RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 021356
(313 letters)
>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase
(KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 226
Score = 279 bits (715), Expect = 3e-95
Identities = 189/226 (83%), Positives = 210/226 (92%)
Query: 68 TPFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQA 127
+ DF++SVFKK+ ++L+ DE+IVRGGR+LF LLPDAF GI QIGVIGWGSQ PAQA
Sbjct: 1 SATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQAPAQA 60
Query: 128 QNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187
QNL+DSL EAKSD+VVK+GLRKGS SFAEARAAGF+EENGTLGD++ETISGSDLVLLLIS
Sbjct: 61 QNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLIS 120
Query: 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247
D+AQADNYEK+FS MKPNSILGLSHGFLLGHLQS+G DFPKNI VIAVCPKGMGPSVRRL
Sbjct: 121 DSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGPSVRRL 180
Query: 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATT 293
YVQGKE+NGAGINSSFAVHQDVDGRAT+VALGWS+ALGSPFTFATT
Sbjct: 181 YVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTFATT 226
>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase
(KARI) {Pseudomonas aeruginosa [TaxId: 287]}
Length = 182
Score = 143 bits (361), Expect = 1e-42
Identities = 56/175 (32%), Positives = 89/175 (50%), Gaps = 20/175 (11%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ +IG+GSQG A A NL+D S + V VGLR GS + A+A A G D+
Sbjct: 18 KVAIIGYGSQGHAHACNLKD------SGVDVTVGLRSGSATVAKAEAHGLKV-----ADV 66
Query: 173 YETISGSDLVLLLISDAAQADNYEKIF-SCMKPNSILGLSHGFLLGHLQSIGLDFPKNIG 231
++ +D+V++L D Q Y++ +K + L +HGF + + Q ++
Sbjct: 67 KTAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSIHYNQV---VPRADLD 123
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286
VI + PK G +VR +V+G I A++QD G A NVAL ++ +G
Sbjct: 124 VIMIAPKAPGHTVRSEFVKGGG-----IPDLIAIYQDASGNAKNVALSYACGVGG 173
>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline
dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}
Length = 184
Score = 35.3 bits (80), Expect = 0.004
Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 4/111 (3%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAE----AKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169
V+G G+ G A A L +K +G+ AG +
Sbjct: 4 YAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLT 63
Query: 170 GDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQ 220
DI + +D++L+++ A I S + ++ L+ G G L+
Sbjct: 64 SDIGLAVKDADVILIVVPAIHHASIAANIASYISEGQLIILNPGATGGALE 114
>d1qmga1 a.100.1.2 (A:308-595) Class II ketol-acid reductoisomerase
{Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 288
Score = 31.7 bits (72), Expect = 0.093
Identities = 13/13 (100%), Positives = 13/13 (100%)
Query: 294 LEQEYKSDIFGER 306
LEQEYKSDIFGER
Sbjct: 1 LEQEYKSDIFGER 13
>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 152
Score = 26.7 bits (58), Expect = 2.5
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 113 QIGVIGWGSQGPAQAQNLRDS 133
++G IG+G A LR
Sbjct: 2 RVGFIGFGEVAQTLASRLRSR 22
>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 162
Score = 26.0 bits (56), Expect = 4.2
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 111 INQIGVIGWGSQGPAQAQNLRDS 133
+ QI IG G G A NL +
Sbjct: 1 MKQIAFIGLGHMGAPMATNLLKA 23
>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase
{Trypanosoma brucei [TaxId: 5691]}
Length = 178
Score = 26.1 bits (56), Expect = 4.7
Identities = 26/166 (15%), Positives = 47/166 (28%), Gaps = 20/166 (12%)
Query: 113 QIGVIGWGSQGPAQAQNLRDS--------LAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164
+GV+G G G A N+ + +KS+ +K A A AG +
Sbjct: 3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKAN--------ASAPFAGNLK 54
Query: 165 ENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSC-MKPNSILGLSHGFLLGHLQSIG 223
T+ ++ L+L+ A D+ + + IL +
Sbjct: 55 AFETMEAFAASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRA 114
Query: 224 LDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269
G R +G G S + + +
Sbjct: 115 QQLEAAGLRFLGMGISGGEEGAR---KGPAFFPGGTLSVWEEIRPI 157
>d1np3a1 a.100.1.2 (A:183-327) Class I ketol-acid reductoisomerase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 145
Score = 25.6 bits (56), Expect = 4.8
Identities = 5/12 (41%), Positives = 10/12 (83%)
Query: 295 EQEYKSDIFGER 306
+ E ++D+FGE+
Sbjct: 2 KDETETDLFGEQ 13
>d1hi9a_ c.99.1.1 (A:) Zn-dependent D-aminopeptidase DppA {Bacillus
subtilis [TaxId: 1423]}
Length = 274
Score = 26.3 bits (58), Expect = 5.5
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 240 MGPSVRRLYVQGKEINGAGINSSFAVHQDV 269
M VR Y+ + + G+N+ A + DV
Sbjct: 117 MIFGVRHFYINDRPVGELGLNAYVAGYYDV 146
>d1hm6a_ a.65.1.1 (A:) Annexin I {Pig (Sus scrofa) [TaxId: 9823]}
Length = 343
Score = 25.7 bits (56), Expect = 7.3
Identities = 8/28 (28%), Positives = 10/28 (35%)
Query: 4 GTLPSSPSIPKFSPSPSSETLKGAFKHL 31
G + P F+PS E L A
Sbjct: 30 GPGSAVSPYPTFNPSSDVEALHKAITVK 57
>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase
{Salmonella typhimurium [TaxId: 90371]}
Length = 161
Score = 25.1 bits (54), Expect = 8.9
Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 15/100 (15%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++G IG G G ++N L +A +VV + T
Sbjct: 2 KVGFIGLGIMGKPMSKN----LLKAGYSLVVSDRNPEAIADVIA-------AGAETASTA 50
Query: 173 YETISGSDLVLLLISDAAQADN----YEKIFSCMKPNSIL 208
D+++ ++ ++ I KP ++L
Sbjct: 51 KAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVL 90
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.381
Gapped
Lambda K H
0.267 0.0470 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,074,480
Number of extensions: 47819
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 11
Length of query: 313
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 228
Effective length of database: 1,240,546
Effective search space: 282844488
Effective search space used: 282844488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.8 bits)