Query 021355
Match_columns 313
No_of_seqs 259 out of 1295
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 09:35:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021355.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021355hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.4 2.6E-13 5.7E-18 98.3 5.6 54 122-175 3-59 (60)
2 PF00010 HLH: Helix-loop-helix 99.4 2.3E-13 4.9E-18 97.7 5.0 50 123-172 1-55 (55)
3 smart00353 HLH helix loop heli 99.3 2.1E-12 4.6E-17 91.6 6.1 49 128-176 1-52 (53)
4 KOG1318 Helix loop helix trans 99.2 8.2E-11 1.8E-15 115.1 11.1 62 117-178 227-292 (411)
5 KOG1319 bHLHZip transcription 99.2 4.6E-11 9.9E-16 104.7 6.9 71 119-189 58-135 (229)
6 KOG2483 Upstream transcription 98.5 3.1E-07 6.7E-12 84.4 8.7 67 119-185 55-124 (232)
7 KOG4304 Transcriptional repres 98.4 1.4E-07 3E-12 87.8 3.3 60 120-179 29-96 (250)
8 KOG3561 Aryl-hydrocarbon recep 98.4 3.5E-07 7.5E-12 96.4 5.1 54 121-174 18-75 (803)
9 cd04897 ACT_ACR_3 ACT domain-c 98.3 6.9E-06 1.5E-10 62.9 9.8 68 233-302 3-74 (75)
10 cd04895 ACT_ACR_1 ACT domain-c 98.3 1E-05 2.2E-10 61.5 9.7 67 233-301 3-69 (72)
11 cd04927 ACT_ACR-like_2 Second 98.2 2E-05 4.4E-10 60.1 9.8 67 232-301 1-68 (76)
12 cd04896 ACT_ACR-like_3 ACT dom 98.2 2.5E-05 5.4E-10 59.9 9.7 66 233-301 2-73 (75)
13 KOG3960 Myogenic helix-loop-he 98.1 2.5E-05 5.3E-10 71.9 10.9 67 120-186 115-183 (284)
14 KOG0561 bHLH transcription fac 98.1 1.2E-06 2.6E-11 82.3 2.3 66 120-185 57-124 (373)
15 KOG2588 Predicted DNA-binding 98.1 1.1E-06 2.4E-11 93.0 2.4 65 122-186 275-340 (953)
16 cd04925 ACT_ACR_2 ACT domain-c 98.0 7.7E-05 1.7E-09 56.5 10.1 67 233-301 2-69 (74)
17 cd04900 ACT_UUR-like_1 ACT dom 98.0 9E-05 2E-09 55.7 10.2 69 232-302 2-71 (73)
18 PLN03217 transcription factor 97.8 4.6E-05 1E-09 59.1 6.2 53 136-188 20-78 (93)
19 cd04899 ACT_ACR-UUR-like_2 C-t 97.7 0.00056 1.2E-08 50.2 10.0 67 233-302 2-68 (70)
20 cd04928 ACT_TyrKc Uncharacteri 97.6 0.0006 1.3E-08 51.3 9.4 64 233-300 3-67 (68)
21 PF13740 ACT_6: ACT domain; PD 97.6 0.00069 1.5E-08 51.4 8.8 72 231-307 2-73 (76)
22 cd04926 ACT_ACR_4 C-terminal 97.5 0.0016 3.4E-08 49.0 9.9 66 232-300 2-67 (72)
23 KOG4029 Transcription factor H 97.4 0.00016 3.5E-09 66.4 3.9 61 120-180 106-170 (228)
24 cd04893 ACT_GcvR_1 ACT domains 97.3 0.0032 6.9E-08 48.0 9.6 71 232-307 2-72 (77)
25 cd04869 ACT_GcvR_2 ACT domains 97.2 0.0045 9.8E-08 46.8 9.6 71 234-308 2-78 (81)
26 PRK05007 PII uridylyl-transfer 97.1 0.0024 5.2E-08 69.4 10.4 70 229-300 806-878 (884)
27 cd04872 ACT_1ZPV ACT domain pr 97.1 0.0037 8.1E-08 48.5 8.3 73 232-307 2-74 (88)
28 cd04873 ACT_UUR-ACR-like ACT d 97.1 0.0092 2E-07 43.2 9.9 67 233-302 2-68 (70)
29 PRK00194 hypothetical protein; 97.1 0.0042 9.2E-08 48.2 8.4 74 231-307 3-76 (90)
30 cd04870 ACT_PSP_1 CT domains f 97.0 0.0056 1.2E-07 46.1 8.7 70 234-307 2-71 (75)
31 cd04875 ACT_F4HF-DF N-terminal 97.0 0.0085 1.8E-07 44.8 9.3 70 234-304 2-71 (74)
32 PF01842 ACT: ACT domain; Int 96.8 0.012 2.6E-07 42.1 8.7 38 232-270 1-38 (66)
33 cd04886 ACT_ThrD-II-like C-ter 96.8 0.0062 1.3E-07 44.0 7.1 67 234-308 1-72 (73)
34 PF13291 ACT_4: ACT domain; PD 96.8 0.02 4.3E-07 43.4 10.2 50 232-282 7-58 (80)
35 PRK00275 glnD PII uridylyl-tra 96.8 0.011 2.5E-07 64.3 11.9 73 230-303 813-888 (895)
36 PRK04374 PII uridylyl-transfer 96.7 0.014 3.1E-07 63.4 11.5 69 230-300 795-866 (869)
37 PRK01759 glnD PII uridylyl-tra 96.5 0.014 3E-07 63.4 10.2 70 229-301 781-850 (854)
38 PRK05092 PII uridylyl-transfer 96.4 0.024 5.1E-07 62.1 11.4 72 230-302 842-916 (931)
39 PRK03059 PII uridylyl-transfer 96.4 0.017 3.7E-07 62.7 9.9 49 230-279 785-833 (856)
40 KOG3910 Helix loop helix trans 96.3 0.0025 5.4E-08 63.9 2.9 59 119-177 522-584 (632)
41 cd04894 ACT_ACR-like_1 ACT dom 96.3 0.023 4.9E-07 42.1 7.1 66 233-299 2-67 (69)
42 PRK03381 PII uridylyl-transfer 96.2 0.035 7.5E-07 59.7 10.9 68 230-301 706-773 (774)
43 PRK03381 PII uridylyl-transfer 96.2 0.03 6.5E-07 60.2 10.3 72 229-302 597-668 (774)
44 COG2844 GlnD UTP:GlnB (protein 96.0 0.027 5.9E-07 60.0 8.8 81 220-303 779-860 (867)
45 TIGR01693 UTase_glnD [Protein- 95.9 0.04 8.7E-07 59.7 10.1 69 230-301 778-846 (850)
46 TIGR01693 UTase_glnD [Protein- 95.9 0.056 1.2E-06 58.6 11.0 75 229-304 666-744 (850)
47 cd04883 ACT_AcuB C-terminal AC 95.8 0.091 2E-06 38.4 8.5 66 232-308 2-69 (72)
48 cd04908 ACT_Bt0572_1 N-termina 95.8 0.076 1.6E-06 38.8 8.0 62 233-307 3-64 (66)
49 cd04887 ACT_MalLac-Enz ACT_Mal 95.5 0.087 1.9E-06 38.8 7.5 49 234-283 2-51 (74)
50 cd04909 ACT_PDH-BS C-terminal 95.4 0.11 2.4E-06 37.9 7.7 65 233-307 3-69 (69)
51 KOG4447 Transcription factor T 95.3 0.0085 1.9E-07 51.6 1.5 51 122-172 77-129 (173)
52 PRK01759 glnD PII uridylyl-tra 95.3 0.16 3.6E-06 55.2 11.6 74 229-304 675-752 (854)
53 cd04882 ACT_Bt0572_2 C-termina 95.2 0.093 2E-06 37.4 6.7 61 234-307 2-64 (65)
54 PRK05092 PII uridylyl-transfer 95.1 0.21 4.5E-06 54.9 11.9 73 230-303 731-807 (931)
55 cd04888 ACT_PheB-BS C-terminal 95.0 0.12 2.6E-06 38.2 7.0 49 233-282 2-51 (76)
56 PRK05007 PII uridylyl-transfer 95.0 0.21 4.6E-06 54.5 11.7 73 229-303 699-775 (884)
57 PRK00275 glnD PII uridylyl-tra 94.8 0.19 4.1E-06 55.0 10.5 74 230-304 703-781 (895)
58 PRK04435 hypothetical protein; 94.8 0.18 3.8E-06 43.3 8.3 68 227-297 65-133 (147)
59 PRK04374 PII uridylyl-transfer 94.6 0.19 4.1E-06 54.9 9.9 74 229-303 688-762 (869)
60 cd04877 ACT_TyrR N-terminal AC 94.5 0.16 3.4E-06 37.9 6.5 46 233-282 2-47 (74)
61 PRK06027 purU formyltetrahydro 94.4 0.33 7.2E-06 46.2 10.0 74 231-307 6-81 (286)
62 PRK13010 purU formyltetrahydro 94.3 0.26 5.7E-06 47.0 9.0 74 232-307 10-85 (289)
63 cd04881 ACT_HSDH-Hom ACT_HSDH_ 94.0 0.36 7.8E-06 35.0 7.5 49 232-281 1-51 (79)
64 PRK03059 PII uridylyl-transfer 94.0 0.35 7.5E-06 52.7 10.3 74 229-303 676-752 (856)
65 COG3830 ACT domain-containing 93.9 0.16 3.6E-06 40.2 5.6 74 232-308 4-77 (90)
66 TIGR00655 PurU formyltetrahydr 93.8 0.44 9.5E-06 45.3 9.6 66 233-301 2-69 (280)
67 PRK07334 threonine dehydratase 93.8 0.3 6.5E-06 48.4 8.8 70 230-307 325-399 (403)
68 PRK13011 formyltetrahydrofolat 93.6 0.57 1.2E-05 44.6 9.9 75 231-307 7-81 (286)
69 cd02116 ACT ACT domains are co 93.5 0.52 1.1E-05 30.5 7.0 35 234-269 1-35 (60)
70 cd04880 ACT_AAAH-PDT-like ACT 93.5 0.73 1.6E-05 34.2 8.4 47 235-282 3-50 (75)
71 cd04876 ACT_RelA-SpoT ACT dom 93.4 0.47 1E-05 32.6 6.9 48 234-282 1-49 (71)
72 PRK08577 hypothetical protein; 92.6 0.97 2.1E-05 38.0 8.9 65 230-297 55-121 (136)
73 cd04903 ACT_LSD C-terminal ACT 92.2 1.1 2.4E-05 31.7 7.7 57 234-297 2-60 (71)
74 cd04884 ACT_CBS C-terminal ACT 91.9 1.5 3.2E-05 32.3 8.2 66 234-308 2-70 (72)
75 cd04905 ACT_CM-PDT C-terminal 91.8 2.1 4.5E-05 32.3 9.1 59 234-296 4-63 (80)
76 cd04885 ACT_ThrD-I Tandem C-te 91.5 1.2 2.6E-05 32.7 7.3 65 235-308 2-67 (68)
77 cd04879 ACT_3PGDH-like ACT_3PG 91.5 1.6 3.5E-05 30.7 7.8 44 234-278 2-47 (71)
78 cd04874 ACT_Af1403 N-terminal 91.2 1.2 2.5E-05 31.8 6.9 46 233-281 2-48 (72)
79 PRK11589 gcvR glycine cleavage 91.1 0.65 1.4E-05 41.7 6.5 72 231-307 8-79 (190)
80 cd04878 ACT_AHAS N-terminal AC 90.8 1.6 3.5E-05 30.8 7.3 47 233-280 2-50 (72)
81 KOG3582 Mlx interactors and re 90.7 0.17 3.6E-06 53.1 2.5 70 120-189 648-722 (856)
82 cd04906 ACT_ThrD-I_1 First of 90.0 2.2 4.8E-05 32.8 7.8 68 232-308 2-70 (85)
83 cd04889 ACT_PDH-BS-like C-term 89.9 1.3 2.8E-05 30.9 5.9 45 234-279 1-46 (56)
84 KOG3898 Transcription factor N 89.6 0.2 4.4E-06 46.9 2.0 52 121-172 70-124 (254)
85 PRK06382 threonine dehydratase 89.4 2.6 5.6E-05 41.9 9.8 73 228-308 327-404 (406)
86 PRK08526 threonine dehydratase 89.0 2 4.4E-05 42.8 8.7 76 228-311 323-403 (403)
87 KOG3560 Aryl-hydrocarbon recep 88.8 0.34 7.4E-06 49.6 3.0 39 131-169 33-75 (712)
88 cd04901 ACT_3PGDH C-terminal A 87.9 0.7 1.5E-05 33.2 3.5 46 235-281 3-48 (69)
89 KOG3558 Hypoxia-inducible fact 87.9 0.38 8.1E-06 50.6 2.7 46 124-169 47-96 (768)
90 TIGR01127 ilvA_1Cterm threonin 87.9 3 6.6E-05 40.8 9.0 73 228-308 302-379 (380)
91 cd04931 ACT_PAH ACT domain of 87.8 5.4 0.00012 31.4 8.7 63 232-299 15-78 (90)
92 cd04904 ACT_AAAH ACT domain of 87.5 5.3 0.00011 29.8 8.2 47 235-282 4-51 (74)
93 PRK11589 gcvR glycine cleavage 87.2 4 8.7E-05 36.6 8.6 72 232-307 96-173 (190)
94 PRK08198 threonine dehydratase 86.1 3.8 8.3E-05 40.5 8.7 73 228-308 324-401 (404)
95 KOG4395 Transcription factor A 85.7 1.2 2.5E-05 41.7 4.4 53 121-173 172-227 (285)
96 PRK11152 ilvM acetolactate syn 85.2 7.3 0.00016 29.8 7.9 49 232-281 4-52 (76)
97 PF05088 Bac_GDH: Bacterial NA 84.7 5 0.00011 46.5 9.6 72 230-303 488-564 (1528)
98 PRK10872 relA (p)ppGpp synthet 84.3 6.4 0.00014 42.4 9.8 50 232-282 667-718 (743)
99 CHL00100 ilvH acetohydroxyacid 84.0 5.6 0.00012 35.3 7.8 66 232-300 3-68 (174)
100 KOG3559 Transcriptional regula 83.9 1.1 2.4E-05 44.5 3.7 41 130-170 8-52 (598)
101 PRK06737 acetolactate synthase 83.9 14 0.0003 28.4 8.9 49 232-281 3-51 (76)
102 COG0788 PurU Formyltetrahydrof 83.9 5 0.00011 38.0 7.8 65 231-298 7-73 (287)
103 TIGR00691 spoT_relA (p)ppGpp s 83.6 6.9 0.00015 41.8 9.7 50 232-282 611-661 (683)
104 PF13710 ACT_5: ACT domain; PD 83.6 5.9 0.00013 28.9 6.6 42 240-282 1-42 (63)
105 PRK00227 glnD PII uridylyl-tra 82.9 6.3 0.00014 42.2 9.1 67 232-301 547-614 (693)
106 TIGR00119 acolac_sm acetolacta 82.4 5.5 0.00012 34.7 7.1 46 233-279 3-50 (157)
107 PRK11092 bifunctional (p)ppGpp 82.4 8.3 0.00018 41.3 9.7 50 232-282 627-677 (702)
108 PRK13562 acetolactate synthase 82.1 13 0.00028 29.1 8.3 48 233-281 4-51 (84)
109 cd04929 ACT_TPH ACT domain of 81.7 12 0.00025 28.3 7.8 56 237-298 6-62 (74)
110 PRK11895 ilvH acetolactate syn 80.8 15 0.00032 32.1 9.2 46 233-279 4-51 (161)
111 COG2061 ACT-domain-containing 78.1 11 0.00023 33.0 7.2 68 232-307 6-76 (170)
112 cd04902 ACT_3PGDH-xct C-termin 76.5 8 0.00017 27.7 5.4 44 235-279 3-48 (73)
113 COG4492 PheB ACT domain-contai 75.9 16 0.00035 31.2 7.5 68 227-297 68-136 (150)
114 TIGR02079 THD1 threonine dehyd 72.9 20 0.00042 35.8 8.8 73 228-308 322-396 (409)
115 PRK12483 threonine dehydratase 69.8 36 0.00078 35.3 10.1 73 228-309 342-415 (521)
116 PRK08178 acetolactate synthase 68.4 34 0.00073 27.5 7.5 49 232-281 9-57 (96)
117 PRK08639 threonine dehydratase 68.4 29 0.00063 34.7 8.9 73 228-308 333-407 (420)
118 cd04930 ACT_TH ACT domain of t 66.6 35 0.00075 28.1 7.5 50 233-283 43-93 (115)
119 COG3978 Acetolactate synthase 65.6 39 0.00084 26.4 7.0 46 232-278 4-51 (86)
120 PRK09224 threonine dehydratase 64.4 46 0.00099 34.2 9.6 73 228-309 325-398 (504)
121 COG4747 ACT domain-containing 63.9 42 0.00092 28.2 7.4 62 233-307 5-66 (142)
122 KOG4447 Transcription factor T 62.6 5.7 0.00012 34.5 2.2 42 130-171 29-72 (173)
123 PRK00227 glnD PII uridylyl-tra 59.9 16 0.00034 39.2 5.4 61 232-302 632-692 (693)
124 cd04871 ACT_PSP_2 ACT domains 58.8 14 0.00031 28.4 3.7 69 234-307 2-80 (84)
125 PF06005 DUF904: Protein of un 58.6 21 0.00045 27.1 4.4 26 161-186 13-38 (72)
126 COG3074 Uncharacterized protei 57.6 21 0.00046 27.0 4.2 28 161-188 13-40 (79)
127 COG0317 SpoT Guanosine polypho 55.6 38 0.00083 36.4 7.3 50 232-282 628-678 (701)
128 PRK11899 prephenate dehydratas 55.4 1E+02 0.0022 29.2 9.6 63 233-299 196-259 (279)
129 PLN02550 threonine dehydratase 54.3 49 0.0011 34.9 7.8 71 229-309 415-486 (591)
130 COG2844 GlnD UTP:GlnB (protein 53.3 74 0.0016 34.8 9.0 72 229-302 682-757 (867)
131 TIGR01124 ilvA_2Cterm threonin 51.7 73 0.0016 32.8 8.5 72 228-309 322-394 (499)
132 PRK15422 septal ring assembly 49.5 33 0.00071 26.6 4.2 28 161-188 13-40 (79)
133 KOG3582 Mlx interactors and re 48.9 5.9 0.00013 42.0 0.1 61 121-184 785-850 (856)
134 PF02344 Myc-LZ: Myc leucine z 47.2 22 0.00047 22.8 2.4 17 131-147 13-29 (32)
135 PRK05974 phosphoribosylformylg 46.3 88 0.0019 23.8 6.3 50 245-302 18-68 (80)
136 cd04868 ACT_AK-like ACT domain 45.9 83 0.0018 20.5 6.0 25 241-266 13-37 (60)
137 smart00338 BRLZ basic region l 45.8 33 0.00071 24.9 3.7 24 166-189 26-49 (65)
138 KOG4005 Transcription factor X 44.5 98 0.0021 29.0 7.2 63 118-186 54-117 (292)
139 PF09849 DUF2076: Uncharacteri 43.9 57 0.0012 30.6 5.8 49 135-186 6-75 (247)
140 PF09006 Surfac_D-trimer: Lung 42.7 38 0.00082 23.6 3.3 23 168-190 1-23 (46)
141 cd04892 ACT_AK-like_2 ACT doma 42.5 1E+02 0.0022 20.6 6.0 32 234-266 3-37 (65)
142 cd04922 ACT_AKi-HSDH-ThrA_2 AC 41.9 1.2E+02 0.0025 21.0 6.6 26 240-266 13-38 (66)
143 cd04932 ACT_AKiii-LysC-EC_1 AC 40.7 1.5E+02 0.0033 22.1 8.4 57 239-303 12-68 (75)
144 COG1828 PurS Phosphoribosylfor 40.7 1.3E+02 0.0027 23.6 6.3 49 246-302 20-69 (83)
145 cd04921 ACT_AKi-HSDH-ThrA-like 39.4 1.2E+02 0.0026 22.0 6.1 63 239-306 12-74 (80)
146 PF00585 Thr_dehydrat_C: C-ter 38.7 34 0.00074 26.8 3.0 70 229-309 8-80 (91)
147 PF00170 bZIP_1: bZIP transcri 38.6 52 0.0011 23.7 3.8 21 127-147 13-33 (64)
148 PF09789 DUF2353: Uncharacteri 38.0 1.2E+02 0.0025 29.7 7.0 61 128-188 30-101 (319)
149 PRK14637 hypothetical protein; 37.9 1.7E+02 0.0036 25.3 7.4 59 240-300 6-65 (151)
150 KOG4571 Activating transcripti 37.5 1.8E+02 0.0039 28.0 8.0 59 125-189 220-278 (294)
151 cd04919 ACT_AK-Hom3_2 ACT doma 36.6 1.5E+02 0.0032 20.6 6.5 27 240-267 13-39 (66)
152 PF05687 DUF822: Plant protein 36.5 36 0.00077 29.4 2.9 30 119-148 7-36 (150)
153 COG2716 GcvR Glycine cleavage 36.4 34 0.00073 30.4 2.9 62 232-298 6-67 (176)
154 PF02185 HR1: Hr1 repeat; Int 35.8 1.7E+02 0.0038 21.4 6.9 48 138-189 16-63 (70)
155 PF08826 DMPK_coil: DMPK coile 35.8 84 0.0018 23.1 4.4 53 130-187 8-60 (61)
156 PF13840 ACT_7: ACT domain ; P 35.8 73 0.0016 23.0 4.2 34 230-264 5-42 (65)
157 PF02120 Flg_hook: Flagellar h 35.5 1.7E+02 0.0036 21.7 6.4 46 221-268 28-79 (85)
158 PRK11898 prephenate dehydratas 34.8 2.2E+02 0.0047 27.0 8.3 62 233-298 198-261 (283)
159 PRK15385 magnesium transport p 33.5 3.1E+02 0.0067 25.4 8.8 50 231-281 142-195 (225)
160 cd04912 ACT_AKiii-LysC-EC-like 33.0 2E+02 0.0043 21.1 7.6 25 239-264 12-36 (75)
161 PRK10622 pheA bifunctional cho 32.2 2.7E+02 0.0058 27.7 8.8 60 236-299 302-362 (386)
162 COG4747 ACT domain-containing 31.4 2.6E+02 0.0056 23.6 7.1 63 233-309 71-135 (142)
163 cd04890 ACT_AK-like_1 ACT doma 30.4 1.9E+02 0.004 20.0 6.0 24 240-264 12-35 (62)
164 COG0077 PheA Prephenate dehydr 29.8 4.1E+02 0.0088 25.4 9.2 62 233-298 196-258 (279)
165 TIGR01834 PHA_synth_III_E poly 28.9 1.2E+02 0.0027 29.5 5.6 28 161-188 291-318 (320)
166 TIGR01268 Phe4hydrox_tetr phen 28.6 3.5E+02 0.0075 27.6 8.9 50 233-283 18-68 (436)
167 TIGR01270 Trp_5_monoox tryptop 28.4 2.7E+02 0.0059 28.6 8.1 49 233-282 33-83 (464)
168 PF13805 Pil1: Eisosome compon 27.9 1.7E+02 0.0038 27.8 6.3 27 127-153 139-165 (271)
169 cd04937 ACT_AKi-DapG-BS_2 ACT 27.9 2.2E+02 0.0048 20.0 6.3 23 240-263 13-35 (64)
170 PF11619 P53_C: Transcription 27.9 79 0.0017 23.7 3.1 36 220-255 5-40 (71)
171 cd04916 ACT_AKiii-YclM-BS_2 AC 27.7 2.1E+02 0.0045 19.7 7.4 25 240-265 13-37 (66)
172 PF02700 PurS: Phosphoribosylf 27.6 1.6E+02 0.0035 22.6 5.0 50 245-302 18-68 (80)
173 PF10393 Matrilin_ccoil: Trime 27.5 1.6E+02 0.0035 20.5 4.5 30 159-188 16-45 (47)
174 PHA03386 P10 fibrous body prot 27.3 1.3E+02 0.0029 24.0 4.5 32 155-186 1-32 (94)
175 PF07716 bZIP_2: Basic region 27.2 1.1E+02 0.0024 21.3 3.8 19 167-185 26-44 (54)
176 COG1707 ACT domain-containing 27.1 1.9E+02 0.004 25.9 5.9 62 233-298 4-65 (218)
177 PF04420 CHD5: CHD5-like prote 27.0 1.4E+02 0.003 25.9 5.2 51 128-189 39-89 (161)
178 PF10224 DUF2205: Predicted co 26.9 3E+02 0.0065 21.3 6.5 46 130-187 13-58 (80)
179 PF14197 Cep57_CLD_2: Centroso 26.7 1.2E+02 0.0027 22.6 4.1 29 158-186 39-67 (69)
180 PLN02317 arogenate dehydratase 26.6 3.1E+02 0.0066 27.5 8.0 49 234-283 286-349 (382)
181 PLN02678 seryl-tRNA synthetase 26.3 4.2E+02 0.0091 27.0 9.1 28 162-189 74-101 (448)
182 TIGR00986 3a0801s05tom22 mitoc 26.0 41 0.00088 29.0 1.6 18 137-154 50-67 (145)
183 cd04918 ACT_AK1-AT_2 ACT domai 25.4 2.1E+02 0.0046 20.3 5.2 29 240-269 12-40 (65)
184 PF06305 DUF1049: Protein of u 24.8 66 0.0014 23.2 2.3 18 171-188 46-63 (68)
185 PRK14646 hypothetical protein; 24.0 3.5E+02 0.0076 23.3 7.1 55 245-301 10-67 (155)
186 PRK14638 hypothetical protein; 23.7 2.7E+02 0.0058 23.9 6.2 54 248-302 14-68 (150)
187 PLN02705 beta-amylase 23.2 3.3E+02 0.0071 29.1 7.7 29 120-148 81-109 (681)
188 PF07544 Med9: RNA polymerase 23.0 2.9E+02 0.0062 21.2 5.7 49 137-187 32-80 (83)
189 PF11336 DUF3138: Protein of u 22.9 96 0.0021 31.5 3.7 68 232-301 171-240 (514)
190 PRK14639 hypothetical protein; 22.9 2.7E+02 0.0059 23.6 6.1 53 248-302 3-56 (140)
191 PF08317 Spc7: Spc7 kinetochor 22.8 2.7E+02 0.0058 26.8 6.8 21 244-264 280-300 (325)
192 COG2716 GcvR Glycine cleavage 22.6 2.7E+02 0.0058 24.9 6.0 65 231-299 92-162 (176)
193 PF15392 Joubert: Joubert synd 22.2 1.9E+02 0.0041 28.2 5.4 59 119-177 52-115 (329)
194 PF01545 Cation_efflux: Cation 22.1 3.3E+02 0.007 24.9 7.0 62 242-303 204-267 (284)
195 PF09383 NIL: NIL domain; Int 21.8 3.3E+02 0.0071 19.9 9.6 40 242-283 16-55 (76)
196 COG1076 DjlA DnaJ-domain-conta 21.7 63 0.0014 28.2 2.0 57 127-184 116-172 (174)
197 PRK14645 hypothetical protein; 21.6 4.4E+02 0.0094 22.8 7.2 57 244-301 11-69 (154)
198 PF14992 TMCO5: TMCO5 family 21.6 1.4E+02 0.0031 28.5 4.4 27 159-185 144-170 (280)
199 PF13870 DUF4201: Domain of un 21.6 5.3E+02 0.011 22.2 8.1 61 127-188 113-174 (177)
200 PF01166 TSC22: TSC-22/dip/bun 21.0 1.9E+02 0.004 21.2 3.9 24 166-189 21-44 (59)
201 PF02370 M: M protein repeat; 20.6 1.8E+02 0.004 16.9 3.1 17 169-185 4-20 (21)
202 COG0013 AlaS Alanyl-tRNA synth 20.5 1.2E+03 0.026 26.0 15.0 76 227-304 772-847 (879)
203 PF07334 IFP_35_N: Interferon- 20.1 1.8E+02 0.0039 22.4 3.9 28 161-188 2-29 (76)
204 PF14689 SPOB_a: Sensor_kinase 20.0 3.4E+02 0.0074 19.5 5.4 40 132-178 17-56 (62)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.42 E-value=2.6e-13 Score=98.27 Aligned_cols=54 Identities=33% Similarity=0.608 Sum_probs=50.7
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHH
Q 021355 122 ADRSRTLVSERKRRGKMKEKLYGLRALVPNI---SKMDKASIIGDAVSYLQELQMQV 175 (313)
Q Consensus 122 ~~r~~h~~~Er~RR~~in~~~~~LrslvP~~---~k~dkasiL~~Ai~YI~~Lq~~~ 175 (313)
..+..|+.+||+||++||..|..|+++||.. .|++|++||..||+||+.|+.++
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999997 89999999999999999999875
No 2
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.41 E-value=2.3e-13 Score=97.69 Aligned_cols=50 Identities=36% Similarity=0.637 Sum_probs=47.0
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhccCCCC-----CCCChhhHHHHHHHHHHHHH
Q 021355 123 DRSRTLVSERKRRGKMKEKLYGLRALVPNI-----SKMDKASIIGDAVSYLQELQ 172 (313)
Q Consensus 123 ~r~~h~~~Er~RR~~in~~~~~LrslvP~~-----~k~dkasiL~~Ai~YI~~Lq 172 (313)
+|..|+..||+||++||+.|..|+.+||.. .|++|++||..||+||++||
T Consensus 1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 467899999999999999999999999986 68999999999999999997
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.34 E-value=2.1e-12 Score=91.56 Aligned_cols=49 Identities=37% Similarity=0.594 Sum_probs=45.2
Q ss_pred cHHHHHHHHHHHHHHHHHhccCCC---CCCCChhhHHHHHHHHHHHHHHHHH
Q 021355 128 LVSERKRRGKMKEKLYGLRALVPN---ISKMDKASIIGDAVSYLQELQMQVR 176 (313)
Q Consensus 128 ~~~Er~RR~~in~~~~~LrslvP~---~~k~dkasiL~~Ai~YI~~Lq~~~~ 176 (313)
+..||+||++||+.|..|+++||. ..|++|++||..||+||++|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 367999999999999999999995 6799999999999999999998875
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.21 E-value=8.2e-11 Score=115.07 Aligned_cols=62 Identities=24% Similarity=0.479 Sum_probs=55.7
Q ss_pred ccccccccccccHHHHHHHHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHHHHHHH
Q 021355 117 TRNKKADRSRTLVSERKRRGKMKEKLYGLRALVPNI----SKMDKASIIGDAVSYLQELQMQVRKL 178 (313)
Q Consensus 117 ~~~~~~~r~~h~~~Er~RR~~in~~~~~LrslvP~~----~k~dkasiL~~Ai~YI~~Lq~~~~~L 178 (313)
..+.+.+|..|+++|||||++||+++.+|..|||.+ .|..|..||..+++||+.||+..++.
T Consensus 227 ~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~ 292 (411)
T KOG1318|consen 227 LERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRA 292 (411)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 456678899999999999999999999999999997 37789999999999999998887744
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=99.18 E-value=4.6e-11 Score=104.73 Aligned_cols=71 Identities=30% Similarity=0.456 Sum_probs=63.6
Q ss_pred ccccccccccHHHHHHHHHHHHHHHHHhccCCCC-------CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021355 119 NKKADRSRTLVSERKRRGKMKEKLYGLRALVPNI-------SKMDKASIIGDAVSYLQELQMQVRKLKAEIASLEYSM 189 (313)
Q Consensus 119 ~~~~~r~~h~~~Er~RR~~in~~~~~LrslvP~~-------~k~dkasiL~~Ai~YI~~Lq~~~~~L~~~~~~l~~~~ 189 (313)
.+.++|..|..+||+||+.||..+..|+.|||.+ .|++||.||.++|+||.+|++++.+.+++...|++.+
T Consensus 58 yk~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~v 135 (229)
T KOG1319|consen 58 YKDRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDV 135 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999999974 3788999999999999999999999999998887654
No 6
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.54 E-value=3.1e-07 Score=84.39 Aligned_cols=67 Identities=22% Similarity=0.367 Sum_probs=55.7
Q ss_pred ccccccccccHHHHHHHHHHHHHHHHHhccCCCC--CCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021355 119 NKKADRSRTLVSERKRRGKMKEKLYGLRALVPNI--SKMD-KASIIGDAVSYLQELQMQVRKLKAEIASL 185 (313)
Q Consensus 119 ~~~~~r~~h~~~Er~RR~~in~~~~~LrslvP~~--~k~d-kasiL~~Ai~YI~~Lq~~~~~L~~~~~~l 185 (313)
.....|..|+..||+||+.|++.|..|+.+||.. .+.. .++||.+|.+||+.|+.+..+.+..++.|
T Consensus 55 ~~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l 124 (232)
T KOG2483|consen 55 SAASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDL 124 (232)
T ss_pred CCCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 4456789999999999999999999999999984 3333 69999999999999987776666555554
No 7
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.42 E-value=1.4e-07 Score=87.79 Aligned_cols=60 Identities=30% Similarity=0.450 Sum_probs=51.4
Q ss_pred cccccccccHHHHHHHHHHHHHHHHHhccCCC--------CCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 021355 120 KKADRSRTLVSERKRRGKMKEKLYGLRALVPN--------ISKMDKASIIGDAVSYLQELQMQVRKLK 179 (313)
Q Consensus 120 ~~~~r~~h~~~Er~RR~~in~~~~~LrslvP~--------~~k~dkasiL~~Ai~YI~~Lq~~~~~L~ 179 (313)
...++..|-+.|||||+|||+.+.+|+.|||. ..|++||.||+-|++|++.||...+.-.
T Consensus 29 ~~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~~~ 96 (250)
T KOG4304|consen 29 RQYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQAAA 96 (250)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccccc
Confidence 34567778999999999999999999999995 2688999999999999999987655443
No 8
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.37 E-value=3.5e-07 Score=96.43 Aligned_cols=54 Identities=28% Similarity=0.392 Sum_probs=49.5
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHHH
Q 021355 121 KADRSRTLVSERKRRGKMKEKLYGLRALVPNI----SKMDKASIIGDAVSYLQELQMQ 174 (313)
Q Consensus 121 ~~~r~~h~~~Er~RR~~in~~~~~LrslvP~~----~k~dkasiL~~Ai~YI~~Lq~~ 174 (313)
+..|..|+.+|||||++||..+.+|.+|||.+ -|+||.+||..||.+||.++..
T Consensus 18 r~~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 18 RKKRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred hhccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 44599999999999999999999999999986 4999999999999999988774
No 9
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.31 E-value=6.9e-06 Score=62.95 Aligned_cols=68 Identities=9% Similarity=0.126 Sum_probs=56.1
Q ss_pred EEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCC----hHHHHHHHHHHHhc
Q 021355 233 YLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMN----LPNLRLWVTGALLN 302 (313)
Q Consensus 233 ~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~----~~~Lk~~v~~al~~ 302 (313)
+|+|.|.+|||+|.+|..+|-.+ |+.|.+|.|+|.|+++.-+|.+.-.+| ..+. ...|++.+.+||..
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~-~l~I~~A~I~T~gera~D~FyV~d~~g-~kl~~~~~~~~l~~~L~~al~~ 74 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDM-DYVVFHATIDTDGDDAHQEYYIRHKDG-RTLSTEGERQRVIKCLEAAIER 74 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhC-CeEEEEEEEeecCceEEEEEEEEcCCC-CccCCHHHHHHHHHHHHHHHhc
Confidence 67999999999999999999999 899999999999999999999976655 3333 34566666666543
No 10
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.26 E-value=1e-05 Score=61.53 Aligned_cols=67 Identities=12% Similarity=0.205 Sum_probs=56.2
Q ss_pred EEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHh
Q 021355 233 YLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALL 301 (313)
Q Consensus 233 ~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~ 301 (313)
+|+|.+.+|||+|.+|.++|..+ |++|..|.|+|.|+++.-+|.+.-.+| ..+.-++..+.|+.+|.
T Consensus 3 viev~a~DRpGLL~~i~~~l~~~-gl~I~~AkIsT~Gerv~DvFyV~d~~g-~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 3 LVKVDSARKPGILLEAVQVLTDL-DLCITKAYISSDGGWFMDVFHVTDQLG-NKLTDDSLIAYIEKSLG 69 (72)
T ss_pred EEEEEECCcCCHHHHHHHHHHHC-CcEEEEEEEeecCCeEEEEEEEECCCC-CCCCCHHHHHHHHHHhc
Confidence 68999999999999999999999 999999999999999999999875544 34444555667777664
No 11
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.17 E-value=2e-05 Score=60.13 Aligned_cols=67 Identities=18% Similarity=0.198 Sum_probs=52.5
Q ss_pred EEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeee-cCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHh
Q 021355 232 FYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFAT-EPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALL 301 (313)
Q Consensus 232 ~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist-~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~ 301 (313)
++++|.|++++|+|+++..+|..+ |++|+.|.+.| .++.++-+|.+.-.++. ...+...+.|+++|.
T Consensus 1 ~~~ei~~~Dr~gLfa~i~~~l~~~-~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~--~~~~~~~~~l~~~L~ 68 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYEL-ELTIERVKVSTTPDGRVLDLFFITDAREL--LHTKKRREETYDYLR 68 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHC-CCeEEEEEEEECCCCEEEEEEEEeCCCCC--CCCHHHHHHHHHHHH
Confidence 368999999999999999999999 89999999996 88999999988533332 333444455555554
No 12
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.15 E-value=2.5e-05 Score=59.88 Aligned_cols=66 Identities=12% Similarity=0.201 Sum_probs=54.2
Q ss_pred EEEEEecCCCCHHHHHHHHHHccCCceEEEEEee--ecCCeEEEEEEEEeeCCCccC----ChHHHHHHHHHHHh
Q 021355 233 YLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFA--TEPERLVLTFNLNVKDCEQNM----NLPNLRLWVTGALL 301 (313)
Q Consensus 233 ~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~is--t~~~~~~~t~~~kv~~~~~~i----~~~~Lk~~v~~al~ 301 (313)
+|+|.|.+|||+|.+|.++|..+ |++|..|.|+ |.|+++.-+|.+. .++.. + ....|++++..+|.
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~-~l~i~~AkI~~~T~Gerv~D~Fyv~-~~g~k-l~d~~~~~~L~~~L~~~l~ 73 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDC-NIQISYGRFSSKVKGYREVDLFIVQ-SDGKK-IMDPKKQAALCARLREEMV 73 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHC-CeEEEEEEEecCcccCEEEEEEEEe-CCCCc-cCCHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999 8999999999 9999999999983 33322 3 24566666666664
No 13
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=98.13 E-value=2.5e-05 Score=71.92 Aligned_cols=67 Identities=24% Similarity=0.356 Sum_probs=56.1
Q ss_pred cccccccccHHHHHHHHHHHHHHHHH-hccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021355 120 KKADRSRTLVSERKRRGKMKEKLYGL-RALVPNI-SKMDKASIIGDAVSYLQELQMQVRKLKAEIASLE 186 (313)
Q Consensus 120 ~~~~r~~h~~~Er~RR~~in~~~~~L-rslvP~~-~k~dkasiL~~Ai~YI~~Lq~~~~~L~~~~~~l~ 186 (313)
+-.+|..-.+.||+|=.|+|+.|.+| |...++. .+.-|+.||..||+||..||.-++++-+....++
T Consensus 115 svDRRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~~~~ 183 (284)
T KOG3960|consen 115 SVDRRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEKGLA 183 (284)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccchhhh
Confidence 34567778899999999999999999 5567764 6789999999999999999999888877665554
No 14
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=98.12 E-value=1.2e-06 Score=82.31 Aligned_cols=66 Identities=26% Similarity=0.425 Sum_probs=56.8
Q ss_pred cccccccccHHHHHHHHHHHHHHHHHhccCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021355 120 KKADRSRTLVSERKRRGKMKEKLYGLRALVPN--ISKMDKASIIGDAVSYLQELQMQVRKLKAEIASL 185 (313)
Q Consensus 120 ~~~~r~~h~~~Er~RR~~in~~~~~LrslvP~--~~k~dkasiL~~Ai~YI~~Lq~~~~~L~~~~~~l 185 (313)
++-+|..-|.-||+|=.-||..|..||+|+|. ..|.+||.||+.+.+||.+|+++..+|-.++.+|
T Consensus 57 rRmRReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ll~qn~el 124 (373)
T KOG0561|consen 57 RRMRREIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTELLPQNGEL 124 (373)
T ss_pred HHHHHHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcccccccccchH
Confidence 34667778889999999999999999999997 6899999999999999999998877765544444
No 15
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.12 E-value=1.1e-06 Score=93.03 Aligned_cols=65 Identities=32% Similarity=0.549 Sum_probs=60.9
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhccCCC-CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021355 122 ADRSRTLVSERKRRGKMKEKLYGLRALVPN-ISKMDKASIIGDAVSYLQELQMQVRKLKAEIASLE 186 (313)
Q Consensus 122 ~~r~~h~~~Er~RR~~in~~~~~LrslvP~-~~k~dkasiL~~Ai~YI~~Lq~~~~~L~~~~~~l~ 186 (313)
.+|.+||++|||.|..||+++.+|+.+||+ ..|+.|.++|..||+||++|+...+.++.+++.++
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence 668999999999999999999999999998 47999999999999999999999999998888776
No 16
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.01 E-value=7.7e-05 Score=56.47 Aligned_cols=67 Identities=15% Similarity=0.157 Sum_probs=51.9
Q ss_pred EEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeC-CCccCChHHHHHHHHHHHh
Q 021355 233 YLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKD-CEQNMNLPNLRLWVTGALL 301 (313)
Q Consensus 233 ~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~-~~~~i~~~~Lk~~v~~al~ 301 (313)
+|+|.+.++||+|.+|..+|..+ |++|+.|.+.+.++.+.-+|.+.-.+ +.. +..++..+.|+++|.
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~-~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~-~~~~~~~~~i~~~L~ 69 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADL-HCNVVEARAWTHNGRLACVIYVRDEETGAP-IDDPIRLASIEDRLD 69 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHC-CCcEEEEEEEEECCEEEEEEEEEcCcCCCC-CCCHHHHHHHHHHHH
Confidence 57899999999999999999999 89999999999999999999876433 322 333333445555443
No 17
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.00 E-value=9e-05 Score=55.74 Aligned_cols=69 Identities=14% Similarity=0.109 Sum_probs=53.1
Q ss_pred EEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeec-CCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhc
Q 021355 232 FYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATE-PERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLN 302 (313)
Q Consensus 232 ~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~-~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~ 302 (313)
..|.|.|.+++|+|.+|..+|..+ |++|+.|.+.|. ++.++-+|.+.-.++ ..+..+...+.|+.+|.+
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~-~l~I~~A~i~T~~~~~v~D~F~v~~~~~-~~~~~~~~~~~l~~~L~~ 71 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQL-GLNILDARIFTTRDGYALDTFVVLDPDG-EPIGERERLARIREALED 71 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHC-CCCeEEeEEEEeCCCeEEEEEEEECCCC-CCCChHHHHHHHHHHHHh
Confidence 357899999999999999999999 899999999888 588888888763333 334444555566666643
No 18
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.84 E-value=4.6e-05 Score=59.12 Aligned_cols=53 Identities=21% Similarity=0.491 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhccCCCC------CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021355 136 GKMKEKLYGLRALVPNI------SKMDKASIIGDAVSYLQELQMQVRKLKAEIASLEYS 188 (313)
Q Consensus 136 ~~in~~~~~LrslvP~~------~k~dkasiL~~Ai~YI~~Lq~~~~~L~~~~~~l~~~ 188 (313)
++|++.+..|+.|+|.. .|.+.+-+|++++.||+.|+.++..|.+++.+|-..
T Consensus 20 dqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~t 78 (93)
T PLN03217 20 DQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLAN 78 (93)
T ss_pred HHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 78999999999999963 455667799999999999999999999999998654
No 19
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.70 E-value=0.00056 Score=50.18 Aligned_cols=67 Identities=19% Similarity=0.225 Sum_probs=53.9
Q ss_pred EEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhc
Q 021355 233 YLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLN 302 (313)
Q Consensus 233 ~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~ 302 (313)
.|.|.+..++|+|.+|+.+|.++ +++|.++.+.+.++.+...|.+.-.++.. .+. ...+.|+++|.+
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~-~~~I~~~~~~~~~~~~~~~f~i~~~~~~~-~~~-~~~~~i~~~l~~ 68 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAEL-GLNIHSAKIATLGERAEDVFYVTDADGQP-LDP-ERQEALRAALGE 68 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHC-CCeEEEEEEEecCCEEEEEEEEECCCCCc-CCH-HHHHHHHHHHHh
Confidence 57889999999999999999999 89999999999888888888887665544 444 344456666654
No 20
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.64 E-value=0.0006 Score=51.28 Aligned_cols=64 Identities=8% Similarity=0.024 Sum_probs=51.5
Q ss_pred EEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC-CeEEEEEEEEeeCCCccCChHHHHHHHHHHH
Q 021355 233 YLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP-ERLVLTFNLNVKDCEQNMNLPNLRLWVTGAL 300 (313)
Q Consensus 233 ~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~-~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al 300 (313)
.|-|.|+.++|+|++|..+|..+ |++|+.|.+.+.. |.++-+|.+.-.+++ +...|.+++..||
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~-~LnI~~A~i~tt~dG~~LDtF~V~d~~~~---~~~~~~~~~~~~~ 67 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDL-GLNIAEAHAFSTDDGLALDIFVVTGWKRG---ETAALGHALQKEI 67 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHC-CCceEEEEEEEcCCCeEEEEEEEecCCcc---chHHHHHHHHHhh
Confidence 46788999999999999999999 8999999997665 677777877644443 4467778887775
No 21
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.55 E-value=0.00069 Score=51.43 Aligned_cols=72 Identities=15% Similarity=0.263 Sum_probs=59.1
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCCcc
Q 021355 231 RFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGFDV 307 (313)
Q Consensus 231 ~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~~~ 307 (313)
.++|.+.+++|||++..|.++|.+. |.+++.++.++.++.|...+.+.+.. . +...|+..+..+-.+.|.++
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~-g~ni~d~~~~~~~~~f~~~~~v~~~~---~-~~~~l~~~L~~l~~~~~l~v 73 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEH-GCNIEDSRQAVLGGRFTLIMLVSIPE---D-SLERLESALEELAEELGLDV 73 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCT-T-EEEEEEEEEETTEEEEEEEEEESH---H-HHHHHHHHHHHHHHHTT-EE
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHC-CCcEEEEEEEEEcCeEEEEEEEEeCc---c-cHHHHHHHHHHHHHHCCcEE
Confidence 3689999999999999999999999 89999999999999998888877762 2 67888888888888887765
No 22
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.48 E-value=0.0016 Score=48.97 Aligned_cols=66 Identities=12% Similarity=0.128 Sum_probs=50.2
Q ss_pred EEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHH
Q 021355 232 FYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGAL 300 (313)
Q Consensus 232 ~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al 300 (313)
..|.|.++.++|+|.+|..+|.++ |++|+++.+.+.++..+.+|++.-.++.. ++. +..+.|+++|
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~-~lnI~sa~i~t~~~~~~d~f~v~~~~~~~-~~~-~~~~~l~~~l 67 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFREN-GLTVTRAEISTQGDMAVNVFYVTDANGNP-VDP-KTIEAVRQEI 67 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHC-CcEEEEEEEecCCCeEEEEEEEECCCCCc-CCH-HHHHHHHHHh
Confidence 356788999999999999999999 89999999998888777777775333322 343 4445566665
No 23
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.37 E-value=0.00016 Score=66.39 Aligned_cols=61 Identities=28% Similarity=0.363 Sum_probs=52.0
Q ss_pred cccccccccHHHHHHHHHHHHHHHHHhccCCC----CCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 021355 120 KKADRSRTLVSERKRRGKMKEKLYGLRALVPN----ISKMDKASIIGDAVSYLQELQMQVRKLKA 180 (313)
Q Consensus 120 ~~~~r~~h~~~Er~RR~~in~~~~~LrslvP~----~~k~dkasiL~~Ai~YI~~Lq~~~~~L~~ 180 (313)
....+..++.+||+|=..+|..|..||.+||. ..|.+|..+|.-||.||++|+.-++.-..
T Consensus 106 ~~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~ 170 (228)
T KOG4029|consen 106 TSAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEA 170 (228)
T ss_pred hhhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhccccc
Confidence 34566778888999999999999999999996 45789999999999999999877665543
No 24
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=97.28 E-value=0.0032 Score=47.95 Aligned_cols=71 Identities=11% Similarity=0.145 Sum_probs=58.8
Q ss_pred EEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCCcc
Q 021355 232 FYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGFDV 307 (313)
Q Consensus 232 ~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~~~ 307 (313)
+.|.+.|++++|+..+|.+.|.+. |.+++.++....++.|.+.+.+.+. ..+...|+..+...-..-|.++
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~-g~nI~d~~q~~~~~~F~m~~~~~~~----~~~~~~l~~~l~~~~~~~~l~i 72 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSES-GCNILDSRMAILGTEFALTMLVEGS----WDAIAKLEAALPGLARRLDLTL 72 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHc-CCCEEEceeeEEcCEEEEEEEEEec----cccHHHHHHHHHHHHHHcCCEE
Confidence 578999999999999999999999 9999999999999999777776654 2477888888888555545543
No 25
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.19 E-value=0.0045 Score=46.78 Aligned_cols=71 Identities=13% Similarity=0.172 Sum_probs=58.4
Q ss_pred EEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC------CeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCCcc
Q 021355 234 LRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP------ERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGFDV 307 (313)
Q Consensus 234 I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~------~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~~~ 307 (313)
|.|.|.+++|++.+|.+.|.+. |++|...+..+.+ +.+...+.+.+. ...+...|+..+...-.+-|.++
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~-~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p---~~~~~~~l~~~l~~l~~~~~~~~ 77 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQR-NINIEDLSTETYSAPMSGTPLFKAQATLALP---AGTDLDALREELEELCDDLNVDI 77 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHc-CCCeEEeEeeeecCCCCCcceEEEEEEEecC---CCCCHHHHHHHHHHHHHHhcceE
Confidence 6789999999999999999999 8999999998877 566666665554 24689999999999777777665
Q ss_pred c
Q 021355 308 V 308 (313)
Q Consensus 308 ~ 308 (313)
.
T Consensus 78 ~ 78 (81)
T cd04869 78 S 78 (81)
T ss_pred E
Confidence 3
No 26
>PRK05007 PII uridylyl-transferase; Provisional
Probab=97.14 E-value=0.0024 Score=69.43 Aligned_cols=70 Identities=27% Similarity=0.368 Sum_probs=56.2
Q ss_pred CceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCC---hHHHHHHHHHHH
Q 021355 229 ERRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMN---LPNLRLWVTGAL 300 (313)
Q Consensus 229 ~~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~---~~~Lk~~v~~al 300 (313)
+.-..|+|.|.+|||+|.+|.++|.++ |++|.+|-|+|.|+++.-+|.+.-..| ..++ ...|+++|..+|
T Consensus 806 ~~~TvlEV~a~DRpGLL~~I~~~l~~~-~l~I~~AkI~T~gera~DvFyV~~~~g-~~l~~~~~~~l~~~L~~~l 878 (884)
T PRK05007 806 DRRSYMELIALDQPGLLARVGKIFADL-GISLHGARITTIGERVEDLFILATADR-RALNEELQQELRQRLTEAL 878 (884)
T ss_pred CCeEEEEEEeCCchHHHHHHHHHHHHC-CcEEEEEEEeccCceEEEEEEEEcCCC-CcCCHHHHHHHHHHHHHHH
Confidence 344789999999999999999999999 899999999999999999999864443 3345 344555555554
No 27
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.07 E-value=0.0037 Score=48.53 Aligned_cols=73 Identities=10% Similarity=0.218 Sum_probs=60.9
Q ss_pred EEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCCcc
Q 021355 232 FYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGFDV 307 (313)
Q Consensus 232 ~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~~~ 307 (313)
+.|.+.|+++||++.+|.+.|-+. |++++.++..+.++.+...+.+.+.. ...+...|+..+......-|.++
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~-g~nI~~~~~~~~~~~f~~~~~v~~~~--~~~~~~~L~~~l~~l~~~~~l~~ 74 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAEL-NVNILDISQTIMDGYFTMIMIVDISE--SNLDFAELQEELEELGKELGVKI 74 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHc-CCCEEechhHhhCCccEEEEEEEeCC--CCCCHHHHHHHHHHHHHHcCCEE
Confidence 578999999999999999999999 89999999988888887777666542 25678999999998776666654
No 28
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=97.06 E-value=0.0092 Score=43.20 Aligned_cols=67 Identities=16% Similarity=0.298 Sum_probs=50.1
Q ss_pred EEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhc
Q 021355 233 YLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLN 302 (313)
Q Consensus 233 ~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~ 302 (313)
.|.|.|..++|+|.+|+.+|.+. +++|.++.+.+.++.....|++.-.++.. .. ++..+.|+.+|.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~-~~~I~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~~~~~~l~~~l~~ 68 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADL-GLNIHDARISTTGERALDVFYVTDSDGRP-LD-PERIARLEEALED 68 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHC-CCeEEEEEEeecCCEEEEEEEEECCCCCc-CC-HHHHHHHHHHHHh
Confidence 46789999999999999999999 89999999988877666667665544332 22 3455556666643
No 29
>PRK00194 hypothetical protein; Validated
Probab=97.05 E-value=0.0042 Score=48.23 Aligned_cols=74 Identities=7% Similarity=0.198 Sum_probs=60.8
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCCcc
Q 021355 231 RFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGFDV 307 (313)
Q Consensus 231 ~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~~~ 307 (313)
.+.|.|.|+++||++.+|.+.|-+. |++|+..+..+.++.+...+.+.... ...+...|+..+...-...|.++
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~-g~nI~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~l~~l~~~~~~~~ 76 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAEL-NVNILDISQTIMDGYFTMIMLVDISE--SKKDFAELKEELEELGKELGVKI 76 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHc-CCCEEehhhHhhCCeeEEEEEEEecC--CCCCHHHHHHHHHHHHHHcCCEE
Confidence 3678999999999999999999999 99999999888888777776666542 24567899999988776767654
No 30
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.03 E-value=0.0056 Score=46.11 Aligned_cols=70 Identities=16% Similarity=0.170 Sum_probs=60.2
Q ss_pred EEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCCcc
Q 021355 234 LRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGFDV 307 (313)
Q Consensus 234 I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~~~ 307 (313)
|.|.+.+|||+..++.++|.++ |+++...+.++.++.|...+.+.+.. +.+...|+..+.......|.++
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~-~~nI~dl~~~~~~~~f~~~~~v~~p~---~~~~~~l~~~l~~l~~~l~l~i 71 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAH-GVRILDVGQAVIHGRLSLGILVQIPD---SADSEALLKDLLFKAHELGLQV 71 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHC-CCCEEecccEEEcCeeEEEEEEEcCC---CCCHHHHHHHHHHHHHHcCceE
Confidence 6788999999999999999999 89999999888888887777766543 3678999999999888877764
No 31
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.99 E-value=0.0085 Score=44.83 Aligned_cols=70 Identities=9% Similarity=0.047 Sum_probs=50.7
Q ss_pred EEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCC
Q 021355 234 LRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQG 304 (313)
Q Consensus 234 I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~ 304 (313)
|.|.|++++|++.+|.+.|-+. |++++.++..+..+...+.+.+++......++...|+..+.....+-+
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~-g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~ 71 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEH-GGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVAAEFD 71 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHc-CCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHcC
Confidence 6899999999999999999999 899999988753322223334444322223678899988887664433
No 32
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=96.84 E-value=0.012 Score=42.08 Aligned_cols=38 Identities=8% Similarity=0.351 Sum_probs=35.1
Q ss_pred EEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCC
Q 021355 232 FYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPE 270 (313)
Q Consensus 232 ~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~ 270 (313)
+.|.|.|+.+||+|.+|..+|.++ |++|.++...+.++
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~-~inI~~~~~~~~~~ 38 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADH-GINIDSISQSSDKD 38 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHT-TEEEEEEEEEEESS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc-CCCHHHeEEEecCC
Confidence 367899999999999999999999 89999999988886
No 33
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.82 E-value=0.0062 Score=43.99 Aligned_cols=67 Identities=15% Similarity=0.240 Sum_probs=49.9
Q ss_pred EEEEecCCCCHHHHHHHHHHccCCceEEEEEeeec-----CCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCCccc
Q 021355 234 LRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATE-----PERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGFDVV 308 (313)
Q Consensus 234 I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~-----~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~~~~ 308 (313)
+.|.++.+||.|.+|+.+|.+. |++|.+...... .+.....+++++.+ ...| ..+..+|.+.|+.+.
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~-~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~------~~~l-~~l~~~l~~~g~~~~ 72 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEA-GANIIEVSHDRAFKTLPLGEVEVELTLETRG------AEHI-EEIIAALREAGYDVR 72 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHc-CCCEEEEEEEeccCCCCCceEEEEEEEEeCC------HHHH-HHHHHHHHHcCCEEe
Confidence 3577899999999999999999 899998876654 35556666666643 1233 577788888898764
No 34
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=96.82 E-value=0.02 Score=43.37 Aligned_cols=50 Identities=18% Similarity=0.316 Sum_probs=43.1
Q ss_pred EEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeec--CCeEEEEEEEEeeC
Q 021355 232 FYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATE--PERLVLTFNLNVKD 282 (313)
Q Consensus 232 ~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~--~~~~~~t~~~kv~~ 282 (313)
+.|+|.+.+++|+|.+|..++.+. +++|.+.++... ++.+...|.++|++
T Consensus 7 ~~l~i~~~dr~GlL~dI~~~i~~~-~~nI~~i~~~~~~~~~~~~~~l~v~V~d 58 (80)
T PF13291_consen 7 VRLRIEAEDRPGLLADITSVISEN-GVNIRSINARTNKDDGTARITLTVEVKD 58 (80)
T ss_dssp EEEEEEEE--TTHHHHHHHHHHCS-SSEEEEEEEEE--ETTEEEEEEEEEESS
T ss_pred EEEEEEEEcCCCHHHHHHHHHHHC-CCCeEEEEeEEeccCCEEEEEEEEEECC
Confidence 678999999999999999999999 899999999885 57889999999975
No 35
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=96.79 E-value=0.011 Score=64.31 Aligned_cols=73 Identities=16% Similarity=0.161 Sum_probs=59.5
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCC---hHHHHHHHHHHHhcC
Q 021355 230 RRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMN---LPNLRLWVTGALLNQ 303 (313)
Q Consensus 230 ~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~---~~~Lk~~v~~al~~~ 303 (313)
+...|.|.+.++||+|++|..+|..+ |++|+.|.|.|.++.++-+|.+.-.++...-+ ...|++.|..+|...
T Consensus 813 ~~T~i~V~a~DrpGLLa~I~~~L~~~-~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~ 888 (895)
T PRK00275 813 PVTVLEIIAPDRPGLLARIGRIFLEF-DLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDAR 888 (895)
T ss_pred CeEEEEEEECCCCCHHHHHHHHHHHC-CCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 44789999999999999999999999 89999999999999999999987555533222 356777777777543
No 36
>PRK04374 PII uridylyl-transferase; Provisional
Probab=96.67 E-value=0.014 Score=63.43 Aligned_cols=69 Identities=22% Similarity=0.230 Sum_probs=55.0
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCCh---HHHHHHHHHHH
Q 021355 230 RRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMNL---PNLRLWVTGAL 300 (313)
Q Consensus 230 ~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~~---~~Lk~~v~~al 300 (313)
+-..|.|.+.++||+|.+|..+|.++ |++|+.|.|+|.+++++-+|.+.-.++.. +.. .+|+++|..+|
T Consensus 795 ~~t~leI~a~DrpGLLa~Ia~~l~~~-~l~I~~AkI~T~g~~a~D~F~V~d~~g~~-~~~~~~~~l~~~L~~~l 866 (869)
T PRK04374 795 RRTRISLVAPDRPGLLADVAHVLRMQ-HLRVHDARIATFGERAEDQFQITDEHDRP-LSESARQALRDALCACL 866 (869)
T ss_pred CeEEEEEEeCCcCcHHHHHHHHHHHC-CCeEEEeEEEecCCEEEEEEEEECCCCCc-CChHHHHHHHHHHHHHh
Confidence 44789999999999999999999999 89999999999999999999987554432 332 34444444444
No 37
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=96.52 E-value=0.014 Score=63.43 Aligned_cols=70 Identities=14% Similarity=0.173 Sum_probs=55.2
Q ss_pred CceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHh
Q 021355 229 ERRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALL 301 (313)
Q Consensus 229 ~~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~ 301 (313)
+.-..|+|.+.+|||+|.+|.++|.++ |++|..|-|+|.++++.-+|.+.-..|. .++-++. +.|+.+|+
T Consensus 781 ~~~T~iev~a~DrpGLL~~I~~~l~~~-~l~i~~AkI~T~gerv~D~Fyv~~~~g~-~l~~~~~-~~l~~~L~ 850 (854)
T PRK01759 781 QEQTEMELFALDRAGLLAQVSQVFSEL-NLNLLNAKITTIGEKAEDFFILTNQQGQ-ALDEEER-KALKSRLL 850 (854)
T ss_pred CCeEEEEEEeCCchHHHHHHHHHHHHC-CCEEEEEEEcccCceEEEEEEEECCCCC-cCChHHH-HHHHHHHH
Confidence 344789999999999999999999999 9999999999999999999998654442 3432222 55555554
No 38
>PRK05092 PII uridylyl-transferase; Provisional
Probab=96.43 E-value=0.024 Score=62.14 Aligned_cols=72 Identities=22% Similarity=0.191 Sum_probs=58.9
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCC---hHHHHHHHHHHHhc
Q 021355 230 RRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMN---LPNLRLWVTGALLN 302 (313)
Q Consensus 230 ~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~---~~~Lk~~v~~al~~ 302 (313)
....|.|.|.++||+|.+|..+|.++ |++|..|.|.|.++++.-+|.+.-.++..-.+ ...|++.|..+|..
T Consensus 842 ~~t~i~I~~~DrpGLl~~I~~~l~~~-gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~ 916 (931)
T PRK05092 842 RFTVIEVNGRDRPGLLYDLTRALSDL-NLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAE 916 (931)
T ss_pred CeEEEEEEECCcCcHHHHHHHHHHHC-CceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcC
Confidence 44789999999999999999999999 89999999999999999999987554432212 45677777777754
No 39
>PRK03059 PII uridylyl-transferase; Provisional
Probab=96.38 E-value=0.017 Score=62.69 Aligned_cols=49 Identities=18% Similarity=0.278 Sum_probs=45.8
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEE
Q 021355 230 RRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLN 279 (313)
Q Consensus 230 ~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~k 279 (313)
+...|.|.|.++||+|.+|..+|..+ |++|+.|.|.|.++.++-+|.+.
T Consensus 785 ~~T~i~V~a~DrpGLLa~Ia~~L~~~-~l~I~~AkI~T~~~~v~DvF~V~ 833 (856)
T PRK03059 785 QYYILSVSANDRPGLLYAIARVLAEH-RVSVHTAKINTLGERVEDTFLID 833 (856)
T ss_pred CEEEEEEEeCCcchHHHHHHHHHHHC-CCeEEEEEEeecCCEEEEEEEEc
Confidence 45789999999999999999999999 89999999999999999999983
No 40
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=96.33 E-value=0.0025 Score=63.91 Aligned_cols=59 Identities=29% Similarity=0.311 Sum_probs=49.8
Q ss_pred ccccccccccHHHHHHHHHHHHHHHHHhccCCC---CCC-CChhhHHHHHHHHHHHHHHHHHH
Q 021355 119 NKKADRSRTLVSERKRRGKMKEKLYGLRALVPN---ISK-MDKASIIGDAVSYLQELQMQVRK 177 (313)
Q Consensus 119 ~~~~~r~~h~~~Er~RR~~in~~~~~LrslvP~---~~k-~dkasiL~~Ai~YI~~Lq~~~~~ 177 (313)
+.+.+|...+.+||.|=+.||+.|.+|..+.-- ..| ..|.-||..||.-|-.|+|||.+
T Consensus 522 REkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE 584 (632)
T KOG3910|consen 522 REKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE 584 (632)
T ss_pred HHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999887643 222 35899999999999999999876
No 41
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.33 E-value=0.023 Score=42.08 Aligned_cols=66 Identities=9% Similarity=0.129 Sum_probs=54.2
Q ss_pred EEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHHH
Q 021355 233 YLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGA 299 (313)
Q Consensus 233 ~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~a 299 (313)
.|.|.|+++.|+-.+|.+++-+. ||.|....++|.|.=-+..|-+.-+.....+.-+.||..+.++
T Consensus 2 vitvnCPDktGLgcdlcr~il~f-Gl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~~ 67 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEF-GLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMSA 67 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHh-ceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHhc
Confidence 57899999999999999999999 9999999999988644455555444444668889999998775
No 42
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.19 E-value=0.035 Score=59.70 Aligned_cols=68 Identities=24% Similarity=0.176 Sum_probs=56.4
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHh
Q 021355 230 RRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALL 301 (313)
Q Consensus 230 ~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~ 301 (313)
+-..|.|.+.++||+|.+|..+|..+ |++|+.|.|.|.++.++-+|.+.-.++ ..+.- . .+.|+.+|+
T Consensus 706 ~~t~i~V~a~DrpGLla~Ia~~L~~~-~lnI~~AkI~T~g~~a~D~F~V~d~~g-~~~~~-~-~~~l~~~L~ 773 (774)
T PRK03381 706 DATVLEVRAADRPGLLARLARALERA-GVDVRWARVATLGADVVDVFYVTGAAG-GPLAD-A-RAAVEQAVL 773 (774)
T ss_pred CeEEEEEEeCCchhHHHHHHHHHHHC-CCeEEEEEEeecCCeEEEEEEEECCCC-CcCch-H-HHHHHHHhh
Confidence 34789999999999999999999999 999999999999999999999875444 33332 2 677777775
No 43
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.17 E-value=0.03 Score=60.20 Aligned_cols=72 Identities=15% Similarity=0.088 Sum_probs=61.3
Q ss_pred CceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhc
Q 021355 229 ERRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLN 302 (313)
Q Consensus 229 ~~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~ 302 (313)
.+.+.|.|.|.++||++++|..+|..+ |++|+.|.+.+.+|.++-+|.+.-.++. ....+.+++.|+.+|..
T Consensus 597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~-glnI~dA~i~t~dg~~ld~F~V~~~~~~-~~~~~~l~~~L~~~L~~ 668 (774)
T PRK03381 597 PHMVEVTVVAPDRRGLLSKAAGVLALH-RLRVRSASVRSHDGVAVLEFVVSPRFGS-PPDAALLRQDLRRALDG 668 (774)
T ss_pred CCeEEEEEEecCCccHHHHHHHHHHHC-CCeEEEeEEEecCCEEEEEEEEECCCCC-cchHHHHHHHHHHHHcC
Confidence 456789999999999999999999999 9999999999988888888888654442 24468899999999877
No 44
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.027 Score=59.99 Aligned_cols=81 Identities=17% Similarity=0.222 Sum_probs=62.7
Q ss_pred ceeEEEE-eeCceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHH
Q 021355 220 MQIDVFQ-VEERRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTG 298 (313)
Q Consensus 220 ~~VeV~~-v~~~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~ 298 (313)
|.|.+.. ...+..+++|.+..|||+|..|..+|..+ ++++++|.|+|+|.++.-+|.+....+ ..+ -.++++.+.+
T Consensus 779 p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl-~l~i~~AkItT~GErveD~F~vt~~~~-~~l-~~~~~q~l~~ 855 (867)
T COG2844 779 PRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADL-GLSLHSAKITTFGERVEDVFIVTDADG-QAL-NAELRQSLLQ 855 (867)
T ss_pred CceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhc-ccceeeeeeccccccceeEEEEecccc-ccC-CHHHHHHHHH
Confidence 4555422 22345789999999999999999999999 899999999999999999999887665 444 4556666666
Q ss_pred HHhcC
Q 021355 299 ALLNQ 303 (313)
Q Consensus 299 al~~~ 303 (313)
+++.+
T Consensus 856 ~ll~a 860 (867)
T COG2844 856 RLLEA 860 (867)
T ss_pred HHHHH
Confidence 66543
No 45
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=95.94 E-value=0.04 Score=59.74 Aligned_cols=69 Identities=13% Similarity=0.085 Sum_probs=54.8
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHh
Q 021355 230 RRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALL 301 (313)
Q Consensus 230 ~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~ 301 (313)
+-..|.|.|.++||+|.+|.++|.++ |++|.++.+.|.++++.-+|.+....+. -++- +..+.|..+|+
T Consensus 778 ~~t~~~v~~~DrpGll~~i~~~l~~~-~~~i~~a~i~t~~~~~~d~F~v~~~~g~-~~~~-~~~~~l~~~L~ 846 (850)
T TIGR01693 778 KATIMEVRALDRPGLLARVGRTLEEL-GLSIQSAKITTFGEKAEDVFYVTDLFGL-KLTD-EEEQRLLEVLA 846 (850)
T ss_pred CeEEEEEEECCccHHHHHHHHHHHHC-CCeEEEEEEEecCccceeEEEEECCCCC-CCCH-HHHHHHHHHHH
Confidence 45789999999999999999999999 9999999999999999999998765442 2222 34444544444
No 46
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=95.91 E-value=0.056 Score=58.62 Aligned_cols=75 Identities=15% Similarity=0.061 Sum_probs=61.1
Q ss_pred CceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEee-ecCCeEEEEEEEEeeCCCccCC---hHHHHHHHHHHHhcCC
Q 021355 229 ERRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFA-TEPERLVLTFNLNVKDCEQNMN---LPNLRLWVTGALLNQG 304 (313)
Q Consensus 229 ~~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~is-t~~~~~~~t~~~kv~~~~~~i~---~~~Lk~~v~~al~~~~ 304 (313)
.+...|.|.+.+++|+|.+|..+|..+ |++|+.|.|. +.++.++-+|.+.-.++..--+ .+.|++.|..+|....
T Consensus 666 ~~~t~i~V~~~DrpgLla~i~~~L~~~-~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~~~~ 744 (850)
T TIGR01693 666 SGGTEVFIYAPDQPGLFAKVAGALAML-SLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAGLA 744 (850)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHC-CCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHcCCC
Confidence 345689999999999999999999999 8999999998 7788899999987665532212 5568888888887654
No 47
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.78 E-value=0.091 Score=38.44 Aligned_cols=66 Identities=9% Similarity=0.169 Sum_probs=48.5
Q ss_pred EEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeec--CCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCCccc
Q 021355 232 FYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATE--PERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGFDVV 308 (313)
Q Consensus 232 ~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~--~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~~~~ 308 (313)
..|.+..++++|.|.++++.|.+. |+++.+...... .+...+.|++...+. ..+..+|.+.||.+.
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~-~inI~~i~~~~~~~~~~~~v~i~v~~~~~----------~~~~~~L~~~G~~v~ 69 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDR-GVNIVSVLVYPSKEEDNKILVFRVQTMNP----------RPIIEDLRRAGYEVL 69 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHc-CCCEEEEEEeccCCCCeEEEEEEEecCCH----------HHHHHHHHHCCCeee
Confidence 356778899999999999999999 899987764433 245555666554221 277788888999875
No 48
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=95.77 E-value=0.076 Score=38.75 Aligned_cols=62 Identities=21% Similarity=0.236 Sum_probs=48.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCCcc
Q 021355 233 YLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGFDV 307 (313)
Q Consensus 233 ~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~~~ 307 (313)
.|.|..+.+||.|.+|+++|.+. |++|.+.-+...++. ..+++...+ .+++.++|.+.||.+
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~-~inI~~i~~~~~~~~--~~~rl~~~~----------~~~~~~~L~~~G~~v 64 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEA-GINIRALSIADTSEF--GILRLIVSD----------PDKAKEALKEAGFAV 64 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHC-CCCEEEEEEEecCCC--CEEEEEECC----------HHHHHHHHHHCCCEE
Confidence 45677889999999999999999 899998877665553 455555532 257778888899876
No 49
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.49 E-value=0.087 Score=38.83 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=41.8
Q ss_pred EEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC-CeEEEEEEEEeeCC
Q 021355 234 LRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP-ERLVLTFNLNVKDC 283 (313)
Q Consensus 234 I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~-~~~~~t~~~kv~~~ 283 (313)
|+|.+..++|+|.+|+.+|.+. |.+|...+..... +.....|++++.+.
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~-~~nI~~v~~~~~~~~~~~~~~~vev~~~ 51 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEA-GGDIGAIDLVEQGRDYTVRDITVDAPSE 51 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHc-CCcEEEEEEEEecCCEEEEEEEEEcCCH
Confidence 6788999999999999999999 8999998887654 67777788888754
No 50
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.39 E-value=0.11 Score=37.87 Aligned_cols=65 Identities=15% Similarity=0.250 Sum_probs=44.8
Q ss_pred EEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC-C-eEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCCcc
Q 021355 233 YLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP-E-RLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGFDV 307 (313)
Q Consensus 233 ~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~-~-~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~~~ 307 (313)
.+.|.+++++|.|.+|+..|.+. |+++......... + .....+.+++.+ + ...+..+|.+.||.+
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~-~i~i~~~~~~~~~~~~~~~~~i~v~~~~-----~----~~~~~~~L~~~G~~v 69 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDA-GISIKNIEILEIREGIGGILRISFKTQE-----D----RERAKEILKEAGYEV 69 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc-CCCceeeEeEEeecCCcEEEEEEECCHH-----H----HHHHHHHHHHcCCcC
Confidence 46788899999999999999999 8999887655542 1 222334333221 2 346777777788864
No 51
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=95.28 E-value=0.0085 Score=51.60 Aligned_cols=51 Identities=27% Similarity=0.414 Sum_probs=46.5
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhccCCC--CCCCChhhHHHHHHHHHHHHH
Q 021355 122 ADRSRTLVSERKRRGKMKEKLYGLRALVPN--ISKMDKASIIGDAVSYLQELQ 172 (313)
Q Consensus 122 ~~r~~h~~~Er~RR~~in~~~~~LrslvP~--~~k~dkasiL~~Ai~YI~~Lq 172 (313)
.+|.-|++.||+|=..+|+.|..||.++|. +.|.+|.-.|.-|..||-.|=
T Consensus 77 ~qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~ 129 (173)
T KOG4447|consen 77 KQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLY 129 (173)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhh
Confidence 356779999999999999999999999997 578999999999999999983
No 52
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=95.27 E-value=0.16 Score=55.20 Aligned_cols=74 Identities=8% Similarity=0.073 Sum_probs=59.1
Q ss_pred CceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeee-cCCeEEEEEEEEeeCCCccCC---hHHHHHHHHHHHhcCC
Q 021355 229 ERRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFAT-EPERLVLTFNLNVKDCEQNMN---LPNLRLWVTGALLNQG 304 (313)
Q Consensus 229 ~~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist-~~~~~~~t~~~kv~~~~~~i~---~~~Lk~~v~~al~~~~ 304 (313)
.+...|.|.|++++|+|++|..+|..+ |++|+.|.|.| .+|.++-+|.+.-.++. .+. .+.|+..|+.+|....
T Consensus 675 ~~~t~V~V~~~DrpGLfa~Ia~~L~~~-~L~I~~A~I~T~~~g~alD~F~V~d~~g~-~~~~~~~~~l~~~L~~aL~~~~ 752 (854)
T PRK01759 675 RGGTEIFIYCQDQANLFLKVVSTIGAK-KLSIHDAQIITSQDGYVLDSFIVTELNGK-LLEFDRRRQLEQALTKALNTNK 752 (854)
T ss_pred CCeEEEEEEecCCccHHHHHHHHHHHC-CCeEEEEEEEEccCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHHcCCC
Confidence 355789999999999999999999999 89999999977 77899989988644443 233 3357788888886543
No 53
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.23 E-value=0.093 Score=37.37 Aligned_cols=61 Identities=13% Similarity=0.179 Sum_probs=43.9
Q ss_pred EEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC--CeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCCcc
Q 021355 234 LRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP--ERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGFDV 307 (313)
Q Consensus 234 I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~--~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~~~ 307 (313)
|.|.-+.++|.|.+++.+|.+. |++|.+....... +...+. +.+++ ...+..+|.+.||.+
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~-~~nI~~i~~~~~~~~~~~~v~--~~ve~----------~~~~~~~L~~~G~~v 64 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEE-GINIEYMYAFVEKKGGKALLI--FRTED----------IEKAIEVLQERGVEL 64 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHC-CCChhheEEEccCCCCeEEEE--EEeCC----------HHHHHHHHHHCCceE
Confidence 5667789999999999999999 8999776654433 344343 34432 357777788889876
No 54
>PRK05092 PII uridylyl-transferase; Provisional
Probab=95.09 E-value=0.21 Score=54.91 Aligned_cols=73 Identities=14% Similarity=0.079 Sum_probs=57.2
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeec-CCeEEEEEEEEeeCCCccC---ChHHHHHHHHHHHhcC
Q 021355 230 RRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATE-PERLVLTFNLNVKDCEQNM---NLPNLRLWVTGALLNQ 303 (313)
Q Consensus 230 ~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~-~~~~~~t~~~kv~~~~~~i---~~~~Lk~~v~~al~~~ 303 (313)
+...|.|.|.+++|+|.+|..+|..+ |++|+.|.|.+. ++.++-+|.+.-.++.... ....|+..|..++.+.
T Consensus 731 ~~t~v~I~~~Dr~GLfa~i~~~L~~~-glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~~ 807 (931)
T PRK05092 731 GVTEVTVLAADHPGLFSRIAGACAAA-GANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAKAIEDALSGE 807 (931)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHC-CCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCC
Confidence 56889999999999999999999999 899999999875 5666666877655443322 3666788888888643
No 55
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.05 E-value=0.12 Score=38.16 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=40.1
Q ss_pred EEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeec-CCeEEEEEEEEeeC
Q 021355 233 YLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATE-PERLVLTFNLNVKD 282 (313)
Q Consensus 233 ~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~-~~~~~~t~~~kv~~ 282 (313)
.+.|.+..++|+|.+|+.+|.+. +.+|...+.... ++.+...|++++.+
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~-~inI~~i~~~~~~~~~~~i~~~v~v~~ 51 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQV-RGNVLTINQNIPIHGRANVTISIDTST 51 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHc-CCCEEEEEeCCCCCCeEEEEEEEEcCc
Confidence 56888999999999999999999 899999877553 35667777777754
No 56
>PRK05007 PII uridylyl-transferase; Provisional
Probab=95.03 E-value=0.21 Score=54.53 Aligned_cols=73 Identities=14% Similarity=0.074 Sum_probs=58.1
Q ss_pred CceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCC-eEEEEEEEEeeCCCccCC---hHHHHHHHHHHHhcC
Q 021355 229 ERRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPE-RLVLTFNLNVKDCEQNMN---LPNLRLWVTGALLNQ 303 (313)
Q Consensus 229 ~~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~-~~~~t~~~kv~~~~~~i~---~~~Lk~~v~~al~~~ 303 (313)
.+...|.|.|.+++|+|.+|..+|..+ |++|+.|.|.|.++ .++-+|.+.-.++. .+. .+.|++.|.+||...
T Consensus 699 ~~~t~V~V~a~DrpGLfa~Ia~~La~~-~L~I~~A~I~T~~dg~alD~F~V~d~~g~-~~~~~~~~~I~~~L~~aL~~~ 775 (884)
T PRK05007 699 RGGTEIFIWSPDRPYLFAAVCAELDRR-NLSVHDAQIFTSRDGMAMDTFIVLEPDGS-PLSQDRHQVIRKALEQALTQS 775 (884)
T ss_pred CCeEEEEEEecCCcCHHHHHHHHHHHC-CCEEEEEEEEEcCCCeEEEEEEEECCCCC-CCCHHHHHHHHHHHHHHHcCC
Confidence 356789999999999999999999999 89999999987764 78888887655443 233 345788888888654
No 57
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=94.80 E-value=0.19 Score=55.03 Aligned_cols=74 Identities=16% Similarity=0.151 Sum_probs=57.1
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeec-CCeEEEEEEEEeeCCCccC-C---hHHHHHHHHHHHhcCC
Q 021355 230 RRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATE-PERLVLTFNLNVKDCEQNM-N---LPNLRLWVTGALLNQG 304 (313)
Q Consensus 230 ~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~-~~~~~~t~~~kv~~~~~~i-~---~~~Lk~~v~~al~~~~ 304 (313)
+...|.|.|.+++|+|++|..+|..+ |++|+.|.|.|. +|.++-+|.+.-.++..-. + .+.|+..|..+|....
T Consensus 703 ~~t~V~V~~~DrpgLFa~i~g~L~~~-~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~~~~ 781 (895)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQL-NLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALRNPD 781 (895)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHC-CCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHcCCC
Confidence 45789999999999999999999999 899999998544 5677788887655554312 2 3457788888876543
No 58
>PRK04435 hypothetical protein; Provisional
Probab=94.77 E-value=0.18 Score=43.34 Aligned_cols=68 Identities=12% Similarity=0.155 Sum_probs=51.0
Q ss_pred eeCceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeec-CCeEEEEEEEEeeCCCccCChHHHHHHHH
Q 021355 227 VEERRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATE-PERLVLTFNLNVKDCEQNMNLPNLRLWVT 297 (313)
Q Consensus 227 v~~~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~-~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~ 297 (313)
..|+.+.|.+.+.+++|+|.+|+.+|.+. |++|...+.... ++....+|++++.+. ...+.+|-..|+
T Consensus 65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~-~aNIltI~q~i~~~g~a~vs~tVevs~~--~~~L~~Li~~L~ 133 (147)
T PRK04435 65 VKGKIITLSLLLEDRSGTLSKVLNVIAEA-GGNILTINQSIPLQGRANVTISIDTSSM--EGDIDELLEKLR 133 (147)
T ss_pred CCCcEEEEEEEEecCCCHHHHHHHHHHHc-CCCeEEEEEEcCCCCEEEEEEEEEeCCh--HHHHHHHHHHHH
Confidence 45778999999999999999999999999 899998876543 466777788877542 223444444443
No 59
>PRK04374 PII uridylyl-transferase; Provisional
Probab=94.62 E-value=0.19 Score=54.87 Aligned_cols=74 Identities=9% Similarity=0.140 Sum_probs=59.6
Q ss_pred CceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeee-cCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcC
Q 021355 229 ERRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFAT-EPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQ 303 (313)
Q Consensus 229 ~~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist-~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~ 303 (313)
.+...|.|.|..++|+|++|..+|..+ |++|+.|.|.+ .+|.++-+|.+.-.++...-....++..|+.+|.+.
T Consensus 688 ~~~~~v~v~~~d~~gLFa~i~g~l~~~-~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~l~~~ 762 (869)
T PRK04374 688 NDALEVFVYSPDRDGLFAAIVATLDRK-GYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAALRQVLAGD 762 (869)
T ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHC-CCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHHHHHHcCC
Confidence 355789999999999999999999999 89999999987 457888888886444432234666888888888765
No 60
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=94.49 E-value=0.16 Score=37.95 Aligned_cols=46 Identities=13% Similarity=0.290 Sum_probs=38.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeC
Q 021355 233 YLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKD 282 (313)
Q Consensus 233 ~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~ 282 (313)
.|+|.|..++|+|.+|+.++.+. +.++...++.+. +. ..+++++.+
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~-~~nI~~~~~~~~-~~--i~l~i~v~~ 47 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEH-NIDLRGIEIDPK-GR--IYLNFPTIE 47 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHC-CCceEEEEEecC-Ce--EEEEeEecC
Confidence 47899999999999999999999 899999998765 33 456666653
No 61
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=94.40 E-value=0.33 Score=46.18 Aligned_cols=74 Identities=16% Similarity=0.168 Sum_probs=59.0
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeee--cCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCCcc
Q 021355 231 RFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFAT--EPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGFDV 307 (313)
Q Consensus 231 ~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist--~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~~~ 307 (313)
.+.|.+.|.+|+|+...|.++|-++ |+++..++.++ .++.|...+.+.+. ....+...|+..+.+.-...|.++
T Consensus 6 ~~vitv~G~DrpGIVa~Vt~~La~~-g~NI~d~s~~~~~~~g~F~m~i~v~~~--~~~~~~~~L~~~L~~l~~~l~l~i 81 (286)
T PRK06027 6 RYVLTLSCPDRPGIVAAVSNFLYEH-GGNIVDADQFVDPETGRFFMRVEFEGD--GLIFNLETLRADFAALAEEFEMDW 81 (286)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHC-CCCEEEceeEEcCCCCeEEEEEEEEeC--CCCCCHHHHHHHHHHHHHHhCCEE
Confidence 3678999999999999999999999 99999999998 77866665555552 123468889998887776666554
No 62
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=94.27 E-value=0.26 Score=47.00 Aligned_cols=74 Identities=9% Similarity=0.157 Sum_probs=57.3
Q ss_pred EEEEEEecCCCCHHHHHHHHHHccCCceEEEEEee--ecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCCcc
Q 021355 232 FYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFA--TEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGFDV 307 (313)
Q Consensus 232 ~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~is--t~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~~~ 307 (313)
+.|.|.|++++|+.+.|...|-+. |++++.++-. +..+.|+..+.+... ....++...|+.++..+-..-|.++
T Consensus 10 ~iitv~G~Dr~GIVA~Vs~~Lae~-g~NI~disq~~d~~~~~ffm~i~~~~~-~~~~~~~~~l~~~l~~l~~~l~l~~ 85 (289)
T PRK13010 10 YVLTLACPSAPGIVAAVSGFLAEK-GCYIVELTQFDDDESGRFFMRVSFHAQ-SAEAASVDTFRQEFQPVAEKFDMQW 85 (289)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHC-CCCEEecccccccccCcEEEEEEEEcC-CCCCCCHHHHHHHHHHHHHHhCCeE
Confidence 678999999999999999999999 9999998875 445566555444322 2236789999999998777666554
No 63
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.00 E-value=0.36 Score=35.04 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=38.6
Q ss_pred EEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC--CeEEEEEEEEee
Q 021355 232 FYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP--ERLVLTFNLNVK 281 (313)
Q Consensus 232 ~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~--~~~~~t~~~kv~ 281 (313)
++|+|.+..++|+|.+|+.+|.+. |.++.+.+..... +.....+.+.+.
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~-~i~I~~~~~~~~~~~~~~~~~i~~~~~ 51 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEH-GISIESVIQKEADGGETAPVVIVTHET 51 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHc-CCCeEEEEEcccCCCCceeEEEEEccC
Confidence 478999999999999999999999 8999988765542 445555555543
No 64
>PRK03059 PII uridylyl-transferase; Provisional
Probab=93.97 E-value=0.35 Score=52.74 Aligned_cols=74 Identities=8% Similarity=0.051 Sum_probs=56.9
Q ss_pred CceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEee-ecCCeEEEEEEEEeeCCCcc--CChHHHHHHHHHHHhcC
Q 021355 229 ERRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFA-TEPERLVLTFNLNVKDCEQN--MNLPNLRLWVTGALLNQ 303 (313)
Q Consensus 229 ~~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~is-t~~~~~~~t~~~kv~~~~~~--i~~~~Lk~~v~~al~~~ 303 (313)
.+...|.|.|.+++|+|++|..+|..+ |++|+.|.|. +.+|.++-+|.+.-.++... --.+.|+..|+.||.+.
T Consensus 676 ~~~~~v~i~~~d~~gLFa~i~g~l~~~-~l~I~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~~~i~~~l~~~l~~~ 752 (856)
T PRK03059 676 GEGLQVMVYTPDQPDLFARICGYFDRA-GFSILDARVHTTRHGYALDTFQVLDPEEDVHYRDIINLVEHELAERLAEQ 752 (856)
T ss_pred CCeEEEEEEecCCCcHHHHHHHHHHHC-CCceeeeEEEEcCCCeEEEEEEEeCCCCCCChHHHHHHHHHHHHHHHcCC
Confidence 355789999999999999999999999 8999999995 45678888888764433210 12556777888887654
No 65
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=93.87 E-value=0.16 Score=40.16 Aligned_cols=74 Identities=11% Similarity=0.168 Sum_probs=61.7
Q ss_pred EEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCCccc
Q 021355 232 FYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGFDVV 308 (313)
Q Consensus 232 ~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~~~~ 308 (313)
++|.|.-.+|+|+.+.|..+|-++ |.+++..+=+-..+.|-.. +-|..+....+...|+..++.+..+.|.++.
T Consensus 4 avITV~GkDr~GIva~is~vLAe~-~vNIldisQtvm~~~ftm~--~lV~~~~~~~d~~~lr~~l~~~~~~lgv~V~ 77 (90)
T COG3830 4 AVITVIGKDRVGIVAAVSRVLAEH-GVNILDISQTVMDGFFTMI--MLVDISKEVVDFAALRDELAAEGKKLGVDVR 77 (90)
T ss_pred EEEEEEcCCCCchhHHHHHHHHHc-CCcEEEHHHHHHhhhceee--eEEcCChHhccHHHHHHHHHHHHHhcCcEEE
Confidence 678999999999999999999999 8999998888777766444 3455455678999999999999999887753
No 66
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=93.83 E-value=0.44 Score=45.28 Aligned_cols=66 Identities=12% Similarity=0.204 Sum_probs=51.8
Q ss_pred EEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC--CeEEEEEEEEeeCCCccCChHHHHHHHHHHHh
Q 021355 233 YLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP--ERLVLTFNLNVKDCEQNMNLPNLRLWVTGALL 301 (313)
Q Consensus 233 ~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~--~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~ 301 (313)
.|.|.|++++|+.+.|...|-+. |++++.++-.... +.|...+.+.+. ...++...|+..+..++.
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~-g~NI~d~sq~~~~~~~~F~mr~~v~~~--~~~~~~~~l~~~l~~~~~ 69 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKH-GANIISNDQHTDPETGRFFMRVEFQLE--GFRLEESSLLAAFKSALA 69 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHC-CCCEEeeeEEEcCCCCeEEEEEEEEeC--CCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999 9999999987754 666555444433 234788999999988443
No 67
>PRK07334 threonine dehydratase; Provisional
Probab=93.81 E-value=0.3 Score=48.42 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=55.4
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeec-----CCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCC
Q 021355 230 RRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATE-----PERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQG 304 (313)
Q Consensus 230 ~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~-----~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~ 304 (313)
-.+.|+|.+..|+|+|.+|+.+|.+. +++|.+.++.+. ++.....|+++|++- ++| ..|.+.|.+.|
T Consensus 325 y~v~l~I~~~dr~GlL~dI~~~is~~-~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~------~~L-~~vi~~Lr~~g 396 (403)
T PRK07334 325 RLARLRVDIRDRPGALARVTALIGEA-GANIIEVSHQRLFTDLPAKGAELELVIETRDA------AHL-QEVIAALRAAG 396 (403)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhC-CCceEEEEEEecccCCCCCeEEEEEEEEeCCH------HHH-HHHHHHHHHcC
Confidence 34899999999999999999999999 899999998764 467777888888743 233 45666777788
Q ss_pred Ccc
Q 021355 305 FDV 307 (313)
Q Consensus 305 ~~~ 307 (313)
|..
T Consensus 397 ~~~ 399 (403)
T PRK07334 397 FEA 399 (403)
T ss_pred Cee
Confidence 764
No 68
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=93.59 E-value=0.57 Score=44.62 Aligned_cols=75 Identities=11% Similarity=0.108 Sum_probs=56.1
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCCcc
Q 021355 231 RFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGFDV 307 (313)
Q Consensus 231 ~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~~~ 307 (313)
.+.|.|.|++++|+..+|.+.|-++ |+++...+..+..+.-.+++.+++... ...+...|++.+...-..-|.++
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~-~vNI~dls~~~~~~~~~F~m~~~~~~p-~~~~~~~L~~~L~~l~~~l~l~i 81 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEH-GCYITELHSFDDRLSGRFFMRVEFHSE-EGLDEDALRAGFAPIAARFGMQW 81 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhC-CCCEEEeeeeecCCCCeEEEEEEEecC-CCCCHHHHHHHHHHHHHHhCcEE
Confidence 3678999999999999999999999 899999887643322233344455422 34678999999998777766654
No 69
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=93.48 E-value=0.52 Score=30.54 Aligned_cols=35 Identities=11% Similarity=0.228 Sum_probs=30.2
Q ss_pred EEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC
Q 021355 234 LRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP 269 (313)
Q Consensus 234 I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~ 269 (313)
|.|.|..++|.+.+|+.+|... ++.|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~-~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEA-GINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHC-CCcEEEEEeEEcC
Confidence 4678889999999999999999 8999998876553
No 70
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=93.46 E-value=0.73 Score=34.23 Aligned_cols=47 Identities=6% Similarity=0.098 Sum_probs=37.0
Q ss_pred EEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCC-eEEEEEEEEeeC
Q 021355 235 RLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPE-RLVLTFNLNVKD 282 (313)
Q Consensus 235 ~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~-~~~~t~~~kv~~ 282 (313)
.+...+++|.|.+|+.++.+. |+++.+.......+ ..-+.|.+.+.+
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~-~vni~~I~Srp~~~~~~~~~f~id~~~ 50 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAER-GINLTKIESRPSRKGLWEYEFFVDFEG 50 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHC-CCCEEEEEeeecCCCCceEEEEEEEEC
Confidence 344568999999999999999 89999986665543 566777777764
No 71
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=93.36 E-value=0.47 Score=32.60 Aligned_cols=48 Identities=15% Similarity=0.295 Sum_probs=38.1
Q ss_pred EEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC-CeEEEEEEEEeeC
Q 021355 234 LRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP-ERLVLTFNLNVKD 282 (313)
Q Consensus 234 I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~-~~~~~t~~~kv~~ 282 (313)
|+|.+..++|.+.+|+..|.+. ++++....+...+ +.....+++++..
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~ 49 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEE-KINILSVNTRTDDDGLATIRLTLEVRD 49 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhC-CCCEEEEEeEECCCCEEEEEEEEEECC
Confidence 4677899999999999999999 8999998887665 4455666666553
No 72
>PRK08577 hypothetical protein; Provisional
Probab=92.63 E-value=0.97 Score=37.97 Aligned_cols=65 Identities=14% Similarity=0.153 Sum_probs=47.6
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC--CeEEEEEEEEeeCCCccCChHHHHHHHH
Q 021355 230 RRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP--ERLVLTFNLNVKDCEQNMNLPNLRLWVT 297 (313)
Q Consensus 230 ~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~--~~~~~t~~~kv~~~~~~i~~~~Lk~~v~ 297 (313)
+.++|.|.+..++|+|.+|+++|.+. +.++.+.+..+.. +.+...+++.+.+.+ .++..+...|.
T Consensus 55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~-~inI~~i~~~~~~~~~~~~i~l~vev~~~~--~~l~~l~~~L~ 121 (136)
T PRK08577 55 KLVEIELVVEDRPGVLAKITGLLAEH-GVDILATECEELKRGELAECVIIVDLSKSD--IDLEELEEELK 121 (136)
T ss_pred cEEEEEEEEcCCCCHHHHHHHHHHHC-CCCEEEEEEEEecCCCEEEEEEEEEeCCch--hhHHHHHHHHH
Confidence 36889999999999999999999999 8999988776654 445566777776431 23444444443
No 73
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.22 E-value=1.1 Score=31.69 Aligned_cols=57 Identities=9% Similarity=0.129 Sum_probs=39.2
Q ss_pred EEEEecCCCCHHHHHHHHHHccCCceEEEEEeeec--CCeEEEEEEEEeeCCCccCChHHHHHHHH
Q 021355 234 LRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATE--PERLVLTFNLNVKDCEQNMNLPNLRLWVT 297 (313)
Q Consensus 234 I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~--~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~ 297 (313)
+.|.+..++|.|.+|+..|.+. |+++.+...... ++..... +.+++. ++..+...|+
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~-~~~I~~~~~~~~~~~~~~~i~--i~v~~~----~~~~~i~~l~ 60 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADH-EINIAFMRVSRKEKGDQALMV--IEVDQP----IDEEVIEEIK 60 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHc-CcCeeeeEEEeccCCCeEEEE--EEeCCC----CCHHHHHHHH
Confidence 5678899999999999999999 899988876652 2333333 455432 3444444443
No 74
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.95 E-value=1.5 Score=32.27 Aligned_cols=66 Identities=15% Similarity=0.173 Sum_probs=44.2
Q ss_pred EEEEecCCCCHHHHHHHHHHccCCceEEEEEeeec--C-CeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCCccc
Q 021355 234 LRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATE--P-ERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGFDVV 308 (313)
Q Consensus 234 I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~--~-~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~~~~ 308 (313)
+.|.-+.+||.|.+|+..|.+. |++|++...... + +.....+++.++. .+ . .+.|..+|.+. ++++
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~-g~nI~~i~~~~~~~~~~~~~~~v~v~~e~--~~----~-~~~i~~~L~~~-~~~~ 70 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREF-NARIISILTAFEDAPDGMRRVFIRVTPMD--RS----K-ENELIEELKAK-FTVV 70 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHC-CCeEEEEEeccccCCCCccEEEEEEEEec--ch----H-HHHHHHHHhCc-ccEE
Confidence 4566789999999999999999 899998876665 2 3334445544422 11 1 45666666544 6654
No 75
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=91.78 E-value=2.1 Score=32.27 Aligned_cols=59 Identities=7% Similarity=0.121 Sum_probs=42.7
Q ss_pred EEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC-CeEEEEEEEEeeCCCccCChHHHHHHH
Q 021355 234 LRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP-ERLVLTFNLNVKDCEQNMNLPNLRLWV 296 (313)
Q Consensus 234 I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~-~~~~~t~~~kv~~~~~~i~~~~Lk~~v 296 (313)
+.+....++|.|.+|++.+.+. |+++.+....... +...+.|.+++... .+...++..+
T Consensus 4 l~~~~~d~~G~L~~il~~f~~~-~ini~~i~s~p~~~~~~~~~f~vd~~~~---~~~~~~~~~l 63 (80)
T cd04905 4 IVFTLPNKPGALYDVLGVFAER-GINLTKIESRPSKGGLWEYVFFIDFEGH---IEDPNVAEAL 63 (80)
T ss_pred EEEEECCCCCHHHHHHHHHHHC-CcCEEEEEEEEcCCCCceEEEEEEEECC---CCCHHHHHHH
Confidence 4555678899999999999999 8999888765554 45668888877643 3344555544
No 76
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.53 E-value=1.2 Score=32.66 Aligned_cols=65 Identities=12% Similarity=0.186 Sum_probs=46.4
Q ss_pred EEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC-CeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCCccc
Q 021355 235 RLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP-ERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGFDVV 308 (313)
Q Consensus 235 ~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~-~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~~~~ 308 (313)
+|.-+.+||-|.+++++|.+ . .+|+..+....+ +.....+.+++.+. .-...|..+|...|+.+.
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~-~nI~~~~~~~~~~~~~~v~v~ie~~~~-------~~~~~i~~~L~~~G~~~~ 67 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-P-RNITEFHYRNQGGDEARVLVGIQVPDR-------EDLAELKERLEALGYPYV 67 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-C-CcEEEEEEEcCCCCceEEEEEEEeCCH-------HHHHHHHHHHHHcCCCcc
Confidence 56678999999999999987 3 788877765543 33445566666642 334677778888998764
No 77
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=91.48 E-value=1.6 Score=30.70 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=35.7
Q ss_pred EEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC--CeEEEEEEE
Q 021355 234 LRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP--ERLVLTFNL 278 (313)
Q Consensus 234 I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~--~~~~~t~~~ 278 (313)
+.|.+..++|++.+|+.+|.+. |++|.+..+...+ +.....|++
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~-~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEH-GINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhc-CCCeeeEEEeccCCCCEEEEEEEc
Confidence 5677889999999999999999 8999998887654 555555554
No 78
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.25 E-value=1.2 Score=31.77 Aligned_cols=46 Identities=11% Similarity=0.131 Sum_probs=35.4
Q ss_pred EEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC-CeEEEEEEEEee
Q 021355 233 YLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP-ERLVLTFNLNVK 281 (313)
Q Consensus 233 ~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~-~~~~~t~~~kv~ 281 (313)
.|.|.+..++|.|.+++..|.+. +++|.+.+..... +..... +.+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~-~~~i~~~~~~~~~~~~~~~~--i~~~ 48 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEH-GGNITYTQQFIEREGKARIY--MELE 48 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhC-CCCEEEEEEeccCCCeEEEE--EEEe
Confidence 46788999999999999999999 8999988776653 343333 4454
No 79
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=91.09 E-value=0.65 Score=41.67 Aligned_cols=72 Identities=7% Similarity=0.066 Sum_probs=56.5
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCCcc
Q 021355 231 RFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGFDV 307 (313)
Q Consensus 231 ~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~~~ 307 (313)
.++|.+.+.+|||+...|.++|.+. |.+++.++.+..++.|-..+.+... ...+..|+..+...-...|..+
T Consensus 8 ~lviTviG~DrpGIVa~vs~~l~~~-g~NI~ds~~t~lgg~Fa~i~lvs~~----~~~~~~le~~L~~l~~~~~L~i 79 (190)
T PRK11589 8 YLVITALGADRPGIVNTITRHVSSC-GCNIEDSRLAMLGEEFTFIMLLSGS----WNAITLIESTLPLKGAELDLLI 79 (190)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHHc-CCCeeehhhHhhCCceEEEEEEeCC----hhHHHHHHHHHHhhhhhcCeEE
Confidence 4788999999999999999999999 8999999999999977555554222 2367778877776665555543
No 80
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=90.80 E-value=1.6 Score=30.84 Aligned_cols=47 Identities=13% Similarity=0.220 Sum_probs=37.9
Q ss_pred EEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeec--CCeEEEEEEEEe
Q 021355 233 YLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATE--PERLVLTFNLNV 280 (313)
Q Consensus 233 ~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~--~~~~~~t~~~kv 280 (313)
.+.|.+..++|+|.+|+..|.+. ++++.+.+.... ++...+.+++.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~ 50 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARR-GFNIESLTVGPTEDPGISRITIVVEG 50 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhC-CCCEEEEEeeecCCCCeEEEEEEEEC
Confidence 46778889999999999999999 899999887664 355666666665
No 81
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=90.67 E-value=0.17 Score=53.10 Aligned_cols=70 Identities=23% Similarity=0.257 Sum_probs=58.7
Q ss_pred cccccccccHHHHHHHHHHHHHHHHHhccCCCC-----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021355 120 KKADRSRTLVSERKRRGKMKEKLYGLRALVPNI-----SKMDKASIIGDAVSYLQELQMQVRKLKAEIASLEYSM 189 (313)
Q Consensus 120 ~~~~r~~h~~~Er~RR~~in~~~~~LrslvP~~-----~k~dkasiL~~Ai~YI~~Lq~~~~~L~~~~~~l~~~~ 189 (313)
.+.++..|+.+|.+||.+++-.|..|.+++.+. .|+.++.-++..+.||..++++...++++...|+++.
T Consensus 648 ~k~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~~lr~~~ 722 (856)
T KOG3582|consen 648 AKNRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAHSLRKEI 722 (856)
T ss_pred ccCCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhhhhhhhh
Confidence 347788999999999999999999999998763 4677888899999999999888888877776665443
No 82
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.02 E-value=2.2 Score=32.79 Aligned_cols=68 Identities=13% Similarity=0.201 Sum_probs=45.9
Q ss_pred EEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC-CeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCCccc
Q 021355 232 FYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP-ERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGFDVV 308 (313)
Q Consensus 232 ~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~-~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~~~~ 308 (313)
.++.|.-+.+||-|.+++++|-. .+|......... +.....+.++++++ .+-...+..+|...|+.++
T Consensus 2 ~vl~v~ipD~PG~L~~ll~~l~~---anI~~~~y~~~~~~~~~v~i~ie~~~~------~~~~~~i~~~L~~~G~~~~ 70 (85)
T cd04906 2 ALLAVTIPERPGSFKKFCELIGP---RNITEFNYRYADEKDAHIFVGVSVANG------AEELAELLEDLKSAGYEVV 70 (85)
T ss_pred eEEEEecCCCCcHHHHHHHHhCC---CceeEEEEEccCCCeeEEEEEEEeCCc------HHHHHHHHHHHHHCCCCeE
Confidence 46788889999999999999983 455554444332 34455566677652 1223566678888999875
No 83
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=89.90 E-value=1.3 Score=30.86 Aligned_cols=45 Identities=13% Similarity=0.209 Sum_probs=35.3
Q ss_pred EEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC-CeEEEEEEEE
Q 021355 234 LRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP-ERLVLTFNLN 279 (313)
Q Consensus 234 I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~-~~~~~t~~~k 279 (313)
|.|....++|.|.+++.+|.+. |++|....+...+ +..+..|.+.
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~-~inI~~~~~~~~~~~~~~~~~~v~ 46 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEA-GINIKAISIAETRGEFGILRLIFS 46 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHc-CCCEeeEEEEEccCCcEEEEEEEC
Confidence 3567889999999999999999 8999887776655 5565555543
No 84
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=89.62 E-value=0.2 Score=46.92 Aligned_cols=52 Identities=25% Similarity=0.411 Sum_probs=46.2
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHhccCCC---CCCCChhhHHHHHHHHHHHHH
Q 021355 121 KADRSRTLVSERKRRGKMKEKLYGLRALVPN---ISKMDKASIIGDAVSYLQELQ 172 (313)
Q Consensus 121 ~~~r~~h~~~Er~RR~~in~~~~~LrslvP~---~~k~dkasiL~~Ai~YI~~Lq 172 (313)
+.+|.+=|..||.|=-.+|+-|..||.++|. ..|+.|...|.-|-+||..|+
T Consensus 70 ~~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als 124 (254)
T KOG3898|consen 70 TLRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALS 124 (254)
T ss_pred hhhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhc
Confidence 4567778889999999999999999999995 578999999999999999884
No 85
>PRK06382 threonine dehydratase; Provisional
Probab=89.41 E-value=2.6 Score=41.88 Aligned_cols=73 Identities=15% Similarity=0.128 Sum_probs=55.6
Q ss_pred eCceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEee----ec-CCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhc
Q 021355 228 EERRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFA----TE-PERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLN 302 (313)
Q Consensus 228 ~~~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~is----t~-~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~ 302 (313)
.++.+.+.|.-+.+||.|.+|++.|.+. +.+|++.... .. .+....+|+++.++. ...+.|.++|.+
T Consensus 327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~-~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~-------~~~~~v~~~L~~ 398 (406)
T PRK06382 327 LGQLVRIECNIPDRPGNLYRIANAIASN-GGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQ-------DHLDRILNALRE 398 (406)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHhcC-CCcEEEEEEeeccccCCCCcEEEEEEEEeCCH-------HHHHHHHHHHHH
Confidence 3566888999999999999999999999 8999887664 22 245566777776531 233588888999
Q ss_pred CCCccc
Q 021355 303 QGFDVV 308 (313)
Q Consensus 303 ~~~~~~ 308 (313)
.||.+.
T Consensus 399 ~Gy~~~ 404 (406)
T PRK06382 399 MGYKFN 404 (406)
T ss_pred CCCCee
Confidence 999874
No 86
>PRK08526 threonine dehydratase; Provisional
Probab=89.01 E-value=2 Score=42.79 Aligned_cols=76 Identities=14% Similarity=0.260 Sum_probs=59.5
Q ss_pred eCceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCC-----eEEEEEEEEeeCCCccCChHHHHHHHHHHHhc
Q 021355 228 EERRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPE-----RLVLTFNLNVKDCEQNMNLPNLRLWVTGALLN 302 (313)
Q Consensus 228 ~~~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~-----~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~ 302 (313)
.++.+.+.|.-+.+||.|.+++..+-+. +.+|+.....+... .....+.+++++. +-.+.|..+|..
T Consensus 323 ~~r~~~~~~~~~d~pg~l~~~~~~~~~~-~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~-------~~~~~~~~~l~~ 394 (403)
T PRK08526 323 SYRKMKLHVTLVDKPGALMGLTDILKEA-NANIVKIDYDRFSTKLDYGDAMISITLETKGK-------EHQEEIRKILTE 394 (403)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHccC-CCcEEEEEEEeccCCCCCccEEEEEEEEeCCH-------HHHHHHHHHHHH
Confidence 4677899999999999999999999999 79999888766443 3566677777643 334678888888
Q ss_pred CCCcccCCC
Q 021355 303 QGFDVVTPF 311 (313)
Q Consensus 303 ~~~~~~~~~ 311 (313)
.||.+.--|
T Consensus 395 ~g~~~~~~~ 403 (403)
T PRK08526 395 KGFNFYEEF 403 (403)
T ss_pred CCCCeEeCC
Confidence 999876544
No 87
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=88.83 E-value=0.34 Score=49.64 Aligned_cols=39 Identities=38% Similarity=0.642 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHhccCCC----CCCCChhhHHHHHHHHHH
Q 021355 131 ERKRRGKMKEKLYGLRALVPN----ISKMDKASIIGDAVSYLQ 169 (313)
Q Consensus 131 Er~RR~~in~~~~~LrslvP~----~~k~dkasiL~~Ai~YI~ 169 (313)
-|+-|+|+|.-+..|.+|+|- .+|.||.|||.=++.|++
T Consensus 33 SKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 477889999999999999996 589999999999999987
No 88
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=87.94 E-value=0.7 Score=33.24 Aligned_cols=46 Identities=11% Similarity=0.119 Sum_probs=34.3
Q ss_pred EEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEee
Q 021355 235 RLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVK 281 (313)
Q Consensus 235 ~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~ 281 (313)
-+.+..++|+|.+|+.+|.+. |.++...+....++.....+.+.+.
T Consensus 3 ~~~~~d~~g~l~~i~~~l~~~-~~nI~~~~~~~~~~~a~~~~~~~~~ 48 (69)
T cd04901 3 LHIHKNVPGVLGQINTILAEH-NINIAAQYLQTRGEIGYVVIDIDSE 48 (69)
T ss_pred EEEecCCCcHHHHHHHHHHHc-CCCHHHHhccCCCCEEEEEEEcCCC
Confidence 456789999999999999999 8998776655444565556555443
No 89
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=87.87 E-value=0.38 Score=50.58 Aligned_cols=46 Identities=39% Similarity=0.608 Sum_probs=39.7
Q ss_pred cccccHHHHHHHHHHHHHHHHHhccCCC----CCCCChhhHHHHHHHHHH
Q 021355 124 RSRTLVSERKRRGKMKEKLYGLRALVPN----ISKMDKASIIGDAVSYLQ 169 (313)
Q Consensus 124 r~~h~~~Er~RR~~in~~~~~LrslvP~----~~k~dkasiL~~Ai~YI~ 169 (313)
|.+-.-+-|-||.|=|+-|.+|..+||- ....|||+|+.=||.|+|
T Consensus 47 kEkSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR 96 (768)
T KOG3558|consen 47 KEKSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR 96 (768)
T ss_pred hhhhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH
Confidence 4444556799999999999999999994 357899999999999998
No 90
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=87.85 E-value=3 Score=40.79 Aligned_cols=73 Identities=11% Similarity=0.185 Sum_probs=54.7
Q ss_pred eCceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeec-----CCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhc
Q 021355 228 EERRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATE-----PERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLN 302 (313)
Q Consensus 228 ~~~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~-----~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~ 302 (313)
.++.+.+.|.-+++||.|.++++.+.+. |.+|++...... .+....++++++.+ ..-.+.|..+|.+
T Consensus 302 ~gr~~~l~v~l~D~pG~L~~v~~~i~~~-~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~-------~~~~~~i~~~L~~ 373 (380)
T TIGR01127 302 SGRKVRIETVLPDRPGALYHLLESIAEA-RANIVKIDHDRLSKEIPPGFAMVEITLETRG-------KEHLDEILKILRD 373 (380)
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHhcC-CCcEEEEEeeccccCCCCceEEEEEEEEeCC-------HHHHHHHHHHHHH
Confidence 3566789999999999999999999999 899988766522 24556666666653 1233678888888
Q ss_pred CCCccc
Q 021355 303 QGFDVV 308 (313)
Q Consensus 303 ~~~~~~ 308 (313)
.||.+.
T Consensus 374 ~G~~v~ 379 (380)
T TIGR01127 374 MGYNFY 379 (380)
T ss_pred cCCccc
Confidence 998763
No 91
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.76 E-value=5.4 Score=31.44 Aligned_cols=63 Identities=11% Similarity=0.169 Sum_probs=44.7
Q ss_pred EEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC-CeEEEEEEEEeeCCCccCChHHHHHHHHHH
Q 021355 232 FYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP-ERLVLTFNLNVKDCEQNMNLPNLRLWVTGA 299 (313)
Q Consensus 232 ~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~-~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~a 299 (313)
..|-+..+.++|.|.++|.++... |+++.+...-... ...-|.|.+.+... . -..++..|...
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~-~INLt~IeSRP~~~~~~~Y~FfVDieg~-~---~~~~~~~l~~L 78 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEK-DINLTHIESRPSRLNKDEYEFFINLDKK-S---APALDPIIKSL 78 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHC-CCCEEEEEeccCCCCCceEEEEEEEEcC-C---CHHHHHHHHHH
Confidence 345555678899999999999999 8999988765544 34567888887743 2 24555555443
No 92
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=87.46 E-value=5.3 Score=29.84 Aligned_cols=47 Identities=9% Similarity=0.104 Sum_probs=37.2
Q ss_pred EEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC-CeEEEEEEEEeeC
Q 021355 235 RLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP-ERLVLTFNLNVKD 282 (313)
Q Consensus 235 ~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~-~~~~~t~~~kv~~ 282 (313)
-+..++++|.|.+++..+... |+++.+...-... ...-|.|.+++..
T Consensus 4 ~f~l~~~pG~L~~vL~~f~~~-~iNlt~IeSRP~~~~~~~y~Ffvd~~~ 51 (74)
T cd04904 4 IFSLKEEVGALARALKLFEEF-GVNLTHIESRPSRRNGSEYEFFVDCEV 51 (74)
T ss_pred EEEeCCCCcHHHHHHHHHHHC-CCcEEEEECCCCCCCCceEEEEEEEEc
Confidence 344567899999999999999 8999998775555 3456888888774
No 93
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=87.23 E-value=4 Score=36.61 Aligned_cols=72 Identities=7% Similarity=0.116 Sum_probs=55.3
Q ss_pred EEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCC------eEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCC
Q 021355 232 FYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPE------RLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGF 305 (313)
Q Consensus 232 ~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~------~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~ 305 (313)
+.|.|.-.++||+..+|.++|-+. |++|...+..+.+. .|...+.+.+. .+.++..|+..+....-.-+.
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~-~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP---~~~~~~~L~~~l~~l~~eL~v 171 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSH-HMNIAELVSRTQPAEGERPAQLHIQITAHSP---ASQDAANIEQAFKALCTELNA 171 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHc-CCChhheEEeeecCCCCCcccEEEEEEEEcC---CCCCHHHHHHHHHHHHHHhCc
Confidence 677888999999999999999999 89998877765542 45555555555 346788899988887766665
Q ss_pred cc
Q 021355 306 DV 307 (313)
Q Consensus 306 ~~ 307 (313)
+.
T Consensus 172 d~ 173 (190)
T PRK11589 172 QG 173 (190)
T ss_pred eE
Confidence 53
No 94
>PRK08198 threonine dehydratase; Provisional
Probab=86.09 E-value=3.8 Score=40.49 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=54.4
Q ss_pred eCceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeec-----CCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhc
Q 021355 228 EERRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATE-----PERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLN 302 (313)
Q Consensus 228 ~~~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~-----~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~ 302 (313)
.++.+.+.|.-+++||.|.+|+..|-+. |.+|+..+.... .+....++.+++.+ .+ -.+.|..+|..
T Consensus 324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~-g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~------~~-~~~~l~~~L~~ 395 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQLAKLLSIIAEL-GANVIDVDHDRFSPDLRLGEVEVELTLETRG------PE-HIEEILDALRD 395 (404)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhhC-CCceEEEEEEEccCCCCCceEEEEEEEEeCC------HH-HHHHHHHHHHH
Confidence 3566889999999999999999999999 899988877642 24566666666642 12 23567777888
Q ss_pred CCCccc
Q 021355 303 QGFDVV 308 (313)
Q Consensus 303 ~~~~~~ 308 (313)
.|+.+.
T Consensus 396 ~G~~v~ 401 (404)
T PRK08198 396 AGYEVK 401 (404)
T ss_pred CCCeEE
Confidence 888764
No 95
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=85.70 E-value=1.2 Score=41.69 Aligned_cols=53 Identities=25% Similarity=0.315 Sum_probs=45.8
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHH
Q 021355 121 KADRSRTLVSERKRRGKMKEKLYGLRALVPNI---SKMDKASIIGDAVSYLQELQM 173 (313)
Q Consensus 121 ~~~r~~h~~~Er~RR~~in~~~~~LrslvP~~---~k~dkasiL~~Ai~YI~~Lq~ 173 (313)
+.+|..-+..||+|=..+|..|..||..||.. .|.+|-..|+-|-.||--|-.
T Consensus 172 ~~rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~ 227 (285)
T KOG4395|consen 172 SHRRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGC 227 (285)
T ss_pred HhhhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHH
Confidence 35567788999999999999999999999974 578899999999999987743
No 96
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=85.19 E-value=7.3 Score=29.83 Aligned_cols=49 Identities=14% Similarity=0.227 Sum_probs=37.4
Q ss_pred EEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEee
Q 021355 232 FYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVK 281 (313)
Q Consensus 232 ~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~ 281 (313)
..|.|.-..+||+|.+++.++..- |++|.+.++....+.-+..+++-+.
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rR-GfnI~sl~v~~t~~~~~sriti~v~ 52 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHR-GFQVCSMNMTQNTDAQNINIELTVA 52 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcC-CeeeeeEEeeecCCCCEEEEEEEEC
Confidence 357788889999999999999999 9999999988754333344444443
No 97
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=84.67 E-value=5 Score=46.48 Aligned_cols=72 Identities=17% Similarity=0.176 Sum_probs=58.3
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEe---eecC--CeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcC
Q 021355 230 RRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNF---ATEP--ERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQ 303 (313)
Q Consensus 230 ~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~i---st~~--~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~ 303 (313)
+.+.++|....++..|++++-+||++ |+.|+...- .+.+ ...+|.|.+....+ ..++...++..+..||.+.
T Consensus 488 ~~~~lkiy~~~~~~~Ls~vlPilenl-Gl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~-~~~~~~~~~~~~~~a~~~v 564 (1528)
T PF05088_consen 488 GRLRLKIYHPGEPLPLSDVLPILENL-GLRVIDERPYEIRRADGRRVWIHDFGLQYPDG-DALDLDDIRERFEEAFEAV 564 (1528)
T ss_pred CeEEEEEEcCCCCcCHHHHHHHHHhC-CCEEEEEecceeecCCCceEEEEEEEEecCCC-ccccHHHHHHHHHHHHHHH
Confidence 45889999988999999999999999 999988643 3321 35788999987755 4488999999999988754
No 98
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=84.28 E-value=6.4 Score=42.44 Aligned_cols=50 Identities=8% Similarity=0.223 Sum_probs=43.6
Q ss_pred EEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeec--CCeEEEEEEEEeeC
Q 021355 232 FYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATE--PERLVLTFNLNVKD 282 (313)
Q Consensus 232 ~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~--~~~~~~t~~~kv~~ 282 (313)
+.|.|.+..++|+|.+|..+|.+. +++|.++++.+. ++.+...|+++|++
T Consensus 667 v~I~I~~~Dr~GlL~dIt~~is~~-~~nI~~v~~~~~~~~~~~~~~~~ieV~~ 718 (743)
T PRK10872 667 LVVRVTANDRSGLLRDITTILANE-KVNVLGVASRSDTKQQLATIDMTIEIYN 718 (743)
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHC-CCCeEEEEeEEcCCCCEEEEEEEEEECC
Confidence 578899999999999999999999 899999998765 36677788888875
No 99
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=83.98 E-value=5.6 Score=35.27 Aligned_cols=66 Identities=9% Similarity=0.179 Sum_probs=46.2
Q ss_pred EEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHH
Q 021355 232 FYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGAL 300 (313)
Q Consensus 232 ~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al 300 (313)
..|.|...++||+|.+|...|-.. |+++.+.++......-...+++.+.+++. . ++.|+..+.+.+
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrR-g~NIesLsv~~t~~~~~sr~TIvv~~~~~-~-ieqL~kQL~KLi 68 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARR-GFNIESLAVGPAEQKGISRITMVVPGDDR-T-IEQLTKQLYKLV 68 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhC-CCCeeEEEeeEcCCCCccEEEEEEECCHH-H-HHHHHHHHHHHh
Confidence 357888899999999999999999 99999999876443334455555654321 1 555655555443
No 100
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=83.94 E-value=1.1 Score=44.53 Aligned_cols=41 Identities=44% Similarity=0.593 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHhccCCC----CCCCChhhHHHHHHHHHHH
Q 021355 130 SERKRRGKMKEKLYGLRALVPN----ISKMDKASIIGDAVSYLQE 170 (313)
Q Consensus 130 ~Er~RR~~in~~~~~LrslvP~----~~k~dkasiL~~Ai~YI~~ 170 (313)
+-|.||++-|--|.+|..++|- ....||++|+.=|..|||-
T Consensus 8 aA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 8 AARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred HHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence 4599999999999999999996 3568999999999999983
No 101
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=83.88 E-value=14 Score=28.35 Aligned_cols=49 Identities=12% Similarity=0.165 Sum_probs=37.5
Q ss_pred EEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEee
Q 021355 232 FYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVK 281 (313)
Q Consensus 232 ~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~ 281 (313)
..|.+....+||+|.++..++..- |+++.+.++...++.-+.-+++.+.
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rR-gfNI~Sl~vg~te~~~~sriti~~~ 51 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARR-GYYISSLNLNERDTSGVSEMKLTAV 51 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhcc-CcceEEEEecccCCCCeeEEEEEEE
Confidence 357888889999999999999999 9999998887655434444444433
No 102
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=83.87 E-value=5 Score=38.00 Aligned_cols=65 Identities=12% Similarity=0.225 Sum_probs=48.7
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC--CeEEEEEEEEeeCCCccCChHHHHHHHHH
Q 021355 231 RFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP--ERLVLTFNLNVKDCEQNMNLPNLRLWVTG 298 (313)
Q Consensus 231 ~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~--~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~ 298 (313)
.+.+.++|+.++|+...|...|.+. |.+++.++--+.- ++|+.-...... ...++.+.|+..+..
T Consensus 7 ~~~LtvsCpd~~GiVaais~~l~~~-g~NI~~~~qf~D~~~g~FFmR~~f~~~--~~~~~~~~l~~~f~~ 73 (287)
T COG0788 7 TFILTVSCPDQPGIVAAISGFLAEH-GCNIVDSDQFDDPETGRFFMRVEFEGE--GGPLDREALRAAFAP 73 (287)
T ss_pred ceEEEEecCCCCCcHHHHHHHHHHc-CCceeecccccccccCeEEEEEEEecC--CCcccHHHHHHHHHH
Confidence 4688999999999999999999999 8999998876433 455544443332 233677788877776
No 103
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=83.63 E-value=6.9 Score=41.78 Aligned_cols=50 Identities=14% Similarity=0.232 Sum_probs=44.0
Q ss_pred EEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC-CeEEEEEEEEeeC
Q 021355 232 FYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP-ERLVLTFNLNVKD 282 (313)
Q Consensus 232 ~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~-~~~~~t~~~kv~~ 282 (313)
+.|.|.+.+++|+|.+|+.+|-+. +.+|.+.++.+.. +.+...|+++|++
T Consensus 611 v~I~I~~~dr~GlLadI~~~ia~~-~~nI~~v~~~~~~~~~~~~~~~ieV~~ 661 (683)
T TIGR00691 611 VDINIEAVDRKGVLSDLTTAISEN-DSNIVSISTKTYGKREAILNITVEIKN 661 (683)
T ss_pred EEEEEEEecCCCHHHHHHHHHHHC-CCCeEEEEeEEcCCCEEEEEEEEEECC
Confidence 578999999999999999999999 8999999987774 6777788888874
No 104
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=83.59 E-value=5.9 Score=28.90 Aligned_cols=42 Identities=10% Similarity=0.221 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeC
Q 021355 240 RGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKD 282 (313)
Q Consensus 240 ~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~ 282 (313)
.++|.|.+|+.++..- |+++.+.++...++.-.+.+++.+.+
T Consensus 1 n~~GvL~Ri~~vf~rR-g~nI~sl~v~~~~~~~~~riti~v~~ 42 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRR-GFNIESLSVGPTEDPGISRITIVVSG 42 (63)
T ss_dssp SSTTHHHHHHHHHHTT-T-EECEEEEEE-SSTTEEEEEEEEES
T ss_pred CCcHHHHHHHHHHhcC-CeEEeeEEeeecCCCCEEEEEEEEee
Confidence 3689999999999999 99999999988443333444445554
No 105
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=82.95 E-value=6.3 Score=42.15 Aligned_cols=67 Identities=4% Similarity=0.083 Sum_probs=56.3
Q ss_pred EEEEEEe-cCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHh
Q 021355 232 FYLRLVS-SRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALL 301 (313)
Q Consensus 232 ~~I~I~c-~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~ 301 (313)
..+.|.. ++++|+|+++..+|--. |+.|.+|++.+ +|..+..|.+...-+ ...+...|.+.+.+++-
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~a~~~~-~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~ 614 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAK-GWNILSARMVA-NGPWSAEFDVRANGP-QDFDPQEFLQAYKSGVY 614 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhc-CceeeEeEEec-CCceEEEEEEecCCC-CCCChHHHHHHHHHhhc
Confidence 4556555 99999999999999999 89999999999 888888898876533 66788999999988874
No 106
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=82.44 E-value=5.5 Score=34.68 Aligned_cols=46 Identities=11% Similarity=0.202 Sum_probs=36.8
Q ss_pred EEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC--CeEEEEEEEE
Q 021355 233 YLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP--ERLVLTFNLN 279 (313)
Q Consensus 233 ~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~--~~~~~t~~~k 279 (313)
.|.|.-..++|.|.+|..+|... |+++.+..+...+ +....+|++.
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rr-g~NI~Sl~v~~t~~~~~sriti~V~ 50 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRR-GFNIESLTVGPTEDPDLSRMTIVVV 50 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhC-CceEEEEEEeecCCCCEEEEEEEEE
Confidence 56788889999999999999999 9999998887765 3444455443
No 107
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=82.39 E-value=8.3 Score=41.35 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=43.6
Q ss_pred EEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC-CeEEEEEEEEeeC
Q 021355 232 FYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP-ERLVLTFNLNVKD 282 (313)
Q Consensus 232 ~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~-~~~~~t~~~kv~~ 282 (313)
+.|.|.+.+++|+|.+|+.+|-+. +++|.++++.+.. +.+...|+++|++
T Consensus 627 v~i~I~~~dr~GlL~dI~~~i~~~-~~nI~~v~~~~~~~~~~~~~~~ieV~~ 677 (702)
T PRK11092 627 AEIKVEMFNHQGALANLTAAINTT-GSNIQSLNTEEKDGRVYSAFIRLTARD 677 (702)
T ss_pred EEEEEEEeCCCCHHHHHHHHHHHC-CCCeEEEEEEEcCCCEEEEEEEEEECC
Confidence 578999999999999999999999 8999999987765 5667778888875
No 108
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=82.06 E-value=13 Score=29.15 Aligned_cols=48 Identities=10% Similarity=0.231 Sum_probs=39.2
Q ss_pred EEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEee
Q 021355 233 YLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVK 281 (313)
Q Consensus 233 ~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~ 281 (313)
.|.+....++|+|.+|..++-.. |+++.+.++....+--+.-+++.+.
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRR-g~NI~SLtvg~Te~~~iSRmtivv~ 51 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRL-QYNIDTLHVTHSEQPGISNMEIQVD 51 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhcc-CcCeeeEEecccCCCCceEEEEEEe
Confidence 57788889999999999999998 9999999988777555555555554
No 109
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=81.74 E-value=12 Score=28.30 Aligned_cols=56 Identities=13% Similarity=0.044 Sum_probs=40.9
Q ss_pred EecCCCCHHHHHHHHHHccCCceEEEEEeeecC-CeEEEEEEEEeeCCCccCChHHHHHHHHH
Q 021355 237 VSSRGQGVAVSLYKALESLTSFDVQNFNFATEP-ERLVLTFNLNVKDCEQNMNLPNLRLWVTG 298 (313)
Q Consensus 237 ~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~-~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~ 298 (313)
..+.++|.|.+++..++.. |+++.+...-... ...-|.|.+.+.+. . ..++..+..
T Consensus 6 ~l~~~~g~L~~iL~~f~~~-~inl~~IeSRP~~~~~~~y~F~id~e~~-~----~~i~~~l~~ 62 (74)
T cd04929 6 SLKNEVGGLAKALKLFQEL-GINVVHIESRKSKRRSSEFEIFVDCECD-Q----RRLDELVQL 62 (74)
T ss_pred EcCCCCcHHHHHHHHHHHC-CCCEEEEEeccCCCCCceEEEEEEEEcC-H----HHHHHHHHH
Confidence 3467899999999999999 8999988765543 44578888888743 2 255555543
No 110
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=80.77 E-value=15 Score=32.14 Aligned_cols=46 Identities=9% Similarity=0.156 Sum_probs=36.6
Q ss_pred EEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC--CeEEEEEEEE
Q 021355 233 YLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP--ERLVLTFNLN 279 (313)
Q Consensus 233 ~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~--~~~~~t~~~k 279 (313)
.|.|.-..++|.|.+|...|... |+++.+..+.... +....+|++.
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rr-g~NI~Sl~v~~te~~~~sriti~V~ 51 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRR-GYNIESLTVGPTEDPGLSRMTIVTS 51 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhC-CCcEEEEEeeecCCCCEEEEEEEEE
Confidence 57788889999999999999999 9999998887665 3444455443
No 111
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=78.11 E-value=11 Score=32.97 Aligned_cols=68 Identities=9% Similarity=0.112 Sum_probs=51.1
Q ss_pred EEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeec---CCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCCcc
Q 021355 232 FYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATE---PERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGFDV 307 (313)
Q Consensus 232 ~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~---~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~~~ 307 (313)
+.+-|...++||.|+++++=|-+. |.+|++...+.. ++++-..+++++... ..-+++-.++..+|.-.
T Consensus 6 itldIEL~D~PGQLl~vLqPls~~-g~NiItIiH~r~kk~g~r~pV~i~~~~d~~-------~~~~~i~~~~e~~Gi~I 76 (170)
T COG2061 6 ITLDIELKDKPGQLLKVLQPLSKT-GANIITIIHSRDKKYGPRVPVQIVFEGDRE-------DKDAKIIRLLEEEGIII 76 (170)
T ss_pred EEEEEEecCCCcchhhhhcchhhc-CccEEEEEeecCcccCCceeEEEEEEeccc-------HHHHHHHHHHHhCCcEE
Confidence 456777889999999999999999 999999888777 667766666665532 33466666667777543
No 112
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=76.50 E-value=8 Score=27.75 Aligned_cols=44 Identities=7% Similarity=0.188 Sum_probs=33.5
Q ss_pred EEEecCCCCHHHHHHHHHHccCCceEEEEEeeec--CCeEEEEEEEE
Q 021355 235 RLVSSRGQGVAVSLYKALESLTSFDVQNFNFATE--PERLVLTFNLN 279 (313)
Q Consensus 235 ~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~--~~~~~~t~~~k 279 (313)
-|....++|.+.++.+.|.+. |+++.+..+... ++...+.+.++
T Consensus 3 ~v~~~d~~G~l~~i~~~l~~~-~inI~~~~~~~~~~~~~~~~~i~v~ 48 (73)
T cd04902 3 VVRNTDRPGVIGKVGTILGEA-GINIAGMQVGRDEPGGEALMVLSVD 48 (73)
T ss_pred EEEeCCCCCHHHHHHHHHHHc-CcChhheEeeccCCCCEEEEEEEeC
Confidence 456789999999999999999 899987765443 35665665554
No 113
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=75.88 E-value=16 Score=31.23 Aligned_cols=68 Identities=12% Similarity=0.165 Sum_probs=49.8
Q ss_pred eeCceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEe-eecCCeEEEEEEEEeeCCCccCChHHHHHHHH
Q 021355 227 VEERRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNF-ATEPERLVLTFNLNVKDCEQNMNLPNLRLWVT 297 (313)
Q Consensus 227 v~~~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~i-st~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~ 297 (313)
+.++.+.+.+...+|.|.|+++++++... +++|++.+= ....|+.-.++.+... .-+-+++.+-.+|+
T Consensus 68 ~k~ri~TL~l~ledr~G~LS~vLd~iA~~-~~nvLTI~Q~ipl~g~Anvtlsi~~s--sm~~~V~~ii~kl~ 136 (150)
T COG4492 68 LKERIITLSLSLEDRVGILSDVLDVIARE-EINVLTIHQTIPLQGRANVTLSIDTS--SMEKDVDKIIEKLR 136 (150)
T ss_pred ccceEEEEEEEEhhhhhhHHHHHHHHHHh-CCcEEEEecccccCceeeEEEEEEch--hhhhhHHHHHHHHh
Confidence 34566888899999999999999999999 799988653 3345777777777665 24445666655554
No 114
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=72.93 E-value=20 Score=35.79 Aligned_cols=73 Identities=10% Similarity=0.096 Sum_probs=53.1
Q ss_pred eCceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeee-cC-CeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCC
Q 021355 228 EERRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFAT-EP-ERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGF 305 (313)
Q Consensus 228 ~~~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist-~~-~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~ 305 (313)
.++.+.+++.-+.+||-|.++++.+-.. +.+|.....-. .+ +.....+.+++++. +-.+.|..+|...||
T Consensus 322 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~-~~NI~~~~y~~~~~~~~~~v~v~iE~~~~-------~h~~~i~~~L~~~Gy 393 (409)
T TIGR02079 322 EGLKHYFIVRFPQRPGALREFLNDVLGP-NDDITRFEYTKKSNRETGPALIGIELNDK-------EDFAGLLERMAAADI 393 (409)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcC-CCcEEEEEeeecCCCCeEEEEEEEEeCCH-------HHHHHHHHHHHHCCC
Confidence 3677899999999999999999966666 46888776653 22 34455666777642 234677778888999
Q ss_pred ccc
Q 021355 306 DVV 308 (313)
Q Consensus 306 ~~~ 308 (313)
.+.
T Consensus 394 ~~~ 396 (409)
T TIGR02079 394 HYE 396 (409)
T ss_pred CeE
Confidence 875
No 115
>PRK12483 threonine dehydratase; Reviewed
Probab=69.77 E-value=36 Score=35.26 Aligned_cols=73 Identities=19% Similarity=0.267 Sum_probs=52.8
Q ss_pred eCceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC-CeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCCc
Q 021355 228 EERRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP-ERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGFD 306 (313)
Q Consensus 228 ~~~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~-~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~~ 306 (313)
.++.+++.|.-+.+||-|.+++..|-+. +|+..+....+ ......+.+++++. +.+++.|..+|...||.
T Consensus 342 ~~r~~~~~v~~~d~pG~l~~~~~~l~~~---ni~~~~~~~~~~~~~~v~v~ie~~~~------~~~~~~i~~~l~~~g~~ 412 (521)
T PRK12483 342 EQREAIIAVTIPEQPGSFKAFCAALGKR---QITEFNYRYADAREAHLFVGVQTHPR------HDPRAQLLASLRAQGFP 412 (521)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhhc---CeEEEEEEecCCCeeEEEEEEEeCCh------hhhHHHHHHHHHHCCCC
Confidence 4677899999999999999999999877 45544444333 33455566666543 35567888999999998
Q ss_pred ccC
Q 021355 307 VVT 309 (313)
Q Consensus 307 ~~~ 309 (313)
+..
T Consensus 413 ~~d 415 (521)
T PRK12483 413 VLD 415 (521)
T ss_pred eEE
Confidence 753
No 116
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=68.45 E-value=34 Score=27.49 Aligned_cols=49 Identities=16% Similarity=0.120 Sum_probs=39.1
Q ss_pred EEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEee
Q 021355 232 FYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVK 281 (313)
Q Consensus 232 ~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~ 281 (313)
..|.+....+||+|.+|...+-.- |+++.+.++...+..-+.-+++-+.
T Consensus 9 ~tisvlv~N~pGVL~RIaglFsRR-gyNIeSLtvg~te~~~iSRmtivv~ 57 (96)
T PRK08178 9 VILELTVRNHPGVMSHVCGLFARR-AFNVEGILCLPIQDGDKSRIWLLVN 57 (96)
T ss_pred EEEEEEEECCcCHHHHHHHHHhcC-CcCeeeEEEeecCCCCceEEEEEEc
Confidence 578888999999999999999987 9999998887776544444555454
No 117
>PRK08639 threonine dehydratase; Validated
Probab=68.40 E-value=29 Score=34.66 Aligned_cols=73 Identities=12% Similarity=0.135 Sum_probs=50.0
Q ss_pred eCceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeec-C-CeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCC
Q 021355 228 EERRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATE-P-ERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGF 305 (313)
Q Consensus 228 ~~~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~-~-~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~ 305 (313)
.++.+.+++.-+.+||.|.++++.+-+. +.+|+....... + +.....+.+++++. +-.+.|..+|...||
T Consensus 333 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~-~~NI~~~~~~~~~~~~~~~v~v~iE~~~~-------~h~~~i~~~L~~~Gy 404 (420)
T PRK08639 333 EGLKHYFIVNFPQRPGALREFLDDVLGP-NDDITRFEYLKKNNRETGPVLVGIELKDA-------EDYDGLIERMEAFGP 404 (420)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcC-CCcEEEEEEeecCCCCceEEEEEEEeCCH-------HHHHHHHHHHHHCCC
Confidence 4677899999999999999999955555 357776655421 1 22234556666642 223567778888999
Q ss_pred ccc
Q 021355 306 DVV 308 (313)
Q Consensus 306 ~~~ 308 (313)
.+.
T Consensus 405 ~~~ 407 (420)
T PRK08639 405 SYI 407 (420)
T ss_pred ceE
Confidence 875
No 118
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=66.59 E-value=35 Score=28.08 Aligned_cols=50 Identities=12% Similarity=0.094 Sum_probs=37.9
Q ss_pred EEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC-CeEEEEEEEEeeCC
Q 021355 233 YLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP-ERLVLTFNLNVKDC 283 (313)
Q Consensus 233 ~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~-~~~~~t~~~kv~~~ 283 (313)
-+-+..++++|.|.++|..+... |+++.+...-... ...-|.|.+.+...
T Consensus 43 Slifsl~~~pGsL~~iL~~Fa~~-gINLt~IESRP~~~~~~eY~FfIdieg~ 93 (115)
T cd04930 43 TLLFSLKEGFSSLSRILKVFETF-EAKIHHLESRPSRKEGGDLEVLVRCEVH 93 (115)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHC-CCCEEEEECCcCCCCCceEEEEEEEEeC
Confidence 34444577899999999999999 8999998776553 34567787887643
No 119
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=65.55 E-value=39 Score=26.37 Aligned_cols=46 Identities=11% Similarity=0.165 Sum_probs=36.8
Q ss_pred EEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC--CeEEEEEEE
Q 021355 232 FYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP--ERLVLTFNL 278 (313)
Q Consensus 232 ~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~--~~~~~t~~~ 278 (313)
+.+.|....+|+.|.++|++.+.- ||.|...+.+..- +..-..+++
T Consensus 4 yqldl~ar~~pe~leRVLrvtrhR-GF~vcamnmt~~~da~~~nie~tV 51 (86)
T COG3978 4 YQLDLSARFNPETLERVLRVTRHR-GFRVCAMNMTAAVDAGNANIELTV 51 (86)
T ss_pred EEEeeeccCChHHHHHHHHHhhhc-CeEEEEeecccccccccceEEEEE
Confidence 456777888999999999999988 9999999998884 444444443
No 120
>PRK09224 threonine dehydratase; Reviewed
Probab=64.40 E-value=46 Score=34.20 Aligned_cols=73 Identities=18% Similarity=0.286 Sum_probs=50.3
Q ss_pred eCceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC-CeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCCc
Q 021355 228 EERRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP-ERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGFD 306 (313)
Q Consensus 228 ~~~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~-~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~~ 306 (313)
.++++++.|.-+.+||-|.++++.|-. .+|...+....+ +.....+.+++++.+. =.+.|..+|...|+.
T Consensus 325 ~~re~~l~v~iPerPGaL~~f~~~l~~---~nItef~yr~~~~~~a~V~vgie~~~~~~------~~~~i~~~L~~~gy~ 395 (504)
T PRK09224 325 EQREALLAVTIPEEPGSFLKFCELLGG---RNVTEFNYRYADAKEAHIFVGVQLSRGQE------ERAEIIAQLRAHGYP 395 (504)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhcc---CcEEEEEEEecCCCeEEEEEEEEeCChhh------HHHHHHHHHHHcCCC
Confidence 367899999999999999999999983 456555544433 3444556666664321 135677788889988
Q ss_pred ccC
Q 021355 307 VVT 309 (313)
Q Consensus 307 ~~~ 309 (313)
+..
T Consensus 396 ~~~ 398 (504)
T PRK09224 396 VVD 398 (504)
T ss_pred eEE
Confidence 764
No 121
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=63.86 E-value=42 Score=28.23 Aligned_cols=62 Identities=16% Similarity=0.215 Sum_probs=46.3
Q ss_pred EEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCCcc
Q 021355 233 YLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGFDV 307 (313)
Q Consensus 233 ~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~~~ 307 (313)
.|.|..+.+||-|..++.+|.+. |+++-..+++-.++-.+.- .-|... +.-.+||..+||-+
T Consensus 5 QISvFlENk~GRL~~~~~~L~ea-gINiRA~tiAdt~dFGIiR--mvV~~~----------d~A~~~Lee~gF~V 66 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEA-GINIRAFTIADTGDFGIIR--MVVDRP----------DEAHSVLEEAGFTV 66 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHc-CCceEEEEeccccCcceEE--EEcCCh----------HHHHHHHHHCCcEE
Confidence 46788899999999999999999 9999999888777644433 334433 33456777777754
No 122
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=62.61 E-value=5.7 Score=34.54 Aligned_cols=42 Identities=19% Similarity=0.212 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCC--CCChhhHHHHHHHHHHHH
Q 021355 130 SERKRRGKMKEKLYGLRALVPNIS--KMDKASIIGDAVSYLQEL 171 (313)
Q Consensus 130 ~Er~RR~~in~~~~~LrslvP~~~--k~dkasiL~~Ai~YI~~L 171 (313)
.||.|..++++.+.-|++|+|+.+ ++.+.-.|.-+.+||.+|
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~ 72 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSL 72 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhH
Confidence 489999999999999999999853 333333355566666555
No 123
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=59.87 E-value=16 Score=39.22 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=50.2
Q ss_pred EEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhc
Q 021355 232 FYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLN 302 (313)
Q Consensus 232 ~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~ 302 (313)
.+++|-...|+|+|..|+.+|+ +|.-+.++|.|..++-.|.+. .+++-..+...|.++|.+
T Consensus 632 ~~~e~r~~dr~g~l~~~~~~l~-----~~~~~~~~~~g~~~~~~~~~~-----~~~~r~~~~~~~~~~~~~ 692 (693)
T PRK00227 632 NILEVRTEDRRGALGALLGVLP-----DLLWITASTPGATMIVQAALK-----PGFDRATVERDVTRVLAG 692 (693)
T ss_pred cEEEEEeCccccHHHHHHHHhh-----hhhhHhhcCCCcceEEEEEec-----CcccHHHHHHHHHHHHhc
Confidence 5788999999999999999998 566788899998888888775 335677888888888754
No 124
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=58.78 E-value=14 Score=28.36 Aligned_cols=69 Identities=10% Similarity=0.158 Sum_probs=49.2
Q ss_pred EEEEecC-CCCHHHHHHHHHHccCCceEEEEEeeecCCeE---------EEEEEEEeeCCCccCChHHHHHHHHHHHhcC
Q 021355 234 LRLVSSR-GQGVAVSLYKALESLTSFDVQNFNFATEPERL---------VLTFNLNVKDCEQNMNLPNLRLWVTGALLNQ 303 (313)
Q Consensus 234 I~I~c~~-r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~---------~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~ 303 (313)
|.|.-.+ ..|.+.+|-++|-++ |+++.+.+- ..+++ .+++.+.|... . .+...|+.++...-...
T Consensus 2 vtvlg~~~~a~~ia~Vs~~lA~~-~~NI~~I~~--l~~~~~~~~~~~~~~~~~e~~v~~~-~-~~~~~lr~~L~~la~el 76 (84)
T cd04871 2 VTLLGRPLTAEQLAAVTRVVADQ-GLNIDRIRR--LSGRVPLEEQDDSPKACVEFSVRGQ-P-ADLEALRAALLELASEL 76 (84)
T ss_pred EEEEcCcCCHHHHHHHHHHHHHc-CCCHHHHHH--hhccccccccCCCCcEEEEEEEeCC-C-CCHHHHHHHHHHHhccc
Confidence 4555566 789999999999999 888865432 32332 45666666632 3 69999999999877777
Q ss_pred CCcc
Q 021355 304 GFDV 307 (313)
Q Consensus 304 ~~~~ 307 (313)
|.++
T Consensus 77 gvDI 80 (84)
T cd04871 77 NVDI 80 (84)
T ss_pred CceE
Confidence 7664
No 125
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=58.60 E-value=21 Score=27.08 Aligned_cols=26 Identities=35% Similarity=0.394 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021355 161 IGDAVSYLQELQMQVRKLKAEIASLE 186 (313)
Q Consensus 161 L~~Ai~YI~~Lq~~~~~L~~~~~~l~ 186 (313)
+..||+-|..||.++++|++++..|.
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 67899999999999999999866654
No 126
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.56 E-value=21 Score=27.05 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021355 161 IGDAVSYLQELQMQVRKLKAEIASLEYS 188 (313)
Q Consensus 161 L~~Ai~YI~~Lq~~~~~L~~~~~~l~~~ 188 (313)
+..||+-|.-||-++++|++++..|...
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~~e 40 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHH
Confidence 6789999999999999999998876533
No 127
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=55.56 E-value=38 Score=36.37 Aligned_cols=50 Identities=14% Similarity=0.261 Sum_probs=42.3
Q ss_pred EEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeec-CCeEEEEEEEEeeC
Q 021355 232 FYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATE-PERLVLTFNLNVKD 282 (313)
Q Consensus 232 ~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~-~~~~~~t~~~kv~~ 282 (313)
+.|.|...+++|+|.+|+++|-+. +.+|++.+..+. ++.+...|+++|++
T Consensus 628 ~~i~v~~~~r~glL~~i~~~i~~~-~~ni~~v~~~~~~~~~~~~~~~i~v~n 678 (701)
T COG0317 628 VDIEIRAYDRSGLLRDVSQVLANE-KINVLGVNTRSDKDQFATMQFTIEVKN 678 (701)
T ss_pred EEEEEEEccccchHHHHHHHHHhC-CCceEEeeccccCCceEEEEEEEEECc
Confidence 678888999999999999999999 799999998876 45556667777774
No 128
>PRK11899 prephenate dehydratase; Provisional
Probab=55.44 E-value=1e+02 Score=29.24 Aligned_cols=63 Identities=5% Similarity=-0.043 Sum_probs=45.8
Q ss_pred EEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC-CeEEEEEEEEeeCCCccCChHHHHHHHHHH
Q 021355 233 YLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP-ERLVLTFNLNVKDCEQNMNLPNLRLWVTGA 299 (313)
Q Consensus 233 ~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~-~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~a 299 (313)
.|-+..+++||.|.++|.++... |+++....+-... ...-|.|.+.+.+. .+-+.++.+|..+
T Consensus 196 sl~~~~~~~pGaL~~vL~~Fa~~-gINLtkIeSRP~~~~~~~Y~F~id~eg~---~~d~~v~~aL~~l 259 (279)
T PRK11899 196 TFVFRVRNIPAALYKALGGFATN-GVNMTKLESYMVGGSFTATQFYADIEGH---PEDRNVALALEEL 259 (279)
T ss_pred EEEEEeCCCCChHHHHHHHHHHc-CCCeeeEEeeecCCCCceEEEEEEEECC---CCCHHHHHHHHHH
Confidence 34444468999999999999999 8999888776664 45688888888864 2334555555554
No 129
>PLN02550 threonine dehydratase
Probab=54.30 E-value=49 Score=34.88 Aligned_cols=71 Identities=7% Similarity=0.157 Sum_probs=51.1
Q ss_pred CceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC-CeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCCcc
Q 021355 229 ERRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP-ERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGFDV 307 (313)
Q Consensus 229 ~~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~-~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~~~ 307 (313)
++.+++.|.-+.+||.|.+++..|-.. +|+..+....+ +.....+.+++++. +-.+.|..+|...|+.+
T Consensus 415 ~r~~~~~v~ipd~pG~l~~~~~~l~~~---ni~~~~~~~~~~~~~~v~v~ie~~~~-------~~~~~i~~~l~~~g~~~ 484 (591)
T PLN02550 415 QQEAVLATFMPEEPGSFKRFCELVGPM---NITEFKYRYSSEKEALVLYSVGVHTE-------QELQALKKRMESAQLRT 484 (591)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHhhhh---cceEEEEEecCCCceEEEEEEEeCCH-------HHHHHHHHHHHHCCCCe
Confidence 455889999999999999999999876 55555554433 44555666666642 23467888889999988
Q ss_pred cC
Q 021355 308 VT 309 (313)
Q Consensus 308 ~~ 309 (313)
+.
T Consensus 485 ~~ 486 (591)
T PLN02550 485 VN 486 (591)
T ss_pred Ee
Confidence 64
No 130
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=53.27 E-value=74 Score=34.83 Aligned_cols=72 Identities=15% Similarity=0.036 Sum_probs=51.7
Q ss_pred CceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC-CeEEEEEEEEeeCCCccCChH---HHHHHHHHHHhc
Q 021355 229 ERRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP-ERLVLTFNLNVKDCEQNMNLP---NLRLWVTGALLN 302 (313)
Q Consensus 229 ~~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~-~~~~~t~~~kv~~~~~~i~~~---~Lk~~v~~al~~ 302 (313)
.++..|-|.|+.+|.+++.+..++... |++|+.|.|-+.. |..+-||.+.-.+| ..+..+ .+...+.+++..
T Consensus 682 ~~~teV~V~a~d~p~Lfa~v~~~~~~~-g~~i~dAqi~tt~dG~alDtfiv~~~~g-~~~~~dr~~~~~~~l~~~l~s 757 (867)
T COG2844 682 SGGTEVFVYAPDRPRLFAVVCAALSRR-GLSIVDAQIFTTRDGYALDTFIVLEPDG-FPVEEDRRAALRGELIEALLS 757 (867)
T ss_pred CCceEEEEEcCCCccHHHHHHHHHccC-CCceeeeEEEEccCCceeeeEEEecCCC-CccchhHHHHHHHHHHHHHhc
Confidence 456889999999999999999999999 9999999997666 55777776653333 223322 333445555543
No 131
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=51.66 E-value=73 Score=32.78 Aligned_cols=72 Identities=17% Similarity=0.282 Sum_probs=49.6
Q ss_pred eCceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC-CeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCCc
Q 021355 228 EERRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP-ERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGFD 306 (313)
Q Consensus 228 ~~~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~-~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~~ 306 (313)
.++++++.|.-+.+||-|.+++++|-.- +|...+....+ +.....+.+++.+. +=.+.|..+|...|+.
T Consensus 322 ~~re~~l~V~iPerPGal~~f~~~i~~~---nItef~yr~~~~~~a~v~vgie~~~~-------~~~~~l~~~L~~~Gy~ 391 (499)
T TIGR01124 322 EQREALLAVTIPEQPGSFLKFCELLGNR---NITEFNYRYADRKDAHIFVGVQLSNP-------QERQEILARLNDGGYS 391 (499)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhhc---ceEEEEEEecCCCeEEEEEEEEeCCH-------HHHHHHHHHHHHcCCC
Confidence 3678999999999999999999999873 45544444333 33444555666532 2235666688888998
Q ss_pred ccC
Q 021355 307 VVT 309 (313)
Q Consensus 307 ~~~ 309 (313)
+..
T Consensus 392 ~~d 394 (499)
T TIGR01124 392 VVD 394 (499)
T ss_pred eEE
Confidence 764
No 132
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=49.45 E-value=33 Score=26.60 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021355 161 IGDAVSYLQELQMQVRKLKAEIASLEYS 188 (313)
Q Consensus 161 L~~Ai~YI~~Lq~~~~~L~~~~~~l~~~ 188 (313)
++.||+-|.-||.++++|++++..|...
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L~~e 40 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999998887644
No 133
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=48.90 E-value=5.9 Score=42.05 Aligned_cols=61 Identities=15% Similarity=0.255 Sum_probs=50.3
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHhccCCCC-----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021355 121 KADRSRTLVSERKRRGKMKEKLYGLRALVPNI-----SKMDKASIIGDAVSYLQELQMQVRKLKAEIAS 184 (313)
Q Consensus 121 ~~~r~~h~~~Er~RR~~in~~~~~LrslvP~~-----~k~dkasiL~~Ai~YI~~Lq~~~~~L~~~~~~ 184 (313)
.-.+..|+..+|+||-.+.++|..|-+|.|.. .+.++++||. +.|+.+++.-+.+.+....
T Consensus 785 ~~v~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~~~ 850 (856)
T KOG3582|consen 785 GMVSAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKIEG 850 (856)
T ss_pred ceeecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhhhh
Confidence 44567799999999999999999999998863 4678999998 8889998888777765543
No 134
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=47.20 E-value=22 Score=22.78 Aligned_cols=17 Identities=47% Similarity=0.647 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhc
Q 021355 131 ERKRRGKMKEKLYGLRA 147 (313)
Q Consensus 131 Er~RR~~in~~~~~Lrs 147 (313)
=|+||+.++.++..||.
T Consensus 13 Lrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 13 LRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 38899999999999985
No 135
>PRK05974 phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed
Probab=46.29 E-value=88 Score=23.79 Aligned_cols=50 Identities=22% Similarity=0.296 Sum_probs=31.7
Q ss_pred HHHHHHHHHccCCce-EEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhc
Q 021355 245 AVSLYKALESLTSFD-VQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLN 302 (313)
Q Consensus 245 L~~Il~aLe~l~gl~-V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~ 302 (313)
-..|.++|..| |+. |..+.+. -.|.+.++....+.....++.....+|.|
T Consensus 18 G~ai~~~l~~l-g~~~v~~Vr~~-------k~~~l~~~~~~~~~a~~~v~~i~~~lL~N 68 (80)
T PRK05974 18 GQAIKGALGSL-GYDGVEDVRQG-------KYFELELEGESEEKAEADLKEMCEKLLAN 68 (80)
T ss_pred HHHHHHHHHHc-CCCCcceEEEE-------EEEEEEEcCCchhhhHHHHHHHHHHhcCC
Confidence 36678899999 897 7665533 23333443333455667777777777766
No 136
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=45.94 E-value=83 Score=20.55 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=20.7
Q ss_pred CCCHHHHHHHHHHccCCceEEEEEee
Q 021355 241 GQGVAVSLYKALESLTSFDVQNFNFA 266 (313)
Q Consensus 241 r~glL~~Il~aLe~l~gl~V~~a~is 266 (313)
.+|.+.+++++|.+. ++.|.....+
T Consensus 13 ~~~~~~~i~~~l~~~-~i~i~~i~~~ 37 (60)
T cd04868 13 TPGVAAKIFSALAEA-GINVDMISQS 37 (60)
T ss_pred CCCHHHHHHHHHHHC-CCcEEEEEcC
Confidence 589999999999999 7888766543
No 137
>smart00338 BRLZ basic region leucin zipper.
Probab=45.80 E-value=33 Score=24.87 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 021355 166 SYLQELQMQVRKLKAEIASLEYSM 189 (313)
Q Consensus 166 ~YI~~Lq~~~~~L~~~~~~l~~~~ 189 (313)
.||..|+.+++.|+.++..|...+
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~ 49 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEI 49 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777777777777776543
No 138
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=44.50 E-value=98 Score=29.03 Aligned_cols=63 Identities=22% Similarity=0.235 Sum_probs=38.7
Q ss_pred ccccccccccc-HHHHHHHHHHHHHHHHHhccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021355 118 RNKKADRSRTL-VSERKRRGKMKEKLYGLRALVPNISKMDKASIIGDAVSYLQELQMQVRKLKAEIASLE 186 (313)
Q Consensus 118 ~~~~~~r~~h~-~~Er~RR~~in~~~~~LrslvP~~~k~dkasiL~~Ai~YI~~Lq~~~~~L~~~~~~l~ 186 (313)
++.+++|-.|. .-||.-|.+++.+..+=-+- ..|-.-..+-=.-|+.|..+.+.|+.+.+.|+
T Consensus 54 ~~rKr~RL~HLS~EEK~~RrKLKNRVAAQtaR------DrKKaRm~eme~~i~dL~een~~L~~en~~Lr 117 (292)
T KOG4005|consen 54 PKRKRRRLDHLSWEEKVQRRKLKNRVAAQTAR------DRKKARMEEMEYEIKDLTEENEILQNENDSLR 117 (292)
T ss_pred hHHHHHhhcccCHHHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777885 45688899999987764332 11222223333346777777777777776665
No 139
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=43.85 E-value=57 Score=30.59 Aligned_cols=49 Identities=12% Similarity=0.335 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhccCCCCCC---------------------CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021355 135 RGKMKEKLYGLRALVPNISK---------------------MDKASIIGDAVSYLQELQMQVRKLKAEIASLE 186 (313)
Q Consensus 135 R~~in~~~~~LrslvP~~~k---------------------~dkasiL~~Ai~YI~~Lq~~~~~L~~~~~~l~ 186 (313)
|.-|...|..|+.. +...| |-.+.||.++. ||.|++||++|+.++.+.+
T Consensus 6 ~qLI~~lf~RL~~a-e~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~A--L~~a~~ri~eLe~ql~q~~ 75 (247)
T PF09849_consen 6 RQLIDDLFSRLKQA-EAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQA--LKQAQARIQELEAQLQQAQ 75 (247)
T ss_pred HHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhc
Confidence 45677777777764 33233 23344444432 6788888888888876643
No 140
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=42.70 E-value=38 Score=23.58 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 021355 168 LQELQMQVRKLKAEIASLEYSMA 190 (313)
Q Consensus 168 I~~Lq~~~~~L~~~~~~l~~~~~ 190 (313)
|..|++|+..|+.++..|+.+..
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs 23 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFS 23 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888888888888887653
No 141
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=42.53 E-value=1e+02 Score=20.61 Aligned_cols=32 Identities=19% Similarity=0.357 Sum_probs=24.3
Q ss_pred EEEEec---CCCCHHHHHHHHHHccCCceEEEEEee
Q 021355 234 LRLVSS---RGQGVAVSLYKALESLTSFDVQNFNFA 266 (313)
Q Consensus 234 I~I~c~---~r~glL~~Il~aLe~l~gl~V~~a~is 266 (313)
|+|.+. ..++.+.+++++|.+. ++.|.....+
T Consensus 3 i~i~g~~~~~~~~~~~~i~~~l~~~-~i~v~~i~~~ 37 (65)
T cd04892 3 VSVVGAGMRGTPGVAARIFSALAEA-GINIIMISQG 37 (65)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHC-CCcEEEEEcC
Confidence 455433 5688999999999999 7888776653
No 142
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=41.85 E-value=1.2e+02 Score=21.02 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHHccCCceEEEEEee
Q 021355 240 RGQGVAVSLYKALESLTSFDVQNFNFA 266 (313)
Q Consensus 240 ~r~glL~~Il~aLe~l~gl~V~~a~is 266 (313)
..+|++.+|+++|.+. |+.|.-.+.+
T Consensus 13 ~~~~~~~~i~~~l~~~-~I~v~~i~~~ 38 (66)
T cd04922 13 GTPGVAATFFSALAKA-NVNIRAIAQG 38 (66)
T ss_pred CCccHHHHHHHHHHHC-CCCEEEEEec
Confidence 4589999999999999 8999665543
No 143
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.74 E-value=1.5e+02 Score=22.08 Aligned_cols=57 Identities=12% Similarity=0.149 Sum_probs=35.3
Q ss_pred cCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcC
Q 021355 239 SRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQ 303 (313)
Q Consensus 239 ~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~ 303 (313)
...+|.+.+|+.+|.+. |++|-.... .. .-.+|++.-.+ ...+ ..|+.+|.+-|.+-
T Consensus 12 ~~~~g~~~~IF~~La~~-~I~VDmI~~--s~--~~iSftv~~~d--~~~~-~~~~~~l~~~l~~~ 68 (75)
T cd04932 12 LHAQGFLAKVFGILAKH-NISVDLITT--SE--ISVALTLDNTG--STSD-QLLTQALLKELSQI 68 (75)
T ss_pred CCCcCHHHHHHHHHHHc-CCcEEEEee--cC--CEEEEEEeccc--cchh-HHHHHHHHHHHHhc
Confidence 45699999999999999 788877643 22 33455544322 1111 34555666666553
No 144
>COG1828 PurS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]
Probab=40.67 E-value=1.3e+02 Score=23.62 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=32.1
Q ss_pred HHHHHHHHccCCce-EEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhc
Q 021355 246 VSLYKALESLTSFD-VQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLN 302 (313)
Q Consensus 246 ~~Il~aLe~l~gl~-V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~ 302 (313)
.-|-++|..| |.. |...++.. .|.+.+.....+..-..|+.+..+.|.|
T Consensus 20 ~ti~~aL~~l-g~~~V~~vR~gK-------~~el~ld~~~~e~a~~~v~~mcekLLaN 69 (83)
T COG1828 20 ETIEKALHRL-GYNEVSDVRVGK-------VIELELDAESEEKAEEEVKEMCEKLLAN 69 (83)
T ss_pred HHHHHHHHHc-CCcccceeeeee-------EEEEEecCcchhHHHHHHHHHHHHHhCC
Confidence 4578999999 876 77776442 3333444322444567888888887766
No 145
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=39.41 E-value=1.2e+02 Score=22.05 Aligned_cols=63 Identities=16% Similarity=0.167 Sum_probs=37.1
Q ss_pred cCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCCc
Q 021355 239 SRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGFD 306 (313)
Q Consensus 239 ~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~~ 306 (313)
...+|++.+++++|.+. ++.|.-.+.+..+ .-++|.+.-.+ ..-.+..|...+...+.++.++
T Consensus 12 ~~~~~~~~~i~~~L~~~-~I~v~~i~~~~~~--~~isf~v~~~d--~~~~~~~l~~~~~~~~~~~~~~ 74 (80)
T cd04921 12 VGVPGIAARIFSALARA-GINVILISQASSE--HSISFVVDESD--ADKALEALEEEFALEIKAGLIK 74 (80)
T ss_pred CCCccHHHHHHHHHHHC-CCcEEEEEecCCc--ceEEEEEeHHH--HHHHHHHHHHHHHhhhhhCccc
Confidence 35689999999999999 7998666544222 23344443222 1112445555555555555544
No 146
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=38.73 E-value=34 Score=26.77 Aligned_cols=70 Identities=14% Similarity=0.219 Sum_probs=42.8
Q ss_pred CceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC---CeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCC
Q 021355 229 ERRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP---ERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGF 305 (313)
Q Consensus 229 ~~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~---~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~ 305 (313)
++++++.|.-+.+||-|.+++.+|... . +|.--+.-..+ +.++..| ++.+. +. .+.+.+.|.+.|+
T Consensus 8 ~~E~~~~v~~PE~pGal~~F~~~l~~~-~-nITeF~YR~~~~~~a~vlvgi--~v~~~------~~-~~~l~~~L~~~gy 76 (91)
T PF00585_consen 8 GREALFAVEFPERPGALKRFLDALGPR-N-NITEFHYRYSGDDFARVLVGI--EVPDA------ED-LEELIERLKALGY 76 (91)
T ss_dssp --EEEEEEE--BSTTHCHHHHHCCSSS-E--EEEEEEE-TTTSCSEEEEEE--E-SST------HH-HHHHHHHHTSSS-
T ss_pred CCEEEEEEECCCCccHHHHHHHHhCCC-c-eEEEEEEcCCCCCeeeEEEEE--EeCCH------HH-HHHHHHHHHHcCC
Confidence 567899999999999999999888776 2 35544443333 3444443 45432 12 5788888999998
Q ss_pred cccC
Q 021355 306 DVVT 309 (313)
Q Consensus 306 ~~~~ 309 (313)
.+..
T Consensus 77 ~~~d 80 (91)
T PF00585_consen 77 PYED 80 (91)
T ss_dssp EEEC
T ss_pred CeEE
Confidence 8764
No 147
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=38.55 E-value=52 Score=23.74 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=10.1
Q ss_pred ccHHHHHHHHHHHHHHHHHhc
Q 021355 127 TLVSERKRRGKMKEKLYGLRA 147 (313)
Q Consensus 127 h~~~Er~RR~~in~~~~~Lrs 147 (313)
...+-|+-|.+-+..+..|..
T Consensus 13 NR~AAr~~R~RKk~~~~~Le~ 33 (64)
T PF00170_consen 13 NREAARRSRQRKKQYIEELEE 33 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHH
Confidence 334445555555555555543
No 148
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=38.03 E-value=1.2e+02 Score=29.68 Aligned_cols=61 Identities=18% Similarity=0.320 Sum_probs=43.7
Q ss_pred cHHH--HHHHHHHHHHHHHHh---------ccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021355 128 LVSE--RKRRGKMKEKLYGLR---------ALVPNISKMDKASIIGDAVSYLQELQMQVRKLKAEIASLEYS 188 (313)
Q Consensus 128 ~~~E--r~RR~~in~~~~~Lr---------slvP~~~k~dkasiL~~Ai~YI~~Lq~~~~~L~~~~~~l~~~ 188 (313)
.++| +.|...++..+.+|- ++.|...+..=+.+|.++-+-.+.|+.+++.|++++.+++..
T Consensus 30 lMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD 101 (319)
T PF09789_consen 30 LMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGD 101 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 4455 456677888777776 222223334456789999999999999999999998877644
No 149
>PRK14637 hypothetical protein; Provisional
Probab=37.94 E-value=1.7e+02 Score=25.28 Aligned_cols=59 Identities=7% Similarity=0.038 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccC-ChHHHHHHHHHHH
Q 021355 240 RGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNM-NLPNLRLWVTGAL 300 (313)
Q Consensus 240 ~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i-~~~~Lk~~v~~al 300 (313)
+.-|....+-.+++++ |++++...+...++.-++.+.+.-. +...+ ++..+-++|..+|
T Consensus 6 ~~~~~~~~v~p~~~~~-g~eLvdve~~~~~~~~~lrV~ID~~-~gV~iddC~~vSr~Is~~L 65 (151)
T PRK14637 6 KDLGYFSECEPVVEGL-GCKLVDLSRRVQQAQGRVRAVIYSA-GGVGLDDCARVHRILVPRL 65 (151)
T ss_pred ccccHHHHHHHHHHhc-CCEEEEEEEEecCCCcEEEEEEECC-CCCCHHHHHHHHHHHHHHh
Confidence 4467888888999999 9999999999888766666666422 22333 5566667766666
No 150
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=37.48 E-value=1.8e+02 Score=27.99 Aligned_cols=59 Identities=19% Similarity=0.186 Sum_probs=35.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHhccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021355 125 SRTLVSERKRRGKMKEKLYGLRALVPNISKMDKASIIGDAVSYLQELQMQVRKLKAEIASLEYSM 189 (313)
Q Consensus 125 ~~h~~~Er~RR~~in~~~~~LrslvP~~~k~dkasiL~~Ai~YI~~Lq~~~~~L~~~~~~l~~~~ 189 (313)
......++.||.+.+.+..+.|-- -.|-.=-..+..-++.|..+.++|+.+..+++..+
T Consensus 220 ~~~~~~~~~~rkr~qnk~AAtRYR------qKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI 278 (294)
T KOG4571|consen 220 PYKTPEKKLRRKRQQNKAAATRYR------QKKRAEKEALLGELEGLEKRNEELKDQASELEREI 278 (294)
T ss_pred CCCCchHHHHHHHHHhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445677777777777666543 22333344555667777777777777776666554
No 151
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.59 E-value=1.5e+02 Score=20.65 Aligned_cols=27 Identities=11% Similarity=0.257 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHHHccCCceEEEEEeee
Q 021355 240 RGQGVAVSLYKALESLTSFDVQNFNFAT 267 (313)
Q Consensus 240 ~r~glL~~Il~aLe~l~gl~V~~a~ist 267 (313)
.++|.+.+++++|.+. |++|.-...+.
T Consensus 13 ~~~~~~~~if~~L~~~-~I~v~~i~q~~ 39 (66)
T cd04919 13 NMIGIAGRMFTTLADH-RINIEMISQGA 39 (66)
T ss_pred CCcCHHHHHHHHHHHC-CCCEEEEEecC
Confidence 4689999999999999 89996554433
No 152
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=36.54 E-value=36 Score=29.43 Aligned_cols=30 Identities=30% Similarity=0.355 Sum_probs=21.7
Q ss_pred ccccccccccHHHHHHHHHHHHHHHHHhcc
Q 021355 119 NKKADRSRTLVSERKRRGKMKEKLYGLRAL 148 (313)
Q Consensus 119 ~~~~~r~~h~~~Er~RR~~in~~~~~Lrsl 148 (313)
.+...|......||+||.--...|.-||..
T Consensus 7 pt~kErEnnk~RERrRRAIaakIfaGLR~~ 36 (150)
T PF05687_consen 7 PTWKERENNKRRERRRRAIAAKIFAGLRAH 36 (150)
T ss_pred ccHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556667778999997667777777775
No 153
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=36.42 E-value=34 Score=30.42 Aligned_cols=62 Identities=13% Similarity=0.080 Sum_probs=47.3
Q ss_pred EEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHH
Q 021355 232 FYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTG 298 (313)
Q Consensus 232 ~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~ 298 (313)
++|.....++||+...|.++..+. |-+++.+.++..|+.|... +++...-. ++..|+..+..
T Consensus 6 LvItavg~d~pgl~~~lar~v~s~-Gcn~leSRla~~g~~~a~i--~lisgs~d--av~~le~~l~~ 67 (176)
T COG2716 6 LVITAVGADRPGLVNTLARAVASS-GCNWLESRLAMLGEEFAGI--MLISGSWD--AVTLLEATLPL 67 (176)
T ss_pred EEEEEecCCCcHHHHHHHHHHHhc-CCcchHHHHHHhhcceeEE--EEEeeCHH--HHHHHHHHhhc
Confidence 678888899999999999999999 9999999999999877444 44443211 34555555544
No 154
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=35.84 E-value=1.7e+02 Score=21.35 Aligned_cols=48 Identities=21% Similarity=0.302 Sum_probs=33.9
Q ss_pred HHHHHHHHhccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021355 138 MKEKLYGLRALVPNISKMDKASIIGDAVSYLQELQMQVRKLKAEIASLEYSM 189 (313)
Q Consensus 138 in~~~~~LrslvP~~~k~dkasiL~~Ai~YI~~Lq~~~~~L~~~~~~l~~~~ 189 (313)
|.++...+..++ .+++..++.+|-.-+.....+++.|+.+++.++...
T Consensus 16 i~~Gae~m~~~~----~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~~~ 63 (70)
T PF02185_consen 16 IKEGAENMLQAY----STDKKKVLSEAESQLRESNQKIELLREQLEKLQQRS 63 (70)
T ss_dssp HHHHHHHHHHHH----CCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHH----ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444444444443 356666888999999999999999999998887554
No 155
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=35.84 E-value=84 Score=23.09 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021355 130 SERKRRGKMKEKLYGLRALVPNISKMDKASIIGDAVSYLQELQMQVRKLKAEIASLEY 187 (313)
Q Consensus 130 ~Er~RR~~in~~~~~LrslvP~~~k~dkasiL~~Ai~YI~~Lq~~~~~L~~~~~~l~~ 187 (313)
+|=+-+..|.+-+...++-- ..-.+-|.+|=...+.|+.+++.|+.+.+.+++
T Consensus 8 ~EirakQ~~~eEL~kvk~~n-----~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 8 AEIRAKQAIQEELTKVKSAN-----LAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444555555554444310 122345999999999999999999999988764
No 156
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=35.81 E-value=73 Score=23.03 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=26.2
Q ss_pred ceEEEEEEec----CCCCHHHHHHHHHHccCCceEEEEE
Q 021355 230 RRFYLRLVSS----RGQGVAVSLYKALESLTSFDVQNFN 264 (313)
Q Consensus 230 ~~~~I~I~c~----~r~glL~~Il~aLe~l~gl~V~~a~ 264 (313)
+-..|+|... ..+|++.++..+|.+. |+.|...+
T Consensus 5 ~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~-~I~i~~is 42 (65)
T PF13840_consen 5 DWAKISVVGPGLRFDVPGVAAKIFSALAEA-GINIFMIS 42 (65)
T ss_dssp EEEEEEEEEECGTTTSHHHHHHHHHHHHHT-TS-ECEEE
T ss_pred CEEEEEEEccccCCCcccHHHHHHHHHHHC-CCCEEEEE
Confidence 3355666665 3699999999999999 89998776
No 157
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=35.51 E-value=1.7e+02 Score=21.75 Aligned_cols=46 Identities=9% Similarity=0.243 Sum_probs=31.9
Q ss_pred eeEEEEeeCceEEEEEEecCC------CCHHHHHHHHHHccCCceEEEEEeeec
Q 021355 221 QIDVFQVEERRFYLRLVSSRG------QGVAVSLYKALESLTSFDVQNFNFATE 268 (313)
Q Consensus 221 ~VeV~~v~~~~~~I~I~c~~r------~glL~~Il~aLe~l~gl~V~~a~ist~ 268 (313)
.|.+ .+.++.+.|.|.+... ..-+..|-.+|... |+.|.+.++...
T Consensus 28 ~v~l-~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~-G~~~~~~~v~~~ 79 (85)
T PF02120_consen 28 EVKL-RLQGGNLSVQFTAENPETKELLRQNLPELKERLQAQ-GLEVVNLSVSQG 79 (85)
T ss_dssp EEEE-EEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTT-T-EEEEEEEESS
T ss_pred EEEE-EEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHC-CCCeEEEEEEEC
Confidence 3444 4667789999998765 34577888999999 999998877643
No 158
>PRK11898 prephenate dehydratase; Provisional
Probab=34.81 E-value=2.2e+02 Score=26.97 Aligned_cols=62 Identities=8% Similarity=-0.018 Sum_probs=42.2
Q ss_pred EEEEEecC-CCCHHHHHHHHHHccCCceEEEEEeeecC-CeEEEEEEEEeeCCCccCChHHHHHHHHH
Q 021355 233 YLRLVSSR-GQGVAVSLYKALESLTSFDVQNFNFATEP-ERLVLTFNLNVKDCEQNMNLPNLRLWVTG 298 (313)
Q Consensus 233 ~I~I~c~~-r~glL~~Il~aLe~l~gl~V~~a~ist~~-~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~ 298 (313)
.|-+...+ ++|.|.++|..+... |+++.+...-... ...-|.|.+.+... .+-+.++.+|..
T Consensus 198 slif~l~~~~pGsL~~~L~~F~~~-~INLt~IeSRP~~~~~~~y~F~vd~eg~---~~~~~~~~al~~ 261 (283)
T PRK11898 198 SLVLTLPNNLPGALYKALSEFAWR-GINLTRIESRPTKTGLGTYFFFIDVEGH---IDDVLVAEALKE 261 (283)
T ss_pred EEEEEeCCCCccHHHHHHHHHHHC-CCCeeeEecccCCCCCccEEEEEEEEcc---CCCHHHHHHHHH
Confidence 34455545 599999999999999 8999988766554 34467777887643 233345555543
No 159
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=33.55 E-value=3.1e+02 Score=25.38 Aligned_cols=50 Identities=12% Similarity=0.147 Sum_probs=36.8
Q ss_pred eEEEEEEecCCCC--HHHHHHHHHHccCCceEEEEEeeec--CCeEEEEEEEEee
Q 021355 231 RFYLRLVSSRGQG--VAVSLYKALESLTSFDVQNFNFATE--PERLVLTFNLNVK 281 (313)
Q Consensus 231 ~~~I~I~c~~r~g--lL~~Il~aLe~l~gl~V~~a~ist~--~~~~~~t~~~kv~ 281 (313)
.+.++|.|.+.+. +...|++.|++. ++.+.+.++... .+.+..++++..+
T Consensus 142 ~~~~~v~~~~~~~~~vr~~L~~~l~~~-~~~~~~l~~~~~~~~~~~ei~a~l~~~ 195 (225)
T PRK15385 142 RYILKVTCNKEDESAVRQWLLNIVKEA-AICLQGLGSVPAQEQGYKEIRAELVGH 195 (225)
T ss_pred EEEEEEEEcCcchhHHHHHHHHHHHhC-CCceEEeEeeecCCCCeEEEEEEEEec
Confidence 4678999988754 588899999998 799999988654 3455555555444
No 160
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=33.02 E-value=2e+02 Score=21.10 Aligned_cols=25 Identities=8% Similarity=0.240 Sum_probs=21.4
Q ss_pred cCCCCHHHHHHHHHHccCCceEEEEE
Q 021355 239 SRGQGVAVSLYKALESLTSFDVQNFN 264 (313)
Q Consensus 239 ~~r~glL~~Il~aLe~l~gl~V~~a~ 264 (313)
...+|++.+|+.+|.+. |+.|....
T Consensus 12 ~~~~g~~~~if~~L~~~-~I~v~~i~ 36 (75)
T cd04912 12 LGAHGFLAKVFEIFAKH-GLSVDLIS 36 (75)
T ss_pred CCCccHHHHHHHHHHHc-CCeEEEEE
Confidence 34589999999999999 89997764
No 161
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=32.23 E-value=2.7e+02 Score=27.73 Aligned_cols=60 Identities=10% Similarity=0.119 Sum_probs=43.3
Q ss_pred EEecCCCCHHHHHHHHHHccCCceEEEEEeeecC-CeEEEEEEEEeeCCCccCChHHHHHHHHHH
Q 021355 236 LVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP-ERLVLTFNLNVKDCEQNMNLPNLRLWVTGA 299 (313)
Q Consensus 236 I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~-~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~a 299 (313)
+.-+++||.|.++|.+|... |++.....+-... ...-|.|.+.+.++ .+-+.++.++...
T Consensus 302 ~~~~~~pGaL~~~L~~Fa~~-giNLtkIeSRP~~~~~~~Y~Ffid~eg~---~~d~~~~~aL~~l 362 (386)
T PRK10622 302 MATGQQAGALVEALLVLRNH-NLIMTKLESRPIHGNPWEEMFYLDVQAN---LRSAEMQKALKEL 362 (386)
T ss_pred EEcCCCCcHHHHHHHHHHHc-CCCeeEEEeeecCCCCceEEEEEEEeCC---CCCHHHHHHHHHH
Confidence 33468999999999999999 8999887765444 45788888888854 2224455555443
No 162
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=31.39 E-value=2.6e+02 Score=23.65 Aligned_cols=63 Identities=14% Similarity=0.146 Sum_probs=38.8
Q ss_pred EEEEEecCCCCHHHHHHHHHHccCCceE--EEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCCcccC
Q 021355 233 YLRLVSSRGQGVAVSLYKALESLTSFDV--QNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGFDVVT 309 (313)
Q Consensus 233 ~I~I~c~~r~glL~~Il~aLe~l~gl~V--~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~~~~~ 309 (313)
++-|..+++||-|++|+.+|-.. ++++ +-|-++.- +..++.++ +++ ..+...||.+.|.-+++
T Consensus 71 VlaVEmeD~PG~l~~I~~vl~d~-diNldYiYAFv~ek-~KAlli~r--~ed----------~d~~~~aLed~gi~~~~ 135 (142)
T COG4747 71 VLAVEMEDVPGGLSRIAEVLGDA-DINLDYIYAFVTEK-QKALLIVR--VED----------IDRAIKALEDAGIKLIG 135 (142)
T ss_pred EEEEEecCCCCcHHHHHHHHhhc-CcCceeeeeeeecC-ceEEEEEE--hhH----------HHHHHHHHHHcCCeecC
Confidence 34566789999999999999998 5655 33332222 33333332 332 13455677777877665
No 163
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=30.37 E-value=1.9e+02 Score=19.99 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHHHccCCceEEEEE
Q 021355 240 RGQGVAVSLYKALESLTSFDVQNFN 264 (313)
Q Consensus 240 ~r~glL~~Il~aLe~l~gl~V~~a~ 264 (313)
.++|.+.+|+++|++. |++|....
T Consensus 12 ~~~~~~~~if~~l~~~-~i~v~~i~ 35 (62)
T cd04890 12 GEVGFLRKIFEILEKH-GISVDLIP 35 (62)
T ss_pred cccCHHHHHHHHHHHc-CCeEEEEe
Confidence 4589999999999999 79988874
No 164
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=29.75 E-value=4.1e+02 Score=25.42 Aligned_cols=62 Identities=6% Similarity=0.013 Sum_probs=44.1
Q ss_pred EEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC-CeEEEEEEEEeeCCCccCChHHHHHHHHH
Q 021355 233 YLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP-ERLVLTFNLNVKDCEQNMNLPNLRLWVTG 298 (313)
Q Consensus 233 ~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~-~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~ 298 (313)
.|-+.-+.+||.|.++|..|... |++.....+-... +-.-|.|.+.+.++.. -..++++|..
T Consensus 196 sl~f~~~n~PGaL~~~L~~Fa~~-gINlTkIESRP~k~~~~~Y~F~iD~eg~~~---~~~v~~AL~e 258 (279)
T COG0077 196 SLIFSVPNKPGALYKALGVFAKR-GINLTKIESRPLKTGLGEYLFFIDIEGHID---DPLVKEALEE 258 (279)
T ss_pred EEEEEcCCCCchHHHHHHHHHHc-CcceeeEeecccCCCCeeEEEEEEEecCcC---cHhHHHHHHH
Confidence 34444458999999999999999 8988887765555 4457778888875532 2555555554
No 165
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=28.89 E-value=1.2e+02 Score=29.45 Aligned_cols=28 Identities=29% Similarity=0.484 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021355 161 IGDAVSYLQELQMQVRKLKAEIASLEYS 188 (313)
Q Consensus 161 L~~Ai~YI~~Lq~~~~~L~~~~~~l~~~ 188 (313)
|+++-+-|.+|+++++.|+++++.|++.
T Consensus 291 lDe~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 291 LDEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7888899999999999999999888754
No 166
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=28.58 E-value=3.5e+02 Score=27.58 Aligned_cols=50 Identities=8% Similarity=0.102 Sum_probs=37.2
Q ss_pred EEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC-CeEEEEEEEEeeCC
Q 021355 233 YLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP-ERLVLTFNLNVKDC 283 (313)
Q Consensus 233 ~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~-~~~~~t~~~kv~~~ 283 (313)
-|-+....++|-|.++|++++.. |+++.+...-... ...-|.|.+.+.+.
T Consensus 18 SLiFsL~d~pGaL~~vL~vFa~~-gINLthIESRPsk~~~~eY~FFVD~eg~ 68 (436)
T TIGR01268 18 SLIFSLKEEAGALAETLKLFQAH-DVNLTHIESRPSKTHPGEYEFFVEFDEA 68 (436)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHC-CCCeeEEecccCCCCCccEEEEEEEecC
Confidence 34444567899999999999999 8999987764443 34467787887643
No 167
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=28.41 E-value=2.7e+02 Score=28.58 Aligned_cols=49 Identities=6% Similarity=0.003 Sum_probs=36.9
Q ss_pred EEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC-CeEE-EEEEEEeeC
Q 021355 233 YLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP-ERLV-LTFNLNVKD 282 (313)
Q Consensus 233 ~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~-~~~~-~t~~~kv~~ 282 (313)
-|-+....++|-|.++|++++.. |+++.+...-... ...- |.|.+.++.
T Consensus 33 SLIFsL~d~pGaL~~vL~vFa~~-gINLThIESRPsk~~~~e~Y~FfVD~Eg 83 (464)
T TIGR01270 33 SIIFSLSNVVGDLSKAIAIFQDR-HINILHLESRDSKDGTSKTMDVLVDVEL 83 (464)
T ss_pred EEEEECCCCchHHHHHHHHHHHC-CCCEEEEECCcCCCCCCccEEEEEEEEc
Confidence 34444567899999999999999 8999998875554 3334 777777764
No 168
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=27.94 E-value=1.7e+02 Score=27.82 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=19.8
Q ss_pred ccHHHHHHHHHHHHHHHHHhccCCCCC
Q 021355 127 TLVSERKRRGKMKEKLYGLRALVPNIS 153 (313)
Q Consensus 127 h~~~Er~RR~~in~~~~~LrslvP~~~ 153 (313)
-...=|.||.+|.+.+..|..-=|...
T Consensus 139 sl~p~R~~r~~l~d~I~kLk~k~P~s~ 165 (271)
T PF13805_consen 139 SLQPSRDRRRKLQDEIAKLKYKDPQSP 165 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TTTT
T ss_pred HHhHHHHHhHHHHHHHHHHHhcCCCCh
Confidence 334458899999999999988756543
No 169
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=27.92 E-value=2.2e+02 Score=20.04 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHHHHccCCceEEEE
Q 021355 240 RGQGVAVSLYKALESLTSFDVQNF 263 (313)
Q Consensus 240 ~r~glL~~Il~aLe~l~gl~V~~a 263 (313)
..+|++.+++.+|.+. |+.|...
T Consensus 13 ~~~gi~~~if~aL~~~-~I~v~~~ 35 (64)
T cd04937 13 GVPGVMAKIVGALSKE-GIEILQT 35 (64)
T ss_pred CCcCHHHHHHHHHHHC-CCCEEEE
Confidence 5799999999999999 8999643
No 170
>PF11619 P53_C: Transcription factor P53 - C terminal domain; InterPro: IPR024631 The p53 tumour suppressor [, , , , ] is a protein found in increased amounts in a wide variety of transformed cells. It is also detectable in many proliferating non-transformed cells, but it is undetectable or present at low levels in resting cells. It is frequently mutated or inactivated in many types of cancer. p53 seems to act as a tumour suppressor in some, but probably not all, tumour types. p53 has been implicated in cell cycle regulation, particularly in the monitoring of genomic DNA integrity prior to replication; for this reason it has been dubbed `guardian of the genome'. p53 is a sequence-specific DNA-binding protein and transcription factor. The structure of p53 comprises 4 domains: an N-terminal transactivation domain; a central DNA-binding domain; an oligomerisation domain; and a C-terminal, basic, regulatory domain [, ]. The structure of the oligomerisation domain consists of a dimer of dimers, each dimer consisting of 2 anti-parallel alpha-helices and an anti-parallel beta-sheet. The sheets lie on opposite sides of the tetramer and the helices form an unusual 4-helix bundle [, ]. While the majority of p53 mutations found in human cancers are located in the DNA-binding domain, some are also found in the oligomerisation domain. This entry represents the C-terminal domain of Drosophila transcription factor p53. While the rest of the protein is quite conserved between the different transcription factors such as p53 and p73, the C-terminal domain is highly divergent. The Drosophila p53 structure is characterised by an additional N-terminal beta-strand and a C-terminal helix [].; PDB: 2RP4_B.
Probab=27.85 E-value=79 Score=23.68 Aligned_cols=36 Identities=8% Similarity=0.116 Sum_probs=27.3
Q ss_pred ceeEEEEeeCceEEEEEEecCCCCHHHHHHHHHHcc
Q 021355 220 MQIDVFQVEERRFYLRLVSSRGQGVAVSLYKALESL 255 (313)
Q Consensus 220 ~~VeV~~v~~~~~~I~I~c~~r~glL~~Il~aLe~l 255 (313)
.+-+|.+...+++.+-|+|++++=+|-.|=-++++-
T Consensus 5 ~dW~Vsrt~dGdYrL~itcp~Ke~LlqSIEgmi~~~ 40 (71)
T PF11619_consen 5 ADWEVSRTLDGDYRLVITCPKKEWLLQSIEGMIKEA 40 (71)
T ss_dssp -S-EEEEETTTCEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred ccceeeeccCCceEEEEecCcHHHHHHHHHHHHHHH
Confidence 345676677788999999999998888777766665
No 171
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.69 E-value=2.1e+02 Score=19.66 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHHHccCCceEEEEEe
Q 021355 240 RGQGVAVSLYKALESLTSFDVQNFNF 265 (313)
Q Consensus 240 ~r~glL~~Il~aLe~l~gl~V~~a~i 265 (313)
..++.+.+++.+|.+. |++|.-.+.
T Consensus 13 ~~~~~~~~i~~~L~~~-~i~v~~i~~ 37 (66)
T cd04916 13 NTVGVSARATAALAKA-GINIRMINQ 37 (66)
T ss_pred CCccHHHHHHHHHHHC-CCCEEEEEe
Confidence 4689999999999999 888865554
No 172
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=27.59 E-value=1.6e+02 Score=22.59 Aligned_cols=50 Identities=16% Similarity=0.282 Sum_probs=29.3
Q ss_pred HHHHHHHHHccCCce-EEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhc
Q 021355 245 AVSLYKALESLTSFD-VQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLN 302 (313)
Q Consensus 245 L~~Il~aLe~l~gl~-V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~ 302 (313)
---|.++|..| |+. |....+. -++.|.++.. ..+.....++......|.|
T Consensus 18 G~ai~~al~~l-G~~~v~~Vr~G-----K~~~l~~~~~--~~e~a~~~v~~i~~~LLaN 68 (80)
T PF02700_consen 18 GEAIKRALHRL-GYDGVKDVRVG-----KYIELELEAD--DEEEAEEQVEEICEKLLAN 68 (80)
T ss_dssp HHHHHHHHHHT-T-TTEEEEEEE-----EEEEEEEE-S--SHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHc-CCcccCcEEEE-----EEEEEEEeCC--CHHHHHHHHHHHHHHhcCC
Confidence 35688999999 888 7777644 2334444433 2333456666766666655
No 173
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=27.47 E-value=1.6e+02 Score=20.54 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021355 159 SIIGDAVSYLQELQMQVRKLKAEIASLEYS 188 (313)
Q Consensus 159 siL~~Ai~YI~~Lq~~~~~L~~~~~~l~~~ 188 (313)
..-..+-.+|+.|.+++..+.++++.|+..
T Consensus 16 ~FQ~~v~~~lq~Lt~kL~~vs~RLe~LEn~ 45 (47)
T PF10393_consen 16 AFQNKVTSALQSLTQKLDAVSKRLEALENR 45 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345678899999999999999999988754
No 174
>PHA03386 P10 fibrous body protein; Provisional
Probab=27.29 E-value=1.3e+02 Score=23.99 Aligned_cols=32 Identities=28% Similarity=0.503 Sum_probs=21.7
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021355 155 MDKASIIGDAVSYLQELQMQVRKLKAEIASLE 186 (313)
Q Consensus 155 ~dkasiL~~Ai~YI~~Lq~~~~~L~~~~~~l~ 186 (313)
|+|-+||.-...-|+.+-.++..|+.++..++
T Consensus 1 MSKpnILl~Ir~dIkavd~KVdaLQ~qV~dv~ 32 (94)
T PHA03386 1 MSKPSVLTQILDAVQEVDTKVDALQTQLNGLE 32 (94)
T ss_pred CCcchHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 57778877777777776666666666655554
No 175
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=27.19 E-value=1.1e+02 Score=21.34 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021355 167 YLQELQMQVRKLKAEIASL 185 (313)
Q Consensus 167 YI~~Lq~~~~~L~~~~~~l 185 (313)
|+..|+.+++.|+.++..|
T Consensus 26 ~~~~le~~~~~L~~en~~L 44 (54)
T PF07716_consen 26 REEELEQEVQELEEENEQL 44 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 176
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=27.14 E-value=1.9e+02 Score=25.92 Aligned_cols=62 Identities=10% Similarity=0.059 Sum_probs=43.4
Q ss_pred EEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHH
Q 021355 233 YLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTG 298 (313)
Q Consensus 233 ~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~ 298 (313)
-++|....++|.|.+|.-.+.++ |-++..+.--...+.-..-+..++++. =+.+.|...+.+
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~-ggNIt~~q~~~~~~g~~~~iYmEiEgi---~d~e~l~~~lks 65 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEE-GGNITYAQQFLEKDGEKALIYMEIEGI---DDFEKLLERLKS 65 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhc-CCceEeeehhhhccCceEEEEEEeeCC---CCHHHHHHHhhc
Confidence 46788889999999999999999 899988876555543233344455542 145666666654
No 177
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=27.03 E-value=1.4e+02 Score=25.86 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHHHHHHHHhccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021355 128 LVSERKRRGKMKEKLYGLRALVPNISKMDKASIIGDAVSYLQELQMQVRKLKAEIASLEYSM 189 (313)
Q Consensus 128 ~~~Er~RR~~in~~~~~LrslvP~~~k~dkasiL~~Ai~YI~~Lq~~~~~L~~~~~~l~~~~ 189 (313)
...+++-|.++.+.-.+++++ |..++=.+|.| |++++.+|++|.+++....
T Consensus 39 ~~~~~~l~~Ei~~l~~E~~~i----------S~qDeFAkwaK-l~Rk~~kl~~el~~~~~~~ 89 (161)
T PF04420_consen 39 SKEQRQLRKEILQLKRELNAI----------SAQDEFAKWAK-LNRKLDKLEEELEKLNKSL 89 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-----------TTTSHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcC----------CcHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 334677777777777777765 22334556777 8888889988888876543
No 178
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=26.91 E-value=3e+02 Score=21.30 Aligned_cols=46 Identities=15% Similarity=0.266 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021355 130 SERKRRGKMKEKLYGLRALVPNISKMDKASIIGDAVSYLQELQMQVRKLKAEIASLEY 187 (313)
Q Consensus 130 ~Er~RR~~in~~~~~LrslvP~~~k~dkasiL~~Ai~YI~~Lq~~~~~L~~~~~~l~~ 187 (313)
.++..|++|-..+.+|+.- |..-++-|...+.+.++|+.+++-|+.
T Consensus 13 ~~~e~k~~Li~ei~~LQ~s------------L~~L~~Rve~Vk~E~~kL~~EN~~Lq~ 58 (80)
T PF10224_consen 13 LEKEEKEELIQEILELQDS------------LEALSDRVEEVKEENEKLESENEYLQQ 58 (80)
T ss_pred HhHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888875 566667777777777777777777653
No 179
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=26.73 E-value=1.2e+02 Score=22.63 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021355 158 ASIIGDAVSYLQELQMQVRKLKAEIASLE 186 (313)
Q Consensus 158 asiL~~Ai~YI~~Lq~~~~~L~~~~~~l~ 186 (313)
+.=|++|+.-+..|+.+++.|+.+.+..+
T Consensus 39 ~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 39 ERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34488999999999999999998877654
No 180
>PLN02317 arogenate dehydratase
Probab=26.58 E-value=3.1e+02 Score=27.46 Aligned_cols=49 Identities=10% Similarity=0.219 Sum_probs=36.7
Q ss_pred EEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCe---------------EEEEEEEEeeCC
Q 021355 234 LRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPER---------------LVLTFNLNVKDC 283 (313)
Q Consensus 234 I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~---------------~~~t~~~kv~~~ 283 (313)
|-+.-..++|.|.++|.++... |+++.+...-..... +-|.|.+.++..
T Consensus 286 ivfsl~~~pG~L~k~L~~Fa~~-~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~ 349 (382)
T PLN02317 286 IVFSLEEGPGVLFKALAVFALR-DINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEAS 349 (382)
T ss_pred EEEEcCCCCchHHHHHHHHHHC-CCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcC
Confidence 3333467899999999999999 899988876554333 568888887754
No 181
>PLN02678 seryl-tRNA synthetase
Probab=26.31 E-value=4.2e+02 Score=27.02 Aligned_cols=28 Identities=14% Similarity=0.305 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021355 162 GDAVSYLQELQMQVRKLKAEIASLEYSM 189 (313)
Q Consensus 162 ~~Ai~YI~~Lq~~~~~L~~~~~~l~~~~ 189 (313)
.+.+.-++.|.++++.|+.+...++...
T Consensus 74 ~~l~~~~~~Lk~ei~~le~~~~~~~~~l 101 (448)
T PLN02678 74 TELIAETKELKKEITEKEAEVQEAKAAL 101 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888888888888887776554
No 182
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=26.04 E-value=41 Score=29.02 Aligned_cols=18 Identities=22% Similarity=0.763 Sum_probs=14.3
Q ss_pred HHHHHHHHHhccCCCCCC
Q 021355 137 KMKEKLYGLRALVPNISK 154 (313)
Q Consensus 137 ~in~~~~~LrslvP~~~k 154 (313)
-+-+|+.+|+.++|+..+
T Consensus 50 Tl~ERi~ALkDm~Pp~~R 67 (145)
T TIGR00986 50 TFTDRIYALKDIVPPTTR 67 (145)
T ss_pred cHHHHHHHHHhhCCHHHH
Confidence 367789999999998544
No 183
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.43 E-value=2.1e+02 Score=20.28 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHHHccCCceEEEEEeeecC
Q 021355 240 RGQGVAVSLYKALESLTSFDVQNFNFATEP 269 (313)
Q Consensus 240 ~r~glL~~Il~aLe~l~gl~V~~a~ist~~ 269 (313)
+.+|++.+++.+|.+. |+.|.-.+..+.+
T Consensus 12 ~~~~~~~~i~~aL~~~-~I~v~~i~~g~s~ 40 (65)
T cd04918 12 RSSLILERAFHVLYTK-GVNVQMISQGASK 40 (65)
T ss_pred CCccHHHHHHHHHHHC-CCCEEEEEecCcc
Confidence 4578999999999999 8999666554443
No 184
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.80 E-value=66 Score=23.16 Aligned_cols=18 Identities=33% Similarity=0.628 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 021355 171 LQMQVRKLKAEIASLEYS 188 (313)
Q Consensus 171 Lq~~~~~L~~~~~~l~~~ 188 (313)
++.++++++++.+.+++.
T Consensus 46 ~r~~~~~~~k~l~~le~e 63 (68)
T PF06305_consen 46 LRRRIRRLRKELKKLEKE 63 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555443
No 185
>PRK14646 hypothetical protein; Provisional
Probab=24.04 E-value=3.5e+02 Score=23.31 Aligned_cols=55 Identities=9% Similarity=0.195 Sum_probs=38.1
Q ss_pred HHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccC---ChHHHHHHHHHHHh
Q 021355 245 AVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNM---NLPNLRLWVTGALL 301 (313)
Q Consensus 245 L~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i---~~~~Lk~~v~~al~ 301 (313)
..-+-.+++++ |++++...+...++..++.+.+.-.++ .++ ++..+-++|..+|-
T Consensus 10 ~~li~p~~~~~-G~eLvdve~~~~~~~~~LrV~IDk~~g-~gVtldDC~~vSr~is~~LD 67 (155)
T PRK14646 10 EILLEKVANEF-DLKICSLNIQTNQNPIVIKIIIKKTNG-DDISLDDCALFNTPASEEIE 67 (155)
T ss_pred HHHHHHHHHHc-CCEEEEEEEEeCCCCeEEEEEEECCCC-CCccHHHHHHHHHHHHHHhC
Confidence 34455678888 999999999988877766766653322 334 55667777777664
No 186
>PRK14638 hypothetical protein; Provisional
Probab=23.70 E-value=2.7e+02 Score=23.93 Aligned_cols=54 Identities=9% Similarity=0.052 Sum_probs=36.7
Q ss_pred HHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccC-ChHHHHHHHHHHHhc
Q 021355 248 LYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNM-NLPNLRLWVTGALLN 302 (313)
Q Consensus 248 Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i-~~~~Lk~~v~~al~~ 302 (313)
+-.+++++ |++++...+...++.-++.+.+.-.+|...+ ++..+-++|..+|-.
T Consensus 14 ~~~i~~~~-G~elvdve~~~~~~~~~lrV~ID~~~G~v~lddC~~vSr~is~~LD~ 68 (150)
T PRK14638 14 AERIAEEQ-GLEIFDVQYRRESRGWVLRIIIDNPVGYVSVRDCELFSREIERFLDR 68 (150)
T ss_pred HHHHHHHc-CCEEEEEEEEecCCCcEEEEEEECCCCCcCHHHHHHHHHHHHHHhcc
Confidence 34567788 9999999999877666566655433332333 666777777777753
No 187
>PLN02705 beta-amylase
Probab=23.21 E-value=3.3e+02 Score=29.11 Aligned_cols=29 Identities=34% Similarity=0.551 Sum_probs=20.1
Q ss_pred cccccccccHHHHHHHHHHHHHHHHHhcc
Q 021355 120 KKADRSRTLVSERKRRGKMKEKLYGLRAL 148 (313)
Q Consensus 120 ~~~~r~~h~~~Er~RR~~in~~~~~Lrsl 148 (313)
+...|......||+||.--...|.-||..
T Consensus 81 ~~~e~e~~~~rer~rrai~~ki~aglr~~ 109 (681)
T PLN02705 81 REKEKERTKLRERHRRAITSRMLAGLRQY 109 (681)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 34456677788999997666666666653
No 188
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=22.99 E-value=2.9e+02 Score=21.18 Aligned_cols=49 Identities=22% Similarity=0.407 Sum_probs=28.7
Q ss_pred HHHHHHHHHhccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021355 137 KMKEKLYGLRALVPNISKMDKASIIGDAVSYLQELQMQVRKLKAEIASLEY 187 (313)
Q Consensus 137 ~in~~~~~LrslvP~~~k~dkasiL~~Ai~YI~~Lq~~~~~L~~~~~~l~~ 187 (313)
.|+.+|...|++|-..+-+++. +.+--.+|+.|+++++..++-...++.
T Consensus 32 ~lk~Klq~ar~~i~~lpgi~~s--~eeq~~~i~~Le~~i~~k~~~L~~~~~ 80 (83)
T PF07544_consen 32 SLKHKLQKARAAIRELPGIDRS--VEEQEEEIEELEEQIRKKREVLQKFKE 80 (83)
T ss_pred HHHHHHHHHHHHHHhCCCccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555554333333322 455567888888888887776666543
No 189
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=22.88 E-value=96 Score=31.55 Aligned_cols=68 Identities=19% Similarity=0.189 Sum_probs=33.4
Q ss_pred EEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEE-EeeC-CCccCChHHHHHHHHHHHh
Q 021355 232 FYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNL-NVKD-CEQNMNLPNLRLWVTGALL 301 (313)
Q Consensus 232 ~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~-kv~~-~~~~i~~~~Lk~~v~~al~ 301 (313)
..|.+.-++..|+- ++...+-.-|.++++.-+.++-=.-.-+|.+ ++.+ +.+++..++.-..|++=||
T Consensus 171 a~iTl~PnRG~G~~--~~~~~~g~~G~~Ii~~A~VsvPL~~~~tl~aG~ipd~~GYE~q~~~q~~~lTHNLL 240 (514)
T PF11336_consen 171 AEITLAPNRGAGIT--LFDNSHGGNGNSIIHEASVSVPLSDTTTLIAGQIPDWGGYEVQQSNQMLTLTHNLL 240 (514)
T ss_pred ceEEEccCCCCchh--hhhcccCCcccceeeeeEEEeecCCceeEEeecccCccceeeccccccceeeecee
Confidence 45666666666731 1222222236666664443333111113333 4554 4477777777666666554
No 190
>PRK14639 hypothetical protein; Provisional
Probab=22.88 E-value=2.7e+02 Score=23.58 Aligned_cols=53 Identities=9% Similarity=0.061 Sum_probs=37.5
Q ss_pred HHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccC-ChHHHHHHHHHHHhc
Q 021355 248 LYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNM-NLPNLRLWVTGALLN 302 (313)
Q Consensus 248 Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i-~~~~Lk~~v~~al~~ 302 (313)
+-.+++++ |++++...+...++.-++.+.+.-.++ ..+ ++..+-++|..+|-.
T Consensus 3 ~ep~~~~~-G~eLvdve~~~~~~~~~lrV~Id~~~g-v~iddC~~vSr~is~~LD~ 56 (140)
T PRK14639 3 LEALCKEC-GVSFYDDELVSENGRKIYRVYITKEGG-VNLDDCERLSELLSPIFDV 56 (140)
T ss_pred hhHhHHhC-CCEEEEEEEEecCCCcEEEEEEeCCCC-CCHHHHHHHHHHHHHHhcc
Confidence 44678899 999999999988876666666643222 333 566777777777753
No 191
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=22.83 E-value=2.7e+02 Score=26.82 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=17.4
Q ss_pred HHHHHHHHHHccCCceEEEEE
Q 021355 244 VAVSLYKALESLTSFDVQNFN 264 (313)
Q Consensus 244 lL~~Il~aLe~l~gl~V~~a~ 264 (313)
-|-.-+..|+.++|+.++.++
T Consensus 280 ~Lk~~~~~Le~~~gw~~~~~~ 300 (325)
T PF08317_consen 280 RLKAKVDALEKLTGWKIVSIS 300 (325)
T ss_pred HHHHHHHHHHHHHCcEEEEEe
Confidence 566677889999999998887
No 192
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=22.65 E-value=2.7e+02 Score=24.87 Aligned_cols=65 Identities=11% Similarity=0.190 Sum_probs=43.9
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeec--CC----eEEEEEEEEeeCCCccCChHHHHHHHHHH
Q 021355 231 RFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATE--PE----RLVLTFNLNVKDCEQNMNLPNLRLWVTGA 299 (313)
Q Consensus 231 ~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~--~~----~~~~t~~~kv~~~~~~i~~~~Lk~~v~~a 299 (313)
-+.+++...+|||++-++.+.|..+ |+++.+....+. .+ .|...+++.+. .+++.+.|+..+.+.
T Consensus 92 ~v~v~v~a~DrpgIv~~~T~lf~~~-~inie~L~~~~~~a~~s~~~lfha~it~~lP---a~~~i~~l~~~f~al 162 (176)
T COG2716 92 PVWVYVDANDRPGIVEEFTALFDGH-GINIENLVSRTYPAPGSSAPLFHAQITARLP---ANLSISALRDAFEAL 162 (176)
T ss_pred eEEEEEEecCCccHHHHHHHHHHhc-CCchhhceeeeeecCCCCccceehhhhccCC---CcCcHHHHHHHHHHH
Confidence 3677888999999999999999999 788765444332 22 22333333333 456778888777654
No 193
>PF15392 Joubert: Joubert syndrome-associated
Probab=22.20 E-value=1.9e+02 Score=28.20 Aligned_cols=59 Identities=19% Similarity=0.226 Sum_probs=36.2
Q ss_pred ccccccccccHHHHHHHHHHHHHHHHHhccC-----CCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 021355 119 NKKADRSRTLVSERKRRGKMKEKLYGLRALV-----PNISKMDKASIIGDAVSYLQELQMQVRK 177 (313)
Q Consensus 119 ~~~~~r~~h~~~Er~RR~~in~~~~~Lrslv-----P~~~k~dkasiL~~Ai~YI~~Lq~~~~~ 177 (313)
..+.+|.-.....|+||++|-+.+..|..+- |-+++.+-..+-.+-|.-.++++.+..+
T Consensus 52 tekERrEIq~WMkRKrkERmaEYl~qlaEkR~qEH~PF~p~~~p~~~TSreIrl~QK~K~EKdR 115 (329)
T PF15392_consen 52 TEKERREIQAWMKRKRKERMAEYLKQLAEKREQEHKPFCPRSNPFYMTSREIRLRQKMKEEKDR 115 (329)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcccHHHHHHHHHHHHHHHH
Confidence 3455677788999999999999888776554 4455444333333444444444444433
No 194
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=22.11 E-value=3.3e+02 Score=24.89 Aligned_cols=62 Identities=11% Similarity=0.176 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHccC-CceEEEEEeeecCC-eEEEEEEEEeeCCCccCChHHHHHHHHHHHhcC
Q 021355 242 QGVAVSLYKALESLT-SFDVQNFNFATEPE-RLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQ 303 (313)
Q Consensus 242 ~glL~~Il~aLe~l~-gl~V~~a~ist~~~-~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~ 303 (313)
+....++.+++++.+ ..+|.+..+-..|. .+...++++++.+..--+..++++.+++.+.++
T Consensus 204 ~~~~~~i~~~i~~~~~v~~v~~~~~~~~g~~~~~v~i~v~v~~~~~v~~~~~i~~~i~~~l~~~ 267 (284)
T PF01545_consen 204 PELVEKIRRIIESVPGVIEVHDLRVWQVGRNKYVVEIHVQVDPDMSVEEAHEIRERIEKRLREK 267 (284)
T ss_dssp HHHHHHHHHHHHHTSS-SEEEEEEEEEETT-EEEEEEEEEETTTSBHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHhhccCCceEeccceEEEEecCCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 345577788886653 47899999999998 888889998876533335677888999988886
No 195
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=21.83 E-value=3.3e+02 Score=19.90 Aligned_cols=40 Identities=8% Similarity=-0.003 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCC
Q 021355 242 QGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDC 283 (313)
Q Consensus 242 ~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~ 283 (313)
..+++.+.+.+.=- ++++++++....+..+-.+.+.+.+.
T Consensus 16 ~piis~l~~~~~v~--~nIl~g~i~~i~~~~~G~l~l~l~g~ 55 (76)
T PF09383_consen 16 EPIISQLIREFGVD--VNILHGNIEEIQGTPFGILILELPGD 55 (76)
T ss_dssp SCHHHHHHHHHT-E--EEEEEEEEEEETTEEEEEEEEEEES-
T ss_pred chHHHHHHHHhCCC--EEEEEEEeEEcCCeeEEEEEEEEECC
Confidence 66888777777655 89999999999999999999998743
No 196
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=21.70 E-value=63 Score=28.22 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=44.1
Q ss_pred ccHHHHHHHHHHHHHHHHHhccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021355 127 TLVSERKRRGKMKEKLYGLRALVPNISKMDKASIIGDAVSYLQELQMQVRKLKAEIAS 184 (313)
Q Consensus 127 h~~~Er~RR~~in~~~~~LrslvP~~~k~dkasiL~~Ai~YI~~Lq~~~~~L~~~~~~ 184 (313)
....++..+..+.....+++.++-... .|+++.+..=.+|++.|+++++++++..+.
T Consensus 116 l~~l~~~~~~~~~~i~~~~r~l~~e~~-~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~ 172 (174)
T COG1076 116 LKVLGVEIKADQDAIKKAYRKLLSEQH-PDKAAAKGLKLEFIEKLKEKLQEIQEAYED 172 (174)
T ss_pred HHHhcCchhhhHHHHHHHHHHHHHhcC-HHHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 344456666777777777888765444 799999988899999999999999887654
No 197
>PRK14645 hypothetical protein; Provisional
Probab=21.63 E-value=4.4e+02 Score=22.78 Aligned_cols=57 Identities=16% Similarity=0.178 Sum_probs=37.9
Q ss_pred HHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCC-CccC-ChHHHHHHHHHHHh
Q 021355 244 VAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDC-EQNM-NLPNLRLWVTGALL 301 (313)
Q Consensus 244 lL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~-~~~i-~~~~Lk~~v~~al~ 301 (313)
+-..+-.+++++ |++++...+...++.-++.+.+.-+++ ...+ ++..+-++|..+|-
T Consensus 11 i~~li~~~~~~~-G~elvdve~~~~~~~~ilrV~ID~~~~~~v~lddC~~vSr~is~~LD 69 (154)
T PRK14645 11 LQQLAEGALEPL-GYEVLEVQVQRSGGKRIVLVRIDRKDEQPVTVEDLERASRALEAELD 69 (154)
T ss_pred HHHHHHHHHHHc-CCEEEEEEEEeCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhc
Confidence 334445678888 999999999887765555666543222 2333 56677888877774
No 198
>PF14992 TMCO5: TMCO5 family
Probab=21.61 E-value=1.4e+02 Score=28.49 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021355 159 SIIGDAVSYLQELQMQVRKLKAEIASL 185 (313)
Q Consensus 159 siL~~Ai~YI~~Lq~~~~~L~~~~~~l 185 (313)
.+..+++.||+.||..+++++++++.+
T Consensus 144 ~l~eDq~~~i~klkE~L~rmE~ekE~~ 170 (280)
T PF14992_consen 144 QLCEDQANEIKKLKEKLRRMEEEKEML 170 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999999999999987754
No 199
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=21.61 E-value=5.3e+02 Score=22.24 Aligned_cols=61 Identities=18% Similarity=0.227 Sum_probs=41.3
Q ss_pred ccHHHHHHHHHHHHHHHHHhccCCCCCCCChhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021355 127 TLVSERKRRGKMKEKLYGLRALVPNISKMDKASI-IGDAVSYLQELQMQVRKLKAEIASLEYS 188 (313)
Q Consensus 127 h~~~Er~RR~~in~~~~~LrslvP~~~k~dkasi-L~~Ai~YI~~Lq~~~~~L~~~~~~l~~~ 188 (313)
.....+..|+++......|+.--..... ....- ...+++++..|+..++.|+.+.+.++..
T Consensus 113 ~l~~~k~~r~k~~~~~~~l~~~~~~~~~-P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~ 174 (177)
T PF13870_consen 113 ELYRVKKERDKLRKQNKKLRQQGGLLGV-PALLRDYDKTKEEVEELRKEIKELERKVEILEMR 174 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445577778888888888754333221 12221 5678889999999999999988877644
No 200
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=20.99 E-value=1.9e+02 Score=21.22 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 021355 166 SYLQELQMQVRKLKAEIASLEYSM 189 (313)
Q Consensus 166 ~YI~~Lq~~~~~L~~~~~~l~~~~ 189 (313)
+-|+.|+.++.+|+.++.-|+...
T Consensus 21 ~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 21 EQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456778888888888888777654
No 201
>PF02370 M: M protein repeat; InterPro: IPR003345 This short repeat is found in multiple copies in bacterial M proteins. The M proteins bind to IgA and are closely associated with virulence. The M protein has been postulated to be a major group A streptococcal (GAS) virulence factor because of its contribution to the bacterial resistance to opsonophagocytosis [].; PDB: 2KK9_A.
Probab=20.59 E-value=1.8e+02 Score=16.90 Aligned_cols=17 Identities=29% Similarity=0.331 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021355 169 QELQMQVRKLKAEIASL 185 (313)
Q Consensus 169 ~~Lq~~~~~L~~~~~~l 185 (313)
++|+.+.++|+++.+.+
T Consensus 4 k~lEa~~qkLe~e~q~~ 20 (21)
T PF02370_consen 4 KQLEADHQKLEAEKQIS 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 56778888888777654
No 202
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.52 E-value=1.2e+03 Score=26.02 Aligned_cols=76 Identities=9% Similarity=0.038 Sum_probs=39.0
Q ss_pred eeCceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCC
Q 021355 227 VEERRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQG 304 (313)
Q Consensus 227 v~~~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~ 304 (313)
+++-.+++...-...+.-|..+...|..-. -+-+-+-++..++.+.+.+.+- ++-...++...|-..+...+-..|
T Consensus 772 i~g~~~~~~~~~~~d~~~Lr~~a~~lk~k~-~~~vivl~~~~~~Kv~~~~~v~-~~~~~~~~a~~lvk~la~~~gG~G 847 (879)
T COG0013 772 IGGVKVLAKEVDGADMKELREIADDLKKKL-GSAVIVLASVADGKVSLVVAVS-KDLTDKVKAGELVKELAAIVGGKG 847 (879)
T ss_pred eCCEEEEEEEecCCCHHHHHHHHHHHHhhc-CCcEEEEEEecCCeEEEEEEec-hhhhcccCHHHHHHHHHHhcCCCC
Confidence 334334444333345566777777776631 1222223333444554444443 322333778888877777666555
No 203
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=20.12 E-value=1.8e+02 Score=22.39 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021355 161 IGDAVSYLQELQMQVRKLKAEIASLEYS 188 (313)
Q Consensus 161 L~~Ai~YI~~Lq~~~~~L~~~~~~l~~~ 188 (313)
|.+-.+.-..|+.++++|+++++++...
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445566677888888777777666544
No 204
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=20.05 E-value=3.4e+02 Score=19.46 Aligned_cols=40 Identities=20% Similarity=0.345 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 021355 132 RKRRGKMKEKLYGLRALVPNISKMDKASIIGDAVSYLQELQMQVRKL 178 (313)
Q Consensus 132 r~RR~~in~~~~~LrslvP~~~k~dkasiL~~Ai~YI~~Lq~~~~~L 178 (313)
|..|=.....+..+..++- .. =.++|.+||+.+-++++.+
T Consensus 17 R~~RHD~~NhLqvI~gllq-lg------~~~~a~eYi~~~~~~~~~~ 56 (62)
T PF14689_consen 17 RAQRHDFLNHLQVIYGLLQ-LG------KYEEAKEYIKELSKDLQQE 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH-CC------CHHHHHHHHHHHHHHHHHH
Confidence 6667777777888887741 12 2678899999998877766
Done!