~~l~l~~~~~~~g~~-~~~~K~~l~~~~~p 40 (313)
+|+.|+...++.-.+.++-+.. +++.+..++-+.+|
T Consensus 3 ~FHdKYGn~vL~~Ga~fc~avW~yv~TQ~gI~WnlSP 39 (49)
T d1v54k_ 3 DFHDKYGNAVLASGATFCVAVWVYMATQIGIEWNPSP 39 (49)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCC
T ss_pred ccccccCcEEEecccchhhhhhhheeeeeeeeecccc
Confidence 5677777666555554443332 34445444444554
No 4
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=2.75 E-value=1e+03 Score=17.85 Aligned_cols=49 Identities=14% Similarity=0.021 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhhccccc
Q 021354 80 IILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALR 132 (313)
Q Consensus 80 ~~~~g~~~~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~ 132 (313)
..++|+++.+..+.....+..-+-..+ ...-+.+.++.++++.+|.-..
T Consensus 5 ~~ll~l~~a~~~~~~~~~~~~~~~~~a----~~~~~~~~~~~~vy~s~r~~p~ 53 (248)
T d2r6gf1 5 WSVLGLLGLLVGYLVVLMYAQGEYLFA----ITTLILSSAGLYIFANRKAYAW 53 (248)
T ss_dssp HHHHHHHHHHHHHTHHHHHGGGCHHHH----HHHHHHHHHHHHHHSSSCCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHH----HHHHHHHHheEEEEEccCccce
Confidence 445566654333333333333332222 2333445556666765554333
No 5
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.03 E-value=5.6e+02 Score=12.95 Aligned_cols=29 Identities=28% Similarity=0.356 Sum_probs=14.9
Q ss_pred CccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 021354 1 MERRKFFREALLLSATVAVECTTVGLNTLFKA 32 (313)
Q Consensus 1 ~~~~~~~~~~~~~l~l~~~~~~~g~~~~~~K~ 32 (313)
|.||.||+ ...+. -+....-|..++++|.
T Consensus 2 mgrrqfmn-lltfg--t~tg~alg~lypvvky 30 (34)
T d2e74d2 2 MGRRQFMN-LLAFG--TVTGVALGALYPLVKY 30 (34)
T ss_dssp HHHHHHHH-HHHHH--HHHHHHHHHHHHHHHH
T ss_pred ccHHHHHH-HHHHh--hHHHHHHhhhhhHHhh
Confidence 34666443 33222 2233455677777776
No 6
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.86 E-value=2.5e+02 Score=21.73 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=28.1
Q ss_pred HHhhccCchhhhhhcchhhHHHHHHHHHHhhhccccc
Q 021354 96 TGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALR 132 (313)
Q Consensus 96 ~gl~~t~a~~as~i~~~~P~~~~ll~~~~~~E~~~~~ 132 (313)
.++...|+..+..+..+.|+... ++|+|-+|.-...
T Consensus 43 taIs~IP~~~G~~L~~L~~ig~~-igWlFA~e~~~a~ 78 (233)
T d1gl4a1 43 TAISTIPETVGYSLLPLAPIGGI-IGWMFAVEQDGFK 78 (233)
T ss_dssp EEEESCCHHHHGGGTTCTHHHHH-HHHHTCEECTTCC
T ss_pred EEccCCChhHhhhhhhhhhhcCc-eeeeEEeecCCcc
Confidence 45677788888899999997765 7899988876544
No 7
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.56 E-value=9.7e+02 Score=14.49 Aligned_cols=22 Identities=18% Similarity=0.141 Sum_probs=15.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHhhc
Q 021354 258 SIVYSAFLGPSFNTIIHTWGLRL 280 (313)
Q Consensus 258 ~ll~lgv~~s~~~~~l~~~~l~~ 280 (313)
.++|. +...+++|.+|.|+-++
T Consensus 44 ~~l~v-~PPfi~~Y~iy~W~~~~ 65 (75)
T d1ppjg_ 44 CILRV-APPFVAFYLVYTWGTQE 65 (75)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHH
T ss_pred hceEE-cCHHHHHHHHHHHHHHH
Confidence 35555 34677889999988753
No 8
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=1.51 E-value=9.8e+02 Score=14.84 Aligned_cols=18 Identities=0% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHHHHHhCCCCHHHHHHH
Q 021354 29 LFKAAASKGLSYYVFVAY 46 (313)
Q Consensus 29 ~~K~~l~~~~~p~~~~~~ 46 (313)
++|-+++++++|-.++-.
T Consensus 33 fsre~iek~IsPEeIV~i 50 (84)
T d1w53a_ 33 FSRKTIEHQIPPEEIISI 50 (84)
T ss_dssp HHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHH
No 9
>d3cx5h1 f.23.13.1 (H:2-94) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=1.42 E-value=1.1e+03 Score=14.99 Aligned_cols=21 Identities=10% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHhhhhHHHHHHHHHHhhc
Q 021354 259 IVYSAFLGPSFNTIIHTWGLRL 280 (313)
Q Consensus 259 ll~lgv~~s~~~~~l~~~~l~~ 280 (313)
++|.+. ..+++|.+|.|+.++
T Consensus 55 ~lyv~P-Pfi~~Y~iy~Wa~~~ 75 (93)
T d3cx5h1 55 FLYVLI-PAGIYWYWWKNGNEY 75 (93)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHH
T ss_pred ceEEcc-hHHHHHHHHHHHHHH
No 10
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=1.35 E-value=9.2e+02 Score=13.10 Aligned_cols=31 Identities=10% Similarity=0.145 Sum_probs=0.0
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021354 185 VSNWVTGGFLLAAQCFLLSIWSILLTQIINI 215 (313)
Q Consensus 185 ~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~ 215 (313)
+..-..|.+..+.+.+.--+..++-|+..++
T Consensus 1 nP~Rv~gll~F~~~v~laQi~LVLKKKQfEK 31 (45)
T d1q90a3 1 NPARIQGLLVFFSFVLLTQVLLVLKKKQFEK 31 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!