Query 021355
Match_columns 313
No_of_seqs 259 out of 1295
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 16:26:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021355.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021355hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.7 8.9E-18 3E-22 129.6 7.2 69 121-189 4-73 (82)
2 1hlo_A Protein (transcription 99.6 6.4E-16 2.2E-20 118.5 6.6 68 120-187 9-78 (80)
3 1nkp_B MAX protein, MYC proto- 99.6 9.8E-16 3.4E-20 118.2 7.5 66 123-188 2-69 (83)
4 4ati_A MITF, microphthalmia-as 99.6 8.8E-16 3E-20 126.1 6.4 66 119-184 23-92 (118)
5 1nkp_A C-MYC, MYC proto-oncoge 99.6 1.8E-15 6E-20 118.2 7.3 65 122-186 5-72 (88)
6 4h10_B Circadian locomoter out 99.6 1.1E-15 3.8E-20 114.4 5.8 61 119-179 4-65 (71)
7 1nlw_A MAD protein, MAX dimeri 99.6 7.8E-15 2.7E-19 112.6 8.4 65 124-188 2-69 (80)
8 1an4_A Protein (upstream stimu 99.6 9.1E-16 3.1E-20 113.1 2.3 56 121-176 3-64 (65)
9 1a0a_A BHLH, protein (phosphat 99.5 9E-16 3.1E-20 112.6 1.3 53 123-175 2-61 (63)
10 4h10_A ARYL hydrocarbon recept 99.5 9.8E-15 3.3E-19 110.1 2.6 55 119-173 5-63 (73)
11 3u5v_A Protein MAX, transcript 99.4 5.2E-14 1.8E-18 106.9 3.8 59 121-179 3-65 (76)
12 1mdy_A Protein (MYOD BHLH doma 99.2 4.5E-12 1.5E-16 94.2 4.5 57 119-175 8-66 (68)
13 2ql2_B Neurod1, neurogenic dif 99.2 1.1E-11 3.8E-16 89.9 5.5 54 123-176 2-58 (60)
14 4f3l_A Mclock, circadian locom 99.0 3.5E-10 1.2E-14 108.1 5.9 57 118-174 7-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.8 1.5E-09 5E-14 105.0 4.7 57 118-174 8-68 (387)
16 4ath_A MITF, microphthalmia-as 98.8 1.3E-08 4.5E-13 77.8 7.1 51 135-185 4-58 (83)
17 2lfh_A DNA-binding protein inh 98.7 3.4E-09 1.1E-13 78.1 1.4 44 130-173 21-67 (68)
18 4aya_A DNA-binding protein inh 98.1 7.3E-06 2.5E-10 64.4 6.4 47 130-176 32-81 (97)
19 1zpv_A ACT domain protein; str 97.5 0.0012 4E-08 49.9 10.5 72 231-306 5-76 (91)
20 1u8s_A Glycine cleavage system 96.8 0.0039 1.3E-07 53.8 8.7 72 231-307 6-77 (192)
21 2nyi_A Unknown protein; protei 96.5 0.0026 8.9E-08 55.4 4.9 50 231-281 5-54 (195)
22 2nyi_A Unknown protein; protei 96.4 0.012 4.1E-07 51.1 8.5 71 231-306 93-169 (195)
23 1u8s_A Glycine cleavage system 96.0 0.042 1.4E-06 47.2 10.1 72 231-306 93-172 (192)
24 2ko1_A CTR148A, GTP pyrophosph 95.8 0.046 1.6E-06 40.3 8.1 50 231-281 5-54 (88)
25 3n0v_A Formyltetrahydrofolate 94.1 0.33 1.1E-05 44.9 10.5 71 231-305 8-80 (286)
26 3o1l_A Formyltetrahydrofolate 94.0 0.23 7.8E-06 46.3 9.4 72 230-304 21-94 (302)
27 3obi_A Formyltetrahydrofolate 94.0 0.3 1E-05 45.1 10.2 74 230-306 5-80 (288)
28 3p96_A Phosphoserine phosphata 93.7 0.2 6.9E-06 47.7 8.7 73 231-306 12-84 (415)
29 3lou_A Formyltetrahydrofolate 93.4 0.45 1.5E-05 44.1 10.2 74 230-304 9-84 (292)
30 3nrb_A Formyltetrahydrofolate 90.6 1.2 4.1E-05 41.1 9.5 70 230-304 6-77 (287)
31 2fgc_A Acetolactate synthase, 88.9 0.82 2.8E-05 39.9 6.5 47 232-279 30-78 (193)
32 2f1f_A Acetolactate synthase i 88.4 1.8 6.3E-05 36.6 8.3 47 232-279 4-52 (164)
33 2f06_A Conserved hypothetical 87.8 1.3 4.5E-05 35.7 6.9 63 234-309 75-137 (144)
34 2pc6_A Probable acetolactate s 86.6 1.9 6.6E-05 36.5 7.4 47 232-279 5-53 (165)
35 2jhe_A Transcription regulator 86.0 1.6 5.4E-05 35.6 6.5 35 233-268 2-36 (190)
36 1y7p_A Hypothetical protein AF 85.2 2.6 8.8E-05 37.6 7.6 59 232-297 5-68 (223)
37 2wt7_A Proto-oncogene protein 82.0 4.3 0.00015 28.7 6.4 46 131-189 1-46 (63)
38 2f06_A Conserved hypothetical 78.2 11 0.00038 30.1 8.6 34 233-267 8-41 (144)
39 1zme_C Proline utilization tra 62.3 7.9 0.00027 27.0 3.8 24 166-189 44-67 (70)
40 2oqq_A Transcription factor HY 61.2 9 0.00031 25.1 3.4 24 166-189 3-26 (42)
41 2l5g_A GPS2 protein, G protein 57.4 18 0.00063 23.0 4.3 31 155-185 4-34 (38)
42 1dh3_A Transcription factor CR 56.7 12 0.00041 25.7 3.8 24 166-189 22-45 (55)
43 3v86_A De novo design helix; c 53.1 13 0.00045 21.4 2.8 22 167-188 1-22 (27)
44 2jee_A YIIU; FTSZ, septum, coi 52.9 20 0.00068 26.8 4.6 26 161-186 15-40 (81)
45 3ra3_B P2F; coiled coil domain 50.4 13 0.00044 21.6 2.5 22 168-189 2-23 (28)
46 2qmx_A Prephenate dehydratase; 49.9 69 0.0024 29.1 8.8 62 233-298 202-264 (283)
47 2akf_A Coronin-1A; coiled coil 49.5 25 0.00086 21.2 3.8 24 166-189 6-29 (32)
48 2er8_A Regulatory protein Leu3 47.1 9.9 0.00034 26.8 2.1 22 166-187 49-70 (72)
49 2dgc_A Protein (GCN4); basic d 45.6 22 0.00076 25.1 3.8 23 166-188 30-52 (63)
50 2ke4_A CDC42-interacting prote 45.4 49 0.0017 25.4 6.0 32 157-188 60-91 (98)
51 3he4_B Synzip5; heterodimeric 45.2 39 0.0013 21.7 4.4 26 161-186 5-30 (46)
52 1pd7_B MAD1; PAH2, SIN3, eukar 44.8 28 0.00096 20.4 3.4 19 155-173 2-20 (26)
53 2dt9_A Aspartokinase; protein- 44.3 88 0.003 25.5 8.0 52 227-279 12-67 (167)
54 1jnm_A Proto-oncogene C-JUN; B 41.8 28 0.00094 24.2 3.8 23 166-188 22-44 (62)
55 3mwb_A Prephenate dehydratase; 41.3 97 0.0033 28.6 8.5 63 232-298 202-266 (313)
56 3p96_A Phosphoserine phosphata 40.3 1.1E+02 0.0038 28.4 9.0 72 232-308 102-174 (415)
57 2dtj_A Aspartokinase; protein- 39.9 1.4E+02 0.0048 24.6 8.7 37 227-264 11-48 (178)
58 1t2k_D Cyclic-AMP-dependent tr 38.8 33 0.0011 23.7 3.8 23 166-188 22-44 (61)
59 2lqj_A Mg2+ transport protein; 38.1 1.3E+02 0.0043 22.7 7.7 68 231-303 8-78 (94)
60 1gd2_E Transcription factor PA 36.7 36 0.0012 24.6 3.7 12 167-178 30-41 (70)
61 2qmw_A PDT, prephenate dehydra 36.5 1.1E+02 0.0036 27.6 7.8 61 233-298 188-252 (267)
62 1kd8_B GABH BLL, GCN4 acid bas 36.3 42 0.0014 21.1 3.4 20 168-187 3-22 (36)
63 2re1_A Aspartokinase, alpha an 33.8 1E+02 0.0035 25.1 6.8 51 227-278 21-73 (167)
64 1xkm_B Distinctin chain B; por 32.9 54 0.0018 18.7 3.2 20 158-177 3-22 (26)
65 3luy_A Probable chorismate mut 32.5 2.4E+02 0.0083 26.1 9.8 56 240-299 217-273 (329)
66 2re1_A Aspartokinase, alpha an 31.7 1.4E+02 0.0049 24.1 7.3 35 229-264 101-138 (167)
67 3c3g_A Alpha/beta peptide with 31.6 57 0.0019 20.1 3.4 21 168-188 2-22 (33)
68 3m48_A General control protein 31.6 35 0.0012 21.1 2.5 20 169-188 3-22 (33)
69 3muj_A Transcription factor CO 31.0 57 0.002 26.7 4.5 34 138-171 96-133 (138)
70 2wq1_A General control protein 30.3 62 0.0021 20.0 3.4 21 168-188 2-22 (33)
71 3fx7_A Putative uncharacterize 30.0 1.1E+02 0.0037 23.4 5.7 22 161-182 65-86 (94)
72 2wuj_A Septum site-determining 29.9 54 0.0018 22.5 3.6 28 160-187 28-55 (57)
73 2oxj_A Hybrid alpha/beta pepti 29.6 64 0.0022 20.0 3.4 21 168-188 3-23 (34)
74 3pt3_A E3 ubiquitin-protein li 29.2 24 0.00081 28.1 1.9 21 288-308 98-118 (118)
75 1hwt_C Protein (heme activator 29.0 19 0.00063 25.8 1.1 22 165-186 57-78 (81)
76 1kd8_A GABH AIV, GCN4 acid bas 27.8 48 0.0016 20.9 2.6 18 169-186 4-21 (36)
77 3c3f_A Alpha/beta peptide with 26.5 78 0.0027 19.6 3.4 21 168-188 3-23 (34)
78 3w03_C DNA repair protein XRCC 25.7 82 0.0028 27.0 4.8 30 159-188 145-174 (184)
79 3ab4_A Aspartokinase; aspartat 25.4 4.2E+02 0.014 24.8 10.6 52 227-279 260-315 (421)
80 2rp4_A Transcription factor P5 24.6 49 0.0017 24.2 2.6 36 220-255 10-45 (76)
81 2hy6_A General control protein 24.1 62 0.0021 20.1 2.6 19 169-187 4-22 (34)
82 3s1t_A Aspartokinase; ACT doma 23.9 3.1E+02 0.01 22.6 8.2 52 227-279 12-67 (181)
83 1gmj_A ATPase inhibitor; coile 23.6 2.1E+02 0.0072 21.3 6.1 45 135-187 35-79 (84)
84 2dt9_A Aspartokinase; protein- 23.2 2.2E+02 0.0074 23.0 6.9 36 228-264 92-130 (167)
85 1pyi_A Protein (pyrimidine pat 23.2 60 0.0021 23.8 3.1 22 166-187 48-69 (96)
86 1uii_A Geminin; human, DNA rep 22.9 1.2E+02 0.0041 22.7 4.5 18 129-147 33-50 (83)
87 3coq_A Regulatory protein GAL4 22.8 72 0.0025 22.9 3.4 21 166-186 45-65 (89)
88 1uo4_A General control protein 22.2 72 0.0024 19.8 2.6 21 168-188 3-23 (34)
89 3plt_A Sphingolipid long chain 21.8 1.4E+02 0.0049 26.5 5.7 31 123-153 101-131 (234)
90 2v4h_A NF-kappa-B essential mo 21.7 2E+02 0.0069 22.6 5.9 11 148-158 14-24 (110)
91 1p3q_Q VPS9P, vacuolar protein 21.7 60 0.0021 22.3 2.5 25 129-153 3-27 (54)
92 2zzt_A Putative uncharacterize 21.3 2E+02 0.0069 21.5 5.9 60 244-303 11-71 (107)
93 1gk7_A Vimentin; intermediate 20.2 80 0.0028 20.1 2.7 21 163-183 17-37 (39)
94 2bni_A General control protein 20.0 84 0.0029 19.5 2.6 21 168-188 3-23 (34)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.72 E-value=8.9e-18 Score=129.61 Aligned_cols=69 Identities=28% Similarity=0.441 Sum_probs=64.9
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHhccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021355 121 KADRSRTLVSERKRRGKMKEKLYGLRALVPNI-SKMDKASIIGDAVSYLQELQMQVRKLKAEIASLEYSM 189 (313)
Q Consensus 121 ~~~r~~h~~~Er~RR~~in~~~~~LrslvP~~-~k~dkasiL~~Ai~YI~~Lq~~~~~L~~~~~~l~~~~ 189 (313)
..+|..|+.+||+||++||++|.+|+++||++ .|++|++||.+||+||++||.+++.|+++++.|+...
T Consensus 4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999997 8999999999999999999999999999999997654
No 2
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.61 E-value=6.4e-16 Score=118.54 Aligned_cols=68 Identities=28% Similarity=0.462 Sum_probs=63.5
Q ss_pred cccccccccHHHHHHHHHHHHHHHHHhccCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021355 120 KKADRSRTLVSERKRRGKMKEKLYGLRALVPNI--SKMDKASIIGDAVSYLQELQMQVRKLKAEIASLEY 187 (313)
Q Consensus 120 ~~~~r~~h~~~Er~RR~~in~~~~~LrslvP~~--~k~dkasiL~~Ai~YI~~Lq~~~~~L~~~~~~l~~ 187 (313)
...+|..|+.+||+||..||+.|..|+++||.. .|++|++||..||+||+.|++++++|+++++.|+.
T Consensus 9 ~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 9 DADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356789999999999999999999999999985 69999999999999999999999999999998864
No 3
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.61 E-value=9.8e-16 Score=118.24 Aligned_cols=66 Identities=29% Similarity=0.441 Sum_probs=60.7
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhccCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021355 123 DRSRTLVSERKRRGKMKEKLYGLRALVPN--ISKMDKASIIGDAVSYLQELQMQVRKLKAEIASLEYS 188 (313)
Q Consensus 123 ~r~~h~~~Er~RR~~in~~~~~LrslvP~--~~k~dkasiL~~Ai~YI~~Lq~~~~~L~~~~~~l~~~ 188 (313)
+|..|+.+||+||.+||+.|..|+++||. ..|++|++||..||+||+.|+.+++.|+.+++.|+..
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~ 69 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQ 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999997 4799999999999999999999999998888877643
No 4
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.60 E-value=8.8e-16 Score=126.12 Aligned_cols=66 Identities=21% Similarity=0.435 Sum_probs=52.8
Q ss_pred ccccccccccHHHHHHHHHHHHHHHHHhccCCCCC----CCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021355 119 NKKADRSRTLVSERKRRGKMKEKLYGLRALVPNIS----KMDKASIIGDAVSYLQELQMQVRKLKAEIAS 184 (313)
Q Consensus 119 ~~~~~r~~h~~~Er~RR~~in~~~~~LrslvP~~~----k~dkasiL~~Ai~YI~~Lq~~~~~L~~~~~~ 184 (313)
+.+.+|..|+.+||+||++||++|.+|++|||++. |++|++||.+||+||++||++++.|+++...
T Consensus 23 k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~ 92 (118)
T 4ati_A 23 KERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENR 92 (118)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999863 7889999999999999999999999876443
No 5
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.59 E-value=1.8e-15 Score=118.20 Aligned_cols=65 Identities=31% Similarity=0.495 Sum_probs=59.2
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021355 122 ADRSRTLVSERKRRGKMKEKLYGLRALVPNI---SKMDKASIIGDAVSYLQELQMQVRKLKAEIASLE 186 (313)
Q Consensus 122 ~~r~~h~~~Er~RR~~in~~~~~LrslvP~~---~k~dkasiL~~Ai~YI~~Lq~~~~~L~~~~~~l~ 186 (313)
.+|..|+.+||+||..||++|..|+++||.. .|++|++||.+||+||++|+.+.+.|..+++.|+
T Consensus 5 ~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~ 72 (88)
T 1nkp_A 5 VKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLR 72 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999974 5999999999999999999999998877766654
No 6
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.59 E-value=1.1e-15 Score=114.41 Aligned_cols=61 Identities=26% Similarity=0.424 Sum_probs=55.1
Q ss_pred ccccccccccHHHHHHHHHHHHHHHHHhccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHH
Q 021355 119 NKKADRSRTLVSERKRRGKMKEKLYGLRALVPNI-SKMDKASIIGDAVSYLQELQMQVRKLK 179 (313)
Q Consensus 119 ~~~~~r~~h~~~Er~RR~~in~~~~~LrslvP~~-~k~dkasiL~~Ai~YI~~Lq~~~~~L~ 179 (313)
+...+|.+|+.+||+||++||++|.+|++|||+. .|+||++||..||+||+.||.++.-|+
T Consensus 4 k~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 4 KDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3467899999999999999999999999999974 699999999999999999998876553
No 7
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.56 E-value=7.8e-15 Score=112.56 Aligned_cols=65 Identities=28% Similarity=0.314 Sum_probs=60.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021355 124 RSRTLVSERKRRGKMKEKLYGLRALVPNI---SKMDKASIIGDAVSYLQELQMQVRKLKAEIASLEYS 188 (313)
Q Consensus 124 r~~h~~~Er~RR~~in~~~~~LrslvP~~---~k~dkasiL~~Ai~YI~~Lq~~~~~L~~~~~~l~~~ 188 (313)
|..|+..||+||..||++|..|+++||.. .|++|++||.+|++||++|+++.++|+.+++.|+..
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e 69 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQRE 69 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999964 688999999999999999999999999998888643
No 8
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.55 E-value=9.1e-16 Score=113.14 Aligned_cols=56 Identities=29% Similarity=0.467 Sum_probs=50.9
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHhccCCCCC------CCChhhHHHHHHHHHHHHHHHHH
Q 021355 121 KADRSRTLVSERKRRGKMKEKLYGLRALVPNIS------KMDKASIIGDAVSYLQELQMQVR 176 (313)
Q Consensus 121 ~~~r~~h~~~Er~RR~~in~~~~~LrslvP~~~------k~dkasiL~~Ai~YI~~Lq~~~~ 176 (313)
..+|..|+.+||+||++||+.|.+|++|||.+. |++|++||.+||+||++||++.+
T Consensus 3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 356889999999999999999999999999864 78999999999999999987653
No 9
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.54 E-value=9e-16 Score=112.62 Aligned_cols=53 Identities=26% Similarity=0.388 Sum_probs=48.7
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhccCCCC-------CCCChhhHHHHHHHHHHHHHHHH
Q 021355 123 DRSRTLVSERKRRGKMKEKLYGLRALVPNI-------SKMDKASIIGDAVSYLQELQMQV 175 (313)
Q Consensus 123 ~r~~h~~~Er~RR~~in~~~~~LrslvP~~-------~k~dkasiL~~Ai~YI~~Lq~~~ 175 (313)
+|.+|+.+||+||++||..|.+|++|||++ .|.+||+||+.||+||++||+++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999964 56789999999999999998765
No 10
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.48 E-value=9.8e-15 Score=110.06 Aligned_cols=55 Identities=31% Similarity=0.408 Sum_probs=50.3
Q ss_pred ccccccccccHHHHHHHHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHH
Q 021355 119 NKKADRSRTLVSERKRRGKMKEKLYGLRALVPNI----SKMDKASIIGDAVSYLQELQM 173 (313)
Q Consensus 119 ~~~~~r~~h~~~Er~RR~~in~~~~~LrslvP~~----~k~dkasiL~~Ai~YI~~Lq~ 173 (313)
+.+.+|.+|+.+||+||++||+.|.+|++|||.+ .|+|||+||..||+||+.|+.
T Consensus 5 k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 5 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 4456789999999999999999999999999975 799999999999999999963
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.43 E-value=5.2e-14 Score=106.89 Aligned_cols=59 Identities=29% Similarity=0.331 Sum_probs=48.3
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHhccCCC---CCCC-ChhhHHHHHHHHHHHHHHHHHHHH
Q 021355 121 KADRSRTLVSERKRRGKMKEKLYGLRALVPN---ISKM-DKASIIGDAVSYLQELQMQVRKLK 179 (313)
Q Consensus 121 ~~~r~~h~~~Er~RR~~in~~~~~LrslvP~---~~k~-dkasiL~~Ai~YI~~Lq~~~~~L~ 179 (313)
..+|..|+..||+||..||+.|.+|+.+||. ..|. +|++||..||+||+.||+++++++
T Consensus 3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578899999999999999999999999995 4565 799999999999999999988764
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.24 E-value=4.5e-12 Score=94.20 Aligned_cols=57 Identities=23% Similarity=0.399 Sum_probs=51.4
Q ss_pred ccccccccccHHHHHHHHHHHHHHHHHhccCCC--CCCCChhhHHHHHHHHHHHHHHHH
Q 021355 119 NKKADRSRTLVSERKRRGKMKEKLYGLRALVPN--ISKMDKASIIGDAVSYLQELQMQV 175 (313)
Q Consensus 119 ~~~~~r~~h~~~Er~RR~~in~~~~~LrslvP~--~~k~dkasiL~~Ai~YI~~Lq~~~ 175 (313)
....+|..|+..||+|+..||+.|..||.+||. ..|++|+.||..||+||.+|++.+
T Consensus 8 ~~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 8 TNADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred CchhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999999999999997 368999999999999999998754
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.22 E-value=1.1e-11 Score=89.88 Aligned_cols=54 Identities=28% Similarity=0.366 Sum_probs=49.1
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHH
Q 021355 123 DRSRTLVSERKRRGKMKEKLYGLRALVPNI---SKMDKASIIGDAVSYLQELQMQVR 176 (313)
Q Consensus 123 ~r~~h~~~Er~RR~~in~~~~~LrslvP~~---~k~dkasiL~~Ai~YI~~Lq~~~~ 176 (313)
+|..|+..||+|+..||+.|..||.+||.. .|++|+.||..||+||..|++.++
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 567899999999999999999999999974 589999999999999999987653
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.98 E-value=3.5e-10 Score=108.07 Aligned_cols=57 Identities=28% Similarity=0.488 Sum_probs=42.6
Q ss_pred cccccccccccHHHHHHHHHHHHHHHHHhccCC-CCCCCChhhHHHHHHHHHHHHHHH
Q 021355 118 RNKKADRSRTLVSERKRRGKMKEKLYGLRALVP-NISKMDKASIIGDAVSYLQELQMQ 174 (313)
Q Consensus 118 ~~~~~~r~~h~~~Er~RR~~in~~~~~LrslvP-~~~k~dkasiL~~Ai~YI~~Lq~~ 174 (313)
.+.+.+|.+|+.+||+||++||..|.+|++||| ...|+||++||..||.||+.|+..
T Consensus 7 ~~~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 7 DKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 345678899999999999999999999999999 567999999999999999999764
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.84 E-value=1.5e-09 Score=104.95 Aligned_cols=57 Identities=30% Similarity=0.367 Sum_probs=50.4
Q ss_pred cccccccccccHHHHHHHHHHHHHHHHHhccCC----CCCCCChhhHHHHHHHHHHHHHHH
Q 021355 118 RNKKADRSRTLVSERKRRGKMKEKLYGLRALVP----NISKMDKASIIGDAVSYLQELQMQ 174 (313)
Q Consensus 118 ~~~~~~r~~h~~~Er~RR~~in~~~~~LrslvP----~~~k~dkasiL~~Ai~YI~~Lq~~ 174 (313)
.+.+.+|.+|+.+||+||++||..|.+|++||| ...|+||++||..||.|||.|+..
T Consensus 8 ~~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 8 GRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred chhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 345677899999999999999999999999999 568999999999999999999753
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.78 E-value=1.3e-08 Score=77.82 Aligned_cols=51 Identities=22% Similarity=0.401 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021355 135 RGKMKEKLYGLRALVPNI----SKMDKASIIGDAVSYLQELQMQVRKLKAEIASL 185 (313)
Q Consensus 135 R~~in~~~~~LrslvP~~----~k~dkasiL~~Ai~YI~~Lq~~~~~L~~~~~~l 185 (313)
|..||++|.+|..|||.+ .|.+|++||..||+||++||++.+++.++...+
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r~ 58 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQ 58 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999974 478999999999999999999999888766544
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.69 E-value=3.4e-09 Score=78.12 Aligned_cols=44 Identities=23% Similarity=0.441 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHH
Q 021355 130 SERKRRGKMKEKLYGLRALVPNI---SKMDKASIIGDAVSYLQELQM 173 (313)
Q Consensus 130 ~Er~RR~~in~~~~~LrslvP~~---~k~dkasiL~~Ai~YI~~Lq~ 173 (313)
.||+|+..||+.|..||.+||.. .|++|..||.-||+||..||.
T Consensus 21 rER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 21 EPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 38999999999999999999974 589999999999999999974
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.05 E-value=7.3e-06 Score=64.43 Aligned_cols=47 Identities=26% Similarity=0.424 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHH
Q 021355 130 SERKRRGKMKEKLYGLRALVPNI---SKMDKASIIGDAVSYLQELQMQVR 176 (313)
Q Consensus 130 ~Er~RR~~in~~~~~LrslvP~~---~k~dkasiL~~Ai~YI~~Lq~~~~ 176 (313)
.||.|=..||+.|..||.+||.. .|++|..+|.-||+||..|++-++
T Consensus 32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~ 81 (97)
T 4aya_A 32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALD 81 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 35778888999999999999963 589999999999999999976553
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=97.47 E-value=0.0012 Score=49.86 Aligned_cols=72 Identities=8% Similarity=0.152 Sum_probs=59.4
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCCc
Q 021355 231 RFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGFD 306 (313)
Q Consensus 231 ~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~~ 306 (313)
.+.|.|.|.++||++.+|..+|-+. |.+|.+.+..+..+.+...+.+++.+ ...+..|...+.+.-...|.+
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~-~~NI~~i~~~~~~~~~~~~i~v~~~~---~~~l~~l~~~L~~~~~~~~~~ 76 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAEL-GLNIDDISQTVLDEYFTMMAVVSSDE---KQDFTYLRNEFEAFGQTLNVK 76 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHT-TCEEEEEEEEEETTEEEEEEEEEESS---CCCHHHHHHHHHHHHHHHTEE
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHc-CCCEEEEEeEEEcCEEEEEEEEEeCC---CCCHHHHHHHHHHHHHHcCCE
Confidence 3678999999999999999999999 89999999988888888888877764 247888888888765554544
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.84 E-value=0.0039 Score=53.78 Aligned_cols=72 Identities=7% Similarity=0.076 Sum_probs=57.9
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCCcc
Q 021355 231 RFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGFDV 307 (313)
Q Consensus 231 ~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~~~ 307 (313)
.+.|.|.|++++|++.+|..+|.+. |++|+.+.+.+..+.+...+.+.... .....|+..+..+..+.|..+
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~-g~NI~d~~~~~~~~~f~~~~~v~~~~----~~~~~l~~~L~~~~~~~~~~~ 77 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQA-GCNIIDSRIAMFGKEFTLLMLISGSP----SNITRVETTLPLLGQQHDLIT 77 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHT-TCEEEEEEEEEETTEEEEEEEEEECH----HHHHHHHHHHHHHHHHHTCEE
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHC-CCCEEeeeeeecCCceEEEEEEecCC----CCHHHHHHHHHHHHHhcCCEE
Confidence 3678999999999999999999999 99999999999889888876665432 256778888887665545443
No 21
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.47 E-value=0.0026 Score=55.42 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=44.3
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEee
Q 021355 231 RFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVK 281 (313)
Q Consensus 231 ~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~ 281 (313)
.+.|.|.|++++|++..|..+|.++ |++|+.+.+.+..+.|...+.+...
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~-g~NI~da~q~~~~~~f~m~~~v~~~ 54 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNI-SANVESSRMACLGGDFAMIVLVSLN 54 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHT-TCEEEEEEEEEETTEEEEEEEEEES
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHC-CCCEEEEEeEEECCeEEEEEEEEec
Confidence 4688999999999999999999999 9999999999999988776666543
No 22
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.36 E-value=0.012 Score=51.14 Aligned_cols=71 Identities=10% Similarity=0.119 Sum_probs=56.3
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC------CeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCC
Q 021355 231 RFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP------ERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQG 304 (313)
Q Consensus 231 ~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~------~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~ 304 (313)
.+.|.|.|++++|++..|..+|-++ |++|..+...+.+ +.|...+.+.+.. ..+ ..|+..+..+....|
T Consensus 93 ~~iltv~g~DrpGiva~Vt~~La~~-g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~---~~~-~~l~~~l~~~a~~l~ 167 (195)
T 2nyi_A 93 EYELYVEGPDSEGIVEAVTAVLAKK-GANIVELETETLPAPFAGFTLFRMGSRVAFPF---PLY-QEVVTALSRVEEEFG 167 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHT-TCEEEEEEEEEEECSSTTCEEEEEEEEEEEEG---GGH-HHHHHHHHHHHHHHT
T ss_pred EEEEEEEeCCCcCHHHHHHHHHHHc-CCCEEEceeeecccccCCCCeEEEEEEEEcCC---Ccc-HHHHHHHHHHHHHcC
Confidence 4789999999999999999999999 9999999998876 5666666665542 345 788888887666655
Q ss_pred Cc
Q 021355 305 FD 306 (313)
Q Consensus 305 ~~ 306 (313)
.+
T Consensus 168 ~d 169 (195)
T 2nyi_A 168 VD 169 (195)
T ss_dssp CE
T ss_pred eE
Confidence 54
No 23
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.00 E-value=0.042 Score=47.21 Aligned_cols=72 Identities=10% Similarity=0.086 Sum_probs=56.8
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC--------CeEEEEEEEEeeCCCccCChHHHHHHHHHHHhc
Q 021355 231 RFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP--------ERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLN 302 (313)
Q Consensus 231 ~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~--------~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~ 302 (313)
.+.|.|.|++++|++.+|.++|.+. |++|..+...+.+ +.|...+.+.+. ...+...|+..+......
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~-~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~---~~~~~~~l~~~l~~~~~~ 168 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQR-QIGMASLSAQTISKDKLHSEQNQFHIAISARVD---SGCNLMQLQEEFDALCTA 168 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHT-TCCEEEEEEEEEC--------CEEEEEEEEEEC---TTSCHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHc-CCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC---CCCCHHHHHHHHHHHHHH
Confidence 4688999999999999999999999 8999998888764 355555555443 356889999999877666
Q ss_pred CCCc
Q 021355 303 QGFD 306 (313)
Q Consensus 303 ~~~~ 306 (313)
.|.+
T Consensus 169 ~~~~ 172 (192)
T 1u8s_A 169 LDVQ 172 (192)
T ss_dssp HTCE
T ss_pred hCce
Confidence 5654
No 24
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=95.75 E-value=0.046 Score=40.25 Aligned_cols=50 Identities=10% Similarity=0.189 Sum_probs=41.5
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEee
Q 021355 231 RFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVK 281 (313)
Q Consensus 231 ~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~ 281 (313)
.+.|+|.+.+++|+|.+|..+|.+. |++|.+.+..+.++.+...+.+++.
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~-~inI~~i~~~~~~~~~~~~i~v~~~ 54 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKF-DTNIRTIVLNAKDGIFTCNLMIFVK 54 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTS-SSCEEEEEEEECSSEEEEEEEEEES
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHC-CCCeEEEEEEEcCCEEEEEEEEEEC
Confidence 3678899999999999999999999 8999999988766655555666554
No 25
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=94.06 E-value=0.33 Score=44.87 Aligned_cols=71 Identities=10% Similarity=0.075 Sum_probs=54.9
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEee--ecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCC
Q 021355 231 RFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFA--TEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGF 305 (313)
Q Consensus 231 ~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~is--t~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~ 305 (313)
.+.|.|.|++++|+...|...|-+. |++++.++-. ...+.|+..+.+... ..++.+.|+..+...-..-|.
T Consensus 8 ~~vLtv~c~DrpGIVa~Vs~~La~~-g~NI~d~~q~~d~~~g~Ffmr~~~~~~---~~~~~~~L~~~f~~la~~l~m 80 (286)
T 3n0v_A 8 TWILTADCPSMLGTVDVVTRYLFEQ-RCYVTEHHSFDDRQSGRFFIRVEFRQP---DDFDEAGFRAGLAERSEAFGM 80 (286)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHT-TCEEEEEEEEEETTTTEEEEEEEEECC---SSCCHHHHHHHHHHHHGGGTC
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHC-CCCeeeeeeeccCCCCeeEEEEEEecC---CCCCHHHHHHHHHHHHHHcCC
Confidence 3789999999999999999999999 8999998877 345677655544432 257899999998765444443
No 26
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=93.99 E-value=0.23 Score=46.34 Aligned_cols=72 Identities=13% Similarity=0.135 Sum_probs=54.5
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeec--CCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCC
Q 021355 230 RRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATE--PERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQG 304 (313)
Q Consensus 230 ~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~--~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~ 304 (313)
..+.|.|.|++++|+...|...|-+. |.+++.++-... .+.|+..+.+.+. ...++.+.|+..+...-..-|
T Consensus 21 ~~~iLtv~c~DrpGIVa~VS~~La~~-g~NI~d~~q~~d~~~g~FfMr~~~~~~--~~~~~~~~L~~~l~~la~~l~ 94 (302)
T 3o1l_A 21 RTFRLVIACPDRVGIVAKVSNFLASH-NGWITEASHHSDNLSGWFFMRHEIRAD--TLPFDLDGFREAFTPIAEEFS 94 (302)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHT-TCCEEEEEEEEETTTTEEEEEEEEEGG--GSSSCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHC-CCCEEEeeEEecCCCCeEEEEEEEecC--CCCCCHHHHHHHHHHHHHHhC
Confidence 44789999999999999999999999 999999887754 5676655444332 234788999988875544333
No 27
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=93.99 E-value=0.3 Score=45.15 Aligned_cols=74 Identities=14% Similarity=0.133 Sum_probs=56.5
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEee--ecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCCc
Q 021355 230 RRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFA--TEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGFD 306 (313)
Q Consensus 230 ~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~is--t~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~~ 306 (313)
..+.|.|.|++++|+...|...|-+. |++++.++-. ...+.|+..+.+.+.+ ..++.+.|+..+...-..-|.+
T Consensus 5 ~~~iLtv~g~DrpGIVa~Vs~~La~~-g~NI~d~~q~~d~~~g~Ffmr~~~~~~~--~~~~~~~L~~~f~~la~~~~m~ 80 (288)
T 3obi_A 5 HQYVLTLSCPDRAGIVSAVSTFLFEN-GQNILDAQQYNDTESGHFFMRVVFNAAA--KVIPLASLRTGFGVIAAKFTMG 80 (288)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHT-TEEEEEEEEEEETTTTEEEEEEEEEESS--CCCCHHHHHHHHHHHHHHTTCE
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHC-CCcEEeeeeeecCCCCceEEEEEEEcCC--CCCCHHHHHHHHHHHHHHcCCE
Confidence 34789999999999999999999999 9999998874 3457776666655543 2478899999987654444433
No 28
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=93.68 E-value=0.2 Score=47.69 Aligned_cols=73 Identities=21% Similarity=0.263 Sum_probs=57.7
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCCc
Q 021355 231 RFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGFD 306 (313)
Q Consensus 231 ~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~~ 306 (313)
.+.|.|.|++|+|+...|...|-+. |.+|+.++-...++.|...+.+.+... .++.+.|+..+...-..-|.+
T Consensus 12 ~~~lt~~g~Dr~Giv~~vs~~l~~~-~~nI~d~~q~~~~~~f~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~ 84 (415)
T 3p96_A 12 SVLITVTGVDQPGVTATLFEVLSRH-GVELLNVEQVVIRHRLTLGVLVCCPAD--VADGPALRHDVEAAIRKVGLD 84 (415)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTT-TCEEEEEEEEEETTEEEEEEEEEECHH--HHTSHHHHHHHHHHHHHTTCE
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHC-CCCEEEeeeEEECCEeEEEEEEEecCC--cCCHHHHHHHHHHHHHHcCeE
Confidence 4789999999999999999999999 999999999989998877776665432 235678888887654444443
No 29
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=93.41 E-value=0.45 Score=44.11 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=53.4
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEee--ecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCC
Q 021355 230 RRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFA--TEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQG 304 (313)
Q Consensus 230 ~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~is--t~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~ 304 (313)
..+.|.|.|++++|+...|...|-+. |.+++.++-. ...+.|+..+.+.....+..++.+.|+..+...-..-|
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~-g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~la~~~~ 84 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRH-RCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEPIAERFR 84 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHT-TEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHHHHHHHT
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHC-CCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHHHHHhcC
Confidence 34789999999999999999999999 8999998877 34577765544443311224788899988876544333
No 30
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=90.61 E-value=1.2 Score=41.10 Aligned_cols=70 Identities=6% Similarity=0.124 Sum_probs=49.4
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHccCCceEEEEEee--ecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCC
Q 021355 230 RRFYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFA--TEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQG 304 (313)
Q Consensus 230 ~~~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~is--t~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~ 304 (313)
..+.|.|.|++++|+...|...|-+. |.+++.++-. ...+.|+..+.+... ..+...|+..+...-..-|
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~-g~NI~d~~q~~d~~~g~Ffmr~~~~~~----~~~~~~L~~~f~~la~~~~ 77 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNN-GANIVEAEQFNDEDSSKFFMRVSVEIP----VAGVNDFNSAFGKVVEKYN 77 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHT-TCEEEEEEEEEETTTTEEEEEEEEECC----C---CHHHHHHHHHHGGGT
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHC-CCCEEeeeeeecCCCCeEEEEEEEEcC----CCCHHHHHHHHHHHHHHcC
Confidence 34789999999999999999999999 8999998875 345667654444332 1345578877765444333
No 31
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=88.88 E-value=0.82 Score=39.94 Aligned_cols=47 Identities=9% Similarity=0.171 Sum_probs=37.4
Q ss_pred EEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC--CeEEEEEEEE
Q 021355 232 FYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP--ERLVLTFNLN 279 (313)
Q Consensus 232 ~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~--~~~~~t~~~k 279 (313)
..|.|....+||.|.+|..+|... |+++.+.++.... +....+|++.
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrR-G~NI~SLtV~~ted~gisRitIvV~ 78 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARR-GFNISSITVGESETPGLSRLVIMVK 78 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTT-TCEEEEEEEEECSSTTEEEEEEEEE
T ss_pred EEEEEEECCCChHHHHHHHHHHHC-CceEEEEEeeccCCCCEEEEEEEEE
Confidence 467888899999999999999999 9999998886443 4455555554
No 32
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=88.36 E-value=1.8 Score=36.60 Aligned_cols=47 Identities=9% Similarity=0.140 Sum_probs=37.7
Q ss_pred EEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC--CeEEEEEEEE
Q 021355 232 FYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP--ERLVLTFNLN 279 (313)
Q Consensus 232 ~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~--~~~~~t~~~k 279 (313)
..|.|....++|+|.+|..+|... |+++.+.++.... +....+|++.
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~r-g~NI~Sl~v~~t~d~~~sriti~V~ 52 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQR-GYNIESLTVAPTDDPTLSRMTIQTV 52 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTT-TCCCSEEEEEECSCSSEEEEEEEEE
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHC-CCCeeeceeeecCCCCEEEEEEEEe
Confidence 467888999999999999999999 8999998887554 4445555544
No 33
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=87.84 E-value=1.3 Score=35.71 Aligned_cols=63 Identities=6% Similarity=0.015 Sum_probs=43.4
Q ss_pred EEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCCcccC
Q 021355 234 LRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGFDVVT 309 (313)
Q Consensus 234 I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~~~~~ 309 (313)
|.+..+.+||.+.+++++|.+. |++|...-....+.+....| ++++ .....++|.+.||.+..
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~-~InI~~~~~~~~~~~~~~~i--~~~d----------~~~A~~~L~~~g~~v~~ 137 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAE-GVFIEYMYSFANNNVANVVI--RPSN----------MDKCIEVLKEKKVDLLA 137 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHT-TCCEEEEEEEEETTEEEEEE--EESC----------HHHHHHHHHHTTCEEEC
T ss_pred EEEEeCCCCcHHHHHHHHHHHC-CCCEEEEEEEccCCcEEEEE--EeCC----------HHHHHHHHHHcCCEEec
Confidence 4555679999999999999999 89996544332344444333 4432 25566789999998753
No 34
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=86.58 E-value=1.9 Score=36.55 Aligned_cols=47 Identities=11% Similarity=0.200 Sum_probs=38.2
Q ss_pred EEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC--CeEEEEEEEE
Q 021355 232 FYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP--ERLVLTFNLN 279 (313)
Q Consensus 232 ~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~--~~~~~t~~~k 279 (313)
..|.|....++|+|.+|..+|... |+++.+.++.... +....+|++.
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~r-g~NI~Sl~v~~t~d~g~sritivV~ 53 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSAR-GYNIESLSVAPTEDPTLSRMTLVTN 53 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHH-TCCCCEEEEEECSSTTEEEEEEEEE
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHC-CCcEEEEEEEecCCCCEEEEEEEEe
Confidence 467888999999999999999999 8999998887544 4555555554
No 35
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=85.99 E-value=1.6 Score=35.64 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=32.3
Q ss_pred EEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeec
Q 021355 233 YLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATE 268 (313)
Q Consensus 233 ~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~ 268 (313)
.|+|.|.+|+|+|.+|+++|-+. ++++..+++.+.
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~-~~ni~~~~~~~~ 36 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLR-GIDLRGIEIDPI 36 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHT-TCCEEEEEEETT
T ss_pred EEEEEEecCCcHHHHHHHHHHHc-CCCeEEEEEecC
Confidence 47899999999999999999999 899999999766
No 36
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=85.16 E-value=2.6 Score=37.57 Aligned_cols=59 Identities=10% Similarity=0.059 Sum_probs=41.7
Q ss_pred EEEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecC-----CeEEEEEEEEeeCCCccCChHHHHHHHH
Q 021355 232 FYLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEP-----ERLVLTFNLNVKDCEQNMNLPNLRLWVT 297 (313)
Q Consensus 232 ~~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~-----~~~~~t~~~kv~~~~~~i~~~~Lk~~v~ 297 (313)
+.|.|.+.+|+|+|.+|+.+|-+. +.++.+.+..+.. +.. .+++++.+. +++.|-.+|+
T Consensus 5 VtL~I~a~DRpGLLsDIt~vLAe~-kiNIltIn~~~~~kG~~ng~A--~I~IEV~d~----~Le~LL~kLr 68 (223)
T 1y7p_A 5 RGLRIIAENKIGVLRDLTTIIAEE-GGNITFAQTFLIKHGEHEGKA--LIYFEIEGG----DFEKILERVK 68 (223)
T ss_dssp EEEEEEEECCTTHHHHHHHHCC-----CEEEEEEEECCSSTTTTEE--EEEEEECSS----CHHHHHHHHH
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHc-CCCceEEEEEccccCCcCCEE--EEEEEECCC----CHHHHHHHHh
Confidence 678899999999999999999999 7999999998764 233 333777642 6666665554
No 37
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=81.99 E-value=4.3 Score=28.70 Aligned_cols=46 Identities=17% Similarity=0.291 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021355 131 ERKRRGKMKEKLYGLRALVPNISKMDKASIIGDAVSYLQELQMQVRKLKAEIASLEYSM 189 (313)
Q Consensus 131 Er~RR~~in~~~~~LrslvP~~~k~dkasiL~~Ai~YI~~Lq~~~~~L~~~~~~l~~~~ 189 (313)
||++|.+...+..+.++= ..-..|+..|+.+++.|+.++..|...+
T Consensus 1 Ekr~rrrerNR~AA~rcR-------------~rKk~~~~~Le~~v~~L~~~n~~L~~ei 46 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCR-------------NRRRELTDTLQAETDQLEDEKSALQTEI 46 (63)
T ss_dssp CHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777762 2344677777777777777777765543
No 38
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=78.21 E-value=11 Score=30.06 Aligned_cols=34 Identities=12% Similarity=0.177 Sum_probs=28.5
Q ss_pred EEEEEecCCCCHHHHHHHHHHccCCceEEEEEeee
Q 021355 233 YLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFAT 267 (313)
Q Consensus 233 ~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist 267 (313)
.|.|..+.+||.+.+|..+|.+. |++|.......
T Consensus 8 ~i~v~v~d~~G~l~~i~~~la~~-~inI~~i~~~~ 41 (144)
T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKE-NINLSALCIAE 41 (144)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHT-TCCEEEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHHHHC-CCCEEEEEEEe
Confidence 45667789999999999999999 89998776553
No 39
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=62.35 E-value=7.9 Score=27.04 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 021355 166 SYLQELQMQVRKLKAEIASLEYSM 189 (313)
Q Consensus 166 ~YI~~Lq~~~~~L~~~~~~l~~~~ 189 (313)
.||..|+.+++.|+..++.|++.+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999988754
No 40
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=61.23 E-value=9 Score=25.08 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 021355 166 SYLQELQMQVRKLKAEIASLEYSM 189 (313)
Q Consensus 166 ~YI~~Lq~~~~~L~~~~~~l~~~~ 189 (313)
-|+..|+.+++.|+....+|+..+
T Consensus 3 aYl~eLE~r~k~le~~naeLEerv 26 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERL 26 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 488888888888888888887554
No 41
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=57.42 E-value=18 Score=23.00 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=26.3
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021355 155 MDKASIIGDAVSYLQELQMQVRKLKAEIASL 185 (313)
Q Consensus 155 ~dkasiL~~Ai~YI~~Lq~~~~~L~~~~~~l 185 (313)
|..+..|+++-+-|..|+.+++.|++++-+|
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999988665
No 42
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=56.67 E-value=12 Score=25.73 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 021355 166 SYLQELQMQVRKLKAEIASLEYSM 189 (313)
Q Consensus 166 ~YI~~Lq~~~~~L~~~~~~l~~~~ 189 (313)
.||..|+.++..|+.++..|....
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~ 45 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEEL 45 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888888876554
No 43
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=53.15 E-value=13 Score=21.39 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 021355 167 YLQELQMQVRKLKAEIASLEYS 188 (313)
Q Consensus 167 YI~~Lq~~~~~L~~~~~~l~~~ 188 (313)
|+-+|+.++.+|+-++..|+..
T Consensus 1 yvyqlkdevgelkgevralkde 22 (27)
T 3v86_A 1 YVYQLKDEVGELKGEVRALKDE 22 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHhHHHHHHHH
Confidence 5667777777777777666544
No 44
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=52.88 E-value=20 Score=26.84 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021355 161 IGDAVSYLQELQMQVRKLKAEIASLE 186 (313)
Q Consensus 161 L~~Ai~YI~~Lq~~~~~L~~~~~~l~ 186 (313)
++.||+-|.-||.++++|++++..|.
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~ 40 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLS 40 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999887764
No 45
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=50.39 E-value=13 Score=21.63 Aligned_cols=22 Identities=41% Similarity=0.709 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 021355 168 LQELQMQVRKLKAEIASLEYSM 189 (313)
Q Consensus 168 I~~Lq~~~~~L~~~~~~l~~~~ 189 (313)
|+.|+++..+|+++...|+..+
T Consensus 2 irrlkqknarlkqeiaaleyei 23 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEI 23 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHH
Confidence 5678888888888888887553
No 46
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=49.92 E-value=69 Score=29.13 Aligned_cols=62 Identities=8% Similarity=0.049 Sum_probs=44.8
Q ss_pred EEEEEecCCCCHHHHHHHHHHccCCceEEEEEeeecCC-eEEEEEEEEeeCCCccCChHHHHHHHHH
Q 021355 233 YLRLVSSRGQGVAVSLYKALESLTSFDVQNFNFATEPE-RLVLTFNLNVKDCEQNMNLPNLRLWVTG 298 (313)
Q Consensus 233 ~I~I~c~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~-~~~~t~~~kv~~~~~~i~~~~Lk~~v~~ 298 (313)
.|-+..+.+||.|.++|..|... |+++.....=...+ ..-|.|.+.+++. ++-+.++.+|..
T Consensus 202 sl~f~~~~~pGaL~~~L~~Fa~~-gINLtkIESRP~~~~~~~Y~FfvD~eg~---~~d~~v~~aL~~ 264 (283)
T 2qmx_A 202 SIVFALPNEQGSLFRALATFALR-GIDLTKIESRPSRKKAFEYLFYADFIGH---REDQNVHNALEN 264 (283)
T ss_dssp EEEEEEECCTTHHHHHHHHHHTT-TCCEEEEEEEECSSSTTEEEEEEEEESC---TTSHHHHHHHHH
T ss_pred EEEEEcCCCCchHHHHHHHHHHc-CCCeeEEEeeEcCCCCcceEEEEEEecC---CCcHHHHHHHHH
Confidence 33344468899999999999999 89998887765553 4578888888754 333566666554
No 47
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=49.53 E-value=25 Score=21.21 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 021355 166 SYLQELQMQVRKLKAEIASLEYSM 189 (313)
Q Consensus 166 ~YI~~Lq~~~~~L~~~~~~l~~~~ 189 (313)
+-++.|+.-+++|++++..|+..+
T Consensus 6 e~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 6 EDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777877777776543
No 48
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=47.10 E-value=9.9 Score=26.77 Aligned_cols=22 Identities=9% Similarity=0.249 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 021355 166 SYLQELQMQVRKLKAEIASLEY 187 (313)
Q Consensus 166 ~YI~~Lq~~~~~L~~~~~~l~~ 187 (313)
.||..|+++++.|+..++.|.+
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~~ 70 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLTS 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999988876643
No 49
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=45.58 E-value=22 Score=25.07 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 021355 166 SYLQELQMQVRKLKAEIASLEYS 188 (313)
Q Consensus 166 ~YI~~Lq~~~~~L~~~~~~l~~~ 188 (313)
.|+..|+.++..|+.++..|...
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~e 52 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777776666544
No 50
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=45.36 E-value=49 Score=25.43 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021355 157 KASIIGDAVSYLQELQMQVRKLKAEIASLEYS 188 (313)
Q Consensus 157 kasiL~~Ai~YI~~Lq~~~~~L~~~~~~l~~~ 188 (313)
-..-|.++..-|..|+..+.+++.-+.+++..
T Consensus 60 ~~~~L~e~~~kid~L~~el~K~q~~L~e~e~~ 91 (98)
T 2ke4_A 60 LEPQIAETLSNIERLKLEVQKYEAWLAEAESR 91 (98)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35568899999999999999999988888654
No 51
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=45.22 E-value=39 Score=21.69 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021355 161 IGDAVSYLQELQMQVRKLKAEIASLE 186 (313)
Q Consensus 161 L~~Ai~YI~~Lq~~~~~L~~~~~~l~ 186 (313)
+.+--+||++|+.+..+|+.-++.|+
T Consensus 5 vkelknyiqeleernaelknlkehlk 30 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 45566899999988888877666554
No 52
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=44.84 E-value=28 Score=20.38 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=15.2
Q ss_pred CChhhHHHHHHHHHHHHHH
Q 021355 155 MDKASIIGDAVSYLQELQM 173 (313)
Q Consensus 155 ~dkasiL~~Ai~YI~~Lq~ 173 (313)
+....+|-+|.+|+...++
T Consensus 2 ~~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRER 20 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 4567889999999987655
No 53
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=44.31 E-value=88 Score=25.45 Aligned_cols=52 Identities=17% Similarity=0.341 Sum_probs=34.0
Q ss_pred eeCceEEEEEEe-cCCCCHHHHHHHHHHccCCceEEEEEeeec---CCeEEEEEEEE
Q 021355 227 VEERRFYLRLVS-SRGQGVAVSLYKALESLTSFDVQNFNFATE---PERLVLTFNLN 279 (313)
Q Consensus 227 v~~~~~~I~I~c-~~r~glL~~Il~aLe~l~gl~V~~a~ist~---~~~~~~t~~~k 279 (313)
...+.+.|.|.. +.++|.+.+|+.+|.+. |++|.-...+.. .+..-.+|++.
T Consensus 12 ~~~~~a~Itv~g~~~~~G~~a~if~~La~~-~InVd~I~q~~~~~~~g~~~isf~V~ 67 (167)
T 2dt9_A 12 LDLDHAQIGLIGIPDQPGIAAKVFQALAER-GIAVDMIIQGVPGHDPSRQQMAFTVK 67 (167)
T ss_dssp EECSEEEEEEEEEECSTTHHHHHHHHHHHH-TCCCSCEEBCCCCSCTTEEEEEEEEE
T ss_pred EeCCEEEEEEecCCCCCCHHHHHHHHHHHc-CCcEEEEEcCCCCCCCCceEEEEEEe
Confidence 345556777664 56799999999999999 788755433221 23444555553
No 54
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=41.78 E-value=28 Score=24.25 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 021355 166 SYLQELQMQVRKLKAEIASLEYS 188 (313)
Q Consensus 166 ~YI~~Lq~~~~~L~~~~~~l~~~ 188 (313)
+|+..|+.++..|+.++..|...
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~ 44 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELAST 44 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666665543
No 55
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=41.32 E-value=97 Score=28.61 Aligned_cols=63 Identities=6% Similarity=0.048 Sum_probs=44.3
Q ss_pred EEEEEEec-CCCCHHHHHHHHHHccCCceEEEEEeeecCC-eEEEEEEEEeeCCCccCChHHHHHHHHH
Q 021355 232 FYLRLVSS-RGQGVAVSLYKALESLTSFDVQNFNFATEPE-RLVLTFNLNVKDCEQNMNLPNLRLWVTG 298 (313)
Q Consensus 232 ~~I~I~c~-~r~glL~~Il~aLe~l~gl~V~~a~ist~~~-~~~~t~~~kv~~~~~~i~~~~Lk~~v~~ 298 (313)
.-|-+..+ ++||.|.++|..|... |+++.....-...+ ..-|.|.+.+.+. ++-+.++.+|..
T Consensus 202 TSl~f~~~~~~pGaL~~~L~~Fa~~-gINLtkIESRP~~~~~~~Y~FfiD~eg~---~~d~~v~~aL~~ 266 (313)
T 3mwb_A 202 TTVVVPLPEDHPGALMEILDQFASR-GVNLSRIESRPTGQYLGHYFFSIDADGH---ATDSRVADALAG 266 (313)
T ss_dssp EEEEEECSSCCTTHHHHHHHHHHTT-TCCEEEEEEEECSSSTTSEEEEEEEESC---TTSHHHHHHHHH
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHC-CccEEEEEEeecCCCCccEEEEEEEeCC---CCcHHHHHHHHH
Confidence 34445554 7899999999999999 89998877655443 3467788887754 334556666554
No 56
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=40.33 E-value=1.1e+02 Score=28.35 Aligned_cols=72 Identities=10% Similarity=0.074 Sum_probs=54.3
Q ss_pred EEEEEEecC-CCCHHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcCCCccc
Q 021355 232 FYLRLVSSR-GQGVAVSLYKALESLTSFDVQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQGFDVV 308 (313)
Q Consensus 232 ~~I~I~c~~-r~glL~~Il~aLe~l~gl~V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~~~~~~ 308 (313)
..+.+.... +++++.+|...|.+. |+++......+....+.+.|++.+.. .+...++..+...+...+.+++
T Consensus 102 ~~~~llg~~~~~~~~~~i~~~l~~~-~~Ni~~l~~~~~~~~~~~~~~v~~~~----~~~~~l~~~l~~l~~~~~vD~~ 174 (415)
T 3p96_A 102 HTIFVLGRPITAAAFGAVAREVAAL-GVNIDLIRGVSDYPVIGLELRVSVPP----GADEALRTALNRVSSEEHVDVA 174 (415)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHT-TCEEEEEEEEESSSSEEEEEEEECCT----TCHHHHHHHHHHHHHHHTCEEE
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHHc-CCCccceeeccCCCceEEEEEeeCCC----CCHHHHHHHHHHHhhhcCcCcc
Confidence 556666677 799999999999998 89988777666445555666665442 4678899999888877777764
No 57
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=39.87 E-value=1.4e+02 Score=24.55 Aligned_cols=37 Identities=14% Similarity=0.259 Sum_probs=28.0
Q ss_pred eeCceEEEEEE-ecCCCCHHHHHHHHHHccCCceEEEEE
Q 021355 227 VEERRFYLRLV-SSRGQGVAVSLYKALESLTSFDVQNFN 264 (313)
Q Consensus 227 v~~~~~~I~I~-c~~r~glL~~Il~aLe~l~gl~V~~a~ 264 (313)
...+.+.|.|. -+.++|.+.+|++.|.+. |++|.-..
T Consensus 11 ~~~~~~~Itv~~~~~~~G~~a~if~~La~~-~InId~i~ 48 (178)
T 2dtj_A 11 TDKSEAKVTVLGISDKPGEAAKVFRALADA-EINIDMVL 48 (178)
T ss_dssp EECSEEEEEEEEEECSTTHHHHHHHHHHHT-TCCCCEEE
T ss_pred ecCCEEEEEEecCCCCccHHHHHHHHHHHc-CCCEEEEE
Confidence 44566777774 477899999999999999 86665443
No 58
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=38.81 E-value=33 Score=23.72 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 021355 166 SYLQELQMQVRKLKAEIASLEYS 188 (313)
Q Consensus 166 ~YI~~Lq~~~~~L~~~~~~l~~~ 188 (313)
.|+..|+.+++.|+.++..|...
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~ 44 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSE 44 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666665555443
No 59
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=38.08 E-value=1.3e+02 Score=22.66 Aligned_cols=68 Identities=13% Similarity=0.153 Sum_probs=44.8
Q ss_pred eEEEEEEecCC--CCHHHHHHHHHHccCCceEEEEEeeecC-CeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcC
Q 021355 231 RFYLRLVSSRG--QGVAVSLYKALESLTSFDVQNFNFATEP-ERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQ 303 (313)
Q Consensus 231 ~~~I~I~c~~r--~glL~~Il~aLe~l~gl~V~~a~ist~~-~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~ 303 (313)
.+.|.|.|... .-+...|+++|+.. ++.+....+...+ +.+..+.++-.. ..+-..|.+.+.+.-+.-
T Consensus 8 ~Y~v~Vic~~~~e~~vR~lL~~~L~~~-~~~l~~l~s~~~~~~~veI~A~L~at----~~~~~~Le~iv~rLs~ep 78 (94)
T 2lqj_A 8 PYQVRVICRPKAETYVRAHIVQRTSSN-DITLRGIRTGPAGDDNITLTAHLLMV----GHTPAKLERLVAELSLQP 78 (94)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHH-TEEEEEEEEEECSSSCEEEEEEEEEE----SCCHHHHHHHHHHHHHST
T ss_pred EEEEEEEECcHHHHHHHHHHHHHHhcC-CCceeEeeeecCCCCeEEEEEEEEec----CCCHHHHHHHHHHHhCCC
Confidence 37899999876 56788899999998 7999888855533 435444444332 234556666666555443
No 60
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=36.73 E-value=36 Score=24.65 Aligned_cols=12 Identities=42% Similarity=0.462 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 021355 167 YLQELQMQVRKL 178 (313)
Q Consensus 167 YI~~Lq~~~~~L 178 (313)
||+.|+.++..|
T Consensus 30 ~i~~LE~~v~~l 41 (70)
T 1gd2_E 30 HLKALETQVVTL 41 (70)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 61
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=36.52 E-value=1.1e+02 Score=27.63 Aligned_cols=61 Identities=7% Similarity=0.069 Sum_probs=43.1
Q ss_pred EEEEEe---cCCCCHHHHHHHHHHccCCceEEEEEeeecCC-eEEEEEEEEeeCCCccCChHHHHHHHHH
Q 021355 233 YLRLVS---SRGQGVAVSLYKALESLTSFDVQNFNFATEPE-RLVLTFNLNVKDCEQNMNLPNLRLWVTG 298 (313)
Q Consensus 233 ~I~I~c---~~r~glL~~Il~aLe~l~gl~V~~a~ist~~~-~~~~t~~~kv~~~~~~i~~~~Lk~~v~~ 298 (313)
-|-+.. ..++|.|.++|..|... |+++.....-...+ ..-|.|.+.+. . ++-+.++.+|..
T Consensus 188 sl~f~~~~~~~~pGaL~~~L~~Fa~~-gINLtkIESRP~~~~~~~Y~FfiD~e-~---~~d~~v~~aL~~ 252 (267)
T 2qmw_A 188 SLMFLITPMHDKPGLLASVLNTFALF-NINLSWIESRPLKTQLGMYRFFVQAD-S---AITTDIKKVIAI 252 (267)
T ss_dssp EEEEEEEESSCCTTHHHHHHHHHHTT-TCCEEEEEEEECSSSTTCEEEEEEES-C---CSCHHHHHHHHH
T ss_pred EEEEEcCCCCCCcChHHHHHHHHHHc-CCCeeEEEEeecCCCCccEEEEEEEe-c---CCcHHHHHHHHH
Confidence 444455 68899999999999999 89998877755553 34677777776 4 233556555544
No 62
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=36.28 E-value=42 Score=21.15 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 021355 168 LQELQMQVRKLKAEIASLEY 187 (313)
Q Consensus 168 I~~Lq~~~~~L~~~~~~l~~ 187 (313)
+.+|+.++++|..++..|+.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~ 22 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKN 22 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHH
Confidence 45566666666655555543
No 63
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=33.82 E-value=1e+02 Score=25.07 Aligned_cols=51 Identities=12% Similarity=0.181 Sum_probs=33.6
Q ss_pred eeCceEEEEEE-ecCCCCHHHHHHHHHHccCCceEEEEEeeec-CCeEEEEEEE
Q 021355 227 VEERRFYLRLV-SSRGQGVAVSLYKALESLTSFDVQNFNFATE-PERLVLTFNL 278 (313)
Q Consensus 227 v~~~~~~I~I~-c~~r~glL~~Il~aLe~l~gl~V~~a~ist~-~~~~~~t~~~ 278 (313)
...+...|.|. -+.++|.+.+|+++|.+. |+.|.....+.. ++....+|++
T Consensus 21 ~~~~~~~i~v~~~~~~~G~~~~if~~La~~-~Invd~i~~s~~~~g~~~isf~v 73 (167)
T 2re1_A 21 FDKNQARINVRGVPDKPGVAYQILGAVADA-NIEVDMIIQNVGSEGTTDFSFTV 73 (167)
T ss_dssp EECCCEEEEEEEEECCTTHHHHHHHHHHTT-TCCCCCEEEC----CEEEEEEEE
T ss_pred ecCCEEEEEEecCCCCcCHHHHHHHHHHHc-CCeEEEEEcCCCCCCeeEEEEEE
Confidence 34555777877 478899999999999999 788865443211 2334444544
No 64
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=32.88 E-value=54 Score=18.67 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 021355 158 ASIIGDAVSYLQELQMQVRK 177 (313)
Q Consensus 158 asiL~~Ai~YI~~Lq~~~~~ 177 (313)
.+-|-+|-.|+.+|+.+++.
T Consensus 3 vsgliearkyleqlhrklkn 22 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 35577889999998877653
No 65
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=32.54 E-value=2.4e+02 Score=26.05 Aligned_cols=56 Identities=13% Similarity=0.135 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHccCCceEEEEEeeecCC-eEEEEEEEEeeCCCccCChHHHHHHHHHH
Q 021355 240 RGQGVAVSLYKALESLTSFDVQNFNFATEPE-RLVLTFNLNVKDCEQNMNLPNLRLWVTGA 299 (313)
Q Consensus 240 ~r~glL~~Il~aLe~l~gl~V~~a~ist~~~-~~~~t~~~kv~~~~~~i~~~~Lk~~v~~a 299 (313)
.+||.|.++|..|... |++.....+-...+ ..-|.|.+.+++. ++-..++.+|...
T Consensus 217 ~~pGaL~~~L~~Fa~~-gINLtkIESRP~~~~~~~Y~FfiD~eg~---~~d~~v~~AL~~L 273 (329)
T 3luy_A 217 TGPGVLANLLDVFRDA-GLNMTSFISRPIKGRTGTYSFIVTLDAA---PWEERFRDALVEI 273 (329)
T ss_dssp CSTTHHHHHHHHHHHT-TCCEEEEEEEEETTEEEEEEEEEEESSC---TTSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHC-CcceEEEEeeECCCCCccEEEEEEEeCC---cCCHHHHHHHHHH
Confidence 5799999999999999 89998888766554 4578888888754 3335666666543
No 66
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=31.68 E-value=1.4e+02 Score=24.14 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=27.3
Q ss_pred CceEEEEEEecC---CCCHHHHHHHHHHccCCceEEEEE
Q 021355 229 ERRFYLRLVSSR---GQGVAVSLYKALESLTSFDVQNFN 264 (313)
Q Consensus 229 ~~~~~I~I~c~~---r~glL~~Il~aLe~l~gl~V~~a~ 264 (313)
.+-..|.|.... .+|++.+++++|.+. |++|...+
T Consensus 101 ~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~-~InI~~is 138 (167)
T 2re1_A 101 DTVCKVSAVGLGMRSHVGVAAKIFRTLAEE-GINIQMIS 138 (167)
T ss_dssp SSEEEEEEECSSCTTCCCHHHHHHHHHHHT-TCCCCEEE
T ss_pred CCEEEEEEECCCcCCCcCHHHHHHHHHHHC-CCcEEEEE
Confidence 444566666544 799999999999999 89997754
No 67
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=31.62 E-value=57 Score=20.14 Aligned_cols=21 Identities=5% Similarity=0.230 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 021355 168 LQELQMQVRKLKAEIASLEYS 188 (313)
Q Consensus 168 I~~Lq~~~~~L~~~~~~l~~~ 188 (313)
+.+|+.++++|-.++..|+..
T Consensus 2 MnQLEdKvEeLl~~~~~Le~E 22 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENX 22 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHH
Confidence 345666666666555555543
No 68
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=31.55 E-value=35 Score=21.13 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 021355 169 QELQMQVRKLKAEIASLEYS 188 (313)
Q Consensus 169 ~~Lq~~~~~L~~~~~~l~~~ 188 (313)
.+|+.++++|-.++..|+..
T Consensus 3 ~QLE~kVEeLl~~n~~Le~E 22 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENE 22 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHH
Confidence 35566666665555555543
No 69
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=31.01 E-value=57 Score=26.73 Aligned_cols=34 Identities=15% Similarity=0.351 Sum_probs=28.9
Q ss_pred HHHHHHHHhccCCC----CCCCChhhHHHHHHHHHHHH
Q 021355 138 MKEKLYGLRALVPN----ISKMDKASIIGDAVSYLQEL 171 (313)
Q Consensus 138 in~~~~~LrslvP~----~~k~dkasiL~~Ai~YI~~L 171 (313)
|.-.|..|+.++|. ..+.-|-.||..|.+++..|
T Consensus 96 Id~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 96 IDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp HHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred cccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 66789999999996 35778999999999998766
No 70
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=30.33 E-value=62 Score=19.98 Aligned_cols=21 Identities=10% Similarity=0.186 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 021355 168 LQELQMQVRKLKAEIASLEYS 188 (313)
Q Consensus 168 I~~Lq~~~~~L~~~~~~l~~~ 188 (313)
+.+|+.++++|-.++..|+..
T Consensus 2 MnQLEdKVEell~~~~~le~E 22 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNE 22 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHH
Confidence 355666666666655555443
No 71
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=29.96 E-value=1.1e+02 Score=23.40 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021355 161 IGDAVSYLQELQMQVRKLKAEI 182 (313)
Q Consensus 161 L~~Ai~YI~~Lq~~~~~L~~~~ 182 (313)
...|=+||..|+.+++-|++..
T Consensus 65 ~e~a~e~vp~L~~~i~vle~~~ 86 (94)
T 3fx7_A 65 DEAAQEQIAWLKERIRVLEEDY 86 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHhHHHHHHHHHhHHHH
Confidence 4577789999999999988764
No 72
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=29.85 E-value=54 Score=22.49 Aligned_cols=28 Identities=11% Similarity=0.177 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021355 160 IIGDAVSYLQELQMQVRKLKAEIASLEY 187 (313)
Q Consensus 160 iL~~Ai~YI~~Lq~~~~~L~~~~~~l~~ 187 (313)
.|+..++-+..|..+++.|+++++.|+.
T Consensus 28 FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4777888888888888888888877653
No 73
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=29.60 E-value=64 Score=20.05 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 021355 168 LQELQMQVRKLKAEIASLEYS 188 (313)
Q Consensus 168 I~~Lq~~~~~L~~~~~~l~~~ 188 (313)
+.+|+.++++|-.++..|+..
T Consensus 3 MnQLE~kVEeLl~~n~~Le~e 23 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXE 23 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHH
Confidence 345666666665555555443
No 74
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}
Probab=29.25 E-value=24 Score=28.10 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=12.9
Q ss_pred ChHHHHHHHHHHHhcCCCccc
Q 021355 288 NLPNLRLWVTGALLNQGFDVV 308 (313)
Q Consensus 288 ~~~~Lk~~v~~al~~~~~~~~ 308 (313)
+.+.|+++|.-||.+.||+||
T Consensus 98 s~e~L~~kL~~AI~~~gfGfv 118 (118)
T 3pt3_A 98 SKQILKQKLLLAIKTKNFGFV 118 (118)
T ss_dssp SHHHHHHHHHHHHC-------
T ss_pred CHHHHHHHHHHHHHhCCcCCC
Confidence 578999999999999999986
No 75
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=29.03 E-value=19 Score=25.81 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021355 165 VSYLQELQMQVRKLKAEIASLE 186 (313)
Q Consensus 165 i~YI~~Lq~~~~~L~~~~~~l~ 186 (313)
-.||..|+.+++.|+..+..|.
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3688888888888887776654
No 76
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=27.78 E-value=48 Score=20.88 Aligned_cols=18 Identities=28% Similarity=0.565 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021355 169 QELQMQVRKLKAEIASLE 186 (313)
Q Consensus 169 ~~Lq~~~~~L~~~~~~l~ 186 (313)
.+|+.++++|..++..|+
T Consensus 4 nQLE~kVEeLl~~~~~Le 21 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLE 21 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHH
Confidence 455555555555544444
No 77
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=26.52 E-value=78 Score=19.62 Aligned_cols=21 Identities=5% Similarity=0.230 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 021355 168 LQELQMQVRKLKAEIASLEYS 188 (313)
Q Consensus 168 I~~Lq~~~~~L~~~~~~l~~~ 188 (313)
+.+|+.++++|-.++..|+..
T Consensus 3 MnQLEdKVEeLl~~~~~Le~E 23 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENE 23 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHH
Confidence 345666666665555555443
No 78
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=25.73 E-value=82 Score=27.00 Aligned_cols=30 Identities=20% Similarity=0.160 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021355 159 SIIGDAVSYLQELQMQVRKLKAEIASLEYS 188 (313)
Q Consensus 159 siL~~Ai~YI~~Lq~~~~~L~~~~~~l~~~ 188 (313)
.+|.-+++-+..|+.+++.|+++++.|+..
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~E 174 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLRD 174 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888999999999999999998754
No 79
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=25.42 E-value=4.2e+02 Score=24.80 Aligned_cols=52 Identities=13% Similarity=0.171 Sum_probs=36.2
Q ss_pred eeCceEEEEEE-ecCCCCHHHHHHHHHHccCCceEEEEEeeec---CCeEEEEEEEE
Q 021355 227 VEERRFYLRLV-SSRGQGVAVSLYKALESLTSFDVQNFNFATE---PERLVLTFNLN 279 (313)
Q Consensus 227 v~~~~~~I~I~-c~~r~glL~~Il~aLe~l~gl~V~~a~ist~---~~~~~~t~~~k 279 (313)
...+.+.|.|. ...++|.+.+|+++|.+. +++|.....++. .+....+|++.
T Consensus 260 ~~~~~~~i~v~~~~~~~g~~~~If~~La~~-~I~vd~I~q~~s~~~~g~~~isf~v~ 315 (421)
T 3ab4_A 260 TDKSEAKVTVLGISDKPGEAAKVFRALADA-EINIDMVLQNVFSVEDGTTDITFTCP 315 (421)
T ss_dssp EECSEEEEEEEEEESSTTHHHHHHHHHHHT-TCCCEEEEECCCC--CCEEEEEEEEE
T ss_pred eeCCEEEEEEeccCCcccHHHHHHHHHHHc-CCcEEEEEccCccccCCcceEEEEEe
Confidence 44666788887 577899999999999999 888876643322 23344455543
No 80
>2rp4_A Transcription factor P53; DMP53, oligomerization domain, tetramerizaiton domain, nucleus; NMR {Drosophila melanogaster}
Probab=24.62 E-value=49 Score=24.16 Aligned_cols=36 Identities=8% Similarity=0.131 Sum_probs=28.8
Q ss_pred ceeEEEEeeCceEEEEEEecCCCCHHHHHHHHHHcc
Q 021355 220 MQIDVFQVEERRFYLRLVSSRGQGVAVSLYKALESL 255 (313)
Q Consensus 220 ~~VeV~~v~~~~~~I~I~c~~r~glL~~Il~aLe~l 255 (313)
.+-+|.+..++++.+-|+|++++=+|-.|=-++++-
T Consensus 10 ~dW~VsRt~dGdYrL~itcpkKe~LLqSIEgmik~a 45 (76)
T 2rp4_A 10 AEWNVSRTPDGDYRLAITCPNKEWLLQSIEGMIKEA 45 (76)
T ss_dssp CCCEEECCTTTBEEEEEEESCHHHHHHHHHHHHHHH
T ss_pred ccceeeeccCCceEEEEEeCcHHHHHHHHHHHHHHH
Confidence 456776777888999999999998888877776665
No 81
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=24.13 E-value=62 Score=20.10 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 021355 169 QELQMQVRKLKAEIASLEY 187 (313)
Q Consensus 169 ~~Lq~~~~~L~~~~~~l~~ 187 (313)
.+|+.++++|-.++..|+.
T Consensus 4 nQLEdkVEeLl~~~~~Le~ 22 (34)
T 2hy6_A 4 KQLADAVEELASANYHLAN 22 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHH
Confidence 4555555555555555443
No 82
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=23.91 E-value=3.1e+02 Score=22.65 Aligned_cols=52 Identities=12% Similarity=0.207 Sum_probs=33.5
Q ss_pred eeCceEEEEEEe-cCCCCHHHHHHHHHHccCCceEEEEE--eeec-CCeEEEEEEEE
Q 021355 227 VEERRFYLRLVS-SRGQGVAVSLYKALESLTSFDVQNFN--FATE-PERLVLTFNLN 279 (313)
Q Consensus 227 v~~~~~~I~I~c-~~r~glL~~Il~aLe~l~gl~V~~a~--ist~-~~~~~~t~~~k 279 (313)
...+.+.|.|.. ..++|.+.+|+.+|.+. |+.|.... ++.. .+..-.+|++.
T Consensus 12 ~~~~~~~Iti~~~~~~~G~~a~If~~La~~-~I~vd~I~q~~s~~~~g~~~isftv~ 67 (181)
T 3s1t_A 12 HDRSEAKVTIVGLPDIPGYAAKVFRAVADA-DVNIDMVLQNVSKVEDGKTDITFTCS 67 (181)
T ss_dssp EECSEEEEEEEEEESSTTHHHHHHHHHHHT-TCCCCCEEECCCCTTTCEEEEEEEEE
T ss_pred ecCCEEEEEEecCCCCcCHHHHHHHHHHHc-CCcEEEEEecCCcccCCccEEEEEEe
Confidence 345556666653 56799999999999999 78875543 2221 34444555543
No 83
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=23.57 E-value=2.1e+02 Score=21.35 Aligned_cols=45 Identities=24% Similarity=0.348 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021355 135 RGKMKEKLYGLRALVPNISKMDKASIIGDAVSYLQELQMQVRKLKAEIASLEY 187 (313)
Q Consensus 135 R~~in~~~~~LrslvP~~~k~dkasiL~~Ai~YI~~Lq~~~~~L~~~~~~l~~ 187 (313)
|.+.++.+..||.-+ ..=|..=++-|+.|+.++..++..+..|+.
T Consensus 35 rqkekEqL~~LKkkl--------~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 35 RARAKEQLAALKKHK--------ENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 777788888887643 222455556667777777777776666653
No 84
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=23.22 E-value=2.2e+02 Score=22.96 Aligned_cols=36 Identities=11% Similarity=0.177 Sum_probs=27.0
Q ss_pred eCceEEEEEEecC---CCCHHHHHHHHHHccCCceEEEEE
Q 021355 228 EERRFYLRLVSSR---GQGVAVSLYKALESLTSFDVQNFN 264 (313)
Q Consensus 228 ~~~~~~I~I~c~~---r~glL~~Il~aLe~l~gl~V~~a~ 264 (313)
.++-+.|.|.... .||++.+++++|.+. |++|.-.+
T Consensus 92 ~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~-~InI~~is 130 (167)
T 2dt9_A 92 RPDIAKVSIVGVGLASTPEVPAKMFQAVAST-GANIEMIA 130 (167)
T ss_dssp ECSEEEEEEEESSGGGSTHHHHHHHHHHHHT-TCCCCEEE
T ss_pred eCCEEEEEEECCCcccCcCHHHHHHHHHHHC-CCCEEEEE
Confidence 3445566666543 799999999999999 89985543
No 85
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=23.18 E-value=60 Score=23.77 Aligned_cols=22 Identities=14% Similarity=0.132 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 021355 166 SYLQELQMQVRKLKAEIASLEY 187 (313)
Q Consensus 166 ~YI~~Lq~~~~~L~~~~~~l~~ 187 (313)
.||..|+.+++.|+..+..+..
T Consensus 48 ~~~~~Le~rl~~le~~l~~~~~ 69 (96)
T 1pyi_A 48 SYVFFLEDRLAVMMRVLKEYGV 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 5999999999999998887643
No 86
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=22.86 E-value=1.2e+02 Score=22.68 Aligned_cols=18 Identities=33% Similarity=0.385 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 021355 129 VSERKRRGKMKEKLYGLRA 147 (313)
Q Consensus 129 ~~Er~RR~~in~~~~~Lrs 147 (313)
.+|+ ||..+.+-|.+=..
T Consensus 33 lAE~-RR~AL~eaL~EN~~ 50 (83)
T 1uii_A 33 VAEK-RRKALYEALKENEK 50 (83)
T ss_dssp HHHH-HHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHH
Confidence 3444 44555554444333
No 87
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=22.76 E-value=72 Score=22.87 Aligned_cols=21 Identities=14% Similarity=0.221 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021355 166 SYLQELQMQVRKLKAEIASLE 186 (313)
Q Consensus 166 ~YI~~Lq~~~~~L~~~~~~l~ 186 (313)
.||..|+++++.|+..+..+.
T Consensus 45 ~~~~~L~~r~~~le~~l~~l~ 65 (89)
T 3coq_A 45 AHLTEVESRLERLEQLFLLIF 65 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 599999999999998888774
No 88
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=22.18 E-value=72 Score=19.84 Aligned_cols=21 Identities=5% Similarity=0.254 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 021355 168 LQELQMQVRKLKAEIASLEYS 188 (313)
Q Consensus 168 I~~Lq~~~~~L~~~~~~l~~~ 188 (313)
+.+|+.++++|-.++..|+..
T Consensus 3 M~QLEdKVEeLl~~n~~Le~E 23 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENE 23 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHH
Confidence 345666666666666555543
No 89
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=21.84 E-value=1.4e+02 Score=26.45 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=22.8
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhccCCCCC
Q 021355 123 DRSRTLVSERKRRGKMKEKLYGLRALVPNIS 153 (313)
Q Consensus 123 ~r~~h~~~Er~RR~~in~~~~~LrslvP~~~ 153 (313)
.+......=|.||+++.+++..|..-=|...
T Consensus 101 ~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~ 131 (234)
T 3plt_A 101 NIEASVQPSRDRKEKITDEIAHLKYKDPQST 131 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhccCCCCc
Confidence 3444555668999999999999976656543
No 90
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=21.69 E-value=2e+02 Score=22.55 Aligned_cols=11 Identities=45% Similarity=0.516 Sum_probs=5.0
Q ss_pred cCCCCCCCChh
Q 021355 148 LVPNISKMDKA 158 (313)
Q Consensus 148 lvP~~~k~dka 158 (313)
|||...++++.
T Consensus 14 ~~~~~~~~~~~ 24 (110)
T 2v4h_A 14 LVPRGSHMASM 24 (110)
T ss_dssp CCCTTCCSSCC
T ss_pred CCcchhHhhHH
Confidence 44444444443
No 91
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=21.66 E-value=60 Score=22.31 Aligned_cols=25 Identities=16% Similarity=0.413 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCC
Q 021355 129 VSERKRRGKMKEKLYGLRALVPNIS 153 (313)
Q Consensus 129 ~~Er~RR~~in~~~~~LrslvP~~~ 153 (313)
.++|-+|...++-+.+|+.+.|+..
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD 27 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMD 27 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCC
Confidence 4688999999999999999999854
No 92
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=21.32 E-value=2e+02 Score=21.51 Aligned_cols=60 Identities=8% Similarity=0.204 Sum_probs=38.9
Q ss_pred HHHHHHHHHHccCC-ceEEEEEeeecCCeEEEEEEEEeeCCCccCChHHHHHHHHHHHhcC
Q 021355 244 VAVSLYKALESLTS-FDVQNFNFATEPERLVLTFNLNVKDCEQNMNLPNLRLWVTGALLNQ 303 (313)
Q Consensus 244 lL~~Il~aLe~l~g-l~V~~a~ist~~~~~~~t~~~kv~~~~~~i~~~~Lk~~v~~al~~~ 303 (313)
.+.+|.++|.+..| ..|....+-..|..++.++++.+.+...-.....+...|+.+|.++
T Consensus 11 ~~~~I~~~l~~~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~ 71 (107)
T 2zzt_A 11 MYDDIFAVLERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKR 71 (107)
T ss_dssp HHHHHHHHHTTCSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 45677788877642 4566666666777788899999864311123446788888887653
No 93
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=20.16 E-value=80 Score=20.09 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021355 163 DAVSYLQELQMQVRKLKAEIA 183 (313)
Q Consensus 163 ~Ai~YI~~Lq~~~~~L~~~~~ 183 (313)
.-|+-|+.|+++.+.|+.+..
T Consensus 17 syidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 17 NYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345667888888888877654
No 94
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=20.02 E-value=84 Score=19.52 Aligned_cols=21 Identities=0% Similarity=0.137 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 021355 168 LQELQMQVRKLKAEIASLEYS 188 (313)
Q Consensus 168 I~~Lq~~~~~L~~~~~~l~~~ 188 (313)
+.+|+.++++|-.++..|+..
T Consensus 3 MnQLEdKvEeLl~~~~~L~~E 23 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNE 23 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHHHH
Confidence 456666666666666555543
Done!