Query 021360
Match_columns 313
No_of_seqs 315 out of 2845
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 02:21:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021360.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021360hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02940 riboflavin kinase 100.0 6.6E-62 1.4E-66 434.4 32.8 313 1-313 1-315 (382)
2 TIGR00083 ribF riboflavin kina 100.0 9.1E-34 2E-38 241.2 11.8 174 96-313 56-240 (288)
3 PRK05627 bifunctional riboflav 100.0 3.5E-32 7.6E-37 233.9 13.8 174 96-313 72-256 (305)
4 PRK10826 2-deoxyglucose-6-phos 100.0 1.1E-28 2.3E-33 206.5 22.5 208 7-215 5-216 (222)
5 COG0637 Predicted phosphatase/ 100.0 4.9E-29 1.1E-33 207.3 20.3 186 8-194 1-188 (221)
6 COG0196 RibF FAD synthase [Coe 100.0 2.5E-30 5.4E-35 219.3 11.1 172 96-313 74-256 (304)
7 PLN02770 haloacid dehalogenase 100.0 1.6E-28 3.4E-33 208.4 21.7 206 7-215 20-232 (248)
8 PLN03243 haloacid dehalogenase 100.0 1.6E-28 3.4E-33 208.6 20.8 207 7-216 22-232 (260)
9 COG0546 Gph Predicted phosphat 100.0 3E-28 6.5E-33 203.0 21.7 207 7-215 2-214 (220)
10 PRK10725 fructose-1-P/6-phosph 100.0 4.1E-28 8.8E-33 197.9 21.7 185 5-192 1-186 (188)
11 TIGR03351 PhnX-like phosphonat 100.0 2.9E-28 6.2E-33 203.7 20.9 205 9-214 1-215 (220)
12 PRK13288 pyrophosphatase PpaX; 100.0 3.2E-28 6.8E-33 202.5 21.0 201 8-214 2-206 (214)
13 PRK13226 phosphoglycolate phos 100.0 3E-28 6.4E-33 204.5 20.1 207 6-214 9-220 (229)
14 TIGR01449 PGP_bact 2-phosphogl 100.0 6.4E-28 1.4E-32 200.6 21.7 202 12-214 1-209 (213)
15 PLN02575 haloacid dehalogenase 100.0 7.2E-28 1.6E-32 211.5 22.4 207 8-216 130-339 (381)
16 PF01687 Flavokinase: Riboflav 100.0 1.5E-30 3.2E-35 193.3 4.0 77 232-313 1-77 (125)
17 PRK11587 putative phosphatase; 100.0 1.3E-27 2.9E-32 199.2 20.5 202 8-217 2-206 (218)
18 TIGR01422 phosphonatase phosph 100.0 1.8E-27 4E-32 203.0 21.1 187 9-196 2-205 (253)
19 PRK10563 6-phosphogluconate ph 100.0 2E-27 4.4E-32 198.7 20.0 203 8-214 3-208 (221)
20 PRK13478 phosphonoacetaldehyde 100.0 4.3E-27 9.4E-32 202.0 21.4 189 7-196 2-207 (267)
21 TIGR02253 CTE7 HAD superfamily 100.0 2.4E-27 5.2E-32 198.3 19.3 206 8-214 1-220 (221)
22 PRK13223 phosphoglycolate phos 100.0 8.1E-27 1.8E-31 200.2 21.1 208 7-215 11-226 (272)
23 TIGR01990 bPGM beta-phosphoglu 100.0 1.3E-26 2.9E-31 188.4 20.5 179 11-192 1-185 (185)
24 PRK13222 phosphoglycolate phos 100.0 5.6E-26 1.2E-30 190.7 23.5 208 7-215 4-218 (226)
25 TIGR02009 PGMB-YQAB-SF beta-ph 100.0 2.8E-26 6E-31 186.5 20.9 180 9-191 1-185 (185)
26 KOG2914 Predicted haloacid-hal 99.9 7.5E-26 1.6E-30 184.4 21.7 213 4-216 5-220 (222)
27 TIGR01454 AHBA_synth_RP 3-amin 99.9 4.9E-26 1.1E-30 188.1 20.3 195 12-214 1-199 (205)
28 PLN02811 hydrolase 99.9 6.9E-26 1.5E-30 189.1 21.0 206 16-221 1-213 (220)
29 PRK13225 phosphoglycolate phos 99.9 5E-26 1.1E-30 194.5 20.5 201 7-215 60-264 (273)
30 TIGR02254 YjjG/YfnB HAD superf 99.9 2.8E-25 6E-30 186.2 20.9 201 9-214 1-220 (224)
31 TIGR01428 HAD_type_II 2-haloal 99.9 2E-25 4.3E-30 183.5 18.3 179 9-194 1-194 (198)
32 PRK09449 dUMP phosphatase; Pro 99.9 4.1E-25 8.9E-30 185.2 19.9 197 8-214 2-218 (224)
33 PLN02779 haloacid dehalogenase 99.9 1.1E-24 2.3E-29 188.2 22.1 209 7-218 38-272 (286)
34 PRK06698 bifunctional 5'-methy 99.9 4.1E-25 8.9E-30 203.4 20.5 203 7-214 239-449 (459)
35 PLN02919 haloacid dehalogenase 99.9 1.5E-24 3.4E-29 215.2 23.9 209 7-216 73-287 (1057)
36 TIGR02252 DREG-2 REG-2-like, H 99.9 1E-24 2.2E-29 180.0 18.8 178 10-190 1-203 (203)
37 PF13419 HAD_2: Haloacid dehal 99.9 2.6E-25 5.7E-30 178.8 15.0 175 12-191 1-176 (176)
38 PRK14988 GMP/IMP nucleotidase; 99.9 2.1E-24 4.7E-29 180.1 17.8 107 88-195 90-197 (224)
39 PRK10748 flavin mononucleotide 99.9 3.7E-24 8E-29 180.6 17.4 202 6-214 7-234 (238)
40 TIGR01548 HAD-SF-IA-hyp1 haloa 99.9 3.6E-23 7.8E-28 169.8 18.9 173 10-184 1-197 (197)
41 TIGR01509 HAD-SF-IA-v3 haloaci 99.9 7.8E-23 1.7E-27 165.9 18.4 175 11-191 1-183 (183)
42 TIGR02247 HAD-1A3-hyp Epoxide 99.9 6E-23 1.3E-27 170.4 16.6 179 9-193 2-197 (211)
43 PRK09456 ?-D-glucose-1-phospha 99.9 1.3E-22 2.9E-27 166.7 17.6 178 11-194 2-187 (199)
44 TIGR01993 Pyr-5-nucltdase pyri 99.9 1.2E-22 2.5E-27 165.0 15.3 170 10-191 1-184 (184)
45 KOG3110 Riboflavin kinase [Coe 99.9 1.1E-23 2.3E-28 151.3 6.7 85 229-313 5-89 (153)
46 COG1011 Predicted hydrolase (H 99.9 1.2E-21 2.7E-26 164.6 19.4 124 89-214 97-222 (229)
47 TIGR01549 HAD-SF-IA-v1 haloaci 99.9 2.6E-21 5.6E-26 152.5 16.9 154 11-185 1-154 (154)
48 PHA02597 30.2 hypothetical pro 99.9 1.1E-21 2.3E-26 161.1 15.1 187 8-214 1-194 (197)
49 PRK07143 hypothetical protein; 99.9 4.6E-22 1E-26 168.4 12.6 103 177-313 126-228 (279)
50 TIGR01493 HAD-SF-IA-v2 Haloaci 99.9 5.4E-22 1.2E-26 159.8 11.5 161 11-184 1-175 (175)
51 TIGR00338 serB phosphoserine p 99.8 4.7E-20 1E-24 154.0 15.1 186 5-209 10-208 (219)
52 KOG3085 Predicted hydrolase (H 99.8 5E-20 1.1E-24 150.7 14.2 186 6-193 4-214 (237)
53 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.8 3.7E-19 8.1E-24 146.5 15.8 176 8-193 3-191 (201)
54 TIGR01691 enolase-ppase 2,3-di 99.8 7.2E-18 1.6E-22 139.2 21.2 184 9-195 1-199 (220)
55 TIGR00213 GmhB_yaeD D,D-heptos 99.8 4.7E-19 1E-23 142.5 12.7 123 89-214 24-174 (176)
56 TIGR01656 Histidinol-ppas hist 99.8 3.2E-19 7E-24 139.1 10.3 102 90-193 26-146 (147)
57 PRK08942 D,D-heptose 1,7-bisph 99.8 8.2E-19 1.8E-23 141.9 12.7 122 90-214 28-172 (181)
58 PLN02954 phosphoserine phospha 99.8 5E-18 1.1E-22 142.2 16.1 192 7-214 10-219 (224)
59 PRK06769 hypothetical protein; 99.8 1E-18 2.2E-23 139.9 11.0 124 90-214 27-167 (173)
60 PRK11133 serB phosphoserine ph 99.8 5.1E-18 1.1E-22 147.9 16.0 184 7-209 108-304 (322)
61 TIGR01672 AphA HAD superfamily 99.8 1.7E-17 3.6E-22 138.0 15.7 146 11-196 65-215 (237)
62 KOG3109 Haloacid dehalogenase- 99.8 2.9E-17 6.2E-22 129.8 15.7 200 6-214 12-223 (244)
63 TIGR01662 HAD-SF-IIIA HAD-supe 99.8 5E-18 1.1E-22 130.2 11.2 99 90-193 24-132 (132)
64 TIGR01261 hisB_Nterm histidino 99.8 6.3E-18 1.4E-22 133.1 11.2 102 90-194 28-149 (161)
65 TIGR01685 MDP-1 magnesium-depe 99.8 2.7E-18 5.9E-23 135.9 8.9 107 88-195 42-160 (174)
66 PRK09552 mtnX 2-hydroxy-3-keto 99.7 8.2E-17 1.8E-21 134.2 15.2 164 9-188 3-183 (219)
67 cd01427 HAD_like Haloacid deha 99.7 1.3E-16 2.8E-21 122.6 11.2 103 88-191 21-139 (139)
68 TIGR01664 DNA-3'-Pase DNA 3'-p 99.7 1.7E-16 3.7E-21 125.8 11.7 96 92-190 43-160 (166)
69 PRK13582 thrH phosphoserine ph 99.7 5.9E-16 1.3E-20 127.8 15.3 184 9-214 1-191 (205)
70 TIGR01489 DKMTPPase-SF 2,3-dik 99.7 9E-16 2E-20 124.9 14.6 96 88-187 69-184 (188)
71 COG0560 SerB Phosphoserine pho 99.7 3.6E-15 7.8E-20 122.7 14.1 103 90-193 76-188 (212)
72 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.6 6.5E-15 1.4E-19 121.3 15.7 179 11-192 1-198 (202)
73 TIGR02137 HSK-PSP phosphoserin 99.6 2E-14 4.4E-19 117.6 16.9 160 9-193 1-172 (203)
74 TIGR01452 PGP_euk phosphoglyco 99.6 7.3E-16 1.6E-20 133.1 7.9 121 92-213 144-278 (279)
75 TIGR01458 HAD-SF-IIA-hyp3 HAD- 99.6 8.7E-16 1.9E-20 130.8 7.9 122 92-214 121-250 (257)
76 TIGR01681 HAD-SF-IIIC HAD-supe 99.6 3.2E-15 7E-20 113.5 9.3 88 91-183 29-126 (128)
77 PRK05446 imidazole glycerol-ph 99.6 9.4E-15 2E-19 128.2 13.2 102 89-193 28-149 (354)
78 TIGR03333 salvage_mtnX 2-hydro 99.6 3.1E-14 6.7E-19 118.2 14.9 160 12-186 2-177 (214)
79 TIGR01668 YqeG_hyp_ppase HAD s 99.6 2.3E-14 5E-19 114.4 13.4 98 91-198 43-142 (170)
80 TIGR01488 HAD-SF-IB Haloacid D 99.6 3E-14 6.6E-19 114.8 13.1 96 88-184 70-177 (177)
81 COG2179 Predicted hydrolase of 99.6 4.2E-14 9.1E-19 107.6 11.4 98 91-198 46-144 (175)
82 TIGR02726 phenyl_P_delta pheny 99.6 1.2E-14 2.7E-19 114.9 9.0 97 100-209 43-139 (169)
83 PRK08238 hypothetical protein; 99.6 1E-14 2.2E-19 133.6 9.3 206 8-241 9-217 (479)
84 PF00702 Hydrolase: haloacid d 99.6 1.8E-14 3.8E-19 119.7 9.9 90 90-185 126-215 (215)
85 TIGR01670 YrbI-phosphatas 3-de 99.6 1.4E-14 3E-19 113.7 8.2 100 99-211 36-135 (154)
86 PRK11009 aphA acid phosphatase 99.6 7.2E-14 1.6E-18 116.2 12.9 99 88-196 111-215 (237)
87 PHA02530 pseT polynucleotide k 99.5 6.4E-14 1.4E-18 122.6 12.4 105 89-194 185-298 (300)
88 PRK11590 hypothetical protein; 99.5 8.3E-13 1.8E-17 109.4 17.0 176 8-191 5-202 (211)
89 PRK10444 UMP phosphatase; Prov 99.5 9.4E-14 2E-18 117.3 9.5 72 144-215 170-246 (248)
90 TIGR01457 HAD-SF-IIA-hyp2 HAD- 99.5 1.2E-13 2.6E-18 117.2 8.4 77 137-213 167-248 (249)
91 PLN02645 phosphoglycolate phos 99.5 1E-13 2.2E-18 121.5 6.4 105 109-214 188-303 (311)
92 PRK09484 3-deoxy-D-manno-octul 99.4 5.9E-13 1.3E-17 107.6 6.9 98 99-209 56-153 (183)
93 PF06888 Put_Phosphatase: Puta 99.4 1.4E-11 3.1E-16 101.9 14.7 169 11-193 2-197 (234)
94 COG0241 HisB Histidinol phosph 99.4 8.8E-12 1.9E-16 98.3 12.5 103 89-194 29-151 (181)
95 TIGR01686 FkbH FkbH-like domai 99.4 2.3E-12 4.9E-17 113.4 9.7 91 91-187 31-125 (320)
96 COG4229 Predicted enolase-phos 99.4 7.9E-11 1.7E-15 90.7 16.4 105 89-195 101-207 (229)
97 PRK10530 pyridoxal phosphate ( 99.4 5.4E-12 1.2E-16 108.8 11.2 114 92-213 138-260 (272)
98 smart00577 CPDc catalytic doma 99.4 1.1E-12 2.4E-17 102.3 6.2 96 89-189 43-139 (148)
99 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.4 1.1E-12 2.4E-17 111.0 6.2 98 93-192 140-241 (242)
100 TIGR01663 PNK-3'Pase polynucle 99.4 6.2E-12 1.4E-16 115.8 11.4 92 92-186 198-305 (526)
101 TIGR01545 YfhB_g-proteo haloac 99.3 9.4E-11 2E-15 96.7 15.4 117 71-192 74-202 (210)
102 COG0647 NagD Predicted sugar p 99.3 8.2E-11 1.8E-15 99.2 13.4 72 145-216 187-263 (269)
103 TIGR01544 HAD-SF-IE haloacid d 99.3 9E-11 1.9E-15 99.3 13.0 96 88-184 118-230 (277)
104 TIGR02244 HAD-IG-Ncltidse HAD 99.3 8.4E-10 1.8E-14 96.4 18.9 105 89-194 182-325 (343)
105 TIGR01460 HAD-SF-IIA Haloacid 99.2 2.3E-11 5.1E-16 102.4 8.5 48 146-193 186-235 (236)
106 PF13242 Hydrolase_like: HAD-h 99.2 3.8E-11 8.2E-16 82.1 7.1 68 146-213 2-74 (75)
107 PF12689 Acid_PPase: Acid Phos 99.2 9.6E-11 2.1E-15 92.1 9.6 103 88-196 42-155 (169)
108 PRK01158 phosphoglycolate phos 99.2 2.1E-11 4.5E-16 102.5 5.9 65 146-213 154-218 (230)
109 KOG1615 Phosphoserine phosphat 99.2 1.3E-10 2.7E-15 90.7 9.5 93 88-183 85-191 (227)
110 TIGR01456 CECR5 HAD-superfamil 99.2 1.7E-09 3.8E-14 95.2 16.2 69 146-214 231-316 (321)
111 TIGR01482 SPP-subfamily Sucros 99.1 7.7E-11 1.7E-15 98.7 6.0 66 145-213 145-210 (225)
112 PF12710 HAD: haloacid dehalog 99.1 6.6E-10 1.4E-14 90.6 10.1 85 94-182 92-192 (192)
113 PF08645 PNK3P: Polynucleotide 99.1 1.1E-09 2.3E-14 86.1 9.1 95 92-189 30-153 (159)
114 TIGR01487 SPP-like sucrose-pho 99.0 1.8E-09 4E-14 89.7 10.8 97 112-213 112-208 (215)
115 PTZ00445 p36-lilke protein; Pr 99.0 4.8E-09 1E-13 84.0 11.4 102 91-193 75-206 (219)
116 TIGR01684 viral_ppase viral ph 99.0 2.2E-09 4.8E-14 90.6 8.8 60 94-154 149-208 (301)
117 KOG3040 Predicted sugar phosph 99.0 1.3E-09 2.7E-14 86.1 6.6 206 6-213 4-251 (262)
118 PRK00192 mannosyl-3-phosphogly 99.0 1.2E-08 2.6E-13 88.0 13.2 45 149-193 190-235 (273)
119 TIGR01533 lipo_e_P4 5'-nucleot 99.0 1.8E-08 3.8E-13 85.4 13.6 85 88-180 115-203 (266)
120 COG1778 Low specificity phosph 98.9 5.4E-10 1.2E-14 84.3 3.1 84 100-193 44-127 (170)
121 COG0561 Cof Predicted hydrolas 98.9 2.3E-09 5.1E-14 92.0 7.4 65 146-213 186-250 (264)
122 PF09419 PGP_phosphatase: Mito 98.9 2.8E-08 6.1E-13 77.9 11.5 92 92-194 60-166 (168)
123 PRK10513 sugar phosphate phosp 98.9 2.2E-09 4.7E-14 92.5 5.8 66 145-213 192-257 (270)
124 KOG3120 Predicted haloacid deh 98.9 3.8E-08 8.2E-13 78.6 12.0 172 8-193 12-210 (256)
125 PRK15126 thiamin pyrimidine py 98.9 2.3E-08 5E-13 86.2 11.7 65 146-213 185-251 (272)
126 KOG2882 p-Nitrophenyl phosphat 98.9 1.3E-08 2.8E-13 85.4 9.2 70 146-215 222-300 (306)
127 PRK10976 putative hydrolase; P 98.9 1.8E-08 3.9E-13 86.6 10.5 65 146-213 187-253 (266)
128 PLN02887 hydrolase family prot 98.8 5.9E-08 1.3E-12 91.1 12.3 66 145-213 503-568 (580)
129 TIGR02463 MPGP_rel mannosyl-3- 98.8 1.4E-07 3.1E-12 78.7 13.0 44 147-190 177-220 (221)
130 COG4359 Uncharacterized conser 98.7 3.3E-07 7.1E-12 71.2 12.5 117 54-186 45-180 (220)
131 PRK03669 mannosyl-3-phosphogly 98.7 2.5E-08 5.4E-13 85.9 6.9 49 145-193 183-234 (271)
132 TIGR02471 sucr_syn_bact_C sucr 98.7 6.6E-08 1.4E-12 81.6 9.3 49 144-192 154-202 (236)
133 TIGR00099 Cof-subfamily Cof su 98.7 3.4E-08 7.5E-13 84.3 7.3 65 146-213 185-249 (256)
134 cd02064 FAD_synthetase_N FAD s 98.7 4.4E-08 9.4E-13 78.9 6.5 113 95-246 57-180 (180)
135 TIGR02251 HIF-SF_euk Dullard-l 98.7 1.4E-08 3E-13 80.2 3.5 100 89-193 40-140 (162)
136 PF06941 NT5C: 5' nucleotidase 98.6 1E-07 2.2E-12 77.6 7.4 167 10-213 2-180 (191)
137 TIGR01485 SPP_plant-cyano sucr 98.6 5.3E-07 1.1E-11 76.7 11.5 50 144-193 162-211 (249)
138 PHA03398 viral phosphatase sup 98.6 2E-07 4.3E-12 79.0 8.1 51 94-145 151-201 (303)
139 TIGR01525 ATPase-IB_hvy heavy 98.6 2.7E-07 5.9E-12 87.4 9.5 105 90-209 383-488 (556)
140 PF08282 Hydrolase_3: haloacid 98.6 7.9E-07 1.7E-11 75.3 11.5 65 146-213 183-247 (254)
141 TIGR01459 HAD-SF-IIA-hyp4 HAD- 98.5 1.9E-07 4E-12 79.1 6.9 91 90-186 23-116 (242)
142 TIGR01512 ATPase-IB2_Cd heavy 98.5 4.4E-07 9.6E-12 85.6 8.8 112 89-214 360-474 (536)
143 TIGR02461 osmo_MPG_phos mannos 98.4 3.8E-07 8.2E-12 76.2 6.3 44 147-190 179-224 (225)
144 KOG2630 Enolase-phosphatase E- 98.4 2E-05 4.3E-10 63.7 15.2 105 90-195 122-227 (254)
145 PF13344 Hydrolase_6: Haloacid 98.4 3.5E-06 7.7E-11 60.9 9.0 84 91-186 14-100 (101)
146 TIGR01675 plant-AP plant acid 98.4 8.6E-06 1.9E-10 67.3 12.4 103 88-193 117-223 (229)
147 TIGR01486 HAD-SF-IIB-MPGP mann 98.4 6.4E-07 1.4E-11 76.5 5.9 48 146-193 173-222 (256)
148 TIGR02250 FCP1_euk FCP1-like p 98.4 8.1E-07 1.8E-11 69.5 5.7 86 88-180 55-142 (156)
149 TIGR01484 HAD-SF-IIB HAD-super 98.3 2.3E-06 5E-11 70.4 8.5 45 145-189 159-203 (204)
150 PF05761 5_nucleotid: 5' nucle 98.3 3.1E-05 6.8E-10 70.6 15.6 105 90-194 182-326 (448)
151 COG4996 Predicted phosphatase 98.3 2.3E-06 4.9E-11 62.7 6.2 90 88-182 38-133 (164)
152 smart00775 LNS2 LNS2 domain. T 98.3 1.4E-05 3E-10 62.7 10.9 92 93-187 29-141 (157)
153 TIGR01511 ATPase-IB1_Cu copper 98.3 3.5E-06 7.7E-11 79.9 8.7 104 90-209 404-507 (562)
154 PLN02177 glycerol-3-phosphate 98.2 8.3E-05 1.8E-09 68.9 16.4 92 92-192 111-215 (497)
155 COG4087 Soluble P-type ATPase 98.2 9.9E-06 2.1E-10 59.5 7.8 115 89-214 28-142 (152)
156 PLN02382 probable sucrose-phos 98.2 4E-05 8.7E-10 69.8 13.6 48 146-193 172-223 (413)
157 PF05116 S6PP: Sucrose-6F-phos 98.2 1.8E-05 3.9E-10 67.1 10.1 47 146-193 162-208 (247)
158 PRK10671 copA copper exporting 98.2 9.1E-06 2E-10 80.8 9.5 89 90-190 649-737 (834)
159 TIGR01522 ATPase-IIA2_Ca golgi 98.1 9.1E-06 2E-10 81.2 8.9 115 91-208 528-658 (884)
160 PRK12702 mannosyl-3-phosphogly 98.1 6E-05 1.3E-09 64.3 12.2 47 147-193 206-254 (302)
161 PF11019 DUF2608: Protein of u 98.1 0.00029 6.3E-09 59.7 16.3 105 89-193 79-210 (252)
162 PRK14502 bifunctional mannosyl 98.1 0.0002 4.4E-09 67.8 16.1 47 147-193 611-659 (694)
163 PF03767 Acid_phosphat_B: HAD 97.9 9.7E-06 2.1E-10 67.7 4.4 101 90-193 114-223 (229)
164 TIGR01680 Veg_Stor_Prot vegeta 97.9 0.00018 4E-09 60.6 11.2 102 88-193 142-250 (275)
165 PF03031 NIF: NLI interacting 97.9 3.4E-06 7.3E-11 66.6 0.7 92 89-185 34-126 (159)
166 COG3700 AphA Acid phosphatase 97.9 0.00014 3E-09 56.5 9.0 96 91-193 114-212 (237)
167 PRK11033 zntA zinc/cadmium/mer 97.8 0.00013 2.9E-09 71.4 10.5 88 90-191 567-654 (741)
168 COG3882 FkbH Predicted enzyme 97.7 0.00051 1.1E-08 61.7 10.9 93 94-193 258-354 (574)
169 COG5663 Uncharacterized conser 97.6 0.00067 1.4E-08 52.2 9.0 95 89-196 70-165 (194)
170 PLN02423 phosphomannomutase 97.5 3.1E-05 6.6E-10 65.6 1.3 43 146-193 186-232 (245)
171 TIGR01497 kdpB K+-transporting 97.5 0.00064 1.4E-08 65.3 9.6 89 91-191 446-534 (675)
172 PLN02645 phosphoglycolate phos 97.5 0.001 2.2E-08 58.5 10.3 90 91-190 44-136 (311)
173 PTZ00174 phosphomannomutase; P 97.5 0.00026 5.5E-09 60.1 6.3 30 96-125 27-56 (247)
174 TIGR01116 ATPase-IIA1_Ca sarco 97.5 0.00044 9.6E-09 69.5 8.5 116 91-210 537-672 (917)
175 COG2503 Predicted secreted aci 97.4 0.0025 5.5E-08 52.3 10.8 85 88-180 119-208 (274)
176 TIGR01689 EcbF-BcbF capsule bi 97.4 0.0011 2.4E-08 49.6 8.1 31 91-121 24-54 (126)
177 PRK14010 potassium-transportin 97.4 0.0015 3.3E-08 62.9 10.5 89 91-191 441-529 (673)
178 PRK01122 potassium-transportin 97.3 0.0015 3.2E-08 63.0 10.0 89 91-191 445-533 (679)
179 TIGR01517 ATPase-IIB_Ca plasma 97.3 0.00098 2.1E-08 67.3 8.2 100 91-191 579-694 (941)
180 COG2217 ZntA Cation transport 97.2 0.0017 3.7E-08 62.8 9.1 91 90-192 536-626 (713)
181 TIGR01647 ATPase-IIIA_H plasma 97.2 0.00094 2E-08 65.8 7.4 97 91-191 442-560 (755)
182 TIGR01523 ATPase-IID_K-Na pota 97.2 0.0015 3.3E-08 66.4 8.8 116 91-209 646-787 (1053)
183 PF05152 DUF705: Protein of un 97.2 0.0021 4.6E-08 54.2 7.8 52 92-144 143-194 (297)
184 TIGR01524 ATPase-IIIB_Mg magne 97.1 0.0018 3.8E-08 64.8 8.6 98 91-191 515-628 (867)
185 PRK10517 magnesium-transportin 97.1 0.0014 3E-08 65.7 7.8 98 91-191 550-663 (902)
186 TIGR02245 HAD_IIID1 HAD-superf 97.1 0.0017 3.8E-08 52.5 6.8 94 91-186 45-150 (195)
187 PRK14501 putative bifunctional 97.1 0.0048 1E-07 60.7 10.8 38 146-185 654-691 (726)
188 PF08235 LNS2: LNS2 (Lipin/Ned 97.0 0.0089 1.9E-07 46.4 9.8 93 92-187 28-141 (157)
189 PRK15122 magnesium-transportin 97.0 0.0022 4.7E-08 64.4 8.0 98 91-191 550-663 (903)
190 KOG2470 Similar to IMP-GMP spe 97.0 0.032 7E-07 48.4 13.5 104 90-193 239-376 (510)
191 COG0474 MgtA Cation transport 97.0 0.0025 5.5E-08 64.0 8.1 105 89-194 545-667 (917)
192 TIGR01106 ATPase-IIC_X-K sodiu 96.8 0.005 1.1E-07 62.6 8.6 100 91-191 568-709 (997)
193 PLN02499 glycerol-3-phosphate 96.8 0.018 4E-07 52.9 10.9 81 99-185 101-192 (498)
194 COG0647 NagD Predicted sugar p 96.4 0.029 6.3E-07 47.8 9.5 53 91-143 24-79 (269)
195 KOG0207 Cation transport ATPas 96.4 0.018 3.9E-07 56.0 9.0 91 90-192 722-812 (951)
196 PLN02205 alpha,alpha-trehalose 96.4 0.033 7.1E-07 55.5 11.1 39 147-185 760-801 (854)
197 TIGR01494 ATPase_P-type ATPase 96.3 0.025 5.5E-07 53.2 9.1 86 90-190 346-431 (499)
198 COG5610 Predicted hydrolase (H 96.2 0.018 3.9E-07 51.7 7.0 98 93-191 101-201 (635)
199 KOG0202 Ca2+ transporting ATPa 96.1 0.019 4E-07 55.4 7.4 104 90-194 583-706 (972)
200 TIGR00685 T6PP trehalose-phosp 96.0 0.011 2.5E-07 49.9 5.1 62 149-214 167-235 (244)
201 COG4030 Uncharacterized protei 96.0 0.091 2E-06 43.0 9.7 41 89-131 81-121 (315)
202 TIGR01657 P-ATPase-V P-type AT 96.0 0.072 1.6E-06 54.8 11.4 42 90-132 655-696 (1054)
203 TIGR01452 PGP_euk phosphoglyco 96.0 0.069 1.5E-06 46.2 9.7 88 91-189 18-108 (279)
204 PRK10187 trehalose-6-phosphate 95.6 0.038 8.2E-07 47.4 6.5 41 150-190 175-219 (266)
205 COG3769 Predicted hydrolase (H 95.5 0.16 3.4E-06 41.4 9.1 26 164-189 207-233 (274)
206 KOG2961 Predicted hydrolase (H 95.5 0.16 3.4E-06 38.8 8.5 101 90-196 60-171 (190)
207 TIGR01652 ATPase-Plipid phosph 94.8 0.097 2.1E-06 53.9 7.8 122 90-214 630-815 (1057)
208 COG4502 5'(3')-deoxyribonucleo 94.8 0.03 6.5E-07 42.0 3.0 137 8-183 2-145 (180)
209 KOG2134 Polynucleotide kinase 94.7 0.15 3.2E-06 45.1 7.4 95 91-188 104-229 (422)
210 PRK10187 trehalose-6-phosphate 94.6 0.041 8.8E-07 47.2 4.0 14 10-23 15-28 (266)
211 KOG0204 Calcium transporting A 94.2 0.18 3.8E-06 49.1 7.4 116 90-209 646-780 (1034)
212 cd02169 Citrate_lyase_ligase C 94.2 0.017 3.7E-07 50.1 0.8 35 183-218 250-284 (297)
213 PLN03190 aminophospholipid tra 93.7 0.17 3.7E-06 52.4 6.8 49 166-216 872-920 (1178)
214 PF05822 UMPH-1: Pyrimidine 5' 93.5 0.47 1E-05 39.8 8.0 94 88-184 87-198 (246)
215 TIGR01457 HAD-SF-IIA-hyp2 HAD- 93.3 0.89 1.9E-05 38.6 9.6 49 92-141 18-69 (249)
216 KOG1618 Predicted phosphatase 93.1 0.19 4.2E-06 43.2 5.1 101 10-131 36-140 (389)
217 COG2216 KdpB High-affinity K+ 92.9 0.29 6.2E-06 45.1 6.2 89 91-191 447-535 (681)
218 TIGR01658 EYA-cons_domain eyes 92.8 0.81 1.8E-05 38.1 8.1 62 129-194 196-259 (274)
219 smart00764 Citrate_ly_lig Citr 92.8 0.11 2.3E-06 41.8 3.1 75 114-218 92-169 (182)
220 PLN02580 trehalose-phosphatase 92.5 0.28 6E-06 44.2 5.5 35 90-125 140-174 (384)
221 PLN03017 trehalose-phosphatase 92.3 0.4 8.7E-06 42.8 6.2 33 92-125 134-166 (366)
222 PLN02151 trehalose-phosphatase 91.8 0.36 7.9E-06 42.9 5.4 34 91-125 120-153 (354)
223 PRK10444 UMP phosphatase; Prov 91.7 1.4 3.1E-05 37.3 8.8 50 91-141 17-69 (248)
224 KOG4549 Magnesium-dependent ph 91.3 0.95 2.1E-05 33.5 6.1 83 89-177 42-134 (144)
225 TIGR01460 HAD-SF-IIA Haloacid 90.3 3.2 6.9E-05 34.9 9.6 87 90-187 13-102 (236)
226 COG1877 OtsB Trehalose-6-phosp 90.1 0.81 1.7E-05 39.1 5.7 36 90-125 39-75 (266)
227 TIGR01458 HAD-SF-IIA-hyp3 HAD- 88.6 0.68 1.5E-05 39.5 4.4 49 92-141 22-73 (257)
228 KOG0206 P-type ATPase [General 88.6 4.2 9.2E-05 41.9 10.4 51 71-121 624-681 (1151)
229 PTZ00174 phosphomannomutase; P 87.9 0.63 1.4E-05 39.4 3.7 43 146-192 185-231 (247)
230 KOG1605 TFIIF-interacting CTD 87.1 0.087 1.9E-06 44.6 -2.0 94 90-188 130-224 (262)
231 KOG2116 Protein involved in pl 86.8 1.3 2.8E-05 42.0 5.2 88 95-187 562-672 (738)
232 TIGR01456 CECR5 HAD-superfamil 83.8 5.7 0.00012 35.1 7.8 88 90-190 15-109 (321)
233 PF06574 FAD_syn: FAD syntheta 82.8 0.5 1.1E-05 37.0 0.6 66 95-164 63-139 (157)
234 KOG2469 IMP-GMP specific 5'-nu 82.8 3.5 7.5E-05 37.0 5.8 100 94-193 201-334 (424)
235 TIGR00685 T6PP trehalose-phosp 81.8 0.84 1.8E-05 38.5 1.7 15 9-23 3-17 (244)
236 PF06189 5-nucleotidase: 5'-nu 81.8 15 0.00033 31.1 8.9 72 107-194 186-260 (264)
237 PLN03063 alpha,alpha-trehalose 80.5 3.1 6.8E-05 41.6 5.4 35 91-125 532-567 (797)
238 PRK00192 mannosyl-3-phosphogly 79.9 4.3 9.3E-05 34.8 5.5 42 93-135 23-64 (273)
239 KOG3189 Phosphomannomutase [Li 79.5 1.6 3.5E-05 35.1 2.4 28 10-37 12-39 (252)
240 PRK10513 sugar phosphate phosp 79.0 6 0.00013 33.7 6.1 40 92-132 21-60 (270)
241 KOG2882 p-Nitrophenyl phosphat 79.0 17 0.00037 31.5 8.5 96 89-193 36-133 (306)
242 PLN03064 alpha,alpha-trehalose 78.4 4.7 0.0001 40.9 5.8 36 90-125 621-657 (934)
243 TIGR02461 osmo_MPG_phos mannos 76.9 6 0.00013 32.9 5.3 40 93-133 17-56 (225)
244 smart00577 CPDc catalytic doma 75.2 2 4.3E-05 33.2 1.9 16 10-25 3-18 (148)
245 TIGR02463 MPGP_rel mannosyl-3- 74.5 7.1 0.00015 32.1 5.2 36 96-132 21-56 (221)
246 PF13580 SIS_2: SIS domain; PD 74.4 35 0.00076 25.8 9.2 98 95-192 23-137 (138)
247 TIGR01487 SPP-like sucrose-pho 74.2 6.4 0.00014 32.3 4.8 40 92-132 19-58 (215)
248 COG5083 SMP2 Uncharacterized p 74.0 3.7 7.9E-05 37.3 3.3 18 7-24 373-390 (580)
249 TIGR02468 sucrsPsyn_pln sucros 74.0 27 0.00058 36.0 9.7 70 119-191 924-1000(1050)
250 TIGR00099 Cof-subfamily Cof su 73.0 10 0.00022 32.1 5.9 40 92-132 17-56 (256)
251 COG4850 Uncharacterized conser 73.0 17 0.00036 31.9 6.9 85 89-180 194-293 (373)
252 KOG0209 P-type ATPase [Inorgan 72.9 4.1 8.8E-05 40.1 3.6 31 90-120 674-704 (1160)
253 KOG3128 Uncharacterized conser 72.9 3.9 8.4E-05 34.3 3.0 95 89-184 136-247 (298)
254 PRK01158 phosphoglycolate phos 72.6 7.7 0.00017 32.1 5.0 41 92-133 21-61 (230)
255 KOG3107 Predicted haloacid deh 72.4 15 0.00033 32.8 6.6 44 149-193 409-452 (468)
256 PTZ00445 p36-lilke protein; Pr 72.4 2.3 4.9E-05 34.8 1.6 16 7-22 41-56 (219)
257 PLN02580 trehalose-phosphatase 72.2 6.6 0.00014 35.5 4.6 37 147-183 299-338 (384)
258 KOG0210 P-type ATPase [Inorgan 72.0 10 0.00022 36.8 5.9 97 91-192 711-808 (1051)
259 PF08057 Ery_res_leader2: Eryt 71.7 1.6 3.4E-05 18.3 0.3 8 254-261 7-14 (14)
260 TIGR02251 HIF-SF_euk Dullard-l 71.7 2.4 5.1E-05 33.4 1.5 15 10-24 2-16 (162)
261 PRK15126 thiamin pyrimidine py 69.6 9.8 0.00021 32.5 5.1 41 92-133 20-60 (272)
262 TIGR01486 HAD-SF-IIB-MPGP mann 68.7 15 0.00033 31.1 6.0 37 95-132 20-56 (256)
263 COG0731 Fe-S oxidoreductases [ 68.4 22 0.00048 30.9 6.8 38 88-125 89-127 (296)
264 PRK10976 putative hydrolase; P 68.3 16 0.00034 31.1 6.1 40 92-132 20-59 (266)
265 TIGR01482 SPP-subfamily Sucros 67.9 11 0.00023 31.0 4.9 40 92-132 16-55 (225)
266 KOG0323 TFIIF-interacting CTD 67.5 6 0.00013 38.0 3.5 53 89-143 199-253 (635)
267 PRK00994 F420-dependent methyl 67.1 75 0.0016 26.6 9.5 87 100-193 23-117 (277)
268 PRK10530 pyridoxal phosphate ( 66.8 12 0.00026 31.8 5.1 40 92-132 21-60 (272)
269 PRK12702 mannosyl-3-phosphogly 66.8 12 0.00027 32.4 5.0 39 94-133 21-59 (302)
270 PLN02588 glycerol-3-phosphate 66.4 9.4 0.0002 35.7 4.4 37 101-142 140-176 (525)
271 COG0561 Cof Predicted hydrolas 62.4 19 0.00041 30.5 5.5 41 92-133 21-61 (264)
272 PRK03669 mannosyl-3-phosphogly 60.1 18 0.0004 30.9 5.0 38 94-132 27-64 (271)
273 PF02358 Trehalose_PPase: Treh 59.2 7.2 0.00016 32.6 2.2 38 149-186 165-205 (235)
274 PF05690 ThiG: Thiazole biosyn 57.6 1.2E+02 0.0025 25.6 10.5 94 90-193 103-205 (247)
275 PF04413 Glycos_transf_N: 3-De 56.4 76 0.0016 25.5 7.6 87 95-193 36-126 (186)
276 cd04728 ThiG Thiazole synthase 52.8 1.4E+02 0.0031 25.2 10.0 97 90-196 103-208 (248)
277 TIGR01484 HAD-SF-IIB HAD-super 52.1 27 0.00059 28.2 4.5 34 92-125 18-51 (204)
278 TIGR02329 propionate_PrpR prop 51.5 1E+02 0.0022 29.4 8.7 88 95-194 85-172 (526)
279 PRK11840 bifunctional sulfur c 50.5 1.8E+02 0.0039 25.7 11.3 96 90-195 177-281 (326)
280 cd02071 MM_CoA_mut_B12_BD meth 50.3 1E+02 0.0022 22.7 9.2 86 99-189 19-106 (122)
281 PF04413 Glycos_transf_N: 3-De 49.6 74 0.0016 25.6 6.5 98 70-179 81-185 (186)
282 KOG3040 Predicted sugar phosph 49.3 32 0.00069 28.2 4.2 41 91-131 23-65 (262)
283 PF06506 PrpR_N: Propionate ca 48.3 40 0.00087 26.7 4.8 84 96-194 66-152 (176)
284 COG1964 Predicted Fe-S oxidore 48.2 96 0.0021 28.7 7.4 60 88-153 119-184 (475)
285 PRK01713 ornithine carbamoyltr 47.9 2E+02 0.0044 25.6 10.5 93 94-194 89-190 (334)
286 TIGR02370 pyl_corrinoid methyl 46.1 1.6E+02 0.0035 23.8 8.9 86 99-189 104-190 (197)
287 TIGR01485 SPP_plant-cyano sucr 45.9 51 0.0011 27.7 5.4 38 94-132 24-61 (249)
288 PRK02261 methylaspartate mutas 44.1 1.4E+02 0.003 22.6 10.2 86 100-190 24-117 (137)
289 KOG0203 Na+/K+ ATPase, alpha s 41.7 24 0.00051 35.2 2.8 97 91-190 590-730 (1019)
290 COG2897 SseA Rhodanese-related 40.8 34 0.00074 29.6 3.5 47 145-191 69-121 (285)
291 KOG1618 Predicted phosphatase 40.6 1.1E+02 0.0024 27.0 6.3 90 88-190 48-144 (389)
292 CHL00162 thiG thiamin biosynth 39.6 2.4E+02 0.0052 24.1 10.4 96 90-195 117-221 (267)
293 cd06537 CIDE_N_B CIDE_N domain 39.4 28 0.0006 23.7 2.1 18 10-27 40-57 (81)
294 PF01993 MTD: methylene-5,6,7, 39.1 1.2E+02 0.0026 25.5 6.1 45 146-193 70-116 (276)
295 PRK15424 propionate catabolism 39.0 1.9E+02 0.0042 27.7 8.5 87 95-193 95-181 (538)
296 smart00266 CAD Domains present 38.5 29 0.00063 23.2 2.1 19 9-27 38-56 (74)
297 cd06539 CIDE_N_A CIDE_N domain 38.2 30 0.00065 23.4 2.1 19 9-27 40-58 (78)
298 COG1212 KdsB CMP-2-keto-3-deox 38.1 2.4E+02 0.0052 23.6 8.8 73 94-175 29-103 (247)
299 PRK15317 alkyl hydroperoxide r 38.0 2.3E+02 0.0049 26.9 8.9 29 165-193 211-242 (517)
300 PRK00208 thiG thiazole synthas 37.7 2.5E+02 0.0055 23.8 10.1 97 90-196 103-208 (250)
301 TIGR03140 AhpF alkyl hydropero 37.7 2.3E+02 0.0051 26.8 8.9 67 127-193 164-243 (515)
302 PF04007 DUF354: Protein of un 36.0 1.9E+02 0.0042 25.8 7.5 91 96-193 16-111 (335)
303 TIGR00236 wecB UDP-N-acetylglu 35.7 2.6E+02 0.0057 24.8 8.7 95 96-193 16-118 (365)
304 PF02358 Trehalose_PPase: Treh 35.4 41 0.00088 28.0 3.1 11 13-23 1-11 (235)
305 PRK12562 ornithine carbamoyltr 35.1 3.3E+02 0.0071 24.3 10.5 94 93-194 87-190 (334)
306 cd01615 CIDE_N CIDE_N domain, 34.8 36 0.00077 23.1 2.1 18 10-27 41-58 (78)
307 COG0078 ArgF Ornithine carbamo 34.2 3.2E+02 0.007 24.0 9.7 81 108-193 100-185 (310)
308 PRK00856 pyrB aspartate carbam 34.1 3.2E+02 0.007 23.9 10.8 94 94-193 88-190 (305)
309 COG2022 ThiG Uncharacterized e 34.1 2.9E+02 0.0062 23.3 9.4 96 89-194 109-213 (262)
310 PLN02887 hydrolase family prot 34.1 1.1E+02 0.0023 29.7 5.9 41 91-132 325-365 (580)
311 PF03332 PMM: Eukaryotic phosp 33.9 68 0.0015 26.6 4.0 45 96-142 1-45 (220)
312 PRK14502 bifunctional mannosyl 33.3 86 0.0019 30.8 5.2 38 94-132 436-473 (694)
313 cd06536 CIDE_N_ICAD CIDE_N dom 32.9 40 0.00087 23.0 2.1 18 10-27 43-60 (80)
314 PF00875 DNA_photolyase: DNA p 32.2 74 0.0016 24.7 4.0 46 95-145 54-99 (165)
315 PRK07143 hypothetical protein; 32.0 2.7E+02 0.0058 24.1 7.5 58 95-158 66-134 (279)
316 PRK14805 ornithine carbamoyltr 31.3 3.6E+02 0.0078 23.6 10.5 93 94-194 81-180 (302)
317 TIGR02826 RNR_activ_nrdG3 anae 31.2 1.6E+02 0.0034 22.7 5.5 27 92-118 73-99 (147)
318 cd06538 CIDE_N_FSP27 CIDE_N do 30.3 47 0.001 22.6 2.1 18 10-27 40-57 (79)
319 KOG2832 TFIIF-interacting CTD 30.0 2.1E+02 0.0044 25.8 6.5 80 91-175 214-293 (393)
320 PF14336 DUF4392: Domain of un 29.7 3.5E+02 0.0076 23.5 8.0 26 94-119 63-88 (291)
321 COG3536 Uncharacterized protei 29.5 40 0.00087 24.3 1.7 38 244-287 43-80 (120)
322 PRK10076 pyruvate formate lyas 29.4 3.2E+02 0.007 22.5 7.8 30 89-118 48-78 (213)
323 PRK03515 ornithine carbamoyltr 28.8 4.2E+02 0.0092 23.6 10.3 93 94-194 88-190 (336)
324 PF14213 DUF4325: Domain of un 28.8 1.2E+02 0.0025 20.1 3.9 30 10-39 18-47 (74)
325 PF04123 DUF373: Domain of unk 28.7 2.2E+02 0.0047 25.5 6.5 74 95-193 52-129 (344)
326 KOG2469 IMP-GMP specific 5'-nu 27.7 71 0.0015 29.0 3.3 18 6-23 24-41 (424)
327 TIGR01518 g3p_cytidyltrns glyc 27.7 2.2E+02 0.0049 20.8 5.7 10 184-193 103-112 (125)
328 PRK02255 putrescine carbamoylt 27.5 4.5E+02 0.0097 23.5 10.3 93 94-194 85-187 (338)
329 PRK04284 ornithine carbamoyltr 27.4 4.5E+02 0.0097 23.4 10.5 93 94-194 88-189 (332)
330 COG1171 IlvA Threonine dehydra 27.2 4.6E+02 0.01 23.5 9.8 86 95-194 59-152 (347)
331 PF09551 Spore_II_R: Stage II 27.1 86 0.0019 23.6 3.2 35 254-295 81-118 (130)
332 COG0761 lytB 4-Hydroxy-3-methy 27.0 4.2E+02 0.0092 23.0 7.9 44 149-196 225-268 (294)
333 PRK13762 tRNA-modifying enzyme 26.9 1.1E+02 0.0024 27.0 4.5 31 88-118 139-169 (322)
334 TIGR02765 crypto_DASH cryptoch 26.8 1.1E+02 0.0024 28.2 4.7 47 94-145 61-107 (429)
335 KOG0541 Alkyl hydroperoxide re 26.5 1.8E+02 0.0038 22.8 4.8 41 93-133 64-104 (171)
336 PF02606 LpxK: Tetraacyldisacc 26.0 1.3E+02 0.0029 26.6 4.8 27 93-119 51-77 (326)
337 COG4951 Uncharacterized protei 26.0 47 0.001 28.2 1.8 58 136-193 127-194 (361)
338 TIGR01858 tag_bisphos_ald clas 25.8 4.4E+02 0.0096 22.8 9.5 92 96-193 4-103 (282)
339 TIGR02471 sucr_syn_bact_C sucr 25.6 1.6E+02 0.0034 24.4 5.1 33 98-132 22-54 (236)
340 PRK02102 ornithine carbamoyltr 25.2 4.9E+02 0.011 23.2 11.0 93 93-193 88-188 (331)
341 cd01445 TST_Repeats Thiosulfat 25.1 1.4E+02 0.0031 22.5 4.3 29 146-174 75-103 (138)
342 COG3769 Predicted hydrolase (H 24.8 1.2E+02 0.0026 25.3 3.9 36 96-132 28-63 (274)
343 TIGR03556 photolyase_8HDF deox 24.7 1.4E+02 0.0031 27.9 5.1 47 94-145 55-101 (471)
344 TIGR02837 spore_II_R stage II 24.7 1.1E+02 0.0024 24.2 3.5 35 254-295 116-153 (168)
345 PF12897 Aminotran_MocR: Alani 24.7 2.8E+02 0.006 25.4 6.4 83 95-177 12-98 (425)
346 PRK00779 ornithine carbamoyltr 24.6 4.8E+02 0.01 22.9 10.7 93 94-194 86-185 (304)
347 COG5190 FCP1 TFIIF-interacting 24.6 2E+02 0.0042 26.3 5.6 84 90-178 251-334 (390)
348 TIGR01624 LRP1_Cterm LRP1 C-te 24.4 1.2E+02 0.0027 18.3 2.9 9 290-298 30-38 (50)
349 PF08381 BRX: Transcription fa 23.9 81 0.0018 20.1 2.2 14 275-288 12-25 (59)
350 PF02698 DUF218: DUF218 domain 23.8 2.9E+02 0.0063 20.9 6.0 58 136-193 40-106 (155)
351 PF04358 DsrC: DsrC like prote 23.8 2.9E+02 0.0063 20.1 7.2 38 10-47 7-44 (109)
352 PRK01372 ddl D-alanine--D-alan 23.8 2.6E+02 0.0057 24.1 6.3 44 150-193 98-141 (304)
353 cd06831 PLPDE_III_ODC_like_AZI 23.6 2.9E+02 0.0064 25.2 6.7 10 275-284 255-264 (394)
354 PRK07084 fructose-bisphosphate 23.5 4.5E+02 0.0099 23.3 7.5 95 95-193 11-116 (321)
355 PF02593 dTMP_synthase: Thymid 23.2 2E+02 0.0044 23.8 5.0 75 90-169 58-138 (217)
356 PF02017 CIDE-N: CIDE-N domain 23.0 64 0.0014 21.9 1.7 18 10-27 41-58 (78)
357 PF03603 DNA_III_psi: DNA poly 22.9 1.7E+02 0.0036 22.0 4.1 66 101-172 7-72 (128)
358 COG0019 LysA Diaminopimelate d 22.7 4.5E+02 0.0099 24.0 7.7 44 257-304 270-319 (394)
359 TIGR01501 MthylAspMutase methy 22.6 3.5E+02 0.0075 20.5 8.9 85 99-190 21-115 (134)
360 PRK14804 ornithine carbamoyltr 22.6 5.3E+02 0.012 22.7 10.7 92 95-194 86-186 (311)
361 TIGR00640 acid_CoA_mut_C methy 22.5 3.4E+02 0.0073 20.4 7.4 12 177-188 97-108 (132)
362 TIGR00877 purD phosphoribosyla 22.5 4.8E+02 0.01 23.8 8.1 94 95-193 52-148 (423)
363 PF06437 ISN1: IMP-specific 5' 22.0 1.1E+02 0.0025 27.6 3.5 16 8-23 146-161 (408)
364 PF10113 Fibrillarin_2: Fibril 21.9 2.1E+02 0.0046 26.3 5.2 44 151-194 208-255 (505)
365 cd00947 TBP_aldolase_IIB Tagat 21.4 5.4E+02 0.012 22.3 9.0 91 97-193 2-100 (276)
366 PLN03017 trehalose-phosphatase 21.3 1.5E+02 0.0033 26.8 4.2 36 149-184 283-321 (366)
367 TIGR00167 cbbA ketose-bisphosp 21.1 5.6E+02 0.012 22.3 10.2 95 95-193 5-108 (288)
368 PF05673 DUF815: Protein of un 21.1 3.9E+02 0.0085 22.7 6.4 22 96-117 69-90 (249)
369 PF08013 Tagatose_6_P_K: Tagat 21.1 3.3E+02 0.0072 25.1 6.3 96 96-194 4-129 (424)
370 TIGR03365 Bsubt_queE 7-cyano-7 21.0 1E+02 0.0022 25.9 3.0 31 89-119 82-112 (238)
371 TIGR01369 CPSaseII_lrg carbamo 20.9 9.6E+02 0.021 25.3 10.5 92 97-193 30-170 (1050)
372 COG0191 Fba Fructose/tagatose 20.9 5.6E+02 0.012 22.3 9.8 93 95-193 5-106 (286)
373 PF08889 WbqC: WbqC-like prote 20.2 5E+02 0.011 21.4 8.2 111 77-193 74-185 (219)
374 PRK14021 bifunctional shikimat 20.1 7.8E+02 0.017 23.6 10.2 35 159-193 263-303 (542)
No 1
>PLN02940 riboflavin kinase
Probab=100.00 E-value=6.6e-62 Score=434.36 Aligned_cols=313 Identities=79% Similarity=1.286 Sum_probs=274.0
Q ss_pred CCcc--cccCccEEEEecCCccccChHHHHHHHHHHHHHcCCCCChhhhhhhcCCCHHHHHHHHHHHhCCCCCHHHHHHH
Q 021360 1 MAQP--LKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNE 78 (313)
Q Consensus 1 M~~~--~~~~~k~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (313)
|+.+ ....+++|+||+||||+|+...+..++..+++++|...+.+......|....+.+..++..++.+...+++...
T Consensus 1 ~~~~~~~~~~ik~VIFDlDGTLvDt~~~~~~a~~~~~~~~G~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (382)
T PLN02940 1 MSAAKPLKKLVSHVILDLDGTLLNTDGIVSDVLKAFLVKYGKQWDGREAQKIVGKTPLEAAATVVEDYGLPCSTDEFNSE 80 (382)
T ss_pred CCCCccccccCCEEEECCcCcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 5543 23468999999999999999999999999999999888877778888888888888888888887777777777
Q ss_pred HHHHHHhhhccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHH
Q 021360 79 VYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAA 158 (313)
Q Consensus 79 ~~~~~~~~~~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~ 158 (313)
+.+.+...+....++||+.++|+.|++.|++++++||++...+...+.++.++..+|+.+++++++...||+|+.+..++
T Consensus 81 ~~~~~~~~~~~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~ 160 (382)
T PLN02940 81 ITPLLSEQWCNIKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAA 160 (382)
T ss_pred HHHHHHHHHccCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHH
Confidence 77777666677889999999999999999999999999999888777447899999999999999999999999999999
Q ss_pred HHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCccccccccceeeccccccCccccCCCCccccccCCCCCCccc
Q 021360 159 KRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWY 238 (313)
Q Consensus 159 ~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~~l~e~~~~~~~~~~~~~~~a~~~lg~p~~ 238 (313)
++++++|++|++|||+..|+.+|+++|+.++++..+.........++.++.++.++....+++|++++|+.+.+|+|||.
T Consensus 161 ~~lgv~p~~~l~VGDs~~Di~aA~~aGi~~I~v~~g~~~~~~~~~ad~~i~sl~el~~~~~~~~~~~~~~~~~~~~~~y~ 240 (382)
T PLN02940 161 KRLNVEPSNCLVIEDSLPGVMAGKAAGMEVIAVPSIPKQTHLYSSADEVINSLLDLQPEKWGLPPFNDWIEGTLPIEPWH 240 (382)
T ss_pred HHcCCChhHEEEEeCCHHHHHHHHHcCCEEEEECCCCcchhhccCccEEeCCHhHcCHHHcCCCCccccccCcCCcCCEE
Confidence 99999999999999999999999999999999987543332334688999999999888899999999999999999999
Q ss_pred cccceeeeecCCCcccCccccccCCCccccccCCCCCeEEEEEEEecCCceeEEEEEecCCccccCCcceEeecC
Q 021360 239 IGGPVVKGLGRGSKVLGIPTANLSTEGYSDVLSEHPSGVYFGWAGLSTRGVYKMVMSIGWNPYFDNAEKTIVSLT 313 (313)
Q Consensus 239 ~~g~v~~g~~~g~~~lg~ptan~~~~~~~~~~p~~~~gvy~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~e~~~ 313 (313)
++|+|+||+++||++||||||||.+++..+++|.++.||||+|+.+.++.+|+||+|||+||||++.+.+||+||
T Consensus 241 ~~G~Vv~G~~~G~~~lg~PTaNl~~~~~~~~~~~p~~GVY~~~~~~~~~~~~~~v~niG~~Pt~~~~~~~~E~~i 315 (382)
T PLN02940 241 IGGPVIKGFGRGSKVLGIPTANLSTENYSDVLSEHPSGVYFGWAGLSTRGVYKMVMSIGWNPYFNNTEKTIEPWL 315 (382)
T ss_pred EEEEEEeCCccCcccCCCCcccCCcchhhhhcCCCCCEEEEEEEEECCCceEEEEEEecCCCccCCCccEEEEEE
Confidence 999999999999997799999999876423564226899999999843358999999999999987677899996
No 2
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=100.00 E-value=9.1e-34 Score=241.16 Aligned_cols=174 Identities=21% Similarity=0.204 Sum_probs=144.9
Q ss_pred HHHHHHHHHHCCCCEEEE--------eCCchHHHHHHHHhhcCCccccceEEecCCCC---CCCCChHHHHHHHHHcCCC
Q 021360 96 ANRLIKHLSCHGVPMALA--------SNSHRATIESKISYQHGWNESFSVIVGSDEVR---TGKPSPDIFLEAAKRLNME 164 (313)
Q Consensus 96 v~e~l~~l~~~g~~~~i~--------s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~---~~kp~~~~~~~~~~~~~~~ 164 (313)
..+-++.+.+.|+...++ ..++++|++..+.+.+++ ..+++|+|+. .++++.+.+++.++++|+.
T Consensus 56 ~~~k~~~l~~~Gvd~~~~~~F~~~~a~ls~e~Fi~~~l~~~l~~----~~ivvG~Df~FG~~~~G~~~~L~~~~~~~g~~ 131 (288)
T TIGR00083 56 LEDKARQLQIKGVEQLLVVVFDEEFANLSALQFIDQLIVKHLHV----KFLVVGDDFRFGHDRQGDFLLLQLFGNTTIFC 131 (288)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCHHHHcCCHHHHHHHHHHhccCC----cEEEECCCccCCCCCCCCHHHHHHhccccCcE
Confidence 456677788888776553 356778888777566777 8899999987 5567888899888887776
Q ss_pred CCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCccccccccceeeccccccCccccCCCCccccccCCCCCCcccccccee
Q 021360 165 PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIGGPVV 244 (313)
Q Consensus 165 ~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~~l~e~~~~~~~~~~~~~~~a~~~lg~p~~~~g~v~ 244 (313)
+..++... .. ...||+.+++.|.+|+++. |+.+|||||.++|+|+
T Consensus 132 -----------------------v~~~~~~~-~~-~~ISST~IR~~l~~G~i~~----------A~~lLGr~y~i~G~Vv 176 (288)
T TIGR00083 132 -----------------------VIVKQLFC-QD-IRISSSAIRQALKNGDLEL----------ANKLLGRPYFICGTVI 176 (288)
T ss_pred -----------------------EEEecccc-CC-CeECHHHHHHHHHcCCHHH----------HHHhhhhhhccceEEE
Confidence 55555533 33 4568889999999999999 9999999999999999
Q ss_pred eeecCCCcccCccccccCCCccccccCCCCCeEEEEEEEecCCceeEEEEEecCCccccCCcceEeecC
Q 021360 245 KGLGRGSKVLGIPTANLSTEGYSDVLSEHPSGVYFGWAGLSTRGVYKMVMSIGWNPYFDNAEKTIVSLT 313 (313)
Q Consensus 245 ~g~~~g~~~lg~ptan~~~~~~~~~~p~~~~gvy~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~e~~~ 313 (313)
||+++||+ ||||||||.+++. +++| +.|||++++.+ ++..|+||+|||+||||++.+.++|+||
T Consensus 177 ~G~~~Gr~-lGfPTaNl~~~~~-~~~p--~~GVYa~~v~i-~~~~y~~v~niG~~PT~~~~~~~~E~~i 240 (288)
T TIGR00083 177 HGQKLGRT-LGFPTANIKLKNQ-VLPL--KGGYYVVVVLL-NGEPYPGVGNIGNRPTFIGQQLVIEVHL 240 (288)
T ss_pred ecCCCccc-ccCceEEecCccc-ccCC--CcceEEEEEEe-CCeEEEEEEEeCCCCccCCCceEEEEEe
Confidence 99999999 9999999999875 6788 79999999998 7788999999999999987667899997
No 3
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=99.98 E-value=3.5e-32 Score=233.86 Aligned_cols=174 Identities=26% Similarity=0.300 Sum_probs=143.3
Q ss_pred HHHHHHHHHHCCCCEEEE--------eCCchHHHHHHHHhhcCCccccceEEecCCCC---CCCCChHHHHHHHHHcCCC
Q 021360 96 ANRLIKHLSCHGVPMALA--------SNSHRATIESKISYQHGWNESFSVIVGSDEVR---TGKPSPDIFLEAAKRLNME 164 (313)
Q Consensus 96 v~e~l~~l~~~g~~~~i~--------s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~---~~kp~~~~~~~~~~~~~~~ 164 (313)
..+-+..+++.|+...++ ..+++++++.++.+.+++ +.+++|+|+. .++++.+.+++.++.+|++
T Consensus 72 ~eeR~~~l~~~gVD~~~~~~F~~~~~~ls~e~Fi~~~l~~~l~~----~~iVvG~Df~FG~~~~G~~~~L~~~~~~~g~~ 147 (305)
T PRK05627 72 LRDKAELLAELGVDYVLVLPFDEEFAKLSAEEFIEDLLVKGLNA----KHVVVGFDFRFGKKRAGDFELLKEAGKEFGFE 147 (305)
T ss_pred HHHHHHHHHHcCCCEEEEecCCHHHhcCCHHHHHHHHHHhccCC----CEEEECCCCCCCCCCCCCHHHHHHHHHHcCcE
Confidence 456677777778776664 336778888766566777 8899999986 4557788888888888887
Q ss_pred CCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCccccccccceeeccccccCccccCCCCccccccCCCCCCcccccccee
Q 021360 165 PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIGGPVV 244 (313)
Q Consensus 165 ~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~~l~e~~~~~~~~~~~~~~~a~~~lg~p~~~~g~v~ 244 (313)
++.++.. .......+|+.+++.+.+|++.. |+.+|||||.++|+|+
T Consensus 148 -----------------------v~~v~~~-~~~~~~ISST~IR~~I~~G~i~~----------A~~lLg~~y~~~g~V~ 193 (305)
T PRK05627 148 -----------------------VTIVPEV-KEDGERVSSTAIRQALAEGDLEL----------ANKLLGRPYSISGRVV 193 (305)
T ss_pred -----------------------EEEeccE-ecCCCcCchHHHHHHHHcCCHHH----------HHhhhcCCCceEEEEE
Confidence 5555553 23334568889999999999999 9999999999999999
Q ss_pred eeecCCCcccCccccccCCCccccccCCCCCeEEEEEEEecCCceeEEEEEecCCccccCCcceEeecC
Q 021360 245 KGLGRGSKVLGIPTANLSTEGYSDVLSEHPSGVYFGWAGLSTRGVYKMVMSIGWNPYFDNAEKTIVSLT 313 (313)
Q Consensus 245 ~g~~~g~~~lg~ptan~~~~~~~~~~p~~~~gvy~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~e~~~ 313 (313)
||+++||+ ||||||||.+++. .+| +.|||++|+.+ ++..|+||+|||+||||++++.++|+||
T Consensus 194 ~G~~~Gr~-lgfPTaNl~~~~~--~~p--~~GVY~~~~~i-~~~~y~~~~~iG~~ptf~~~~~~~E~~i 256 (305)
T PRK05627 194 HGQKLGRT-LGFPTANLPLPDR--VLP--ADGVYAVRVKV-DGKPYPGVANIGTRPTVDGGRQLLEVHL 256 (305)
T ss_pred ECcccCcc-ccceeEeecCccC--CCC--CceEEEEEEEE-CCEEEEEEEEecCCCccCCCceEEEEEe
Confidence 99999999 9999999999884 448 79999999998 7788999999999999987677899996
No 4
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.97 E-value=1.1e-28 Score=206.49 Aligned_cols=208 Identities=22% Similarity=0.386 Sum_probs=170.3
Q ss_pred cCccEEEEecCCccccChHHHHHHHHHHHHHcCCCCCh-hhhhhhcCCCHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Q 021360 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDG-REKHKIVGKTPLEEAAIIVEDYGL-PCAKHEFVNEVYSMFS 84 (313)
Q Consensus 7 ~~~k~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 84 (313)
.++++|+||+||||+|+...+..++.++++++|...+. .......|.........+....+. ......+...+.+.+.
T Consensus 5 ~~~k~iiFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (222)
T PRK10826 5 RQILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRREELPDTLGLRIDQVVDLWYARQPWNGPSRQEVVQRIIARVI 84 (222)
T ss_pred ccCcEEEEcCCCCCCcCHHHHHHHHHHHHHHCCCCCCHHHHHHHhhCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999987765 455666677666655555554443 2234444455544444
Q ss_pred hhh-ccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCC
Q 021360 85 DHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM 163 (313)
Q Consensus 85 ~~~-~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~ 163 (313)
... ....++||+.++|+.|++.|++++++|++....++..+ +++++..+|+.+++++++..+||+|+.++.+++++|+
T Consensus 85 ~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l-~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~ 163 (222)
T PRK10826 85 SLIEETRPLLPGVREALALCKAQGLKIGLASASPLHMLEAVL-TMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKLGV 163 (222)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH-HhCcchhcccEEEEcccCCCCCCCHHHHHHHHHHcCC
Confidence 332 45789999999999999999999999999999888888 8899999999999999999999999999999999999
Q ss_pred CCCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCccc-cccccceeeccccccC
Q 021360 164 EPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTH-RYTAADEVINSLLDLR 215 (313)
Q Consensus 164 ~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~-~~~~s~~ii~~l~e~~ 215 (313)
+|++|++|||+.+|+.+|+++|++++++..+....+ ....++.++.++.++.
T Consensus 164 ~~~~~~~igDs~~Di~aA~~aG~~~i~v~~~~~~~~~~~~~~~~~~~~~~dl~ 216 (222)
T PRK10826 164 DPLTCVALEDSFNGMIAAKAARMRSIVVPAPEQQNDPRWALADVKLESLTELT 216 (222)
T ss_pred CHHHeEEEcCChhhHHHHHHcCCEEEEecCCccCchhhhhhhheeccCHHHHh
Confidence 999999999999999999999999999988543322 2335788888888863
No 5
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.97 E-value=4.9e-29 Score=207.28 Aligned_cols=186 Identities=34% Similarity=0.524 Sum_probs=162.9
Q ss_pred CccEEEEecCCccccChHHHHHHHHHHHHHcCCCCChhhhhhhcCCCHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHh
Q 021360 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPC--AKHEFVNEVYSMFSD 85 (313)
Q Consensus 8 ~~k~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 85 (313)
++++|+|||||||+||+..+.++|.++++++|...+.+......|.........+.+...... +..............
T Consensus 1 ~~~avIFD~DGvLvDse~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (221)
T COG0637 1 MIKAVIFDMDGTLVDSEPLHARAWLEALKEYGIEISDEEIRELHGGGIARIIDLLRKLAAGEDPADLAELERLLYEAEAL 80 (221)
T ss_pred CCcEEEEcCCCCcCcchHHHHHHHHHHHHHcCCCCCHHHHHHHHCCChHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHh
Confidence 478999999999999999999999999999999999888877788777777777777665542 233333334444444
Q ss_pred hhccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCC
Q 021360 86 HLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 165 (313)
Q Consensus 86 ~~~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~ 165 (313)
......+.||+.++|+.|+++|++++++|++++..+...+ ...|+.++|+.+++++++..+||+|+.|..+++++|++|
T Consensus 81 ~~~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L-~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P 159 (221)
T COG0637 81 ELEGLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVL-ARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDP 159 (221)
T ss_pred hhcCCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHH-HHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCCh
Confidence 5567899999999999999999999999999999998888 889999999999999999999999999999999999999
Q ss_pred CcEEEEecCHhhHHHHHHcCCeEEEeCCC
Q 021360 166 SSSLVIEDSVIGVVAGKAAGMEVVAVPSL 194 (313)
Q Consensus 166 ~~~i~vgD~~~Di~~a~~~G~~~i~v~~~ 194 (313)
++|++|+|+.+++.+|+++||.++.+...
T Consensus 160 ~~CvviEDs~~Gi~Aa~aAGm~vv~v~~~ 188 (221)
T COG0637 160 EECVVVEDSPAGIQAAKAAGMRVVGVPAG 188 (221)
T ss_pred HHeEEEecchhHHHHHHHCCCEEEEecCC
Confidence 99999999999999999999999999873
No 6
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=99.97 E-value=2.5e-30 Score=219.35 Aligned_cols=172 Identities=26% Similarity=0.368 Sum_probs=140.7
Q ss_pred HHHHHHHHHHCCCCEEE--------EeCCchHHHHHHHHhhcCCccccceEEecCCCC---CCCCChHHHHHHHHHcCCC
Q 021360 96 ANRLIKHLSCHGVPMAL--------ASNSHRATIESKISYQHGWNESFSVIVGSDEVR---TGKPSPDIFLEAAKRLNME 164 (313)
Q Consensus 96 v~e~l~~l~~~g~~~~i--------~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~---~~kp~~~~~~~~~~~~~~~ 164 (313)
..+-++.|...|+...+ .+.++.+|+. .+.+.++. +.+++++|+. .++++.+.++...++ |+.
T Consensus 74 ~~~k~~~l~~~gvd~~~v~~F~~~fa~ls~~~Fv~-~lv~~l~~----k~ivvG~DF~FGk~~~g~~~~L~~~~~~-gf~ 147 (304)
T COG0196 74 LREKIRLLAGYGVDALVVLDFDLEFANLSAEEFVE-LLVEKLNV----KHIVVGFDFRFGKGRQGNAELLRELGQK-GFE 147 (304)
T ss_pred HHHHHHHHHhcCCcEEEEEeCCHhHhhCCHHHHHH-HHHhccCC----cEEEEecccccCCCCCCCHHHHHHhccC-Cce
Confidence 45667778888865554 3566788888 44477877 8899998887 445566777777766 777
Q ss_pred CCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCccccccccceeeccccccCccccCCCCccccccCCCCCCcccccccee
Q 021360 165 PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIGGPVV 244 (313)
Q Consensus 165 ~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~~l~e~~~~~~~~~~~~~~~a~~~lg~p~~~~g~v~ 244 (313)
++.++... .+....+|+.+++.|.+++.+. |+.+||+||.++|+|+
T Consensus 148 -----------------------v~~v~~~~-~~~~~iSSt~IR~~L~~gdl~~----------A~~lLG~py~i~G~Vv 193 (304)
T COG0196 148 -----------------------VTIVPKIN-EEGIRISSTAIRQALREGDLEE----------ANKLLGRPYSIEGKVV 193 (304)
T ss_pred -----------------------EEEeccEe-cCCcEEchHHHHHHHhcCCHHH----------HHHhcCCCeEEEEEEE
Confidence 66666643 3334568899999999999999 9999999999999999
Q ss_pred eeecCCCcccCccccccCCCccccccCCCCCeEEEEEEEecCCceeEEEEEecCCccccCCcceEeecC
Q 021360 245 KGLGRGSKVLGIPTANLSTEGYSDVLSEHPSGVYFGWAGLSTRGVYKMVMSIGWNPYFDNAEKTIVSLT 313 (313)
Q Consensus 245 ~g~~~g~~~lg~ptan~~~~~~~~~~p~~~~gvy~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~e~~~ 313 (313)
||+++||+ +||||||+.++. ..+| +.||||+++.+ +++.|+||+|||+||||++.++++|+||
T Consensus 194 ~G~~~Gr~-lGfPTaNi~~~~--~~~~--~~GVYav~v~~-~~~~~~gv~~vG~rpt~~~~~~~lEvhi 256 (304)
T COG0196 194 HGQKLGRT-LGFPTANIYLKD--NVLP--AFGVYAVRVKL-DGGVYPGVANVGYRPTVDGSERSLEVHI 256 (304)
T ss_pred cccccccc-cCCCcccccccc--cccc--CCeeEEEEEEE-CCccccceEEecccccccCCeeEEEEEE
Confidence 99999999 999999999988 6777 68999999999 5555999999999999988789999996
No 7
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.97 E-value=1.6e-28 Score=208.44 Aligned_cols=206 Identities=26% Similarity=0.352 Sum_probs=162.7
Q ss_pred cCccEEEEecCCccccChHHHHHHHHHHHHHcCC----CCChhhh-hhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 021360 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGK----EWDGREK-HKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYS 81 (313)
Q Consensus 7 ~~~k~vifDlDGTL~d~~~~~~~~~~~~~~~~g~----~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (313)
.++++|+|||||||+|+...+..++.++++++|. +.+.+.. ....|......+..++.. ... ...++......
T Consensus 20 ~~~k~viFDlDGTLiDs~~~~~~a~~~~~~~~g~~~g~~~~~~~~~~~~~G~~~~~~~~~~~~~-~~~-~~~~~~~~~~~ 97 (248)
T PLN02770 20 APLEAVLFDVDGTLCDSDPLHYYAFREMLQEINFNGGVPITEEFFVENIAGKHNEDIALGLFPD-DLE-RGLKFTDDKEA 97 (248)
T ss_pred CccCEEEEcCCCccCcCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHcCCCCHHHHHHHHcCc-chh-hHHHHHHHHHH
Confidence 4689999999999999999999999999999864 3444433 345676666555444321 111 11122233344
Q ss_pred HHHhhh-ccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHH
Q 021360 82 MFSDHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKR 160 (313)
Q Consensus 82 ~~~~~~-~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~ 160 (313)
.+.... ....++||+.++|+.|++.|++++++||++...++..+ +++++..+|+.+++++++...||+|+.|..++++
T Consensus 98 ~y~~~~~~~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l-~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~ 176 (248)
T PLN02770 98 LFRKLASEQLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMI-SLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEV 176 (248)
T ss_pred HHHHHHHhcCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHH-HHcCChhhCcEEEecCcCCCCCCChHHHHHHHHH
Confidence 444333 35789999999999999999999999999999999888 8899999999999999999999999999999999
Q ss_pred cCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCcccc-ccccceeeccccccC
Q 021360 161 LNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR-YTAADEVINSLLDLR 215 (313)
Q Consensus 161 ~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~-~~~s~~ii~~l~e~~ 215 (313)
++++|++|++|||+..|+.+|+++|++++++.++...... ...++.++.++.+..
T Consensus 177 ~~~~~~~~l~vgDs~~Di~aA~~aGi~~i~v~~g~~~~~l~~~~a~~vi~~~~e~~ 232 (248)
T PLN02770 177 LKVSKDHTFVFEDSVSGIKAGVAAGMPVVGLTTRNPESLLMEAKPTFLIKDYEDPK 232 (248)
T ss_pred hCCChhHEEEEcCCHHHHHHHHHCCCEEEEEeCCCCHHHHhhcCCCEEeccchhhH
Confidence 9999999999999999999999999999999875432222 236888999998743
No 8
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.96 E-value=1.6e-28 Score=208.62 Aligned_cols=207 Identities=23% Similarity=0.308 Sum_probs=163.1
Q ss_pred cCccEEEEecCCccccCh-HHHHHHHHHHHHHcCCCCChhhh-hhhcCCCHHHHHHHHHHHhCCCC-CHHHHHHHHHHHH
Q 021360 7 KLMSCVILDLDGTLLNTD-GMFSEVLKTFLVKYGKEWDGREK-HKIVGKTPLEEAAIIVEDYGLPC-AKHEFVNEVYSMF 83 (313)
Q Consensus 7 ~~~k~vifDlDGTL~d~~-~~~~~~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 83 (313)
..+|+|+|||||||+||. ..+..+|.++++++|...+.... ....|.+....+..++.. .... ....+.......+
T Consensus 22 ~~~k~vIFDlDGTLvDS~~~~~~~a~~~~~~~~G~~~~~~e~~~~~~G~~~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~ 100 (260)
T PLN03243 22 CGWLGVVLEWEGVIVEDDSELERKAWRALAEEEGKRPPPAFLLKRAEGMKNEQAISEVLCW-SRDFLQMKRLAIRKEDLY 100 (260)
T ss_pred CCceEEEEeCCCceeCCchHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHhcc-CCCHHHHHHHHHHHHHHH
Confidence 368999999999999995 56778999999999988766544 567788877766665432 1110 1122223333333
Q ss_pred Hhhh-ccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcC
Q 021360 84 SDHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN 162 (313)
Q Consensus 84 ~~~~-~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~ 162 (313)
.... ....++||+.++|+.|++.|++++++||++...+...+ +++++..+|+.+++++++..+||+|+.|..+++++|
T Consensus 101 ~~~~~~~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l-~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~ 179 (260)
T PLN03243 101 EYMQGGLYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAI-EAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLG 179 (260)
T ss_pred HHHHccCcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHH-HHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhC
Confidence 2222 35678999999999999999999999999999998888 889999999999999999999999999999999999
Q ss_pred CCCCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCccccccccceeeccccccCc
Q 021360 163 MEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRP 216 (313)
Q Consensus 163 ~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~~l~e~~~ 216 (313)
++|++|++|||+..|+.+|+++|+.++++.. .........++.++.++.++..
T Consensus 180 ~~p~~~l~IgDs~~Di~aA~~aG~~~i~v~g-~~~~~~l~~ad~vi~~~~el~~ 232 (260)
T PLN03243 180 FIPERCIVFGNSNSSVEAAHDGCMKCVAVAG-KHPVYELSAGDLVVRRLDDLSV 232 (260)
T ss_pred CChHHeEEEcCCHHHHHHHHHcCCEEEEEec-CCchhhhccCCEEeCCHHHHHH
Confidence 9999999999999999999999999999874 3222223357788888877643
No 9
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.96 E-value=3e-28 Score=202.99 Aligned_cols=207 Identities=26% Similarity=0.415 Sum_probs=174.3
Q ss_pred cCccEEEEecCCccccChHHHHHHHHHHHHHcCCC-CChhhhhhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 021360 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD 85 (313)
Q Consensus 7 ~~~k~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (313)
++++.|+||+||||+|+...+..++..++++++.. .+........|......+............. +..+.+.+.+..
T Consensus 2 ~~~~~iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 80 (220)
T COG0546 2 MMIKAILFDLDGTLVDSAEDILRAFNAALAELGLPPLDEEEIRQLIGLGLDELIERLLGEADEEAAA-ELVERLREEFLT 80 (220)
T ss_pred CCCCEEEEeCCCccccChHHHHHHHHHHHHHcCCCCCCHHHHHHHhcCCHHHHHHHHhccccchhHH-HHHHHHHHHHHH
Confidence 57899999999999999999999999999999988 6888888888888887776665544333222 344444444444
Q ss_pred hhcc---CCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcC
Q 021360 86 HLCK---VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN 162 (313)
Q Consensus 86 ~~~~---~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~ 162 (313)
.+.. ..++||+.++|+.|++.|++++++|+.+...++..+ +++|+..+|+.++++++....||+|..+..++++++
T Consensus 81 ~~~~~~~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l-~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~ 159 (220)
T COG0546 81 AYAELLESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILL-KALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLG 159 (220)
T ss_pred HHHhhccCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHH-HHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhC
Confidence 4432 579999999999999999999999999999999888 889999999999998888899999999999999999
Q ss_pred CCCCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCc--cccccccceeeccccccC
Q 021360 163 MEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQ--THRYTAADEVINSLLDLR 215 (313)
Q Consensus 163 ~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~--~~~~~~s~~ii~~l~e~~ 215 (313)
++|++++||||+.+|+.+|+++|+.++.+.++... ......++.++.++.++.
T Consensus 160 ~~~~~~l~VGDs~~Di~aA~~Ag~~~v~v~~g~~~~~~l~~~~~d~vi~~~~el~ 214 (220)
T COG0546 160 LDPEEALMVGDSLNDILAAKAAGVPAVGVTWGYNSREELAQAGADVVIDSLAELL 214 (220)
T ss_pred CChhheEEECCCHHHHHHHHHcCCCEEEEECCCCCCcchhhcCCCEEECCHHHHH
Confidence 99889999999999999999999999999997632 222446899999988764
No 10
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.96 E-value=4.1e-28 Score=197.87 Aligned_cols=185 Identities=28% Similarity=0.454 Sum_probs=159.1
Q ss_pred cccCccEEEEecCCccccChHHHHHHHHHHHHHcCCCCChhhhhhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 021360 5 LKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFS 84 (313)
Q Consensus 5 ~~~~~k~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (313)
|+.++++|+||+||||+|+...+..++.++++++|...+........|....+.+..++..++...+.+.+.......+.
T Consensus 1 ~~~~~~~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (188)
T PRK10725 1 MYDRYAGLIFDMDGTILDTEPTHRKAWREVLGRYGLQFDEQAMVALNGSPTWRIAQAIIELNQADLDPHALAREKTEAVK 80 (188)
T ss_pred CCCcceEEEEcCCCcCccCHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999887777777788888878788888777766555555554444444
Q ss_pred hhh-ccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCC
Q 021360 85 DHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM 163 (313)
Q Consensus 85 ~~~-~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~ 163 (313)
... ....++|+ .++|..|++. ++++++||++...+...+ +++++..+|+.+++++++...||+|+.+..+++++++
T Consensus 81 ~~~~~~~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l-~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~ 157 (188)
T PRK10725 81 SMLLDSVEPLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALL-AHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGV 157 (188)
T ss_pred HHHhccCCCccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHH-HhCCcHhHceEEEehhhccCCCCChHHHHHHHHHcCC
Confidence 332 45678886 5899999876 899999999999998888 8899999999999999999999999999999999999
Q ss_pred CCCcEEEEecCHhhHHHHHHcCCeEEEeC
Q 021360 164 EPSSSLVIEDSVIGVVAGKAAGMEVVAVP 192 (313)
Q Consensus 164 ~~~~~i~vgD~~~Di~~a~~~G~~~i~v~ 192 (313)
+|++|++|||+..|+++|+++|++++.+.
T Consensus 158 ~~~~~l~igDs~~di~aA~~aG~~~i~~~ 186 (188)
T PRK10725 158 QPTQCVVFEDADFGIQAARAAGMDAVDVR 186 (188)
T ss_pred CHHHeEEEeccHhhHHHHHHCCCEEEeec
Confidence 99999999999999999999999999875
No 11
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.96 E-value=2.9e-28 Score=203.71 Aligned_cols=205 Identities=24% Similarity=0.379 Sum_probs=168.4
Q ss_pred ccEEEEecCCccccChHHHHHHHHHHHHHcCCCCChhhhhh-hcCCCHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHhh
Q 021360 9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHK-IVGKTPLEEAAIIVEDYGLPCA-KHEFVNEVYSMFSDH 86 (313)
Q Consensus 9 ~k~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 86 (313)
+|+|+||+||||+|+.+.+..++.++++++|.+.+...... +.|....+.+..++...+.+.. .+.+...+.+.+...
T Consensus 1 ~k~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (220)
T TIGR03351 1 ISLVVLDMAGTTVDEDGLVYRALRQAVTAAGLSPTPEEVQSAWMGQSKIEAIRALLALDGADEAEAQAAFADFEERLAEA 80 (220)
T ss_pred CcEEEEecCCCeeccCchHHHHHHHHHHHcCCCCCHHHHHHhhcCCCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999998877766655 7788888888887776665421 223334444444443
Q ss_pred hc--cCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCc--cccceEEecCCCCCCCCChHHHHHHHHHcC
Q 021360 87 LC--KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN--ESFSVIVGSDEVRTGKPSPDIFLEAAKRLN 162 (313)
Q Consensus 87 ~~--~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~--~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~ 162 (313)
+. ...++||+.++|+.|++.|++++++||+....+...+ +++++. .+|+.++++++....||+|+.+..++++++
T Consensus 81 ~~~~~~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l-~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~ 159 (220)
T TIGR03351 81 YDDGPPVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLL-EKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTG 159 (220)
T ss_pred hcccCCccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHH-HHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcC
Confidence 32 4689999999999999999999999999999999888 788998 999999999999889999999999999999
Q ss_pred CC-CCcEEEEecCHhhHHHHHHcCCeE-EEeCCCCCcccc--ccccceeecccccc
Q 021360 163 ME-PSSSLVIEDSVIGVVAGKAAGMEV-VAVPSLPKQTHR--YTAADEVINSLLDL 214 (313)
Q Consensus 163 ~~-~~~~i~vgD~~~Di~~a~~~G~~~-i~v~~~~~~~~~--~~~s~~ii~~l~e~ 214 (313)
+. |++|++|||+..|+.+|+++|+.+ +++..+...... ...++.++.++.++
T Consensus 160 ~~~~~~~~~igD~~~Di~aa~~aG~~~~i~~~~g~~~~~~~~~~~~~~~i~~~~~l 215 (220)
T TIGR03351 160 VQDVQSVAVAGDTPNDLEAGINAGAGAVVGVLTGAHDAEELSRHPHTHVLDSVADL 215 (220)
T ss_pred CCChhHeEEeCCCHHHHHHHHHCCCCeEEEEecCCCcHHHHhhcCCceeecCHHHH
Confidence 97 799999999999999999999999 888775433221 23577788877664
No 12
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.96 E-value=3.2e-28 Score=202.54 Aligned_cols=201 Identities=23% Similarity=0.362 Sum_probs=162.4
Q ss_pred CccEEEEecCCccccChHHHHHHHHHHHHHcCCC-CChhhhhhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Q 021360 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDH 86 (313)
Q Consensus 8 ~~k~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (313)
++++|+||+||||+|+...+..++.+++++++.. .+.+......|.+..+.+..+ + +...+.+...+...+...
T Consensus 2 ~~~~viFD~DGTL~ds~~~~~~a~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~ 76 (214)
T PRK13288 2 KINTVLFDLDGTLINTNELIISSFLHTLKTYYPNQYKREDVLPFIGPSLHDTFSKI----D-ESKVEEMITTYREFNHEH 76 (214)
T ss_pred CccEEEEeCCCcCccCHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCcCHHHHHHhc----C-HHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999998753 566667777787766554432 1 112233333333333322
Q ss_pred h-ccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCC
Q 021360 87 L-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 165 (313)
Q Consensus 87 ~-~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~ 165 (313)
. ....++||+.++|+.|++.|++++++||+....+...+ +.+|+..+|+.+++++++...||+|+.+.++++++++++
T Consensus 77 ~~~~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l-~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~ 155 (214)
T PRK13288 77 HDELVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGL-KLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAKP 155 (214)
T ss_pred hhhhcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCCH
Confidence 2 35689999999999999999999999999999998888 889999999999999999999999999999999999999
Q ss_pred CcEEEEecCHhhHHHHHHcCCeEEEeCCCCCcccc--ccccceeecccccc
Q 021360 166 SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR--YTAADEVINSLLDL 214 (313)
Q Consensus 166 ~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~--~~~s~~ii~~l~e~ 214 (313)
+++++|||+.+|+.+|+++|++++++.++...... ...++++++++.++
T Consensus 156 ~~~~~iGDs~~Di~aa~~aG~~~i~v~~g~~~~~~l~~~~~~~~i~~~~~l 206 (214)
T PRK13288 156 EEALMVGDNHHDILAGKNAGTKTAGVAWTIKGREYLEQYKPDFMLDKMSDL 206 (214)
T ss_pred HHEEEECCCHHHHHHHHHCCCeEEEEcCCCCCHHHHhhcCcCEEECCHHHH
Confidence 99999999999999999999999999886432221 23577888888765
No 13
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.96 E-value=3e-28 Score=204.46 Aligned_cols=207 Identities=22% Similarity=0.354 Sum_probs=163.8
Q ss_pred ccCccEEEEecCCccccChHHHHHHHHHHHHHcCCC-CChhhhhhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 021360 6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFS 84 (313)
Q Consensus 6 ~~~~k~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (313)
..|+|+|+||+||||+|+...+..+++.+++++|.+ .+.+......|.+............. ....+++...+.+.+.
T Consensus 9 ~~~~k~viFD~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 87 (229)
T PRK13226 9 VRFPRAVLFDLDGTLLDSAPDMLATVNAMLAARGRAPITLAQLRPVVSKGARAMLAVAFPELD-AAARDALIPEFLQRYE 87 (229)
T ss_pred cccCCEEEEcCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhhhHHHHHHHHHhccCC-hHHHHHHHHHHHHHHH
Confidence 457799999999999999999999999999999975 56666666666655444333222111 1112344444555554
Q ss_pred hhh-ccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCC
Q 021360 85 DHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM 163 (313)
Q Consensus 85 ~~~-~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~ 163 (313)
... ....++||+.++|+.|++.|++++++||++...+...+ +++++..+|+.++++++....||+|+.+..+++++|+
T Consensus 88 ~~~~~~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l-~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~ 166 (229)
T PRK13226 88 ALIGTQSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLIL-PQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGV 166 (229)
T ss_pred HhhhhcCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCC
Confidence 433 35789999999999999999999999999988887777 8899999999999998888899999999999999999
Q ss_pred CCCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCccc---cccccceeecccccc
Q 021360 164 EPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTH---RYTAADEVINSLLDL 214 (313)
Q Consensus 164 ~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~---~~~~s~~ii~~l~e~ 214 (313)
+|++|++|||+.+|+.+|+++|++++.+..+..... ....++.+++++.++
T Consensus 167 ~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~i~~~~el 220 (229)
T PRK13226 167 APTDCVYVGDDERDILAARAAGMPSVAALWGYRLHDDDPLAWQADVLVEQPQLL 220 (229)
T ss_pred ChhhEEEeCCCHHHHHHHHHCCCcEEEEeecCCCCCcChhhcCCCeeeCCHHHH
Confidence 999999999999999999999999999987653221 123588888888775
No 14
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.96 E-value=6.4e-28 Score=200.65 Aligned_cols=202 Identities=22% Similarity=0.300 Sum_probs=165.9
Q ss_pred EEEecCCccccChHHHHHHHHHHHHHcCCC-CChhhhhhhcCCCHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHHhhh
Q 021360 12 VILDLDGTLLNTDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKH---EFVNEVYSMFSDHL 87 (313)
Q Consensus 12 vifDlDGTL~d~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 87 (313)
|+||+||||+|+...+..++..+++++|.. .+........|......+..++..++...+.. ++.+.+.+.+....
T Consensus 1 viFD~DGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (213)
T TIGR01449 1 VLFDLDGTLVDSAPDIAAAVNMALAALGLPPATLARVIGFIGNGVPVLMERVLAWAGQEPDAQRVAELRKLFDRHYEEVA 80 (213)
T ss_pred CeecCCCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhcccHHHHHHHHhhccccccChHHHHHHHHHHHHHHHHhc
Confidence 689999999999998899999999999985 56666677778877777777777666554432 23333444444333
Q ss_pred c-cCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCC
Q 021360 88 C-KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS 166 (313)
Q Consensus 88 ~-~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~ 166 (313)
. ...++||+.++|+.|++.|++++++|+++...++..+ +++++..+|+.+++++++...||+|+.+..++++++++|+
T Consensus 81 ~~~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l-~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~ 159 (213)
T TIGR01449 81 GELTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLL-ELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQ 159 (213)
T ss_pred cccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCCChh
Confidence 2 4789999999999999999999999999999888888 8899999999999999998999999999999999999999
Q ss_pred cEEEEecCHhhHHHHHHcCCeEEEeCCCCCcccc--ccccceeecccccc
Q 021360 167 SSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR--YTAADEVINSLLDL 214 (313)
Q Consensus 167 ~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~--~~~s~~ii~~l~e~ 214 (313)
+|++|||+.+|+.+|+++|++++++..+...... ...++.++.++.++
T Consensus 160 ~~~~igDs~~d~~aa~~aG~~~i~v~~g~~~~~~l~~~~a~~~i~~~~~l 209 (213)
T TIGR01449 160 QMVYVGDSRVDIQAARAAGCPSVLLTYGYRYGEAIDLLPPDVLYDSLNEL 209 (213)
T ss_pred HeEEeCCCHHHHHHHHHCCCeEEEEccCCCCCcchhhcCCCeEeCCHHHH
Confidence 9999999999999999999999999875432211 23578888888764
No 15
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.96 E-value=7.2e-28 Score=211.47 Aligned_cols=207 Identities=25% Similarity=0.288 Sum_probs=169.1
Q ss_pred CccEEEEecCCccccChH-HHHHHHHHHHHHcCCCCChhh-hhhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 021360 8 LMSCVILDLDGTLLNTDG-MFSEVLKTFLVKYGKEWDGRE-KHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD 85 (313)
Q Consensus 8 ~~k~vifDlDGTL~d~~~-~~~~~~~~~~~~~g~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (313)
..++|||||||||+|+.. .+..++.++++++|....... .....|.+..+.+..++.....+...+.+...+.+.+..
T Consensus 130 ~~~~VIFDlDGTLIDS~~~i~~~a~~~l~~e~G~~~~~~e~~~~~~G~~~~~~l~~ll~~~~~~~~~e~l~~~~~~~y~~ 209 (381)
T PLN02575 130 GWLGAIFEWEGVIIEDNPDLENQAWLTLAQEEGKSPPPAFILRRVEGMKNEQAISEVLCWSRDPAELRRMATRKEEIYQA 209 (381)
T ss_pred CCCEEEEcCcCcceeCHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 579999999999999976 566799999999998766654 467888888887777655332221223344444555544
Q ss_pred hh-ccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCC
Q 021360 86 HL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME 164 (313)
Q Consensus 86 ~~-~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~ 164 (313)
.. ....++||+.++|+.|++.|++++++|+++...++..+ +++|+..+|+.+++++++...||+|+.|..+++++|++
T Consensus 210 ~~~~~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L-~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~ 288 (381)
T PLN02575 210 LQGGIYRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAI-GSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLNFI 288 (381)
T ss_pred HhccCCCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcCCC
Confidence 43 34689999999999999999999999999999999888 88999999999999999999999999999999999999
Q ss_pred CCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCccccccccceeeccccccCc
Q 021360 165 PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRP 216 (313)
Q Consensus 165 ~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~~l~e~~~ 216 (313)
|++|++|||+..|+++|+++|+.++++....... ....++.+++++.++..
T Consensus 289 Peecl~IGDS~~DIeAAk~AGm~~IgV~~~~~~~-~l~~Ad~iI~s~~EL~~ 339 (381)
T PLN02575 289 PERCIVFGNSNQTVEAAHDARMKCVAVASKHPIY-ELGAADLVVRRLDELSI 339 (381)
T ss_pred cccEEEEcCCHHHHHHHHHcCCEEEEECCCCChh-HhcCCCEEECCHHHHHH
Confidence 9999999999999999999999999998743222 22347888999988744
No 16
>PF01687 Flavokinase: Riboflavin kinase; InterPro: IPR015865 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents the riboflavin kinase domains from bacteria and eukaryotes.; GO: 0008531 riboflavin kinase activity, 0009231 riboflavin biosynthetic process; PDB: 1Q9S_A 1NB9_A 1P4M_A 1NB0_A 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A ....
Probab=99.96 E-value=1.5e-30 Score=193.29 Aligned_cols=77 Identities=42% Similarity=0.711 Sum_probs=70.0
Q ss_pred CCCCccccccceeeeecCCCcccCccccccCCCccccccCCCCCeEEEEEEEecCCceeEEEEEecCCccccCCcceEee
Q 021360 232 LPSEPWYIGGPVVKGLGRGSKVLGIPTANLSTEGYSDVLSEHPSGVYFGWAGLSTRGVYKMVMSIGWNPYFDNAEKTIVS 311 (313)
Q Consensus 232 ~lg~p~~~~g~v~~g~~~g~~~lg~ptan~~~~~~~~~~p~~~~gvy~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~e~ 311 (313)
|||+||.++|+|+||+++||+ ||||||||.+++. +++| +.||||+|+.+ ++.+|+||+|||+||||++...+||+
T Consensus 1 LLG~py~i~G~Vv~G~~~Gr~-lGfPTANl~~~~~-~~~p--~~GVYa~~v~~-~~~~~~~v~niG~~PTf~~~~~~vE~ 75 (125)
T PF01687_consen 1 LLGRPYSISGTVVHGFGRGRK-LGFPTANLDIPDD-KLLP--KEGVYAVWVRV-DGKWYPGVTNIGYRPTFDGKERTVEV 75 (125)
T ss_dssp HHTSSEEEEEEEEC-SSCCCC-TTS-EEEEEEHCC-CTCC--CTEEEEEEEEE-TSEEEEEEEEEEEETTTSSCEEEEEE
T ss_pred CcCCCEEEEEEEEeCCccccc-cCCccccccCCcc-cccc--cCEEEEEEEEE-CCEEEEeEEEecCCCccCcCceeEEE
Confidence 589999999999999999999 9999999999555 8999 78999999999 78899999999999999888899999
Q ss_pred cC
Q 021360 312 LT 313 (313)
Q Consensus 312 ~~ 313 (313)
||
T Consensus 76 hi 77 (125)
T PF01687_consen 76 HI 77 (125)
T ss_dssp EE
T ss_pred EE
Confidence 96
No 17
>PRK11587 putative phosphatase; Provisional
Probab=99.96 E-value=1.3e-27 Score=199.21 Aligned_cols=202 Identities=27% Similarity=0.401 Sum_probs=156.0
Q ss_pred CccEEEEecCCccccChHHHHHHHHHHHHHcCCCCChhhhhhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHH--HH-
Q 021360 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSM--FS- 84 (313)
Q Consensus 8 ~~k~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~- 84 (313)
++|+|+||+||||+|+...+..++.++++++|.+. .+......|.+....+..+.. ..+.+.+...+... +.
T Consensus 2 ~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~-~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 76 (218)
T PRK11587 2 RCKGFLFDLDGTLVDSLPAVERAWSNWADRHGIAP-DEVLNFIHGKQAITSLRHFMA----GASEAEIQAEFTRLEQIEA 76 (218)
T ss_pred CCCEEEEcCCCCcCcCHHHHHHHHHHHHHHcCCCH-HHHHHHHcCCCHHHHHHHHhc----cCCcHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999764 222333446666655554432 12233333333321 11
Q ss_pred hhhccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCC
Q 021360 85 DHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME 164 (313)
Q Consensus 85 ~~~~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~ 164 (313)
.......++||+.++|+.|+++|++++++||+........+ +..++ .+|+.+++++++...||+|+.+..+++++|++
T Consensus 77 ~~~~~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l-~~~~l-~~~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~ 154 (218)
T PRK11587 77 TDTEGITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARH-KAAGL-PAPEVFVTAERVKRGKPEPDAYLLGAQLLGLA 154 (218)
T ss_pred hhhcCceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHH-HhcCC-CCccEEEEHHHhcCCCCCcHHHHHHHHHcCCC
Confidence 12246789999999999999999999999999887776666 66777 45788888888888999999999999999999
Q ss_pred CCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCccccccccceeeccccccCcc
Q 021360 165 PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPE 217 (313)
Q Consensus 165 ~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~~l~e~~~~ 217 (313)
|++|++|||+..|+.+|+++|+.++++..+.... ....++.++.++.++...
T Consensus 155 p~~~l~igDs~~di~aA~~aG~~~i~v~~~~~~~-~~~~~~~~~~~~~el~~~ 206 (218)
T PRK11587 155 PQECVVVEDAPAGVLSGLAAGCHVIAVNAPADTP-RLDEVDLVLHSLEQLTVT 206 (218)
T ss_pred cccEEEEecchhhhHHHHHCCCEEEEECCCCchh-hhccCCEEecchhheeEE
Confidence 9999999999999999999999999998754222 233578888888887543
No 18
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.96 E-value=1.8e-27 Score=202.95 Aligned_cols=187 Identities=17% Similarity=0.247 Sum_probs=149.9
Q ss_pred ccEEEEecCCccccChH-HHHHHHHHHHHHcCCCCChhhhhhhcCCCHHHHHHH----------HHHHhCCCCCHHH---
Q 021360 9 MSCVILDLDGTLLNTDG-MFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAI----------IVEDYGLPCAKHE--- 74 (313)
Q Consensus 9 ~k~vifDlDGTL~d~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~----------~~~~~~~~~~~~~--- 74 (313)
+++|+||+||||+|+.. .+..++.++++++|.+.+.+......|.+....+.. +...++...+...
T Consensus 2 ~k~viFD~DGTLiDs~~~~~~~a~~~~~~~~g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR01422 2 IEAVIFDWAGTTVDFGSFAPTQAFVEAFAEFGVQITLEEARGPMGLGKWDHIRALLKMPAVAERWRAKFGRLPTEADIEA 81 (253)
T ss_pred ceEEEEeCCCCeecCCCccHHHHHHHHHHHcCCCccHHHHHHhcCccHHHHHHHHhcCHHHHHHHHHHhCCCCCHHHHHH
Confidence 68999999999999854 346788999999998877777766777665443332 3344554433322
Q ss_pred HHHHHHHHHHhhh-ccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCcccc-ceEEecCCCCCCCCChH
Q 021360 75 FVNEVYSMFSDHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF-SVIVGSDEVRTGKPSPD 152 (313)
Q Consensus 75 ~~~~~~~~~~~~~-~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f-~~v~~~~~~~~~kp~~~ 152 (313)
+...+.+.+.... ....++||+.++|+.|++.|++++++||++...++..+ +++++..+| +.+++++++...||+|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l-~~~gl~~~f~d~ii~~~~~~~~KP~p~ 160 (253)
T TIGR01422 82 IYEAFEPLQLAKLAEYSSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVA-PEAALQGYRPDYNVTTDDVPAGRPAPW 160 (253)
T ss_pred HHHHHHHHHHHHHHhcCccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHH-HHHHhcCCCCceEEccccCCCCCCCHH
Confidence 2223333322222 45789999999999999999999999999999998888 888999986 89999999999999999
Q ss_pred HHHHHHHHcCCC-CCcEEEEecCHhhHHHHHHcCCeEEEeCCCCC
Q 021360 153 IFLEAAKRLNME-PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPK 196 (313)
Q Consensus 153 ~~~~~~~~~~~~-~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~ 196 (313)
.+..+++++++. |++|++|||+.+|+.+|+++|+.++.+.++..
T Consensus 161 ~~~~a~~~l~~~~~~~~l~IGDs~~Di~aA~~aGi~~i~v~~g~~ 205 (253)
T TIGR01422 161 MALKNAIELGVYDVAACVKVGDTVPDIEEGRNAGMWTVGLILSSN 205 (253)
T ss_pred HHHHHHHHcCCCCchheEEECCcHHHHHHHHHCCCeEEEEecCCc
Confidence 999999999995 99999999999999999999999999988653
No 19
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.96 E-value=2e-27 Score=198.68 Aligned_cols=203 Identities=24% Similarity=0.376 Sum_probs=163.9
Q ss_pred CccEEEEecCCccccChHHHHHHHHHHHHHcCCCCChhh-hhhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Q 021360 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGRE-KHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDH 86 (313)
Q Consensus 8 ~~k~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (313)
++++|+||+||||+|+...+..++.++++++|...+.+. .....|......+..+...++.+.+.+++...+.+.+...
T Consensus 3 ~~~~viFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (221)
T PRK10563 3 QIEAVFFDCDGTLVDSEVICSRAYVTMFAEFGITLSLEEVFKRFKGVKLYEIIDIISKEHGVTLAKAELEPVYRAEVARL 82 (221)
T ss_pred CCCEEEECCCCCCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 579999999999999999989999999999998876544 3555677778888888888887766666655555444333
Q ss_pred h-ccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccc-eEEecCCCCCCCCChHHHHHHHHHcCCC
Q 021360 87 L-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS-VIVGSDEVRTGKPSPDIFLEAAKRLNME 164 (313)
Q Consensus 87 ~-~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~-~v~~~~~~~~~kp~~~~~~~~~~~~~~~ 164 (313)
. ....++||+.++|+.| +++++++||++...+...+ +++++..+|+ .++++++++..||+|+.|..++++++++
T Consensus 83 ~~~~~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l-~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~ 158 (221)
T PRK10563 83 FDSELEPIAGANALLESI---TVPMCVVSNGPVSKMQHSL-GKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEAMNVN 158 (221)
T ss_pred HHccCCcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHH-HhcChHHhCcceEeeHHhcCCCCCChHHHHHHHHHcCCC
Confidence 2 4678999999999998 3899999999998888888 8899999995 6888888889999999999999999999
Q ss_pred CCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCccccccccceeecccccc
Q 021360 165 PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDL 214 (313)
Q Consensus 165 ~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~~l~e~ 214 (313)
|++|++|||+..|+.+|+++|++++++............++.++.++.++
T Consensus 159 p~~~l~igDs~~di~aA~~aG~~~i~~~~~~~~~~~~~~~~~~~~~~~~l 208 (221)
T PRK10563 159 VENCILVDDSSAGAQSGIAAGMEVFYFCADPHNKPIDHPLVTTFTDLAQL 208 (221)
T ss_pred HHHeEEEeCcHhhHHHHHHCCCEEEEECCCCCCcchhhhhhHHHHHHHHH
Confidence 99999999999999999999999998865322221112234456666554
No 20
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.96 E-value=4.3e-27 Score=202.05 Aligned_cols=189 Identities=19% Similarity=0.261 Sum_probs=149.1
Q ss_pred cCccEEEEecCCccccChHH-HHHHHHHHHHHcCCCCChhhhhhhcCCCHHHHHHHH----------HHHhCCCCCHHH-
Q 021360 7 KLMSCVILDLDGTLLNTDGM-FSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAII----------VEDYGLPCAKHE- 74 (313)
Q Consensus 7 ~~~k~vifDlDGTL~d~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~----------~~~~~~~~~~~~- 74 (313)
+++|+|+||+||||+|+... +..++.++++++|.+.+.+......|......+..+ ...++...+...
T Consensus 2 ~~~k~vIFDlDGTLiDs~~~~~~~a~~~~~~~~g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 81 (267)
T PRK13478 2 MKIQAVIFDWAGTTVDFGSFAPTQAFVEAFAQFGVEITLEEARGPMGLGKWDHIRALLKMPRVAARWQAVFGRLPTEADV 81 (267)
T ss_pred CceEEEEEcCCCCeecCCCccHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHhcHHHHHHHHHHhCCCCCHHHH
Confidence 46899999999999998543 367899999999988777766667776654433332 234454333322
Q ss_pred --HHHHHHHHHHhhh-ccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCcccc-ceEEecCCCCCCCCC
Q 021360 75 --FVNEVYSMFSDHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF-SVIVGSDEVRTGKPS 150 (313)
Q Consensus 75 --~~~~~~~~~~~~~-~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f-~~v~~~~~~~~~kp~ 150 (313)
+...+.+.+.... ....++||+.++|+.|++.|++++++||++...+...+ +.+++..+| +.+++++++...||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l-~~~~l~~~~~d~i~~~~~~~~~KP~ 160 (267)
T PRK13478 82 DALYAAFEPLQIAKLADYATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVV-PLAAAQGYRPDHVVTTDDVPAGRPY 160 (267)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHH-HHHhhcCCCceEEEcCCcCCCCCCC
Confidence 2233333333222 35789999999999999999999999999999888777 777877764 899999999899999
Q ss_pred hHHHHHHHHHcCCC-CCcEEEEecCHhhHHHHHHcCCeEEEeCCCCC
Q 021360 151 PDIFLEAAKRLNME-PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPK 196 (313)
Q Consensus 151 ~~~~~~~~~~~~~~-~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~ 196 (313)
|+.+..+++++|+. +++|++|||+.+|+.+|+++|+.++.+..+..
T Consensus 161 p~~~~~a~~~l~~~~~~e~l~IGDs~~Di~aA~~aG~~~i~v~~g~~ 207 (267)
T PRK13478 161 PWMALKNAIELGVYDVAACVKVDDTVPGIEEGLNAGMWTVGVILSGN 207 (267)
T ss_pred hHHHHHHHHHcCCCCCcceEEEcCcHHHHHHHHHCCCEEEEEccCcc
Confidence 99999999999996 69999999999999999999999999988653
No 21
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.96 E-value=2.4e-27 Score=198.30 Aligned_cols=206 Identities=21% Similarity=0.316 Sum_probs=148.5
Q ss_pred CccEEEEecCCccccChHHHHHHHHHH---HHHcCCCCChhhhhhhcC-------CCHHHHHHHHHHHhCCCCCHHHHHH
Q 021360 8 LMSCVILDLDGTLLNTDGMFSEVLKTF---LVKYGKEWDGREKHKIVG-------KTPLEEAAIIVEDYGLPCAKHEFVN 77 (313)
Q Consensus 8 ~~k~vifDlDGTL~d~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (313)
|+++|+||+||||+|+...+..++..+ +.++|.+.+.+....... ..............+.....+....
T Consensus 1 ~~~~viFDlDGTL~ds~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (221)
T TIGR02253 1 MIKAIFFDLDDTLIDTSGLAEKARRNAIEVLIEAGLNVDFEEAYEELLKLIKEYGSNYPTHFDYLIRRLWEEYNPKLVAA 80 (221)
T ss_pred CceEEEEeCCCCCcCCCCccCHHHHHHHHHHHHCCCcCCHHHHHHHHHHHHHHhccccCcchHHHHHHHhhhcCHHHHHH
Confidence 478999999999999988777766654 445666665544422111 1000011112222222212222222
Q ss_pred HHHHHHHhhhccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHH
Q 021360 78 EVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEA 157 (313)
Q Consensus 78 ~~~~~~~~~~~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~ 157 (313)
..............++||+.++|+.|++.|++++++||++...+...+ +++++..+|+.++++++++..||+|+.+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l-~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~ 159 (221)
T TIGR02253 81 FVYAYHKLKFAYLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKL-ERLGVRDFFDAVITSEEEGVEKPHPKIFYAA 159 (221)
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHH-HhCChHHhccEEEEeccCCCCCCCHHHHHHH
Confidence 222222323345789999999999999999999999999988888888 8899999999999999999999999999999
Q ss_pred HHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEeCCCCCcc---ccccccceeecccccc
Q 021360 158 AKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQT---HRYTAADEVINSLLDL 214 (313)
Q Consensus 158 ~~~~~~~~~~~i~vgD~~-~Di~~a~~~G~~~i~v~~~~~~~---~~~~~s~~ii~~l~e~ 214 (313)
++++|+++++|++|||+. +|+.+|+++|+.++++..+.... .....++.+++++.++
T Consensus 160 ~~~~~~~~~~~~~igDs~~~di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~el 220 (221)
T TIGR02253 160 LKRLGVKPEEAVMVGDRLDKDIKGAKNLGMKTVWINQGKSSKMEDDVYPYPDYEISSLREL 220 (221)
T ss_pred HHHcCCChhhEEEECCChHHHHHHHHHCCCEEEEECCCCCcccccccccCCCeeeCcHHhh
Confidence 999999999999999998 89999999999999998754322 1122467777777553
No 22
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.95 E-value=8.1e-27 Score=200.17 Aligned_cols=208 Identities=25% Similarity=0.303 Sum_probs=164.5
Q ss_pred cCccEEEEecCCccccChHHHHHHHHHHHHHcCCCCC-hhhhhhhcCCCHHHHHHHHHHH----hCCCC-CHHHHHHHHH
Q 021360 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWD-GREKHKIVGKTPLEEAAIIVED----YGLPC-AKHEFVNEVY 80 (313)
Q Consensus 7 ~~~k~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~g~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~ 80 (313)
.++|+|+||+||||+|+.+.+..++..+++++|.... .+......|.+.......++.. .+.+. ..+...+.+.
T Consensus 11 ~~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (272)
T PRK13223 11 RLPRLVMFDLDGTLVDSVPDLAAAVDRMLLELGRPPAGLEAVRHWVGNGAPVLVRRALAGSIDHDGVDDELAEQALALFM 90 (272)
T ss_pred ccCCEEEEcCCCccccCHHHHHHHHHHHHHHcCCCCCCHHHHHHHhChhHHHHHHHHhcccccccCCCHHHHHHHHHHHH
Confidence 5789999999999999999999999999999998753 4445566777665555544322 12221 1222233333
Q ss_pred HHHHhhhccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHH
Q 021360 81 SMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKR 160 (313)
Q Consensus 81 ~~~~~~~~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~ 160 (313)
+.+........++||+.++|+.|++.|++++++||++...+...+ +++++..+|+.+++++++...||+|+.+..++++
T Consensus 91 ~~~~~~~~~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l-~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~ 169 (272)
T PRK13223 91 EAYADSHELTVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLL-DQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKM 169 (272)
T ss_pred HHHHhcCcCCccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHH-HHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHHH
Confidence 333333334678999999999999999999999999998888788 7789999999999999988899999999999999
Q ss_pred cCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCcccc--ccccceeeccccccC
Q 021360 161 LNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR--YTAADEVINSLLDLR 215 (313)
Q Consensus 161 ~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~--~~~s~~ii~~l~e~~ 215 (313)
+|+++++|++|||+.+|+.+|+++|++++++..+...... ...++.++.++.++.
T Consensus 170 ~g~~~~~~l~IGD~~~Di~aA~~aGi~~i~v~~G~~~~~~l~~~~~~~vi~~l~el~ 226 (272)
T PRK13223 170 AGVPPSQSLFVGDSRSDVLAAKAAGVQCVALSYGYNHGRPIAEESPALVIDDLRALL 226 (272)
T ss_pred hCCChhHEEEECCCHHHHHHHHHCCCeEEEEecCCCCchhhhhcCCCEEECCHHHHH
Confidence 9999999999999999999999999999999875433222 236888998888764
No 23
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.95 E-value=1.3e-26 Score=188.41 Aligned_cols=179 Identities=30% Similarity=0.439 Sum_probs=150.6
Q ss_pred EEEEecCCccccChHHHHHHHHHHHHHcCCCCChhhhhhhcCCCHHHHHHHHHHHhCCCCCHHHH---HHHHHHHHHhhh
Q 021360 11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEF---VNEVYSMFSDHL 87 (313)
Q Consensus 11 ~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 87 (313)
+|+||+||||+|+...+..++.++++.+|.+.+........|....+.+..++...+...+.+.. ...+.+.+...+
T Consensus 1 ~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR01990 1 AVIFDLDGVITDTAEYHYLAWKALADELGIPFDEEFNESLKGVSREDSLERILDLGGKKYSEEEKEELAERKNDYYVELL 80 (185)
T ss_pred CeEEcCCCccccChHHHHHHHHHHHHHcCCCCCHHHHHHhcCCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999988777777778888888888888888776554332 233333333322
Q ss_pred ---ccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCC
Q 021360 88 ---CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME 164 (313)
Q Consensus 88 ---~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~ 164 (313)
....++||+.++|+.|++.|++++++|++.. ....+ +++++..+|+.++++++....||+|+.|+.++++++++
T Consensus 81 ~~~~~~~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l-~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~ 157 (185)
T TIGR01990 81 KELTPADVLPGIKNLLDDLKKNNIKIALASASKN--APTVL-EKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEGLGVS 157 (185)
T ss_pred HhcCCcccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHH-HhcCcHhhCcEEEehhhcCCCCCChHHHHHHHHHcCCC
Confidence 2357899999999999999999999998753 34456 88999999999999999999999999999999999999
Q ss_pred CCcEEEEecCHhhHHHHHHcCCeEEEeC
Q 021360 165 PSSSLVIEDSVIGVVAGKAAGMEVVAVP 192 (313)
Q Consensus 165 ~~~~i~vgD~~~Di~~a~~~G~~~i~v~ 192 (313)
+++|++|||+.+|+.+|+++|++++.|.
T Consensus 158 ~~~~v~vgD~~~di~aA~~aG~~~i~v~ 185 (185)
T TIGR01990 158 PSECIGIEDAQAGIEAIKAAGMFAVGVG 185 (185)
T ss_pred HHHeEEEecCHHHHHHHHHcCCEEEecC
Confidence 9999999999999999999999998873
No 24
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.95 E-value=5.6e-26 Score=190.67 Aligned_cols=208 Identities=22% Similarity=0.306 Sum_probs=168.0
Q ss_pred cCccEEEEecCCccccChHHHHHHHHHHHHHcCCC-CChhhhhhhcCCCHHHHHHHHHHHhCCCCCHHHH---HHHHHHH
Q 021360 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEF---VNEVYSM 82 (313)
Q Consensus 7 ~~~k~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 82 (313)
+++++|+||+||||+|+.+.+..++..++++++.+ .+........|......+...+...+...+..+. ...+.+.
T Consensus 4 ~~~~~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (226)
T PRK13222 4 MDIRAVAFDLDGTLVDSAPDLAAAVNAALAALGLPPAGEERVRTWVGNGADVLVERALTWAGREPDEELLEKLRELFDRH 83 (226)
T ss_pred CcCcEEEEcCCcccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhCccHHHHHHHHHhhccCCccHHHHHHHHHHHHHH
Confidence 56899999999999999888888999999999876 4555666777777777776666654443333322 2333343
Q ss_pred HHhhh-ccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHc
Q 021360 83 FSDHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL 161 (313)
Q Consensus 83 ~~~~~-~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~ 161 (313)
+.... ....++||+.++++.+++.|++++++|++....++..+ +++++..+|+.+++++++...||+|+.++.+++++
T Consensus 84 ~~~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l-~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~ 162 (226)
T PRK13222 84 YAENVAGGSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLL-EALGIADYFSVVIGGDSLPNKKPDPAPLLLACEKL 162 (226)
T ss_pred HHHhccccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCCccCccEEEcCCCCCCCCcChHHHHHHHHHc
Confidence 44333 25789999999999999999999999999999888888 88899999999999999889999999999999999
Q ss_pred CCCCCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCccc--cccccceeeccccccC
Q 021360 162 NMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTH--RYTAADEVINSLLDLR 215 (313)
Q Consensus 162 ~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~--~~~~s~~ii~~l~e~~ 215 (313)
++++++|++|||+.+|+.+|+++|+.++++..+..... ....++++++++.++.
T Consensus 163 ~~~~~~~i~igD~~~Di~~a~~~g~~~i~v~~g~~~~~~~~~~~~~~~i~~~~~l~ 218 (226)
T PRK13222 163 GLDPEEMLFVGDSRNDIQAARAAGCPSVGVTYGYNYGEPIALSEPDVVIDHFAELL 218 (226)
T ss_pred CCChhheEEECCCHHHHHHHHHCCCcEEEECcCCCCccchhhcCCCEEECCHHHHH
Confidence 99999999999999999999999999999987543221 1235788888887753
No 25
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.95 E-value=2.8e-26 Score=186.54 Aligned_cols=180 Identities=30% Similarity=0.497 Sum_probs=151.0
Q ss_pred ccEEEEecCCccccChHHHHHHHHHHHHHcCCCCChhhhhhhcCCCHHHHHHHHHHHhCCCCCHHH---HHHHHHHHHHh
Q 021360 9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHE---FVNEVYSMFSD 85 (313)
Q Consensus 9 ~k~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 85 (313)
+++|+||+||||+|+...+..++.++++++|..++........|......+..++..++...+.+. +.....+.+..
T Consensus 1 ~~~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR02009 1 YKAVIFDMDGVIVDTAPLHAQAWKHLADKYGIEFDKQYNTSLGGLSREDILRAILKLRKPGLSLETIHQLAERKNELYRE 80 (185)
T ss_pred CCeEEEcCCCcccCChHHHHHHHHHHHHHcCCCCCHHHHHHcCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999988775555667777778888888887754444333 23333444444
Q ss_pred hh--ccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCC
Q 021360 86 HL--CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM 163 (313)
Q Consensus 86 ~~--~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~ 163 (313)
.. ....++||+.++|+.|++.|++++++|++ ..++..+ +++++..+|+.++++++....||+|+.+..+++++++
T Consensus 81 ~~~~~~~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l-~~~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~ 157 (185)
T TIGR02009 81 LLRLTGAEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRIL-AKLGLTDYFDAIVDADEVKEGKPHPETFLLAAELLGV 157 (185)
T ss_pred HHhccCCCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHH-HHcChHHHCCEeeehhhCCCCCCChHHHHHHHHHcCC
Confidence 33 34789999999999999999999999988 5566677 8899999999999999998999999999999999999
Q ss_pred CCCcEEEEecCHhhHHHHHHcCCeEEEe
Q 021360 164 EPSSSLVIEDSVIGVVAGKAAGMEVVAV 191 (313)
Q Consensus 164 ~~~~~i~vgD~~~Di~~a~~~G~~~i~v 191 (313)
+++++++|||+..|+.+|+++|++++.|
T Consensus 158 ~~~~~v~IgD~~~di~aA~~~G~~~i~v 185 (185)
T TIGR02009 158 SPNECVVFEDALAGVQAARAAGMFAVAV 185 (185)
T ss_pred CHHHeEEEeCcHhhHHHHHHCCCeEeeC
Confidence 9999999999999999999999998764
No 26
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.95 E-value=7.5e-26 Score=184.39 Aligned_cols=213 Identities=38% Similarity=0.591 Sum_probs=188.2
Q ss_pred ccccCccEEEEecCCccccChHHHHHHHHHHHHHcCCCCChhhhhhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 021360 4 PLKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMF 83 (313)
Q Consensus 4 ~~~~~~k~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (313)
.+...+.+++||+||||+|++..+.+++..++.++|..++.....+..|....+..+.++..+..+.+.+++..+..+..
T Consensus 5 ~~~~~~~~~lfD~dG~lvdte~~y~~~~~~~~~~ygk~~~~~~~~~~mG~~~~eaa~~~~~~~~dp~s~ee~~~e~~~~~ 84 (222)
T KOG2914|consen 5 SLSLKVSACLFDMDGTLVDTEDLYTEAWQELLDRYGKPYPWDVKVKSMGKRTSEAARLFVKKLPDPVSREEFNKEEEEIL 84 (222)
T ss_pred ccccceeeEEEecCCcEEecHHHHHHHHHHHHHHcCCCChHHHHHHHcCCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Confidence 34456789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HhhhccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEe--cCCCCCCCCChHHHHHHHHHc
Q 021360 84 SDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVG--SDEVRTGKPSPDIFLEAAKRL 161 (313)
Q Consensus 84 ~~~~~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~--~~~~~~~kp~~~~~~~~~~~~ 161 (313)
...+....+.||+.++++.|+..|++++++|++++...+..+..+.++...|+.++. +.++..+||+|+.|..+++++
T Consensus 85 ~~~~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l 164 (222)
T KOG2914|consen 85 DRLFMNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAAKRL 164 (222)
T ss_pred HHhccccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCeecCCccccCCCCCchHHHHHHHhc
Confidence 999999999999999999999999999999999998888888444447788888887 667889999999999999999
Q ss_pred CCCC-CcEEEEecCHhhHHHHHHcCCeEEEeCCCCCccccccccceeeccccccCc
Q 021360 162 NMEP-SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRP 216 (313)
Q Consensus 162 ~~~~-~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~~l~e~~~ 216 (313)
|.++ +.|++|+|++.++++|+++|+++++++...........++.+++++.+..+
T Consensus 165 ~~~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (222)
T KOG2914|consen 165 GVPPPSKCLVFEDSPVGVQAAKAAGMQVVGVATPDLSNLFSAGATLILESLEDFKP 220 (222)
T ss_pred CCCCccceEEECCCHHHHHHHHhcCCeEEEecCCCcchhhhhccceecccccccCc
Confidence 9999 999999999999999999999999999843333334467777777766543
No 27
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.95 E-value=4.9e-26 Score=188.12 Aligned_cols=195 Identities=25% Similarity=0.334 Sum_probs=154.9
Q ss_pred EEEecCCccccChHHHHHHHHHHHHHc-CCC-CChhhhhhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhcc
Q 021360 12 VILDLDGTLLNTDGMFSEVLKTFLVKY-GKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCK 89 (313)
Q Consensus 12 vifDlDGTL~d~~~~~~~~~~~~~~~~-g~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (313)
|+|||||||+|+...+.++++++++++ +.+ .+.+.+.+..|......+ +..+.+.... .............
T Consensus 1 iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~~~ 73 (205)
T TIGR01454 1 VVFDLDGVLVDSFAVMREAFAIAYREVVGDGPAPFEEYRRHLGRYFPDIM----RIMGLPLEME---EPFVRESYRLAGE 73 (205)
T ss_pred CeecCcCccccCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHhCccHHHHH----HHcCCCHHHH---HHHHHHHHHhhcc
Confidence 689999999999999999999999874 653 456666677776654443 3344432111 1111112222356
Q ss_pred CCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcEE
Q 021360 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (313)
Q Consensus 90 ~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i 169 (313)
..++||+.++|+.|++.|++++++||+....+...+ +++++..+|+.++++++....||+++.+..+++++++++++|+
T Consensus 74 ~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l-~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~l 152 (205)
T TIGR01454 74 VEVFPGVPELLAELRADGVGTAIATGKSGPRARSLL-EALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPEDAV 152 (205)
T ss_pred cccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHH-HHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCChhheE
Confidence 889999999999999999999999999999988888 8899999999999999988899999999999999999999999
Q ss_pred EEecCHhhHHHHHHcCCeEEEeCCCCCcccc--ccccceeecccccc
Q 021360 170 VIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR--YTAADEVINSLLDL 214 (313)
Q Consensus 170 ~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~--~~~s~~ii~~l~e~ 214 (313)
+|||+.+|+.+|+++|++++.+.++...... ...++.++.++.++
T Consensus 153 ~igD~~~Di~aA~~~Gi~~i~~~~g~~~~~~l~~~~~~~~~~~~~~l 199 (205)
T TIGR01454 153 MVGDAVTDLASARAAGTATVAALWGEGDAGELLAARPDFLLRKPQSL 199 (205)
T ss_pred EEcCCHHHHHHHHHcCCeEEEEEecCCChhhhhhcCCCeeeCCHHHH
Confidence 9999999999999999999999876543322 23577888877664
No 28
>PLN02811 hydrolase
Probab=99.95 E-value=6.9e-26 Score=189.09 Aligned_cols=206 Identities=41% Similarity=0.700 Sum_probs=166.0
Q ss_pred cCCccccChHHHHHHHHHHHHHcCCCCChhhhhhhcCCCHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHhhhccCCCC
Q 021360 16 LDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPC--AKHEFVNEVYSMFSDHLCKVKAL 93 (313)
Q Consensus 16 lDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 93 (313)
+||||+|+...+..+|.++++++|...+.+......|......+..++...+.+. ..+.+.......+........++
T Consensus 1 ~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (220)
T PLN02811 1 MDGLLLDTEKFYTEVQEKILARYGKTFDWSLKAKMMGKKAIEAARIFVEESGLSDSLSPEDFLVEREAMLQDLFPTSDLM 80 (220)
T ss_pred CCCcceecHHHHHHHHHHHHHHcCCCCCHHHHHHccCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhhCCCC
Confidence 6999999999999999999999999877776777888888887788887777652 33444444444444444567899
Q ss_pred chHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecC--CCCCCCCChHHHHHHHHHcC---CCCCcE
Q 021360 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD--EVRTGKPSPDIFLEAAKRLN---MEPSSS 168 (313)
Q Consensus 94 pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~--~~~~~kp~~~~~~~~~~~~~---~~~~~~ 168 (313)
||+.++|+.|++.|++++++|++....+...+.+..++.++|+.+++++ ++...||+|+.+..++++++ ++|++|
T Consensus 81 ~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~~ 160 (220)
T PLN02811 81 PGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPVDPGKV 160 (220)
T ss_pred ccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCCCccce
Confidence 9999999999999999999999987665544435567888999999999 88889999999999999996 999999
Q ss_pred EEEecCHhhHHHHHHcCCeEEEeCCCCCccccccccceeeccccccCccccCC
Q 021360 169 LVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGL 221 (313)
Q Consensus 169 i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~~l~e~~~~~~~~ 221 (313)
++|||+..|+.+|+++|++++.+..+.........++.++.++.++....+++
T Consensus 161 v~IgDs~~di~aA~~aG~~~i~v~~~~~~~~~~~~~d~vi~~~~e~~~~~~~~ 213 (220)
T PLN02811 161 LVFEDAPSGVEAAKNAGMSVVMVPDPRLDKSYCKGADQVLSSLLDFKPEEWGL 213 (220)
T ss_pred EEEeccHhhHHHHHHCCCeEEEEeCCCCcHhhhhchhhHhcCHhhCCHHHcCC
Confidence 99999999999999999999999775433223336788899998876554433
No 29
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.95 E-value=5e-26 Score=194.52 Aligned_cols=201 Identities=19% Similarity=0.305 Sum_probs=160.5
Q ss_pred cCccEEEEecCCccccChHHHHHHHHHHHHHcCCC-CChhhhhhhcCCCHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHH
Q 021360 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPC-AKHEFVNEVYSMFS 84 (313)
Q Consensus 7 ~~~k~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 84 (313)
+++++++||+||||+|+.+.+..+++++++++|.. .+.+......+...... ++.++.+. ..+++...+.+.+.
T Consensus 60 ~~~k~vIFDlDGTLiDS~~~~~~a~~~~~~~~G~~~~~~~~~~~~~g~~~~~i----~~~~~~~~~~~~~~~~~~~~~~~ 135 (273)
T PRK13225 60 QTLQAIIFDFDGTLVDSLPTVVAIANAHAPDFGYDPIDERDYAQLRQWSSRTI----VRRAGLSPWQQARLLQRVQRQLG 135 (273)
T ss_pred hhcCEEEECCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhCccHHHH----HHHcCCCHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999976 55555666666554433 34444431 22334445555555
Q ss_pred hhhccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCC
Q 021360 85 DHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME 164 (313)
Q Consensus 85 ~~~~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~ 164 (313)
......+++||+.++|+.|++.|++++++|++....+...+ +++|+..+|+.++++++.. ++++.+..++++++++
T Consensus 136 ~~~~~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L-~~~gl~~~F~~vi~~~~~~---~k~~~~~~~l~~~~~~ 211 (273)
T PRK13225 136 DCLPALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFL-QRQGLRSLFSVVQAGTPIL---SKRRALSQLVAREGWQ 211 (273)
T ss_pred hhcccCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCChhheEEEEecCCCC---CCHHHHHHHHHHhCcC
Confidence 44556789999999999999999999999999999999888 8899999999988876642 4568899999999999
Q ss_pred CCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCcccc--ccccceeeccccccC
Q 021360 165 PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR--YTAADEVINSLLDLR 215 (313)
Q Consensus 165 ~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~--~~~s~~ii~~l~e~~ 215 (313)
|++|++|||+..|+.+|+++|+.++++..+...... ...++.+++++.++.
T Consensus 212 p~~~l~IGDs~~Di~aA~~AG~~~I~v~~g~~~~~~l~~~~ad~~i~~~~eL~ 264 (273)
T PRK13225 212 PAAVMYVGDETRDVEAARQVGLIAVAVTWGFNDRQSLVAACPDWLLETPSDLL 264 (273)
T ss_pred hhHEEEECCCHHHHHHHHHCCCeEEEEecCCCCHHHHHHCCCCEEECCHHHHH
Confidence 999999999999999999999999999886543321 235889999887763
No 30
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.94 E-value=2.8e-25 Score=186.19 Aligned_cols=201 Identities=20% Similarity=0.268 Sum_probs=151.3
Q ss_pred ccEEEEecCCccccChHHHHHHHHHHHHHcCCCCChhhhhhhc------------CC-CHH----HHHHHHHHHhCCCCC
Q 021360 9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIV------------GK-TPL----EEAAIIVEDYGLPCA 71 (313)
Q Consensus 9 ~k~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------------g~-~~~----~~~~~~~~~~~~~~~ 71 (313)
+|+|+||+||||+|+......++.++++++|...+......+. +. ... ..+..+++..+....
T Consensus 1 ~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T TIGR02254 1 YKTLLFDLDDTILDFQAAEALALRLLFEDQGIPLTEDMFAQYKEINQGLWRAYEEGKITKDEVVNTRFSALLKEYNTEAD 80 (224)
T ss_pred CCEEEEcCcCcccccchHHHHHHHHHHHHhCCCccHHHHHHHHHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCc
Confidence 5899999999999999998888999999888776543322111 11 111 112233444444322
Q ss_pred HHHHHHHHHHHHHhhhccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCCh
Q 021360 72 KHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSP 151 (313)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~ 151 (313)
.+.+...+.+.. .....++||+.++|+.+++. ++++++||+....+...+ +.+++..+|+.++++++.+..||+|
T Consensus 81 ~~~~~~~~~~~~---~~~~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l-~~~~l~~~fd~i~~~~~~~~~KP~~ 155 (224)
T TIGR02254 81 EALLNQKYLRFL---EEGHQLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRL-RKSGLFPFFDDIFVSEDAGIQKPDK 155 (224)
T ss_pred HHHHHHHHHHHH---hccCeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHH-HHCCcHhhcCEEEEcCccCCCCCCH
Confidence 222222222221 13468999999999999999 999999999999888777 8899999999999999999999999
Q ss_pred HHHHHHHHHc-CCCCCcEEEEecCH-hhHHHHHHcCCeEEEeCCCCCccccccccceeecccccc
Q 021360 152 DIFLEAAKRL-NMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDL 214 (313)
Q Consensus 152 ~~~~~~~~~~-~~~~~~~i~vgD~~-~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~~l~e~ 214 (313)
+.+..+++++ +++|++|++|||+. +|+.+|+++|++++++.++.........++.++.++.++
T Consensus 156 ~~~~~~~~~~~~~~~~~~v~igD~~~~di~~A~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~el 220 (224)
T TIGR02254 156 EIFNYALERMPKFSKEEVLMIGDSLTADIKGGQNAGLDTCWMNPDMHPNPDDIIPTYEIRSLEEL 220 (224)
T ss_pred HHHHHHHHHhcCCCchheEEECCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCceEECCHHHH
Confidence 9999999999 99999999999998 799999999999999987433222223466777777664
No 31
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.94 E-value=2e-25 Score=183.49 Aligned_cols=179 Identities=18% Similarity=0.329 Sum_probs=135.9
Q ss_pred ccEEEEecCCccccChHHHHHHHHHHHHHcCCCCChh-------h-h-hhhcCC--C----HHHHHHHHHHHhCCCCCHH
Q 021360 9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGR-------E-K-HKIVGK--T----PLEEAAIIVEDYGLPCAKH 73 (313)
Q Consensus 9 ~k~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~-------~-~-~~~~g~--~----~~~~~~~~~~~~~~~~~~~ 73 (313)
+|+|+||+||||+|+... ...+.+.+...+...... . . ....|. . ....+..++..++...+..
T Consensus 1 ik~viFD~dgTLiD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 79 (198)
T TIGR01428 1 IKALVFDVYGTLFDVHSV-VERFAELYGGRGEALSQLWRQKQLEYSWLRTLMGPYADFWDLTREALRYLLGRLGLEDDES 79 (198)
T ss_pred CcEEEEeCCCcCccHHHH-HHHHHHHhCchHHHHHHHHHHHHHHHHHHHHccCCCcCHHHHHHHHHHHHHHHcCCCCCHH
Confidence 478999999999999865 334444432222111100 0 0 111121 1 1244566677777764332
Q ss_pred HHHHHHHHHHHhhhccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHH
Q 021360 74 EFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI 153 (313)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~ 153 (313)
. .+. +.+.+....++||+.++|+.|++.|++++++||++...+...+ +++|+..+|+.++++++++..||+|+.
T Consensus 80 ~-~~~----~~~~~~~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l-~~~gl~~~fd~i~~s~~~~~~KP~~~~ 153 (198)
T TIGR01428 80 A-ADR----LAEAYLRLPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLV-KHAGLDDPFDAVLSADAVRAYKPAPQV 153 (198)
T ss_pred H-HHH----HHHHHhcCCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHCCChhhhheeEehhhcCCCCCCHHH
Confidence 2 222 2333356789999999999999999999999999999998888 889999999999999999999999999
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCCC
Q 021360 154 FLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL 194 (313)
Q Consensus 154 ~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~ 194 (313)
|..+++++|++|++|++|||+..|+.+|+++|++++++++.
T Consensus 154 ~~~~~~~~~~~p~~~~~vgD~~~Di~~A~~~G~~~i~v~r~ 194 (198)
T TIGR01428 154 YQLALEALGVPPDEVLFVASNPWDLGGAKKFGFKTAWVNRP 194 (198)
T ss_pred HHHHHHHhCCChhhEEEEeCCHHHHHHHHHCCCcEEEecCC
Confidence 99999999999999999999999999999999999999873
No 32
>PRK09449 dUMP phosphatase; Provisional
Probab=99.94 E-value=4.1e-25 Score=185.16 Aligned_cols=197 Identities=22% Similarity=0.338 Sum_probs=143.5
Q ss_pred CccEEEEecCCccccChHHHHHHHHHHHHHcCCCCChhhhhhh--cCCC-----------HHHH----HHHHHHHhCCCC
Q 021360 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKI--VGKT-----------PLEE----AAIIVEDYGLPC 70 (313)
Q Consensus 8 ~~k~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~g~~-----------~~~~----~~~~~~~~~~~~ 70 (313)
++|+|+||+||||+|.. ...++.++++++|...+.+....+ .+.. ..+. +..+...++.+
T Consensus 2 ~~k~iiFDlDGTLid~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 78 (224)
T PRK09449 2 KYDWILFDADETLFHFD--AFAGLQRMFSRYGVDFTAEDFQDYQAVNKPLWVDYQNGAITALQLQHTRFESWAEKLNVT- 78 (224)
T ss_pred CccEEEEcCCCchhcch--hhHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCC-
Confidence 58999999999999854 346778888888877655443322 1111 1000 11222333321
Q ss_pred CHHHHHHHHHHHHHhhh-ccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCC
Q 021360 71 AKHEFVNEVYSMFSDHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKP 149 (313)
Q Consensus 71 ~~~~~~~~~~~~~~~~~-~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp 149 (313)
...+. +.+...+ ....++||+.++|+.|+ .|++++++||+........+ +++|+..+|+.++++++.+..||
T Consensus 79 -~~~~~----~~~~~~~~~~~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l-~~~~l~~~fd~v~~~~~~~~~KP 151 (224)
T PRK09449 79 -PGELN----SAFLNAMAEICTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRL-ERTGLRDYFDLLVISEQVGVAKP 151 (224)
T ss_pred -HHHHH----HHHHHHHhhcCccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHH-HhCChHHHcCEEEEECccCCCCC
Confidence 12222 2222222 34679999999999999 57999999999999888888 88999999999999999999999
Q ss_pred ChHHHHHHHHHcCCC-CCcEEEEecCH-hhHHHHHHcCCeEEEeCCCCCccccccccceeecccccc
Q 021360 150 SPDIFLEAAKRLNME-PSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDL 214 (313)
Q Consensus 150 ~~~~~~~~~~~~~~~-~~~~i~vgD~~-~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~~l~e~ 214 (313)
+|+.|..+++++|+. +++|++|||+. +|+.+|+++|+.++++.+..........++.++.++.++
T Consensus 152 ~p~~~~~~~~~~~~~~~~~~~~vgD~~~~Di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~i~~~~el 218 (224)
T PRK09449 152 DVAIFDYALEQMGNPDRSRVLMVGDNLHSDILGGINAGIDTCWLNAHGREQPEGIAPTYQVSSLSEL 218 (224)
T ss_pred CHHHHHHHHHHcCCCCcccEEEEcCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCeEEECCHHHH
Confidence 999999999999985 48999999998 699999999999999985322211122467788877765
No 33
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.94 E-value=1.1e-24 Score=188.19 Aligned_cols=209 Identities=26% Similarity=0.404 Sum_probs=152.0
Q ss_pred cCccEEEEecCCccccCh-HHHHHHHHHHHHHcCC-CC--Chhhhhh--hcCCCHHHHHHHHHHHhCCC--------CCH
Q 021360 7 KLMSCVILDLDGTLLNTD-GMFSEVLKTFLVKYGK-EW--DGREKHK--IVGKTPLEEAAIIVEDYGLP--------CAK 72 (313)
Q Consensus 7 ~~~k~vifDlDGTL~d~~-~~~~~~~~~~~~~~g~-~~--~~~~~~~--~~g~~~~~~~~~~~~~~~~~--------~~~ 72 (313)
..+++|+|||||||+|+. ..+..++.++++++|. .. +.+.+.. ..|.+....... +...+.+ .+.
T Consensus 38 ~~~k~VIFDlDGTLvDS~~~~~~~a~~~~l~~~G~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 116 (286)
T PLN02779 38 ALPEALLFDCDGVLVETERDGHRVAFNDAFKEFGLRPVEWDVELYDELLNIGGGKERMTWY-FNENGWPTSTIEKAPKDE 116 (286)
T ss_pred cCCcEEEEeCceeEEccccHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHccCCChHHHHHH-HHHcCCCccccccCCccc
Confidence 457999999999999999 9999999999999998 32 3332221 144444333322 2222222 111
Q ss_pred ---HHHHH----HHHHHHHhhhc--cCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcC---CccccceEEe
Q 021360 73 ---HEFVN----EVYSMFSDHLC--KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHG---WNESFSVIVG 140 (313)
Q Consensus 73 ---~~~~~----~~~~~~~~~~~--~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~---~~~~f~~v~~ 140 (313)
++... ...+.+...+. .+.++||+.++|+.|++.|++++++||++...+...+ +... ....|+.+ +
T Consensus 117 e~~~~~~~~~~~~~~~~y~~~~~~~~~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l-~~~~~~~~~~~~~~v-~ 194 (286)
T PLN02779 117 EERKELVDSLHDRKTELFKELIESGALPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIV-NTLLGPERAQGLDVF-A 194 (286)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHhccccccCceEEE-e
Confidence 11112 22233333332 3589999999999999999999999999999888777 5443 23334444 7
Q ss_pred cCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCccccccccceeeccccccCccc
Q 021360 141 SDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEK 218 (313)
Q Consensus 141 ~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~~l~e~~~~~ 218 (313)
++++...||+|+.|..++++++++|++|++|||+.+|+.+|+++|+.++.+..+.........++.+++++.++....
T Consensus 195 ~~~~~~~KP~p~~~~~a~~~~~~~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~l~~ad~vi~~~~~l~~~~ 272 (286)
T PLN02779 195 GDDVPKKKPDPDIYNLAAETLGVDPSRCVVVEDSVIGLQAAKAAGMRCIVTKSSYTADEDFSGADAVFDCLGDVPLED 272 (286)
T ss_pred ccccCCCCCCHHHHHHHHHHhCcChHHEEEEeCCHHhHHHHHHcCCEEEEEccCCccccccCCCcEEECChhhcchhh
Confidence 788888999999999999999999999999999999999999999999999876543333346888899988876544
No 34
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.94 E-value=4.1e-25 Score=203.40 Aligned_cols=203 Identities=16% Similarity=0.215 Sum_probs=160.0
Q ss_pred cCccEEEEecCCccccChHHHHHHHHHHHHHcC------CCCChhhhhhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 021360 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYG------KEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVY 80 (313)
Q Consensus 7 ~~~k~vifDlDGTL~d~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (313)
+|+++|+||+||||+|+...+..++.+++++++ ...+.+.+....|.+..+.+..+....+.. ..++....+.
T Consensus 239 ~m~k~vIFDlDGTLiDs~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~~~~~-~~~~~~~~~~ 317 (459)
T PRK06698 239 EMLQALIFDMDGTLFQTDKILELSLDDTFDHLRSLQLWDTVTPIDKYREIMGVPLPKVWEALLPDHSLE-IREQTDAYFL 317 (459)
T ss_pred HhhhheeEccCCceecchhHHHHHHHHHHHHHhhhcccCCCCCHHHHHHHcCCChHHHHHHHhhhcchh-HHHHHHHHHH
Confidence 467999999999999999999999999998874 223445667778888888777776554332 1122223333
Q ss_pred HHHHhhh--ccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHH
Q 021360 81 SMFSDHL--CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAA 158 (313)
Q Consensus 81 ~~~~~~~--~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~ 158 (313)
+.+.... ...+++||+.++|+.|++.|++++++|+++...+...+ +++++..+|+.+++++++. .+|+|+.+..++
T Consensus 318 ~~~~~~~~~~~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l-~~~~l~~~f~~i~~~d~v~-~~~kP~~~~~al 395 (459)
T PRK06698 318 ERLIENIKSGKGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIV-SYYDLDQWVTETFSIEQIN-SLNKSDLVKSIL 395 (459)
T ss_pred HHhHHHHhhcCCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHH-HHCCcHhhcceeEecCCCC-CCCCcHHHHHHH
Confidence 3333322 35689999999999999999999999999999999888 8899999999999998874 467788999998
Q ss_pred HHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCccccccccceeecccccc
Q 021360 159 KRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDL 214 (313)
Q Consensus 159 ~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~~l~e~ 214 (313)
+++ ++++|++|||+.+|+.+|+++|+.++++.++.........++.++.++.++
T Consensus 396 ~~l--~~~~~v~VGDs~~Di~aAk~AG~~~I~v~~~~~~~~~~~~~d~~i~~l~el 449 (459)
T PRK06698 396 NKY--DIKEAAVVGDRLSDINAAKDNGLIAIGCNFDFAQEDELAQADIVIDDLLEL 449 (459)
T ss_pred Hhc--CcceEEEEeCCHHHHHHHHHCCCeEEEEeCCCCcccccCCCCEEeCCHHHH
Confidence 875 578999999999999999999999999988543333334578888888765
No 35
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.93 E-value=1.5e-24 Score=215.24 Aligned_cols=209 Identities=24% Similarity=0.361 Sum_probs=173.8
Q ss_pred cCccEEEEecCCccccChHHHHHHHHHHHHHcCCCCChhhhhhhcCCCHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHh
Q 021360 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLP-CAKHEFVNEVYSMFSD 85 (313)
Q Consensus 7 ~~~k~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 85 (313)
+++++|+|||||||+|+...+..++.++++++|.+++.+.+....|....+.+..+...+++. .+.++..+.+.+.+.+
T Consensus 73 ~~ikaVIFDlDGTLiDS~~~~~~a~~~~~~~~G~~it~e~~~~~~G~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 152 (1057)
T PLN02919 73 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFVPFMGTGEANFLGGVASVKGVKGFDPDAAKKRFFEIYLE 152 (1057)
T ss_pred CCCCEEEECCCCCeEeChHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999988887788888888777776666666553 3444444444444443
Q ss_pred hhc---cCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCc-cccceEEecCCCCCCCCChHHHHHHHHHc
Q 021360 86 HLC---KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN-ESFSVIVGSDEVRTGKPSPDIFLEAAKRL 161 (313)
Q Consensus 86 ~~~---~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~-~~f~~v~~~~~~~~~kp~~~~~~~~~~~~ 161 (313)
.+. ...++||+.++|+.|+++|++++++||+....++..+ +++++. .+|+.+++++++...||+|+.|..+++++
T Consensus 153 ~~~~~~~~~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L-~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~l 231 (1057)
T PLN02919 153 KYAKPNSGIGFPGALELITQCKNKGLKVAVASSADRIKVDANL-AAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKIL 231 (1057)
T ss_pred HhhhcccCccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHH-HHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHc
Confidence 331 2347999999999999999999999999999998888 888996 78999999999999999999999999999
Q ss_pred CCCCCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCcccc-ccccceeeccccccCc
Q 021360 162 NMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR-YTAADEVINSLLDLRP 216 (313)
Q Consensus 162 ~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~-~~~s~~ii~~l~e~~~ 216 (313)
+++|++|++|||+..|+++|+++|++++++..+...... ...++.+++++.++..
T Consensus 232 gv~p~e~v~IgDs~~Di~AA~~aGm~~I~v~~~~~~~~L~~~~a~~vi~~l~el~~ 287 (1057)
T PLN02919 232 GVPTSECVVIEDALAGVQAARAAGMRCIAVTTTLSEEILKDAGPSLIRKDIGNISL 287 (1057)
T ss_pred CcCcccEEEEcCCHHHHHHHHHcCCEEEEECCCCCHHHHhhCCCCEEECChHHCCH
Confidence 999999999999999999999999999999886433222 3467889999987643
No 36
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.93 E-value=1e-24 Score=179.97 Aligned_cols=178 Identities=28% Similarity=0.354 Sum_probs=137.4
Q ss_pred cEEEEecCCccccChHHHHHHHHHHHHHcCCCCChhhhhhh------------------cCCCHH----HHHHHHHHHhC
Q 021360 10 SCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKI------------------VGKTPL----EEAAIIVEDYG 67 (313)
Q Consensus 10 k~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~------------------~g~~~~----~~~~~~~~~~~ 67 (313)
|+|+||+||||+|+...+..++.++++++|...+....... .|.... ..+...+...+
T Consensus 1 k~viFDlDGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 80 (203)
T TIGR02252 1 KLITFDAVGTLLALKEPVGEVYCEIARKYGVEVSPDELEQAFRRAFKAMSEAFPNFGFSSGLTPQQWWQKLVRDTFGRAG 80 (203)
T ss_pred CeEEEecCCceeeeCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 58999999999999999999999999999988765432110 133332 22344444444
Q ss_pred CCCCHHHHHHHHHHHHHhhh--ccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCC
Q 021360 68 LPCAKHEFVNEVYSMFSDHL--CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR 145 (313)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~--~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~ 145 (313)
.. +.+.+.....+.+.... ....++||+.++|+.|++.|++++++||++.. +...+ +++++..+|+.++++++++
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l-~~~~l~~~fd~i~~s~~~~ 157 (203)
T TIGR02252 81 VP-DPESFEKIFEELYSYFATPEPWQVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLL-EALGLLEYFDFVVTSYEVG 157 (203)
T ss_pred CC-CchhHHHHHHHHHHHhcCCCcceeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHH-HHCCcHHhcceEEeecccC
Confidence 32 22233333333332221 24578999999999999999999999998865 45666 8889999999999999999
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEE
Q 021360 146 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVA 190 (313)
Q Consensus 146 ~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~-~Di~~a~~~G~~~i~ 190 (313)
..||+|+.+..+++++|++|++|++|||+. +|+.+|+++|+.+++
T Consensus 158 ~~KP~~~~~~~~~~~~~~~~~~~~~IgD~~~~Di~~A~~aG~~~i~ 203 (203)
T TIGR02252 158 AEKPDPKIFQEALERAGISPEEALHIGDSLRNDYQGARAAGWRALL 203 (203)
T ss_pred CCCCCHHHHHHHHHHcCCChhHEEEECCCchHHHHHHHHcCCeeeC
Confidence 999999999999999999999999999998 899999999998864
No 37
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.93 E-value=2.6e-25 Score=178.79 Aligned_cols=175 Identities=31% Similarity=0.531 Sum_probs=147.4
Q ss_pred EEEecCCccccChHHHHHHHHH-HHHHcCCCCChhhhhhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhccC
Q 021360 12 VILDLDGTLLNTDGMFSEVLKT-FLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKV 90 (313)
Q Consensus 12 vifDlDGTL~d~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (313)
|+||+||||+|+...+.+++.. +.+.++.+.+........+....+.+..++...+.. .....+.+.+. ......
T Consensus 1 iifD~dgtL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~ 76 (176)
T PF13419_consen 1 IIFDLDGTLVDTDPAIFRALQRLALEEFGLEISAEELRELFGKSYEEALERLLERFGID--PEEIQELFREY--NLESKL 76 (176)
T ss_dssp EEEESBTTTEEHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH--HHHHHHHHHHH--HHHGGE
T ss_pred cEEECCCCcEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHhhhccchh--HHHHHHHhhhh--hhhhcc
Confidence 7999999999999888888887 477888776666667777777777788887777543 22222222222 113678
Q ss_pred CCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEE
Q 021360 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (313)
Q Consensus 91 ~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~ 170 (313)
.++|++.++|+.|++.|++++++||.+...+...+ +++++..+|+.++++++.+..||+++.|+.++++++++|++|++
T Consensus 77 ~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l-~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~~~ 155 (176)
T PF13419_consen 77 QPYPGVRELLERLKAKGIPLVIVSNGSRERIERVL-ERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEEILF 155 (176)
T ss_dssp EESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHH-HHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGGEEE
T ss_pred chhhhhhhhhhhcccccceeEEeecCCcccccccc-cccccccccccccccchhhhhhhHHHHHHHHHHHcCCCcceEEE
Confidence 99999999999999999999999999999998888 88999999999999999999999999999999999999999999
Q ss_pred EecCHhhHHHHHHcCCeEEEe
Q 021360 171 IEDSVIGVVAGKAAGMEVVAV 191 (313)
Q Consensus 171 vgD~~~Di~~a~~~G~~~i~v 191 (313)
|||+..|+.+|+++|+.+++|
T Consensus 156 vgD~~~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 156 VGDSPSDVEAAKEAGIKTIWV 176 (176)
T ss_dssp EESSHHHHHHHHHTTSEEEEE
T ss_pred EeCCHHHHHHHHHcCCeEEeC
Confidence 999999999999999999875
No 38
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.93 E-value=2.1e-24 Score=180.13 Aligned_cols=107 Identities=15% Similarity=0.232 Sum_probs=98.9
Q ss_pred ccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCc
Q 021360 88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (313)
Q Consensus 88 ~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 167 (313)
....++||+.++|+.|+++|++++++||++...+...+ +++++..+|+.++++++++..||+|+.|..+++++|++|++
T Consensus 90 ~~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l-~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~ 168 (224)
T PRK14988 90 PRAVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKL-EHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAER 168 (224)
T ss_pred ccCCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHH-HHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHH
Confidence 56789999999999999999999999999999888888 88999999999999999999999999999999999999999
Q ss_pred EEEEecCHhhHHHHHHcCCeE-EEeCCCC
Q 021360 168 SLVIEDSVIGVVAGKAAGMEV-VAVPSLP 195 (313)
Q Consensus 168 ~i~vgD~~~Di~~a~~~G~~~-i~v~~~~ 195 (313)
|++|||+..|+.+|+++|+.+ +.+..+.
T Consensus 169 ~l~igDs~~di~aA~~aG~~~~~~v~~~~ 197 (224)
T PRK14988 169 TLFIDDSEPILDAAAQFGIRYCLGVTNPD 197 (224)
T ss_pred EEEEcCCHHHHHHHHHcCCeEEEEEeCCC
Confidence 999999999999999999984 5565533
No 39
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.92 E-value=3.7e-24 Score=180.61 Aligned_cols=202 Identities=16% Similarity=0.195 Sum_probs=144.6
Q ss_pred ccCccEEEEecCCccccChHHHHHHHHHHHHHcCCC------CChhhhh---hhcCC-----------CHHHHHHHHHHH
Q 021360 6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKE------WDGREKH---KIVGK-----------TPLEEAAIIVED 65 (313)
Q Consensus 6 ~~~~k~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~------~~~~~~~---~~~g~-----------~~~~~~~~~~~~ 65 (313)
..++|+|+||+||||+|+...+..+++++++.++.. +...... ...+. .....+..+++.
T Consensus 7 ~~~~k~iiFDlDGTL~D~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 86 (238)
T PRK10748 7 LGRISALTFDLDDTLYDNRPVILRTEQEALAFVQNYHPALRSFQNEDLQRLRQALREAEPEIYHDVTRWRWRAIEQAMLD 86 (238)
T ss_pred CCCceeEEEcCcccccCChHHHHHHHHHHHHHHHHhCcchhhCCHHHHHHHHHHHHHhCchhhCcHHHHHHHHHHHHHHH
Confidence 346799999999999999998888888777654211 1111111 10000 012334556677
Q ss_pred hCCCCCHHH-HHHHHHHHHHhhhccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCC
Q 021360 66 YGLPCAKHE-FVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEV 144 (313)
Q Consensus 66 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~ 144 (313)
++.+.+..+ ........+........++||+.++|+.|++. ++++++||++.. + +..|+..+|+.+++++++
T Consensus 87 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~-~~~gl~~~fd~i~~~~~~ 159 (238)
T PRK10748 87 AGLSAEEASAGADAAMINFAKWRSRIDVPQATHDTLKQLAKK-WPLVAITNGNAQ-----P-ELFGLGDYFEFVLRAGPH 159 (238)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHcC-CCEEEEECCCch-----H-HHCCcHHhhceeEecccC
Confidence 776532211 11222223333334578999999999999876 999999998765 3 668999999999999999
Q ss_pred CCCCCChHHHHHHHHHcCCCCCcEEEEecC-HhhHHHHHHcCCeEEEeCCCCCc----cccccccceeecccccc
Q 021360 145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDS-VIGVVAGKAAGMEVVAVPSLPKQ----THRYTAADEVINSLLDL 214 (313)
Q Consensus 145 ~~~kp~~~~~~~~~~~~~~~~~~~i~vgD~-~~Di~~a~~~G~~~i~v~~~~~~----~~~~~~s~~ii~~l~e~ 214 (313)
+..||+|+.|..+++++|++|++|++|||+ ..|+.+|+++|++++++...... ......++..+.+|.|+
T Consensus 160 ~~~KP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~i~v~~~~~~~~~~~~~~~~p~~~i~~l~el 234 (238)
T PRK10748 160 GRSKPFSDMYHLAAEKLNVPIGEILHVGDDLTTDVAGAIRCGMQACWINPENGDLMQTWDSRLLPHIEISRLASL 234 (238)
T ss_pred CcCCCcHHHHHHHHHHcCCChhHEEEEcCCcHHHHHHHHHCCCeEEEEcCCCccccccccccCCCCEEECCHHHH
Confidence 999999999999999999999999999999 59999999999999999874321 11113477778887765
No 40
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.91 E-value=3.6e-23 Score=169.82 Aligned_cols=173 Identities=16% Similarity=0.231 Sum_probs=133.3
Q ss_pred cEEEEecCCccccChHHHHHHHHHHHHHcC-CCCChhhhhhhcCCCHH--------HHHHHHHHHhC-----CCCCHHHH
Q 021360 10 SCVILDLDGTLLNTDGMFSEVLKTFLVKYG-KEWDGREKHKIVGKTPL--------EEAAIIVEDYG-----LPCAKHEF 75 (313)
Q Consensus 10 k~vifDlDGTL~d~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~g~~~~--------~~~~~~~~~~~-----~~~~~~~~ 75 (313)
++|+|||||||+|+...+..++..++++++ ...+.+....+.|.+.. ......+.... .....+.+
T Consensus 1 ~~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (197)
T TIGR01548 1 QALVLDMDGVMADVSQSYRRAIIDTVEHFGGVSVTHADIDHTKLAGNANNDWQLTHRLVVDGLNSASSERVRDAPTLEAV 80 (197)
T ss_pred CceEEecCceEEechHHHHHHHHHHHHHHcCCCCCHHHHHHHHHccCccCchHHHHHHHHHhhhcccchhccCCccHHHH
Confidence 379999999999999999999999999997 66776766666654321 11112222111 12233444
Q ss_pred HHHHHHHHHhhh----------ccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCC
Q 021360 76 VNEVYSMFSDHL----------CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR 145 (313)
Q Consensus 76 ~~~~~~~~~~~~----------~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~ 145 (313)
...+.+.+.... ....+.+++.++|+.|++.|++++++||++...++..+ +++|+..+|+.++++++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l-~~~gl~~~f~~~~~~~~~~ 159 (197)
T TIGR01548 81 TAQFQALYQGVGYYRDLATLGLIEDETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFL-TTHGLEILFPVQIWMEDCP 159 (197)
T ss_pred HHHHHHHHcCCcccccccchhhhccccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHH-HHcCchhhCCEEEeecCCC
Confidence 445555444311 12234556699999999999999999999999999888 8899999999999999887
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHc
Q 021360 146 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA 184 (313)
Q Consensus 146 ~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~ 184 (313)
. ||+|+.+..+++++|+++++|++|||+.+|+.+|+++
T Consensus 160 ~-KP~p~~~~~~~~~~~~~~~~~i~vGD~~~Di~aA~~a 197 (197)
T TIGR01548 160 P-KPNPEPLILAAKALGVEACHAAMVGDTVDDIITGRKA 197 (197)
T ss_pred C-CcCHHHHHHHHHHhCcCcccEEEEeCCHHHHHHHHhC
Confidence 6 9999999999999999999999999999999999874
No 41
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.91 E-value=7.8e-23 Score=165.86 Aligned_cols=175 Identities=30% Similarity=0.435 Sum_probs=125.4
Q ss_pred EEEEecCCccccChHHHHHHHHHHHHHcCCCCChhhhhhhcCCCHHHHHHHHHHHhCCCCCHHHHHHH------HHHHHH
Q 021360 11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNE------VYSMFS 84 (313)
Q Consensus 11 ~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 84 (313)
+++||+||||+++++.+.... . ................ .........+...++........... ....+.
T Consensus 1 ~vlFDlDgtLv~~~~~~~~~~-~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (183)
T TIGR01509 1 AILFDLDGVLVDTSSAIEKLV-N--REEFPLVPDELGVSAV-GKLELALRRWKEKYGRTMSAEDFYLLYENADIKQLFYD 76 (183)
T ss_pred CeeeccCCceechHHHHHHHH-H--HHhCCCCcHHHHHHHH-HHHHHHhhccccccCCCCCcHHHHHHHhHHHHHHHHHH
Confidence 489999999999988765521 1 1222222222221111 11222223333334444433332222 222333
Q ss_pred hhhcc--CCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcC
Q 021360 85 DHLCK--VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN 162 (313)
Q Consensus 85 ~~~~~--~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~ 162 (313)
..... .+++||+.++|+.|++.|++++++||++... ...+ .++++..+|+.++++++++..||+|+.++.++++++
T Consensus 77 ~~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~-~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~ 154 (183)
T TIGR01509 77 AILDEEKLKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLV-QELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLG 154 (183)
T ss_pred HHHhccCCccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHH-HhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcC
Confidence 32333 6899999999999999999999999999887 5444 558999999999999999999999999999999999
Q ss_pred CCCCcEEEEecCHhhHHHHHHcCCeEEEe
Q 021360 163 MEPSSSLVIEDSVIGVVAGKAAGMEVVAV 191 (313)
Q Consensus 163 ~~~~~~i~vgD~~~Di~~a~~~G~~~i~v 191 (313)
++|++|++|||+..|+.+|+++|+.++++
T Consensus 155 ~~~~~~~~vgD~~~di~aA~~~G~~~i~v 183 (183)
T TIGR01509 155 LKPEECLFVDDSPAGIEAAKAAGMHTVLV 183 (183)
T ss_pred CCcceEEEEcCCHHHHHHHHHcCCEEEeC
Confidence 99999999999999999999999998864
No 42
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.90 E-value=6e-23 Score=170.41 Aligned_cols=179 Identities=22% Similarity=0.263 Sum_probs=123.4
Q ss_pred ccEEEEecCCccccChHHHHHHHHHHHHHcCCCCChhhhhhhcCCCHH--------------HHHHHHHHHhCCCCCHHH
Q 021360 9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPL--------------EEAAIIVEDYGLPCAKHE 74 (313)
Q Consensus 9 ~k~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~--------------~~~~~~~~~~~~~~~~~~ 74 (313)
+|+|+||+||||+|+.. ....|.......|.+ .........+.... +....+.+.++.....+.
T Consensus 2 ik~viFDldGtL~d~~~-~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 79 (211)
T TIGR02247 2 IKAVIFDFGGVLLPSPG-VMRRWETERGLPGLK-DFIVTVNITGPDFNPWARTFERGELTAEAFDGLFRHEYGLRLGHDV 79 (211)
T ss_pred ceEEEEecCCceecCHH-HHHHHHHHcCCCCCc-cHHHHHHhcCCCCChHHHHHHcCCCCHHHHHHHHHHHhccccCCCc
Confidence 57999999999999976 555555544334432 12112222232211 112222222222111111
Q ss_pred HHHHHHHHHHhhh-ccCCCCchHHHHHHHHHHCCCCEEEEeCCchHH--HHHHHHhhcCCccccceEEecCCCCCCCCCh
Q 021360 75 FVNEVYSMFSDHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRAT--IESKISYQHGWNESFSVIVGSDEVRTGKPSP 151 (313)
Q Consensus 75 ~~~~~~~~~~~~~-~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~--~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~ 151 (313)
....+ +.... ....++||+.++|+.|++.|++++++||+.... ....+ ...++..+|+.++++++.+..||+|
T Consensus 80 ~~~~~---~~~~~~~~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~-~~~~l~~~fd~v~~s~~~~~~KP~p 155 (211)
T TIGR02247 80 RIAPV---FPLLYGENTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEAL-LPGDIMALFDAVVESCLEGLRKPDP 155 (211)
T ss_pred Cchhh---HHHHhccccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHh-hhhhhHhhCCEEEEeeecCCCCCCH
Confidence 11111 11111 246789999999999999999999999986543 22223 4467888999999999988899999
Q ss_pred HHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCC
Q 021360 152 DIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 152 ~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~ 193 (313)
+.|..+++++|++|++|++|||+..|+.+|+++|+.++.+.+
T Consensus 156 ~~~~~~~~~~g~~~~~~l~i~D~~~di~aA~~aG~~~i~v~~ 197 (211)
T TIGR02247 156 RIYQLMLERLGVAPEECVFLDDLGSNLKPAAALGITTIKVSD 197 (211)
T ss_pred HHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHcCCEEEEECC
Confidence 999999999999999999999999999999999999999876
No 43
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.90 E-value=1.3e-22 Score=166.67 Aligned_cols=178 Identities=16% Similarity=0.168 Sum_probs=131.3
Q ss_pred EEEEecCCccccChHHH-HHHHHHH----HHHcC--CCCChhhhhhhcC-CCHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 021360 11 CVILDLDGTLLNTDGMF-SEVLKTF----LVKYG--KEWDGREKHKIVG-KTPLEEAAIIVEDYGLPCAKHEFVNEVYSM 82 (313)
Q Consensus 11 ~vifDlDGTL~d~~~~~-~~~~~~~----~~~~g--~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (313)
+|+||+||||++.+... ...+... ...+. ............| ....+....+.+.++.+.+.+.+...+.+.
T Consensus 2 ~viFDldgvL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (199)
T PRK09456 2 LYIFDLGNVIVDIDFNRVLGVWSDLSRVPLATLKKRFTMGEAFHQHERGEISDEAFAEALCHEMALSLSYEQFAHGWQAV 81 (199)
T ss_pred EEEEeCCCccccCcHHHHHHHHHHhcCCCHHHHHHHHhcCcHHHHHhcCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 79999999999985421 1112111 00110 0000111112233 455666777888888766555544444332
Q ss_pred HHhhhccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcC
Q 021360 83 FSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN 162 (313)
Q Consensus 83 ~~~~~~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~ 162 (313)
+ ..++||+.++|+.|++.|++++++||++.......+....++..+|+.++++++++..||+|+.|+.+++++|
T Consensus 82 ~------~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~ 155 (199)
T PRK09456 82 F------VALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEG 155 (199)
T ss_pred H------hccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcC
Confidence 2 3589999999999999999999999999887665553345788899999999999999999999999999999
Q ss_pred CCCCcEEEEecCHhhHHHHHHcCCeEEEeCCC
Q 021360 163 MEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL 194 (313)
Q Consensus 163 ~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~ 194 (313)
++|++|++|||+..|+.+|+++|+.++++...
T Consensus 156 ~~p~~~l~vgD~~~di~aA~~aG~~~i~~~~~ 187 (199)
T PRK09456 156 FSAADAVFFDDNADNIEAANALGITSILVTDK 187 (199)
T ss_pred CChhHeEEeCCCHHHHHHHHHcCCEEEEecCC
Confidence 99999999999999999999999999998773
No 44
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.90 E-value=1.2e-22 Score=165.04 Aligned_cols=170 Identities=22% Similarity=0.257 Sum_probs=125.0
Q ss_pred cEEEEecCCccccChHHHHHHHHHHHH-----HcCCCCChhh-hh----hhcCCCHHHHHHHHHHHhCCCCCHHHHHHHH
Q 021360 10 SCVILDLDGTLLNTDGMFSEVLKTFLV-----KYGKEWDGRE-KH----KIVGKTPLEEAAIIVEDYGLPCAKHEFVNEV 79 (313)
Q Consensus 10 k~vifDlDGTL~d~~~~~~~~~~~~~~-----~~g~~~~~~~-~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (313)
++|+||+||||+|+...+..++.+.+. ++|++..... .. ...|... ..++.... .+.+.+...+
T Consensus 1 ~~viFDlDGTL~ds~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~g~~~----~~~~~~~~--~~~~~~~~~~ 74 (184)
T TIGR01993 1 DVWFFDLDNTLYPHSAGIFLQIDRNITEFVAARLKLSEEEARVLRKDYYREYGTTL----AGLMILHE--IDADEYLRYV 74 (184)
T ss_pred CeEEEeCCCCCCCCcccHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHchHH----HHHHHhhC--CCHHHHHHHH
Confidence 479999999999998777777776543 4454432111 11 1122221 12222222 2233332222
Q ss_pred HHHHHhhhccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCC----CCCChHHHH
Q 021360 80 YSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRT----GKPSPDIFL 155 (313)
Q Consensus 80 ~~~~~~~~~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~----~kp~~~~~~ 155 (313)
.+. .......++||+.++|+.|+ ++++++||++...+...+ +++|+..+|+.++++++.+. .||+|+.+.
T Consensus 75 ~~~--~~~~~~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l-~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~ 148 (184)
T TIGR01993 75 HGR--LPYEKLKPDPELRNLLLRLP---GRKIIFTNGDRAHARRAL-NRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYE 148 (184)
T ss_pred hcc--CCHHhCCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHH-HHcCcHhhhCeEEEeecccCccCCCCCCHHHHH
Confidence 221 11235679999999999997 579999999999998888 88999999999999998876 599999999
Q ss_pred HHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEe
Q 021360 156 EAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 191 (313)
Q Consensus 156 ~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v 191 (313)
.+++++|++|++|++|||+..|+.+|+++|+++++|
T Consensus 149 ~~~~~~~~~~~~~l~vgD~~~di~aA~~~G~~~i~v 184 (184)
T TIGR01993 149 KALREAGVDPERAIFFDDSARNIAAAKALGMKTVLV 184 (184)
T ss_pred HHHHHhCCCccceEEEeCCHHHHHHHHHcCCEEeeC
Confidence 999999999999999999999999999999998865
No 45
>KOG3110 consensus Riboflavin kinase [Coenzyme transport and metabolism]
Probab=99.89 E-value=1.1e-23 Score=151.32 Aligned_cols=85 Identities=49% Similarity=0.922 Sum_probs=72.9
Q ss_pred cCCCCCCccccccceeeeecCCCcccCccccccCCCccccccCCCCCeEEEEEEEecCCceeEEEEEecCCccccCCcce
Q 021360 229 EGTLPSEPWYIGGPVVKGLGRGSKVLGIPTANLSTEGYSDVLSEHPSGVYFGWAGLSTRGVYKMVMSIGWNPYFDNAEKT 308 (313)
Q Consensus 229 a~~~lg~p~~~~g~v~~g~~~g~~~lg~ptan~~~~~~~~~~p~~~~gvy~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~ 308 (313)
++.+.-.||...|+||+|++||+++||+||||+.......++-.+..|||.+|+.+..+..|++|+||||||.|.|+.+|
T Consensus 5 ~~~~~~~P~~~~g~VVrGFGRGskeLGiPTAN~~~~~v~~l~~~l~~GvYfG~A~v~~~~v~kMvmSIGwNP~Y~N~~Kt 84 (153)
T KOG3110|consen 5 AQPMSPLPLFFGGEVVRGFGRGSKELGIPTANFPENVVPKLPEDLPSGVYFGWAHVDKGDVFKMVMSIGWNPYYKNKKKT 84 (153)
T ss_pred cccCCCCCEEecCeEEEecCCCccccCCccCCCCHHHHhcccccCCCceEEEeeeecCCCceeEEEEcccCcccCCcccc
Confidence 44556679999999999999999999999999987654344434457999999999657799999999999999999999
Q ss_pred EeecC
Q 021360 309 IVSLT 313 (313)
Q Consensus 309 ~e~~~ 313 (313)
+|+||
T Consensus 85 ~E~hl 89 (153)
T KOG3110|consen 85 MELHL 89 (153)
T ss_pred eeeee
Confidence 99996
No 46
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.89 E-value=1.2e-21 Score=164.60 Aligned_cols=124 Identities=28% Similarity=0.405 Sum_probs=108.7
Q ss_pred cCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcE
Q 021360 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 168 (313)
Q Consensus 89 ~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 168 (313)
..+++|++.+.|+.++.. ++++++||+........+ +++|+.++||.++++++++..||+|++|+.+++++|++|++|
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l-~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~ 174 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNGARPHQERKL-RQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEA 174 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHH-HHcCChhhhheEEEecccccCCCCcHHHHHHHHHcCCCcceE
Confidence 478999999999999999 999999999888888888 888999999999999999999999999999999999999999
Q ss_pred EEEecCH-hhHHHHHHcCCeEEEeCCCCCcc-ccccccceeecccccc
Q 021360 169 LVIEDSV-IGVVAGKAAGMEVVAVPSLPKQT-HRYTAADEVINSLLDL 214 (313)
Q Consensus 169 i~vgD~~-~Di~~a~~~G~~~i~v~~~~~~~-~~~~~s~~ii~~l~e~ 214 (313)
++|||+. +|+.+|+++||++++++...... .....++..+.++.++
T Consensus 175 l~VgD~~~~di~gA~~~G~~~vwi~~~~~~~~~~~~~~~~~i~~l~~l 222 (229)
T COG1011 175 LFVGDSLENDILGARALGMKTVWINRGGKPLPDALEAPDYEISSLAEL 222 (229)
T ss_pred EEECCChhhhhHHHHhcCcEEEEECCCCCCCCCCccCCceEEcCHHHH
Confidence 9999999 68899999999999998854321 1113577777777664
No 47
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.88 E-value=2.6e-21 Score=152.52 Aligned_cols=154 Identities=25% Similarity=0.405 Sum_probs=120.5
Q ss_pred EEEEecCCccccChHHHHHHHHHHHHHcCCCCChhhhhhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhccC
Q 021360 11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKV 90 (313)
Q Consensus 11 ~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (313)
+|+||+||||+|+...+..++.+++++++. +.+.+....|...... ..... .+.+ +.......
T Consensus 1 ~iifD~DGTL~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~-~~~~~-------------~~~~-~~~~~~~~ 63 (154)
T TIGR01549 1 AILFDIDGTLVDSSFAIRRAFEETLEEFGE--DFQALKALRGLAEELL-YRIAT-------------SFEE-LLGYDAEE 63 (154)
T ss_pred CeEecCCCcccccHHHHHHHHHHHHHHhcc--cHHHHHHHHccChHHH-HHHHH-------------HHHH-HhCcchhh
Confidence 489999999999999999999999999875 3333333333322211 11111 1111 11112345
Q ss_pred CCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEE
Q 021360 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (313)
Q Consensus 91 ~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~ 170 (313)
..+||+.++|+.|++.|++++++|+++...+...+ +++ +..+|+.++++++.. .||+|+.+..+++++++++ +|++
T Consensus 64 ~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~-~~~-l~~~f~~i~~~~~~~-~Kp~~~~~~~~~~~~~~~~-~~l~ 139 (154)
T TIGR01549 64 AYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLL-RKH-LGDYFDLILGSDEFG-AKPEPEIFLAALESLGLPP-EVLH 139 (154)
T ss_pred eeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHH-HHH-HHhcCcEEEecCCCC-CCcCHHHHHHHHHHcCCCC-CEEE
Confidence 67799999999999999999999999999988877 655 788899999998887 9999999999999999999 9999
Q ss_pred EecCHhhHHHHHHcC
Q 021360 171 IEDSVIGVVAGKAAG 185 (313)
Q Consensus 171 vgD~~~Di~~a~~~G 185 (313)
|||+..|+.+|+++|
T Consensus 140 iGDs~~Di~aa~~aG 154 (154)
T TIGR01549 140 VGDNLNDIEGARNAG 154 (154)
T ss_pred EeCCHHHHHHHHHcc
Confidence 999999999999987
No 48
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.88 E-value=1.1e-21 Score=161.12 Aligned_cols=187 Identities=14% Similarity=0.167 Sum_probs=126.1
Q ss_pred CccEEEEecCCccccChHHHHHHHHHHHHHcCCCCChhhhhhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh-h
Q 021360 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD-H 86 (313)
Q Consensus 8 ~~k~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 86 (313)
|+|+|+||+||||+|+.. .+.++++++|.+. +......+......... .++. +.......+...... .
T Consensus 1 m~k~viFDlDGTLiD~~~----~~~~~~~~~g~~~--~~~~~~~g~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~ 69 (197)
T PHA02597 1 MKPTILTDVDGVLLSWQS----GLPYFAQKYNIPT--DHILKMIQDERFRDPGE---LFGC--DQELAKKLIEKYNNSDF 69 (197)
T ss_pred CCcEEEEecCCceEchhh----ccHHHHHhcCCCH--HHHHHHHhHhhhcCHHH---Hhcc--cHHHHHHHhhhhhHHHH
Confidence 478999999999999543 4567777888643 34444434322222212 1221 222222222222212 2
Q ss_pred hccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCcc----ccceEEecCCCCCCCCChHHHHHHHHHcC
Q 021360 87 LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE----SFSVIVGSDEVRTGKPSPDIFLEAAKRLN 162 (313)
Q Consensus 87 ~~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~----~f~~v~~~~~~~~~kp~~~~~~~~~~~~~ 162 (313)
.....++||+.++|+.|++. ++++++|+.+.......+ +.+++.. +|+.++++++ .+|+|+.+..+++++|
T Consensus 70 ~~~~~~~pG~~e~L~~L~~~-~~~~i~Tn~~~~~~~~~~-~~~~l~~~f~~~f~~i~~~~~---~~~kp~~~~~a~~~~~ 144 (197)
T PHA02597 70 IRYLSAYDDALDVINKLKED-YDFVAVTALGDSIDALLN-RQFNLNALFPGAFSEVLMCGH---DESKEKLFIKAKEKYG 144 (197)
T ss_pred HHhccCCCCHHHHHHHHHhc-CCEEEEeCCccchhHHHH-hhCCHHHhCCCcccEEEEecc---CcccHHHHHHHHHHhC
Confidence 24577999999999999987 578888887665544344 5666654 4567777665 3667899999999999
Q ss_pred CCCCcEEEEecCHhhHHHHHHc--CCeEEEeCCCCCccccccccceeecccccc
Q 021360 163 MEPSSSLVIEDSVIGVVAGKAA--GMEVVAVPSLPKQTHRYTAADEVINSLLDL 214 (313)
Q Consensus 163 ~~~~~~i~vgD~~~Di~~a~~~--G~~~i~v~~~~~~~~~~~~s~~ii~~l~e~ 214 (313)
++++++|||+..|+.+|+++ |++++.+.++.. .......+++.++.|+
T Consensus 145 --~~~~v~vgDs~~di~aA~~a~~Gi~~i~~~~~~~--~~~~~~~~~~~~~~~~ 194 (197)
T PHA02597 145 --DRVVCFVDDLAHNLDAAHEALSQLPVIHMLRGER--DHIPKLAHRVKSWNDI 194 (197)
T ss_pred --CCcEEEeCCCHHHHHHHHHHHcCCcEEEecchhh--ccccchhhhhccHHHH
Confidence 88999999999999999999 999999988654 2223456777777664
No 49
>PRK07143 hypothetical protein; Provisional
Probab=99.88 E-value=4.6e-22 Score=168.41 Aligned_cols=103 Identities=13% Similarity=-0.002 Sum_probs=84.4
Q ss_pred hHHHHHHcCCeEEEeCCCCCccccccccceeeccccccCccccCCCCccccccCCCCCCccccccceeeeecCCCcccCc
Q 021360 177 GVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIGGPVVKGLGRGSKVLGI 256 (313)
Q Consensus 177 Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~~l~e~~~~~~~~~~~~~~~a~~~lg~p~~~~g~v~~g~~~g~~~lg~ 256 (313)
|+...++.+-.+..++... ......||+.|++.|.+|+++. |+.+|||||.++|+|+||
T Consensus 126 ~~~~L~~~~~~v~~v~~~~-~~g~~ISST~IR~~l~~G~i~~----------A~~lLGr~y~i~G~V~~G---------- 184 (279)
T PRK07143 126 NADDLKEYFPNVHIVEILK-INQQKISTSLLKEFIEFGDIEL----------LNSLLLYNYSISITINKN---------- 184 (279)
T ss_pred CHHHHHHhCCcEEEeCCEE-cCCcEEcHHHHHHHHHcCCHHH----------HHHHcCCCcEEEEEEECC----------
Confidence 4555555532345555532 3344568899999999999999 999999999999999988
Q ss_pred cccccCCCccccccCCCCCeEEEEEEEecCCceeEEEEEecCCccccCCcceEeecC
Q 021360 257 PTANLSTEGYSDVLSEHPSGVYFGWAGLSTRGVYKMVMSIGWNPYFDNAEKTIVSLT 313 (313)
Q Consensus 257 ptan~~~~~~~~~~p~~~~gvy~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~e~~~ 313 (313)
|||.+++. +++| +.||||+++.+ ++.+|+||+|||.||| +|+||
T Consensus 185 --aNl~~~~~-~~~P--~~GVYa~~v~~-~~~~y~~v~niG~~PT-------iE~hi 228 (279)
T PRK07143 185 --FEFTYPQN-IIKL--HAGIYLAYVVI-NNFKYHGILKINFNNK-------NKIKF 228 (279)
T ss_pred --eEeCCCcC-cCCC--CCcEEEEEEEE-CCEEEEEEEEecCCce-------EEEEE
Confidence 99998875 7889 79999999998 7788999999999999 89986
No 50
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.87 E-value=5.4e-22 Score=159.84 Aligned_cols=161 Identities=18% Similarity=0.291 Sum_probs=123.7
Q ss_pred EEEEecCCccccChHHHHHHHHHHHHHcCCC---CC-----hhhhhhhcCC--CHHH----HHHHHHHHhCCCCCHHHHH
Q 021360 11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKE---WD-----GREKHKIVGK--TPLE----EAAIIVEDYGLPCAKHEFV 76 (313)
Q Consensus 11 ~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~---~~-----~~~~~~~~g~--~~~~----~~~~~~~~~~~~~~~~~~~ 76 (313)
+|+||+||||+|+...+..++..+++..+.. ++ ........+. ...+ .+..+.+.++.+.+.+ .
T Consensus 1 ~viFD~DGTL~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~- 78 (175)
T TIGR01493 1 AMVFDVYGTLVDVHGGVRACLAAIAPEGGAFSDLWRAKQQEYSWRRSLMGDRRAFPEDTVRALRYIADRLGLDAEPK-Y- 78 (175)
T ss_pred CeEEecCCcCcccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHcCCCCCHH-H-
Confidence 4899999999999998888888877664421 11 1111222221 1112 5667777787765443 1
Q ss_pred HHHHHHHHhhhccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHH
Q 021360 77 NEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLE 156 (313)
Q Consensus 77 ~~~~~~~~~~~~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~ 156 (313)
.+.+...+....++||+.++|+ +++++||++...+...+ +++++..+|+.++++++++..||+|+.|..
T Consensus 79 ---~~~~~~~~~~~~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l-~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~ 147 (175)
T TIGR01493 79 ---GERLRDAYKNLPPWPDSAAALA-------RVAILSNASHWAFDQFA-QQAGLPWYFDRAFSVDTVRAYKPDPVVYEL 147 (175)
T ss_pred ---HHHHHHHHhcCCCCCchHHHHH-------HHhhhhCCCHHHHHHHH-HHCCCHHHHhhhccHhhcCCCCCCHHHHHH
Confidence 2223333356789999999998 36899999999998888 889999999999999998999999999999
Q ss_pred HHHHcCCCCCcEEEEecCHhhHHHHHHc
Q 021360 157 AAKRLNMEPSSSLVIEDSVIGVVAGKAA 184 (313)
Q Consensus 157 ~~~~~~~~~~~~i~vgD~~~Di~~a~~~ 184 (313)
+++++|++|++|++|||+..|+.+|+++
T Consensus 148 ~~~~~~~~p~~~l~vgD~~~Di~~A~~~ 175 (175)
T TIGR01493 148 VFDTVGLPPDRVLMVAAHQWDLIGARKF 175 (175)
T ss_pred HHHHHCCCHHHeEeEecChhhHHHHhcC
Confidence 9999999999999999999999999864
No 51
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.84 E-value=4.7e-20 Score=153.97 Aligned_cols=186 Identities=19% Similarity=0.193 Sum_probs=124.9
Q ss_pred cccCccEEEEecCCccccChHHHHHHHHHHHHHcCCCCChhhh-hhh-cC-CCHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 021360 5 LKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREK-HKI-VG-KTPLEEAAIIVEDYGLPCAKHEFVNEVYS 81 (313)
Q Consensus 5 ~~~~~k~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~-~~~-~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (313)
+.+++++++||+||||++++. +.++++.+|........ ... .| ....+........+. .... +
T Consensus 10 ~~~~~k~iiFD~DGTL~~~~~-----~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~-~------- 75 (219)
T TIGR00338 10 LLRSKKLVVFDMDSTLINAET-----IDEIAKIAGVEEEVSEITERAMRGELDFKASLRERVALLK-GLPV-E------- 75 (219)
T ss_pred hhccCCEEEEeCcccCCCchH-----HHHHHHHhCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhC-CCCH-H-------
Confidence 456789999999999999853 45556666654322222 111 11 122222222222221 1111 1
Q ss_pred HHHhhhccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEE-------ecC---CCCCCCCCh
Q 021360 82 MFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIV-------GSD---EVRTGKPSP 151 (313)
Q Consensus 82 ~~~~~~~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~-------~~~---~~~~~kp~~ 151 (313)
.+.......+++||+.++|+.|++.|++++++|++....+...+ +.+++..+|...+ .+. ....++|++
T Consensus 76 ~~~~~~~~~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 154 (219)
T TIGR00338 76 LLKEVRENLPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVK-DKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKG 154 (219)
T ss_pred HHHHHHhcCCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHH-HHcCCCceEeeEEEEECCEEEEEecCcccCCcccH
Confidence 22222345679999999999999999999999999999888888 7889877774322 111 112356789
Q ss_pred HHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCccccccccceeec
Q 021360 152 DIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVIN 209 (313)
Q Consensus 152 ~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~ 209 (313)
..++.+++++++++++|++|||+.+|+.+|+.+|+.+.+ .. .......++.++.
T Consensus 155 ~~~~~~~~~~~~~~~~~i~iGDs~~Di~aa~~ag~~i~~-~~---~~~~~~~a~~~i~ 208 (219)
T TIGR00338 155 KTLLILLRKEGISPENTVAVGDGANDLSMIKAAGLGIAF-NA---KPKLQQKADICIN 208 (219)
T ss_pred HHHHHHHHHcCCCHHHEEEEECCHHHHHHHHhCCCeEEe-CC---CHHHHHhchhccC
Confidence 999999999999999999999999999999999998654 32 2222335666655
No 52
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.84 E-value=5e-20 Score=150.74 Aligned_cols=186 Identities=26% Similarity=0.322 Sum_probs=138.7
Q ss_pred ccCccEEEEecCCccccChHHHHHHHHHHHHHcCCCCChhhhhhh------------------cC-CCHHHHHHHHHHHh
Q 021360 6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKI------------------VG-KTPLEEAAIIVEDY 66 (313)
Q Consensus 6 ~~~~k~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~------------------~g-~~~~~~~~~~~~~~ 66 (313)
.+.+|+|+||++|||+...+.....+..+.+.+|...+....... .| ....++...+....
T Consensus 4 ~~~iravtfD~~~tLl~~~~~~~~~y~~i~~~~gl~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~l~~~~ww~~lv~~~ 83 (237)
T KOG3085|consen 4 LMRIRAVTFDAGGTLLATLPPVMEVYCEIAEAYGLEYDDSLIETIFRKDFKKMSEKGPFFGLYSGELTLSQWWPKLVEST 83 (237)
T ss_pred ccceEEEEEeCCCceeecCCccHHHHHHHHHHhCCCCCHHHHhHhhhHHHHhhcccCCcccccCCcccHHHHHHHHHHHH
Confidence 467899999999999998888888899999999988554433211 12 23444444333322
Q ss_pred -CCCCC--HHHHHHHH-HHHHHhh-hccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEec
Q 021360 67 -GLPCA--KHEFVNEV-YSMFSDH-LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS 141 (313)
Q Consensus 67 -~~~~~--~~~~~~~~-~~~~~~~-~~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~ 141 (313)
+.... .++....+ ...+... .......+++.++++.++++|..+.++||.+...- ..+ ..+++..+||.++.+
T Consensus 84 f~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r~~-~~l-~~~~l~~~fD~vv~S 161 (237)
T KOG3085|consen 84 FGKAGIDYEEELLENFSFRLFSTFAPSAWKYLDGMQELLQKLRKKGTILGIISNFDDRLR-LLL-LPLGLSAYFDFVVES 161 (237)
T ss_pred hccccchhHHHHHhhhhhheeccccccCceeccHHHHHHHHHHhCCeEEEEecCCcHHHH-HHh-hccCHHHhhhhhhhh
Confidence 22111 11111111 1111111 12456677888999999999988999999887654 445 778999999999999
Q ss_pred CCCCCCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEeCC
Q 021360 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 142 ~~~~~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~-~Di~~a~~~G~~~i~v~~ 193 (313)
...+..||+|.+|+.++++++++|++|++|||+. ||+++|+++||.++.+..
T Consensus 162 ~e~g~~KPDp~If~~al~~l~v~Pee~vhIgD~l~nD~~gA~~~G~~ailv~~ 214 (237)
T KOG3085|consen 162 CEVGLEKPDPRIFQLALERLGVKPEECVHIGDLLENDYEGARNLGWHAILVDN 214 (237)
T ss_pred hhhccCCCChHHHHHHHHHhCCChHHeEEecCccccccHhHHHcCCEEEEEcc
Confidence 9999999999999999999999999999999999 799999999999999986
No 53
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.82 E-value=3.7e-19 Score=146.48 Aligned_cols=176 Identities=14% Similarity=0.084 Sum_probs=114.6
Q ss_pred CccEEEEecCCccccChHHHHHHHHHHHHHcCCCCChhhh--hhhcCCCHH-HHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 021360 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREK--HKIVGKTPL-EEAAIIVEDYGLPCAKHEFVNEVYSMFS 84 (313)
Q Consensus 8 ~~k~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (313)
|+|+|+||+||||+++...+ ..+...++........ ....|.... +............. .. ...+.+.
T Consensus 3 ~~k~viFD~DGTLid~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~ 73 (201)
T TIGR01491 3 MIKLIIFDLDGTLTDVMSSW----EYLHRRLETCGLAKKNAELFFSGRISYEEWARLDASLWKRRS--GR---LRREEVE 73 (201)
T ss_pred cceEEEEeCCCCCcCCccHH----HHHHHHhCchHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcc--cC---CCHHHHH
Confidence 68899999999999976443 2233334433111111 112222221 11111111110000 00 0111122
Q ss_pred hhhccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCC----------CChHHH
Q 021360 85 DHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGK----------PSPDIF 154 (313)
Q Consensus 85 ~~~~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~k----------p~~~~~ 154 (313)
..+....++||+.++|+.|++.|++++++|++....++..+ +++|+..+|...+..++.+..+ ++++.+
T Consensus 74 ~~~~~~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l-~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~ 152 (201)
T TIGR01491 74 EIFKEISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVA-EKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAV 152 (201)
T ss_pred HHHHhCCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH-HHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHH
Confidence 23345689999999999999999999999999999999888 8889877776555544333222 334678
Q ss_pred HHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCC
Q 021360 155 LEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 155 ~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~ 193 (313)
+.+++++++++++|++|||+.+|+.+++.+|+.+++.+.
T Consensus 153 ~~~~~~~~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~~~ 191 (201)
T TIGR01491 153 ERLKRELNPSLTETVAVGDSKNDLPMFEVADISISLGDE 191 (201)
T ss_pred HHHHHHhCCCHHHEEEEcCCHhHHHHHHhcCCeEEECCC
Confidence 888899999999999999999999999999998766554
No 54
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.81 E-value=7.2e-18 Score=139.18 Aligned_cols=184 Identities=13% Similarity=0.083 Sum_probs=123.9
Q ss_pred ccEEEEecCCccccChHHH-------HHHHHHHHHHcCCCCChhhhhhhcCCC-HHHHHHHHHHHhCCCCCHHHHHH---
Q 021360 9 MSCVILDLDGTLLNTDGMF-------SEVLKTFLVKYGKEWDGREKHKIVGKT-PLEEAAIIVEDYGLPCAKHEFVN--- 77 (313)
Q Consensus 9 ~k~vifDlDGTL~d~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~--- 77 (313)
+++|++|+.||+.+-.-.. .+.+..+++..........+....+.. .......+......+.....+.+
T Consensus 1 ~~~~l~diegt~~~isfv~~~lfpy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~k~~~lk~lqg 80 (220)
T TIGR01691 1 IKNVLLDIEGTTGSISFVHDVLFPYAASRLESFVNDNYESTIVENLRELGKTPEELILLRKLHAEMDKDRKATPLKTLQG 80 (220)
T ss_pred CCEEEEecCCCcccHHHHHhhhhHHHHHHHHHHHHHhCCCHHHHHHHHhccCCcHHHHHHHHHHHHHcCCCcchHHHHHH
Confidence 4789999999999763222 222333333322111122222222221 13333344444444433333322
Q ss_pred H-HHHHHHhhhccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhc---CCccccceEEecCCCCCCCCChHH
Q 021360 78 E-VYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQH---GWNESFSVIVGSDEVRTGKPSPDI 153 (313)
Q Consensus 78 ~-~~~~~~~~~~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~---~~~~~f~~v~~~~~~~~~kp~~~~ 153 (313)
. +.+.|........++||+.++|++|++.|++++++||++....+..+ ++. ++..+|+.++.. ....||+|+.
T Consensus 81 ~iw~~~Y~~~~~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~-~~~~~~~L~~~f~~~fd~--~~g~KP~p~~ 157 (220)
T TIGR01691 81 LIWRQGYESGELTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLF-GHSDAGNLTPYFSGYFDT--TVGLKTEAQS 157 (220)
T ss_pred HHHHHHHhcCCcccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-hhccccchhhhcceEEEe--CcccCCCHHH
Confidence 2 33334333345679999999999999999999999999988777666 554 566677776643 2347999999
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCCCC
Q 021360 154 FLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 195 (313)
Q Consensus 154 ~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~ 195 (313)
|..+++++|++|++|++|||+..|+.+|+++|+.++++.+..
T Consensus 158 y~~i~~~lgv~p~e~lfVgDs~~Di~AA~~AG~~ti~v~r~g 199 (220)
T TIGR01691 158 YVKIAGQLGSPPREILFLSDIINELDAARKAGLHTGQLVRPG 199 (220)
T ss_pred HHHHHHHhCcChhHEEEEeCCHHHHHHHHHcCCEEEEEECCC
Confidence 999999999999999999999999999999999999987743
No 55
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.81 E-value=4.7e-19 Score=142.52 Aligned_cols=123 Identities=24% Similarity=0.314 Sum_probs=95.8
Q ss_pred cCCCCchHHHHHHHHHHCCCCEEEEeCCch---------------HHHHHHHHhhcCCccccceEEec-----------C
Q 021360 89 KVKALPGANRLIKHLSCHGVPMALASNSHR---------------ATIESKISYQHGWNESFSVIVGS-----------D 142 (313)
Q Consensus 89 ~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~---------------~~~~~~l~~~~~~~~~f~~v~~~-----------~ 142 (313)
...++||+.++|+.|++.|++++++||++. ..+...+ ...++. |+.++.+ +
T Consensus 24 ~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~--~~~i~~~~~~~~~~~~~~~ 100 (176)
T TIGR00213 24 NFEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSL-AERDVD--LDGIYYCPHHPEGVEEFRQ 100 (176)
T ss_pred HeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHH-HHcCCC--ccEEEECCCCCcccccccC
Confidence 346899999999999999999999999984 2233334 444444 5655443 2
Q ss_pred CCCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeE-EEeCCCCCcccc-ccccceeecccccc
Q 021360 143 EVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEV-VAVPSLPKQTHR-YTAADEVINSLLDL 214 (313)
Q Consensus 143 ~~~~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~-i~v~~~~~~~~~-~~~s~~ii~~l~e~ 214 (313)
+...+||+|+.+..+++++++++++|+||||+..|+.+|+++|+++ +++..+...... ...++.+++++.++
T Consensus 101 ~~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG~~~~i~v~~g~~~~~~~~~~ad~~i~~~~el 174 (176)
T TIGR00213 101 VCDCRKPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKVKTNVLVRTGKPITPEAENIADWVLNSLADL 174 (176)
T ss_pred CCCCCCCCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCCCcEEEEEecCCcccccccccCCEEeccHHHh
Confidence 4557899999999999999999999999999999999999999998 788775432222 23488888888765
No 56
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.80 E-value=3.2e-19 Score=139.14 Aligned_cols=102 Identities=27% Similarity=0.406 Sum_probs=84.1
Q ss_pred CCCCchHHHHHHHHHHCCCCEEEEeCCch---------------HHHHHHHHhhcCCccccceEEe----cCCCCCCCCC
Q 021360 90 VKALPGANRLIKHLSCHGVPMALASNSHR---------------ATIESKISYQHGWNESFSVIVG----SDEVRTGKPS 150 (313)
Q Consensus 90 ~~~~pgv~e~l~~l~~~g~~~~i~s~~~~---------------~~~~~~l~~~~~~~~~f~~v~~----~~~~~~~kp~ 150 (313)
..++||+.++|+.|++.|++++++||.+. ..+...+ +++++... ..+++ ++.....||+
T Consensus 26 ~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~l~~~-~~~~~~~~~~~~~~~~KP~ 103 (147)
T TIGR01656 26 WQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELL-RQLGVAVD-GVLFCPHHPADNCSCRKPK 103 (147)
T ss_pred eEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHH-HhCCCcee-EEEECCCCCCCCCCCCCCC
Confidence 36899999999999999999999999873 3444555 67777521 11222 3445568999
Q ss_pred hHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCC
Q 021360 151 PDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~ 193 (313)
|+.++.+++++++++++|++|||+..|+.+|+++|+++++++.
T Consensus 104 ~~~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~~v~i~~ 146 (147)
T TIGR01656 104 PGLILEALKRLGVDASRSLVVGDRLRDLQAARNAGLAAVLLVD 146 (147)
T ss_pred HHHHHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCCEEEecC
Confidence 9999999999999999999999999999999999999999875
No 57
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.80 E-value=8.2e-19 Score=141.90 Aligned_cols=122 Identities=29% Similarity=0.344 Sum_probs=95.4
Q ss_pred CCCCchHHHHHHHHHHCCCCEEEEeCCch---------------HHHHHHHHhhcCCccccceEEec-----CCCCCCCC
Q 021360 90 VKALPGANRLIKHLSCHGVPMALASNSHR---------------ATIESKISYQHGWNESFSVIVGS-----DEVRTGKP 149 (313)
Q Consensus 90 ~~~~pgv~e~l~~l~~~g~~~~i~s~~~~---------------~~~~~~l~~~~~~~~~f~~v~~~-----~~~~~~kp 149 (313)
+.++||+.++|+.|++.|++++++||++. +.+...+ +++++ .|+.++.+ +++...||
T Consensus 28 ~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l-~~~g~--~f~~i~~~~~~~~~~~~~~KP 104 (181)
T PRK08942 28 WIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSL-ADRGG--RLDGIYYCPHHPEDGCDCRKP 104 (181)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHH-HHcCC--ccceEEECCCCCCCCCcCCCC
Confidence 46899999999999999999999999863 2233344 45565 36766643 34568999
Q ss_pred ChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCcccc-cccc--ceeecccccc
Q 021360 150 SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR-YTAA--DEVINSLLDL 214 (313)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~-~~~s--~~ii~~l~e~ 214 (313)
+|+.+..+++++|+++++|++|||+.+|+.+|+++|+.++.+..+...... ...+ +.++.++.++
T Consensus 105 ~p~~~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~~i~v~~g~~~~~~~~~~~~~~~ii~~l~el 172 (181)
T PRK08942 105 KPGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTPVLVRTGKGVTTLAEGAAPGTWVLDSLADL 172 (181)
T ss_pred CHHHHHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCeEEEEcCCCCchhhhcccCCCceeecCHHHH
Confidence 999999999999999999999999999999999999999999775432211 2234 6777777664
No 58
>PLN02954 phosphoserine phosphatase
Probab=99.79 E-value=5e-18 Score=142.18 Aligned_cols=192 Identities=18% Similarity=0.185 Sum_probs=126.1
Q ss_pred cCccEEEEecCCccccChHHHHHHHHHHHHHcCCCCChhhh-hhhcC--CCHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 021360 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREK-HKIVG--KTPLEEAAIIVEDYGLPCAKHEFVNEVYSMF 83 (313)
Q Consensus 7 ~~~k~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (313)
+++|+|+||+||||++++. +..+++++|........ ..+.+ ....+.+...+..... .. +.+.+.+
T Consensus 10 ~~~k~viFDfDGTL~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~----~~~~~~~ 78 (224)
T PLN02954 10 RSADAVCFDVDSTVCVDEG-----IDELAEFCGAGEAVAEWTAKAMGGSVPFEEALAARLSLFKP--SL----SQVEEFL 78 (224)
T ss_pred ccCCEEEEeCCCcccchHH-----HHHHHHHcCChHHHHHHHHHHHCCCCCHHHHHHHHHHHcCC--CH----HHHHHHH
Confidence 5689999999999999854 36677777764332222 23233 2333334333333221 11 1222222
Q ss_pred HhhhccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCc--cccce-E-------EecCC----CCCCCC
Q 021360 84 SDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN--ESFSV-I-------VGSDE----VRTGKP 149 (313)
Q Consensus 84 ~~~~~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~--~~f~~-v-------~~~~~----~~~~kp 149 (313)
.. ....++||+.++|+.+++.|++++++|++....++..+ +.+|+. .+|.. + +.+.+ ....++
T Consensus 79 ~~--~~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l-~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~ 155 (224)
T PLN02954 79 EK--RPPRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVA-AILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGG 155 (224)
T ss_pred HH--ccCCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHH-HHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCcc
Confidence 22 13568999999999999999999999999999998888 778886 24432 1 11211 123567
Q ss_pred ChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCc-cccccccceeecccccc
Q 021360 150 SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQ-THRYTAADEVINSLLDL 214 (313)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~-~~~~~~s~~ii~~l~e~ 214 (313)
+++.++.++++++. ++|++|||+.+|+.+++.+|+.++....+... ......++.++.++.++
T Consensus 156 K~~~i~~~~~~~~~--~~~i~iGDs~~Di~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~el 219 (224)
T PLN02954 156 KAEAVQHIKKKHGY--KTMVMIGDGATDLEARKPGGADLFIGYGGVQVREAVAAKADWFVTDFQDL 219 (224)
T ss_pred HHHHHHHHHHHcCC--CceEEEeCCHHHHHhhhcCCCCEEEecCCCccCHHHHhcCCEEECCHHHH
Confidence 88999998888774 68999999999999999988886654332221 11223478888877665
No 59
>PRK06769 hypothetical protein; Validated
Probab=99.79 E-value=1e-18 Score=139.92 Aligned_cols=124 Identities=15% Similarity=0.209 Sum_probs=94.3
Q ss_pred CCCCchHHHHHHHHHHCCCCEEEEeCCchH--------HHHHHHHhhcCCccccceEE-ecCCCCCCCCChHHHHHHHHH
Q 021360 90 VKALPGANRLIKHLSCHGVPMALASNSHRA--------TIESKISYQHGWNESFSVIV-GSDEVRTGKPSPDIFLEAAKR 160 (313)
Q Consensus 90 ~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~--------~~~~~l~~~~~~~~~f~~v~-~~~~~~~~kp~~~~~~~~~~~ 160 (313)
..++||+.++|++|++.|++++++||++.. .....+ +..|+..+|.... ++++....||+|+.+..++++
T Consensus 27 ~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l-~~~g~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~ 105 (173)
T PRK06769 27 FTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQEL-KGFGFDDIYLCPHKHGDGCECRKPSTGMLLQAAEK 105 (173)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHH-HhCCcCEEEECcCCCCCCCCCCCCCHHHHHHHHHH
Confidence 468999999999999999999999998742 122234 5667754433222 345567899999999999999
Q ss_pred cCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCccc-------c-ccccceeecccccc
Q 021360 161 LNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTH-------R-YTAADEVINSLLDL 214 (313)
Q Consensus 161 ~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~-------~-~~~s~~ii~~l~e~ 214 (313)
++++|++|++|||+..|+.+|+++|+.++.+.++..... . ...++.++.++.++
T Consensus 106 l~~~p~~~i~IGD~~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~l~~~~~~~~~~~~~el 167 (173)
T PRK06769 106 HGLDLTQCAVIGDRWTDIVAAAKVNATTILVRTGAGYDALHTYRDKWAHIEPNYIAENFEDA 167 (173)
T ss_pred cCCCHHHeEEEcCCHHHHHHHHHCCCeEEEEecCCCchhhhhhhcccccCCCcchhhCHHHH
Confidence 999999999999999999999999999999988543211 1 12356666666554
No 60
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.78 E-value=5.1e-18 Score=147.93 Aligned_cols=184 Identities=15% Similarity=0.157 Sum_probs=123.0
Q ss_pred cCccEEEEecCCccccChHHHHHHHHHHHHHcCCCCChhhhhh--hcC-CCHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 021360 7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHK--IVG-KTPLEEAAIIVEDYGLPCAKHEFVNEVYSMF 83 (313)
Q Consensus 7 ~~~k~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (313)
..+++++|||||||+.. +.+.++.+..|.......... ..| ....+.+......... ..+.. +
T Consensus 108 ~~~~LvvfDmDGTLI~~-----e~i~eia~~~g~~~~v~~it~~~m~Geldf~esl~~rv~~l~g--~~~~i-------l 173 (322)
T PRK11133 108 RTPGLLVMDMDSTAIQI-----ECIDEIAKLAGTGEEVAEVTERAMRGELDFEASLRQRVATLKG--ADANI-------L 173 (322)
T ss_pred cCCCEEEEECCCCCcch-----HHHHHHHHHhCCchHHHHHHHHHHcCCcCHHHHHHHHHHHhCC--CCHHH-------H
Confidence 46899999999999843 345666666666543322211 112 1222222222221111 01111 1
Q ss_pred HhhhccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccc-------eEEecC---CCCCCCCChHH
Q 021360 84 SDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS-------VIVGSD---EVRTGKPSPDI 153 (313)
Q Consensus 84 ~~~~~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~-------~v~~~~---~~~~~kp~~~~ 153 (313)
.......+++||+.++++.|++.|++++++|++...+.+..+ +++++...+. ..+++. +...++++++.
T Consensus 174 ~~v~~~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~-~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~ 252 (322)
T PRK11133 174 QQVRENLPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLR-DKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADT 252 (322)
T ss_pred HHHHHhCCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHH-HHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHH
Confidence 222245789999999999999999999999999988877666 7788854332 111121 22357899999
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCccccccccceeec
Q 021360 154 FLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVIN 209 (313)
Q Consensus 154 ~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~ 209 (313)
++++++++|+++++|++|||+.||+.|++.+|+.+++ +. .+.....++..++
T Consensus 253 L~~la~~lgi~~~qtIaVGDg~NDl~m~~~AGlgiA~-nA---kp~Vk~~Ad~~i~ 304 (322)
T PRK11133 253 LTRLAQEYEIPLAQTVAIGDGANDLPMIKAAGLGIAY-HA---KPKVNEQAQVTIR 304 (322)
T ss_pred HHHHHHHcCCChhhEEEEECCHHHHHHHHHCCCeEEe-CC---CHHHHhhCCEEec
Confidence 9999999999999999999999999999999998876 33 3344446777776
No 61
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.77 E-value=1.7e-17 Score=138.01 Aligned_cols=146 Identities=16% Similarity=0.114 Sum_probs=108.0
Q ss_pred EEEEecCCccccChHHHHHHHHHHHHHcCCC-CChhhhhhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhcc
Q 021360 11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCK 89 (313)
Q Consensus 11 ~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (313)
+|+|||||||+|+...+ .+|.. .+...+..+.+.... ..+.+.. -..
T Consensus 65 aViFDlDgTLlDSs~~~---------~~G~~~~s~~~~~~l~g~~~w--------------------~~~~~~~---~~~ 112 (237)
T TIGR01672 65 AVSFDIDDTVLFSSPGF---------WRGKKTFSPGSEDYLKNQVFW--------------------EKVNNGW---DEF 112 (237)
T ss_pred EEEEeCCCccccCcHHH---------hCCcccCCHHHhhhhcChHHH--------------------HHHHHhc---ccC
Confidence 89999999999998766 15544 243333333332211 1111111 134
Q ss_pred CCCCchHHHHHHHHHHCCCCEEEEeCC----chHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCC
Q 021360 90 VKALPGANRLIKHLSCHGVPMALASNS----HRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 165 (313)
Q Consensus 90 ~~~~pgv~e~l~~l~~~g~~~~i~s~~----~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~ 165 (313)
..+.+++.++|+.++++|++++++|+. ....++..+ +.+|+..+|+.++++++....||++. .+++++++
T Consensus 113 s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll-~~lGi~~~f~~i~~~d~~~~~Kp~~~---~~l~~~~i-- 186 (237)
T TIGR01672 113 SIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLA-KNFHIPAMNPVIFAGDKPGQYQYTKT---QWIQDKNI-- 186 (237)
T ss_pred CcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHH-HHhCCchheeEEECCCCCCCCCCCHH---HHHHhCCC--
Confidence 567778999999999999999999998 556666666 88999999999999888777778765 34556665
Q ss_pred CcEEEEecCHhhHHHHHHcCCeEEEeCCCCC
Q 021360 166 SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPK 196 (313)
Q Consensus 166 ~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~ 196 (313)
++||||+.+|+.+|+++|++++.+.++..
T Consensus 187 --~i~vGDs~~DI~aAk~AGi~~I~V~~g~~ 215 (237)
T TIGR01672 187 --RIHYGDSDNDITAAKEAGARGIRILRASN 215 (237)
T ss_pred --eEEEeCCHHHHHHHHHCCCCEEEEEecCC
Confidence 79999999999999999999999987543
No 62
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.77 E-value=2.9e-17 Score=129.82 Aligned_cols=200 Identities=18% Similarity=0.222 Sum_probs=140.7
Q ss_pred ccCccEEEEecCCccccChHHHHHHHH----H-HHHHcCCCCChhhhhhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 021360 6 KKLMSCVILDLDGTLLNTDGMFSEVLK----T-FLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVY 80 (313)
Q Consensus 6 ~~~~k~vifDlDGTL~d~~~~~~~~~~----~-~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (313)
..++++++||+|.||+.....+....+ + +.+++|++-+........-.......-.-+...+...+.+++.+.+.
T Consensus 12 ~~~~~~l~FDiDdtLYp~St~i~~~~~~nI~~f~~eklgi~~e~a~~L~~~~yk~YG~t~aGL~~~~~~~d~deY~~~V~ 91 (244)
T KOG3109|consen 12 GPNYKCLFFDIDDTLYPLSTGIQLMMRNNIQEFFVEKLGISEEEAEELRESLYKEYGLTMAGLKAVGYIFDADEYHRFVH 91 (244)
T ss_pred CccceEEEEecccccccCchhHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHhh
Confidence 357899999999999987554433333 3 34467766544332221111111222233444555555555544333
Q ss_pred HHHHhhhccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCC------CCCCChHHH
Q 021360 81 SMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR------TGKPSPDIF 154 (313)
Q Consensus 81 ~~~~~~~~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~------~~kp~~~~~ 154 (313)
...- ++.+.+.+-.+++|-.|+.++ .+++||+++.++.+.+ +++|+.++|+.+++.+... ..||.++.|
T Consensus 92 ~~LP--lq~LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~L-k~LGieDcFegii~~e~~np~~~~~vcKP~~~af 166 (244)
T KOG3109|consen 92 GRLP--LQDLKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRIL-KKLGIEDCFEGIICFETLNPIEKTVVCKPSEEAF 166 (244)
T ss_pred ccCc--HhhcCCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHH-HHhChHHhccceeEeeccCCCCCceeecCCHHHH
Confidence 2211 245888999999998888764 8999999999999999 9999999999999876543 579999999
Q ss_pred HHHHHHcCCC-CCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCccccccccceeecccccc
Q 021360 155 LEAAKRLNME-PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDL 214 (313)
Q Consensus 155 ~~~~~~~~~~-~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~~l~e~ 214 (313)
+.+++..|++ |+++++|+||.++|..|++.|++++++...... ..++.++.+..+.
T Consensus 167 E~a~k~agi~~p~~t~FfDDS~~NI~~ak~vGl~tvlv~~~~~~----~~~d~~l~~ih~~ 223 (244)
T KOG3109|consen 167 EKAMKVAGIDSPRNTYFFDDSERNIQTAKEVGLKTVLVGREHKI----KGVDYALEQIHNN 223 (244)
T ss_pred HHHHHHhCCCCcCceEEEcCchhhHHHHHhccceeEEEEeeecc----cchHHHHHHhhch
Confidence 9999999998 999999999999999999999999998763221 1345555544443
No 63
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.76 E-value=5e-18 Score=130.15 Aligned_cols=99 Identities=23% Similarity=0.419 Sum_probs=84.9
Q ss_pred CCCCchHHHHHHHHHHCCCCEEEEeCCc--------hHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHc
Q 021360 90 VKALPGANRLIKHLSCHGVPMALASNSH--------RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL 161 (313)
Q Consensus 90 ~~~~pgv~e~l~~l~~~g~~~~i~s~~~--------~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~ 161 (313)
..++|++.++|+.|++.|++++++||++ ...+...+ +++++.. +.++.+. ...||+++.++.+++++
T Consensus 24 ~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l-~~~~l~~--~~~~~~~--~~~KP~~~~~~~~~~~~ 98 (132)
T TIGR01662 24 RILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRL-EELGVPI--DVLYACP--HCRKPKPGMFLEALKRF 98 (132)
T ss_pred heeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHH-HHCCCCE--EEEEECC--CCCCCChHHHHHHHHHc
Confidence 3688999999999999999999999998 77777777 7788753 3333333 46799999999999999
Q ss_pred -CCCCCcEEEEec-CHhhHHHHHHcCCeEEEeCC
Q 021360 162 -NMEPSSSLVIED-SVIGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 162 -~~~~~~~i~vgD-~~~Di~~a~~~G~~~i~v~~ 193 (313)
++++++++|||| +..|+.+|+++|+.++++.+
T Consensus 99 ~~~~~~~~v~IGD~~~~Di~~A~~~Gi~~i~~~~ 132 (132)
T TIGR01662 99 NEIDPEESVYVGDQDLTDLQAAKRAGLAFILVAP 132 (132)
T ss_pred CCCChhheEEEcCCCcccHHHHHHCCCeEEEeeC
Confidence 599999999999 68999999999999999864
No 64
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.76 E-value=6.3e-18 Score=133.07 Aligned_cols=102 Identities=15% Similarity=0.185 Sum_probs=89.6
Q ss_pred CCCCchHHHHHHHHHHCCCCEEEEeCCc---------------hHHHHHHHHhhcCCccccceEE-e----cCCCCCCCC
Q 021360 90 VKALPGANRLIKHLSCHGVPMALASNSH---------------RATIESKISYQHGWNESFSVIV-G----SDEVRTGKP 149 (313)
Q Consensus 90 ~~~~pgv~e~l~~l~~~g~~~~i~s~~~---------------~~~~~~~l~~~~~~~~~f~~v~-~----~~~~~~~kp 149 (313)
+.++||+.++|++|+++|++++++||.+ ...+...+ +.+|+. |+.++ + +++....||
T Consensus 28 ~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l-~~~gl~--fd~ii~~~~~~~~~~~~~KP 104 (161)
T TIGR01261 28 LRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIF-RSQGII--FDDVLICPHFPDDNCDCRKP 104 (161)
T ss_pred eeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHH-HHCCCc--eeEEEECCCCCCCCCCCCCC
Confidence 5789999999999999999999999973 44556666 778886 76554 4 477788999
Q ss_pred ChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCCC
Q 021360 150 SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL 194 (313)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~ 194 (313)
+++.+..+++++++++++|+||||+.+|+.+|+++|+.++++.++
T Consensus 105 ~~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i~~~~~ 149 (161)
T TIGR01261 105 KIKLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGIQYDEE 149 (161)
T ss_pred CHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEEEEChh
Confidence 999999999999999999999999999999999999999999884
No 65
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.76 E-value=2.7e-18 Score=135.94 Aligned_cols=107 Identities=16% Similarity=0.069 Sum_probs=94.3
Q ss_pred ccCCCCchHHHHHHHHHHCCCCEEEEeCC-chHHHHHHHHhhcCCc---------cccceEEecCCCCCCCCChHHHHHH
Q 021360 88 CKVKALPGANRLIKHLSCHGVPMALASNS-HRATIESKISYQHGWN---------ESFSVIVGSDEVRTGKPSPDIFLEA 157 (313)
Q Consensus 88 ~~~~~~pgv~e~l~~l~~~g~~~~i~s~~-~~~~~~~~l~~~~~~~---------~~f~~v~~~~~~~~~kp~~~~~~~~ 157 (313)
....++||+.++|+.|++.|++++++|++ ....++..+ +.+++. .+|+.++++++....||.+..++.+
T Consensus 42 ~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L-~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~ 120 (174)
T TIGR01685 42 TEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEIL-GTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKV 120 (174)
T ss_pred CEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHH-HhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHh
Confidence 35688999999999999999999999998 778777777 888988 9999999998876677777777777
Q ss_pred HHHc--CCCCCcEEEEecCHhhHHHHHHcCCeEEEeCCCC
Q 021360 158 AKRL--NMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 195 (313)
Q Consensus 158 ~~~~--~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~ 195 (313)
.+.+ +++|++|+||||++.|+.+|+++|+.++.+..+.
T Consensus 121 ~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i~v~~g~ 160 (174)
T TIGR01685 121 NKVDPSVLKPAQILFFDDRTDNVREVWGYGVTSCYCPSGM 160 (174)
T ss_pred hhcccCCCCHHHeEEEcChhHhHHHHHHhCCEEEEcCCCc
Confidence 6666 7999999999999999999999999999997754
No 66
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.74 E-value=8.2e-17 Score=134.24 Aligned_cols=164 Identities=15% Similarity=0.165 Sum_probs=110.8
Q ss_pred ccEEEEecCCccccChHHHHHHHHHHHHHcCCCCChhhhhh-h-cCC-CHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 021360 9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHK-I-VGK-TPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD 85 (313)
Q Consensus 9 ~k~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~-~-~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (313)
-++|+||+||||++.+... . ++++++. ........ + .|. ...+.+...++.+.... .+.+.+.+.
T Consensus 3 ~~~vifDfDgTi~~~d~~~-~----~~~~~~~-~~~~~i~~~~~~g~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~- 70 (219)
T PRK09552 3 SIQIFCDFDGTITNNDNII-A----IMKKFAP-PEWEELKDDILSQELSIQEGVGQMFQLLPSNL-----KEEIIQFLL- 70 (219)
T ss_pred CcEEEEcCCCCCCcchhhH-H----HHHHhCH-HHHHHHHHHHHhCCcCHHHHHHHHHHhCCCCc-----hHHHHHHHH-
Confidence 3589999999999998654 2 3333332 11222211 1 122 44556666666543221 122222222
Q ss_pred hhccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCcc--cc--ceEEecCCCCCCCCChHH--------
Q 021360 86 HLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE--SF--SVIVGSDEVRTGKPSPDI-------- 153 (313)
Q Consensus 86 ~~~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~--~f--~~v~~~~~~~~~kp~~~~-------- 153 (313)
...+++||+.++|+.+++.|++++++|++...++...+ +++ +.. .+ +..+.++.....||+|..
T Consensus 71 --~~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il-~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~ 146 (219)
T PRK09552 71 --ETAEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLL-QGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCG 146 (219)
T ss_pred --hCCCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHH-HHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCC
Confidence 45789999999999999999999999999999999888 655 432 22 334555555566666543
Q ss_pred --HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeE
Q 021360 154 --FLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEV 188 (313)
Q Consensus 154 --~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~ 188 (313)
...++++++.++++|++|||+.+|+.+|+.+|+.+
T Consensus 147 ~~K~~~l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~~~ 183 (219)
T PRK09552 147 CCKPSLIRKLSDTNDFHIVIGDSITDLEAAKQADKVF 183 (219)
T ss_pred CchHHHHHHhccCCCCEEEEeCCHHHHHHHHHCCcce
Confidence 35677888999999999999999999999999943
No 67
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.70 E-value=1.3e-16 Score=122.57 Aligned_cols=103 Identities=31% Similarity=0.466 Sum_probs=92.3
Q ss_pred ccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCC----------------CCCh
Q 021360 88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTG----------------KPSP 151 (313)
Q Consensus 88 ~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~----------------kp~~ 151 (313)
....++|++.++++.|++.|++++++|++....++..+ +..++..+++.+++.+..... ||++
T Consensus 21 ~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (139)
T cd01427 21 EELELYPGVKEALKELKEKGIKLALATNKSRREVLELL-EELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNP 99 (139)
T ss_pred ccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHH-HHcCCchhhhheeccchhhhhcccccccccccccccCCCCH
Confidence 45789999999999999999999999999999998888 778888788888877665544 8999
Q ss_pred HHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEe
Q 021360 152 DIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 191 (313)
Q Consensus 152 ~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v 191 (313)
..+..+.++++.++++++++||+.+|+.+++.+|++++++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~igD~~~d~~~~~~~g~~~i~v 139 (139)
T cd01427 100 DKLLAALKLLGVDPEEVLMVGDSLNDIEMAKAAGGLGVAV 139 (139)
T ss_pred HHHHHHHHHcCCChhhEEEeCCCHHHHHHHHHcCCceeeC
Confidence 9999999999999999999999999999999999988764
No 68
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.70 E-value=1.7e-16 Score=125.76 Aligned_cols=96 Identities=16% Similarity=0.194 Sum_probs=81.8
Q ss_pred CCchHHHHHHHHHHCCCCEEEEeCCchH------------HHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHH
Q 021360 92 ALPGANRLIKHLSCHGVPMALASNSHRA------------TIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAK 159 (313)
Q Consensus 92 ~~pgv~e~l~~l~~~g~~~~i~s~~~~~------------~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~ 159 (313)
++||+.++|+.|++.|++++++||.+.. .+...+ +++|+.. +.+++++....+||+|+.+..+++
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l-~~~gl~~--~~ii~~~~~~~~KP~p~~~~~~~~ 119 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFL-EKLKVPI--QVLAATHAGLYRKPMTGMWEYLQS 119 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHH-HHcCCCE--EEEEecCCCCCCCCccHHHHHHHH
Confidence 6899999999999999999999998763 355566 7788743 566666666678999999999999
Q ss_pred HcC--CCCCcEEEEecCH--------hhHHHHHHcCCeEEE
Q 021360 160 RLN--MEPSSSLVIEDSV--------IGVVAGKAAGMEVVA 190 (313)
Q Consensus 160 ~~~--~~~~~~i~vgD~~--------~Di~~a~~~G~~~i~ 190 (313)
+++ +++++++||||+. +|+.+|+++|+.+++
T Consensus 120 ~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~~~ 160 (166)
T TIGR01664 120 QYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEFKY 160 (166)
T ss_pred HcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCCcCC
Confidence 999 9999999999996 699999999998754
No 69
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.70 E-value=5.9e-16 Score=127.83 Aligned_cols=184 Identities=17% Similarity=0.137 Sum_probs=111.2
Q ss_pred ccEEEEecCCccccChHHHHHHHHHHHHHcCCCCChhhhhhhcC-CCHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHhh
Q 021360 9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVG-KTPLEEAAIIVEDYG-LPCAKHEFVNEVYSMFSDH 86 (313)
Q Consensus 9 ~k~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 86 (313)
|++|+||+||||++ ..|..+.+++|.+.... . ..+ ......+..-+.... ...+.+++ ...
T Consensus 1 ~~~v~FD~DGTL~~------~~~~~~~~~~g~~~~~~-~--~~~~~~~~~~~~~~~~~l~~~~~~~~~i--------~~~ 63 (205)
T PRK13582 1 MEIVCLDLEGVLVP------EIWIAFAEKTGIPELRA-T--TRDIPDYDVLMKQRLDILDEHGLGLADI--------QEV 63 (205)
T ss_pred CeEEEEeCCCCChh------hHHHHHHHHcCChHHHH-H--hcCCCCHHHHHHHHHHHHHHcCCCHHHH--------HHH
Confidence 57899999999993 24556667777542110 0 001 111111111111110 01111111 223
Q ss_pred hccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecC-C---CCCCCCChHHHHHHHHHcC
Q 021360 87 LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD-E---VRTGKPSPDIFLEAAKRLN 162 (313)
Q Consensus 87 ~~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~-~---~~~~kp~~~~~~~~~~~~~ 162 (313)
.....++||+.++|+.+++. ++++++|++...+++..+ +++++..+|...+... + .+..++.|.....++++++
T Consensus 64 ~~~~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l-~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~ 141 (205)
T PRK13582 64 IATLDPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLM-RQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALK 141 (205)
T ss_pred HHhCCCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHH-HHcCCchhhcceEEECCCCeEECccccccchHHHHHHHHH
Confidence 35578899999999999999 999999999999999888 8889887775433221 1 1111223334445555666
Q ss_pred CCCCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCccccccccce-eecccccc
Q 021360 163 MEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADE-VINSLLDL 214 (313)
Q Consensus 163 ~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~-ii~~l~e~ 214 (313)
..+++|++|||+.+|+.+++.+|+.+. +.+. .......+.. +++++.++
T Consensus 142 ~~~~~~v~iGDs~~D~~~~~aa~~~v~-~~~~--~~~~~~~~~~~~~~~~~el 191 (205)
T PRK13582 142 SLGYRVIAAGDSYNDTTMLGEADAGIL-FRPP--ANVIAEFPQFPAVHTYDEL 191 (205)
T ss_pred HhCCeEEEEeCCHHHHHHHHhCCCCEE-ECCC--HHHHHhCCcccccCCHHHH
Confidence 677899999999999999999998664 3321 1111113343 67777664
No 70
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.69 E-value=9e-16 Score=124.89 Aligned_cols=96 Identities=17% Similarity=0.201 Sum_probs=79.5
Q ss_pred ccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCC--------------------CCCC
Q 021360 88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE--------------------VRTG 147 (313)
Q Consensus 88 ~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~--------------------~~~~ 147 (313)
...+++|++.++++.|++.|++++++|++....++..+ +++++..+|+.+++.+. ...+
T Consensus 69 ~~~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l-~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 147 (188)
T TIGR01489 69 KSAPIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVL-EGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCG 147 (188)
T ss_pred HhCCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHH-HHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCCC
Confidence 34689999999999999999999999999999998888 88899999998886532 1233
Q ss_pred CCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCe
Q 021360 148 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGME 187 (313)
Q Consensus 148 kp~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~ 187 (313)
.++++.++.+..+. ++++++|||+.+|+.+|+++++.
T Consensus 148 ~~K~~~~~~~~~~~---~~~~i~iGD~~~D~~aa~~~d~~ 184 (188)
T TIGR01489 148 CCKGKVIHKLSEPK---YQHIIYIGDGVTDVCPAKLSDVV 184 (188)
T ss_pred CCHHHHHHHHHhhc---CceEEEECCCcchhchHhcCCcc
Confidence 44567777776553 89999999999999999999763
No 71
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.65 E-value=3.6e-15 Score=122.67 Aligned_cols=103 Identities=20% Similarity=0.284 Sum_probs=86.3
Q ss_pred CCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCC-------C---CCCCCChHHHHHHHH
Q 021360 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE-------V---RTGKPSPDIFLEAAK 159 (313)
Q Consensus 90 ~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~-------~---~~~kp~~~~~~~~~~ 159 (313)
..++|++.++++.+++.|++++++|++...+++.+. +.+|++..+...+..++ . ..++.+...++++++
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia-~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~ 154 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIA-ERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAA 154 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHH-HHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHH
Confidence 789999999999999999999999999998888777 88999766643333332 1 144567788999999
Q ss_pred HcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCC
Q 021360 160 RLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 160 ~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~ 193 (313)
++|+++++++++||+.||+.|.+.+|.+++.-+.
T Consensus 155 ~~g~~~~~~~a~gDs~nDlpml~~ag~~ia~n~~ 188 (212)
T COG0560 155 ELGIPLEETVAYGDSANDLPMLEAAGLPIAVNPK 188 (212)
T ss_pred HcCCCHHHeEEEcCchhhHHHHHhCCCCeEeCcC
Confidence 9999999999999999999999999998765544
No 72
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.65 E-value=6.5e-15 Score=121.31 Aligned_cols=179 Identities=17% Similarity=0.141 Sum_probs=115.2
Q ss_pred EEEEecCCccccChHHHHHHHHHHHHHcCCC-CC---h--hhhhhhc--CCCHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 021360 11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKE-WD---G--REKHKIV--GKTPLEEAAIIVEDYGLPCAKHEFVNEVYSM 82 (313)
Q Consensus 11 ~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~-~~---~--~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (313)
+++||+||||++.+.... .+...+.+.... .. . .....+. +....+....+....-...+.+++.....+.
T Consensus 1 ~a~FD~DgTL~~~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~ 79 (202)
T TIGR01490 1 LAFFDFDGTLTAKDTLFI-FLKFLASKNILFEELRLPKVLARFEFFLNRGLDYMAYYRAFALDALAGLLEEDVRAIVEEF 79 (202)
T ss_pred CeEEccCCCCCCCchHHH-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 379999999999865432 233333222111 00 0 0001111 1122233333332222234455555555444
Q ss_pred HHhhhccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccce-EEecCC----------CCCCCCCh
Q 021360 83 FSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSV-IVGSDE----------VRTGKPSP 151 (313)
Q Consensus 83 ~~~~~~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~-v~~~~~----------~~~~kp~~ 151 (313)
+.... ...++|++.++++.+++.|++++++|+++...++..+ +++|+...|.. +...++ ...++++.
T Consensus 80 ~~~~~-~~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~-~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~ 157 (202)
T TIGR01490 80 VNQKI-ESILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLA-RILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKV 157 (202)
T ss_pred HHHHH-HHhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH-HHcCCcceEecceEEcCCCEEeCCccCCCCCChHHH
Confidence 44333 3478999999999999999999999999999998877 88898766543 221111 12345667
Q ss_pred HHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeC
Q 021360 152 DIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVP 192 (313)
Q Consensus 152 ~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~ 192 (313)
..+++++++.++++++|+++||+.+|+.+++.+|..+++.+
T Consensus 158 ~~l~~~~~~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v~~ 198 (202)
T TIGR01490 158 HALAELLAEEQIDLKDSYAYGDSISDLPLLSLVGHPYVVNP 198 (202)
T ss_pred HHHHHHHHHcCCCHHHcEeeeCCcccHHHHHhCCCcEEeCC
Confidence 77888899999999999999999999999999999875543
No 73
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.63 E-value=2e-14 Score=117.64 Aligned_cols=160 Identities=18% Similarity=0.140 Sum_probs=103.8
Q ss_pred ccEEEEecCCccccChHHHHHHHHHHHHHcCCCCChhhhhhhcCC-CHHHHHHH---HHHHhCCCCCHHHHHHHHHHHHH
Q 021360 9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGK-TPLEEAAI---IVEDYGLPCAKHEFVNEVYSMFS 84 (313)
Q Consensus 9 ~k~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 84 (313)
|.+++|||||||++. .|.++..+.|... .. .. ..+. ...+.... +++..|++ .+.+ .
T Consensus 1 ~~la~FDlD~TLi~~------~w~~~~~~~g~~~-~~-~~-~~~~~~~~~~~~~r~~ll~~~g~~--~~~i--------~ 61 (203)
T TIGR02137 1 MEIACLDLEGVLVPE------IWIAFAEKTGIDA-LK-AT-TRDIPDYDVLMKQRLRILDEHGLK--LGDI--------Q 61 (203)
T ss_pred CeEEEEeCCcccHHH------HHHHHHHHcCCcH-HH-HH-hcCCcCHHHHHHHHHHHHHHCCCC--HHHH--------H
Confidence 357999999999964 3667777777431 11 11 1121 11222221 11222333 2222 2
Q ss_pred hhhccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccce--------EEecCCCCCCCCChHHHHH
Q 021360 85 DHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSV--------IVGSDEVRTGKPSPDIFLE 156 (313)
Q Consensus 85 ~~~~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~--------v~~~~~~~~~kp~~~~~~~ 156 (313)
+.....+++||+.++++.+++.+ +++++|++...++...+ +++|+..+|.. .+++... ..++.+....+
T Consensus 62 ~~~~~i~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il-~~lgi~~~~an~l~~~~~g~~tG~~~-~~~~~K~~~l~ 138 (203)
T TIGR02137 62 EVIATLKPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLM-RQLGFPTLLCHKLEIDDSDRVVGYQL-RQKDPKRQSVI 138 (203)
T ss_pred HHHHhCCCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHH-HHcCCchhhceeeEEecCCeeECeee-cCcchHHHHHH
Confidence 22345689999999999999974 99999999999998877 88999776641 2222222 23444444444
Q ss_pred HHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCC
Q 021360 157 AAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 157 ~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~ 193 (313)
.+++.+ .+++++||+.||+.+++.+|.++.+...
T Consensus 139 ~l~~~~---~~~v~vGDs~nDl~ml~~Ag~~ia~~ak 172 (203)
T TIGR02137 139 AFKSLY---YRVIAAGDSYNDTTMLSEAHAGILFHAP 172 (203)
T ss_pred HHHhhC---CCEEEEeCCHHHHHHHHhCCCCEEecCC
Confidence 445544 3899999999999999999999887766
No 74
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=99.63 E-value=7.3e-16 Score=133.10 Aligned_cols=121 Identities=25% Similarity=0.321 Sum_probs=90.4
Q ss_pred CCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEE---ecCCCCCCCCChHHHHHHHHHcCCCCCcE
Q 021360 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIV---GSDEVRTGKPSPDIFLEAAKRLNMEPSSS 168 (313)
Q Consensus 92 ~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~---~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 168 (313)
.++++.++++.|++.|. +.++||.+............+...+|+.+. ..+....+||+|..+..+++++++++++|
T Consensus 144 ~y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~~ 222 (279)
T TIGR01452 144 SYAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFSIDPART 222 (279)
T ss_pred CHHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhhE
Confidence 37899999999998886 788988876443111113345555555443 23444578999999999999999999999
Q ss_pred EEEecCH-hhHHHHHHcCCeEEEeCCCCCcccc----------ccccceeeccccc
Q 021360 169 LVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHR----------YTAADEVINSLLD 213 (313)
Q Consensus 169 i~vgD~~-~Di~~a~~~G~~~i~v~~~~~~~~~----------~~~s~~ii~~l~e 213 (313)
+||||+. .|+.+|+++|+.++.|.++....+. ...++++++++.+
T Consensus 223 lmIGD~~~tDI~~A~~aGi~si~V~~G~~~~~~l~~~~~~~~~~~~Pd~~~~~l~~ 278 (279)
T TIGR01452 223 LMVGDRLETDILFGHRCGMTTVLVLSGVSRLEEAQEYLAAGQHDLVPDYVVESLAD 278 (279)
T ss_pred EEECCChHHHHHHHHHcCCcEEEECCCCCCHHHHHhhhcccccCCCCCEEeccccc
Confidence 9999996 8999999999999999886543222 1257888887765
No 75
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=99.62 E-value=8.7e-16 Score=130.77 Aligned_cols=122 Identities=20% Similarity=0.208 Sum_probs=95.8
Q ss_pred CCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCC---CCCCChHHHHHHHHHcCCCCCcE
Q 021360 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR---TGKPSPDIFLEAAKRLNMEPSSS 168 (313)
Q Consensus 92 ~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~---~~kp~~~~~~~~~~~~~~~~~~~ 168 (313)
.++++.+.++.|+..+.+++++||.+..+..... ..+++..+|+.+....... .+||+|+.++.++++++++|+++
T Consensus 121 ~y~~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~-~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~ 199 (257)
T TIGR01458 121 SYQILNQAFRLLLDGAKPLLIAIGKGRYYKRKDG-LALDVGPFVTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEA 199 (257)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEeCCCCCCcCCCC-CCCCchHHHHHHHHHhCCCceeecCCCHHHHHHHHHHhCCChhhE
Confidence 3578888899999888999999998877665444 5567777777665443322 47999999999999999999999
Q ss_pred EEEecCH-hhHHHHHHcCCeEEEeCCCCCc-c---ccccccceeecccccc
Q 021360 169 LVIEDSV-IGVVAGKAAGMEVVAVPSLPKQ-T---HRYTAADEVINSLLDL 214 (313)
Q Consensus 169 i~vgD~~-~Di~~a~~~G~~~i~v~~~~~~-~---~~~~~s~~ii~~l~e~ 214 (313)
+||||+. .|+.+|+++|+.++++.++... . .....++.+++++.++
T Consensus 200 ~~vGD~~~~Di~~a~~~G~~~i~v~~G~~~~~~~~~~~~~pd~~~~sl~el 250 (257)
T TIGR01458 200 VMIGDDCRDDVGGAQDCGMRGIQVRTGKYRPSDEEKINVPPDLTCDSLPHA 250 (257)
T ss_pred EEECCCcHHHHHHHHHcCCeEEEECCCCCChHHhcccCCCCCEEECCHHHH
Confidence 9999996 8999999999999999886421 1 1133578888888765
No 76
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.61 E-value=3.2e-15 Score=113.47 Aligned_cols=88 Identities=19% Similarity=0.166 Sum_probs=76.8
Q ss_pred CCCchHHHHHHHHHHCCCCEEEEeCC-chHHHHHHHHhhcC-------CccccceEEecCCCCCCCCChHHHHHHHHHcC
Q 021360 91 KALPGANRLIKHLSCHGVPMALASNS-HRATIESKISYQHG-------WNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN 162 (313)
Q Consensus 91 ~~~pgv~e~l~~l~~~g~~~~i~s~~-~~~~~~~~l~~~~~-------~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~ 162 (313)
.++||+.++|+.|++.|++++++|++ ....+...+ +..+ +..+|+.++++++ +|+|+.+..+++++|
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l-~~~~~~~~i~~l~~~f~~~~~~~~----~pkp~~~~~a~~~lg 103 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELL-KIFEDFGIIFPLAEYFDPLTIGYW----LPKSPRLVEIALKLN 103 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHH-HhccccccchhhHhhhhhhhhcCC----CcHHHHHHHHHHHhc
Confidence 57899999999999999999999999 777777666 6677 7888888887753 478899999999999
Q ss_pred --CCCCcEEEEecCHhhHHHHHH
Q 021360 163 --MEPSSSLVIEDSVIGVVAGKA 183 (313)
Q Consensus 163 --~~~~~~i~vgD~~~Di~~a~~ 183 (313)
++|++|+||||+..|+...++
T Consensus 104 ~~~~p~~~l~igDs~~n~~~~~~ 126 (128)
T TIGR01681 104 GVLKPKSILFVDDRPDNNEEVDY 126 (128)
T ss_pred CCCCcceEEEECCCHhHHHHHHh
Confidence 999999999999999877654
No 77
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.61 E-value=9.4e-15 Score=128.17 Aligned_cols=102 Identities=18% Similarity=0.235 Sum_probs=86.0
Q ss_pred cCCCCchHHHHHHHHHHCCCCEEEEeCC---------------chHHHHHHHHhhcCCccccceEEe-----cCCCCCCC
Q 021360 89 KVKALPGANRLIKHLSCHGVPMALASNS---------------HRATIESKISYQHGWNESFSVIVG-----SDEVRTGK 148 (313)
Q Consensus 89 ~~~~~pgv~e~l~~l~~~g~~~~i~s~~---------------~~~~~~~~l~~~~~~~~~f~~v~~-----~~~~~~~k 148 (313)
...++||+.++|+.|++.|++++++||. +...+...+ +..++. |+.++. ++++..+|
T Consensus 28 ~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL-~~~gl~--fd~i~i~~~~~sd~~~~rK 104 (354)
T PRK05446 28 KLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIF-ESQGIK--FDEVLICPHFPEDNCSCRK 104 (354)
T ss_pred cceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHH-HHcCCc--eeeEEEeCCcCcccCCCCC
Confidence 3579999999999999999999999995 233444455 666773 665543 35667899
Q ss_pred CChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCC
Q 021360 149 PSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 149 p~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~ 193 (313)
|+|+.+..+++++++++++++||||+.+|+.+|+.+|++++++++
T Consensus 105 P~p~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~~I~v~~ 149 (354)
T PRK05446 105 PKTGLVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIKGIRYAR 149 (354)
T ss_pred CCHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCeEEEEEC
Confidence 999999999999999999999999999999999999999999977
No 78
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.60 E-value=3.1e-14 Score=118.23 Aligned_cols=160 Identities=16% Similarity=0.189 Sum_probs=103.0
Q ss_pred EEEecCCccccChHHHHHHHHHHHHHcCCCCChhhh--hhhc-CCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhc
Q 021360 12 VILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREK--HKIV-GKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLC 88 (313)
Q Consensus 12 vifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (313)
++||+||||++.+... .+++.+..+ ....+ .... ..+..+.+...+....... .+...+.+. .
T Consensus 2 ~~fDFDgTit~~d~~~-----~~~~~~~~~-~~~~~~~~~~~g~~~~~e~~~~~~~~~~~~~-----~~~~~~~~~---~ 67 (214)
T TIGR03333 2 IICDFDGTITNNDNII-----SIMKQFAPP-EWEALKDGVLSKTLSIQEGVGRMFGLLPSSL-----KEEITSFVL---E 67 (214)
T ss_pred EEeccCCCCCcchhHH-----HHHHHhCcH-HHHHHHHHHHcCCccHHHHHHHHHhhCCCch-----HHHHHHHHH---h
Confidence 7999999999876432 111112111 01111 1111 2235555555555443321 112222222 2
Q ss_pred cCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCcccc---ceEEecCCCCCCCCChHHH----------H
Q 021360 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF---SVIVGSDEVRTGKPSPDIF----------L 155 (313)
Q Consensus 89 ~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f---~~v~~~~~~~~~kp~~~~~----------~ 155 (313)
..+++||+.++++.+++.|++++++|++...+++..+ +.++....+ +.++.++.....+|+|..+ .
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il-~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~ 146 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLL-EGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKP 146 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHH-HhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHH
Confidence 4789999999999999999999999999999998888 555443333 3444455555566665543 4
Q ss_pred HHHHHcCCCCCcEEEEecCHhhHHHHHHcCC
Q 021360 156 EAAKRLNMEPSSSLVIEDSVIGVVAGKAAGM 186 (313)
Q Consensus 156 ~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~ 186 (313)
.++++++..++++++|||+.+|+.+|+.+|+
T Consensus 147 ~~l~~~~~~~~~~i~iGDg~~D~~~a~~Ad~ 177 (214)
T TIGR03333 147 SLIRKLSEPNDYHIVIGDSVTDVEAAKQSDL 177 (214)
T ss_pred HHHHHHhhcCCcEEEEeCCHHHHHHHHhCCe
Confidence 5666777788999999999999999999998
No 79
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.60 E-value=2.3e-14 Score=114.37 Aligned_cols=98 Identities=19% Similarity=0.267 Sum_probs=82.2
Q ss_pred CCCchHHHHHHHHHHCCCCEEEEeCCc-hHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcEE
Q 021360 91 KALPGANRLIKHLSCHGVPMALASNSH-RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (313)
Q Consensus 91 ~~~pgv~e~l~~l~~~g~~~~i~s~~~-~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i 169 (313)
.++|++.++|+.|++.|++++++||++ ...+...+ +.+++.. . ....||+|+.+..+++++++++++|+
T Consensus 43 ~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~-~~~gl~~----~-----~~~~KP~p~~~~~~l~~~~~~~~~~l 112 (170)
T TIGR01668 43 EAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVE-KALGIPV----L-----PHAVKPPGCAFRRAHPEMGLTSEQVA 112 (170)
T ss_pred CcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHH-HHcCCEE----E-----cCCCCCChHHHHHHHHHcCCCHHHEE
Confidence 567899999999999999999999998 55555444 6666532 1 13479999999999999999999999
Q ss_pred EEecCH-hhHHHHHHcCCeEEEeCCCCCcc
Q 021360 170 VIEDSV-IGVVAGKAAGMEVVAVPSLPKQT 198 (313)
Q Consensus 170 ~vgD~~-~Di~~a~~~G~~~i~v~~~~~~~ 198 (313)
+|||+. .|+.+|+++|+.++++.++....
T Consensus 113 ~IGDs~~~Di~aA~~aGi~~i~v~~g~~~~ 142 (170)
T TIGR01668 113 VVGDRLFTDVMGGNRNGSYTILVEPLVHPD 142 (170)
T ss_pred EECCcchHHHHHHHHcCCeEEEEccCcCCc
Confidence 999998 69999999999999998865443
No 80
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=99.58 E-value=3e-14 Score=114.75 Aligned_cols=96 Identities=21% Similarity=0.227 Sum_probs=77.0
Q ss_pred ccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecC------------CCCCCCCChHHHH
Q 021360 88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD------------EVRTGKPSPDIFL 155 (313)
Q Consensus 88 ~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~------------~~~~~kp~~~~~~ 155 (313)
....++|++.++++.+++.|++++++|++...+++..+ +++|+...|...+..+ ....+..+...++
T Consensus 70 ~~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~-~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~ 148 (177)
T TIGR01488 70 RQVALRPGARELISWLKERGIDTVIVSGGFDFFVEPVA-EKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLK 148 (177)
T ss_pred hcCCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHH-HHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHHH
Confidence 45678999999999999999999999999999999888 7788876554332221 1123445567888
Q ss_pred HHHHHcCCCCCcEEEEecCHhhHHHHHHc
Q 021360 156 EAAKRLNMEPSSSLVIEDSVIGVVAGKAA 184 (313)
Q Consensus 156 ~~~~~~~~~~~~~i~vgD~~~Di~~a~~~ 184 (313)
+++++.+++++++++|||+.+|+.+++.+
T Consensus 149 ~~~~~~~~~~~~~~~iGDs~~D~~~~~~a 177 (177)
T TIGR01488 149 ELLEESKITLKKIIAVGDSVNDLPMLKLA 177 (177)
T ss_pred HHHHHhCCCHHHEEEEeCCHHHHHHHhcC
Confidence 88888899999999999999999998754
No 81
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.57 E-value=4.2e-14 Score=107.56 Aligned_cols=98 Identities=23% Similarity=0.380 Sum_probs=86.0
Q ss_pred CCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEE
Q 021360 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (313)
Q Consensus 91 ~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~ 170 (313)
...|.+.+.+..+++.|+++.++||..+..+.... +++++ +.+.. ..||-+..|+++++++++++++|+|
T Consensus 46 ~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~-~~l~v----~fi~~-----A~KP~~~~fr~Al~~m~l~~~~vvm 115 (175)
T COG2179 46 DATPELRAWLAELKEAGIKVVVVSNNKESRVARAA-EKLGV----PFIYR-----AKKPFGRAFRRALKEMNLPPEEVVM 115 (175)
T ss_pred CCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhh-hhcCC----ceeec-----ccCccHHHHHHHHHHcCCChhHEEE
Confidence 34567788899999999999999999999888777 88888 66553 5899999999999999999999999
Q ss_pred EecCH-hhHHHHHHcCCeEEEeCCCCCcc
Q 021360 171 IEDSV-IGVVAGKAAGMEVVAVPSLPKQT 198 (313)
Q Consensus 171 vgD~~-~Di~~a~~~G~~~i~v~~~~~~~ 198 (313)
|||.. .|+.+++.+|+++|.|.+....+
T Consensus 116 VGDqL~TDVlggnr~G~~tIlV~Pl~~~d 144 (175)
T COG2179 116 VGDQLFTDVLGGNRAGMRTILVEPLVAPD 144 (175)
T ss_pred EcchhhhhhhcccccCcEEEEEEEecccc
Confidence 99999 69999999999999999854433
No 82
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.57 E-value=1.2e-14 Score=114.86 Aligned_cols=97 Identities=12% Similarity=0.161 Sum_probs=80.5
Q ss_pred HHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHH
Q 021360 100 IKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVV 179 (313)
Q Consensus 100 l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~ 179 (313)
++.|++.|++++++|+.+...++..+ +++++..+|+. .||+|+.++.+++++++++++|++|||+.+|+.
T Consensus 43 ~~~L~~~Gi~laIiT~k~~~~~~~~l-~~lgi~~~f~~---------~kpkp~~~~~~~~~l~~~~~ev~~iGD~~nDi~ 112 (169)
T TIGR02726 43 VIVLQLCGIDVAIITSKKSGAVRHRA-EELKIKRFHEG---------IKKKTEPYAQMLEEMNISDAEVCYVGDDLVDLS 112 (169)
T ss_pred HHHHHHCCCEEEEEECCCcHHHHHHH-HHCCCcEEEec---------CCCCHHHHHHHHHHcCcCHHHEEEECCCHHHHH
Confidence 56678899999999999999999888 88999766653 278899999999999999999999999999999
Q ss_pred HHHHcCCeEEEeCCCCCccccccccceeec
Q 021360 180 AGKAAGMEVVAVPSLPKQTHRYTAADEVIN 209 (313)
Q Consensus 180 ~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~ 209 (313)
+++.+|+.+++.+. .+.....++.+..
T Consensus 113 ~~~~ag~~~am~nA---~~~lk~~A~~I~~ 139 (169)
T TIGR02726 113 MMKRVGLAVAVGDA---VADVKEAAAYVTT 139 (169)
T ss_pred HHHHCCCeEECcCc---hHHHHHhCCEEcC
Confidence 99999998776654 2333334666554
No 83
>PRK08238 hypothetical protein; Validated
Probab=99.56 E-value=1e-14 Score=133.59 Aligned_cols=206 Identities=13% Similarity=0.074 Sum_probs=129.8
Q ss_pred CccEEEEecCCccccChHHHHHHHHHHHHHcCCCCChhhhhhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh
Q 021360 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHL 87 (313)
Q Consensus 8 ~~k~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (313)
...-++||+||||+.++..++..+..+ ++.- ...-......-... ..+++.+.+...-..
T Consensus 9 ~~~pl~~DlDgTLi~td~l~e~~~~~l-~~~p--~~~~~l~~~~~~g~-----------------a~lK~~~a~~~~~d~ 68 (479)
T PRK08238 9 RDLPLVVDLDGTLIRTDLLHESIFALL-RRNP--LALLRLPLWLLRGK-----------------AALKRRLARRVDLDV 68 (479)
T ss_pred CCCCEEEeCCCCccccchHHHHHHHHH-HhCh--HHHHHHHHHHHhcH-----------------HHHHHHHHhhcCCCh
Confidence 345699999999999987776544333 2211 10000000000011 111222211111112
Q ss_pred ccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCc
Q 021360 88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (313)
Q Consensus 88 ~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 167 (313)
...+++|++.+++++++++|++++++|++++..++..+ +++|+ |+.++++++....||++.. ..+.+.++ .++
T Consensus 69 ~~lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~-~~lGl---Fd~Vigsd~~~~~kg~~K~-~~l~~~l~--~~~ 141 (479)
T PRK08238 69 ATLPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVA-AHLGL---FDGVFASDGTTNLKGAAKA-AALVEAFG--ERG 141 (479)
T ss_pred hhCCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-HHcCC---CCEEEeCCCccccCCchHH-HHHHHHhC--ccC
Confidence 34678899999999999999999999999999998877 78887 7999999887766665432 23334443 466
Q ss_pred EEEEecCHhhHHHHHHcCCeEEEeCCCCCccccccccceeeccccccC---ccccCCCCccccccCCCCCCcccccc
Q 021360 168 SLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLR---PEKWGLPPFQDWIEGTLPSEPWYIGG 241 (313)
Q Consensus 168 ~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~~l~e~~---~~~~~~~~~~~~~a~~~lg~p~~~~g 241 (313)
++++||+.+|+.+++.+|- .+.|++...-........+.+..+.... ....++.+.++|+.|.+..-|+...+
T Consensus 142 ~~yvGDS~~Dlp~~~~A~~-av~Vn~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~l~Rp~q~~kn~l~~~p~l~a~ 217 (479)
T PRK08238 142 FDYAGNSAADLPVWAAARR-AIVVGASPGVARAARALGPVERVFPPRPARLRTWLKALRVHQWAKNLLVFVPLLAAH 217 (479)
T ss_pred eeEecCCHHHHHHHHhCCC-eEEECCCHHHHHHHHHcCCcceecCCCchHHHHHHHHhCCcHHHHHHHHHHHHHHhc
Confidence 8999999999999999995 5566663322222222333444343322 34567789999998877766776544
No 84
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.56 E-value=1.8e-14 Score=119.72 Aligned_cols=90 Identities=31% Similarity=0.430 Sum_probs=78.1
Q ss_pred CCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcEE
Q 021360 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (313)
Q Consensus 90 ~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i 169 (313)
.+++|++.++|+.|++.|++++++|+.....+.... +.+|+. +.++.+... +||++..+..+++.+++++++|+
T Consensus 126 d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~-~~lgi~---~~~v~a~~~--~kP~~k~~~~~i~~l~~~~~~v~ 199 (215)
T PF00702_consen 126 DPLRPGAKEALQELKEAGIKVAILTGDNESTASAIA-KQLGIF---DSIVFARVI--GKPEPKIFLRIIKELQVKPGEVA 199 (215)
T ss_dssp EEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHH-HHTTSC---SEEEEESHE--TTTHHHHHHHHHHHHTCTGGGEE
T ss_pred CcchhhhhhhhhhhhccCcceeeeeccccccccccc-cccccc---ccccccccc--ccccchhHHHHHHHHhcCCCEEE
Confidence 467899999999999999999999999888888777 889994 433333322 78998999999999999999999
Q ss_pred EEecCHhhHHHHHHcC
Q 021360 170 VIEDSVIGVVAGKAAG 185 (313)
Q Consensus 170 ~vgD~~~Di~~a~~~G 185 (313)
||||+.||+.|+++||
T Consensus 200 ~vGDg~nD~~al~~Ag 215 (215)
T PF00702_consen 200 MVGDGVNDAPALKAAG 215 (215)
T ss_dssp EEESSGGHHHHHHHSS
T ss_pred EEccCHHHHHHHHhCc
Confidence 9999999999999987
No 85
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.55 E-value=1.4e-14 Score=113.69 Aligned_cols=100 Identities=18% Similarity=0.205 Sum_probs=81.3
Q ss_pred HHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhH
Q 021360 99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGV 178 (313)
Q Consensus 99 ~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~Di 178 (313)
.+++|++.|++++++|+.+...+...+ +++|+..+|+ + .+|+++.+.++++++++++++|++|||+.+|+
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l-~~~gi~~~~~----~-----~~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~ 105 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRC-KTLGITHLYQ----G-----QSNKLIAFSDILEKLALAPENVAYIGDDLIDW 105 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHH-HHcCCCEEEe----c-----ccchHHHHHHHHHHcCCCHHHEEEECCCHHHH
Confidence 689999999999999999998888777 8899865543 2 36889999999999999999999999999999
Q ss_pred HHHHHcCCeEEEeCCCCCccccccccceeeccc
Q 021360 179 VAGKAAGMEVVAVPSLPKQTHRYTAADEVINSL 211 (313)
Q Consensus 179 ~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~~l 211 (313)
.+++.+|+. +.+.... +.....++.++.+-
T Consensus 106 ~~~~~ag~~-~~v~~~~--~~~~~~a~~i~~~~ 135 (154)
T TIGR01670 106 PVMEKVGLS-VAVADAH--PLLIPRADYVTRIA 135 (154)
T ss_pred HHHHHCCCe-EecCCcC--HHHHHhCCEEecCC
Confidence 999999998 4444422 22344567777655
No 86
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.55 E-value=7.2e-14 Score=116.23 Aligned_cols=99 Identities=15% Similarity=0.112 Sum_probs=79.3
Q ss_pred ccCCCCchHHHHHHHHHHCCCCEEEEeCCc----hHHHHHHHHhhcCC--ccccceEEecCCCCCCCCChHHHHHHHHHc
Q 021360 88 CKVKALPGANRLIKHLSCHGVPMALASNSH----RATIESKISYQHGW--NESFSVIVGSDEVRTGKPSPDIFLEAAKRL 161 (313)
Q Consensus 88 ~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~----~~~~~~~l~~~~~~--~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~ 161 (313)
....++||+.++|+.++++|++++++|+.. ....+..+ +.+|+ ..+|+.+++++.. .|+++.. .++++
T Consensus 111 ~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Ll-k~~gip~~~~f~vil~gd~~--~K~~K~~---~l~~~ 184 (237)
T PRK11009 111 EFSIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLA-DDFHIPADNMNPVIFAGDKP--GQYTKTQ---WLKKK 184 (237)
T ss_pred ccCcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHH-HHcCCCcccceeEEEcCCCC--CCCCHHH---HHHhc
Confidence 347899999999999999999999999964 34455444 67899 8889888887753 5666543 44555
Q ss_pred CCCCCcEEEEecCHhhHHHHHHcCCeEEEeCCCCC
Q 021360 162 NMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPK 196 (313)
Q Consensus 162 ~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~ 196 (313)
++ +++|||+.+|+.+|+++|++++.+.++..
T Consensus 185 ~i----~I~IGDs~~Di~aA~~AGi~~I~v~~G~~ 215 (237)
T PRK11009 185 NI----RIFYGDSDNDITAAREAGARGIRILRAAN 215 (237)
T ss_pred CC----eEEEcCCHHHHHHHHHcCCcEEEEecCCC
Confidence 55 89999999999999999999999988543
No 87
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.54 E-value=6.4e-14 Score=122.56 Aligned_cols=105 Identities=17% Similarity=0.112 Sum_probs=94.1
Q ss_pred cCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCcc-ccceEEecC-------CCCCCCCChHHHHHHHHH
Q 021360 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE-SFSVIVGSD-------EVRTGKPSPDIFLEAAKR 160 (313)
Q Consensus 89 ~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~-~f~~v~~~~-------~~~~~kp~~~~~~~~~~~ 160 (313)
...++|++.++++.|++.|++++++|+.+....+..+ +.+++.. +|+.+++.+ +...+||+|+.+..++++
T Consensus 185 ~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l-~~l~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~ 263 (300)
T PHA02530 185 EDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTV-EWLRQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWE 263 (300)
T ss_pred cCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHH-HHHHHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHH
Confidence 3578999999999999999999999999999888777 7788886 899888887 345689999999999999
Q ss_pred cCC-CCCcEEEEecCHhhHHHHHHcCCeEEEeCCC
Q 021360 161 LNM-EPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL 194 (313)
Q Consensus 161 ~~~-~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~ 194 (313)
++. ++++|++|||+.+|+.+|+++|+.++.+.++
T Consensus 264 ~~~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v~~g 298 (300)
T PHA02530 264 KIAPKYDVLLAVDDRDQVVDMWRRIGLECWQVAPG 298 (300)
T ss_pred HhccCceEEEEEcCcHHHHHHHHHhCCeEEEecCC
Confidence 888 6799999999999999999999999999764
No 88
>PRK11590 hypothetical protein; Provisional
Probab=99.53 E-value=8.3e-13 Score=109.35 Aligned_cols=176 Identities=14% Similarity=0.096 Sum_probs=105.3
Q ss_pred CccEEEEecCCccccChHHHHHHHHHHH-HHcCCCCC-hhhhhhhcCCCHHHHHHH-------HHHHhCCCCCHHHHHHH
Q 021360 8 LMSCVILDLDGTLLNTDGMFSEVLKTFL-VKYGKEWD-GREKHKIVGKTPLEEAAI-------IVEDYGLPCAKHEFVNE 78 (313)
Q Consensus 8 ~~k~vifDlDGTL~d~~~~~~~~~~~~~-~~~g~~~~-~~~~~~~~g~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 78 (313)
..|+++||+||||++.. ....+...+ ++++.... ........|.+....... ++.......+.+++ +.
T Consensus 5 ~~k~~iFD~DGTL~~~d--~~~~~~~~~~~~~g~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~ 81 (211)
T PRK11590 5 ERRVVFFDLDGTLHQQD--MFGSFLRYLLRRQPLNLLLVLPLLPVIGLGLLVKGRAARWPMSLLLWGCTFGHSEARL-QA 81 (211)
T ss_pred cceEEEEecCCCCcccc--hHHHHHHHHHHhcchhhHHHhHHHHHhccCcccchhhhhhhHHHHHHHHHcCCCHHHH-HH
Confidence 56799999999999443 333444444 77775532 244445555443322111 11111112233332 22
Q ss_pred HHHHHHhhh-ccCCCCchHHHHH-HHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecC--------CCC---
Q 021360 79 VYSMFSDHL-CKVKALPGANRLI-KHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD--------EVR--- 145 (313)
Q Consensus 79 ~~~~~~~~~-~~~~~~pgv~e~l-~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~--------~~~--- 145 (313)
..+.+.+.+ ....++||+.++| +.+++.|++++++|+++...++..+ +.+++.. .+.+++.. -.+
T Consensus 82 ~~~~f~~~~~~~~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il-~~l~~~~-~~~~i~t~l~~~~tg~~~g~~c 159 (211)
T PRK11590 82 LEADFVRWFRDNVTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVY-FDTPWLP-RVNLIASQMQRRYGGWVLTLRC 159 (211)
T ss_pred HHHHHHHHHHHhCcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHH-HHccccc-cCceEEEEEEEEEccEECCccC
Confidence 333333322 2257799999999 5788899999999999999998777 6666421 12333322 001
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEe
Q 021360 146 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 191 (313)
Q Consensus 146 ~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v 191 (313)
.+..+...+++ .++.+.+.+.+.|||.+|+.+.+-+|-++++-
T Consensus 160 ~g~~K~~~l~~---~~~~~~~~~~aY~Ds~~D~pmL~~a~~~~~vn 202 (211)
T PRK11590 160 LGHEKVAQLER---KIGTPLRLYSGYSDSKQDNPLLYFCQHRWRVT 202 (211)
T ss_pred CChHHHHHHHH---HhCCCcceEEEecCCcccHHHHHhCCCCEEEC
Confidence 22223333333 33667788899999999999999999986543
No 89
>PRK10444 UMP phosphatase; Provisional
Probab=99.50 E-value=9.4e-14 Score=117.34 Aligned_cols=72 Identities=24% Similarity=0.340 Sum_probs=60.6
Q ss_pred CCCCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEeCCCCCcccc----ccccceeeccccccC
Q 021360 144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHR----YTAADEVINSLLDLR 215 (313)
Q Consensus 144 ~~~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~-~Di~~a~~~G~~~i~v~~~~~~~~~----~~~s~~ii~~l~e~~ 215 (313)
...+||+|+.+..+++++++++++|+||||+. .|+.+|+++|+.++++.++....+. ...++++++++.++.
T Consensus 170 ~~~gKP~~~~~~~~~~~~~~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV~~G~~~~~~l~~~~~~pd~~~~sl~el~ 246 (248)
T PRK10444 170 FYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSTLDDIDSMPFRPSWIYPSVADID 246 (248)
T ss_pred cccCCCCHHHHHHHHHHcCCCcccEEEECCCcHHHHHHHHHcCCCEEEECCCCCCHHHHhcCCCCCCEEECCHHHhh
Confidence 33689999999999999999999999999997 8999999999999999886544322 235888888887753
No 90
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=99.48 E-value=1.2e-13 Score=117.20 Aligned_cols=77 Identities=27% Similarity=0.392 Sum_probs=60.9
Q ss_pred eEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEeCCCCCcccc----ccccceeeccc
Q 021360 137 VIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHR----YTAADEVINSL 211 (313)
Q Consensus 137 ~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~-~Di~~a~~~G~~~i~v~~~~~~~~~----~~~s~~ii~~l 211 (313)
...+.+.+..+||+|+.++.+++++++++++++||||+. .|+.+|+++|++++++.++...... ...++.+++++
T Consensus 167 ~~~~~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~v~v~~G~~~~~~~~~~~~~pd~~v~~l 246 (249)
T TIGR01457 167 VATGVKPVYIGKPNAIIMEKAVEHLGTEREETLMVGDNYLTDIRAGIDAGIDTLLVHTGVTKAEEVAGLPIAPTHVVSSL 246 (249)
T ss_pred HHhCCCccccCCChHHHHHHHHHHcCCCcccEEEECCCchhhHHHHHHcCCcEEEEcCCCCCHHHHhcCCCCCCEEeCCh
Confidence 334445556789999999999999999999999999997 7999999999999999886543221 12467777766
Q ss_pred cc
Q 021360 212 LD 213 (313)
Q Consensus 212 ~e 213 (313)
.+
T Consensus 247 ~~ 248 (249)
T TIGR01457 247 AE 248 (249)
T ss_pred hh
Confidence 54
No 91
>PLN02645 phosphoglycolate phosphatase
Probab=99.45 E-value=1e-13 Score=121.47 Aligned_cols=105 Identities=21% Similarity=0.235 Sum_probs=74.6
Q ss_pred CEEEEeCCchHH-HHHHHHhhcCCccccceEEecCCCC---CCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHH
Q 021360 109 PMALASNSHRAT-IESKISYQHGWNESFSVIVGSDEVR---TGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKA 183 (313)
Q Consensus 109 ~~~i~s~~~~~~-~~~~l~~~~~~~~~f~~v~~~~~~~---~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~-~Di~~a~~ 183 (313)
...++||.+..+ ....+ ...+...+|+.+....... .+||+|..+..+++++++++++++||||+. +|+.+|++
T Consensus 188 ~~~i~tn~d~~~~~~~~~-~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~A~~ 266 (311)
T PLN02645 188 CLFIATNRDAVTHLTDAQ-EWAGAGSMVGAIKGSTEREPLVVGKPSTFMMDYLANKFGIEKSQICMVGDRLDTDILFGQN 266 (311)
T ss_pred CEEEEeCCCCCCCCCCCC-CccchHHHHHHHHHHhCCCcccCCCChHHHHHHHHHHcCCCcccEEEEcCCcHHHHHHHHH
Confidence 356666666533 11122 3345555555554443322 469999999999999999999999999997 89999999
Q ss_pred cCCeEEEeCCCCCcccc------ccccceeecccccc
Q 021360 184 AGMEVVAVPSLPKQTHR------YTAADEVINSLLDL 214 (313)
Q Consensus 184 ~G~~~i~v~~~~~~~~~------~~~s~~ii~~l~e~ 214 (313)
+|+.+++|.++...... ...++.+++++.++
T Consensus 267 aG~~~ilV~~G~~~~~~~~~~~~~~~pd~~~~~~~~l 303 (311)
T PLN02645 267 GGCKTLLVLSGVTSESMLLSPENKIQPDFYTSKISDF 303 (311)
T ss_pred cCCCEEEEcCCCCCHHHHHhccCCCCCCEEECCHHHH
Confidence 99999999876543221 13578888888765
No 92
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=99.40 E-value=5.9e-13 Score=107.58 Aligned_cols=98 Identities=18% Similarity=0.259 Sum_probs=76.4
Q ss_pred HHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhH
Q 021360 99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGV 178 (313)
Q Consensus 99 ~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~Di 178 (313)
.++.|+++|++++++|+.+...+...+ +.+++..+|+ + .+++++.++.+++++|+++++|+||||+.+|+
T Consensus 56 ~i~~L~~~Gi~v~I~T~~~~~~v~~~l-~~lgl~~~f~----g-----~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~ 125 (183)
T PRK09484 56 GIRCLLTSGIEVAIITGRKSKLVEDRM-TTLGITHLYQ----G-----QSNKLIAFSDLLEKLAIAPEQVAYIGDDLIDW 125 (183)
T ss_pred HHHHHHHCCCEEEEEeCCCcHHHHHHH-HHcCCceeec----C-----CCcHHHHHHHHHHHhCCCHHHEEEECCCHHHH
Confidence 466677899999999999999888878 8888855443 2 35667999999999999999999999999999
Q ss_pred HHHHHcCCeEEEeCCCCCccccccccceeec
Q 021360 179 VAGKAAGMEVVAVPSLPKQTHRYTAADEVIN 209 (313)
Q Consensus 179 ~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~ 209 (313)
.+++.+|+.++ +.. ........++++++
T Consensus 126 ~~a~~aG~~~~-v~~--~~~~~~~~a~~v~~ 153 (183)
T PRK09484 126 PVMEKVGLSVA-VAD--AHPLLLPRADYVTR 153 (183)
T ss_pred HHHHHCCCeEe-cCC--hhHHHHHhCCEEec
Confidence 99999999854 432 11222234666664
No 93
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=99.39 E-value=1.4e-11 Score=101.90 Aligned_cols=169 Identities=17% Similarity=0.155 Sum_probs=111.6
Q ss_pred EEEEecCCccccChHHHHHHHHHHHHHcCCCCChhhhhhhcC-CCHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhhhc
Q 021360 11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVG-KTPLEEAAIIVEDYGLP-CAKHEFVNEVYSMFSDHLC 88 (313)
Q Consensus 11 ~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 88 (313)
+++||+|+||+|.+... .+++.++.......+..... ..+.+....+++.+... .+.++ +.+...
T Consensus 2 LvvfDFD~TIvd~dsd~-----~v~~~l~~~~~~~~l~~~~~~~~wt~~m~~vl~~L~~~gvt~~~--------I~~~l~ 68 (234)
T PF06888_consen 2 LVVFDFDHTIVDQDSDD-----WVIELLPPEELPEELRESYPKGGWTEYMDRVLQLLHEQGVTPED--------IRDALR 68 (234)
T ss_pred EEEEeCCCCccCCccHH-----HHHHhcCCcccHHHHHHhccccchHHHHHHHHHHHHHcCCCHHH--------HHHHHH
Confidence 58999999999875432 22334443322223222222 22334444444443211 12222 233346
Q ss_pred cCCCCchHHHHHHHH--HHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecC-----------------CCC---C
Q 021360 89 KVKALPGANRLIKHL--SCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD-----------------EVR---T 146 (313)
Q Consensus 89 ~~~~~pgv~e~l~~l--~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~-----------------~~~---~ 146 (313)
.+++.||+.++++.+ .+.|+.++++|++...+++..| ++.|+...|+.|++-. .+. .
T Consensus 69 ~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL-~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~h~C~~C~~ 147 (234)
T PF06888_consen 69 SIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETIL-EHHGLRDCFSEIFTNPACFDADGRLRVRPYHSHGCSLCPP 147 (234)
T ss_pred cCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHH-HhCCCccccceEEeCCceecCCceEEEeCccCCCCCcCCC
Confidence 789999999999999 4579999999999999999999 8899998887776531 011 1
Q ss_pred CCCChHHHHHHHHH---cCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCC
Q 021360 147 GKPSPDIFLEAAKR---LNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 147 ~kp~~~~~~~~~~~---~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~ 193 (313)
..-+...+.+++.. -|...++++||||+.||+..+.+++-.-++.++
T Consensus 148 NmCK~~il~~~~~~~~~~g~~~~rviYiGDG~nD~Cp~~~L~~~D~v~~R 197 (234)
T PF06888_consen 148 NMCKGKILERLLQEQAQRGVPYDRVIYIGDGRNDFCPALRLRPRDVVFPR 197 (234)
T ss_pred ccchHHHHHHHHHHHhhcCCCcceEEEECCCCCCcCcccccCCCCEEecC
Confidence 12245666666665 377889999999999999999988776555555
No 94
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=99.38 E-value=8.8e-12 Score=98.32 Aligned_cols=103 Identities=22% Similarity=0.322 Sum_probs=81.8
Q ss_pred cCCCCchHHHHHHHHHHCCCCEEEEeCCch---------------HHHHHHHHhhcCCccccceEEecC-----CCCCCC
Q 021360 89 KVKALPGANRLIKHLSCHGVPMALASNSHR---------------ATIESKISYQHGWNESFSVIVGSD-----EVRTGK 148 (313)
Q Consensus 89 ~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~---------------~~~~~~l~~~~~~~~~f~~v~~~~-----~~~~~k 148 (313)
.+.+.|++.+.+..+++.|++++++||.+- ..+...+ +..|+ .|+.++.+. .+..+|
T Consensus 29 ~~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l-~~~gv--~id~i~~Cph~p~~~c~cRK 105 (181)
T COG0241 29 DFQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKIL-ASQGV--KIDGILYCPHHPEDNCDCRK 105 (181)
T ss_pred HhccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHH-HHcCC--ccceEEECCCCCCCCCcccC
Confidence 357889999999999999999999999531 1233333 33443 346555432 256899
Q ss_pred CChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCCC
Q 021360 149 PSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL 194 (313)
Q Consensus 149 p~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~ 194 (313)
|++.++..+++++++++++.++|||+..|+++|.++|++.+.+.++
T Consensus 106 P~~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~~~~~~~~ 151 (181)
T COG0241 106 PKPGMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGIKGVLVLTG 151 (181)
T ss_pred CChHHHHHHHHHhCCCccceEEecCcHHHHHHHHHCCCCceEEEcC
Confidence 9999999999999999999999999999999999999997776664
No 95
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.37 E-value=2.3e-12 Score=113.45 Aligned_cols=91 Identities=22% Similarity=0.148 Sum_probs=82.2
Q ss_pred CCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhh----cCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCC
Q 021360 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQ----HGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS 166 (313)
Q Consensus 91 ~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~----~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~ 166 (313)
.++|++.++|+.|++.|+.++++|+++...+...+ ++ +++.++|+.+... .||+++.++.++++++++++
T Consensus 31 ~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l-~~~~~~~~~~~~f~~~~~~-----~~pk~~~i~~~~~~l~i~~~ 104 (320)
T TIGR01686 31 PLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVF-ERRKDFILQAEDFDARSIN-----WGPKSESLRKIAKKLNLGTD 104 (320)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHH-HhCccccCcHHHeeEEEEe-----cCchHHHHHHHHHHhCCCcC
Confidence 35789999999999999999999999999998888 66 7888888887654 57999999999999999999
Q ss_pred cEEEEecCHhhHHHHHHcCCe
Q 021360 167 SSLVIEDSVIGVVAGKAAGME 187 (313)
Q Consensus 167 ~~i~vgD~~~Di~~a~~~G~~ 187 (313)
+++||||++.|+.+++++...
T Consensus 105 ~~vfidD~~~d~~~~~~~lp~ 125 (320)
T TIGR01686 105 SFLFIDDNPAERANVKITLPV 125 (320)
T ss_pred cEEEECCCHHHHHHHHHHCCC
Confidence 999999999999999997764
No 96
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=99.37 E-value=7.9e-11 Score=90.71 Aligned_cols=105 Identities=17% Similarity=0.165 Sum_probs=81.7
Q ss_pred cCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHH--HhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCC
Q 021360 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKI--SYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS 166 (313)
Q Consensus 89 ~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l--~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~ 166 (313)
...+||++.+.+++.++.|+++++.|.++....+-.. .....+..+|+..+.. ....|-...-+.+++...|++|.
T Consensus 101 kahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fghs~agdL~~lfsGyfDt--tiG~KrE~~SY~kIa~~iGl~p~ 178 (229)
T COG4229 101 KAHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFGHSDAGDLNSLFSGYFDT--TIGKKRESQSYAKIAGDIGLPPA 178 (229)
T ss_pred ccccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhcccccccHHhhhcceeec--cccccccchhHHHHHHhcCCCch
Confidence 3678999999999999999999999998876554333 1122344444444332 12355566789999999999999
Q ss_pred cEEEEecCHhhHHHHHHcCCeEEEeCCCC
Q 021360 167 SSLVIEDSVIGVVAGKAAGMEVVAVPSLP 195 (313)
Q Consensus 167 ~~i~vgD~~~Di~~a~~~G~~~i~v~~~~ 195 (313)
+++++-|.++.+.+|+.+|+.+..+.+..
T Consensus 179 eilFLSDn~~EL~AA~~vGl~t~l~~R~g 207 (229)
T COG4229 179 EILFLSDNPEELKAAAGVGLATGLAVRPG 207 (229)
T ss_pred heEEecCCHHHHHHHHhcchheeeeecCC
Confidence 99999999999999999999999988743
No 97
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=99.36 E-value=5.4e-12 Score=108.84 Aligned_cols=114 Identities=13% Similarity=0.048 Sum_probs=73.1
Q ss_pred CCchHHHHHHHHHHCCCCEEEEeCCch-----HHHHHHHHhhcCCccccceEEec----CCCCCCCCChHHHHHHHHHcC
Q 021360 92 ALPGANRLIKHLSCHGVPMALASNSHR-----ATIESKISYQHGWNESFSVIVGS----DEVRTGKPSPDIFLEAAKRLN 162 (313)
Q Consensus 92 ~~pgv~e~l~~l~~~g~~~~i~s~~~~-----~~~~~~l~~~~~~~~~f~~v~~~----~~~~~~kp~~~~~~~~~~~~~ 162 (313)
.++++.++++.+...+....++++.+. ...+... +.+++. ...+. +-...+..++..++.+++.+|
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~----~~~s~~~~~ei~~~~~~K~~~l~~l~~~~g 212 (272)
T PRK10530 138 TFTQVDSLAQAARQVNAIWKFALTHEDLPQLQHFAKHVE-HELGLE----CEWSWHDQVDIARKGNSKGKRLTQWVEAQG 212 (272)
T ss_pred ceEEcccHHHHHhhcCCcEEEEEecCCHHHHHHHHHHHh-hhcCce----EEEecCceEEEecCCCChHHHHHHHHHHcC
Confidence 345667777777666665666665432 2222222 444432 11111 112244456789999999999
Q ss_pred CCCCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCccccccccceeeccccc
Q 021360 163 MEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD 213 (313)
Q Consensus 163 ~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~~l~e 213 (313)
++++++++|||+.||++|++.+|+.+.+-+ ..+.....++.++.+-.+
T Consensus 213 i~~~e~i~~GD~~NDi~m~~~ag~~vamgn---a~~~lk~~Ad~v~~~n~~ 260 (272)
T PRK10530 213 WSMKNVVAFGDNFNDISMLEAAGLGVAMGN---ADDAVKARADLVIGDNTT 260 (272)
T ss_pred CCHHHeEEeCCChhhHHHHHhcCceEEecC---chHHHHHhCCEEEecCCC
Confidence 999999999999999999999998655432 233444567888876654
No 98
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.36 E-value=1.1e-12 Score=102.26 Aligned_cols=96 Identities=16% Similarity=0.075 Sum_probs=85.4
Q ss_pred cCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCcc-ccceEEecCCCCCCCCChHHHHHHHHHcCCCCCc
Q 021360 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE-SFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (313)
Q Consensus 89 ~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~-~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 167 (313)
...++||+.++|+.|+ .+++++++|++...+++..+ +++++.. +|+.+++++++...||+ +.+++++++.+|++
T Consensus 43 ~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il-~~l~~~~~~f~~i~~~~d~~~~KP~---~~k~l~~l~~~p~~ 117 (148)
T smart00577 43 YVKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVL-DLLDPKKYFGYRRLFRDECVFVKGK---YVKDLSLLGRDLSN 117 (148)
T ss_pred EEEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHH-HHhCcCCCEeeeEEECccccccCCe---EeecHHHcCCChhc
Confidence 4678999999999998 56999999999999999888 7788855 45999999999888886 88888999999999
Q ss_pred EEEEecCHhhHHHHHHcCCeEE
Q 021360 168 SLVIEDSVIGVVAGKAAGMEVV 189 (313)
Q Consensus 168 ~i~vgD~~~Di~~a~~~G~~~i 189 (313)
|++|||+..|+.++.++|+.+-
T Consensus 118 ~i~i~Ds~~~~~aa~~ngI~i~ 139 (148)
T smart00577 118 VIIIDDSPDSWPFHPENLIPIK 139 (148)
T ss_pred EEEEECCHHHhhcCccCEEEec
Confidence 9999999999999999997543
No 99
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.35 E-value=1.1e-12 Score=110.96 Aligned_cols=98 Identities=23% Similarity=0.384 Sum_probs=80.4
Q ss_pred CchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceE--EecCCCCCCCCChHHHHHHHHHcCCC-CCcEE
Q 021360 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVI--VGSDEVRTGKPSPDIFLEAAKRLNME-PSSSL 169 (313)
Q Consensus 93 ~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v--~~~~~~~~~kp~~~~~~~~~~~~~~~-~~~~i 169 (313)
++++.++++.+.++|+++ ++||.+..+....+ ..++...++..+ .+++....+||+|+.++.++++++.. +++|+
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~-~~~~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~ 217 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGI-YRYGAGYYAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKNRML 217 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCc-eEecccHHHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcccEE
Confidence 689999999998889987 88998887765444 566666666644 45555568999999999999999875 67899
Q ss_pred EEecC-HhhHHHHHHcCCeEEEeC
Q 021360 170 VIEDS-VIGVVAGKAAGMEVVAVP 192 (313)
Q Consensus 170 ~vgD~-~~Di~~a~~~G~~~i~v~ 192 (313)
||||+ ..|+.+|+++|+.++++.
T Consensus 218 ~vGD~~~~Di~~a~~~G~~~i~v~ 241 (242)
T TIGR01459 218 MVGDSFYTDILGANRLGIDTALVL 241 (242)
T ss_pred EECCCcHHHHHHHHHCCCeEEEEe
Confidence 99999 599999999999999874
No 100
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.35 E-value=6.2e-12 Score=115.82 Aligned_cols=92 Identities=22% Similarity=0.317 Sum_probs=77.8
Q ss_pred CCchHHHHHHHHHHCCCCEEEEeCCch------------HHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHH
Q 021360 92 ALPGANRLIKHLSCHGVPMALASNSHR------------ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAK 159 (313)
Q Consensus 92 ~~pgv~e~l~~l~~~g~~~~i~s~~~~------------~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~ 159 (313)
++|++.+.|+.|++.|++++|+||.+. ..+...+ +.+|+. |+.+++.++...+||++.++..+++
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL-~~lgip--fdviia~~~~~~RKP~pGm~~~a~~ 274 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIV-AKLGVP--FQVFIAIGAGFYRKPLTGMWDHLKE 274 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHH-HHcCCc--eEEEEeCCCCCCCCCCHHHHHHHHH
Confidence 689999999999999999999999876 3455566 777874 7888888887889999999999999
Q ss_pred HcC----CCCCcEEEEecCHhhHHHHHHcCC
Q 021360 160 RLN----MEPSSSLVIEDSVIGVVAGKAAGM 186 (313)
Q Consensus 160 ~~~----~~~~~~i~vgD~~~Di~~a~~~G~ 186 (313)
+++ +++++++||||...|+.+++.+|-
T Consensus 275 ~~~~~~~Id~~~S~~VGDaagr~~~g~~ag~ 305 (526)
T TIGR01663 275 EANDGTEIQEDDCFFVGDAAGRPANGKAAGK 305 (526)
T ss_pred hcCcccCCCHHHeEEeCCcccchHHHHhcCC
Confidence 884 899999999999988776655553
No 101
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=99.32 E-value=9.4e-11 Score=96.69 Aligned_cols=117 Identities=11% Similarity=0.045 Sum_probs=73.9
Q ss_pred CHHHHHHHHHHHHHhhhccCCCCchHHHHHH-HHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecC-CC---C
Q 021360 71 AKHEFVNEVYSMFSDHLCKVKALPGANRLIK-HLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD-EV---R 145 (313)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~pgv~e~l~-~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~-~~---~ 145 (313)
+.+++.+...+..+.......++|++.+.|+ .+++.|++++++|+++...++... +..++... +.+++.. .+ +
T Consensus 74 ~~~~l~~~~~~f~~~~~~~~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia-~~~~~~~~-~~~i~t~le~~~gg 151 (210)
T TIGR01545 74 REAHLQDLEADFVAAFRDKVTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVY-FDSNFIHR-LNLIASQIERGNGG 151 (210)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHH-Hhcccccc-CcEEEEEeEEeCCc
Confidence 3444433333333332233468999999996 788899999999999999888777 54333221 2222221 11 1
Q ss_pred -------CCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeC
Q 021360 146 -------TGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVP 192 (313)
Q Consensus 146 -------~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~ 192 (313)
.+..+...+++ .++.+.+.+.+.|||.+|+.+.+.+|.++.+-+
T Consensus 152 ~~~g~~c~g~~Kv~rl~~---~~~~~~~~~~aYsDS~~D~pmL~~a~~~~~Vnp 202 (210)
T TIGR01545 152 WVLPLRCLGHEKVAQLEQ---KIGSPLKLYSGYSDSKQDNPLLAFCEHRWRVSK 202 (210)
T ss_pred eEcCccCCChHHHHHHHH---HhCCChhheEEecCCcccHHHHHhCCCcEEECc
Confidence 22222333333 335566788999999999999999999865443
No 102
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=99.28 E-value=8.2e-11 Score=99.25 Aligned_cols=72 Identities=28% Similarity=0.447 Sum_probs=61.0
Q ss_pred CCCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEeCCCCCcccc----ccccceeeccccccCc
Q 021360 145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHR----YTAADEVINSLLDLRP 216 (313)
Q Consensus 145 ~~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~-~Di~~a~~~G~~~i~v~~~~~~~~~----~~~s~~ii~~l~e~~~ 216 (313)
-.+||++.+++.+++.++.++++++||||+. .||.+|+++|+.++.|.++....+. ...++++++++.+...
T Consensus 187 ~~GKP~~~i~~~al~~~~~~~~~~~mVGD~~~TDI~~a~~~G~~t~LV~TGv~~~~~~~~~~~~p~~v~~sl~~~~~ 263 (269)
T COG0647 187 VIGKPSPAIYEAALEKLGLDRSEVLMVGDRLDTDILGAKAAGLDTLLVLTGVSSAEDLDRAEVKPTYVVDSLAELIT 263 (269)
T ss_pred ccCCCCHHHHHHHHHHhCCCcccEEEEcCCchhhHHHHHHcCCCEEEEccCCCChhhhhhhccCCcchHhhHHHHHh
Confidence 3799999999999999999999999999999 6999999999999999997653322 2457888888877643
No 103
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=99.27 E-value=9e-11 Score=99.31 Aligned_cols=96 Identities=20% Similarity=0.266 Sum_probs=79.5
Q ss_pred ccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceE------EecCCCCCCCCCh---------H
Q 021360 88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVI------VGSDEVRTGKPSP---------D 152 (313)
Q Consensus 88 ~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v------~~~~~~~~~kp~~---------~ 152 (313)
..+.+.||+.++++.|++.|++++++|++....++..+ +++++...+..+ +..+.+..+++.| .
T Consensus 118 ~~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL-~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~ 196 (277)
T TIGR01544 118 SDVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVL-RQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHD 196 (277)
T ss_pred cCCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHH-HHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHH
Confidence 36899999999999999999999999999999999888 778886666555 4344444556666 5
Q ss_pred HHHHHHHHcC--CCCCcEEEEecCHhhHHHHHHc
Q 021360 153 IFLEAAKRLN--MEPSSSLVIEDSVIGVVAGKAA 184 (313)
Q Consensus 153 ~~~~~~~~~~--~~~~~~i~vgD~~~Di~~a~~~ 184 (313)
.++...+.++ .++++|+++||+.+|+.||...
T Consensus 197 v~~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~ 230 (277)
T TIGR01544 197 VALRNTEYFNQLKDRSNIILLGDSQGDLRMADGV 230 (277)
T ss_pred HHHHHHHHhCccCCcceEEEECcChhhhhHhcCC
Confidence 6667778888 8999999999999999998766
No 104
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=99.26 E-value=8.4e-10 Score=96.41 Aligned_cols=105 Identities=18% Similarity=0.201 Sum_probs=84.7
Q ss_pred cCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhc-C-------CccccceEEecCCCC---------------
Q 021360 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQH-G-------WNESFSVIVGSDEVR--------------- 145 (313)
Q Consensus 89 ~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~-~-------~~~~f~~v~~~~~~~--------------- 145 (313)
.+...|++.++|+.|++.|++++++||++..+++..+ +.+ + +.++||.|+++..-+
T Consensus 182 yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im-~~l~g~~~~~~~w~~yFD~IIt~a~KP~FF~~~~pf~~v~~~ 260 (343)
T TIGR02244 182 YVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGM-KYLLGPFLGEHDWRDYFDVVIVDARKPGFFTEGRPFRQVDVE 260 (343)
T ss_pred HhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHhhCCcccccchHhhCcEEEeCCCCCcccCCCCceEEEeCC
Confidence 3567999999999999999999999999999999888 654 6 889999998864211
Q ss_pred --CCCCC------------hHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHH-HcCCeEEEeCCC
Q 021360 146 --TGKPS------------PDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGK-AAGMEVVAVPSL 194 (313)
Q Consensus 146 --~~kp~------------~~~~~~~~~~~~~~~~~~i~vgD~~-~Di~~a~-~~G~~~i~v~~~ 194 (313)
..++. ...+....+.++.+++++++|||+. .|+..++ .+||++++|.+.
T Consensus 261 ~g~~~~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI~pE 325 (343)
T TIGR02244 261 TGSLKWGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYFGDHIYGDLLRSKKKRGWRTAAIIPE 325 (343)
T ss_pred CCcccCCccccccCCCeEeCCCHHHHHHHHCCCCCcEEEECCcchHHHHhhHHhcCcEEEEEchh
Confidence 00100 0224566678899999999999999 6999998 999999999883
No 105
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=99.25 E-value=2.3e-11 Score=102.37 Aligned_cols=48 Identities=29% Similarity=0.579 Sum_probs=44.7
Q ss_pred CCCCChHHHHHHHHHcCCCCCcE-EEEecCH-hhHHHHHHcCCeEEEeCC
Q 021360 146 TGKPSPDIFLEAAKRLNMEPSSS-LVIEDSV-IGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 146 ~~kp~~~~~~~~~~~~~~~~~~~-i~vgD~~-~Di~~a~~~G~~~i~v~~ 193 (313)
.+||++..++.++++++++++++ +||||+. .|+.+|+++|++++++.+
T Consensus 186 ~~KP~~~~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~~G~~~i~v~~ 235 (236)
T TIGR01460 186 VGKPSPAIYRAALNLLQARPERRDVMVGDNLRTDILGAKNAGFDTLLVLT 235 (236)
T ss_pred ecCCCHHHHHHHHHHhCCCCccceEEECCCcHHHHHHHHHCCCcEEEEec
Confidence 67999999999999999999887 9999998 799999999999999864
No 106
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=99.23 E-value=3.8e-11 Score=82.14 Aligned_cols=68 Identities=32% Similarity=0.496 Sum_probs=60.4
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEecC-HhhHHHHHHcCCeEEEeCCCCCcccc----ccccceeeccccc
Q 021360 146 TGKPSPDIFLEAAKRLNMEPSSSLVIEDS-VIGVVAGKAAGMEVVAVPSLPKQTHR----YTAADEVINSLLD 213 (313)
Q Consensus 146 ~~kp~~~~~~~~~~~~~~~~~~~i~vgD~-~~Di~~a~~~G~~~i~v~~~~~~~~~----~~~s~~ii~~l~e 213 (313)
.+||+|.++..+++++++++++|++|||+ ..|+.+|+++|+.+++|.++....+. ...+++++++|.|
T Consensus 2 ~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~~~~~~~~~~~pd~vv~~l~e 74 (75)
T PF13242_consen 2 CGKPSPGMLEQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYSPEDLEKAEHKPDYVVDDLKE 74 (75)
T ss_dssp CSTTSHHHHHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSCCCGHHHSSSTTSEEESSGGG
T ss_pred CCCCcHHHHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCCHHHHhccCCCCCEEECCHHh
Confidence 58999999999999999999999999999 79999999999999999997654433 2479999999876
No 107
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=99.21 E-value=9.6e-11 Score=92.06 Aligned_cols=103 Identities=17% Similarity=0.185 Sum_probs=71.3
Q ss_pred ccCCCCchHHHHHHHHHHCCCCEEEEeCCc-hHHHHHHHHhhcCCc----------cccceEEecCCCCCCCCChHHHHH
Q 021360 88 CKVKALPGANRLIKHLSCHGVPMALASNSH-RATIESKISYQHGWN----------ESFSVIVGSDEVRTGKPSPDIFLE 156 (313)
Q Consensus 88 ~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~-~~~~~~~l~~~~~~~----------~~f~~v~~~~~~~~~kp~~~~~~~ 156 (313)
..+.++|++.++|+.|++.|++++++|.++ .+.++..| +.+++. ++|+..-... -.+..-|++
T Consensus 42 ~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L-~~l~i~~~~~~~~~~~~~F~~~eI~~-----gsK~~Hf~~ 115 (169)
T PF12689_consen 42 EEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELL-KLLEIDDADGDGVPLIEYFDYLEIYP-----GSKTTHFRR 115 (169)
T ss_dssp -EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHH-HHTT-C----------CCECEEEESS-----S-HHHHHHH
T ss_pred CEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHH-HhcCCCccccccccchhhcchhheec-----CchHHHHHH
Confidence 357899999999999999999999999654 45666667 888988 6666543332 256788999
Q ss_pred HHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCCCCC
Q 021360 157 AAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPK 196 (313)
Q Consensus 157 ~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~ 196 (313)
+.++.|++.+++++|+|...++....+.|+.++.++.+..
T Consensus 116 i~~~tgI~y~eMlFFDDe~~N~~~v~~lGV~~v~v~~Glt 155 (169)
T PF12689_consen 116 IHRKTGIPYEEMLFFDDESRNIEVVSKLGVTCVLVPDGLT 155 (169)
T ss_dssp HHHHH---GGGEEEEES-HHHHHHHHTTT-EEEE-SSS--
T ss_pred HHHhcCCChhHEEEecCchhcceeeEecCcEEEEeCCCCC
Confidence 9999999999999999999999999999999999988543
No 108
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=99.20 E-value=2.1e-11 Score=102.48 Aligned_cols=65 Identities=20% Similarity=0.174 Sum_probs=52.0
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCccccccccceeeccccc
Q 021360 146 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD 213 (313)
Q Consensus 146 ~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~~l~e 213 (313)
.+..++..++.+++.+|++++++++|||+.||++|++.+|+.+++-+. .+..+..++.+..+..+
T Consensus 154 ~~~~Kg~al~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~vam~Na---~~~vk~~a~~v~~~n~~ 218 (230)
T PRK01158 154 PGVNKGTGLKKLAELMGIDPEEVAAIGDSENDLEMFEVAGFGVAVANA---DEELKEAADYVTEKSYG 218 (230)
T ss_pred CCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhcCceEEecCc---cHHHHHhcceEecCCCc
Confidence 556678999999999999999999999999999999999998766544 33444457777765543
No 109
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.20 E-value=1.3e-10 Score=90.68 Aligned_cols=93 Identities=18% Similarity=0.186 Sum_probs=71.2
Q ss_pred ccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCcc--cc--------ceEEecCCCC----CCCCChHH
Q 021360 88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE--SF--------SVIVGSDEVR----TGKPSPDI 153 (313)
Q Consensus 88 ~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~--~f--------~~v~~~~~~~----~~kp~~~~ 153 (313)
..+.+.||+++++..|+++|.+++++|++-+.++..+. ..+|+.. .| +.-+.+++.. .+..+++.
T Consensus 85 ~k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va-~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~ 163 (227)
T KOG1615|consen 85 QKPTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVA-EQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEV 163 (227)
T ss_pred CCCccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHH-HHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHHH
Confidence 35789999999999999999999999999999888777 7788754 22 2222333322 34455677
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHHH
Q 021360 154 FLEAAKRLNMEPSSSLVIEDSVIGVVAGKA 183 (313)
Q Consensus 154 ~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~ 183 (313)
++.+.+ +++.+.++||||+.+|++|...
T Consensus 164 i~~lrk--~~~~~~~~mvGDGatDlea~~p 191 (227)
T KOG1615|consen 164 IALLRK--NYNYKTIVMVGDGATDLEAMPP 191 (227)
T ss_pred HHHHHh--CCChheeEEecCCccccccCCc
Confidence 766654 8899999999999999998655
No 110
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=99.16 E-value=1.7e-09 Score=95.18 Aligned_cols=69 Identities=14% Similarity=0.128 Sum_probs=54.4
Q ss_pred CCCCChHHHHHHHHHc--------CC-----CCCcEEEEecCH-hhHHHHHHcCCeEEEeCCCCCccc-c--ccccceee
Q 021360 146 TGKPSPDIFLEAAKRL--------NM-----EPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTH-R--YTAADEVI 208 (313)
Q Consensus 146 ~~kp~~~~~~~~~~~~--------~~-----~~~~~i~vgD~~-~Di~~a~~~G~~~i~v~~~~~~~~-~--~~~s~~ii 208 (313)
.+||++..|+.+++.+ +. ++++++||||+. .|+.+|+++|+.+++|.++..... . ...++.++
T Consensus 231 ~GKP~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~mIGD~~~tDI~ga~~~G~~silV~tG~~~~~~~~~~~~p~~vv 310 (321)
T TIGR01456 231 LGKPTKLTYDFAEDVLIDWEKRLSGTKPSTSPFHALYMVGDNPASDIIGAQNYGWFSCLVKTGVYNGGDDLKECKPTLIV 310 (321)
T ss_pred cCCCChHHHHHHHHHHHHHHhhhccccccCCChheEEEEcCChhhhhhhHHhCCceEEEecccccCCCCCCCCCCCCEEE
Confidence 5999999999988776 33 457999999999 899999999999999988632221 1 23478888
Q ss_pred cccccc
Q 021360 209 NSLLDL 214 (313)
Q Consensus 209 ~~l~e~ 214 (313)
+++.+.
T Consensus 311 ~~l~e~ 316 (321)
T TIGR01456 311 NDVFDA 316 (321)
T ss_pred CCHHHH
Confidence 888764
No 111
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=99.13 E-value=7.7e-11 Score=98.70 Aligned_cols=66 Identities=21% Similarity=0.179 Sum_probs=52.5
Q ss_pred CCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCccccccccceeeccccc
Q 021360 145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD 213 (313)
Q Consensus 145 ~~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~~l~e 213 (313)
..+.++...++.+++++|++++++++|||+.||+.|++.+|+.+++-+. .+.....++.+..+..+
T Consensus 145 ~~~~~K~~~i~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~vam~Na---~~~~k~~A~~vt~~~~~ 210 (225)
T TIGR01482 145 PQGVNKGVAVKKLKEKLGIKPGETLVCGDSENDIDLFEVPGFGVAVANA---QPELKEWADYVTESPYG 210 (225)
T ss_pred eCCCCHHHHHHHHHHHhCCCHHHEEEECCCHhhHHHHHhcCceEEcCCh---hHHHHHhcCeecCCCCC
Confidence 3566778899999999999999999999999999999999998766544 33444567777665443
No 112
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=99.10 E-value=6.6e-10 Score=90.57 Aligned_cols=85 Identities=21% Similarity=0.383 Sum_probs=62.6
Q ss_pred chHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCC----------C---CChHHHHHH---
Q 021360 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTG----------K---PSPDIFLEA--- 157 (313)
Q Consensus 94 pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~----------k---p~~~~~~~~--- 157 (313)
|++.++++.+++.|++++++|+++...++..+ +.+++.... +++....... . .+...++++
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~-~~~~i~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~~ 168 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIA-ERLGIDDDN--VIGNELFDNGGGIFTGRITGSNCGGKAEALKELYIR 168 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHH-HHTTSSEGG--EEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHH-HHcCCCceE--EEEEeeeecccceeeeeECCCCCCcHHHHHHHHHHH
Confidence 56669999999999999999999999998887 788885421 2222111000 0 255666666
Q ss_pred HHHcCCCCCcEEEEecCHhhHHHHH
Q 021360 158 AKRLNMEPSSSLVIEDSVIGVVAGK 182 (313)
Q Consensus 158 ~~~~~~~~~~~i~vgD~~~Di~~a~ 182 (313)
... +.+...++++||+.+|+.+++
T Consensus 169 ~~~-~~~~~~~~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 169 DEE-DIDPDRVIAIGDSINDLPMLR 192 (192)
T ss_dssp HHH-THTCCEEEEEESSGGGHHHHH
T ss_pred hhc-CCCCCeEEEEECCHHHHHHhC
Confidence 444 789999999999999999875
No 113
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=99.05 E-value=1.1e-09 Score=86.11 Aligned_cols=95 Identities=20% Similarity=0.311 Sum_probs=66.0
Q ss_pred CCchHHHHHHHHHHCCCCEEEEeCCc---h-----------HHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHH
Q 021360 92 ALPGANRLIKHLSCHGVPMALASNSH---R-----------ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEA 157 (313)
Q Consensus 92 ~~pgv~e~l~~l~~~g~~~~i~s~~~---~-----------~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~ 157 (313)
..|++.+.|+++.+.|+.++++||.. . ..+...+ +.+++. +...++...-..+||.+.++..+
T Consensus 30 ~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il-~~l~ip--~~~~~a~~~d~~RKP~~GM~~~~ 106 (159)
T PF08645_consen 30 FPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENIL-KELGIP--IQVYAAPHKDPCRKPNPGMWEFA 106 (159)
T ss_dssp C-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHH-HHCTS---EEEEECGCSSTTSTTSSHHHHHH
T ss_pred cchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHH-HHcCCc--eEEEecCCCCCCCCCchhHHHHH
Confidence 34579999999999999999999872 1 1233333 556654 23444444446899999999999
Q ss_pred HHHcC----CCCCcEEEEecC-----------HhhHHHHHHcCCeEE
Q 021360 158 AKRLN----MEPSSSLVIEDS-----------VIGVVAGKAAGMEVV 189 (313)
Q Consensus 158 ~~~~~----~~~~~~i~vgD~-----------~~Di~~a~~~G~~~i 189 (313)
++.++ ++.++++||||. ..|..-|.++|++..
T Consensus 107 ~~~~~~~~~id~~~Sf~VGDaagr~~~~~d~s~~D~~fA~N~gi~f~ 153 (159)
T PF08645_consen 107 LKDYNDGVEIDLANSFYVGDAAGRSKKKKDFSDSDRKFALNCGIKFY 153 (159)
T ss_dssp CCCTSTT--S-CCC-EEEESSCHCTB-S--S--HHHHHHHHHT--EE
T ss_pred HHhccccccccccceEEEeccCCCCCcccccChhHHHHHHHcCCccc
Confidence 98876 488999999996 578999999999753
No 114
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=99.05 E-value=1.8e-09 Score=89.70 Aligned_cols=97 Identities=15% Similarity=0.113 Sum_probs=63.7
Q ss_pred EEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEe
Q 021360 112 LASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 191 (313)
Q Consensus 112 i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v 191 (313)
+.+......+...+ +..++...... ..-+-...+..+...++.++++++++++++++|||+.||++|++.+|+.+.+-
T Consensus 112 ~~~~~~~~~~~~~l-~~~~~~~~~~~-~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~iGDs~ND~~ml~~ag~~vam~ 189 (215)
T TIGR01487 112 MREGKDVDEVREII-KERGLNLVDSG-FAIHIMKKGVDKGVGVEKLKELLGIKPEEVAAIGDSENDIDLFRVVGFKVAVA 189 (215)
T ss_pred ecCCccHHHHHHHH-HhCCeEEEecC-ceEEEecCCCChHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHhCCCeEEcC
Confidence 34444445555555 44554322110 00111234556678999999999999999999999999999999999987666
Q ss_pred CCCCCccccccccceeeccccc
Q 021360 192 PSLPKQTHRYTAADEVINSLLD 213 (313)
Q Consensus 192 ~~~~~~~~~~~~s~~ii~~l~e 213 (313)
+. .+.....++.+..+..+
T Consensus 190 na---~~~~k~~A~~v~~~~~~ 208 (215)
T TIGR01487 190 NA---DDQLKEIADYVTSNPYG 208 (215)
T ss_pred Cc---cHHHHHhCCEEcCCCCC
Confidence 54 34444567777765443
No 115
>PTZ00445 p36-lilke protein; Provisional
Probab=99.02 E-value=4.8e-09 Score=84.04 Aligned_cols=102 Identities=15% Similarity=0.218 Sum_probs=81.9
Q ss_pred CCCchHHHHHHHHHHCCCCEEEEeCCchHH---------------HHHHHHhhcCCccccceEEecC-----------CC
Q 021360 91 KALPGANRLIKHLSCHGVPMALASNSHRAT---------------IESKISYQHGWNESFSVIVGSD-----------EV 144 (313)
Q Consensus 91 ~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~---------------~~~~l~~~~~~~~~f~~v~~~~-----------~~ 144 (313)
.+.|++..++.++++.|++++++|-+++.. ++..+ +.-+.....+.+++.. ..
T Consensus 75 ~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~l-k~s~~~~~i~~~~~yyp~~w~~p~~y~~~ 153 (219)
T PTZ00445 75 SVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAAL-KKSKCDFKIKKVYAYYPKFWQEPSDYRPL 153 (219)
T ss_pred cCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHH-HhcCccceeeeeeeeCCcccCChhhhhhh
Confidence 368899999999999999999999887744 44444 4334333334444432 12
Q ss_pred CCCCCChHH--H--HHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCC
Q 021360 145 RTGKPSPDI--F--LEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 145 ~~~kp~~~~--~--~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~ 193 (313)
+..||+|+. + ++++++.|+.|+++++|+|...++.+|+++|+.++.+..
T Consensus 154 gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~NVeaA~~lGi~ai~f~~ 206 (219)
T PTZ00445 154 GLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNNCKNALKEGYIALHVTG 206 (219)
T ss_pred cccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHHHHHHHHCCCEEEEcCC
Confidence 578999999 8 999999999999999999999999999999999999876
No 116
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.98 E-value=2.2e-09 Score=90.64 Aligned_cols=60 Identities=13% Similarity=0.169 Sum_probs=55.1
Q ss_pred chHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHH
Q 021360 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIF 154 (313)
Q Consensus 94 pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~ 154 (313)
|++.++|++|++.|++++++|++.++.+...+ +.+|+..+|+.++++++....+|+++..
T Consensus 149 PgV~EaL~~LkekGikLaIaTS~~Re~v~~~L-~~lGLd~YFdvIIs~Gdv~~~kp~~e~~ 208 (301)
T TIGR01684 149 PRIYDSLTELKKRGCILVLWSYGDRDHVVESM-RKVKLDRYFDIIISGGHKAEEYSTMSTE 208 (301)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHH-HHcCCCcccCEEEECCccccCCCCcccc
Confidence 78999999999999999999999999998888 8899999999999999998888887544
No 117
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=98.98 E-value=1.3e-09 Score=86.05 Aligned_cols=206 Identities=16% Similarity=0.185 Sum_probs=113.7
Q ss_pred ccCccEEEEecCCccccChHHHHHHHHHHHHHcC-CCCChhhhhhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHH--
Q 021360 6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYG-KEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSM-- 82 (313)
Q Consensus 6 ~~~~k~vifDlDGTL~d~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 82 (313)
.+.++.+++|+-|||.++...+..+ .++++++. -..--....+..+.+. ..+..-+.++|++.+.+++.......
T Consensus 4 ~~~v~gvLlDlSGtLh~e~~avpga-~eAl~rLr~~~~kVkFvTNttk~Sk-~~l~~rL~rlgf~v~eeei~tsl~aa~~ 81 (262)
T KOG3040|consen 4 GRAVKGVLLDLSGTLHIEDAAVPGA-VEALKRLRDQHVKVKFVTNTTKESK-RNLHERLQRLGFDVSEEEIFTSLPAARQ 81 (262)
T ss_pred ccccceEEEeccceEecccccCCCH-HHHHHHHHhcCceEEEEecCcchhH-HHHHHHHHHhCCCccHHHhcCccHHHHH
Confidence 3568899999999999886655443 23333332 1111111111112222 23344556778887777765433222
Q ss_pred -HHhhh--ccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHH-------HHhhc-------CCccccceEE------
Q 021360 83 -FSDHL--CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESK-------ISYQH-------GWNESFSVIV------ 139 (313)
Q Consensus 83 -~~~~~--~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~-------l~~~~-------~~~~~f~~v~------ 139 (313)
+.+.. ..+.+.+++.+-.+...-..-..+++...++.|--.. |.+.. +-..|++..-
T Consensus 82 ~~~~~~lrP~l~v~d~a~~dF~gidTs~pn~VViglape~F~y~~ln~AFrvL~e~~k~~LIai~kgryykr~~Gl~lgp 161 (262)
T KOG3040|consen 82 YLEENQLRPYLIVDDDALEDFDGIDTSDPNCVVIGLAPEGFSYQRLNRAFRVLLEMKKPLLIAIGKGRYYKRVDGLCLGP 161 (262)
T ss_pred HHHhcCCCceEEEcccchhhCCCccCCCCCeEEEecCcccccHHHHHHHHHHHHcCCCCeEEEecCceeeeeccccccCc
Confidence 22111 1222334555555444444334444444443332111 11110 1111221110
Q ss_pred -----------ecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecCHh-hHHHHHHcCCeEEEeCCCCCcc--c--cccc
Q 021360 140 -----------GSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVI-GVVAGKAAGMEVVAVPSLPKQT--H--RYTA 203 (313)
Q Consensus 140 -----------~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~-Di~~a~~~G~~~i~v~~~~~~~--~--~~~~ 203 (313)
.....-.+||++.+|+.++..+|++|++++||||..+ |+-.|+++||+.+.|.++.-.+ + ....
T Consensus 162 G~fv~aLeyatg~~a~vvGKP~~~fFe~al~~~gv~p~~aVMIGDD~~dDvgGAq~~GMrgilVkTGK~rpsDe~k~~~~ 241 (262)
T KOG3040|consen 162 GPFVAALEYATGCEATVVGKPSPFFFESALQALGVDPEEAVMIGDDLNDDVGGAQACGMRGILVKTGKFRPSDEEKPPVP 241 (262)
T ss_pred hHHHHHhhhccCceEEEecCCCHHHHHHHHHhcCCChHHheEEccccccchhhHhhhcceeEEeeccccCCcccccCCCC
Confidence 0011127899999999999999999999999999995 8999999999999999864333 1 1334
Q ss_pred cceeeccccc
Q 021360 204 ADEVINSLLD 213 (313)
Q Consensus 204 s~~ii~~l~e 213 (313)
++...+++.+
T Consensus 242 p~~~~d~f~~ 251 (262)
T KOG3040|consen 242 PDLTADNFAD 251 (262)
T ss_pred cchhhhhHHH
Confidence 5666666654
No 118
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.97 E-value=1.2e-08 Score=88.02 Aligned_cols=45 Identities=13% Similarity=0.028 Sum_probs=41.2
Q ss_pred CChHHHHHHHHHcCCCC-CcEEEEecCHhhHHHHHHcCCeEEEeCC
Q 021360 149 PSPDIFLEAAKRLNMEP-SSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 149 p~~~~~~~~~~~~~~~~-~~~i~vgD~~~Di~~a~~~G~~~i~v~~ 193 (313)
.+...++.+++.+++++ +++++|||+.||++|++.+|+.+++-+.
T Consensus 190 ~Kg~al~~l~~~~~i~~~~~v~~~GDs~NDi~m~~~ag~~vam~NA 235 (273)
T PRK00192 190 DKGKAVRWLKELYRRQDGVETIALGDSPNDLPMLEAADIAVVVPGP 235 (273)
T ss_pred CHHHHHHHHHHHHhccCCceEEEEcCChhhHHHHHhCCeeEEeCCC
Confidence 56678999999999999 9999999999999999999998887765
No 119
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=98.97 E-value=1.8e-08 Score=85.43 Aligned_cols=85 Identities=13% Similarity=0.213 Sum_probs=63.7
Q ss_pred ccCCCCchHHHHHHHHHHCCCCEEEEeCCchHH---HHHHHHhhcCCccc-cceEEecCCCCCCCCChHHHHHHHHHcCC
Q 021360 88 CKVKALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNES-FSVIVGSDEVRTGKPSPDIFLEAAKRLNM 163 (313)
Q Consensus 88 ~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~---~~~~l~~~~~~~~~-f~~v~~~~~~~~~kp~~~~~~~~~~~~~~ 163 (313)
....++||+.++++.+++.|++++++|+++... ....+ +.+|+... ++.++...+ .++++..++.+.+.+++
T Consensus 115 ~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~L-kk~Gi~~~~~d~lllr~~---~~~K~~rr~~I~~~y~I 190 (266)
T TIGR01533 115 AQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNL-KRFGFPQADEEHLLLKKD---KSSKESRRQKVQKDYEI 190 (266)
T ss_pred CCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHH-HHcCcCCCCcceEEeCCC---CCCcHHHHHHHHhcCCE
Confidence 356789999999999999999999999987443 33455 67888653 456666543 34556777776665555
Q ss_pred CCCcEEEEecCHhhHHH
Q 021360 164 EPSSSLVIEDSVIGVVA 180 (313)
Q Consensus 164 ~~~~~i~vgD~~~Di~~ 180 (313)
+++|||..+|+..
T Consensus 191 ----vl~vGD~~~Df~~ 203 (266)
T TIGR01533 191 ----VLLFGDNLLDFDD 203 (266)
T ss_pred ----EEEECCCHHHhhh
Confidence 8999999999965
No 120
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=98.94 E-value=5.4e-10 Score=84.26 Aligned_cols=84 Identities=19% Similarity=0.300 Sum_probs=71.1
Q ss_pred HHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHH
Q 021360 100 IKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVV 179 (313)
Q Consensus 100 l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~ 179 (313)
++.|.+.|++++++|+.....++... +.+|+ +.++-+ .+.+...+.++++++++++++|.++||..+|+.
T Consensus 44 ik~l~~~Gi~vAIITGr~s~ive~Ra-~~LGI----~~~~qG-----~~dK~~a~~~L~~~~~l~~e~~ayiGDD~~Dlp 113 (170)
T COG1778 44 IKLLLKSGIKVAIITGRDSPIVEKRA-KDLGI----KHLYQG-----ISDKLAAFEELLKKLNLDPEEVAYVGDDLVDLP 113 (170)
T ss_pred HHHHHHcCCeEEEEeCCCCHHHHHHH-HHcCC----ceeeec-----hHhHHHHHHHHHHHhCCCHHHhhhhcCccccHH
Confidence 55678889999999999999998888 88999 555544 233458899999999999999999999999999
Q ss_pred HHHHcCCeEEEeCC
Q 021360 180 AGKAAGMEVVAVPS 193 (313)
Q Consensus 180 ~a~~~G~~~i~v~~ 193 (313)
..+++|.++...+.
T Consensus 114 vm~~vGls~a~~dA 127 (170)
T COG1778 114 VMEKVGLSVAVADA 127 (170)
T ss_pred HHHHcCCccccccc
Confidence 99999998765544
No 121
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=98.93 E-value=2.3e-09 Score=91.99 Aligned_cols=65 Identities=20% Similarity=0.131 Sum_probs=50.5
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCccccccccceeeccccc
Q 021360 146 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD 213 (313)
Q Consensus 146 ~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~~l~e 213 (313)
.+..+...++.+++++|++++++++|||+.||++|.+.+|..+++-+. .+.....++.+..+-.+
T Consensus 186 ~g~~K~~al~~l~~~lgi~~~~v~afGD~~ND~~Ml~~ag~gvam~Na---~~~~k~~A~~vt~~n~~ 250 (264)
T COG0561 186 KGVSKGYALQRLAKLLGIKLEEVIAFGDSTNDIEMLEVAGLGVAMGNA---DEELKELADYVTTSNDE 250 (264)
T ss_pred CCCchHHHHHHHHHHhCCCHHHeEEeCCccccHHHHHhcCeeeeccCC---CHHHHhhCCcccCCccc
Confidence 566677899999999999999999999999999999999998777655 33333345545454433
No 122
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=98.90 E-value=2.8e-08 Score=77.89 Aligned_cols=92 Identities=24% Similarity=0.255 Sum_probs=64.1
Q ss_pred CCchHHHHHHHHHHCCC--CEEEEeCCc-------hHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcC
Q 021360 92 ALPGANRLIKHLSCHGV--PMALASNSH-------RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN 162 (313)
Q Consensus 92 ~~pgv~e~l~~l~~~g~--~~~i~s~~~-------~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~ 162 (313)
+.|.+.+.++++++.+. ++.++||+. ...++ .+++.+|+ ..+... ..|| ..++++++.++
T Consensus 60 i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~-~~~~~lgI----pvl~h~----~kKP--~~~~~i~~~~~ 128 (168)
T PF09419_consen 60 IPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAE-ALEKALGI----PVLRHR----AKKP--GCFREILKYFK 128 (168)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHH-HHHHhhCC----cEEEeC----CCCC--ccHHHHHHHHh
Confidence 44456677777877765 499999984 33344 33477776 433322 3555 44555555554
Q ss_pred -----CCCCcEEEEecCH-hhHHHHHHcCCeEEEeCCC
Q 021360 163 -----MEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSL 194 (313)
Q Consensus 163 -----~~~~~~i~vgD~~-~Di~~a~~~G~~~i~v~~~ 194 (313)
.+|+++++|||.. .|+-+|..+|+.++++..+
T Consensus 129 ~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~tilv~~g 166 (168)
T PF09419_consen 129 CQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTILVTDG 166 (168)
T ss_pred hccCCCCchhEEEEcchHHHHHHHhhccCceEEEEecC
Confidence 3599999999999 6999999999999998764
No 123
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=98.89 E-value=2.2e-09 Score=92.48 Aligned_cols=66 Identities=18% Similarity=0.114 Sum_probs=54.2
Q ss_pred CCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCccccccccceeeccccc
Q 021360 145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD 213 (313)
Q Consensus 145 ~~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~~l~e 213 (313)
..+-.+...++.+++.+|++++++++|||+.||++|.+.+|..+++-+. .+..+..++++..+..+
T Consensus 192 ~~gvsKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~NA---~~~vK~~A~~vt~~n~~ 257 (270)
T PRK10513 192 DKRVNKGTGVKSLAEHLGIKPEEVMAIGDQENDIAMIEYAGVGVAMGNA---IPSVKEVAQFVTKSNLE 257 (270)
T ss_pred CCCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhCCceEEecCc---cHHHHHhcCeeccCCCc
Confidence 3566677999999999999999999999999999999999998776654 44445568888776654
No 124
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=98.89 E-value=3.8e-08 Score=78.59 Aligned_cols=172 Identities=16% Similarity=0.106 Sum_probs=102.6
Q ss_pred CccEEEEecCCccccChHHHHHHHHHHHHHcCCCCChhhhhhhcCC-CHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHh
Q 021360 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGK-TPLEEAAIIVEDYGLP-CAKHEFVNEVYSMFSD 85 (313)
Q Consensus 8 ~~k~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 85 (313)
+.-+++||+|-|++|.+..- .+...++..-...+.+..... -+.+....+++.++-. ...++ ...
T Consensus 12 ~ril~~FDFD~TIid~dSD~-----wVv~~lp~~~l~~qL~~t~p~~~Wne~M~rv~k~Lheqgv~~~~--------ik~ 78 (256)
T KOG3120|consen 12 PRILLVFDFDRTIIDQDSDN-----WVVDELPTTDLFNQLRDTYPKGFWNELMDRVFKELHEQGVRIAE--------IKQ 78 (256)
T ss_pred CcEEEEEecCceeecCCcch-----HHHHhcccchhHHHHHHhcccchHHHHHHHHHHHHHHcCCCHHH--------HHH
Confidence 45678999999999764321 112222322221222111111 1233333444443311 11222 222
Q ss_pred hhccCCCCchHHHHHHHHHHCCC-CEEEEeCCchHHHHHHHHhhcCCccccceEEecCCC------------C-----CC
Q 021360 86 HLCKVKALPGANRLIKHLSCHGV-PMALASNSHRATIESKISYQHGWNESFSVIVGSDEV------------R-----TG 147 (313)
Q Consensus 86 ~~~~~~~~pgv~e~l~~l~~~g~-~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~------------~-----~~ 147 (313)
.+..++..||+.++++.+++.|. .+.++|.++..|++..| +.+++.+.|..|++-... . ..
T Consensus 79 ~~r~iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~L-ea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~~ 157 (256)
T KOG3120|consen 79 VLRSIPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEIL-EAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSCNL 157 (256)
T ss_pred HHhcCCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHH-HHccHHHHHHHHhcCCcccCCCCcEEeecCCCCCccCc
Confidence 33568999999999999999885 99999999999999999 889999888776653210 0 01
Q ss_pred CC----ChHHHHHH---HHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCC
Q 021360 148 KP----SPDIFLEA---AKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 148 kp----~~~~~~~~---~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~ 193 (313)
-| +...+.++ ..+-|+..++++|+||+.||+..-....-.-++.++
T Consensus 158 CPsNmCKg~Vl~~~~~s~~~~gv~yer~iYvGDG~nD~CP~l~Lr~~D~ampR 210 (256)
T KOG3120|consen 158 CPSNMCKGLVLDELVASQLKDGVRYERLIYVGDGANDFCPVLRLRACDVAMPR 210 (256)
T ss_pred CchhhhhhHHHHHHHHHHhhcCCceeeEEEEcCCCCCcCcchhcccCceeccc
Confidence 11 12223222 234578889999999999999876555444334443
No 125
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=98.88 E-value=2.3e-08 Score=86.22 Aligned_cols=65 Identities=9% Similarity=0.063 Sum_probs=50.5
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCccccccccce--eeccccc
Q 021360 146 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADE--VINSLLD 213 (313)
Q Consensus 146 ~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~--ii~~l~e 213 (313)
.+-.+...++.+++.+|++++++++|||+.||++|.+.+|..+++-+. .+..+..++. ++.+..+
T Consensus 185 ~g~sKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~Na---~~~vK~~A~~~~v~~~n~e 251 (272)
T PRK15126 185 VGCNKGAALAVLSQHLGLSLADCMAFGDAMNDREMLGSVGRGFIMGNA---MPQLRAELPHLPVIGHCRN 251 (272)
T ss_pred CCCChHHHHHHHHHHhCCCHHHeEEecCCHHHHHHHHHcCCceeccCC---hHHHHHhCCCCeecCCCcc
Confidence 555677999999999999999999999999999999999997766554 3344444553 5555544
No 126
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=98.87 E-value=1.3e-08 Score=85.43 Aligned_cols=70 Identities=27% Similarity=0.369 Sum_probs=57.2
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEeCCCCCcc--------ccccccceeeccccccC
Q 021360 146 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQT--------HRYTAADEVINSLLDLR 215 (313)
Q Consensus 146 ~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~-~Di~~a~~~G~~~i~v~~~~~~~--------~~~~~s~~ii~~l~e~~ 215 (313)
.+||++.++..++++++++|++++||||+. .||..++.+|++++++-++.... .....+++.++++.++.
T Consensus 222 ~GKP~~~m~~~l~~~~~i~psRt~mvGDRL~TDIlFG~~~G~~TLLvltGv~~led~~~~~~~~~~~PDyy~~~l~d~~ 300 (306)
T KOG2882|consen 222 LGKPSTFMFEYLLEKFNIDPSRTCMVGDRLDTDILFGKNCGFKTLLVLSGVTTLEDILEAQGDNKMVPDYYADSLGDLL 300 (306)
T ss_pred cCCCCHHHHHHHHHHcCCCcceEEEEcccchhhhhHhhccCcceEEEecCcCcHHHHHhcccccCCCCchHHhhHHHHh
Confidence 789999999999999999999999999999 59999999999999998864421 11234667777665543
No 127
>PRK10976 putative hydrolase; Provisional
Probab=98.87 E-value=1.8e-08 Score=86.59 Aligned_cols=65 Identities=18% Similarity=0.140 Sum_probs=51.3
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCccccccccc--eeeccccc
Q 021360 146 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAAD--EVINSLLD 213 (313)
Q Consensus 146 ~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~--~ii~~l~e 213 (313)
.+-.+...++.+++.+|++++++++|||+.||++|.+.+|..+++-+. .+..+..++ .++.+..+
T Consensus 187 ~gvsKg~al~~l~~~lgi~~~~viafGD~~NDi~Ml~~ag~~vAm~NA---~~~vK~~A~~~~v~~~n~e 253 (266)
T PRK10976 187 GGVSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIMGNA---HQRLKDLLPELEVIGSNAD 253 (266)
T ss_pred CCCChHHHHHHHHHHcCCCHHHeEEEcCCcccHHHHHHcCCCeeecCC---cHHHHHhCCCCeecccCch
Confidence 555667999999999999999999999999999999999998776655 334444554 56665544
No 128
>PLN02887 hydrolase family protein
Probab=98.80 E-value=5.9e-08 Score=91.08 Aligned_cols=66 Identities=15% Similarity=0.088 Sum_probs=54.1
Q ss_pred CCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCccccccccceeeccccc
Q 021360 145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD 213 (313)
Q Consensus 145 ~~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~~l~e 213 (313)
..+-.+...++.+++.+|++++++++|||+.||++|.+.+|..+++-+. .+..+..++.+..+..+
T Consensus 503 p~gvSKG~ALk~L~e~lGI~~eeviAFGDs~NDIeMLe~AG~gVAMgNA---~eeVK~~Ad~VT~sNdE 568 (580)
T PLN02887 503 PPGTSKGNGVKMLLNHLGVSPDEIMAIGDGENDIEMLQLASLGVALSNG---AEKTKAVADVIGVSNDE 568 (580)
T ss_pred cCCCCHHHHHHHHHHHcCCCHHHEEEEecchhhHHHHHHCCCEEEeCCC---CHHHHHhCCEEeCCCCc
Confidence 3556677899999999999999999999999999999999998776654 44455568888876654
No 129
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=98.78 E-value=1.4e-07 Score=78.70 Aligned_cols=44 Identities=14% Similarity=-0.022 Sum_probs=38.6
Q ss_pred CCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEE
Q 021360 147 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVA 190 (313)
Q Consensus 147 ~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~ 190 (313)
+-.++..++.+++.+|++++++++|||+.||+.|.+.+|..+++
T Consensus 177 ~~~Kg~al~~l~~~lgi~~~~vi~~GD~~NDi~ml~~ag~~va~ 220 (221)
T TIGR02463 177 SSSKGKAANWLKATYNQPDVKTLGLGDGPNDLPLLEVADYAVVI 220 (221)
T ss_pred CCCHHHHHHHHHHHhCCCCCcEEEECCCHHHHHHHHhCCceEEe
Confidence 33456788999999999999999999999999999999997653
No 130
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=3.3e-07 Score=71.19 Aligned_cols=117 Identities=17% Similarity=0.165 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCcc
Q 021360 54 TPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE 133 (313)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~ 133 (313)
+.++.+.+++...+.+. ++. .......+.+.||.+++++.+++.+++++++|++-..++..++ +...-.+
T Consensus 45 S~rd~~g~mf~~i~~s~--~Ei-------le~llk~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lf-e~ivgke 114 (220)
T COG4359 45 SFRDGFGRMFGSIHSSL--EEI-------LEFLLKDIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLF-EGIVGKE 114 (220)
T ss_pred eHHHHHHHHHHhcCCCH--HHH-------HHHHHhhcccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHH-Hhhcccc
Confidence 34455556666555442 222 1222245789999999999999999999999999999999888 4443211
Q ss_pred ccceE-Ee----------------cC--CCCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCC
Q 021360 134 SFSVI-VG----------------SD--EVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGM 186 (313)
Q Consensus 134 ~f~~v-~~----------------~~--~~~~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~ 186 (313)
..+.+ ++ .+ .++..|| . .+..+.-+++.++|.||+..|+++|+....
T Consensus 115 ~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~dK~--~----vI~~l~e~~e~~fy~GDsvsDlsaaklsDl 180 (220)
T COG4359 115 RIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGHDKS--S----VIHELSEPNESIFYCGDSVSDLSAAKLSDL 180 (220)
T ss_pred ceeeeEEeecCceEcCCCceeeecCCccccCCCcc--h----hHHHhhcCCceEEEecCCcccccHhhhhhh
Confidence 11111 11 11 1223333 2 334445567789999999999999988775
No 131
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.73 E-value=2.5e-08 Score=85.95 Aligned_cols=49 Identities=8% Similarity=-0.096 Sum_probs=43.2
Q ss_pred CCCCCChHHHHHHHHHcCC---CCCcEEEEecCHhhHHHHHHcCCeEEEeCC
Q 021360 145 RTGKPSPDIFLEAAKRLNM---EPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 145 ~~~kp~~~~~~~~~~~~~~---~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~ 193 (313)
..+-.+...++.+++.+|+ ++++++.|||+.||++|.+.+|..+++-+.
T Consensus 183 ~~g~sKg~al~~l~~~lgi~~~~~~~viafGDs~NDi~Ml~~ag~gvAM~~~ 234 (271)
T PRK03669 183 DASAGKDQAANWLIATYQQLSGTRPTTLGLGDGPNDAPLLDVMDYAVVVKGL 234 (271)
T ss_pred cCCCCHHHHHHHHHHHHHhhcCCCceEEEEcCCHHHHHHHHhCCEEEEecCC
Confidence 3556677899999999999 999999999999999999999998777643
No 132
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=98.73 E-value=6.6e-08 Score=81.57 Aligned_cols=49 Identities=14% Similarity=-0.041 Sum_probs=43.3
Q ss_pred CCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeC
Q 021360 144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVP 192 (313)
Q Consensus 144 ~~~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~ 192 (313)
...+.+++..++.+++++|++++++++|||+.||+.|++.+|..+.+-+
T Consensus 154 ~~~~~~K~~al~~l~~~~g~~~~~~i~~GD~~nD~~ml~~~~~~iav~n 202 (236)
T TIGR02471 154 LPLRASKGLALRYLSYRWGLPLEQILVAGDSGNDEEMLRGLTLGVVVGN 202 (236)
T ss_pred eeCCCChHHHHHHHHHHhCCCHHHEEEEcCCccHHHHHcCCCcEEEEcC
Confidence 3467788899999999999999999999999999999999998775543
No 133
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=98.72 E-value=3.4e-08 Score=84.35 Aligned_cols=65 Identities=18% Similarity=0.154 Sum_probs=51.7
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCccccccccceeeccccc
Q 021360 146 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD 213 (313)
Q Consensus 146 ~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~~l~e 213 (313)
.+-.+...++.+++.++++++++++|||+.||+.|++.+|+.+++.+. .+.....++.+..+..+
T Consensus 185 ~~~~K~~~i~~~~~~~~~~~~~~~~~GD~~nD~~m~~~~~~~~a~~na---~~~~k~~a~~~~~~n~~ 249 (256)
T TIGR00099 185 KGVSKGSALQSLAEALGISLEDVIAFGDGMNDIEMLEAAGYGVAMGNA---DEELKALADYVTDSNNE 249 (256)
T ss_pred CCCChHHHHHHHHHHcCCCHHHEEEeCCcHHhHHHHHhCCceeEecCc---hHHHHHhCCEEecCCCC
Confidence 555677999999999999999999999999999999999998766533 33334457777766544
No 134
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=98.68 E-value=4.4e-08 Score=78.87 Aligned_cols=113 Identities=20% Similarity=0.254 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHCCCCEEEEe--------CCchHHHHHHHHhhcCCccccceEEecCCCCC---CCCChHHHHHHHHHcCC
Q 021360 95 GANRLIKHLSCHGVPMALAS--------NSHRATIESKISYQHGWNESFSVIVGSDEVRT---GKPSPDIFLEAAKRLNM 163 (313)
Q Consensus 95 gv~e~l~~l~~~g~~~~i~s--------~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~---~kp~~~~~~~~~~~~~~ 163 (313)
...+-++.+++.|+..+++- .++.++++..+ ...+. +.+++|+|+.. +.++.+.+++.++++|+
T Consensus 57 ~~e~R~~~l~~l~vd~v~~~~f~~~~~~~s~~~Fi~~il-~~~~~----~~ivvG~Df~FG~~~~g~~~~L~~~~~~~g~ 131 (180)
T cd02064 57 TLEEKLELLESLGVDYLLVLPFDKEFASLSAEEFVEDLL-VKLNA----KHVVVGFDFRFGKGRSGDAELLKELGKKYGF 131 (180)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCHHHHcCCHHHHHHHHH-hhcCC----eEEEEccCCCCCCCCCCCHHHHHHhhhhcCc
Confidence 34556667777777666542 24566666555 33355 88888888863 45677778777777777
Q ss_pred CCCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCccccccccceeeccccccCccccCCCCccccccCCCCCCccccccce
Q 021360 164 EPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIGGPV 243 (313)
Q Consensus 164 ~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~~l~e~~~~~~~~~~~~~~~a~~~lg~p~~~~g~v 243 (313)
. ++.++.. ..+....+|+.+++.+.+++++. |+.+||+||.++|+|
T Consensus 132 ~-----------------------v~~v~~~-~~~~~~iSST~IR~~i~~G~i~~----------an~lLg~~y~~~g~V 177 (180)
T cd02064 132 E-----------------------VTVVPPV-TLDGERVSSTRIREALAEGDVEL----------ANELLGRPYSIEGRV 177 (180)
T ss_pred E-----------------------EEEeCcE-ecCCcEEcHHHHHHHHHhCCHHH----------HHHHcCCCcEEEEEE
Confidence 6 5566553 22333458889999999999999 999999999999999
Q ss_pred eee
Q 021360 244 VKG 246 (313)
Q Consensus 244 ~~g 246 (313)
+||
T Consensus 178 ~~G 180 (180)
T cd02064 178 VHG 180 (180)
T ss_pred eeC
Confidence 997
No 135
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=98.68 E-value=1.4e-08 Score=80.24 Aligned_cols=100 Identities=8% Similarity=0.055 Sum_probs=85.2
Q ss_pred cCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCcc-ccceEEecCCCCCCCCChHHHHHHHHHcCCCCCc
Q 021360 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE-SFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (313)
Q Consensus 89 ~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~-~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 167 (313)
.+..+||+.++|+.+.+. +.+++.|++.+.+++..+ +.++... .|+.+++.+++...+|+ +.+.+..+|.++++
T Consensus 40 ~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il-~~ldp~~~~f~~~l~r~~~~~~~~~---~~K~L~~l~~~~~~ 114 (162)
T TIGR02251 40 YVFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVL-DILDRGGKVISRRLYRESCVFTNGK---YVKDLSLVGKDLSK 114 (162)
T ss_pred EEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHH-HHHCcCCCEEeEEEEccccEEeCCC---EEeEchhcCCChhh
Confidence 457889999999999988 999999999999999888 7788765 78888888887666665 56667788999999
Q ss_pred EEEEecCHhhHHHHHHcCCeEEEeCC
Q 021360 168 SLVIEDSVIGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 168 ~i~vgD~~~Di~~a~~~G~~~i~v~~ 193 (313)
+++|||++.++.++...|+.+.....
T Consensus 115 vIiVDD~~~~~~~~~~NgI~i~~f~~ 140 (162)
T TIGR02251 115 VIIIDNSPYSYSLQPDNAIPIKSWFG 140 (162)
T ss_pred EEEEeCChhhhccCccCEeecCCCCC
Confidence 99999999999999999987655543
No 136
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=98.63 E-value=1e-07 Score=77.64 Aligned_cols=167 Identities=16% Similarity=0.282 Sum_probs=87.8
Q ss_pred cE-EEEecCCccccChHHHHHHHHHHHHHcCCC--CChhhhhhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH--
Q 021360 10 SC-VILDLDGTLLNTDGMFSEVLKTFLVKYGKE--WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFS-- 84 (313)
Q Consensus 10 k~-vifDlDGTL~d~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 84 (313)
++ |++|+||||.|....+.+.+. +.++.. ++.+....+ .. .+.++.. .++....+.+.+.
T Consensus 2 ~i~I~iDiDgVLad~~~~~~~~~n---~~~~~~~~~~~~~~~~~---~~-------~~~~g~~--~~e~~~~~~~~~~~~ 66 (191)
T PF06941_consen 2 KIRIAIDIDGVLADFNSAFIEWFN---EEFGKNPELTPEDITGY---WD-------WEKWGIT--EPEFYEKLWRFYEEP 66 (191)
T ss_dssp -EEEEEESBTTTB-HHHHHHHHHH---HHTTTS----GGGGTSS---SH-------HHHHHHH--STTHHHHHHHHHTST
T ss_pred CcEEEEECCCCCcccHHHHHHHHH---HHcCCCCCCCHHHhhhh---hH-------HHHhCCC--CHHHHHHHHHHHhCh
Confidence 35 899999999998765544433 345555 444433210 10 1111100 0122233333332
Q ss_pred hhhccCCCCchHHHHHHHHHHCCCCEEEEeCCchH-------HHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHH
Q 021360 85 DHLCKVKALPGANRLIKHLSCHGVPMALASNSHRA-------TIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEA 157 (313)
Q Consensus 85 ~~~~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~-------~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~ 157 (313)
..+..+++.||+.+.|+.|.+.|+.++++|..+.. .....+.++++...+-+.+++++ |.
T Consensus 67 ~~f~~l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~~~~~~~-----K~-------- 133 (191)
T PF06941_consen 67 GFFSNLPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDNLIFTGD-----KT-------- 133 (191)
T ss_dssp TTTTT--B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCCEEEESS-----GG--------
T ss_pred hhhcCCCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchheEEEecC-----CC--------
Confidence 23567899999999999999999777777766543 22334545555433324455432 21
Q ss_pred HHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCccccccccceeeccccc
Q 021360 158 AKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD 213 (313)
Q Consensus 158 ~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~~l~e 213 (313)
.++.+ ++|+|++..+..+...|+++++++........ .-.++.+..|
T Consensus 134 --~v~~D----vlIDD~~~n~~~~~~~g~~~iLfd~p~Nr~~~---~~~Rv~~W~e 180 (191)
T PF06941_consen 134 --LVGGD----VLIDDRPHNLEQFANAGIPVILFDQPYNRDES---NFPRVNNWEE 180 (191)
T ss_dssp --GC--S----EEEESSSHHHSS-SSESSEEEEE--GGGTT-----TSEEE-STTS
T ss_pred --eEecc----EEecCChHHHHhccCCCceEEEEcCCCCCCCC---CCccCCCHHH
Confidence 12222 89999999999999999999999885433222 3444555544
No 137
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=98.61 E-value=5.3e-07 Score=76.70 Aligned_cols=50 Identities=24% Similarity=0.240 Sum_probs=42.3
Q ss_pred CCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCC
Q 021360 144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 144 ~~~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~ 193 (313)
...+.++...++.+++.+|+++++|++|||+.||+.|++.++...+.+..
T Consensus 162 ~~~~~~K~~al~~l~~~~~i~~~~~i~~GD~~ND~~ml~~~~~~~va~~n 211 (249)
T TIGR01485 162 LPQGSGKGQALQYLLQKLAMEPSQTLVCGDSGNDIELFEIGSVRGVIVSN 211 (249)
T ss_pred EeCCCChHHHHHHHHHHcCCCccCEEEEECChhHHHHHHccCCcEEEECC
Confidence 34678888999999999999999999999999999999996554455544
No 138
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.59 E-value=2e-07 Score=79.03 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=46.3
Q ss_pred chHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCC
Q 021360 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR 145 (313)
Q Consensus 94 pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~ 145 (313)
|++.++|++|++.|++++++|+++++.+...+ +.+|+..+|+.++++++..
T Consensus 151 p~V~EtL~eLkekGikLaIvTNg~Re~v~~~L-e~lgL~~yFDvII~~g~i~ 201 (303)
T PHA03398 151 PFVYDSLDELKERGCVLVLWSYGNREHVVHSL-KETKLEGYFDIIICGGRKA 201 (303)
T ss_pred hhHHHHHHHHHHCCCEEEEEcCCChHHHHHHH-HHcCCCccccEEEECCCcc
Confidence 68899999999999999999999999998888 8899999999998887654
No 139
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=98.57 E-value=2.7e-07 Score=87.45 Aligned_cols=105 Identities=19% Similarity=0.188 Sum_probs=77.0
Q ss_pred CCCCchHHHHHHHHHHCC-CCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcE
Q 021360 90 VKALPGANRLIKHLSCHG-VPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 168 (313)
Q Consensus 90 ~~~~pgv~e~l~~l~~~g-~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 168 (313)
.+++||+.++++.|++.| ++++++|+.+...++..+ +++|+..+|..+ .++++++ .+++++..+++|
T Consensus 383 d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~-~~lgi~~~f~~~-------~p~~K~~----~v~~l~~~~~~v 450 (556)
T TIGR01525 383 DQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVA-AELGIDEVHAEL-------LPEDKLA----IVKELQEEGGVV 450 (556)
T ss_pred ccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHH-HHhCCCeeeccC-------CHHHHHH----HHHHHHHcCCEE
Confidence 578999999999999999 999999999999988888 889996555432 1122233 444444467799
Q ss_pred EEEecCHhhHHHHHHcCCeEEEeCCCCCccccccccceeec
Q 021360 169 LVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVIN 209 (313)
Q Consensus 169 i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~ 209 (313)
+|+||+.+|+.+++++|+.+.+- ...+.....++.++.
T Consensus 451 ~~vGDg~nD~~al~~A~vgia~g---~~~~~~~~~Ad~vi~ 488 (556)
T TIGR01525 451 AMVGDGINDAPALAAADVGIAMG---AGSDVAIEAADIVLL 488 (556)
T ss_pred EEEECChhHHHHHhhCCEeEEeC---CCCHHHHHhCCEEEe
Confidence 99999999999999999654443 212222335666666
No 140
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=98.57 E-value=7.9e-07 Score=75.33 Aligned_cols=65 Identities=20% Similarity=0.136 Sum_probs=51.5
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCccccccccceeeccccc
Q 021360 146 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD 213 (313)
Q Consensus 146 ~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~~l~e 213 (313)
.+-.+...++.+++.+|++++++++|||+.||++|.+.+|..+++-+. .+.....++.+..+-.+
T Consensus 183 ~~vsK~~ai~~l~~~~~i~~~~~~~~GD~~ND~~Ml~~~~~~~am~na---~~~~k~~a~~i~~~~~~ 247 (254)
T PF08282_consen 183 KGVSKGSAIKYLLEYLGISPEDIIAFGDSENDIEMLELAGYSVAMGNA---TPELKKAADYITPSNND 247 (254)
T ss_dssp TTSSHHHHHHHHHHHHTTSGGGEEEEESSGGGHHHHHHSSEEEEETTS----HHHHHHSSEEESSGTC
T ss_pred CCCCHHHHHHHHhhhcccccceeEEeecccccHhHHhhcCeEEEEcCC---CHHHHHhCCEEecCCCC
Confidence 445567899999999999999999999999999999999998766544 34444567777766554
No 141
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=98.54 E-value=1.9e-07 Score=79.10 Aligned_cols=91 Identities=20% Similarity=0.300 Sum_probs=75.4
Q ss_pred CCCCchHHHHHHHHHHCCCCEEEEeCCchHHHH--HHHHhhcCCcc-ccceEEecCCCCCCCCChHHHHHHHHHcCCCCC
Q 021360 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIE--SKISYQHGWNE-SFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS 166 (313)
Q Consensus 90 ~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~--~~l~~~~~~~~-~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~ 166 (313)
..++||+.++|++|++.|++++++||+++.... ..+ +++|+.. +|+.++++.+... +.+..++++++.+++
T Consensus 23 ~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L-~~~gl~~~~~~~Ii~s~~~~~-----~~l~~~~~~~~~~~~ 96 (242)
T TIGR01459 23 NHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTL-KSLGINADLPEMIISSGEIAV-----QMILESKKRFDIRNG 96 (242)
T ss_pred CccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHH-HHCCCCccccceEEccHHHHH-----HHHHhhhhhccCCCc
Confidence 467999999999999999999999999876654 566 8899987 8999998875432 466677778888999
Q ss_pred cEEEEecCHhhHHHHHHcCC
Q 021360 167 SSLVIEDSVIGVVAGKAAGM 186 (313)
Q Consensus 167 ~~i~vgD~~~Di~~a~~~G~ 186 (313)
+++++||+..|+.....++.
T Consensus 97 ~~~~vGd~~~d~~~~~~~~~ 116 (242)
T TIGR01459 97 IIYLLGHLENDIINLMQCYT 116 (242)
T ss_pred eEEEeCCcccchhhhcCCCc
Confidence 99999999999887766554
No 142
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=98.50 E-value=4.4e-07 Score=85.55 Aligned_cols=112 Identities=21% Similarity=0.250 Sum_probs=80.7
Q ss_pred cCCCCchHHHHHHHHHHCCC-CEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCc
Q 021360 89 KVKALPGANRLIKHLSCHGV-PMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (313)
Q Consensus 89 ~~~~~pgv~e~l~~l~~~g~-~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 167 (313)
..+++|++.+.++.|++.|+ +++++|+.+...++..+ +++|+..+|..+. +.++ ..++++++.+.++
T Consensus 360 ~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~-~~lgi~~~f~~~~-------p~~K----~~~i~~l~~~~~~ 427 (536)
T TIGR01512 360 SDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVA-RELGIDEVHAELL-------PEDK----LEIVKELREKYGP 427 (536)
T ss_pred eccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHH-HHcCChhhhhccC-------cHHH----HHHHHHHHhcCCE
Confidence 35789999999999999999 99999999999998888 8899966554221 2222 3344555556689
Q ss_pred EEEEecCHhhHHHHHHcCCeEEEeCCCCCccccccccceee--cccccc
Q 021360 168 SLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI--NSLLDL 214 (313)
Q Consensus 168 ~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii--~~l~e~ 214 (313)
++|+||+.||+.+++.+|+.+.+-.. ..+.....++.++ +++.++
T Consensus 428 v~~vGDg~nD~~al~~A~vgia~g~~--~~~~~~~~ad~vl~~~~l~~l 474 (536)
T TIGR01512 428 VAMVGDGINDAPALAAADVGIAMGAS--GSDVAIETADVVLLNDDLSRL 474 (536)
T ss_pred EEEEeCCHHHHHHHHhCCEEEEeCCC--ccHHHHHhCCEEEECCCHHHH
Confidence 99999999999999999974443211 1222233567666 555554
No 143
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=98.45 E-value=3.8e-07 Score=76.19 Aligned_cols=44 Identities=9% Similarity=0.037 Sum_probs=35.8
Q ss_pred CCCChHHHHHHHHHcCC--CCCcEEEEecCHhhHHHHHHcCCeEEE
Q 021360 147 GKPSPDIFLEAAKRLNM--EPSSSLVIEDSVIGVVAGKAAGMEVVA 190 (313)
Q Consensus 147 ~kp~~~~~~~~~~~~~~--~~~~~i~vgD~~~Di~~a~~~G~~~i~ 190 (313)
+-.++..++.+++.+++ +++++++|||+.||+.|.+.+|+.+++
T Consensus 179 ~~sK~~al~~l~~~~~~~~~~~~~i~~GD~~nD~~ml~~ag~~v~v 224 (225)
T TIGR02461 179 GSDKGKAIKRLLDLYKLRPGAIESVGLGDSENDFPMFEVVDLAFLV 224 (225)
T ss_pred CCCHHHHHHHHHHHhccccCcccEEEEcCCHHHHHHHHhCCCcEec
Confidence 44456777888887765 677999999999999999999997653
No 144
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=98.43 E-value=2e-05 Score=63.68 Aligned_cols=105 Identities=15% Similarity=0.097 Sum_probs=78.3
Q ss_pred CCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCC-CCCCChHHHHHHHHHcCCCCCcE
Q 021360 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR-TGKPSPDIFLEAAKRLNMEPSSS 168 (313)
Q Consensus 90 ~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~-~~kp~~~~~~~~~~~~~~~~~~~ 168 (313)
...++++...++..+..|+++++.|.++....+.+. .+-+-.+.-..+-+.+|.. ..|-....+..+.+..|.++.++
T Consensus 122 ~~v~aDv~~a~e~w~~~g~~vyIYSSgsv~AqKllf-g~s~~gdl~~y~~gyfDt~iG~K~e~~sy~~I~~~Ig~s~~ei 200 (254)
T KOG2630|consen 122 AHVYADVLPAIERWSGEGVRVYIYSSGSVAAQKLLF-GYSDAGDLRKYISGYFDTTIGLKVESQSYKKIGHLIGKSPREI 200 (254)
T ss_pred ccccchhHHHHHHHhhcCceEEEEcCCcHHHHHHHH-cccCcchHHHHhhhhhhccccceehhHHHHHHHHHhCCChhhe
Confidence 478999999999999999999999988877655433 2222111111222222222 35666788999999999999999
Q ss_pred EEEecCHhhHHHHHHcCCeEEEeCCCC
Q 021360 169 LVIEDSVIGVVAGKAAGMEVVAVPSLP 195 (313)
Q Consensus 169 i~vgD~~~Di~~a~~~G~~~i~v~~~~ 195 (313)
++.-|.+....+|+.+|+.+..+.++.
T Consensus 201 LfLTd~~~Ea~aa~~aGl~a~l~~rPg 227 (254)
T KOG2630|consen 201 LFLTDVPREAAAARKAGLQAGLVSRPG 227 (254)
T ss_pred EEeccChHHHHHHHhcccceeeeecCC
Confidence 999999999999999999988877643
No 145
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=98.37 E-value=3.5e-06 Score=60.88 Aligned_cols=84 Identities=19% Similarity=0.172 Sum_probs=54.4
Q ss_pred CCCchHHHHHHHHHHCCCCEEEEeCCchH---HHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCc
Q 021360 91 KALPGANRLIKHLSCHGVPMALASNSHRA---TIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (313)
Q Consensus 91 ~~~pgv~e~l~~l~~~g~~~~i~s~~~~~---~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 167 (313)
.++||+.++++.|++.|.++.++||++.. .....| +.+|+....+.++++. ......+++. ....+
T Consensus 14 ~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L-~~~Gi~~~~~~i~ts~---------~~~~~~l~~~-~~~~~ 82 (101)
T PF13344_consen 14 EPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL-KKLGIPVDEDEIITSG---------MAAAEYLKEH-KGGKK 82 (101)
T ss_dssp EE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH-HHTTTT--GGGEEEHH---------HHHHHHHHHH-TTSSE
T ss_pred CcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH-HhcCcCCCcCEEEChH---------HHHHHHHHhc-CCCCE
Confidence 46789999999999999999999998643 334455 6788865556666653 3444455543 45677
Q ss_pred EEEEecCHhhHHHHHHcCC
Q 021360 168 SLVIEDSVIGVVAGKAAGM 186 (313)
Q Consensus 168 ~i~vgD~~~Di~~a~~~G~ 186 (313)
++++|-. ...+..+.+|+
T Consensus 83 v~vlG~~-~l~~~l~~~G~ 100 (101)
T PF13344_consen 83 VYVLGSD-GLREELREAGF 100 (101)
T ss_dssp EEEES-H-HHHHHHHHTTE
T ss_pred EEEEcCH-HHHHHHHHcCC
Confidence 8887755 55555666664
No 146
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=98.37 E-value=8.6e-06 Score=67.30 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=63.1
Q ss_pred ccCCCCchHHHHHHHHHHCCCCEEEEeCCchHH---HHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCC
Q 021360 88 CKVKALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME 164 (313)
Q Consensus 88 ~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~---~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~ 164 (313)
...+..|++.++++.+++.|+.++++|+.+... ....| ...|+..+ +.++....-...+..........+++--+
T Consensus 117 ~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL-~~~G~~~~-~~LiLR~~~d~~~~~~~yKs~~R~~l~~~ 194 (229)
T TIGR01675 117 GAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNL-INAGFTGW-KHLILRGLEDSNKTVVTYKSEVRKSLMEE 194 (229)
T ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHH-HHcCCCCc-CeeeecCCCCCCchHhHHHHHHHHHHHhC
Confidence 456899999999999999999999999998765 44455 56676543 55555432122332211111111121112
Q ss_pred CCc-EEEEecCHhhHHHHHHcCCeEEEeCC
Q 021360 165 PSS-SLVIEDSVIGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 165 ~~~-~i~vgD~~~Di~~a~~~G~~~i~v~~ 193 (313)
.-+ +..|||..+|+.. ..+|.++...+.
T Consensus 195 GYrIv~~iGDq~sDl~G-~~~~~RtFKLPN 223 (229)
T TIGR01675 195 GYRIWGNIGDQWSDLLG-SPPGRRTFKLPN 223 (229)
T ss_pred CceEEEEECCChHHhcC-CCccCceeeCCC
Confidence 223 4568999999965 355656655544
No 147
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=98.37 E-value=6.4e-07 Score=76.50 Aligned_cols=48 Identities=13% Similarity=0.014 Sum_probs=42.6
Q ss_pred CCCCChHHHHHHHHHcCCC--CCcEEEEecCHhhHHHHHHcCCeEEEeCC
Q 021360 146 TGKPSPDIFLEAAKRLNME--PSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 146 ~~kp~~~~~~~~~~~~~~~--~~~~i~vgD~~~Di~~a~~~G~~~i~v~~ 193 (313)
.+..+...++.+++.++++ .+++++|||+.||+.|.+.+|..+++-+.
T Consensus 173 ~~~~Kg~ai~~l~~~~~i~~~~~~~~a~GD~~ND~~Ml~~ag~~vam~Na 222 (256)
T TIGR01486 173 AGSDKGKAANALKQFYNQPGGAIKVVGLGDSPNDLPLLEVVDLAVVVPGP 222 (256)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCceEEEEcCCHhhHHHHHHCCEEEEeCCC
Confidence 4556678899999999999 99999999999999999999998877665
No 148
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=98.36 E-value=8.1e-07 Score=69.53 Aligned_cols=86 Identities=17% Similarity=0.096 Sum_probs=64.3
Q ss_pred ccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCc-ccc-ceEEecCCCCCCCCChHHHHHHHHHcCCCC
Q 021360 88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN-ESF-SVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 165 (313)
Q Consensus 88 ~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~-~~f-~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~ 165 (313)
....++||+.++|+.+++. +.++++|++.+.++...+ +.++.. .+| +.+++.+++.. +. .+.+-..++.+.
T Consensus 55 ~~v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl-~~ldp~~~~F~~ri~~rd~~~~--~~---~KdL~~i~~~d~ 127 (156)
T TIGR02250 55 YLTKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIA-KLIDPDGKYFGDRIISRDESGS--PH---TKSLLRLFPADE 127 (156)
T ss_pred EEEEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHH-HHhCcCCCeeccEEEEeccCCC--Cc---cccHHHHcCCCc
Confidence 3567899999999999966 999999999999999888 888877 478 66777766541 11 111213357788
Q ss_pred CcEEEEecCHhhHHH
Q 021360 166 SSSLVIEDSVIGVVA 180 (313)
Q Consensus 166 ~~~i~vgD~~~Di~~ 180 (313)
+.+++|+|++.-...
T Consensus 128 ~~vvivDd~~~~~~~ 142 (156)
T TIGR02250 128 SMVVIIDDREDVWPW 142 (156)
T ss_pred ccEEEEeCCHHHhhc
Confidence 999999999854333
No 149
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=98.34 E-value=2.3e-06 Score=70.39 Aligned_cols=45 Identities=22% Similarity=0.145 Sum_probs=41.3
Q ss_pred CCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEE
Q 021360 145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVV 189 (313)
Q Consensus 145 ~~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i 189 (313)
..+.+++..++.+++++++++++++++||+.+|+.+++.+|+.++
T Consensus 159 p~~~~K~~~~~~~~~~~~~~~~~~~~~GD~~nD~~~~~~~~~~va 203 (204)
T TIGR01484 159 PAGVDKGSALQALLKELNGKRDEILAFGDSGNDEEMFEVAGLAVA 203 (204)
T ss_pred cCCCChHHHHHHHHHHhCCCHHHEEEEcCCHHHHHHHHHcCCceE
Confidence 367788899999999999999999999999999999999999765
No 150
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=98.31 E-value=3.1e-05 Score=70.57 Aligned_cols=105 Identities=19% Similarity=0.234 Sum_probs=69.6
Q ss_pred CCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhc--------CCccccceEEecCC-----------------C
Q 021360 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQH--------GWNESFSVIVGSDE-----------------V 144 (313)
Q Consensus 90 ~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~--------~~~~~f~~v~~~~~-----------------~ 144 (313)
+...|.+..+|+.|++.|.++.++|||+-.++...+.-.+ .+.++||.|++... .
T Consensus 182 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv~A~KP~FF~~~~pfr~vd~~~ 261 (448)
T PF05761_consen 182 IHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFDVVIVDARKPGFFTEGRPFREVDTET 261 (448)
T ss_dssp EE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCECEEEES--CCHHHCT---EEEEETTT
T ss_pred ccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhheeEEEEcCCCCcccCCCCceEEEECCC
Confidence 3446899999999999999999999999999887773222 46789999988531 0
Q ss_pred C---C-------CCC---ChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHc-CCeEEEeCCC
Q 021360 145 R---T-------GKP---SPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAA-GMEVVAVPSL 194 (313)
Q Consensus 145 ~---~-------~kp---~~~~~~~~~~~~~~~~~~~i~vgD~~-~Di~~a~~~-G~~~i~v~~~ 194 (313)
+ . .++ .......+.+.+|....+|++|||+. .|+...+.. ||+++.|-+.
T Consensus 262 g~l~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~g~~VLY~GDhi~~Di~~~k~~~gWrT~~Ii~E 326 (448)
T PF05761_consen 262 GKLKWGKYVGPLEKGKVYSGGNWDQLHKLLGWRGKEVLYFGDHIYGDILKSKKRHGWRTAAIIPE 326 (448)
T ss_dssp SSEECS---SS--TC-EEEE--HHHHHHHCT--GGGEEEEESSTTTTHHHHHHHH-SEEEEE-TT
T ss_pred CccccccccccccCCCEeecCCHHHHHHHHccCCCeEEEECCchhhhhhhhccccceEEEEEehh
Confidence 0 0 011 11224556667888899999999999 698887666 9999999774
No 151
>COG4996 Predicted phosphatase [General function prediction only]
Probab=98.29 E-value=2.3e-06 Score=62.69 Aligned_cols=90 Identities=17% Similarity=0.115 Sum_probs=65.3
Q ss_pred ccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHH------Hc
Q 021360 88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAK------RL 161 (313)
Q Consensus 88 ~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~------~~ 161 (313)
.++.++|.+.+++..++..|+-+..+|-+.....-..| +.+++..+|+.++.-..- .|. .++..++. ..
T Consensus 38 ~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aL-ral~~~~yFhy~ViePhP--~K~--~ML~~llr~i~~er~~ 112 (164)
T COG4996 38 REVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKAL-RALDLLQYFHYIVIEPHP--YKF--LMLSQLLREINTERNQ 112 (164)
T ss_pred eEEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHH-HHhchhhhEEEEEecCCC--hhH--HHHHHHHHHHHHhhcc
Confidence 35789999999999999999988888877666665567 789999999988763221 111 23333332 34
Q ss_pred CCCCCcEEEEecCHhhHHHHH
Q 021360 162 NMEPSSSLVIEDSVIGVVAGK 182 (313)
Q Consensus 162 ~~~~~~~i~vgD~~~Di~~a~ 182 (313)
.++|.++++++|..-.+.-..
T Consensus 113 ~ikP~~Ivy~DDR~iH~~~Iw 133 (164)
T COG4996 113 KIKPSEIVYLDDRRIHFGNIW 133 (164)
T ss_pred ccCcceEEEEecccccHHHHH
Confidence 588999999999986655533
No 152
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=98.27 E-value=1.4e-05 Score=62.75 Aligned_cols=92 Identities=14% Similarity=0.206 Sum_probs=57.1
Q ss_pred CchHHHHHHHHHHCCCCEEEEeCCchHHHH---HHHHhh-----cCCccccceEEecCCCC---------CCCC---ChH
Q 021360 93 LPGANRLIKHLSCHGVPMALASNSHRATIE---SKISYQ-----HGWNESFSVIVGSDEVR---------TGKP---SPD 152 (313)
Q Consensus 93 ~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~---~~l~~~-----~~~~~~f~~v~~~~~~~---------~~kp---~~~ 152 (313)
.|++.++++++++.|++++++|+++..... ..+ +. .++.. ..++++.... ..++ +.+
T Consensus 29 ~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l-~~~~~~~~~lp~--g~li~~~g~~~~~~~~e~i~~~~~~~K~~ 105 (157)
T smart00775 29 HPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYL-SQIKQDGHNLPH--GPVLLSPDRLFAALHREVISKKPEVFKIA 105 (157)
T ss_pred CHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHH-HHhhhccccCCC--ceEEEcCCcchhhhhcccccCCHHHHHHH
Confidence 579999999999999999999999877663 444 33 22321 2344333211 1222 233
Q ss_pred HHHHHHHHcCCCCCc-EEEEecCHhhHHHHHHcCCe
Q 021360 153 IFLEAAKRLNMEPSS-SLVIEDSVIGVVAGKAAGME 187 (313)
Q Consensus 153 ~~~~~~~~~~~~~~~-~i~vgD~~~Di~~a~~~G~~ 187 (313)
.++.+.+.+.-.--. +..+||+.+|+.+-+++|+.
T Consensus 106 ~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~ 141 (157)
T smart00775 106 CLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIP 141 (157)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCC
Confidence 444444333211222 34588889999999999986
No 153
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=98.26 E-value=3.5e-06 Score=79.87 Aligned_cols=104 Identities=17% Similarity=0.184 Sum_probs=74.2
Q ss_pred CCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcEE
Q 021360 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (313)
Q Consensus 90 ~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i 169 (313)
.+++|++.++++.|++.|++++++|+.+...++..+ +++|+. ++. +. .++++.+.+ +++.-++++|+
T Consensus 404 d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia-~~lgi~-----~~~-~~--~p~~K~~~v----~~l~~~~~~v~ 470 (562)
T TIGR01511 404 DQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVA-KELGIN-----VRA-EV--LPDDKAALI----KELQEKGRVVA 470 (562)
T ss_pred ccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHH-HHcCCc-----EEc-cC--ChHHHHHHH----HHHHHcCCEEE
Confidence 468999999999999999999999999999888877 888983 221 11 122333433 33444678999
Q ss_pred EEecCHhhHHHHHHcCCeEEEeCCCCCccccccccceeec
Q 021360 170 VIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVIN 209 (313)
Q Consensus 170 ~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~ 209 (313)
|+||+.||+.+++.+|+.+.+- .+ .+.....++.++.
T Consensus 471 ~VGDg~nD~~al~~A~vgia~g-~g--~~~a~~~Advvl~ 507 (562)
T TIGR01511 471 MVGDGINDAPALAQADVGIAIG-AG--TDVAIEAADVVLM 507 (562)
T ss_pred EEeCCCccHHHHhhCCEEEEeC-Cc--CHHHHhhCCEEEe
Confidence 9999999999999999854332 21 2222334666663
No 154
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=98.21 E-value=8.3e-05 Score=68.93 Aligned_cols=92 Identities=13% Similarity=0.043 Sum_probs=56.6
Q ss_pred CCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCC-C---C------CCC-C-C-hHHHHHHH
Q 021360 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE-V---R------TGK-P-S-PDIFLEAA 158 (313)
Q Consensus 92 ~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~-~---~------~~k-p-~-~~~~~~~~ 158 (313)
+.|.+.+.+ ++.|. .+++|.+++..++....+.+|+ |.+++.+- + + .+. . . .+-..++-
T Consensus 111 l~~~a~~~~---~~~g~-~vvVSASp~~~Vepfa~~~LGi----d~VIgTeLev~~~G~~TG~i~g~~~c~Ge~Kv~rl~ 182 (497)
T PLN02177 111 VHPETWRVF---NSFGK-RYIITASPRIMVEPFVKTFLGA----DKVLGTELEVSKSGRATGFMKKPGVLVGDHKRDAVL 182 (497)
T ss_pred cCHHHHHHH---HhCCC-EEEEECCcHHHHHHHHHHcCCC----CEEEecccEECcCCEEeeeecCCCCCccHHHHHHHH
Confidence 666666544 55664 4999999999999888445788 55544331 0 0 000 0 1 11222232
Q ss_pred HHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeC
Q 021360 159 KRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVP 192 (313)
Q Consensus 159 ~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~ 192 (313)
+.+|.+... ++.||+.+|..+...++-..++-.
T Consensus 183 ~~~g~~~~~-~aYgDS~sD~plL~~a~e~y~V~~ 215 (497)
T PLN02177 183 KEFGDALPD-LGLGDRETDHDFMSICKEGYMVPR 215 (497)
T ss_pred HHhCCCCce-EEEECCccHHHHHHhCCccEEeCC
Confidence 445544444 899999999999999998754433
No 155
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=98.20 E-value=9.9e-06 Score=59.47 Aligned_cols=115 Identities=12% Similarity=0.180 Sum_probs=88.9
Q ss_pred cCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcE
Q 021360 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 168 (313)
Q Consensus 89 ~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 168 (313)
.-.+++.+.+.+++|++. +.++++|+....++...+ +..|+.. +.++.+ .+++.-.++++.++-+.+.|
T Consensus 28 gGklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~la-e~~gi~~--~rv~a~-------a~~e~K~~ii~eLkk~~~k~ 96 (152)
T COG4087 28 GGKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLA-EFVGIPV--ERVFAG-------ADPEMKAKIIRELKKRYEKV 96 (152)
T ss_pred CcEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHH-HHcCCce--eeeecc-------cCHHHHHHHHHHhcCCCcEE
Confidence 346889999999999999 999999988888887776 7777632 333332 34577778888888778999
Q ss_pred EEEecCHhhHHHHHHcCCeEEEeCCCCCccccccccceeecccccc
Q 021360 169 LVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDL 214 (313)
Q Consensus 169 i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~~l~e~ 214 (313)
+||||+.||+.+.+++...++.+............++.++++..+.
T Consensus 97 vmVGnGaND~laLr~ADlGI~tiq~e~v~~r~l~~ADvvik~i~e~ 142 (152)
T COG4087 97 VMVGNGANDILALREADLGICTIQQEGVPERLLLTADVVLKEIAEI 142 (152)
T ss_pred EEecCCcchHHHhhhcccceEEeccCCcchHHHhhchhhhhhHHHH
Confidence 9999999999999999998888876444444445678888777653
No 156
>PLN02382 probable sucrose-phosphatase
Probab=98.19 E-value=4e-05 Score=69.77 Aligned_cols=48 Identities=19% Similarity=0.133 Sum_probs=40.6
Q ss_pred CCCCChHHHHHHHHHc---CCCCCcEEEEecCHhhHHHHHHcC-CeEEEeCC
Q 021360 146 TGKPSPDIFLEAAKRL---NMEPSSSLVIEDSVIGVVAGKAAG-MEVVAVPS 193 (313)
Q Consensus 146 ~~kp~~~~~~~~~~~~---~~~~~~~i~vgD~~~Di~~a~~~G-~~~i~v~~ 193 (313)
.+-.+...++.+++++ |+++++++++||+.||++|.+.+| ..+++-+.
T Consensus 172 ~g~sKg~Al~~L~~~~~~~gi~~~~~iafGDs~NDleMl~~ag~~gvam~NA 223 (413)
T PLN02382 172 QGAGKGQALAYLLKKLKAEGKAPVNTLVCGDSGNDAELFSVPDVYGVMVSNA 223 (413)
T ss_pred CCCCHHHHHHHHHHHhhhcCCChhcEEEEeCCHHHHHHHhcCCCCEEEEcCC
Confidence 4555678999999998 999999999999999999999999 56655443
No 157
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=98.16 E-value=1.8e-05 Score=67.06 Aligned_cols=47 Identities=21% Similarity=0.164 Sum_probs=37.0
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCC
Q 021360 146 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 146 ~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~ 193 (313)
.+-.+...++.+++++++++++++++|||.||+.|. ..+...++|..
T Consensus 162 ~~a~K~~Al~~L~~~~~~~~~~vl~aGDSgND~~mL-~~~~~~vvV~N 208 (247)
T PF05116_consen 162 KGASKGAALRYLMERWGIPPEQVLVAGDSGNDLEML-EGGDHGVVVGN 208 (247)
T ss_dssp TT-SHHHHHHHHHHHHT--GGGEEEEESSGGGHHHH-CCSSEEEE-TT
T ss_pred CCCCHHHHHHHHHHHhCCCHHHEEEEeCCCCcHHHH-cCcCCEEEEcC
Confidence 555677899999999999999999999999999999 66666667655
No 158
>PRK10671 copA copper exporting ATPase; Provisional
Probab=98.16 E-value=9.1e-06 Score=80.82 Aligned_cols=89 Identities=17% Similarity=0.170 Sum_probs=71.4
Q ss_pred CCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcEE
Q 021360 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (313)
Q Consensus 90 ~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i 169 (313)
.+++|++.+.++.|++.|++++++|+......+... +++|+..+ +..- .|+...+++++++.++++++
T Consensus 649 d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia-~~lgi~~~----~~~~-------~p~~K~~~i~~l~~~~~~v~ 716 (834)
T PRK10671 649 DPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIA-KEAGIDEV----IAGV-------LPDGKAEAIKRLQSQGRQVA 716 (834)
T ss_pred CcchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCCCEE----EeCC-------CHHHHHHHHHHHhhcCCEEE
Confidence 367899999999999999999999999998888777 88999543 3221 12334556667777788999
Q ss_pred EEecCHhhHHHHHHcCCeEEE
Q 021360 170 VIEDSVIGVVAGKAAGMEVVA 190 (313)
Q Consensus 170 ~vgD~~~Di~~a~~~G~~~i~ 190 (313)
||||+.||+.+++.+|+.+.+
T Consensus 717 ~vGDg~nD~~al~~Agvgia~ 737 (834)
T PRK10671 717 MVGDGINDAPALAQADVGIAM 737 (834)
T ss_pred EEeCCHHHHHHHHhCCeeEEe
Confidence 999999999999999995544
No 159
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=98.13 E-value=9.1e-06 Score=81.17 Aligned_cols=115 Identities=20% Similarity=0.196 Sum_probs=86.2
Q ss_pred CCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCC----------------CCCCChHHH
Q 021360 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR----------------TGKPSPDIF 154 (313)
Q Consensus 91 ~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~----------------~~kp~~~~~ 154 (313)
+++|++.+.++.|++.|+++.++|+.......... +..|+...++.++.+.+.. .....|+..
T Consensus 528 p~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia-~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~P~~K 606 (884)
T TIGR01522 528 PPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIA-RRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARASPEHK 606 (884)
T ss_pred cchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEECCHHHH
Confidence 67899999999999999999999999999988777 8899987666665554332 223556666
Q ss_pred HHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCccccccccceee
Q 021360 155 LEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI 208 (313)
Q Consensus 155 ~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii 208 (313)
..+.+.++-..+.+.|+||+.||..+.++|++.+.+-..+ .+.....|+.++
T Consensus 607 ~~iv~~lq~~g~~v~mvGDGvND~pAl~~AdVGia~g~~g--~~va~~aaDivl 658 (884)
T TIGR01522 607 MKIVKALQKRGDVVAMTGDGVNDAPALKLADIGVAMGQTG--TDVAKEAADMIL 658 (884)
T ss_pred HHHHHHHHHCCCEEEEECCCcccHHHHHhCCeeEecCCCc--CHHHHHhcCEEE
Confidence 7777766666788999999999999999999765442111 111233567776
No 160
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.11 E-value=6e-05 Score=64.26 Aligned_cols=47 Identities=15% Similarity=0.008 Sum_probs=34.2
Q ss_pred CCCChHHHHHHHHHcCC--CCCcEEEEecCHhhHHHHHHcCCeEEEeCC
Q 021360 147 GKPSPDIFLEAAKRLNM--EPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 147 ~kp~~~~~~~~~~~~~~--~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~ 193 (313)
..++...++.+.+.+.- .+-.++.+||++||+.|.+.+.+.+++-.+
T Consensus 206 ~~dKg~A~~~L~~~y~~~~~~~~tiaLGDspND~~mLe~~D~~vvi~~~ 254 (302)
T PRK12702 206 SLPGEQAVQLLLDCYQRHLGPIKALGIGCSPPDLAFLRWSEQKVVLPSP 254 (302)
T ss_pred CCCHHHHHHHHHHHHHhccCCceEEEecCChhhHHHHHhCCeeEEecCC
Confidence 33455666666665543 344789999999999999999998766433
No 161
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=98.11 E-value=0.00029 Score=59.71 Aligned_cols=105 Identities=15% Similarity=0.234 Sum_probs=73.0
Q ss_pred cCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHH--hhcCCcc--c-c--ceEE-----ec--C---------CCC
Q 021360 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKIS--YQHGWNE--S-F--SVIV-----GS--D---------EVR 145 (313)
Q Consensus 89 ~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~--~~~~~~~--~-f--~~v~-----~~--~---------~~~ 145 (313)
.-...+.+.+++..|++.|+++..+|..+.......+. ..+|+.- . | +..+ .. . -+.
T Consensus 79 ~~lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft 158 (252)
T PF11019_consen 79 MELIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFT 158 (252)
T ss_pred eEEcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEe
Confidence 34456789999999999999999999888766544441 4455421 1 0 0001 00 0 012
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHH----HHHcCCeEEEeCC
Q 021360 146 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVA----GKAAGMEVVAVPS 193 (313)
Q Consensus 146 ~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~----a~~~G~~~i~v~~ 193 (313)
.+..+.+.+..++.+.|..|+.+|||+|+..++.. ++..|+..+.+--
T Consensus 159 ~~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Y 210 (252)
T PF11019_consen 159 GGQDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFHY 210 (252)
T ss_pred CCCccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEE
Confidence 45566799999999999999999999999987765 5667888777654
No 162
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=98.08 E-value=0.0002 Score=67.84 Aligned_cols=47 Identities=6% Similarity=-0.020 Sum_probs=41.2
Q ss_pred CCCChHHHHHHHHHcCCCCCcEEEE--ecCHhhHHHHHHcCCeEEEeCC
Q 021360 147 GKPSPDIFLEAAKRLNMEPSSSLVI--EDSVIGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 147 ~kp~~~~~~~~~~~~~~~~~~~i~v--gD~~~Di~~a~~~G~~~i~v~~ 193 (313)
+-.+...++.+++.++++.++++.| ||+.||+.|.+.+|..+++-.+
T Consensus 611 gvdKG~AL~~L~e~~gI~~~eViafalGDs~NDisMLe~Ag~gVAM~~~ 659 (694)
T PRK14502 611 GNDKGKAIKILNELFRLNFGNIHTFGLGDSENDYSMLETVDSPILVQRP 659 (694)
T ss_pred CCCHHHHHHHHHHHhCCCccceEEEEcCCcHhhHHHHHhCCceEEEcCC
Confidence 4556688999999999999999998 9999999999999998877554
No 163
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=97.95 E-value=9.7e-06 Score=67.73 Aligned_cols=101 Identities=16% Similarity=0.166 Sum_probs=59.8
Q ss_pred CCCCchHHHHHHHHHHCCCCEEEEeCCchHHH---HHHHHhhcCCccccceEEecCCCCCC---CCChHHHHHHHHHcCC
Q 021360 90 VKALPGANRLIKHLSCHGVPMALASNSHRATI---ESKISYQHGWNESFSVIVGSDEVRTG---KPSPDIFLEAAKRLNM 163 (313)
Q Consensus 90 ~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~---~~~l~~~~~~~~~f~~v~~~~~~~~~---kp~~~~~~~~~~~~~~ 163 (313)
.+..|++.++++.+.+.|+.++++|+.+.... ...| ...|....-..++-+...... ......-+..+.+.|+
T Consensus 114 ~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL-~~~G~~~~~~l~lr~~~~~~~~~~~~yK~~~r~~i~~~Gy 192 (229)
T PF03767_consen 114 APAIPGALELYNYARSRGVKVFFITGRPESQREATEKNL-KKAGFPGWDHLILRPDKDPSKKSAVEYKSERRKEIEKKGY 192 (229)
T ss_dssp GEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHH-HHHTTSTBSCGEEEEESSTSS------SHHHHHHHHHTTE
T ss_pred CcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHH-HHcCCCccchhccccccccccccccccchHHHHHHHHcCC
Confidence 47889999999999999999999999876533 2334 556754432333333222111 1112333333444333
Q ss_pred CCCcEEEEecCHhhHHHHHHc---CCeEEEeCC
Q 021360 164 EPSSSLVIEDSVIGVVAGKAA---GMEVVAVPS 193 (313)
Q Consensus 164 ~~~~~i~vgD~~~Di~~a~~~---G~~~i~v~~ 193 (313)
. =+++|||..+|+..++.. +.+++..+.
T Consensus 193 ~--Ii~~iGD~~~D~~~~~~~~~~~~r~f~lPN 223 (229)
T PF03767_consen 193 R--IIANIGDQLSDFSGAKTAGARAERWFKLPN 223 (229)
T ss_dssp E--EEEEEESSGGGCHCTHHHHHHHTTEEE-TT
T ss_pred c--EEEEeCCCHHHhhcccccccccceEEEcCC
Confidence 3 267799999999984333 344555443
No 164
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=97.90 E-value=0.00018 Score=60.59 Aligned_cols=102 Identities=12% Similarity=0.148 Sum_probs=61.7
Q ss_pred ccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHH---HHHHHhhcCCccccceEEecCCCCCCCCChHHHH----HHHHH
Q 021360 88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATI---ESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFL----EAAKR 160 (313)
Q Consensus 88 ~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~---~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~----~~~~~ 160 (313)
...+..|++.++.+.+++.|+.++++|+.++..- ...| ...|...+ +.++....-...+.+...++ ..+.+
T Consensus 142 ~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL-~kaGy~~~-~~LiLR~~~D~~~~~av~yKs~~R~~li~ 219 (275)
T TIGR01680 142 GEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANL-KKAGYHTW-EKLILKDPQDNSAENAVEYKTAARAKLIQ 219 (275)
T ss_pred ccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHH-HHcCCCCc-ceeeecCCCCCccchhHHHHHHHHHHHHH
Confidence 4678899999999999999999999999986543 2233 45666533 55555432211222212222 11122
Q ss_pred cCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCC
Q 021360 161 LNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 161 ~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~ 193 (313)
-|+ .=+..|||..+|+......+-++...+.
T Consensus 220 eGY--rIv~~iGDq~sDl~G~~~g~~RtFKLPN 250 (275)
T TIGR01680 220 EGY--NIVGIIGDQWNDLKGEHRGAIRSFKLPN 250 (275)
T ss_pred cCc--eEEEEECCCHHhccCCCccCcceecCCC
Confidence 222 2346689999999665532356666655
No 165
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=97.89 E-value=3.4e-06 Score=66.56 Aligned_cols=92 Identities=18% Similarity=0.211 Sum_probs=61.2
Q ss_pred cCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCC-ccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCc
Q 021360 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW-NESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (313)
Q Consensus 89 ~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~-~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 167 (313)
.+..+||+.++|+.+.+. +.+++.|.+.+.++..++ +.+.- ...|+.++..+.+...+... .+-+..++.+.++
T Consensus 34 ~v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~-~~ldp~~~~~~~~~~r~~~~~~~~~~---~KdL~~l~~~~~~ 108 (159)
T PF03031_consen 34 YVKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVL-DALDPNGKLFSRRLYRDDCTFDKGSY---IKDLSKLGRDLDN 108 (159)
T ss_dssp EEEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHH-HHHTTTTSSEEEEEEGGGSEEETTEE---E--GGGSSS-GGG
T ss_pred eEeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHH-Hhhhhhcccccccccccccccccccc---ccchHHHhhcccc
Confidence 356789999999999766 999999999999998888 55555 45678888777664222211 1445566778999
Q ss_pred EEEEecCHhhHHHHHHcC
Q 021360 168 SLVIEDSVIGVVAGKAAG 185 (313)
Q Consensus 168 ~i~vgD~~~Di~~a~~~G 185 (313)
+++|+|++.-...-...+
T Consensus 109 vvivDD~~~~~~~~~~N~ 126 (159)
T PF03031_consen 109 VVIVDDSPRKWALQPDNG 126 (159)
T ss_dssp EEEEES-GGGGTTSGGGE
T ss_pred EEEEeCCHHHeeccCCce
Confidence 999999987543333333
No 166
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=97.86 E-value=0.00014 Score=56.53 Aligned_cols=96 Identities=17% Similarity=0.158 Sum_probs=65.1
Q ss_pred CCCchHHHHHHHHHHCCCCEEEEeCCchHH---HHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCc
Q 021360 91 KALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (313)
Q Consensus 91 ~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~---~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 167 (313)
.+.+-++++++-...+|-.++++|+..+.. +...|++.+.+......++.++.- ||..-.-..++...++.
T Consensus 114 IPKevA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m~pv~f~Gdk~---k~~qy~Kt~~i~~~~~~--- 187 (237)
T COG3700 114 IPKEVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNMNPVIFAGDKP---KPGQYTKTQWIQDKNIR--- 187 (237)
T ss_pred chHHHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCCcceeeccCCC---CcccccccHHHHhcCce---
Confidence 344557788888899999999999876543 334455667775554566666432 33222223344444554
Q ss_pred EEEEecCHhhHHHHHHcCCeEEEeCC
Q 021360 168 SLVIEDSVIGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 168 ~i~vgD~~~Di~~a~~~G~~~i~v~~ 193 (313)
++.||+.+|+.+|+++|.+-+-+-+
T Consensus 188 -IhYGDSD~Di~AAkeaG~RgIRilR 212 (237)
T COG3700 188 -IHYGDSDNDITAAKEAGARGIRILR 212 (237)
T ss_pred -EEecCCchhhhHHHhcCccceeEEe
Confidence 8999999999999999998777655
No 167
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=97.82 E-value=0.00013 Score=71.41 Aligned_cols=88 Identities=16% Similarity=0.129 Sum_probs=67.4
Q ss_pred CCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcEE
Q 021360 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (313)
Q Consensus 90 ~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i 169 (313)
-+++|++.+.+++|++.|++++++|+.......... +.+|+..++ . .. |+.-..++++++ .+..|+
T Consensus 567 d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia-~~lgi~~~~------~----~~--p~~K~~~v~~l~-~~~~v~ 632 (741)
T PRK11033 567 DTLRADARQAISELKALGIKGVMLTGDNPRAAAAIA-GELGIDFRA------G----LL--PEDKVKAVTELN-QHAPLA 632 (741)
T ss_pred cCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHcCCCeec------C----CC--HHHHHHHHHHHh-cCCCEE
Confidence 378999999999999999999999999999888777 889984221 1 11 222333444444 346899
Q ss_pred EEecCHhhHHHHHHcCCeEEEe
Q 021360 170 VIEDSVIGVVAGKAAGMEVVAV 191 (313)
Q Consensus 170 ~vgD~~~Di~~a~~~G~~~i~v 191 (313)
|+||+.||..+++.+++.+.+-
T Consensus 633 mvGDgiNDapAl~~A~vgia~g 654 (741)
T PRK11033 633 MVGDGINDAPAMKAASIGIAMG 654 (741)
T ss_pred EEECCHHhHHHHHhCCeeEEec
Confidence 9999999999999999766553
No 168
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.68 E-value=0.00051 Score=61.73 Aligned_cols=93 Identities=19% Similarity=0.208 Sum_probs=73.3
Q ss_pred chHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCC----CCCCChHHHHHHHHHcCCCCCcEE
Q 021360 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR----TGKPSPDIFLEAAKRLNMEPSSSL 169 (313)
Q Consensus 94 pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~----~~kp~~~~~~~~~~~~~~~~~~~i 169 (313)
....+.+..|+++|+-++++|-.....++....++. +.++--+++. +..|+.+.++++++++++..+..+
T Consensus 258 k~fQ~~Ik~l~kqGVlLav~SKN~~~da~evF~khp------~MiLkeedfa~~~iNW~~K~eNirkIAkklNlg~dSmv 331 (574)
T COG3882 258 KTFQNFIKGLKKQGVLLAVCSKNTEKDAKEVFRKHP------DMILKEEDFAVFQINWDPKAENIRKIAKKLNLGLDSMV 331 (574)
T ss_pred HHHHHHHHHHHhccEEEEEecCCchhhHHHHHhhCC------CeEeeHhhhhhheecCCcchhhHHHHHHHhCCCccceE
Confidence 345578889999999999999888888887774443 5555544443 677889999999999999999999
Q ss_pred EEecCHhhHHHHHHcCCeEEEeCC
Q 021360 170 VIEDSVIGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 170 ~vgD~~~Di~~a~~~G~~~i~v~~ 193 (313)
+++|++...+--+.-+- +.+++-
T Consensus 332 FiDD~p~ErE~vk~~~~-v~Vi~~ 354 (574)
T COG3882 332 FIDDNPAERELVKRELP-VSVIEF 354 (574)
T ss_pred EecCCHHHHHHHHhcCc-eeeccC
Confidence 99999998888777775 444443
No 169
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.00067 Score=52.24 Aligned_cols=95 Identities=16% Similarity=0.117 Sum_probs=58.4
Q ss_pred cCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcE
Q 021360 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 168 (313)
Q Consensus 89 ~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 168 (313)
+..+..++...|..+++. .+++.+|....++.+..-.-...-...++.+...+. ..| ..+.+.+.++
T Consensus 70 e~l~~q~v~~~L~~~~e~-~~L~~itar~~dl~~iT~~~l~~q~ih~~~l~i~g~--h~K------V~~vrth~id---- 136 (194)
T COG5663 70 EALLAQLVKQVLPSLKEE-HRLIYITARKADLTRITYAWLFIQNIHYDHLEIVGL--HHK------VEAVRTHNID---- 136 (194)
T ss_pred HHHHHHHHHHHhHHHHhh-ceeeeeehhhHHHHHHHHHHHHHhccchhhhhhhcc--ccc------chhhHhhccC----
Confidence 344556788889999888 678888877666543222111111122344332211 111 2344566677
Q ss_pred EEEecCH-hhHHHHHHcCCeEEEeCCCCC
Q 021360 169 LVIEDSV-IGVVAGKAAGMEVVAVPSLPK 196 (313)
Q Consensus 169 i~vgD~~-~Di~~a~~~G~~~i~v~~~~~ 196 (313)
+++.|+. |-.+.|+.+|++++.+++...
T Consensus 137 lf~ed~~~na~~iAk~~~~~vilins~yn 165 (194)
T COG5663 137 LFFEDSHDNAGQIAKNAGIPVILINSPYN 165 (194)
T ss_pred ccccccCchHHHHHHhcCCcEEEecCccc
Confidence 8899998 567778889999999998543
No 170
>PLN02423 phosphomannomutase
Probab=97.54 E-value=3.1e-05 Score=65.61 Aligned_cols=43 Identities=9% Similarity=-0.164 Sum_probs=35.1
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEec----CHhhHHHHHHcCCeEEEeCC
Q 021360 146 TGKPSPDIFLEAAKRLNMEPSSSLVIED----SVIGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 146 ~~kp~~~~~~~~~~~~~~~~~~~i~vgD----~~~Di~~a~~~G~~~i~v~~ 193 (313)
.+-.+...++.++ +++++++||| +.||++|.+.-|+.++.|..
T Consensus 186 ~gvnKg~al~~L~-----~~~e~~aFGD~~~~~~ND~eMl~~~~~~~~~~~~ 232 (245)
T PLN02423 186 QGWDKTYCLQFLE-----DFDEIHFFGDKTYEGGNDHEIFESERTIGHTVTS 232 (245)
T ss_pred CCCCHHHHHHHhc-----CcCeEEEEeccCCCCCCcHHHHhCCCcceEEeCC
Confidence 4444556666665 8999999999 69999999999998888866
No 171
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=97.49 E-value=0.00064 Score=65.32 Aligned_cols=89 Identities=13% Similarity=0.120 Sum_probs=68.7
Q ss_pred CCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEE
Q 021360 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (313)
Q Consensus 91 ~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~ 170 (313)
++.|++.+.+++|++.|+++.++|+.......... +.+|+. .++.. . .|+.-..+.+++.-..+.+.|
T Consensus 446 ~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA-~~lGI~----~v~a~-----~--~PedK~~~v~~lq~~g~~Vam 513 (675)
T TIGR01497 446 IVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIA-AEAGVD----DFIAE-----A--TPEDKIALIRQEQAEGKLVAM 513 (675)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHcCCC----EEEcC-----C--CHHHHHHHHHHHHHcCCeEEE
Confidence 77899999999999999999999999988888777 889994 33321 2 234444444444334457999
Q ss_pred EecCHhhHHHHHHcCCeEEEe
Q 021360 171 IEDSVIGVVAGKAAGMEVVAV 191 (313)
Q Consensus 171 vgD~~~Di~~a~~~G~~~i~v 191 (313)
+||+.||..+.+.+++.+.+-
T Consensus 514 vGDG~NDapAL~~AdvGiAm~ 534 (675)
T TIGR01497 514 TGDGTNDAPALAQADVGVAMN 534 (675)
T ss_pred ECCCcchHHHHHhCCEeEEeC
Confidence 999999999999999976654
No 172
>PLN02645 phosphoglycolate phosphatase
Probab=97.49 E-value=0.001 Score=58.48 Aligned_cols=90 Identities=16% Similarity=0.141 Sum_probs=67.1
Q ss_pred CCCchHHHHHHHHHHCCCCEEEEeCCchHH---HHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCc
Q 021360 91 KALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (313)
Q Consensus 91 ~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~---~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 167 (313)
.++||+.++|++|++.|++++++||++... +...+ +.+|+...++.++++. ......++..++...+
T Consensus 44 ~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l-~~lGi~~~~~~I~ts~---------~~~~~~l~~~~~~~~~ 113 (311)
T PLN02645 44 KLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKF-ESLGLNVTEEEIFSSS---------FAAAAYLKSINFPKDK 113 (311)
T ss_pred ccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHH-HHCCCCCChhhEeehH---------HHHHHHHHhhccCCCC
Confidence 367899999999999999999999987333 33345 6688876667776653 2445555665665555
Q ss_pred EEEEecCHhhHHHHHHcCCeEEE
Q 021360 168 SLVIEDSVIGVVAGKAAGMEVVA 190 (313)
Q Consensus 168 ~i~vgD~~~Di~~a~~~G~~~i~ 190 (313)
.++++++..+.+.++.+|+.++.
T Consensus 114 ~V~viG~~~~~~~l~~~Gi~~~~ 136 (311)
T PLN02645 114 KVYVIGEEGILEELELAGFQYLG 136 (311)
T ss_pred EEEEEcCHHHHHHHHHCCCEEec
Confidence 67888888899999999998654
No 173
>PTZ00174 phosphomannomutase; Provisional
Probab=97.49 E-value=0.00026 Score=60.13 Aligned_cols=30 Identities=13% Similarity=0.324 Sum_probs=22.2
Q ss_pred HHHHHHHHHHCCCCEEEEeCCchHHHHHHH
Q 021360 96 ANRLIKHLSCHGVPMALASNSHRATIESKI 125 (313)
Q Consensus 96 v~e~l~~l~~~g~~~~i~s~~~~~~~~~~l 125 (313)
..+.|+++++.|+.++++|+.+...+...+
T Consensus 27 ~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l 56 (247)
T PTZ00174 27 MKDTLAKLKSKGFKIGVVGGSDYPKIKEQL 56 (247)
T ss_pred HHHHHHHHHHCCCEEEEEcCCCHHHHHHHH
Confidence 346677888888888888888777665444
No 174
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=97.46 E-value=0.00044 Score=69.54 Aligned_cols=116 Identities=16% Similarity=0.090 Sum_probs=79.6
Q ss_pred CCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCcccc----ceEEecCCC----------------CCCCCC
Q 021360 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF----SVIVGSDEV----------------RTGKPS 150 (313)
Q Consensus 91 ~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f----~~v~~~~~~----------------~~~kp~ 150 (313)
+++|++.+.++.+++.|+++.++|+.......... +..|+...- ...+.+.+. -..+..
T Consensus 537 plr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia-~~~gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ar~~ 615 (917)
T TIGR01116 537 PPRPEVADAIEKCRTAGIRVIMITGDNKETAEAIC-RRIGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLFSRVE 615 (917)
T ss_pred CCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHH-HHcCCCCCCccccceeeeHHHHhhCCHHHHHHhhhcCeEEEecC
Confidence 67899999999999999999999998888777666 778875311 112222111 012233
Q ss_pred hHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCccccccccceeecc
Q 021360 151 PDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINS 210 (313)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~~ 210 (313)
|+.-.++.+.++-..+.+.|+||+.||+.|.+.+++.+.+- .+ .+.....|+.++.+
T Consensus 616 P~~K~~iV~~lq~~g~~va~iGDG~ND~~alk~AdVGia~g-~g--~~~ak~aAD~vl~d 672 (917)
T TIGR01116 616 PSHKSELVELLQEQGEIVAMTGDGVNDAPALKKADIGIAMG-SG--TEVAKEASDMVLAD 672 (917)
T ss_pred HHHHHHHHHHHHhcCCeEEEecCCcchHHHHHhCCeeEECC-CC--cHHHHHhcCeEEcc
Confidence 45556666666656678889999999999999999965443 32 22223357777655
No 175
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=97.43 E-value=0.0025 Score=52.28 Aligned_cols=85 Identities=14% Similarity=0.202 Sum_probs=54.7
Q ss_pred ccCCCCchHHHHHHHHHHCCCCEEEEeCCchHH-HH---HHHHhhcCCccccc-eEEecCCCCCCCCChHHHHHHHHHcC
Q 021360 88 CKVKALPGANRLIKHLSCHGVPMALASNSHRAT-IE---SKISYQHGWNESFS-VIVGSDEVRTGKPSPDIFLEAAKRLN 162 (313)
Q Consensus 88 ~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~-~~---~~l~~~~~~~~~f~-~v~~~~~~~~~kp~~~~~~~~~~~~~ 162 (313)
....+.||+.+++...-+.|..+..+||...+. .. .-| .+.|+...-+ .++.- ...+++...++. .++
T Consensus 119 ~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nL-k~~g~~~~~~~~~llk---k~~k~Ke~R~~~-v~k-- 191 (274)
T COG2503 119 KKSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENL-KSEGLPQVLESHLLLK---KDKKSKEVRRQA-VEK-- 191 (274)
T ss_pred cccccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHH-HHcCcccccccceEEe---eCCCcHHHHHHH-Hhh--
Confidence 356889999999999999999999999997765 22 233 4556643222 22222 123333333333 333
Q ss_pred CCCCcEEEEecCHhhHHH
Q 021360 163 MEPSSSLVIEDSVIGVVA 180 (313)
Q Consensus 163 ~~~~~~i~vgD~~~Di~~ 180 (313)
..+-++.|||+..|...
T Consensus 192 -~~~iVm~vGDNl~DF~d 208 (274)
T COG2503 192 -DYKIVMLVGDNLDDFGD 208 (274)
T ss_pred -ccceeeEecCchhhhcc
Confidence 55568889999987654
No 176
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=97.41 E-value=0.0011 Score=49.62 Aligned_cols=31 Identities=13% Similarity=0.249 Sum_probs=25.7
Q ss_pred CCCchHHHHHHHHHHCCCCEEEEeCCchHHH
Q 021360 91 KALPGANRLIKHLSCHGVPMALASNSHRATI 121 (313)
Q Consensus 91 ~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~ 121 (313)
.+.+++.+.|+.+++.|+.++++|+.+....
T Consensus 24 ~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~ 54 (126)
T TIGR01689 24 APILAVIEKLRHYKALGFEIVISSSRNMRTY 54 (126)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCCchhh
Confidence 4566788999999999999999998876644
No 177
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=97.37 E-value=0.0015 Score=62.88 Aligned_cols=89 Identities=11% Similarity=0.092 Sum_probs=71.4
Q ss_pred CCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEE
Q 021360 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (313)
Q Consensus 91 ~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~ 170 (313)
++.|++.+.+++|++.|+++.++|+.......... +.+|+. .++. .-.|+.-.++.+.+.-.-+.+.|
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA-~elGI~----~v~A-------~~~PedK~~iV~~lQ~~G~~VaM 508 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGDNELTAATIA-KEAGVD----RFVA-------ECKPEDKINVIREEQAKGHIVAM 508 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCc----eEEc-------CCCHHHHHHHHHHHHhCCCEEEE
Confidence 78899999999999999999999999988888777 889994 3332 22446666666666555567999
Q ss_pred EecCHhhHHHHHHcCCeEEEe
Q 021360 171 IEDSVIGVVAGKAAGMEVVAV 191 (313)
Q Consensus 171 vgD~~~Di~~a~~~G~~~i~v 191 (313)
+||+.||..+.+++.+.+.+-
T Consensus 509 tGDGvNDAPALa~ADVGIAMg 529 (673)
T PRK14010 509 TGDGTNDAPALAEANVGLAMN 529 (673)
T ss_pred ECCChhhHHHHHhCCEEEEeC
Confidence 999999999999999876554
No 178
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=97.34 E-value=0.0015 Score=63.05 Aligned_cols=89 Identities=15% Similarity=0.135 Sum_probs=71.0
Q ss_pred CCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEE
Q 021360 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (313)
Q Consensus 91 ~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~ 170 (313)
++.|++.+.+++|++.|+++.++|+.......... +..|++ .++. .-.|+.-.++.+++.-.-+-+.|
T Consensus 445 ~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA-~elGId----~v~A-------~~~PedK~~iV~~lQ~~G~~VaM 512 (679)
T PRK01122 445 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIA-AEAGVD----DFLA-------EATPEDKLALIRQEQAEGRLVAM 512 (679)
T ss_pred cCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCc----EEEc-------cCCHHHHHHHHHHHHHcCCeEEE
Confidence 67899999999999999999999999988888777 889994 3332 22345556666665555567999
Q ss_pred EecCHhhHHHHHHcCCeEEEe
Q 021360 171 IEDSVIGVVAGKAAGMEVVAV 191 (313)
Q Consensus 171 vgD~~~Di~~a~~~G~~~i~v 191 (313)
+||+.||..+.+++.+.+.+-
T Consensus 513 tGDGvNDAPALa~ADVGIAMg 533 (679)
T PRK01122 513 TGDGTNDAPALAQADVGVAMN 533 (679)
T ss_pred ECCCcchHHHHHhCCEeEEeC
Confidence 999999999999999876655
No 179
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=97.25 E-value=0.00098 Score=67.32 Aligned_cols=100 Identities=15% Similarity=0.059 Sum_probs=73.3
Q ss_pred CCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCC----------------CCCCChHHH
Q 021360 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR----------------TGKPSPDIF 154 (313)
Q Consensus 91 ~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~----------------~~kp~~~~~ 154 (313)
++.|++.+.++.|++.|+++.++|+.....+.... +..|+...-..++.+.+.. ...-.|+.-
T Consensus 579 plr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA-~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~sPe~K 657 (941)
T TIGR01517 579 PLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIA-RNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVLARSSPLDK 657 (941)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCChHHHHHHH-HHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEEEECCHHHH
Confidence 67899999999999999999999999988887776 8888854322344433211 123344555
Q ss_pred HHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEe
Q 021360 155 LEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 191 (313)
Q Consensus 155 ~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v 191 (313)
.++.+.+.-.-+.+.|+||+.||..|.++|.+.+.+-
T Consensus 658 ~~iV~~lq~~g~vVam~GDGvNDapALk~AdVGIAmg 694 (941)
T TIGR01517 658 QLLVLMLKDMGEVVAVTGDGTNDAPALKLADVGFSMG 694 (941)
T ss_pred HHHHHHHHHCCCEEEEECCCCchHHHHHhCCcceecC
Confidence 5555555444567999999999999999999876543
No 180
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.22 E-value=0.0017 Score=62.77 Aligned_cols=91 Identities=19% Similarity=0.202 Sum_probs=69.9
Q ss_pred CCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcEE
Q 021360 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (313)
Q Consensus 90 ~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i 169 (313)
-++.|++.+.+++|++.|+++.++|+..+...+... +.+|++ .++.. -. |+.-.+..+++.-+-..+.
T Consensus 536 D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA-~~lGId----~v~Ae-----ll--PedK~~~V~~l~~~g~~Va 603 (713)
T COG2217 536 DELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIA-KELGID----EVRAE-----LL--PEDKAEIVRELQAEGRKVA 603 (713)
T ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcChH----hhecc-----CC--cHHHHHHHHHHHhcCCEEE
Confidence 478899999999999999999999999988888777 889994 33321 12 2444445555554447899
Q ss_pred EEecCHhhHHHHHHcCCeEEEeC
Q 021360 170 VIEDSVIGVVAGKAAGMEVVAVP 192 (313)
Q Consensus 170 ~vgD~~~Di~~a~~~G~~~i~v~ 192 (313)
||||+.||-.+...+.+.+.+-.
T Consensus 604 mVGDGINDAPALA~AdVGiAmG~ 626 (713)
T COG2217 604 MVGDGINDAPALAAADVGIAMGS 626 (713)
T ss_pred EEeCCchhHHHHhhcCeeEeecC
Confidence 99999999999999998655443
No 181
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=97.20 E-value=0.00094 Score=65.76 Aligned_cols=97 Identities=16% Similarity=0.135 Sum_probs=72.1
Q ss_pred CCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCC----------------------CCCC
Q 021360 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEV----------------------RTGK 148 (313)
Q Consensus 91 ~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~----------------------~~~k 148 (313)
++.|++.+.++.|++.|+++.++|+.......... +.+|+... ++.+++. -..+
T Consensus 442 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA-~~lGI~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vfAr 517 (755)
T TIGR01647 442 PPRHDTKETIERARHLGVEVKMVTGDHLAIAKETA-RRLGLGTN---IYTADVLLKGDNRDDLPSGELGEMVEDADGFAE 517 (755)
T ss_pred CChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCCCC---CcCHHHhcCCcchhhCCHHHHHHHHHhCCEEEe
Confidence 67899999999999999999999999988888777 88898531 2221111 0122
Q ss_pred CChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEe
Q 021360 149 PSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 191 (313)
Q Consensus 149 p~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v 191 (313)
-.|+.-.++.+.+.-.-+.+.|+||+.||..+.+.+.+.+.+-
T Consensus 518 ~~Pe~K~~iV~~lq~~G~~VamvGDGvNDapAL~~AdVGIAm~ 560 (755)
T TIGR01647 518 VFPEHKYEIVEILQKRGHLVGMTGDGVNDAPALKKADVGIAVA 560 (755)
T ss_pred cCHHHHHHHHHHHHhcCCEEEEEcCCcccHHHHHhCCeeEEec
Confidence 3445555566655555677999999999999999999876653
No 182
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=97.19 E-value=0.0015 Score=66.42 Aligned_cols=116 Identities=11% Similarity=0.086 Sum_probs=79.9
Q ss_pred CCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccc----------cceEEecCCCC---------------
Q 021360 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNES----------FSVIVGSDEVR--------------- 145 (313)
Q Consensus 91 ~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~----------f~~v~~~~~~~--------------- 145 (313)
++.|++.+.++.+++.|++++++|+.......... +..|+... -..++.+.+..
T Consensus 646 p~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA-~~~Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l~~~~~~~~ 724 (1053)
T TIGR01523 646 PPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIA-QEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVDDLKALCL 724 (1053)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHH-HHcCCCCccccccccccccceeeehHHhhhcCHHHHHHHhhcCe
Confidence 67899999999999999999999999988887777 78888532 12344443321
Q ss_pred -CCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCCCCCccccccccceeec
Q 021360 146 -TGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVIN 209 (313)
Q Consensus 146 -~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~ 209 (313)
...-.|+.-.++.+.+.-..+.+.|+||+.||..|.+.+++.+.+-..+.+ .....|+.++.
T Consensus 725 V~ar~sP~~K~~iV~~lq~~g~~Vam~GDGvNDapaLk~AdVGIAmg~~gt~--vak~aADivl~ 787 (1053)
T TIGR01523 725 VIARCAPQTKVKMIEALHRRKAFCAMTGDGVNDSPSLKMANVGIAMGINGSD--VAKDASDIVLS 787 (1053)
T ss_pred EEEecCHHHHHHHHHHHHhcCCeeEEeCCCcchHHHHHhCCccEecCCCccH--HHHHhcCEEEe
Confidence 122344555555555544556789999999999999999987665322222 12335666654
No 183
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.15 E-value=0.0021 Score=54.16 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=45.2
Q ss_pred CCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCC
Q 021360 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEV 144 (313)
Q Consensus 92 ~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~ 144 (313)
..|.+.+.|.+|++.|.-+++=|-+.++++...+ +.+++..+|+.++++...
T Consensus 143 r~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl-~~~~L~~~Fd~ii~~G~~ 194 (297)
T PF05152_consen 143 RDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSL-KELKLEGYFDIIICGGNK 194 (297)
T ss_pred CChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHH-HHhCCccccEEEEeCCcc
Confidence 3456778899999999999999999999999999 889999999999997643
No 184
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=97.13 E-value=0.0018 Score=64.83 Aligned_cols=98 Identities=9% Similarity=0.062 Sum_probs=71.8
Q ss_pred CCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCC----------------CCCCChHHH
Q 021360 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR----------------TGKPSPDIF 154 (313)
Q Consensus 91 ~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~----------------~~kp~~~~~ 154 (313)
++.|++.+.++.+++.|+++.++|+.......... +..|+.. +.++.+.+.. ...-.|+.-
T Consensus 515 p~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA-~~lGI~~--~~v~~g~~l~~~~~~el~~~~~~~~vfAr~~Pe~K 591 (867)
T TIGR01524 515 PPKESTKEAIAALFKNGINVKVLTGDNEIVTARIC-QEVGIDA--NDFLLGADIEELSDEELARELRKYHIFARLTPMQK 591 (867)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHcCCCC--CCeeecHhhhhCCHHHHHHHhhhCeEEEECCHHHH
Confidence 57899999999999999999999998888887666 8889852 2333332221 122334555
Q ss_pred HHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEe
Q 021360 155 LEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 191 (313)
Q Consensus 155 ~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v 191 (313)
.++.+.+.-.-+.+.|+||+.||..+.+.|.+.+.+-
T Consensus 592 ~~iV~~lq~~G~vVam~GDGvNDapALk~AdVGIAmg 628 (867)
T TIGR01524 592 SRIIGLLKKAGHTVGFLGDGINDAPALRKADVGISVD 628 (867)
T ss_pred HHHHHHHHhCCCEEEEECCCcccHHHHHhCCEEEEeC
Confidence 5555555445567999999999999999999976654
No 185
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=97.13 E-value=0.0014 Score=65.73 Aligned_cols=98 Identities=12% Similarity=0.108 Sum_probs=73.3
Q ss_pred CCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCC----------------CCCCChHHH
Q 021360 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR----------------TGKPSPDIF 154 (313)
Q Consensus 91 ~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~----------------~~kp~~~~~ 154 (313)
++.|++.+.++.|++.|+++.++|+.......... +.+|+.. +.++.+.+.. ...-.|+.-
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA-~~lGI~~--~~v~~G~el~~l~~~el~~~~~~~~VfAr~sPe~K 626 (902)
T PRK10517 550 PPKETTAPALKALKASGVTVKILTGDSELVAAKVC-HEVGLDA--GEVLIGSDIETLSDDELANLAERTTLFARLTPMHK 626 (902)
T ss_pred cchhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHcCCCc--cCceeHHHHHhCCHHHHHHHHhhCcEEEEcCHHHH
Confidence 56899999999999999999999999888887766 8889852 2344443321 122345555
Q ss_pred HHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEe
Q 021360 155 LEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 191 (313)
Q Consensus 155 ~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v 191 (313)
.++.+.+.-.-+-+.|+||+.||..+.+++.+.+.+-
T Consensus 627 ~~IV~~Lq~~G~vVam~GDGvNDaPALk~ADVGIAmg 663 (902)
T PRK10517 627 ERIVTLLKREGHVVGFMGDGINDAPALRAADIGISVD 663 (902)
T ss_pred HHHHHHHHHCCCEEEEECCCcchHHHHHhCCEEEEeC
Confidence 5555655545567899999999999999999876654
No 186
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=97.11 E-value=0.0017 Score=52.49 Aligned_cols=94 Identities=11% Similarity=0.042 Sum_probs=57.7
Q ss_pred CCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCcc--ccceEEecCCCC-------CCCCC-hHHHHHHHHH
Q 021360 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE--SFSVIVGSDEVR-------TGKPS-PDIFLEAAKR 160 (313)
Q Consensus 91 ~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~--~f~~v~~~~~~~-------~~kp~-~~~~~~~~~~ 160 (313)
...|++.++|+.+.+. |.++|.|.+...+++.++ ..+++.. .+...+.-+.+. ...+. ...+..+-.+
T Consensus 45 ~kRP~l~eFL~~~~~~-feIvVwTAa~~~ya~~~l-~~l~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKdL~~lw~~ 122 (195)
T TIGR02245 45 LMRPYLHEFLTSAYED-YDIVIWSATSMKWIEIKM-TELGVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKPLGVIWAL 122 (195)
T ss_pred EeCCCHHHHHHHHHhC-CEEEEEecCCHHHHHHHH-HHhcccCCccceEEEEeccccceeeEeeccCcEEEeecHHhhhh
Confidence 4789999999999995 999999999999999888 6555422 112111111110 01110 1112223234
Q ss_pred cC--CCCCcEEEEecCHhhHHHHHHcCC
Q 021360 161 LN--MEPSSSLVIEDSVIGVVAGKAAGM 186 (313)
Q Consensus 161 ~~--~~~~~~i~vgD~~~Di~~a~~~G~ 186 (313)
++ ++.+++++|+|++.-..+--..|+
T Consensus 123 l~~~~~~~ntiiVDd~p~~~~~~P~N~i 150 (195)
T TIGR02245 123 LPEFYSMKNTIMFDDLRRNFLMNPQNGL 150 (195)
T ss_pred cccCCCcccEEEEeCCHHHHhcCCCCcc
Confidence 43 478999999999976555444454
No 187
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=97.07 E-value=0.0048 Score=60.73 Aligned_cols=38 Identities=13% Similarity=-0.067 Sum_probs=31.1
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcC
Q 021360 146 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAG 185 (313)
Q Consensus 146 ~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G 185 (313)
.+-.+...++.+++ +++++.++++||+.||..|.+.++
T Consensus 654 ~~vnKG~al~~ll~--~~~~d~vl~~GD~~nDe~Mf~~~~ 691 (726)
T PRK14501 654 AGVNKGRAVRRLLE--AGPYDFVLAIGDDTTDEDMFRALP 691 (726)
T ss_pred CCCCHHHHHHHHHh--cCCCCEEEEECCCCChHHHHHhcc
Confidence 33445677888777 788999999999999999999874
No 188
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=97.04 E-value=0.0089 Score=46.40 Aligned_cols=93 Identities=20% Similarity=0.245 Sum_probs=55.5
Q ss_pred CCchHHHHHHHHHHCCCCEEEEeCCchHHH---HHHHHhhc-----CCccccceEEecCC-------CCCCCCChHHHHH
Q 021360 92 ALPGANRLIKHLSCHGVPMALASNSHRATI---ESKISYQH-----GWNESFSVIVGSDE-------VRTGKPSPDIFLE 156 (313)
Q Consensus 92 ~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~---~~~l~~~~-----~~~~~f~~v~~~~~-------~~~~kp~~~~~~~ 156 (313)
..||+.++++.+++.||++..+|..+.... +..| ... ++.. --++.+.+ -..-..+|+.|+.
T Consensus 28 ~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L-~~~~q~~~~lP~--Gpv~~sP~~l~~al~rEvi~~~p~~fK~ 104 (157)
T PF08235_consen 28 THPGAAELYRKIADNGYKILYLTARPIGQANRTRSWL-AQHQQQGHNLPD--GPVLLSPDSLFSALHREVISKDPEEFKI 104 (157)
T ss_pred hhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHH-HHHHhCCccCCC--CCEEECCcchhhhhhccccccChHHHHH
Confidence 456999999999999999999999875432 3344 322 2221 12222211 0111234555555
Q ss_pred HHH-Hc--CCCC-Cc--EEEEecCHhhHHHHHHcCCe
Q 021360 157 AAK-RL--NMEP-SS--SLVIEDSVIGVVAGKAAGME 187 (313)
Q Consensus 157 ~~~-~~--~~~~-~~--~i~vgD~~~Di~~a~~~G~~ 187 (313)
.+. .+ -+++ .. ...+|+..+|+.+=+++|++
T Consensus 105 ~~L~~l~~~f~~~~~pf~agfGN~~tDv~aY~~vGip 141 (157)
T PF08235_consen 105 ACLRDLRALFPPDGNPFYAGFGNRSTDVIAYKAVGIP 141 (157)
T ss_pred HHHHHHHHhcCCCCCeEEEecCCcHHHHHHHHHcCCC
Confidence 443 21 1221 22 34489999999999999986
No 189
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=97.02 E-value=0.0022 Score=64.41 Aligned_cols=98 Identities=14% Similarity=0.086 Sum_probs=73.3
Q ss_pred CCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCC----------------CCCCChHHH
Q 021360 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR----------------TGKPSPDIF 154 (313)
Q Consensus 91 ~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~----------------~~kp~~~~~ 154 (313)
++.|++.+.++.+++.|+++.++|+.......... +.+|+.. +.++.+.+.. ...-.|+.-
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA-~~lGI~~--~~vi~G~el~~~~~~el~~~v~~~~VfAr~sPe~K 626 (903)
T PRK15122 550 PPKESAAPAIAALRENGVAVKVLTGDNPIVTAKIC-REVGLEP--GEPLLGTEIEAMDDAALAREVEERTVFAKLTPLQK 626 (903)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCCC--CCccchHhhhhCCHHHHHHHhhhCCEEEEeCHHHH
Confidence 67899999999999999999999999888887766 8889852 2333333221 122345555
Q ss_pred HHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEe
Q 021360 155 LEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 191 (313)
Q Consensus 155 ~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v 191 (313)
.++.+.+.-.-+-+.|+||+.||..+.+.+.+.+.+-
T Consensus 627 ~~iV~~Lq~~G~vVamtGDGvNDaPALk~ADVGIAmg 663 (903)
T PRK15122 627 SRVLKALQANGHTVGFLGDGINDAPALRDADVGISVD 663 (903)
T ss_pred HHHHHHHHhCCCEEEEECCCchhHHHHHhCCEEEEeC
Confidence 6666665545567999999999999999999876554
No 190
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=96.99 E-value=0.032 Score=48.36 Aligned_cols=104 Identities=14% Similarity=0.244 Sum_probs=74.6
Q ss_pred CCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHh--hcCCccccceEEecCCCC-----CCCC-------------
Q 021360 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISY--QHGWNESFSVIVGSDEVR-----TGKP------------- 149 (313)
Q Consensus 90 ~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~--~~~~~~~f~~v~~~~~~~-----~~kp------------- 149 (313)
+.-.|....+++.|++.|.++.++||++-.++..-+.- .-.+.+.||+|++-.+-+ ..+|
T Consensus 239 i~r~~ql~~fl~kL~~~GKklFLiTNSPysFVd~GM~flvG~~WRdlFDVVIvqA~KP~Fftde~rPfR~~dek~~sl~w 318 (510)
T KOG2470|consen 239 IERNPQLLAFLRKLKDHGKKLFLITNSPYSFVDKGMRFLVGDDWRDLFDVVIVQANKPEFFTDERRPFRKYDEKRGSLLW 318 (510)
T ss_pred hhccHHHHHHHHHHHHhcCcEEEEeCCchhhhhcCceeeeCccHHhhhheeEEecCCCcccccccCcchhhcccccchhh
Confidence 34457888999999999999999999999998765521 123556788887643211 1111
Q ss_pred ---------C---hHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHH-HcCCeEEEeCC
Q 021360 150 ---------S---PDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGK-AAGMEVVAVPS 193 (313)
Q Consensus 150 ---------~---~~~~~~~~~~~~~~~~~~i~vgD~~-~Di~~a~-~~G~~~i~v~~ 193 (313)
+ ...+...++-.|..-.+++++||.. +|+.... +.|+++..+.+
T Consensus 319 dkv~klekgkiYy~G~l~~flelt~WrG~~VlYFGDHlySDLad~tlkhgWRTgAII~ 376 (510)
T KOG2470|consen 319 DKVDKLEKGKIYYQGNLKSFLELTGWRGPRVLYFGDHLYSDLADLTLKHGWRTGAIIP 376 (510)
T ss_pred hhhhhcccCceeeeccHHHHHHHhccCCCeeEEecCcchhhhhhhHhhcccccccchH
Confidence 0 1124555666678888999999999 7998876 99999877766
No 191
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=96.98 E-value=0.0025 Score=64.03 Aligned_cols=105 Identities=15% Similarity=0.122 Sum_probs=78.8
Q ss_pred cCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccc--eEEecCCCC----------------CCCCC
Q 021360 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS--VIVGSDEVR----------------TGKPS 150 (313)
Q Consensus 89 ~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~--~v~~~~~~~----------------~~kp~ 150 (313)
.-++.|++.+.++.+++.|+++.++|+-......... +..|+...-. .++.|.+.. ..+-.
T Consensus 545 ~Dppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa-~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~VfARvs 623 (917)
T COG0474 545 EDPPREDVKEAIEELREAGIKVWMITGDHVETAIAIA-KECGIEAEAESALVIDGAELDALSDEELAELVEELSVFARVS 623 (917)
T ss_pred cCCCCccHHHHHHHHHHCCCcEEEECCCCHHHHHHHH-HHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEEEEcC
Confidence 3578999999999999999999999999988887766 8888765442 355554322 22234
Q ss_pred hHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCCC
Q 021360 151 PDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL 194 (313)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~ 194 (313)
|+.-.++.+.+.-.-.-+.|.||+.||..|.++|.+.+.+...+
T Consensus 624 P~qK~~IV~~lq~~g~vVamtGDGvNDapALk~ADVGIamg~~G 667 (917)
T COG0474 624 PEQKARIVEALQKSGHVVAMTGDGVNDAPALKAADVGIAMGGEG 667 (917)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCchhHHHHHhcCccEEecccH
Confidence 55555555555545667899999999999999999988776543
No 192
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=96.80 E-value=0.005 Score=62.60 Aligned_cols=100 Identities=15% Similarity=0.118 Sum_probs=70.6
Q ss_pred CCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCcccc------------------------ceEEecCCCC-
Q 021360 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF------------------------SVIVGSDEVR- 145 (313)
Q Consensus 91 ~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f------------------------~~v~~~~~~~- 145 (313)
++.|++.+.++++++.|+++.++|+.....+.... +..|+...- ..++.|.+..
T Consensus 568 plr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia-~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~~l~~ 646 (997)
T TIGR01106 568 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIA-KGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKD 646 (997)
T ss_pred CChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCCCCCccchhhhhhhccccccccccccccceEEEhHHhhh
Confidence 67889999999999999999999999988887776 777773210 1244443221
Q ss_pred -----------------CCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEe
Q 021360 146 -----------------TGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 191 (313)
Q Consensus 146 -----------------~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v 191 (313)
..+-.|+.-.++.+.+.-...-+.|+||+.||..|.+.+.+.+.+-
T Consensus 647 l~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~~g~vv~~~GDG~ND~paLk~AdVGiamg 709 (997)
T TIGR01106 647 MTSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMG 709 (997)
T ss_pred CCHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCcccHHHHhhCCcceecC
Confidence 1223344444444444434456899999999999999999876553
No 193
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=96.76 E-value=0.018 Score=52.87 Aligned_cols=81 Identities=11% Similarity=0.011 Sum_probs=48.2
Q ss_pred HHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCC--------CC--CCCCChHH-HHHHHHHcCCCCCc
Q 021360 99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE--------VR--TGKPSPDI-FLEAAKRLNMEPSS 167 (313)
Q Consensus 99 ~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~--------~~--~~kp~~~~-~~~~~~~~~~~~~~ 167 (313)
.++.++..| +.+++|.+++.+++..+.+.+|. |.|++.+- .+ .++...+. ..++.+.++ +...
T Consensus 101 ~~~~~~~~g-~~vVVTAsPrvmVEpFake~LG~----D~VvGTEL~v~~~G~~TG~~~G~n~~ek~~~rl~~~~g-~~~~ 174 (498)
T PLN02499 101 AWKVFSSCD-KRVVVTRMPRVMVERFAKEHLRA----DEVIGSELVVNRFGFATGFIRGTDVDQSVANRVANLFV-DERP 174 (498)
T ss_pred HHHHHHcCC-eEEEEeCCHHHHHHHHHHHhcCC----ceEEeeeEEEeeccEEEEEEecCccHHHHHHHHHHHhC-ccCc
Confidence 455667777 89999999999999999666888 55543321 00 11111222 333333344 3344
Q ss_pred EEEEecCHhhHHHHHHcC
Q 021360 168 SLVIEDSVIGVVAGKAAG 185 (313)
Q Consensus 168 ~i~vgD~~~Di~~a~~~G 185 (313)
.+-+||+..|..-..-+.
T Consensus 175 ~vg~~~~~~~~~f~~~ck 192 (498)
T PLN02499 175 QLGLGRISASSSFLSLCK 192 (498)
T ss_pred eecccCCcccchhhhhCc
Confidence 677788776665554443
No 194
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=96.44 E-value=0.029 Score=47.83 Aligned_cols=53 Identities=26% Similarity=0.448 Sum_probs=40.3
Q ss_pred CCCchHHHHHHHHHHCCCCEEEEeCCchHH---HHHHHHhhcCCccccceEEecCC
Q 021360 91 KALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNESFSVIVGSDE 143 (313)
Q Consensus 91 ~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~---~~~~l~~~~~~~~~f~~v~~~~~ 143 (313)
.++||+.++|+.|+++|.++.++||++... ....|....++....+.++++..
T Consensus 24 ~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~TS~~ 79 (269)
T COG0647 24 EAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVTSGD 79 (269)
T ss_pred ccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHeecHHH
Confidence 688999999999999999999999996543 34455233566666677777653
No 195
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=96.44 E-value=0.018 Score=56.04 Aligned_cols=91 Identities=15% Similarity=0.163 Sum_probs=68.2
Q ss_pred CCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcEE
Q 021360 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (313)
Q Consensus 90 ~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i 169 (313)
-++.|++...+..|++.|++++++|+......+... +..|+ +.|++. -+| +.-.+..+++.-+...+.
T Consensus 722 D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA-~~VGi----~~V~ae-----v~P--~~K~~~Ik~lq~~~~~Va 789 (951)
T KOG0207|consen 722 DQVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVA-QQVGI----DNVYAE-----VLP--EQKAEKIKEIQKNGGPVA 789 (951)
T ss_pred cccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHH-HhhCc----ceEEec-----cCc--hhhHHHHHHHHhcCCcEE
Confidence 478899999999999999999999999998888777 77885 666542 222 222333334444447899
Q ss_pred EEecCHhhHHHHHHcCCeEEEeC
Q 021360 170 VIEDSVIGVVAGKAAGMEVVAVP 192 (313)
Q Consensus 170 ~vgD~~~Di~~a~~~G~~~i~v~ 192 (313)
|+||+.||-.+...+.+......
T Consensus 790 MVGDGINDaPALA~AdVGIaig~ 812 (951)
T KOG0207|consen 790 MVGDGINDAPALAQADVGIAIGA 812 (951)
T ss_pred EEeCCCCccHHHHhhccceeecc
Confidence 99999999999888877654443
No 196
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=96.41 E-value=0.033 Score=55.52 Aligned_cols=39 Identities=15% Similarity=-0.011 Sum_probs=31.3
Q ss_pred CCCChHHHHHHHH---HcCCCCCcEEEEecCHhhHHHHHHcC
Q 021360 147 GKPSPDIFLEAAK---RLNMEPSSSLVIEDSVIGVVAGKAAG 185 (313)
Q Consensus 147 ~kp~~~~~~~~~~---~~~~~~~~~i~vgD~~~Di~~a~~~G 185 (313)
+-.|...++.+++ .+|.+++.+++|||..+|..|.+.++
T Consensus 760 gvnKG~Al~~Ll~~~~~~g~~~d~vl~~GDD~nDedMF~~~~ 801 (854)
T PLN02205 760 GVSKGLVAKRLLSIMQERGMLPDFVLCIGDDRSDEDMFEVIT 801 (854)
T ss_pred CCCHHHHHHHHHHHHHhcCCCcccEEEEcCCccHHHHHHHhh
Confidence 3445567777764 46899999999999999999988876
No 197
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=96.27 E-value=0.025 Score=53.22 Aligned_cols=86 Identities=15% Similarity=0.120 Sum_probs=65.2
Q ss_pred CCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcEE
Q 021360 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (313)
Q Consensus 90 ~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i 169 (313)
-++.|++.+.++.|++.|+++.++|+.......... +.+|+ + ..-.|+.-.++.+++.-....+.
T Consensus 346 d~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia-~~lgi-------~-------~~~~p~~K~~~v~~l~~~g~~v~ 410 (499)
T TIGR01494 346 DPLRDDAKETISELREAGIRVIMLTGDNVLTAKAIA-KELGI-------F-------ARVTPEEKAALVEALQKKGRVVA 410 (499)
T ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCc-------e-------eccCHHHHHHHHHHHHHCCCEEE
Confidence 378899999999999999999999999888877666 77775 1 11234444455554433447799
Q ss_pred EEecCHhhHHHHHHcCCeEEE
Q 021360 170 VIEDSVIGVVAGKAAGMEVVA 190 (313)
Q Consensus 170 ~vgD~~~Di~~a~~~G~~~i~ 190 (313)
++||+.||..+.+.+++.+.+
T Consensus 411 ~vGDg~nD~~al~~Advgia~ 431 (499)
T TIGR01494 411 MTGDGVNDAPALKKADVGIAM 431 (499)
T ss_pred EECCChhhHHHHHhCCCcccc
Confidence 999999999999999876444
No 198
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.17 E-value=0.018 Score=51.71 Aligned_cols=98 Identities=17% Similarity=0.126 Sum_probs=81.0
Q ss_pred CchHHHHHHHHHHCCCCEEEEeCC--chHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEE
Q 021360 93 LPGANRLIKHLSCHGVPMALASNS--HRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (313)
Q Consensus 93 ~pgv~e~l~~l~~~g~~~~i~s~~--~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~ 170 (313)
.....++.+.+.+.+.+++++|.- |...++..| ...|.+-+---++.+.+....|-+...|..++..-++++.+.++
T Consensus 101 n~~~~eL~e~ai~n~krVIlISDMYlps~Il~~~L-~s~g~d~~nipiY~S~e~rl~KnSg~LFk~Vlk~EnVd~~~w~H 179 (635)
T COG5610 101 NKKNIELVEEAIKNEKRVILISDMYLPSSILRTFL-NSFGPDFNNIPIYMSSEFRLKKNSGNLFKAVLKLENVDPKKWIH 179 (635)
T ss_pred cccchHHHHHHHhCCCeEEEEecccCcHHHHHHHH-HhcCCCccCceeeecceeehhcccchHHHHHHhhcCCChhheEE
Confidence 345678899999999999999976 566677777 66776544445778888888888899999999999999999999
Q ss_pred EecCH-hhHHHHHHcCCeEEEe
Q 021360 171 IEDSV-IGVVAGKAAGMEVVAV 191 (313)
Q Consensus 171 vgD~~-~Di~~a~~~G~~~i~v 191 (313)
+||+. .|+.++++.|+.+...
T Consensus 180 ~GDN~~aD~l~pk~LgI~Tlf~ 201 (635)
T COG5610 180 CGDNWVADYLKPKNLGISTLFY 201 (635)
T ss_pred ecCchhhhhcCccccchhHHHH
Confidence 99999 6999999999976544
No 199
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=96.14 E-value=0.019 Score=55.44 Aligned_cols=104 Identities=15% Similarity=0.109 Sum_probs=76.6
Q ss_pred CCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccc----eEEecCCCC----------------CCCC
Q 021360 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS----VIVGSDEVR----------------TGKP 149 (313)
Q Consensus 90 ~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~----~v~~~~~~~----------------~~kp 149 (313)
-+|+|++.+.++.+++.|+++.++|+.......... ++.|+...-+ ..+++.++. ...-
T Consensus 583 DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~-r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~vFaR~ 661 (972)
T KOG0202|consen 583 DPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIA-REIGIFSEDEDVSSMALTGSEFDDLSDEELDDAVRRVLVFARA 661 (972)
T ss_pred CCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHH-HHhCCCcCCccccccccchhhhhcCCHHHHHHHhhcceEEEec
Confidence 478999999999999999999999999999888777 7788754433 344443322 1112
Q ss_pred ChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCCC
Q 021360 150 SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL 194 (313)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~ 194 (313)
.|.--.++.+.+.-..+=+.|-||+.||-.+.+.+.+.+.+-..+
T Consensus 662 ~P~HK~kIVeaLq~~geivAMTGDGVNDApALK~AdIGIAMG~~G 706 (972)
T KOG0202|consen 662 EPQHKLKIVEALQSRGEVVAMTGDGVNDAPALKKADIGIAMGISG 706 (972)
T ss_pred CchhHHHHHHHHHhcCCEEEecCCCccchhhhhhcccceeecCCc
Confidence 344455566666556677889999999999999999876665443
No 200
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=96.03 E-value=0.011 Score=49.93 Aligned_cols=62 Identities=15% Similarity=0.034 Sum_probs=46.8
Q ss_pred CChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHc-------CCeEEEeCCCCCccccccccceeecccccc
Q 021360 149 PSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA-------GMEVVAVPSLPKQTHRYTAADEVINSLLDL 214 (313)
Q Consensus 149 p~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~-------G~~~i~v~~~~~~~~~~~~s~~ii~~l~e~ 214 (313)
.+...++.+++++++++++++++||+.+|+.+++.+ |...+.+..+ .....+++++++..+.
T Consensus 167 ~Kg~a~~~~~~~~~~~~~~~i~iGD~~~D~~~~~~~~~~~~~~g~~~v~v~~g----~~~~~A~~~~~~~~~v 235 (244)
T TIGR00685 167 NKGEIVKRLLWHQPGSGISPVYLGDDITDEDAFRVVNNQWGNYGFYPVPIGSG----SKKTVAKFHLTGPQQV 235 (244)
T ss_pred CHHHHHHHHHHhcccCCCceEEEcCCCcHHHHHHHHhcccCCCCeEEEEEecC----CcCCCceEeCCCHHHH
Confidence 345899999999999999999999999999999988 5556666432 1223466777766553
No 201
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.00 E-value=0.091 Score=42.95 Aligned_cols=41 Identities=20% Similarity=0.181 Sum_probs=32.9
Q ss_pred cCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCC
Q 021360 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW 131 (313)
Q Consensus 89 ~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~ 131 (313)
...+.||+.+.++.+.+. .+-+++|.+..+++++.. ...|+
T Consensus 81 sa~lvPgA~etm~~l~~~-~tp~v~STSY~qy~~r~a-~~ig~ 121 (315)
T COG4030 81 SAKLVPGAEETMATLQER-WTPVVISTSYTQYLRRTA-SMIGV 121 (315)
T ss_pred hcccCCChHHHHHHHhcc-CCceEEeccHHHHHHHHH-HhcCC
Confidence 367899999999999887 777888888888887665 55555
No 202
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=95.97 E-value=0.072 Score=54.78 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=36.6
Q ss_pred CCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCc
Q 021360 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (313)
Q Consensus 90 ~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~ 132 (313)
-++.|++.+.++.|++.|+++.++|+.....+.... +..|+.
T Consensus 655 d~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA-~~~gii 696 (1054)
T TIGR01657 655 NPLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVA-RECGIV 696 (1054)
T ss_pred cCCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCC
Confidence 368899999999999999999999999888887766 777874
No 203
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=95.97 E-value=0.069 Score=46.18 Aligned_cols=88 Identities=19% Similarity=0.226 Sum_probs=58.9
Q ss_pred CCCchHHHHHHHHHHCCCCEEEEeCCchH---HHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCc
Q 021360 91 KALPGANRLIKHLSCHGVPMALASNSHRA---TIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167 (313)
Q Consensus 91 ~~~pgv~e~l~~l~~~g~~~~i~s~~~~~---~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 167 (313)
.++|++.++|++|++.|.+++++||++.. .....+ +++|+....+.++++. .....++++......+
T Consensus 18 ~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l-~~~G~~~~~~~i~ts~---------~~~~~~l~~~~~~~~~ 87 (279)
T TIGR01452 18 RVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKF-ARLGFNGLAEQLFSSA---------LCAARLLRQPPDAPKA 87 (279)
T ss_pred eeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH-HHcCCCCChhhEecHH---------HHHHHHHHhhCcCCCE
Confidence 46789999999999999999999986532 223345 6677754444444432 3444555554445678
Q ss_pred EEEEecCHhhHHHHHHcCCeEE
Q 021360 168 SLVIEDSVIGVVAGKAAGMEVV 189 (313)
Q Consensus 168 ~i~vgD~~~Di~~a~~~G~~~i 189 (313)
++++|+. .-....+.+|+..+
T Consensus 88 v~~iG~~-~~~~~l~~~g~~~~ 108 (279)
T TIGR01452 88 VYVIGEE-GLRAELDAAGIRLA 108 (279)
T ss_pred EEEEcCH-HHHHHHHHCCCEEe
Confidence 9999985 33455677888754
No 204
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=95.58 E-value=0.038 Score=47.42 Aligned_cols=41 Identities=7% Similarity=0.114 Sum_probs=33.6
Q ss_pred ChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHc----CCeEEE
Q 021360 150 SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA----GMEVVA 190 (313)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~----G~~~i~ 190 (313)
+...++++++.++++.++++++||+.||..|.+.+ |+.+.+
T Consensus 175 Kg~al~~ll~~~~~~~~~v~~~GD~~nD~~mf~~~~~~~g~~vav 219 (266)
T PRK10187 175 KGEAIAAFMQEAPFAGRTPVFVGDDLTDEAGFAVVNRLGGISVKV 219 (266)
T ss_pred HHHHHHHHHHhcCCCCCeEEEEcCCccHHHHHHHHHhcCCeEEEE
Confidence 45667888888899999999999999999999888 655433
No 205
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=95.48 E-value=0.16 Score=41.44 Aligned_cols=26 Identities=8% Similarity=-0.001 Sum_probs=20.0
Q ss_pred CCCc-EEEEecCHhhHHHHHHcCCeEE
Q 021360 164 EPSS-SLVIEDSVIGVVAGKAAGMEVV 189 (313)
Q Consensus 164 ~~~~-~i~vgD~~~Di~~a~~~G~~~i 189 (313)
...+ ++.+||++||+.+.......++
T Consensus 207 ~~~r~t~~~GDg~nD~Pl~ev~d~Afi 233 (274)
T COG3769 207 GGARTTLGLGDGPNDAPLLEVMDYAFI 233 (274)
T ss_pred CceeEEEecCCCCCcccHHHhhhhhee
Confidence 4444 7889999999999887766443
No 206
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=95.47 E-value=0.16 Score=38.83 Aligned_cols=101 Identities=15% Similarity=0.102 Sum_probs=61.2
Q ss_pred CCCCchHHHHHHHHHHC-C-CCEEEEeCCch------HH-HHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHH
Q 021360 90 VKALPGANRLIKHLSCH-G-VPMALASNSHR------AT-IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKR 160 (313)
Q Consensus 90 ~~~~pgv~e~l~~l~~~-g-~~~~i~s~~~~------~~-~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~ 160 (313)
....|....-+++++.. | ..++++||+.- +. ....++.+.|+ ..+ .....++-...+.+......
T Consensus 60 ~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gI----pVl--RHs~kKP~ct~E~~~y~~~N 133 (190)
T KOG2961|consen 60 LAIWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGI----PVL--RHSVKKPACTAEEVEYHFGN 133 (190)
T ss_pred cccCchhHHHHHHHHHHhCcccEEEEecCcCccccCCchHHHHHHHHhhCC----ceE--eecccCCCccHHHHHHHhCC
Confidence 45566666667777653 3 67888888732 11 22233455555 222 22222222233444443221
Q ss_pred cC-CCCCcEEEEecCH-hhHHHHHHcCCeEEEeCCCCC
Q 021360 161 LN-MEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPK 196 (313)
Q Consensus 161 ~~-~~~~~~i~vgD~~-~Di~~a~~~G~~~i~v~~~~~ 196 (313)
-. ..+++++||||.. .||.+|...|.-.++..++..
T Consensus 134 shv~~~se~~~vGDRlfTDI~~aN~mGs~gVw~~~gv~ 171 (190)
T KOG2961|consen 134 SHVCTSSELIMVGDRLFTDIVYANRMGSLGVWTEPGVR 171 (190)
T ss_pred cccCChhHeEEEccchhhhHhhhhhccceeEEeccccc
Confidence 11 5789999999999 599999999999999988644
No 207
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=94.80 E-value=0.097 Score=53.90 Aligned_cols=122 Identities=16% Similarity=0.147 Sum_probs=73.7
Q ss_pred CCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCcccc----------------------------------
Q 021360 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF---------------------------------- 135 (313)
Q Consensus 90 ~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f---------------------------------- 135 (313)
-++.|++.+.++.|++.|++++++|+...+.+.... ...|+...-
T Consensus 630 D~lq~~v~etI~~L~~AGIkv~mlTGD~~~TA~~IA-~~~~ii~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 708 (1057)
T TIGR01652 630 DKLQEGVPETIELLRQAGIKIWVLTGDKVETAINIG-YSCRLLSRNMEQIVITSESLDATRSVEAAIKFGLEGTSEEFNN 708 (1057)
T ss_pred hhhhhccHHHHHHHHHCCCeEEEEcCCcHHHHHHHH-HHhCCCCCCCeEEEEecCchhhhHHHHHHHHHHHHHHHHhhhh
Confidence 478899999999999999999999988777766554 444442210
Q ss_pred -------ceEEecCCCC----------------------CCCCChHHHHHHHHHcCCC-CCcEEEEecCHhhHHHHHHcC
Q 021360 136 -------SVIVGSDEVR----------------------TGKPSPDIFLEAAKRLNME-PSSSLVIEDSVIGVVAGKAAG 185 (313)
Q Consensus 136 -------~~v~~~~~~~----------------------~~kp~~~~~~~~~~~~~~~-~~~~i~vgD~~~Di~~a~~~G 185 (313)
..++.+.... ..+-.|+.-.++.+.+.-. ...+.++||+.||+.|.++|.
T Consensus 709 ~~~~~~~~lvi~G~~l~~~l~~~~~~~f~~l~~~~~~vV~aR~sP~qK~~IV~~lk~~~~~~vl~iGDG~ND~~mlk~Ad 788 (1057)
T TIGR01652 709 LGDSGNVALVIDGKSLGYALDEELEKEFLQLALKCKAVICCRVSPSQKADVVRLVKKSTGKTTLAIGDGANDVSMIQEAD 788 (1057)
T ss_pred hccCCceEEEEccHHHHHHHhhHHHHHHHHHHhhCCEEEEeCCCHHHHHHHHHHHHhcCCCeEEEEeCCCccHHHHhhcC
Confidence 1133332111 1111222222233322222 467999999999999999999
Q ss_pred CeEEEeCCCCCccccccccceeecccccc
Q 021360 186 MEVVAVPSLPKQTHRYTAADEVINSLLDL 214 (313)
Q Consensus 186 ~~~i~v~~~~~~~~~~~~s~~ii~~l~e~ 214 (313)
+.+ .+.. .........||.++.++..+
T Consensus 789 VGI-gi~g-~eg~qA~~aaD~~i~~F~~L 815 (1057)
T TIGR01652 789 VGV-GISG-KEGMQAVMASDFAIGQFRFL 815 (1057)
T ss_pred eee-EecC-hHHHHHHHhhhhhhhhHHHH
Confidence 876 3322 11111234677777765443
No 208
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=94.80 E-value=0.03 Score=42.00 Aligned_cols=137 Identities=12% Similarity=0.208 Sum_probs=74.4
Q ss_pred CccEEEEecCCccccChHHHHHHHHHHHHHcCCCCChhhhhhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh--
Q 021360 8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD-- 85 (313)
Q Consensus 8 ~~k~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 85 (313)
+.|.++.|||-||.|....|...+. +.+..+++.+. ..|... +.+-.+ ... .+.+...+
T Consensus 2 ~kk~iaIDmD~vLadll~ewv~~~N-~y~D~~lk~~d-----i~gwdi--------k~yv~~--~~g---~i~~il~ep~ 62 (180)
T COG4502 2 NKKTIAIDMDTVLADLLREWVKRYN-IYKDKLLKMSD-----IKGWDI--------KNYVKP--ECG---KIYDILKEPH 62 (180)
T ss_pred CCceEEeeHHHHHHHHHHHHHHHhh-hccccCcChHh-----hcccch--------hhccCc--cCC---eeeeeccCcc
Confidence 4578999999999987766655443 33333333211 111111 111000 000 01111111
Q ss_pred hhccCCCCchHHHHHHHHHHCCCCEEEEeCC--chHHHHH---HHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHH
Q 021360 86 HLCKVKALPGANRLIKHLSCHGVPMALASNS--HRATIES---KISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKR 160 (313)
Q Consensus 86 ~~~~~~~~pgv~e~l~~l~~~g~~~~i~s~~--~~~~~~~---~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~ 160 (313)
.+..+.+.|++.+.+++|.+. +.++++|.. .....+. .+.+.+.+.++-..|+|+..-
T Consensus 63 fFRnL~V~p~aq~v~keLt~~-y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~qn~vfCgnKn---------------- 125 (180)
T COG4502 63 FFRNLGVQPFAQTVLKELTSI-YNVYIVTAAMDHPKSCEDKGEWLKEKFPFISYQNIVFCGNKN---------------- 125 (180)
T ss_pred hhhhcCccccHHHHHHHHHhh-heEEEEEeccCCchhHHHHHHHHHHHCCCCChhhEEEecCCC----------------
Confidence 235678899999999999987 899998866 2222221 233666666666677776321
Q ss_pred cCCCCCcEEEEecCHhhHHHHHH
Q 021360 161 LNMEPSSSLVIEDSVIGVVAGKA 183 (313)
Q Consensus 161 ~~~~~~~~i~vgD~~~Di~~a~~ 183 (313)
+ ...=++|+|++..++..+.
T Consensus 126 --i-vkaDilIDDnp~nLE~F~G 145 (180)
T COG4502 126 --I-VKADILIDDNPLNLENFKG 145 (180)
T ss_pred --e-EEeeEEecCCchhhhhccC
Confidence 0 0112677888877766543
No 209
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=94.67 E-value=0.15 Score=45.15 Aligned_cols=95 Identities=16% Similarity=0.225 Sum_probs=57.8
Q ss_pred CCCchHHHHHHHHHHCCCCEEEEeCCch------------HHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHH
Q 021360 91 KALPGANRLIKHLSCHGVPMALASNSHR------------ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAA 158 (313)
Q Consensus 91 ~~~pgv~e~l~~l~~~g~~~~i~s~~~~------------~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~ 158 (313)
.++|.+..=|+.+.+.|+.+++.||... ..++... ..+++ .|........-..+||...++....
T Consensus 104 ~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~~~f~~Ki~~i~-anl~v--Pi~~~~A~~~~~yRKP~tGMwe~~~ 180 (422)
T KOG2134|consen 104 ILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLELEEFKKKIKAIV-ANLGV--PIQLLAAIIKGKYRKPSTGMWEFLK 180 (422)
T ss_pred eeccccchhhhhhccCCeEEEEEecccccccCcchHHHHHHHHHHHH-HhcCC--ceEEeeeccCCcccCcchhHHHHHH
Confidence 3555666778889999999999987642 1123333 33444 2233333233348899988887776
Q ss_pred HHcC----CCCCcEEEEecC---------------HhhHHHHHHcCCeE
Q 021360 159 KRLN----MEPSSSLVIEDS---------------VIGVVAGKAAGMEV 188 (313)
Q Consensus 159 ~~~~----~~~~~~i~vgD~---------------~~Di~~a~~~G~~~ 188 (313)
+..+ +.-..++++||- ..|+..|.++|+..
T Consensus 181 ~~~nd~~~Isek~s~fvgdaagr~~~~~~~kkd~S~~D~~FAaN~gvkF 229 (422)
T KOG2134|consen 181 RLENDSVEISEKASIFVGDAAGRPLDALRRKKDHSSADRKFAANAGVKF 229 (422)
T ss_pred HHhhccceeeechhhhhhhhccCccccccCcccccHHHHHHHHhcCCcc
Confidence 5443 333445566652 24777788888764
No 210
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=94.63 E-value=0.041 Score=47.22 Aligned_cols=14 Identities=43% Similarity=0.586 Sum_probs=12.2
Q ss_pred cEEEEecCCccccC
Q 021360 10 SCVILDLDGTLLNT 23 (313)
Q Consensus 10 k~vifDlDGTL~d~ 23 (313)
.+|+||+||||++.
T Consensus 15 ~li~~D~DGTLl~~ 28 (266)
T PRK10187 15 YAWFFDLDGTLAEI 28 (266)
T ss_pred EEEEEecCCCCCCC
Confidence 57899999999973
No 211
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=94.21 E-value=0.18 Score=49.13 Aligned_cols=116 Identities=16% Similarity=0.115 Sum_probs=71.6
Q ss_pred CCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccc--eEEecCCCC----------------CCCCCh
Q 021360 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS--VIVGSDEVR----------------TGKPSP 151 (313)
Q Consensus 90 ~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~--~v~~~~~~~----------------~~kp~~ 151 (313)
-+.+||+.+.++.++..|+++-.+|+.+....++.. ...|+...=+ .+.-+.++. .....|
T Consensus 646 DPvRPgV~~AV~~Cq~AGItVRMVTGDNI~TAkAIA-~eCGILt~~~d~~~lEG~eFr~~s~ee~~~i~pkl~VlARSSP 724 (1034)
T KOG0204|consen 646 DPVRPGVPEAVQLCQRAGITVRMVTGDNINTAKAIA-RECGILTPGGDFLALEGKEFRELSQEERDKIWPKLRVLARSSP 724 (1034)
T ss_pred CCCCCCcHHHHHHHHHcCcEEEEEeCCcHHHHHHHH-HHcccccCCCccceecchhhhhcCHHHHHhhhhhheeeecCCC
Confidence 367899999999999999999999999988888766 6677654322 223332221 111122
Q ss_pred HHHHHHHHHcCCCCCcEEE-EecCHhhHHHHHHcCCeEEEeCCCCCccccccccceeec
Q 021360 152 DIFLEAAKRLNMEPSSSLV-IEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVIN 209 (313)
Q Consensus 152 ~~~~~~~~~~~~~~~~~i~-vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~ 209 (313)
..-.-+.+.+. .-.+++. -||+.||-.+.++|.+...+--.+.+-. +..||.++-
T Consensus 725 ~DK~lLVk~L~-~~g~VVAVTGDGTNDaPALkeADVGlAMGIaGTeVA--KEaSDIIi~ 780 (1034)
T KOG0204|consen 725 NDKHLLVKGLI-KQGEVVAVTGDGTNDAPALKEADVGLAMGIAGTEVA--KEASDIIIL 780 (1034)
T ss_pred chHHHHHHHHH-hcCcEEEEecCCCCCchhhhhcccchhccccchhhh--hhhCCeEEE
Confidence 11111222221 3345554 5999999999999998665544433222 235555543
No 212
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=94.21 E-value=0.017 Score=50.14 Aligned_cols=35 Identities=17% Similarity=0.145 Sum_probs=25.4
Q ss_pred HcCCeEEEeCCCCCccccccccceeeccccccCccc
Q 021360 183 AAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEK 218 (313)
Q Consensus 183 ~~G~~~i~v~~~~~~~~~~~~s~~ii~~l~e~~~~~ 218 (313)
+.|+.+..+++... .....+|+.|++.|.+|+++.
T Consensus 250 ~~gf~v~~v~~~~~-~g~~ISST~IR~~l~~G~v~~ 284 (297)
T cd02169 250 SPAIEVIEIERKKY-DGQPISASTVRQLLKEGNLEE 284 (297)
T ss_pred cCCCEEEEeccccc-CCcEEcHHHHHHHHHcCCHHH
Confidence 34555777776433 444568899999999999888
No 213
>PLN03190 aminophospholipid translocase; Provisional
Probab=93.68 E-value=0.17 Score=52.38 Aligned_cols=49 Identities=20% Similarity=0.210 Sum_probs=35.1
Q ss_pred CcEEEEecCHhhHHHHHHcCCeEEEeCCCCCccccccccceeeccccccCc
Q 021360 166 SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRP 216 (313)
Q Consensus 166 ~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~s~~ii~~l~e~~~ 216 (313)
.-++++||+.||+.|.++|.+.+ .+.. .+.......||..+..+..+..
T Consensus 872 ~vtlaIGDGaNDv~mIq~AdVGI-GIsG-~EG~qA~~aSDfaI~~Fr~L~r 920 (1178)
T PLN03190 872 DMTLAIGDGANDVSMIQMADVGV-GISG-QEGRQAVMASDFAMGQFRFLVP 920 (1178)
T ss_pred cEEEEECCCcchHHHHHhcCeee-eecC-chhHHHHHhhccchhhhHHHHH
Confidence 45899999999999999998876 4332 2222234578888888776543
No 214
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=93.55 E-value=0.47 Score=39.82 Aligned_cols=94 Identities=17% Similarity=0.180 Sum_probs=53.0
Q ss_pred ccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEe------------cCCCC----CCCCCh
Q 021360 88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVG------------SDEVR----TGKPSP 151 (313)
Q Consensus 88 ~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~------------~~~~~----~~kp~~ 151 (313)
....+++|+.++++.|.+.++|+.++|.+-.+.++..+ ++.+....--.|++ ++.-. ..|. .
T Consensus 87 s~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL-~q~~~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~~NKn-~ 164 (246)
T PF05822_consen 87 SDIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVL-RQAGVFHPNVKVVSNFMDFDEDGVLVGFKGPLIHTFNKN-E 164 (246)
T ss_dssp S---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHH-HHTT--BTTEEEEEE-EEE-TTSBEEEE-SS---TT-HH-H
T ss_pred cchhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHH-HHcCCCCCCeEEEeeeEEECCcceEeecCCCceEEeeCC-c
Confidence 35789999999999999999999999999999999888 44454322112222 11100 1111 1
Q ss_pred HHHH--HHHHHcCCCCCcEEEEecCHhhHHHHHHc
Q 021360 152 DIFL--EAAKRLNMEPSSSLVIEDSVIGVVAGKAA 184 (313)
Q Consensus 152 ~~~~--~~~~~~~~~~~~~i~vgD~~~Di~~a~~~ 184 (313)
..+. ...+++ -...+++..||+..|+.|+..+
T Consensus 165 ~~l~~~~~~~~~-~~R~NvlLlGDslgD~~Ma~G~ 198 (246)
T PF05822_consen 165 SALEDSPYFKQL-KKRTNVLLLGDSLGDLHMADGV 198 (246)
T ss_dssp HHHTTHHHHHCT-TT--EEEEEESSSGGGGTTTT-
T ss_pred ccccCchHHHHh-ccCCcEEEecCccCChHhhcCC
Confidence 1111 111121 2346799999999999998776
No 215
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=93.28 E-value=0.89 Score=38.55 Aligned_cols=49 Identities=10% Similarity=0.308 Sum_probs=37.7
Q ss_pred CCchHHHHHHHHHHCCCCEEEEeCC---chHHHHHHHHhhcCCccccceEEec
Q 021360 92 ALPGANRLIKHLSCHGVPMALASNS---HRATIESKISYQHGWNESFSVIVGS 141 (313)
Q Consensus 92 ~~pgv~e~l~~l~~~g~~~~i~s~~---~~~~~~~~l~~~~~~~~~f~~v~~~ 141 (313)
+.|++.++|++|++.|.+++++||+ +...+...+ +.+|+....+.++++
T Consensus 18 ~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l-~~~g~~~~~~~iit~ 69 (249)
T TIGR01457 18 RIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEML-ASFDIPATLETVFTA 69 (249)
T ss_pred eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH-HHcCCCCChhhEeeH
Confidence 4568999999999999999999983 355555566 668887666666665
No 216
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=93.10 E-value=0.19 Score=43.24 Aligned_cols=101 Identities=12% Similarity=0.067 Sum_probs=54.4
Q ss_pred cEEEEecCCccccChHHHHH---HHHHHHHHcC-CCCChhhhhhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 021360 10 SCVILDLDGTLLNTDGMFSE---VLKTFLVKYG-KEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD 85 (313)
Q Consensus 10 k~vifDlDGTL~d~~~~~~~---~~~~~~~~~g-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (313)
=+++||+||+|+.....+.. +++.+...-| ..++.....+-.|.....-.+++...++...+.+++.+..
T Consensus 36 fgfafDIDGVL~RG~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~Vs~dqviqSH------ 109 (389)
T KOG1618|consen 36 FGFAFDIDGVLFRGHRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVEVSADQVIQSH------ 109 (389)
T ss_pred eeEEEecccEEEecCCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCccCHHHHHhhc------
Confidence 35899999999987554433 3333333322 1233223333334455555667777778777666654322
Q ss_pred hhccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCC
Q 021360 86 HLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW 131 (313)
Q Consensus 86 ~~~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~ 131 (313)
.+ ++.|.+..++.+++.+... ++... +.+|+
T Consensus 110 ----sP--------~r~l~~~~~k~vLv~G~~~--vr~vA-egyGF 140 (389)
T KOG1618|consen 110 ----SP--------FRLLVEYHYKRVLVVGQGS--VREVA-EGYGF 140 (389)
T ss_pred ----Ch--------HHHHhhhhhceEEEecCCc--HHHHh-hccCc
Confidence 11 2233344456666666443 34445 66776
No 217
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=92.94 E-value=0.29 Score=45.09 Aligned_cols=89 Identities=15% Similarity=0.147 Sum_probs=67.1
Q ss_pred CCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEE
Q 021360 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (313)
Q Consensus 91 ~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~ 170 (313)
...||++|.+.+|++.|++-+.+|+.++-...... ...|++++ + ...+|+.-.++.++..-+-+=+.|
T Consensus 447 ivK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA-~EAGVDdf----i-------AeatPEdK~~~I~~eQ~~grlVAM 514 (681)
T COG2216 447 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIA-AEAGVDDF----I-------AEATPEDKLALIRQEQAEGRLVAM 514 (681)
T ss_pred hcchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHH-HHhCchhh----h-------hcCChHHHHHHHHHHHhcCcEEEE
Confidence 35699999999999999999999988877665555 67788432 2 223345556666666666677889
Q ss_pred EecCHhhHHHHHHcCCeEEEe
Q 021360 171 IEDSVIGVVAGKAAGMEVVAV 191 (313)
Q Consensus 171 vgD~~~Di~~a~~~G~~~i~v 191 (313)
.||+.||-.+..++...+.+-
T Consensus 515 tGDGTNDAPALAqAdVg~AMN 535 (681)
T COG2216 515 TGDGTNDAPALAQADVGVAMN 535 (681)
T ss_pred cCCCCCcchhhhhcchhhhhc
Confidence 999999999999998865443
No 218
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=92.82 E-value=0.81 Score=38.10 Aligned_cols=62 Identities=15% Similarity=0.050 Sum_probs=48.9
Q ss_pred cCCccccc--eEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCCC
Q 021360 129 HGWNESFS--VIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL 194 (313)
Q Consensus 129 ~~~~~~f~--~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~ 194 (313)
+++...|. -|+++ ...++...|+++.+++|-+...-++|||+...-.+|+..+++++-+...
T Consensus 196 y~L~~~f~ieNIYSa----~kvGK~~cFe~I~~Rfg~p~~~f~~IGDG~eEe~aAk~l~wPFw~I~~h 259 (274)
T TIGR01658 196 FRLDTIFRIENVYSS----IKVGKLQCFKWIKERFGHPKVRFCAIGDGWEECTAAQAMNWPFVKIDLH 259 (274)
T ss_pred hccCCccccccccch----hhcchHHHHHHHHHHhCCCCceEEEeCCChhHHHHHHhcCCCeEEeecC
Confidence 56644443 34433 2345668999999999988889999999999999999999999988773
No 219
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=92.81 E-value=0.11 Score=41.80 Aligned_cols=75 Identities=16% Similarity=0.004 Sum_probs=51.9
Q ss_pred eCCchHHHHHHHHhhcCCccccceEEecCCCC---CCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEE
Q 021360 114 SNSHRATIESKISYQHGWNESFSVIVGSDEVR---TGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVA 190 (313)
Q Consensus 114 s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~---~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~ 190 (313)
..++++|++. +.+.+++ ..+++|+|+. .+.++.+.++.. ...+++ +..
T Consensus 92 ~lsa~~Fi~~-L~~~l~~----~~ivvG~df~FG~~~~G~~~~L~~~-~~~g~~-----------------------v~~ 142 (182)
T smart00764 92 TLDLRIFRKY-IAPALGI----THRYVGEEPFSPVTAIYNQTMKQTL-LSPAIE-----------------------VVE 142 (182)
T ss_pred cCCHHHHHHH-HHHHcCc----eEEEEcCCCCCCCCCccCHHHHHHH-hhCCCE-----------------------EEE
Confidence 4567788864 5466777 8899999887 445666777776 355665 666
Q ss_pred eCCCCCccccccccceeeccccccCccc
Q 021360 191 VPSLPKQTHRYTAADEVINSLLDLRPEK 218 (313)
Q Consensus 191 v~~~~~~~~~~~~s~~ii~~l~e~~~~~ 218 (313)
+.+... .....+|+.+++.+.+|+.+.
T Consensus 143 I~r~~~-~g~~iSST~IR~~L~~G~v~~ 169 (182)
T smart00764 143 IERKKA-NGQPISASTVRKLLKEGNLEE 169 (182)
T ss_pred EecccC-CCcEECHHHHHHHHHcCCHHH
Confidence 666333 344568899999999888766
No 220
>PLN02580 trehalose-phosphatase
Probab=92.47 E-value=0.28 Score=44.17 Aligned_cols=35 Identities=14% Similarity=0.177 Sum_probs=29.5
Q ss_pred CCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHH
Q 021360 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKI 125 (313)
Q Consensus 90 ~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l 125 (313)
..+.|++.+.|+.|.+. .+++|+|+.+.+.++..+
T Consensus 140 A~~s~~~~~aL~~La~~-~~VAIVSGR~~~~L~~~l 174 (384)
T PLN02580 140 ALMSDAMRSAVKNVAKY-FPTAIISGRSRDKVYELV 174 (384)
T ss_pred ccCCHHHHHHHHHHhhC-CCEEEEeCCCHHHHHHHh
Confidence 35667889999999988 689999999999888666
No 221
>PLN03017 trehalose-phosphatase
Probab=92.27 E-value=0.4 Score=42.81 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=25.5
Q ss_pred CCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHH
Q 021360 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKI 125 (313)
Q Consensus 92 ~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l 125 (313)
+.+++.+.|++|. .+++++++|+.+...+....
T Consensus 134 i~~~~~~aL~~La-~~~~vaIvSGR~~~~l~~~~ 166 (366)
T PLN03017 134 MSSKMRRTVKKLA-KCFPTAIVTGRCIDKVYNFV 166 (366)
T ss_pred CCHHHHHHHHHHh-cCCcEEEEeCCCHHHHHHhh
Confidence 4456778888888 66889999999888776553
No 222
>PLN02151 trehalose-phosphatase
Probab=91.79 E-value=0.36 Score=42.89 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=27.8
Q ss_pred CCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHH
Q 021360 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKI 125 (313)
Q Consensus 91 ~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l 125 (313)
.+.|++.+.|+.|.+ +.+++++|+.+...+...+
T Consensus 120 ~~~~~~~~aL~~La~-~~~vaIvSGR~~~~l~~~~ 153 (354)
T PLN02151 120 FMSKKMRNTVRKLAK-CFPTAIVSGRCREKVSSFV 153 (354)
T ss_pred cCCHHHHHHHHHHhc-CCCEEEEECCCHHHHHHHc
Confidence 456788899999985 4799999999998887655
No 223
>PRK10444 UMP phosphatase; Provisional
Probab=91.73 E-value=1.4 Score=37.29 Aligned_cols=50 Identities=26% Similarity=0.368 Sum_probs=36.3
Q ss_pred CCCchHHHHHHHHHHCCCCEEEEeCCchHHHH---HHHHhhcCCccccceEEec
Q 021360 91 KALPGANRLIKHLSCHGVPMALASNSHRATIE---SKISYQHGWNESFSVIVGS 141 (313)
Q Consensus 91 ~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~---~~l~~~~~~~~~f~~v~~~ 141 (313)
.+.|++.+++++|++.|.+++++||++..... ..+ +.+|+.-.-+.++++
T Consensus 17 ~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l-~~~G~~~~~~~i~ts 69 (248)
T PRK10444 17 VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRF-ATAGVDVPDSVFYTS 69 (248)
T ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH-HHcCCCCCHhhEecH
Confidence 46789999999999999999999999765433 334 456764334555544
No 224
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=91.30 E-value=0.95 Score=33.51 Aligned_cols=83 Identities=16% Similarity=0.116 Sum_probs=56.4
Q ss_pred cCCCCchHHHHHHHHHHCCCCEEEEeCCchHHH-HHHHHhhcCCcccc---------ceEEecCCCCCCCCChHHHHHHH
Q 021360 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATI-ESKISYQHGWNESF---------SVIVGSDEVRTGKPSPDIFLEAA 158 (313)
Q Consensus 89 ~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~-~~~l~~~~~~~~~f---------~~v~~~~~~~~~kp~~~~~~~~~ 158 (313)
.+..|+++...|..|++.|+.++++|++....+ ...| +.+.+...+ +.+..++ ..+...|.++-
T Consensus 42 e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L-~~fkvk~~Gvlkps~e~ft~~~~g~-----gsklghfke~~ 115 (144)
T KOG4549|consen 42 EMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGL-ETFKVKQTGVLKPSLEEFTFEAVGD-----GSKLGHFKEFT 115 (144)
T ss_pred eeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHH-HHhccCcccccchhhhcCceeeecC-----cccchhHHHHh
Confidence 467899999999999999999999999976554 4444 555543322 2222222 12334567777
Q ss_pred HHcCCCCCcEEEEecCHhh
Q 021360 159 KRLNMEPSSSLVIEDSVIG 177 (313)
Q Consensus 159 ~~~~~~~~~~i~vgD~~~D 177 (313)
...+....+..++.|...+
T Consensus 116 n~s~~~~k~~~~fdDesrn 134 (144)
T KOG4549|consen 116 NNSNSIEKNKQVFDDESRN 134 (144)
T ss_pred hccCcchhceeeecccccC
Confidence 7778888888888886643
No 225
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=90.30 E-value=3.2 Score=34.85 Aligned_cols=87 Identities=21% Similarity=0.237 Sum_probs=55.5
Q ss_pred CCCCchHHHHHHHHHHCCCCEEEEeCCc---hHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCC
Q 021360 90 VKALPGANRLIKHLSCHGVPMALASNSH---RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS 166 (313)
Q Consensus 90 ~~~~pgv~e~l~~l~~~g~~~~i~s~~~---~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~ 166 (313)
-.++|++.+.++.+++.|+++.++||+. .......+.+.+|+.-..+.++.+. ......+++.. +.+
T Consensus 13 ~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~iits~---------~~~~~~l~~~~-~~~ 82 (236)
T TIGR01460 13 HKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQIITSG---------SVTKDLLRQRF-EGE 82 (236)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHeeeHH---------HHHHHHHHHhC-CCC
Confidence 3568899999999999999999999775 2333344534467755555555543 22333333322 335
Q ss_pred cEEEEecCHhhHHHHHHcCCe
Q 021360 167 SSLVIEDSVIGVVAGKAAGME 187 (313)
Q Consensus 167 ~~i~vgD~~~Di~~a~~~G~~ 187 (313)
.++++|.. ...+.++..|+.
T Consensus 83 ~v~v~G~~-~~~~~l~~~g~~ 102 (236)
T TIGR01460 83 KVYVIGVG-ELRESLEGLGFR 102 (236)
T ss_pred EEEEECCH-HHHHHHHHcCCc
Confidence 68888863 445566777764
No 226
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=90.08 E-value=0.81 Score=39.06 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=28.6
Q ss_pred CCCCchHHHHHHHHHHCC-CCEEEEeCCchHHHHHHH
Q 021360 90 VKALPGANRLIKHLSCHG-VPMALASNSHRATIESKI 125 (313)
Q Consensus 90 ~~~~pgv~e~l~~l~~~g-~~~~i~s~~~~~~~~~~l 125 (313)
..+.+++.++|+.|.+.. -.++++|+.+..+++..+
T Consensus 39 a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~ 75 (266)
T COG1877 39 AVPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLF 75 (266)
T ss_pred cCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhc
Confidence 356778889999998872 248999999999888666
No 227
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=88.62 E-value=0.68 Score=39.48 Aligned_cols=49 Identities=18% Similarity=0.389 Sum_probs=36.6
Q ss_pred CCchHHHHHHHHHHCCCCEEEEeCCchHH---HHHHHHhhcCCccccceEEec
Q 021360 92 ALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNESFSVIVGS 141 (313)
Q Consensus 92 ~~pgv~e~l~~l~~~g~~~~i~s~~~~~~---~~~~l~~~~~~~~~f~~v~~~ 141 (313)
+.|++.+.+++|++.|++++++||++... +...+ +.+|+....+.++++
T Consensus 22 ~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l-~~~g~~~~~~~i~ts 73 (257)
T TIGR01458 22 AVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERL-QRLGFDISEDEVFTP 73 (257)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH-HHcCCCCCHHHeEcH
Confidence 67899999999999999999999876543 44455 567775444555554
No 228
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=88.61 E-value=4.2 Score=41.88 Aligned_cols=51 Identities=20% Similarity=0.291 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHhhh-------ccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHH
Q 021360 71 AKHEFVNEVYSMFSDHL-------CKVKALPGANRLIKHLSCHGVPMALASNSHRATI 121 (313)
Q Consensus 71 ~~~~~~~~~~~~~~~~~-------~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~ 121 (313)
+.++..++..+..+... -+-++.+|+.+.++.|++.|++++++|+-..+.+
T Consensus 624 ~Re~~L~e~ae~iEk~L~LLGATAIEDkLQdgVPetI~~L~~AGIKIWVLTGDK~ETA 681 (1151)
T KOG0206|consen 624 DREELLDEVAEEIEKDLILLGATAIEDKLQDGVPETIAKLAQAGIKIWVLTGDKQETA 681 (1151)
T ss_pred CHHHHHHHHHHHHHhcchhhcceeeechhccCchHHHHHHHHcCCEEEEEcCcHHHHH
Confidence 45555555555555443 1457889999999999999999999987655443
No 229
>PTZ00174 phosphomannomutase; Provisional
Probab=87.93 E-value=0.63 Score=39.41 Aligned_cols=43 Identities=7% Similarity=-0.169 Sum_probs=34.7
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEec----CHhhHHHHHHcCCeEEEeC
Q 021360 146 TGKPSPDIFLEAAKRLNMEPSSSLVIED----SVIGVVAGKAAGMEVVAVP 192 (313)
Q Consensus 146 ~~kp~~~~~~~~~~~~~~~~~~~i~vgD----~~~Di~~a~~~G~~~i~v~ 192 (313)
.+-.+...++.+++. ++++++||| +.||++|.+.++...+.|.
T Consensus 185 ~gvsKg~al~~L~~~----~~eviafGD~~~~~~NDieMl~~~~~~g~~v~ 231 (247)
T PTZ00174 185 KGWDKTYCLRHLEND----FKEIHFFGDKTFEGGNDYEIYNDPRTIGHSVK 231 (247)
T ss_pred CCCcHHHHHHHHHhh----hhhEEEEcccCCCCCCcHhhhhcCCCceEEeC
Confidence 455566888888877 699999999 8999999998777656665
No 230
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=87.06 E-value=0.087 Score=44.61 Aligned_cols=94 Identities=12% Similarity=0.126 Sum_probs=57.1
Q ss_pred CCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCC-ccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcE
Q 021360 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW-NESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 168 (313)
Q Consensus 90 ~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~-~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 168 (313)
+.-+|++.++|....+. +.++++|.+.+.+...++ ..+.- ...+...+..+.+....+ .+.+-+...|-+..++
T Consensus 130 V~kRP~vdeFL~~~s~~-~e~v~FTAs~~~Ya~~v~-D~LD~~~~i~~~RlyR~~C~~~~g---~yvKdls~~~~dL~~v 204 (262)
T KOG1605|consen 130 VRKRPHVDEFLSRVSKW-YELVLFTASLEVYADPLL-DILDPDRKIISHRLYRDSCTLKDG---NYVKDLSVLGRDLSKV 204 (262)
T ss_pred EEcCCCHHHHHHHhHHH-HHHHHHHhhhHHHHHHHH-HHccCCCCeeeeeecccceEeECC---cEEEEcceeccCcccE
Confidence 45678899999888877 788888888888877666 44432 111222222221111100 0111113556688999
Q ss_pred EEEecCHhhHHHHHHcCCeE
Q 021360 169 LVIEDSVIGVVAGKAAGMEV 188 (313)
Q Consensus 169 i~vgD~~~Di~~a~~~G~~~ 188 (313)
+.|+|++.-..+--.-|+++
T Consensus 205 iIiDNsP~sy~~~p~NgIpI 224 (262)
T KOG1605|consen 205 IIVDNSPQSYRLQPENGIPI 224 (262)
T ss_pred EEEcCChHHhccCccCCCcc
Confidence 99999998777766666653
No 231
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=86.78 E-value=1.3 Score=42.01 Aligned_cols=88 Identities=16% Similarity=0.253 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHCCCCEEEEeCCchHH---HHHHHHhhcC-----CccccceEEecCC--------CCCCCCChHHHHHHH
Q 021360 95 GANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHG-----WNESFSVIVGSDE--------VRTGKPSPDIFLEAA 158 (313)
Q Consensus 95 gv~e~l~~l~~~g~~~~i~s~~~~~~---~~~~l~~~~~-----~~~~f~~v~~~~~--------~~~~kp~~~~~~~~~ 158 (313)
|+..+...+++.||++..+|...... .+..| .... +.+- -.+++.+. +-.+|| +-|+-+|
T Consensus 562 GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL-~nv~QdG~~LPdG-PViLSPd~lf~Al~REVI~RkP--e~FKIAc 637 (738)
T KOG2116|consen 562 GVAKLYTKIKENGYKILYLSARAIGQADSTRQYL-KNVEQDGKKLPDG-PVILSPDSLFAALHREVIERKP--EVFKIAC 637 (738)
T ss_pred hHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHH-HHHhhcCccCCCC-CEEeCCCcchHHHHHHHHHcCc--hhhhHHH
Confidence 67778888899999998888764322 23333 2111 1110 12333221 114444 3333333
Q ss_pred -----HHcCCCCCc--EEEEecCHhhHHHHHHcCCe
Q 021360 159 -----KRLNMEPSS--SLVIEDSVIGVVAGKAAGME 187 (313)
Q Consensus 159 -----~~~~~~~~~--~i~vgD~~~Di~~a~~~G~~ 187 (313)
..+. +-.+ ...||+..+|.-.=++.|++
T Consensus 638 L~DIk~LF~-p~~nPFYAgFGNR~TDviSY~~VgVP 672 (738)
T KOG2116|consen 638 LTDIKNLFP-PSGNPFYAGFGNRITDVISYRQVGVP 672 (738)
T ss_pred HHHHHHhcC-CCCCceeeecCCCcccceeeeeecCC
Confidence 2332 2233 33489999998888888875
No 232
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=83.80 E-value=5.7 Score=35.08 Aligned_cols=88 Identities=17% Similarity=0.221 Sum_probs=56.6
Q ss_pred CCCCchHHHHHHHHHHC----CCCEEEEeCCc---hHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcC
Q 021360 90 VKALPGANRLIKHLSCH----GVPMALASNSH---RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN 162 (313)
Q Consensus 90 ~~~~pgv~e~l~~l~~~----g~~~~i~s~~~---~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~ 162 (313)
-.+.|++.++++.|+.. |+++.++||.. .......+.+.+|+.-..+.++.+. .....+++++
T Consensus 15 ~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~~~~~~i~~s~---------~~~~~ll~~~- 84 (321)
T TIGR01456 15 KKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVDVSPLQVIQSH---------SPYKSLVNKY- 84 (321)
T ss_pred ccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCCCCHHHHHhhh---------HHHHHHHHHc-
Confidence 35688999999999998 99999999886 3333333336677743333444331 1334444443
Q ss_pred CCCCcEEEEecCHhhHHHHHHcCCeEEE
Q 021360 163 MEPSSSLVIEDSVIGVVAGKAAGMEVVA 190 (313)
Q Consensus 163 ~~~~~~i~vgD~~~Di~~a~~~G~~~i~ 190 (313)
. ..++++|.+. -...++.+|+..+.
T Consensus 85 -~-~~v~viG~~~-~~~~l~~~G~~~vv 109 (321)
T TIGR01456 85 -E-KRILAVGTGS-VRGVAEGYGFQNVV 109 (321)
T ss_pred -C-CceEEEeChH-HHHHHHHcCCcccc
Confidence 2 2688888764 46667789987543
No 233
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=82.82 E-value=0.5 Score=36.99 Aligned_cols=66 Identities=18% Similarity=0.215 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHCCCCEEEE--------eCCchHHHHHHHHhhcCCccccceEEecCCCC---CCCCChHHHHHHHHHcCC
Q 021360 95 GANRLIKHLSCHGVPMALA--------SNSHRATIESKISYQHGWNESFSVIVGSDEVR---TGKPSPDIFLEAAKRLNM 163 (313)
Q Consensus 95 gv~e~l~~l~~~g~~~~i~--------s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~---~~kp~~~~~~~~~~~~~~ 163 (313)
...+-++.|.+.|+...++ ..++++|++.+|.+.+++ ..+++|+|+. .++++.+.+++.++++|+
T Consensus 63 s~~ek~~~l~~~Gvd~~~~~~F~~~~~~ls~~~Fi~~iL~~~l~~----~~ivvG~DfrFG~~~~G~~~~L~~~~~~~g~ 138 (157)
T PF06574_consen 63 SLEEKLELLESLGVDYVIVIPFTEEFANLSPEDFIEKILKEKLNV----KHIVVGEDFRFGKNRSGDVELLKELGKEYGF 138 (157)
T ss_dssp -HHHHHHHHHHTTESEEEEE-CCCHHCCS-HHHHHHHHCCCHCTE----EEEEEETT-EESGGGEEEHHHHHHCTTTT-S
T ss_pred CHHHHHHHHHHcCCCEEEEecchHHHHcCCHHHHHHHHHHhcCCc----cEEEEccCccCCCCCCCCHHHHHHhcccCce
Confidence 3456677788888776554 345678888777457888 8899999886 445677888888777777
Q ss_pred C
Q 021360 164 E 164 (313)
Q Consensus 164 ~ 164 (313)
.
T Consensus 139 ~ 139 (157)
T PF06574_consen 139 E 139 (157)
T ss_dssp E
T ss_pred E
Confidence 6
No 234
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=82.79 E-value=3.5 Score=37.05 Aligned_cols=100 Identities=18% Similarity=0.221 Sum_probs=70.1
Q ss_pred chHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhc--CCccccceEEecCC-------------C--------------
Q 021360 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQH--GWNESFSVIVGSDE-------------V-------------- 144 (313)
Q Consensus 94 pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~--~~~~~f~~v~~~~~-------------~-------------- 144 (313)
+....++..+++.|.+..+.||+...+....+...+ +...+|+.+++... +
T Consensus 201 ~~~v~~l~~~r~sGKk~fl~Tns~~~ytd~~mt~~~~~dW~~yfd~v~~~a~Kp~ff~e~~vlreV~t~~g~l~~g~~~~ 280 (424)
T KOG2469|consen 201 GTIVPLLSMLRDSGKKTFLHTNSDWDYTDIFMAFHYGFDWETYFDLVETRAAKPGFFHEGTVLREVEPQEGLLKNGDNTG 280 (424)
T ss_pred CccccchHHHHhhccceEEeeccccchhhHHHHHHhCCCcceeEEEEEEeccCCccccccceeeeeccccccccccccCC
Confidence 334448899999999999999998887766553334 46677887766520 0
Q ss_pred ---CCCCCChHHHHHHHHHcCCCCCcEEEEecCHh-hHH-HHHHcCCeEEEeCC
Q 021360 145 ---RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVI-GVV-AGKAAGMEVVAVPS 193 (313)
Q Consensus 145 ---~~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~-Di~-~a~~~G~~~i~v~~ 193 (313)
..+.+++.....++..++....+++++||+.. |+. .-+.-|++++.|.+
T Consensus 281 p~e~~~~ySggs~~~~~~~l~~~g~diLy~gdHi~~dvl~skk~~~wrt~lv~p 334 (424)
T KOG2469|consen 281 PLEQGGVYSGGSLKTVETSMKVKGKDILYGGDHIWGDVLVSKKRRGWRTVLVAP 334 (424)
T ss_pred cchhcccCCcchHHHHHHHhcccccceeecccceeeeEEecceecceEEEEEeh
Confidence 02334445667777777888899999999995 644 35666888777766
No 235
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=81.85 E-value=0.84 Score=38.54 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=12.6
Q ss_pred ccEEEEecCCccccC
Q 021360 9 MSCVILDLDGTLLNT 23 (313)
Q Consensus 9 ~k~vifDlDGTL~d~ 23 (313)
..+++||+||||++.
T Consensus 3 ~~~l~lD~DGTL~~~ 17 (244)
T TIGR00685 3 KRAFFFDYDGTLSEI 17 (244)
T ss_pred cEEEEEecCccccCC
Confidence 367899999999964
No 236
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=81.83 E-value=15 Score=31.10 Aligned_cols=72 Identities=15% Similarity=0.100 Sum_probs=43.4
Q ss_pred CCCEEEEeCCchHHHHHHH--HhhcCCccccc-eEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHH
Q 021360 107 GVPMALASNSHRATIESKI--SYQHGWNESFS-VIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKA 183 (313)
Q Consensus 107 g~~~~i~s~~~~~~~~~~l--~~~~~~~~~f~-~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~ 183 (313)
-++++++|..+...-++.+ .+..|+.- | ..+. .+-++..+ ++.++-. |+|+|....++.|.
T Consensus 186 piRtalVTAR~apah~RvI~TLr~Wgv~v--DEafFL-----gG~~K~~v----L~~~~ph----IFFDDQ~~H~~~a~- 249 (264)
T PF06189_consen 186 PIRTALVTARSAPAHERVIRTLRSWGVRV--DEAFFL-----GGLPKGPV----LKAFRPH----IFFDDQDGHLESAS- 249 (264)
T ss_pred ceEEEEEEcCCCchhHHHHHHHHHcCCcH--hHHHHh-----CCCchhHH----HHhhCCC----EeecCchhhhhHhh-
Confidence 3778899976544334444 14455521 2 2222 23333333 3444444 89999999999998
Q ss_pred cCCeEEEeCCC
Q 021360 184 AGMEVVAVPSL 194 (313)
Q Consensus 184 ~G~~~i~v~~~ 194 (313)
.++++..|+.+
T Consensus 250 ~~vps~hVP~g 260 (264)
T PF06189_consen 250 KVVPSGHVPYG 260 (264)
T ss_pred cCCCEEeccCC
Confidence 88888888764
No 237
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=80.50 E-value=3.1 Score=41.60 Aligned_cols=35 Identities=14% Similarity=0.239 Sum_probs=29.2
Q ss_pred CCCchHHHHHHHHHHC-CCCEEEEeCCchHHHHHHH
Q 021360 91 KALPGANRLIKHLSCH-GVPMALASNSHRATIESKI 125 (313)
Q Consensus 91 ~~~pgv~e~l~~l~~~-g~~~~i~s~~~~~~~~~~l 125 (313)
.+.|++.++|+.|.+. +-.++|+|+.+.+.++..+
T Consensus 532 ~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~ 567 (797)
T PLN03063 532 GLHPELKETLKALCSDPKTTVVVLSRSGKDILDKNF 567 (797)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHh
Confidence 4567888999999764 5679999999999988777
No 238
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=79.92 E-value=4.3 Score=34.82 Aligned_cols=42 Identities=21% Similarity=0.334 Sum_probs=34.8
Q ss_pred CchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCcccc
Q 021360 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF 135 (313)
Q Consensus 93 ~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f 135 (313)
.+.+.+.|+.+++.|++++++|+.+...+...+ +.+++..++
T Consensus 23 ~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~-~~l~l~~~~ 64 (273)
T PRK00192 23 YEPAKPALKALKEKGIPVIPCTSKTAAEVEVLR-KELGLEDPF 64 (273)
T ss_pred cHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHcCCCCCE
Confidence 356778999999999999999999998888777 778876543
No 239
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=79.47 E-value=1.6 Score=35.14 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=18.5
Q ss_pred cEEEEecCCccccChHHHHHHHHHHHHH
Q 021360 10 SCVILDLDGTLLNTDGMFSEVLKTFLVK 37 (313)
Q Consensus 10 k~vifDlDGTL~d~~~~~~~~~~~~~~~ 37 (313)
-+++||+||||.........-..+.+++
T Consensus 12 ~l~lfdvdgtLt~~r~~~~~e~~~~l~~ 39 (252)
T KOG3189|consen 12 TLCLFDVDGTLTPPRQKVTPEMLEFLQK 39 (252)
T ss_pred eEEEEecCCccccccccCCHHHHHHHHH
Confidence 3678999999998755544444444443
No 240
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=79.02 E-value=6 Score=33.73 Aligned_cols=40 Identities=15% Similarity=0.207 Sum_probs=33.0
Q ss_pred CCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCc
Q 021360 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (313)
Q Consensus 92 ~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~ 132 (313)
+.+...+.|++++++|+.++++|+.+...+...+ +.+++.
T Consensus 21 i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~-~~l~~~ 60 (270)
T PRK10513 21 ISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYL-KELHME 60 (270)
T ss_pred cCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHH-HHhCCC
Confidence 3445678899999999999999999998887777 667764
No 241
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=79.01 E-value=17 Score=31.48 Aligned_cols=96 Identities=19% Similarity=0.209 Sum_probs=57.7
Q ss_pred cCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHH--hhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCC
Q 021360 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKIS--YQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS 166 (313)
Q Consensus 89 ~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~--~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~ 166 (313)
.-.+.||+.+.++.|++.|..+.++||++....+..+. +++|+.. +..++. - +........+++.....+
T Consensus 36 g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~-----v~e~~i--~-ssa~~~a~ylk~~~~~~k 107 (306)
T KOG2882|consen 36 GEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNS-----VKEENI--F-SSAYAIADYLKKRKPFGK 107 (306)
T ss_pred cCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccc-----cCcccc--c-ChHHHHHHHHHHhCcCCC
Confidence 45789999999999999999999999987655444441 4555531 111111 1 111233334444444557
Q ss_pred cEEEEecCHhhHHHHHHcCCeEEEeCC
Q 021360 167 SSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 167 ~~i~vgD~~~Di~~a~~~G~~~i~v~~ 193 (313)
.++++|-..- .+-.+++|+.......
T Consensus 108 ~Vyvig~~gi-~~eL~~aG~~~~g~~~ 133 (306)
T KOG2882|consen 108 KVYVIGEEGI-REELDEAGFEYFGGGP 133 (306)
T ss_pred eEEEecchhh-hHHHHHcCceeecCCC
Confidence 7887775432 2345677777666555
No 242
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=78.39 E-value=4.7 Score=40.85 Aligned_cols=36 Identities=14% Similarity=0.334 Sum_probs=29.8
Q ss_pred CCCCchHHHHHHHHHHC-CCCEEEEeCCchHHHHHHH
Q 021360 90 VKALPGANRLIKHLSCH-GVPMALASNSHRATIESKI 125 (313)
Q Consensus 90 ~~~~pgv~e~l~~l~~~-g~~~~i~s~~~~~~~~~~l 125 (313)
..+.|++.++|+.|.+. +-.++|+|+.+.+.++..+
T Consensus 621 a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~f 657 (934)
T PLN03064 621 LRLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENF 657 (934)
T ss_pred cCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHh
Confidence 35667889999999774 5689999999999988777
No 243
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=76.86 E-value=6 Score=32.94 Aligned_cols=40 Identities=23% Similarity=0.214 Sum_probs=33.3
Q ss_pred CchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCcc
Q 021360 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE 133 (313)
Q Consensus 93 ~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~ 133 (313)
.+...+.|+++++.|++++++|+.+...+...+ +.+++..
T Consensus 17 ~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~-~~lg~~~ 56 (225)
T TIGR02461 17 PGPAREALEELKDLGFPIVFVSSKTRAEQEYYR-EELGVEP 56 (225)
T ss_pred chHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-HHcCCCC
Confidence 346789999999999999999999988877766 7788754
No 244
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=75.25 E-value=2 Score=33.17 Aligned_cols=16 Identities=38% Similarity=0.640 Sum_probs=13.8
Q ss_pred cEEEEecCCccccChH
Q 021360 10 SCVILDLDGTLLNTDG 25 (313)
Q Consensus 10 k~vifDlDGTL~d~~~ 25 (313)
+.+++||||||+++.+
T Consensus 3 ~~lvldld~tl~~~~~ 18 (148)
T smart00577 3 KTLVLDLDETLVHSTH 18 (148)
T ss_pred cEEEEeCCCCeECCCC
Confidence 5789999999999754
No 245
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=74.53 E-value=7.1 Score=32.14 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=31.7
Q ss_pred HHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCc
Q 021360 96 ANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (313)
Q Consensus 96 v~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~ 132 (313)
..+.|+.+++.|++++++|+.+...+...+ +.+++.
T Consensus 21 ~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~-~~l~~~ 56 (221)
T TIGR02463 21 AAPWLTRLQEAGIPVILCTSKTAAEVEYLQ-KALGLT 56 (221)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCCC
Confidence 668899999999999999999999988777 777875
No 246
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=74.37 E-value=35 Score=25.80 Aligned_cols=98 Identities=22% Similarity=0.259 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHCCCCEEEEeCCchHHHHHHH-H---hhcCCccccc-eEEecCCC-----CCCCCChHHHHHHHHHcCCC
Q 021360 95 GANRLIKHLSCHGVPMALASNSHRATIESKI-S---YQHGWNESFS-VIVGSDEV-----RTGKPSPDIFLEAAKRLNME 164 (313)
Q Consensus 95 gv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l-~---~~~~~~~~f~-~v~~~~~~-----~~~kp~~~~~~~~~~~~~~~ 164 (313)
.+.+++....+.|-++.++-++.....-..+ . ...++..... .+....+. .....++.+.+.+...+.+.
T Consensus 23 ~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (138)
T PF13580_consen 23 KAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYDEGFARQLLALYDIR 102 (138)
T ss_dssp HHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGGGTHHHHHHHHTT--
T ss_pred HHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchhhHHHHHHHHHcCCC
Confidence 4556666666777888888877553332211 1 2233333322 33332221 01112234556666677889
Q ss_pred CCcEEEE----ecCHhhHHH---HHHcCCeEEEeC
Q 021360 165 PSSSLVI----EDSVIGVVA---GKAAGMEVVAVP 192 (313)
Q Consensus 165 ~~~~i~v----gD~~~Di~~---a~~~G~~~i~v~ 192 (313)
|.+++++ |.+++=+++ |++.|+.++.+.
T Consensus 103 ~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 103 PGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 9998886 777775555 788899998764
No 247
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=74.17 E-value=6.4 Score=32.28 Aligned_cols=40 Identities=15% Similarity=0.153 Sum_probs=33.4
Q ss_pred CCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCc
Q 021360 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (313)
Q Consensus 92 ~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~ 132 (313)
+.|...+.|+++++.|++++++|+.+...+...+ +.+++.
T Consensus 19 i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~-~~l~~~ 58 (215)
T TIGR01487 19 ISERAIEAIRKAEKKGIPVSLVTGNTVPFARALA-VLIGTS 58 (215)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHH-HHhCCC
Confidence 4457778999999999999999999988887766 677764
No 248
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=73.97 E-value=3.7 Score=37.25 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=15.5
Q ss_pred cCccEEEEecCCccccCh
Q 021360 7 KLMSCVILDLDGTLLNTD 24 (313)
Q Consensus 7 ~~~k~vifDlDGTL~d~~ 24 (313)
...+.|++|+||||..++
T Consensus 373 ~n~kiVVsDiDGTITkSD 390 (580)
T COG5083 373 NNKKIVVSDIDGTITKSD 390 (580)
T ss_pred CCCcEEEEecCCcEEehh
Confidence 357899999999999875
No 249
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=73.97 E-value=27 Score=36.04 Aligned_cols=70 Identities=9% Similarity=-0.016 Sum_probs=45.0
Q ss_pred HHHHHHHHhhcCCccccceEEecC-----CCCCCCCChHHHHHHHHHcCCCCCcEEE-EecCHh-hHHHHHHcCCeEEEe
Q 021360 119 ATIESKISYQHGWNESFSVIVGSD-----EVRTGKPSPDIFLEAAKRLNMEPSSSLV-IEDSVI-GVVAGKAAGMEVVAV 191 (313)
Q Consensus 119 ~~~~~~l~~~~~~~~~f~~v~~~~-----~~~~~kp~~~~~~~~~~~~~~~~~~~i~-vgD~~~-Di~~a~~~G~~~i~v 191 (313)
..++..| +..++.. ..+++.+ -.+..-.+...++.+..++|++.+++++ +||+-+ |++....--.+++.+
T Consensus 924 ~elr~~L-r~~gLr~--~~iys~~~~~LDVlP~~ASKgqAlRyL~~rwgi~l~~v~VfaGdSGntD~e~Ll~G~~~tvi~ 1000 (1050)
T TIGR02468 924 KELRKLL-RIQGLRC--HAVYCRNGTRLNVIPLLASRSQALRYLFVRWGIELANMAVFVGESGDTDYEGLLGGLHKTVIL 1000 (1050)
T ss_pred HHHHHHH-HhCCCce--EEEeecCCcEeeeeeCCCCHHHHHHHHHHHcCCChHHeEEEeccCCCCCHHHHhCCceeEEEE
Confidence 4455555 5556632 3344432 1235556778999999999999999955 999999 988663322334443
No 250
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=73.00 E-value=10 Score=32.06 Aligned_cols=40 Identities=15% Similarity=0.312 Sum_probs=33.0
Q ss_pred CCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCc
Q 021360 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (313)
Q Consensus 92 ~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~ 132 (313)
+.+...+.|+++++.|+.++++|+.+...+...+ +.+++.
T Consensus 17 i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~-~~~~~~ 56 (256)
T TIGR00099 17 ISPSTKEALAKLREKGIKVVLATGRPYKEVKNIL-KELGLD 56 (256)
T ss_pred cCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCCC
Confidence 3456778899999999999999999988887777 667764
No 251
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=72.95 E-value=17 Score=31.88 Aligned_cols=85 Identities=18% Similarity=0.161 Sum_probs=54.0
Q ss_pred cCCCCchHHHHHHHHHHCC-CCEEEEeCCchHHHHHHHHhhcCC-------------ccccceEEecCCCCCCCCChHHH
Q 021360 89 KVKALPGANRLIKHLSCHG-VPMALASNSHRATIESKISYQHGW-------------NESFSVIVGSDEVRTGKPSPDIF 154 (313)
Q Consensus 89 ~~~~~pgv~e~l~~l~~~g-~~~~i~s~~~~~~~~~~l~~~~~~-------------~~~f~~v~~~~~~~~~kp~~~~~ 154 (313)
...++||+-.+.+.|.+.| .++..+||++..+...+. +.++- ...++.++.+.... | ...+
T Consensus 194 tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~-efi~~~~~P~GPl~L~~~g~~~~~i~~sga~r--K--~~~l 268 (373)
T COG4850 194 TRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQ-EFITNRNFPYGPLLLRRWGGVLDNIIESGAAR--K--GQSL 268 (373)
T ss_pred ccCCCCCHHHHHHHHHhcCCCCeEEecCChhHhHHHHH-HHHhcCCCCCCchhHhhcCCcccccccchhhh--c--ccHH
Confidence 5689999999999999987 899999999987654322 22211 11123444333222 2 2445
Q ss_pred HHHHHHcCCCCCcEEEEecCH-hhHHH
Q 021360 155 LEAAKRLNMEPSSSLVIEDSV-IGVVA 180 (313)
Q Consensus 155 ~~~~~~~~~~~~~~i~vgD~~-~Di~~ 180 (313)
..++.+ ++..+.+.|||+- .|.+.
T Consensus 269 ~nil~~--~p~~kfvLVGDsGE~DpeI 293 (373)
T COG4850 269 RNILRR--YPDRKFVLVGDSGEHDPEI 293 (373)
T ss_pred HHHHHh--CCCceEEEecCCCCcCHHH
Confidence 556555 4667788888876 57655
No 252
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=72.94 E-value=4.1 Score=40.14 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=26.4
Q ss_pred CCCCchHHHHHHHHHHCCCCEEEEeCCchHH
Q 021360 90 VKALPGANRLIKHLSCHGVPMALASNSHRAT 120 (313)
Q Consensus 90 ~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~ 120 (313)
.++.|+.++.++.|.+..++++.+|+.+.-.
T Consensus 674 CPlK~Ds~~~I~el~~SSH~vvMITGDnpLT 704 (1160)
T KOG0209|consen 674 CPLKPDSKKTIKELNNSSHRVVMITGDNPLT 704 (1160)
T ss_pred CCCCccHHHHHHHHhccCceEEEEeCCCccc
Confidence 4678999999999999999999999776543
No 253
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.88 E-value=3.9 Score=34.34 Aligned_cols=95 Identities=12% Similarity=0.189 Sum_probs=60.1
Q ss_pred cCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEec---CC-----CCCCCC-------ChHH
Q 021360 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS---DE-----VRTGKP-------SPDI 153 (313)
Q Consensus 89 ~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~---~~-----~~~~kp-------~~~~ 153 (313)
...+.+|+.++...|+..++++.++|.+--..++.++.+..++.. +..+++- ++ .+..+| +...
T Consensus 136 ~i~lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev~~q~~~~~p-n~k~vSN~~~F~edg~l~gF~~~Lihtfnkn~~v 214 (298)
T KOG3128|consen 136 NIALREGYEEFFEALQAHEIPLLIFSAGIGDIIEEVTRQKLVLHP-NVKFVSNYMDFDEDGNLCGFSQPLIHTFNKNSSV 214 (298)
T ss_pred hHHHHHHHHHHHHHHHhCCCceEEEecchHHHHHHHHHHHhccCc-cHHhhhhhhhhcccchhhhhhHHHHHHHccchHH
Confidence 345677999999999999999999999988888877755555433 2222221 11 111111 1122
Q ss_pred HHHHHHHcC--CCCCcEEEEecCHhhHHHHHHc
Q 021360 154 FLEAAKRLN--MEPSSSLVIEDSVIGVVAGKAA 184 (313)
Q Consensus 154 ~~~~~~~~~--~~~~~~i~vgD~~~Di~~a~~~ 184 (313)
++...+.+. -....+++.||+..|+.|+..+
T Consensus 215 ~~~~s~yf~~~~~~~nVillGdsigdl~ma~gv 247 (298)
T KOG3128|consen 215 LQNESEYFHQLAGRVNVILLGDSIGDLHMADGV 247 (298)
T ss_pred HHhhhHHHhhccCCceEEEeccccccchhhcCC
Confidence 333333333 3456799999999999997654
No 254
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=72.65 E-value=7.7 Score=32.07 Aligned_cols=41 Identities=17% Similarity=0.104 Sum_probs=33.3
Q ss_pred CCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCcc
Q 021360 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE 133 (313)
Q Consensus 92 ~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~ 133 (313)
+.|...+.|+++++.|++++++|+.+...+...+ +.+++..
T Consensus 21 i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~-~~l~~~~ 61 (230)
T PRK01158 21 LSLKAVEAIRKAEKLGIPVILATGNVLCFARAAA-KLIGTSG 61 (230)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHH-HHhCCCC
Confidence 3456778899999999999999999988887666 6677753
No 255
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=72.43 E-value=15 Score=32.82 Aligned_cols=44 Identities=25% Similarity=0.200 Sum_probs=38.2
Q ss_pred CChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCC
Q 021360 149 PSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 149 p~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~ 193 (313)
++...|+++..++|- .-.-++|||+...-.+|++..|++.-++.
T Consensus 409 GKescFerI~~RFg~-K~~yvvIgdG~eee~aAK~ln~PfwrI~~ 452 (468)
T KOG3107|consen 409 GKESCFERIQSRFGR-KVVYVVIGDGVEEEQAAKALNMPFWRISS 452 (468)
T ss_pred cHHHHHHHHHHHhCC-ceEEEEecCcHHHHHHHHhhCCceEeecc
Confidence 455899999999997 56678899999999999999999887776
No 256
>PTZ00445 p36-lilke protein; Provisional
Probab=72.42 E-value=2.3 Score=34.84 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=14.6
Q ss_pred cCccEEEEecCCcccc
Q 021360 7 KLMSCVILDLDGTLLN 22 (313)
Q Consensus 7 ~~~k~vifDlDGTL~d 22 (313)
..+|+|++|+|.||+.
T Consensus 41 ~GIk~Va~D~DnTlI~ 56 (219)
T PTZ00445 41 CGIKVIASDFDLTMIT 56 (219)
T ss_pred cCCeEEEecchhhhhh
Confidence 4689999999999998
No 257
>PLN02580 trehalose-phosphatase
Probab=72.17 E-value=6.6 Score=35.53 Aligned_cols=37 Identities=14% Similarity=-0.027 Sum_probs=30.6
Q ss_pred CCCChHHHHHHHHHcCCCCCc---EEEEecCHhhHHHHHH
Q 021360 147 GKPSPDIFLEAAKRLNMEPSS---SLVIEDSVIGVVAGKA 183 (313)
Q Consensus 147 ~kp~~~~~~~~~~~~~~~~~~---~i~vgD~~~Di~~a~~ 183 (313)
+-.+...++.+++.++++..+ .++|||..+|..|.+.
T Consensus 299 g~~KG~Av~~Ll~~~g~~~~d~~~pi~iGDD~TDedmF~~ 338 (384)
T PLN02580 299 DWNKGKAVEFLLESLGLSNCDDVLPIYIGDDRTDEDAFKV 338 (384)
T ss_pred CCCHHHHHHHHHHhcCCCcccceeEEEECCCchHHHHHHh
Confidence 345568899999999988763 3899999999999886
No 258
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=72.01 E-value=10 Score=36.78 Aligned_cols=97 Identities=11% Similarity=-0.050 Sum_probs=55.3
Q ss_pred CCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHH-HhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcEE
Q 021360 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKI-SYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (313)
Q Consensus 91 ~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l-~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i 169 (313)
.-..++..-|+.|+.++...-++++.+-++.-... .+...+......++++.-.+..| ....+.+++. ...++.
T Consensus 711 ~sr~dah~eL~~lR~k~~~aLvi~G~Sl~~cl~yye~Ef~el~~~~~aVv~CRctPtQK---A~v~~llq~~--t~krvc 785 (1051)
T KOG0210|consen 711 TSRGDAHNELNNLRRKTDCALVIDGESLEFCLKYYEDEFIELVCELPAVVCCRCTPTQK---AQVVRLLQKK--TGKRVC 785 (1051)
T ss_pred CCchHHHHHHHHhhcCCCcEEEEcCchHHHHHHHHHHHHHHHHHhcCcEEEEecChhHH---HHHHHHHHHh--hCceEE
Confidence 33457777788888887666666666655543332 12222222224555442211111 3334444442 448899
Q ss_pred EEecCHhhHHHHHHcCCeEEEeC
Q 021360 170 VIEDSVIGVVAGKAAGMEVVAVP 192 (313)
Q Consensus 170 ~vgD~~~Di~~a~~~G~~~i~v~ 192 (313)
.|||+-||+.|.+.+...+-.+.
T Consensus 786 ~IGDGGNDVsMIq~A~~GiGI~g 808 (1051)
T KOG0210|consen 786 AIGDGGNDVSMIQAADVGIGIVG 808 (1051)
T ss_pred EEcCCCccchheeecccceeeec
Confidence 99999999999887776544443
No 259
>PF08057 Ery_res_leader2: Erythromycin resistance leader peptide; InterPro: IPR012559 This family consists of erythromycin resistance gene leader peptides. These leader peptides are involved in the transcriptional attenuation control of the synthesis of the macrolide-lincosamide -streptogramin B resistance protein. It acts as a transcriptional attenuator, in contrast to other inducible erm genes. The mRNA leader sequence can fold in either of two mutually exclusive conformations, one of which is postulated to form in the absence of induction, and to contain two rho factor-independent terminators [].; GO: 0046677 response to antibiotic
Probab=71.73 E-value=1.6 Score=18.33 Aligned_cols=8 Identities=50% Similarity=0.630 Sum_probs=6.4
Q ss_pred cCcccccc
Q 021360 254 LGIPTANL 261 (313)
Q Consensus 254 lg~ptan~ 261 (313)
|.|||.|.
T Consensus 7 lrfptlnq 14 (14)
T PF08057_consen 7 LRFPTLNQ 14 (14)
T ss_pred eeccccCC
Confidence 78999883
No 260
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=71.67 E-value=2.4 Score=33.36 Aligned_cols=15 Identities=40% Similarity=0.713 Sum_probs=13.2
Q ss_pred cEEEEecCCccccCh
Q 021360 10 SCVILDLDGTLLNTD 24 (313)
Q Consensus 10 k~vifDlDGTL~d~~ 24 (313)
+++++|||+||+.+.
T Consensus 2 ~~lvlDLDeTLi~~~ 16 (162)
T TIGR02251 2 KTLVLDLDETLVHST 16 (162)
T ss_pred cEEEEcCCCCcCCCC
Confidence 579999999999874
No 261
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=69.56 E-value=9.8 Score=32.52 Aligned_cols=41 Identities=7% Similarity=0.078 Sum_probs=34.0
Q ss_pred CCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCcc
Q 021360 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE 133 (313)
Q Consensus 92 ~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~ 133 (313)
+.+...+.|++++++|+.++++|+.+...+...+ +.+++..
T Consensus 20 i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~-~~l~~~~ 60 (272)
T PRK15126 20 LGEKTLSTLARLRERDITLTFATGRHVLEMQHIL-GALSLDA 60 (272)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH-HHcCCCC
Confidence 4456778899999999999999999998888777 7777753
No 262
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=68.66 E-value=15 Score=31.07 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCc
Q 021360 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (313)
Q Consensus 95 gv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~ 132 (313)
...+.++.+++.|++++++|+.+...+...+ +.+++.
T Consensus 20 ~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~-~~~~~~ 56 (256)
T TIGR01486 20 PAKEVLERLQELGIPVIPCTSKTAAEVEYLR-KELGLE 56 (256)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCCC
Confidence 4668899999999999999999998888777 777764
No 263
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=68.38 E-value=22 Score=30.89 Aligned_cols=38 Identities=16% Similarity=0.252 Sum_probs=32.4
Q ss_pred ccCCCCchHHHHHHHHHHCC-CCEEEEeCCchHHHHHHH
Q 021360 88 CKVKALPGANRLIKHLSCHG-VPMALASNSHRATIESKI 125 (313)
Q Consensus 88 ~~~~~~pgv~e~l~~l~~~g-~~~~i~s~~~~~~~~~~l 125 (313)
.+..++|.+-++++.+++.| ++.+++||+....+...+
T Consensus 89 GEPTLy~~L~elI~~~k~~g~~~tflvTNgslpdv~~~L 127 (296)
T COG0731 89 GEPTLYPNLGELIEEIKKRGKKTTFLVTNGSLPDVLEEL 127 (296)
T ss_pred CCcccccCHHHHHHHHHhcCCceEEEEeCCChHHHHHHh
Confidence 46789999999999999999 799999999985555444
No 264
>PRK10976 putative hydrolase; Provisional
Probab=68.31 E-value=16 Score=31.09 Aligned_cols=40 Identities=18% Similarity=0.240 Sum_probs=33.0
Q ss_pred CCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCc
Q 021360 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (313)
Q Consensus 92 ~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~ 132 (313)
+-+...+.|++++++|++++++|+.+...+...+ +.+++.
T Consensus 20 is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~-~~l~~~ 59 (266)
T PRK10976 20 LSPYAKETLKLLTARGIHFVFATGRHHVDVGQIR-DNLEIK 59 (266)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHH-HhcCCC
Confidence 3445678899999999999999999988887766 677775
No 265
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=67.90 E-value=11 Score=31.03 Aligned_cols=40 Identities=15% Similarity=0.123 Sum_probs=32.1
Q ss_pred CCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCc
Q 021360 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (313)
Q Consensus 92 ~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~ 132 (313)
+.+...+.|+++++.|+.++++|+.+...+...+ +.+++.
T Consensus 16 i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~-~~l~~~ 55 (225)
T TIGR01482 16 INESALEAIRKAESVGIPVVLVTGNSVQFARALA-KLIGTP 55 (225)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHH-HHhCCC
Confidence 3445668899999999999999999988887666 667753
No 266
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=67.50 E-value=6 Score=38.04 Aligned_cols=53 Identities=19% Similarity=0.112 Sum_probs=40.7
Q ss_pred cCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCc-ccc-ceEEecCC
Q 021360 89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN-ESF-SVIVGSDE 143 (313)
Q Consensus 89 ~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~-~~f-~~v~~~~~ 143 (313)
.++++|++.++|+++.+. |.+.++|.+.+.++...+ +.+.-. .+| +.|++.++
T Consensus 199 ~vKlRP~~~efL~~~skl-femhVyTmg~R~YA~~i~-~liDP~~~lF~dRIisrde 253 (635)
T KOG0323|consen 199 LVKLRPFVHEFLKEANKL-FEMHVYTMGTRDYALEIA-KLIDPEGKYFGDRIISRDE 253 (635)
T ss_pred EEEeCccHHHHHHHHHhh-ceeEEEeccchHHHHHHH-HHhCCCCccccceEEEecC
Confidence 468899999999999988 999999999999987766 433321 233 56777665
No 267
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=67.07 E-value=75 Score=26.62 Aligned_cols=87 Identities=17% Similarity=0.224 Sum_probs=53.2
Q ss_pred HHHHHHC-CCCEEEEeCCc---hHHHHHHHHhhc-CCccccce-EEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEec
Q 021360 100 IKHLSCH-GVPMALASNSH---RATIESKISYQH-GWNESFSV-IVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIED 173 (313)
Q Consensus 100 l~~l~~~-g~~~~i~s~~~---~~~~~~~l~~~~-~~~~~f~~-v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~vgD 173 (313)
|++..++ ++.+.+++.+. .+.+.......+ .+.. |. |+.+.+ ..-|.|..-++.+...|++ |++|+|
T Consensus 23 lDErAdRedI~vrv~gsGaKm~pe~~~~~~~~~~~~~~p--Df~i~isPN--~a~PGP~~ARE~l~~~~iP---~IvI~D 95 (277)
T PRK00994 23 LDERADREDIDVRVVGSGAKMGPEEVEEVVKKMLEEWKP--DFVIVISPN--PAAPGPKKAREILKAAGIP---CIVIGD 95 (277)
T ss_pred HHhhhcccCceEEEeccCCCCCHHHHHHHHHHHHHhhCC--CEEEEECCC--CCCCCchHHHHHHHhcCCC---EEEEcC
Confidence 4444443 67777777663 233332221111 2222 43 333333 3556677788888887884 999999
Q ss_pred CHh--hHHHHHHcCCeEEEeCC
Q 021360 174 SVI--GVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 174 ~~~--Di~~a~~~G~~~i~v~~ 193 (313)
.+. +....++.|+..+.+..
T Consensus 96 ~p~~K~~d~l~~~g~GYIivk~ 117 (277)
T PRK00994 96 APGKKVKDAMEEQGLGYIIVKA 117 (277)
T ss_pred CCccchHHHHHhcCCcEEEEec
Confidence 993 66888888988887765
No 268
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=66.82 E-value=12 Score=31.77 Aligned_cols=40 Identities=13% Similarity=0.183 Sum_probs=32.9
Q ss_pred CCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCc
Q 021360 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (313)
Q Consensus 92 ~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~ 132 (313)
+.|...+.|++++++|+.++++|+.+...+...+ +.+++.
T Consensus 21 i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~-~~l~~~ 60 (272)
T PRK10530 21 ILPESLEALARAREAGYKVIIVTGRHHVAIHPFY-QALALD 60 (272)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHH-HhcCCC
Confidence 3445678899999999999999999988887777 677764
No 269
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=66.78 E-value=12 Score=32.41 Aligned_cols=39 Identities=23% Similarity=0.252 Sum_probs=32.6
Q ss_pred chHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCcc
Q 021360 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE 133 (313)
Q Consensus 94 pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~ 133 (313)
+.+.+.|++|++.|++++++|+.....+.... +.+++..
T Consensus 21 ~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~-~~Lgl~~ 59 (302)
T PRK12702 21 GAARQALAALERRSIPLVLYSLRTRAQLEHLC-RQLRLEH 59 (302)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHhCCCC
Confidence 45678899999999999999999888887766 7788764
No 270
>PLN02588 glycerol-3-phosphate acyltransferase
Probab=66.35 E-value=9.4 Score=35.69 Aligned_cols=37 Identities=22% Similarity=0.178 Sum_probs=25.9
Q ss_pred HHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecC
Q 021360 101 KHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD 142 (313)
Q Consensus 101 ~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~ 142 (313)
+.++..+ +.+++|..++..++..+.+.+|. |.|++.+
T Consensus 140 ~v~~~~~-~~~vv~~~PrvMve~Flkeyl~~----d~V~g~E 176 (525)
T PLN02588 140 QVLKRGG-KRVGVSDLPQVMIDVFLRDYLEI----EVVVGRD 176 (525)
T ss_pred HHHhhcC-cEEEEecCCHHHHHHHHHHhcCc----ceEeeee
Confidence 3345544 45666679999999999888888 6555544
No 271
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=62.42 E-value=19 Score=30.53 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=35.4
Q ss_pred CCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCcc
Q 021360 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE 133 (313)
Q Consensus 92 ~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~ 133 (313)
..+.+.+.|+++++.|++++++|+++...+...+ +.+++..
T Consensus 21 i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~-~~l~~~~ 61 (264)
T COG0561 21 ISPETKEALARLREKGVKVVLATGRPLPDVLSIL-EELGLDG 61 (264)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHH-HHcCCCc
Confidence 5567889999999999999999999998888777 7788854
No 272
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=60.15 E-value=18 Score=30.86 Aligned_cols=38 Identities=21% Similarity=0.188 Sum_probs=32.3
Q ss_pred chHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCc
Q 021360 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (313)
Q Consensus 94 pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~ 132 (313)
+...+.|+++++.|++++++|+.+...+...+ +.+++.
T Consensus 27 ~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~-~~l~~~ 64 (271)
T PRK03669 27 QPAAPWLTRLREAQVPVILCSSKTAAEMLPLQ-QTLGLQ 64 (271)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHH-HHhCCC
Confidence 45668899999999999999999998888777 777774
No 273
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=59.24 E-value=7.2 Score=32.60 Aligned_cols=38 Identities=18% Similarity=0.054 Sum_probs=26.2
Q ss_pred CChHHHHHHHHHcCCC---CCcEEEEecCHhhHHHHHHcCC
Q 021360 149 PSPDIFLEAAKRLNME---PSSSLVIEDSVIGVVAGKAAGM 186 (313)
Q Consensus 149 p~~~~~~~~~~~~~~~---~~~~i~vgD~~~Di~~a~~~G~ 186 (313)
.+...++.++++.+.. +.-++++||...|-.+.+.+.-
T Consensus 165 ~KG~av~~ll~~~~~~~~~~~~~l~~GDD~tDE~~f~~~~~ 205 (235)
T PF02358_consen 165 NKGSAVRRLLEELPFAGPKPDFVLYIGDDRTDEDAFRALRE 205 (235)
T ss_dssp -HHHHHHHHHTTS---------EEEEESSHHHHHHHHTTTT
T ss_pred ChHHHHHHHHHhcCccccccceeEEecCCCCCHHHHHHHHh
Confidence 3568888888887766 7889999999999999777644
No 274
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=57.60 E-value=1.2e+02 Score=25.59 Aligned_cols=94 Identities=12% Similarity=0.163 Sum_probs=58.9
Q ss_pred CCCCchHHHHH---HHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceE-EecCCCC--CCCCChHHHHHHHHHcCC
Q 021360 90 VKALPGANRLI---KHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVI-VGSDEVR--TGKPSPDIFLEAAKRLNM 163 (313)
Q Consensus 90 ~~~~pgv~e~l---~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v-~~~~~~~--~~kp~~~~~~~~~~~~~~ 163 (313)
-.++|+..+++ +.|.+.|+.+.-+++.+....++ | +..|- ..+ -.+...+ .+--++..++.++++.++
T Consensus 103 ~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akr-L-~d~Gc----aavMPlgsPIGSg~Gi~n~~~l~~i~~~~~v 176 (247)
T PF05690_consen 103 KTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKR-L-EDAGC----AAVMPLGSPIGSGRGIQNPYNLRIIIERADV 176 (247)
T ss_dssp TT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHH-H-HHTT-----SEBEEBSSSTTT---SSTHHHHHHHHHHGSS
T ss_pred CCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHH-H-HHCCC----CEEEecccccccCcCCCCHHHHHHHHHhcCC
Confidence 45668777766 56677999998888887766653 4 34555 332 2233333 455578999999999877
Q ss_pred CCCcEEEEecC---HhhHHHHHHcCCeEEEeCC
Q 021360 164 EPSSSLVIEDS---VIGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 164 ~~~~~i~vgD~---~~Di~~a~~~G~~~i~v~~ 193 (313)
+ ++++-+ ++|...|-++|+..+.+++
T Consensus 177 P----vIvDAGiG~pSdaa~AMElG~daVLvNT 205 (247)
T PF05690_consen 177 P----VIVDAGIGTPSDAAQAMELGADAVLVNT 205 (247)
T ss_dssp S----BEEES---SHHHHHHHHHTT-SEEEESH
T ss_pred c----EEEeCCCCCHHHHHHHHHcCCceeehhh
Confidence 6 555544 3799999999999999988
No 275
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=56.42 E-value=76 Score=25.50 Aligned_cols=87 Identities=17% Similarity=0.123 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHC--CCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEe
Q 021360 95 GANRLIKHLSCH--GVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIE 172 (313)
Q Consensus 95 gv~e~l~~l~~~--g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~vg 172 (313)
-+..++++|++. ++++.+-+.++..... ..+.+ .+...+.+...| .+...++.+++ +.|+-++.++
T Consensus 36 a~~~Li~~l~~~~p~~~illT~~T~tg~~~--~~~~~--~~~v~~~~~P~D------~~~~~~rfl~~--~~P~~~i~~E 103 (186)
T PF04413_consen 36 AARPLIKRLRKQRPDLRILLTTTTPTGREM--ARKLL--PDRVDVQYLPLD------FPWAVRRFLDH--WRPDLLIWVE 103 (186)
T ss_dssp HHHHHHHHHTT---TS-EEEEES-CCHHHH--HHGG---GGG-SEEE---S------SHHHHHHHHHH--H--SEEEEES
T ss_pred HHHHHHHHHHHhCCCCeEEEEecCCchHHH--HHHhC--CCCeEEEEeCcc------CHHHHHHHHHH--hCCCEEEEEc
Confidence 356788888876 7888777776554321 11222 111244444333 24677788777 5889999998
Q ss_pred cCH--hhHHHHHHcCCeEEEeCC
Q 021360 173 DSV--IGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 173 D~~--~Di~~a~~~G~~~i~v~~ 193 (313)
-.. |=+..+++.|+++++++.
T Consensus 104 tElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 104 TELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp ----HHHHHH-----S-EEEEEE
T ss_pred cccCHHHHHHHhhcCCCEEEEee
Confidence 877 678889999999999987
No 276
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=52.76 E-value=1.4e+02 Score=25.21 Aligned_cols=97 Identities=10% Similarity=0.142 Sum_probs=62.2
Q ss_pred CCCCchHHHHHHHHHHC---CCCEEEEeCCchHHHHHHHHhhcCCccccceEEe-cCCCC--CCCCChHHHHHHHHHcCC
Q 021360 90 VKALPGANRLIKHLSCH---GVPMALASNSHRATIESKISYQHGWNESFSVIVG-SDEVR--TGKPSPDIFLEAAKRLNM 163 (313)
Q Consensus 90 ~~~~pgv~e~l~~l~~~---g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~-~~~~~--~~kp~~~~~~~~~~~~~~ 163 (313)
-.++|+..++++..+.. |+.+.-+++.+....++.. .+|- +.+-. +...+ .+-.+++.++.+.+..++
T Consensus 103 ~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~--~~G~----~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~v 176 (248)
T cd04728 103 KTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLE--DAGC----AAVMPLGSPIGSGQGLLNPYNLRIIIERADV 176 (248)
T ss_pred cccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH--HcCC----CEeCCCCcCCCCCCCCCCHHHHHHHHHhCCC
Confidence 45678888888877776 9988845656555555443 3455 44322 12222 334457888877666433
Q ss_pred CCCcEEEEec---CHhhHHHHHHcCCeEEEeCCCCC
Q 021360 164 EPSSSLVIED---SVIGVVAGKAAGMEVVAVPSLPK 196 (313)
Q Consensus 164 ~~~~~i~vgD---~~~Di~~a~~~G~~~i~v~~~~~ 196 (313)
+ ++++- ++.|...+.+.|...+++.+...
T Consensus 177 p----VI~egGI~tpeda~~AmelGAdgVlV~SAIt 208 (248)
T cd04728 177 P----VIVDAGIGTPSDAAQAMELGADAVLLNTAIA 208 (248)
T ss_pred c----EEEeCCCCCHHHHHHHHHcCCCEEEEChHhc
Confidence 3 44443 35799999999999999988543
No 277
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=52.12 E-value=27 Score=28.16 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=29.7
Q ss_pred CCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHH
Q 021360 92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKI 125 (313)
Q Consensus 92 ~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l 125 (313)
+.+.+.+.|++|++.|..++++|+++...+...+
T Consensus 18 ~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~ 51 (204)
T TIGR01484 18 LSPETIEALERLREAGVKVVLVTGRSLAEIKELL 51 (204)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH
Confidence 4467889999999999999999999999888777
No 278
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=51.49 E-value=1e+02 Score=29.42 Aligned_cols=88 Identities=7% Similarity=0.032 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecC
Q 021360 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDS 174 (313)
Q Consensus 95 gv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~vgD~ 174 (313)
++...|...+..+-++++++-.....--..+.+.+++.- +..... ..-+......-+++.|++ ++|||.
T Consensus 85 Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~i--~~~~~~-----~~~e~~~~~~~l~~~G~~----~viG~~ 153 (526)
T TIGR02329 85 DVMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLDI--VQRSYV-----TEEDARSCVNDLRARGIG----AVVGAG 153 (526)
T ss_pred hHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCce--EEEEec-----CHHHHHHHHHHHHHCCCC----EEECCh
Confidence 455556666666678888876543332223335555521 111111 111112222233445666 778998
Q ss_pred HhhHHHHHHcCCeEEEeCCC
Q 021360 175 VIGVVAGKAAGMEVVAVPSL 194 (313)
Q Consensus 175 ~~Di~~a~~~G~~~i~v~~~ 194 (313)
.. ...|+++|++.+.+.++
T Consensus 154 ~~-~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 154 LI-TDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HH-HHHHHHcCCceEEEecH
Confidence 54 78899999999999774
No 279
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=50.51 E-value=1.8e+02 Score=25.75 Aligned_cols=96 Identities=9% Similarity=0.112 Sum_probs=64.3
Q ss_pred CCCCchHHHHHHHHHHC---CCCEEEEeCCchHHHHHHHHhhcCCccccceEEe-cCCCC--CCCCChHHHHHHHHHcCC
Q 021360 90 VKALPGANRLIKHLSCH---GVPMALASNSHRATIESKISYQHGWNESFSVIVG-SDEVR--TGKPSPDIFLEAAKRLNM 163 (313)
Q Consensus 90 ~~~~pgv~e~l~~l~~~---g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~-~~~~~--~~kp~~~~~~~~~~~~~~ 163 (313)
..+.|+..++++..+.. |+.+..+++.+....++.. .+|- -.+-. +...+ .+-.+|+.++.+.+...+
T Consensus 177 ~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~--~~g~----~avmPl~~pIGsg~gv~~p~~i~~~~e~~~v 250 (326)
T PRK11840 177 KTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLE--DAGA----VAVMPLGAPIGSGLGIQNPYTIRLIVEGATV 250 (326)
T ss_pred CCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH--hcCC----EEEeeccccccCCCCCCCHHHHHHHHHcCCC
Confidence 45678888888877776 9998666666655555443 3343 22222 22222 333478999999888443
Q ss_pred CCCcEEEEecCH---hhHHHHHHcCCeEEEeCCCC
Q 021360 164 EPSSSLVIEDSV---IGVVAGKAAGMEVVAVPSLP 195 (313)
Q Consensus 164 ~~~~~i~vgD~~---~Di~~a~~~G~~~i~v~~~~ 195 (313)
+ +++|-+. .|...|-++|...+.+++..
T Consensus 251 p----VivdAGIg~~sda~~AmelGadgVL~nSaI 281 (326)
T PRK11840 251 P----VLVDAGVGTASDAAVAMELGCDGVLMNTAI 281 (326)
T ss_pred c----EEEeCCCCCHHHHHHHHHcCCCEEEEccee
Confidence 3 5666554 79999999999999998854
No 280
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=50.30 E-value=1e+02 Score=22.70 Aligned_cols=86 Identities=13% Similarity=-0.057 Sum_probs=42.6
Q ss_pred HHHHHHHCCCCEEEEeC-CchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecCHh-
Q 021360 99 LIKHLSCHGVPMALASN-SHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVI- 176 (313)
Q Consensus 99 ~l~~l~~~g~~~~i~s~-~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~- 176 (313)
+-..++..|+.+..... .+.+.+-... ...+. +.+..+.......+....+.+.+++.+.+.-.+++.|..+.
T Consensus 19 ~~~~l~~~G~~vi~lG~~vp~e~~~~~a-~~~~~----d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~ 93 (122)
T cd02071 19 IARALRDAGFEVIYTGLRQTPEEIVEAA-IQEDV----DVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPE 93 (122)
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHH-HHcCC----CEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHH
Confidence 34456778887765542 2333332233 23344 66655543333333333333444444444223444554554
Q ss_pred hHHHHHHcCCeEE
Q 021360 177 GVVAGKAAGMEVV 189 (313)
Q Consensus 177 Di~~a~~~G~~~i 189 (313)
+.+.++++|+..+
T Consensus 94 ~~~~~~~~G~d~~ 106 (122)
T cd02071 94 DYELLKEMGVAEI 106 (122)
T ss_pred HHHHHHHCCCCEE
Confidence 5777888897543
No 281
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=49.61 E-value=74 Score=25.56 Aligned_cols=98 Identities=14% Similarity=0.157 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHHHhhh---ccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHh----hcCCccccceEEecC
Q 021360 70 CAKHEFVNEVYSMFSDHL---CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISY----QHGWNESFSVIVGSD 142 (313)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~---~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~----~~~~~~~f~~v~~~~ 142 (313)
.|.......+.+.++-.. -+.++.| .+|..+++.|++++++...-.+........ .-.+...|+.+.+.+
T Consensus 81 ~D~~~~~~rfl~~~~P~~~i~~EtElWP---nll~~a~~~~ip~~LvNarls~~s~~~~~~~~~~~r~~l~~f~~i~aqs 157 (186)
T PF04413_consen 81 LDFPWAVRRFLDHWRPDLLIWVETELWP---NLLREAKRRGIPVVLVNARLSERSFRRYRRFPFLFRPLLSRFDRILAQS 157 (186)
T ss_dssp -SSHHHHHHHHHHH--SEEEEES----H---HHHHH-----S-EEEEEE--------------HHHHHHGGG-SEEEESS
T ss_pred ccCHHHHHHHHHHhCCCEEEEEccccCH---HHHHHHhhcCCCEEEEeeeeccccchhhhhhHHHHHHHHHhCCEEEECC
Confidence 444444455545444322 3566777 677788999999999876543221111100 012334457777654
Q ss_pred CCCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHH
Q 021360 143 EVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVV 179 (313)
Q Consensus 143 ~~~~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~ 179 (313)
+ + -.+-+.++|.+++++.+.||--.|..
T Consensus 158 ~--------~-da~r~~~lG~~~~~v~v~GnlKfd~~ 185 (186)
T PF04413_consen 158 E--------A-DAERFRKLGAPPERVHVTGNLKFDQA 185 (186)
T ss_dssp H--------H-HHHHHHTTT-S--SEEE---GGG---
T ss_pred H--------H-HHHHHHHcCCCcceEEEeCcchhccc
Confidence 3 2 23445688999999999999777653
No 282
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=49.31 E-value=32 Score=28.24 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=31.2
Q ss_pred CCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHH--hhcCC
Q 021360 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKIS--YQHGW 131 (313)
Q Consensus 91 ~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~--~~~~~ 131 (313)
...|+..+.|++|+..+.++-++||...+.-+.+.+ .++|+
T Consensus 23 ~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf 65 (262)
T KOG3040|consen 23 AAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGF 65 (262)
T ss_pred ccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCC
Confidence 478999999999999999999999987655433331 44555
No 283
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=48.26 E-value=40 Score=26.72 Aligned_cols=84 Identities=14% Similarity=0.121 Sum_probs=43.2
Q ss_pred HHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHH---cCCCCCcEEEEe
Q 021360 96 ANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKR---LNMEPSSSLVIE 172 (313)
Q Consensus 96 v~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~---~~~~~~~~i~vg 172 (313)
+.+.|..++..+-++++++..+.-.--..+.+.+|+ +......+ +++-+...+++ .|++ +++|
T Consensus 66 il~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~----~i~~~~~~------~~~e~~~~i~~~~~~G~~----viVG 131 (176)
T PF06506_consen 66 ILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGV----DIKIYPYD------SEEEIEAAIKQAKAEGVD----VIVG 131 (176)
T ss_dssp HHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-----EEEEEEES------SHHHHHHHHHHHHHTT------EEEE
T ss_pred HHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCC----ceEEEEEC------CHHHHHHHHHHHHHcCCc----EEEC
Confidence 344444445556677777755432211223245565 32222111 13444555444 3555 6777
Q ss_pred cCHhhHHHHHHcCCeEEEeCCC
Q 021360 173 DSVIGVVAGKAAGMEVVAVPSL 194 (313)
Q Consensus 173 D~~~Di~~a~~~G~~~i~v~~~ 194 (313)
++.. ...|++.|++++.+.++
T Consensus 132 g~~~-~~~A~~~gl~~v~i~sg 152 (176)
T PF06506_consen 132 GGVV-CRLARKLGLPGVLIESG 152 (176)
T ss_dssp SHHH-HHHHHHTTSEEEESS--
T ss_pred CHHH-HHHHHHcCCcEEEEEec
Confidence 7764 78899999999998773
No 284
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=48.23 E-value=96 Score=28.66 Aligned_cols=60 Identities=17% Similarity=0.051 Sum_probs=41.8
Q ss_pred ccCCCCchHHHHHHHHHHCCC-CEEEEeCCc-----hHHHHHHHHhhcCCccccceEEecCCCCCCCCChHH
Q 021360 88 CKVKALPGANRLIKHLSCHGV-PMALASNSH-----RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI 153 (313)
Q Consensus 88 ~~~~~~pgv~e~l~~l~~~g~-~~~i~s~~~-----~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~ 153 (313)
.+..+..++.++++..++.|+ .+.+.||+- .++++ .+ +..|+ ..++.++|--..++....
T Consensus 119 GEPTvr~DL~eiv~~a~e~g~~hVqinTnGirlA~~~~~~~-~l-~~ag~----~tvYlsFDG~~e~~~~~~ 184 (475)
T COG1964 119 GEPTLRDDLIEIIKIAREEGYDHVQLNTNGIRLAFDPEYVK-KL-REAGV----NTVYLSFDGVTPKTNWKN 184 (475)
T ss_pred CCccchhhHHHHHHHHhhcCccEEEEccCceeeccCHHHHH-HH-HhcCC----cEEEEecCCCCCCchhhH
Confidence 356788899999999999998 566777763 34443 34 44565 677777776666666555
No 285
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=47.93 E-value=2e+02 Score=25.58 Aligned_cols=93 Identities=13% Similarity=0.084 Sum_probs=56.8
Q ss_pred chHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHH--HHHHHHHcC--CCCCcEE
Q 021360 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI--FLEAAKRLN--MEPSSSL 169 (313)
Q Consensus 94 pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~--~~~~~~~~~--~~~~~~i 169 (313)
+.+.+..+.|... ..++++-......++... +...+ -. +-+.+ ....|.... +..+.+.+| ++.-.+.
T Consensus 89 Esl~DTarvls~y-~D~iv~R~~~~~~~~~~a-~~~~v----PV-INa~~-~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia 160 (334)
T PRK01713 89 ESMKDTARVLGRM-YDAIEYRGFKQSIVNELA-EYAGV----PV-FNGLT-DEFHPTQMLADVLTMIENCDKPLSEISYV 160 (334)
T ss_pred cCHHHHHHHHHHh-CCEEEEEcCchHHHHHHH-HhCCC----CE-EECCC-CCCChHHHHHHHHHHHHHcCCCcCCcEEE
Confidence 4567777777776 667777666656555444 54443 33 33322 234443222 223344554 6667899
Q ss_pred EEecCH-----hhHHHHHHcCCeEEEeCCC
Q 021360 170 VIEDSV-----IGVVAGKAAGMEVVAVPSL 194 (313)
Q Consensus 170 ~vgD~~-----~Di~~a~~~G~~~i~v~~~ 194 (313)
++||.. +.+.++..+|+.+..+.+.
T Consensus 161 ~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~ 190 (334)
T PRK01713 161 YIGDARNNMGNSLLLIGAKLGMDVRICAPK 190 (334)
T ss_pred EECCCccCHHHHHHHHHHHcCCEEEEECCc
Confidence 999962 3677789999999888873
No 286
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=46.05 E-value=1.6e+02 Score=23.84 Aligned_cols=86 Identities=13% Similarity=0.104 Sum_probs=45.8
Q ss_pred HHHHHHHCCCCEEEE-eCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhh
Q 021360 99 LIKHLSCHGVPMALA-SNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIG 177 (313)
Q Consensus 99 ~l~~l~~~g~~~~i~-s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~D 177 (313)
+-..++..|+.+..+ .+.+.+.+-..+ +..+. +.+..+.......+....+.+.+++.+..++-.+++|-....
T Consensus 104 v~~~l~~~G~~vi~LG~~vp~e~~v~~~-~~~~p----d~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG~~~~ 178 (197)
T TIGR02370 104 VVTMLRANGFDVIDLGRDVPIDTVVEKV-KKEKP----LMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMVGGAPVT 178 (197)
T ss_pred HHHHHHhCCcEEEECCCCCCHHHHHHHH-HHcCC----CEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEEEChhcC
Confidence 345567777777644 333444443344 33444 666555444434443444445556666665545666656654
Q ss_pred HHHHHHcCCeEE
Q 021360 178 VVAGKAAGMEVV 189 (313)
Q Consensus 178 i~~a~~~G~~~i 189 (313)
-.-+++.|....
T Consensus 179 ~~~~~~~gad~~ 190 (197)
T TIGR02370 179 QDWADKIGADVY 190 (197)
T ss_pred HHHHHHhCCcEE
Confidence 456777776543
No 287
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=45.86 E-value=51 Score=27.68 Aligned_cols=38 Identities=8% Similarity=-0.014 Sum_probs=30.1
Q ss_pred chHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCc
Q 021360 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (313)
Q Consensus 94 pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~ 132 (313)
|.+.+++++++++|..++++|+.+...+...+ +.+++.
T Consensus 24 ~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~-~~~~~~ 61 (249)
T TIGR01485 24 LRLNALLEDHRGEDSLLVYSTGRSPHSYKELQ-KQKPLL 61 (249)
T ss_pred HHHHHHHHHhhccCceEEEEcCCCHHHHHHHH-hcCCCC
Confidence 35668888899999999999999988887766 555654
No 288
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=44.11 E-value=1.4e+02 Score=22.62 Aligned_cols=86 Identities=12% Similarity=-0.049 Sum_probs=40.5
Q ss_pred HHHHHHCCCCEEEEeC-CchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecC----
Q 021360 100 IKHLSCHGVPMALASN-SHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDS---- 174 (313)
Q Consensus 100 l~~l~~~g~~~~i~s~-~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~vgD~---- 174 (313)
...|+..|+.++.+-. .+.+.+.... ...+. +.+..+.-.....+....+...+++.+.+.-.+++.|--
T Consensus 24 ~~~lr~~G~eVi~LG~~vp~e~i~~~a-~~~~~----d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~ 98 (137)
T PRK02261 24 DRALTEAGFEVINLGVMTSQEEFIDAA-IETDA----DAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNLVVGK 98 (137)
T ss_pred HHHHHHCCCEEEECCCCCCHHHHHHHH-HHcCC----CEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCc
Confidence 3456677777665542 2333332233 23344 666655544433333333334444444433333444432
Q ss_pred ---HhhHHHHHHcCCeEEE
Q 021360 175 ---VIGVVAGKAAGMEVVA 190 (313)
Q Consensus 175 ---~~Di~~a~~~G~~~i~ 190 (313)
..+.+.++++|+..+.
T Consensus 99 ~~~~~~~~~l~~~G~~~vf 117 (137)
T PRK02261 99 HDFEEVEKKFKEMGFDRVF 117 (137)
T ss_pred cChHHHHHHHHHcCCCEEE
Confidence 2355677888865443
No 289
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=41.71 E-value=24 Score=35.20 Aligned_cols=97 Identities=15% Similarity=0.151 Sum_probs=59.9
Q ss_pred CCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCcc---------------c--------cc-eEEecCCCCC
Q 021360 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE---------------S--------FS-VIVGSDEVRT 146 (313)
Q Consensus 91 ~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~---------------~--------f~-~v~~~~~~~~ 146 (313)
++.+.+.+.+...++.|+++.++|....-..++.. +..|+.. . -+ .|+.+.+.
T Consensus 590 PPR~~vP~Av~~CrsAGIkvimVTgdhpiTAkAiA-~~vgIi~~~~et~e~~a~r~~~~v~~vn~~~a~a~VihG~eL-- 666 (1019)
T KOG0203|consen 590 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIA-KSVGIISEGSETVEDIAKRLNIPVEQVNSRDAKAAVIHGSEL-- 666 (1019)
T ss_pred CCcccCchhhhhhhhhCceEEEEecCccchhhhhh-hheeeecCCchhhhhhHHhcCCcccccCccccceEEEecccc--
Confidence 45677888999999999999999877554444333 3333110 0 01 23333332
Q ss_pred CCCChHHHHHHHHHcC------CCCC-------------c-EEEEecCHhhHHHHHHcCCeEEE
Q 021360 147 GKPSPDIFLEAAKRLN------MEPS-------------S-SLVIEDSVIGVVAGKAAGMEVVA 190 (313)
Q Consensus 147 ~kp~~~~~~~~~~~~~------~~~~-------------~-~i~vgD~~~Di~~a~~~G~~~i~ 190 (313)
..-.++.+.++++... .+|+ + +-+.||+.||-.+.+++.+.+.+
T Consensus 667 ~~~~~~qld~il~nh~eIVFARTSPqQKLiIVe~cQr~GaiVaVTGDGVNDsPALKKADIGVAM 730 (1019)
T KOG0203|consen 667 PDMSSEQLDELLQNHQEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAM 730 (1019)
T ss_pred cccCHHHHHHHHHhCCceEEEecCccceEEeEhhhhhcCcEEEEeCCCcCCChhhcccccceee
Confidence 2223456666665433 2232 2 44569999999999999998777
No 290
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=40.80 E-value=34 Score=29.63 Aligned_cols=47 Identities=26% Similarity=0.347 Sum_probs=36.9
Q ss_pred CCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHH------HHcCCeEEEe
Q 021360 145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAG------KAAGMEVVAV 191 (313)
Q Consensus 145 ~~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a------~~~G~~~i~v 191 (313)
...-|+++.|...+.++|++.+..+++.|..+...++ +-+|..=+.+
T Consensus 69 ~~~lp~~e~fa~~~~~~GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~i 121 (285)
T COG2897 69 PHMLPSPEQFAKLLGELGIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRI 121 (285)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEE
Confidence 4667889999999999999999999998887776664 5567764333
No 291
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=40.62 E-value=1.1e+02 Score=27.04 Aligned_cols=90 Identities=17% Similarity=0.224 Sum_probs=54.7
Q ss_pred ccCCCCchHHHHHHHHHHC----CCCEEEEeCCchH--HH-HHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHH
Q 021360 88 CKVKALPGANRLIKHLSCH----GVPMALASNSHRA--TI-ESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKR 160 (313)
Q Consensus 88 ~~~~~~pgv~e~l~~l~~~----g~~~~i~s~~~~~--~~-~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~ 160 (313)
..-.+.|++.+.++.|.+. .++.+++||+.-- .. ...+.+.+|+.- +.+++-... .-|+...
T Consensus 48 RG~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~V------s~dqviqSH---sP~r~l~-- 116 (389)
T KOG1618|consen 48 RGHRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVEV------SADQVIQSH---SPFRLLV-- 116 (389)
T ss_pred ecCCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCcc------CHHHHHhhc---ChHHHHh--
Confidence 3457889999999999887 7999999987421 11 223345555532 222222111 1233332
Q ss_pred cCCCCCcEEEEecCHhhHHHHHHcCCeEEE
Q 021360 161 LNMEPSSSLVIEDSVIGVVAGKAAGMEVVA 190 (313)
Q Consensus 161 ~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~ 190 (313)
....++++++|+.. -.+-|+..|++-+.
T Consensus 117 -~~~~k~vLv~G~~~-vr~vAegyGFk~Vv 144 (389)
T KOG1618|consen 117 -EYHYKRVLVVGQGS-VREVAEGYGFKNVV 144 (389)
T ss_pred -hhhhceEEEecCCc-HHHHhhccCcccee
Confidence 25677899999543 34557888887544
No 292
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=39.59 E-value=2.4e+02 Score=24.06 Aligned_cols=96 Identities=10% Similarity=0.099 Sum_probs=65.0
Q ss_pred CCCCchHHHHH---HHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEE-ecCCCC--CCCCChHHHHHHHHHcCC
Q 021360 90 VKALPGANRLI---KHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIV-GSDEVR--TGKPSPDIFLEAAKRLNM 163 (313)
Q Consensus 90 ~~~~pgv~e~l---~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~-~~~~~~--~~kp~~~~~~~~~~~~~~ 163 (313)
-.++|+..+++ +.|-+.|+.+.-+++.+....+ .| +..|- ..|- .+...+ .+-.++..++.+.+...+
T Consensus 117 ~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~v~a~-rL-ed~Gc----~aVMPlgsPIGSg~Gl~n~~~l~~i~e~~~v 190 (267)
T CHL00162 117 KYLLPDPIGTLKAAEFLVKKGFTVLPYINADPMLAK-HL-EDIGC----ATVMPLGSPIGSGQGLQNLLNLQIIIENAKI 190 (267)
T ss_pred cccCCChHHHHHHHHHHHHCCCEEeecCCCCHHHHH-HH-HHcCC----eEEeeccCcccCCCCCCCHHHHHHHHHcCCC
Confidence 35677777766 5566789999888888776655 34 34554 3322 222333 445578888888877654
Q ss_pred CCCcEEEEecCH---hhHHHHHHcCCeEEEeCCCC
Q 021360 164 EPSSSLVIEDSV---IGVVAGKAAGMEVVAVPSLP 195 (313)
Q Consensus 164 ~~~~~i~vgD~~---~Di~~a~~~G~~~i~v~~~~ 195 (313)
+ +++|-+. +|...|-+.|...+.+++..
T Consensus 191 p----VivdAGIgt~sDa~~AmElGaDgVL~nSaI 221 (267)
T CHL00162 191 P----VIIDAGIGTPSEASQAMELGASGVLLNTAV 221 (267)
T ss_pred c----EEEeCCcCCHHHHHHHHHcCCCEEeeccee
Confidence 4 5555544 79999999999999998853
No 293
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=39.40 E-value=28 Score=23.72 Aligned_cols=18 Identities=28% Similarity=0.661 Sum_probs=15.2
Q ss_pred cEEEEecCCccccChHHH
Q 021360 10 SCVILDLDGTLLNTDGMF 27 (313)
Q Consensus 10 k~vifDlDGTL~d~~~~~ 27 (313)
-.|+++-|||.+|++..+
T Consensus 40 ~~lvLeeDGT~Vd~EeyF 57 (81)
T cd06537 40 LTLVLEEDGTAVDSEDFF 57 (81)
T ss_pred eEEEEecCCCEEccHHHH
Confidence 568999999999988655
No 294
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=39.11 E-value=1.2e+02 Score=25.48 Aligned_cols=45 Identities=20% Similarity=0.244 Sum_probs=35.5
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEecCHh--hHHHHHHcCCeEEEeCC
Q 021360 146 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSVI--GVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 146 ~~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~--Di~~a~~~G~~~i~v~~ 193 (313)
...|.|..-++++...|++ |++|+|.+. .....++.|+..+.+..
T Consensus 70 ~~~PGP~~ARE~l~~~~iP---~IvI~D~p~~k~kd~l~~~g~GYIivk~ 116 (276)
T PF01993_consen 70 AAAPGPTKAREMLSAKGIP---CIVISDAPTKKAKDALEEEGFGYIIVKA 116 (276)
T ss_dssp TTSHHHHHHHHHHHHSSS----EEEEEEGGGGGGHHHHHHTT-EEEEETT
T ss_pred CCCCCcHHHHHHHHhCCCC---EEEEcCCCchhhHHHHHhcCCcEEEEec
Confidence 3567788888888887877 999999993 67888999999888876
No 295
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=38.99 E-value=1.9e+02 Score=27.66 Aligned_cols=87 Identities=10% Similarity=0.039 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecC
Q 021360 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDS 174 (313)
Q Consensus 95 gv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~vgD~ 174 (313)
++.+.|...+..+-++++++-......-..+.+.+++ +...... . ..-+......-+++.|++ ++|||.
T Consensus 95 Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~----~i~~~~~--~-~~~e~~~~v~~lk~~G~~----~vvG~~ 163 (538)
T PRK15424 95 DVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNL----RIEQRSY--V-TEEDARGQINELKANGIE----AVVGAG 163 (538)
T ss_pred HHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCC----ceEEEEe--c-CHHHHHHHHHHHHHCCCC----EEEcCc
Confidence 4555566666666788888765433322233355555 2211111 0 111112222333455666 778987
Q ss_pred HhhHHHHHHcCCeEEEeCC
Q 021360 175 VIGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 175 ~~Di~~a~~~G~~~i~v~~ 193 (313)
.. ...|.++|+..+.+.+
T Consensus 164 ~~-~~~A~~~g~~g~~~~s 181 (538)
T PRK15424 164 LI-TDLAEEAGMTGIFIYS 181 (538)
T ss_pred hH-HHHHHHhCCceEEecC
Confidence 66 7899999999888875
No 296
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=38.46 E-value=29 Score=23.23 Aligned_cols=19 Identities=26% Similarity=0.600 Sum_probs=15.2
Q ss_pred ccEEEEecCCccccChHHH
Q 021360 9 MSCVILDLDGTLLNTDGMF 27 (313)
Q Consensus 9 ~k~vifDlDGTL~d~~~~~ 27 (313)
.-.|+++-|||.++++..+
T Consensus 38 ~~~l~L~eDGT~VddEeyF 56 (74)
T smart00266 38 PVTLVLEEDGTIVDDEEYF 56 (74)
T ss_pred CcEEEEecCCcEEccHHHH
Confidence 3468899999999987654
No 297
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=38.18 E-value=30 Score=23.40 Aligned_cols=19 Identities=32% Similarity=0.749 Sum_probs=15.4
Q ss_pred ccEEEEecCCccccChHHH
Q 021360 9 MSCVILDLDGTLLNTDGMF 27 (313)
Q Consensus 9 ~k~vifDlDGTL~d~~~~~ 27 (313)
.-.++++-|||.+|++..+
T Consensus 40 ~~~lvL~eDGT~Vd~EeyF 58 (78)
T cd06539 40 LVTLVLEEDGTVVDTEEFF 58 (78)
T ss_pred CcEEEEeCCCCEEccHHHH
Confidence 3568899999999988654
No 298
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=38.13 E-value=2.4e+02 Score=23.64 Aligned_cols=73 Identities=15% Similarity=0.241 Sum_probs=48.6
Q ss_pred chHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEE--E
Q 021360 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV--I 171 (313)
Q Consensus 94 pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~--v 171 (313)
|-+....++..+.|...+++...+++.. ... ..+|. ..+.++.+...+. +.+.+++++++++..++++ =
T Consensus 29 pmI~rV~e~a~~s~~~rvvVATDde~I~-~av-~~~G~----~avmT~~~h~SGT---dR~~Ev~~~l~~~~~~iIVNvQ 99 (247)
T COG1212 29 PMIVRVAERALKSGADRVVVATDDERIA-EAV-QAFGG----EAVMTSKDHQSGT---DRLAEVVEKLGLPDDEIIVNVQ 99 (247)
T ss_pred hHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHH-HHhCC----EEEecCCCCCCcc---HHHHHHHHhcCCCcceEEEEcc
Confidence 4556666667666665555544444433 344 45677 8888888776554 7888899999988777665 2
Q ss_pred ecCH
Q 021360 172 EDSV 175 (313)
Q Consensus 172 gD~~ 175 (313)
||-+
T Consensus 100 GDeP 103 (247)
T COG1212 100 GDEP 103 (247)
T ss_pred CCCC
Confidence 8876
No 299
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=37.98 E-value=2.3e+02 Score=26.89 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=23.5
Q ss_pred CCcEEEEecCHhhHHHHH---HcCCeEEEeCC
Q 021360 165 PSSSLVIEDSVIGVVAGK---AAGMEVVAVPS 193 (313)
Q Consensus 165 ~~~~i~vgD~~~Di~~a~---~~G~~~i~v~~ 193 (313)
.-++++||-++.++.+|. +.|.+++++..
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~ 242 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE 242 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 457999999999999864 55888888854
No 300
>PRK00208 thiG thiazole synthase; Reviewed
Probab=37.74 E-value=2.5e+02 Score=23.78 Aligned_cols=97 Identities=9% Similarity=0.116 Sum_probs=61.2
Q ss_pred CCCCchHHHHHHHHHHC---CCCEEEEeCCchHHHHHHHHhhcCCccccceEEe-cCCCC--CCCCChHHHHHHHHHcCC
Q 021360 90 VKALPGANRLIKHLSCH---GVPMALASNSHRATIESKISYQHGWNESFSVIVG-SDEVR--TGKPSPDIFLEAAKRLNM 163 (313)
Q Consensus 90 ~~~~pgv~e~l~~l~~~---g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~-~~~~~--~~kp~~~~~~~~~~~~~~ 163 (313)
-.+.|+..++++..+.. |+.+.-+++.+....++.. .+|- +.+-. +...+ .+-.+++.++.+.+..++
T Consensus 103 ~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~--~~G~----~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~v 176 (250)
T PRK00208 103 KTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLE--EAGC----AAVMPLGAPIGSGLGLLNPYNLRIIIEQADV 176 (250)
T ss_pred CCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH--HcCC----CEeCCCCcCCCCCCCCCCHHHHHHHHHhcCC
Confidence 34578888888777776 9988845555555555433 3455 44321 12222 233357887777766443
Q ss_pred CCCcEEEEecC---HhhHHHHHHcCCeEEEeCCCCC
Q 021360 164 EPSSSLVIEDS---VIGVVAGKAAGMEVVAVPSLPK 196 (313)
Q Consensus 164 ~~~~~i~vgD~---~~Di~~a~~~G~~~i~v~~~~~ 196 (313)
+ ++++-+ +.|...+-+.|...+++.+...
T Consensus 177 p----VIveaGI~tpeda~~AmelGAdgVlV~SAIt 208 (250)
T PRK00208 177 P----VIVDAGIGTPSDAAQAMELGADAVLLNTAIA 208 (250)
T ss_pred e----EEEeCCCCCHHHHHHHHHcCCCEEEEChHhh
Confidence 3 444433 4799999999999999998543
No 301
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=37.71 E-value=2.3e+02 Score=26.83 Aligned_cols=67 Identities=19% Similarity=0.308 Sum_probs=39.1
Q ss_pred hhcCCccccceEEecCCCCCCCCChHHHHHHHHHc----------CCCCCcEEEEecCHhhHHHH---HHcCCeEEEeCC
Q 021360 127 YQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL----------NMEPSSSLVIEDSVIGVVAG---KAAGMEVVAVPS 193 (313)
Q Consensus 127 ~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~----------~~~~~~~i~vgD~~~Di~~a---~~~G~~~i~v~~ 193 (313)
+++++...-..++.+.....+++..+.+...+... .....++++||-++.++.+| .+.|.++.++..
T Consensus 164 ~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~ 243 (515)
T TIGR03140 164 EALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASALEQLDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE 243 (515)
T ss_pred HhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccchhccccCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 34444422233333333444555555554443321 24456899999999999985 455888887753
No 302
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=36.01 E-value=1.9e+02 Score=25.76 Aligned_cols=91 Identities=12% Similarity=0.087 Sum_probs=51.9
Q ss_pred HHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCCh-HHHHHH---HH-HcCCCCCcEEE
Q 021360 96 ANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSP-DIFLEA---AK-RLNMEPSSSLV 170 (313)
Q Consensus 96 v~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~-~~~~~~---~~-~~~~~~~~~i~ 170 (313)
...++++|.+.|+.+.+.+- ....+..++ +.+|+ +.+..|........+. ....+. ++ ...++|+ +++
T Consensus 16 Fk~~I~eL~~~GheV~it~R-~~~~~~~LL-~~yg~----~y~~iG~~g~~~~~Kl~~~~~R~~~l~~~~~~~~pD-v~i 88 (335)
T PF04007_consen 16 FKNIIRELEKRGHEVLITAR-DKDETEELL-DLYGI----DYIVIGKHGDSLYGKLLESIERQYKLLKLIKKFKPD-VAI 88 (335)
T ss_pred HHHHHHHHHhCCCEEEEEEe-ccchHHHHH-HHcCC----CeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHhhCCC-EEE
Confidence 45788999999998766554 445555566 78888 7776654332111110 111111 11 1123443 333
Q ss_pred EecCHhhHHHHHHcCCeEEEeCC
Q 021360 171 IEDSVIGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 171 vgD~~~Di~~a~~~G~~~i~v~~ 193 (313)
-..|+.=...|.-.|++++.+..
T Consensus 89 s~~s~~a~~va~~lgiP~I~f~D 111 (335)
T PF04007_consen 89 SFGSPEAARVAFGLGIPSIVFND 111 (335)
T ss_pred ecCcHHHHHHHHHhCCCeEEEec
Confidence 44455555688999999888876
No 303
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=35.65 E-value=2.6e+02 Score=24.75 Aligned_cols=95 Identities=16% Similarity=0.180 Sum_probs=52.6
Q ss_pred HHHHHHHHHHC-CCC-EEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHH---HHHHHHHcCCCCCcEEE
Q 021360 96 ANRLIKHLSCH-GVP-MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI---FLEAAKRLNMEPSSSLV 170 (313)
Q Consensus 96 v~e~l~~l~~~-g~~-~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~---~~~~~~~~~~~~~~~i~ 170 (313)
+..+++.|++. ++. ..++|+.........+ +.+++...++..+.+......+--... +.+++++ .+|+=++.
T Consensus 16 ~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~pDiv~~ 92 (365)
T TIGR00236 16 MAPLIRALKKYPEIDSYVIVTAQHREMLDQVL-DLFHLPPDYDLNIMSPGQTLGEITSNMLEGLEELLLE--EKPDIVLV 92 (365)
T ss_pred HHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHH-HhcCCCCCeeeecCCCCCCHHHHHHHHHHHHHHHHHH--cCCCEEEE
Confidence 45677778764 444 4566776666555555 457875433333322111111111122 2333333 46777778
Q ss_pred EecCHhh---HHHHHHcCCeEEEeCC
Q 021360 171 IEDSVIG---VVAGKAAGMEVVAVPS 193 (313)
Q Consensus 171 vgD~~~D---i~~a~~~G~~~i~v~~ 193 (313)
.||.... ..+|+..|++++.+..
T Consensus 93 ~gd~~~~la~a~aa~~~~ipv~h~~~ 118 (365)
T TIGR00236 93 QGDTTTTLAGALAAFYLQIPVGHVEA 118 (365)
T ss_pred eCCchHHHHHHHHHHHhCCCEEEEeC
Confidence 8997653 4557888999987754
No 304
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=35.42 E-value=41 Score=28.03 Aligned_cols=11 Identities=55% Similarity=0.751 Sum_probs=7.4
Q ss_pred EEecCCccccC
Q 021360 13 ILDLDGTLLNT 23 (313)
Q Consensus 13 ifDlDGTL~d~ 23 (313)
+||+||||.+.
T Consensus 1 ~lDyDGTL~p~ 11 (235)
T PF02358_consen 1 FLDYDGTLAPI 11 (235)
T ss_dssp EEE-TTTSS--
T ss_pred CcccCCccCCC
Confidence 68999999965
No 305
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=35.06 E-value=3.3e+02 Score=24.29 Aligned_cols=94 Identities=13% Similarity=0.057 Sum_probs=56.7
Q ss_pred CchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChH--HHHHHHHHcC---CCCCc
Q 021360 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPD--IFLEAAKRLN---MEPSS 167 (313)
Q Consensus 93 ~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~--~~~~~~~~~~---~~~~~ 167 (313)
-+.+.+..+.|... +..+++-......+.... +...+ -.|=.+.+ ...|... .+..+.+++| ++.-.
T Consensus 87 gEsl~Dtarvls~y-~D~iviR~~~~~~~~~~a-~~~~v----PVINa~~~--~~HPtQaLaDl~Ti~e~~g~~~l~gl~ 158 (334)
T PRK12562 87 KESIKDTARVLGRM-YDGIQYRGHGQEVVETLA-EYAGV----PVWNGLTN--EFHPTQLLADLLTMQEHLPGKAFNEMT 158 (334)
T ss_pred CcCHHHHHHHHHHh-CCEEEEECCchHHHHHHH-HhCCC----CEEECCCC--CCChHHHHHHHHHHHHHhCCCCcCCcE
Confidence 35677777777777 666676666666555444 54443 33333222 2333321 1233345664 66678
Q ss_pred EEEEecCH-----hhHHHHHHcCCeEEEeCCC
Q 021360 168 SLVIEDSV-----IGVVAGKAAGMEVVAVPSL 194 (313)
Q Consensus 168 ~i~vgD~~-----~Di~~a~~~G~~~i~v~~~ 194 (313)
+.++||.. +.+.++..+|+.+..+.+.
T Consensus 159 va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~ 190 (334)
T PRK12562 159 LVYAGDARNNMGNSMLEAAALTGLDLRLVAPQ 190 (334)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCEEEEECCc
Confidence 99999952 4567788999998888873
No 306
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=34.76 E-value=36 Score=23.08 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=14.7
Q ss_pred cEEEEecCCccccChHHH
Q 021360 10 SCVILDLDGTLLNTDGMF 27 (313)
Q Consensus 10 k~vifDlDGTL~d~~~~~ 27 (313)
-.|+++-|||.++++..+
T Consensus 41 ~~lvL~eDGTeVddEeYF 58 (78)
T cd01615 41 VTLVLEEDGTEVDDEEYF 58 (78)
T ss_pred eEEEEeCCCcEEccHHHH
Confidence 458899999999987654
No 307
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=34.16 E-value=3.2e+02 Score=23.95 Aligned_cols=81 Identities=15% Similarity=0.108 Sum_probs=45.8
Q ss_pred CCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcC-CCCCcEEEEecCHh----hHHHHH
Q 021360 108 VPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN-MEPSSSLVIEDSVI----GVVAGK 182 (313)
Q Consensus 108 ~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~-~~~~~~i~vgD~~~----Di~~a~ 182 (313)
+..+.+-.-....++... +..++ -.+=.-.|..++.---..+..+.+++| +....+.++||+-| =+.++.
T Consensus 100 ~D~I~~R~~~~~~ve~lA-~~s~V----PViNgLtD~~HP~Q~LADl~Ti~E~~g~l~g~k~a~vGDgNNv~nSl~~~~a 174 (310)
T COG0078 100 VDAIMIRGFSHETLEELA-KYSGV----PVINGLTDEFHPCQALADLMTIKEHFGSLKGLKLAYVGDGNNVANSLLLAAA 174 (310)
T ss_pred hheEEEecccHHHHHHHH-HhCCC----ceEcccccccCcHHHHHHHHHHHHhcCcccCcEEEEEcCcchHHHHHHHHHH
Confidence 334445444555555444 55444 222222222222212234555666777 68889999999943 134588
Q ss_pred HcCCeEEEeCC
Q 021360 183 AAGMEVVAVPS 193 (313)
Q Consensus 183 ~~G~~~i~v~~ 193 (313)
.+|+.+..+.+
T Consensus 175 ~~G~dv~ia~P 185 (310)
T COG0078 175 KLGMDVRIATP 185 (310)
T ss_pred HhCCeEEEECC
Confidence 99999888777
No 308
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=34.14 E-value=3.2e+02 Score=23.94 Aligned_cols=94 Identities=16% Similarity=0.150 Sum_probs=58.7
Q ss_pred chHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCCh--HHHHHHHHHcC-CCCCcEEE
Q 021360 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSP--DIFLEAAKRLN-MEPSSSLV 170 (313)
Q Consensus 94 pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~--~~~~~~~~~~~-~~~~~~i~ 170 (313)
+.+.+..+.|...|+.++++-......+.... +...+ -.|=.++. ....|-. ..+..+.+.+| ++.-++.+
T Consensus 88 Es~~Dta~vls~y~~D~iv~R~~~~~~~~~~a-~~~~v----PVINa~~g-~~~HPtQ~LaDl~Ti~e~~G~l~g~kv~~ 161 (305)
T PRK00856 88 ETLADTIRTLSAMGADAIVIRHPQSGAARLLA-ESSDV----PVINAGDG-SHQHPTQALLDLLTIREEFGRLEGLKVAI 161 (305)
T ss_pred cCHHHHHHHHHhcCCCEEEEeCCChHHHHHHH-HHCCC----CEEECCCC-CCCCcHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 46778888888887788887766666665444 44333 33333321 1223321 12333445555 66678999
Q ss_pred EecCH------hhHHHHHHcCCeEEEeCC
Q 021360 171 IEDSV------IGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 171 vgD~~------~Di~~a~~~G~~~i~v~~ 193 (313)
+||.. +-+.++..+|+.+..+.+
T Consensus 162 vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P 190 (305)
T PRK00856 162 VGDIKHSRVARSNIQALTRLGAEVRLIAP 190 (305)
T ss_pred ECCCCCCcHHHHHHHHHHHcCCEEEEECC
Confidence 99962 346778999999888877
No 309
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=34.13 E-value=2.9e+02 Score=23.30 Aligned_cols=96 Identities=9% Similarity=0.151 Sum_probs=65.0
Q ss_pred cCCCCchHHHHH---HHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEe-cCCC--CCCCCChHHHHHHHHHcC
Q 021360 89 KVKALPGANRLI---KHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVG-SDEV--RTGKPSPDIFLEAAKRLN 162 (313)
Q Consensus 89 ~~~~~pgv~e~l---~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~-~~~~--~~~kp~~~~~~~~~~~~~ 162 (313)
.-.+.|+..+++ +.|-+.|+.+.-+++.+.-..++.. ..|- ..+.. +... +.+--++..++.+.++.+
T Consensus 109 ~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLe--e~Gc----aavMPl~aPIGSg~G~~n~~~l~iiie~a~ 182 (262)
T COG2022 109 EKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLE--EAGC----AAVMPLGAPIGSGLGLQNPYNLEIIIEEAD 182 (262)
T ss_pred CcccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHH--hcCc----eEeccccccccCCcCcCCHHHHHHHHHhCC
Confidence 345678877776 4566789988888887776655433 3443 22221 1122 244456789999999987
Q ss_pred CCCCcEEEEecC---HhhHHHHHHcCCeEEEeCCC
Q 021360 163 MEPSSSLVIEDS---VIGVVAGKAAGMEVVAVPSL 194 (313)
Q Consensus 163 ~~~~~~i~vgD~---~~Di~~a~~~G~~~i~v~~~ 194 (313)
++ +.|+-+ ++|...+-+.|+..+.+++-
T Consensus 183 VP----viVDAGiG~pSdAa~aMElG~DaVL~NTA 213 (262)
T COG2022 183 VP----VIVDAGIGTPSDAAQAMELGADAVLLNTA 213 (262)
T ss_pred CC----EEEeCCCCChhHHHHHHhcccceeehhhH
Confidence 77 555544 47999999999999999883
No 310
>PLN02887 hydrolase family protein
Probab=34.09 E-value=1.1e+02 Score=29.73 Aligned_cols=41 Identities=12% Similarity=0.168 Sum_probs=34.2
Q ss_pred CCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCc
Q 021360 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (313)
Q Consensus 91 ~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~ 132 (313)
.+.+...+.|++++++|+.++++|+.+...+...+ +.+++.
T Consensus 325 ~Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l-~~L~l~ 365 (580)
T PLN02887 325 QISETNAKALKEALSRGVKVVIATGKARPAVIDIL-KMVDLA 365 (580)
T ss_pred ccCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHhCcc
Confidence 35677899999999999999999999988887766 666653
No 311
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=33.89 E-value=68 Score=26.55 Aligned_cols=45 Identities=16% Similarity=0.302 Sum_probs=30.1
Q ss_pred HHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecC
Q 021360 96 ANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD 142 (313)
Q Consensus 96 v~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~ 142 (313)
+.++|..|++. +.++++|+++-..+...+ ....+...||.+++-.
T Consensus 1 M~~~L~~L~~~-~~vgvVgGsd~~k~~eQl-~~~~~~~~fdy~f~en 45 (220)
T PF03332_consen 1 MAELLQKLRKK-VPVGVVGGSDLPKIQEQL-GGDDVLDNFDYVFPEN 45 (220)
T ss_dssp HHHHHHHHHTT-SEEEEEESS-HHHHHHHH-STTTHHHH-SEEEEGG
T ss_pred CHHHHHHHHhc-CeEEEEcchhHHHHHHHH-cccchHhhCCeeecCC
Confidence 46788899886 999999999887766555 1223455677777643
No 312
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=33.26 E-value=86 Score=30.85 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=31.8
Q ss_pred chHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCc
Q 021360 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (313)
Q Consensus 94 pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~ 132 (313)
+...+.|+++++.|++++++|+.+...+...+ +.+++.
T Consensus 436 ~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~-~~Lgl~ 473 (694)
T PRK14502 436 STALDALRLLKDKELPLVFCSAKTMGEQDLYR-NELGIK 473 (694)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHH-HHcCCC
Confidence 45678899999999999999999988887666 667764
No 313
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=32.93 E-value=40 Score=22.96 Aligned_cols=18 Identities=28% Similarity=0.601 Sum_probs=14.8
Q ss_pred cEEEEecCCccccChHHH
Q 021360 10 SCVILDLDGTLLNTDGMF 27 (313)
Q Consensus 10 k~vifDlDGTL~d~~~~~ 27 (313)
-.|+++-|||.+|++..+
T Consensus 43 ~~lvL~eDGT~VddEeyF 60 (80)
T cd06536 43 ITLVLAEDGTIVEDEDYF 60 (80)
T ss_pred eEEEEecCCcEEccHHHH
Confidence 468899999999987654
No 314
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=32.21 E-value=74 Score=24.74 Aligned_cols=46 Identities=13% Similarity=0.180 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCC
Q 021360 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR 145 (313)
Q Consensus 95 gv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~ 145 (313)
++.++=+.|++.|.++.+..+.+.+.+...+ +..++ +.|++..++.
T Consensus 54 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~-~~~~~----~~V~~~~~~~ 99 (165)
T PF00875_consen 54 SLADLQESLRKLGIPLLVLRGDPEEVLPELA-KEYGA----TAVYFNEEYT 99 (165)
T ss_dssp HHHHHHHHHHHTTS-EEEEESSHHHHHHHHH-HHHTE----SEEEEE---S
T ss_pred HHHHHHHHHHhcCcceEEEecchHHHHHHHH-HhcCc----CeeEeccccC
Confidence 5667778889999999999999888877666 77777 7777766543
No 315
>PRK07143 hypothetical protein; Provisional
Probab=31.97 E-value=2.7e+02 Score=24.13 Aligned_cols=58 Identities=19% Similarity=0.079 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHCCCCEEEEe--------CCchHHHHHHHHhhcCCccccceEEecCCCC---CCCCChHHHHHHH
Q 021360 95 GANRLIKHLSCHGVPMALAS--------NSHRATIESKISYQHGWNESFSVIVGSDEVR---TGKPSPDIFLEAA 158 (313)
Q Consensus 95 gv~e~l~~l~~~g~~~~i~s--------~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~---~~kp~~~~~~~~~ 158 (313)
...+-++.+++.|+...++- .++++|++..+ . ++. +.+++|+|+. .++++.+.+++.+
T Consensus 66 ~~~er~~~l~~~Gvd~~~~~~F~~~~a~ls~e~Fi~~ll-~-l~~----~~iVvG~Df~FG~~r~G~~~~L~~~~ 134 (279)
T PRK07143 66 DLNSRLQTLANLGFKNIILLDFNEELQNLSGNDFIEKLT-K-NQV----SFFVVGKDFRFGKNASWNADDLKEYF 134 (279)
T ss_pred CHHHHHHHHHHCCCCEEEEeCCCHHHhCCCHHHHHHHHH-h-cCC----CEEEECCCcccCCCCCCCHHHHHHhC
Confidence 34456677888888666543 36778887655 4 666 7899999987 4456777777753
No 316
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=31.29 E-value=3.6e+02 Score=23.61 Aligned_cols=93 Identities=16% Similarity=0.162 Sum_probs=55.4
Q ss_pred chHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHH--HHHHHHHcC-CCCCcEEE
Q 021360 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI--FLEAAKRLN-MEPSSSLV 170 (313)
Q Consensus 94 pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~--~~~~~~~~~-~~~~~~i~ 170 (313)
+.+.+..+.|... ..++++-......+.... +...+ -.|=.+++ ...|.... +..+.+++| ++--++.+
T Consensus 81 Esl~Dt~~vls~y-~D~iviR~~~~~~~~~~a-~~~~v----PVINa~~~--~~HPtQaL~Dl~Ti~e~~g~l~g~kva~ 152 (302)
T PRK14805 81 ESVADFAANLSCW-ADAIVARVFSHSTIEQLA-EHGSV----PVINALCD--LYHPCQALADFLTLAEQFGDVSKVKLAY 152 (302)
T ss_pred cCHHHHHHHHHHh-CCEEEEeCCChhHHHHHH-HhCCC----CEEECCCC--CCChHHHHHHHHHHHHHhCCcCCcEEEE
Confidence 4567777777776 667776665555555443 44433 33333332 23343222 222334555 56667999
Q ss_pred EecCH----hhHHHHHHcCCeEEEeCCC
Q 021360 171 IEDSV----IGVVAGKAAGMEVVAVPSL 194 (313)
Q Consensus 171 vgD~~----~Di~~a~~~G~~~i~v~~~ 194 (313)
+||.. +.+.++..+|+.+..+.+.
T Consensus 153 vGD~~~v~~S~~~~~~~~g~~v~~~~P~ 180 (302)
T PRK14805 153 VGDGNNVTHSLMYGAAILGATMTVICPP 180 (302)
T ss_pred EcCCCccHHHHHHHHHHcCCEEEEECCc
Confidence 99943 4577788999998888873
No 317
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=31.16 E-value=1.6e+02 Score=22.66 Aligned_cols=27 Identities=15% Similarity=0.118 Sum_probs=22.6
Q ss_pred CCchHHHHHHHHHHCCCCEEEEeCCch
Q 021360 92 ALPGANRLIKHLSCHGVPMALASNSHR 118 (313)
Q Consensus 92 ~~pgv~e~l~~l~~~g~~~~i~s~~~~ 118 (313)
..+.+.++++.+++.|+++.+.|+...
T Consensus 73 ~~~~l~~ll~~lk~~Gl~i~l~Tg~~~ 99 (147)
T TIGR02826 73 NREALLSLLKIFKEKGLKTCLYTGLEP 99 (147)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 346788999999999999999998654
No 318
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=30.31 E-value=47 Score=22.55 Aligned_cols=18 Identities=44% Similarity=0.732 Sum_probs=14.9
Q ss_pred cEEEEecCCccccChHHH
Q 021360 10 SCVILDLDGTLLNTDGMF 27 (313)
Q Consensus 10 k~vifDlDGTL~d~~~~~ 27 (313)
-.|+++-|||.++++..+
T Consensus 40 ~~lvL~eDGT~Vd~EeyF 57 (79)
T cd06538 40 SSLVLDEDGTGVDTEEFF 57 (79)
T ss_pred cEEEEecCCcEEccHHHH
Confidence 458899999999987654
No 319
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=30.04 E-value=2.1e+02 Score=25.83 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=50.5
Q ss_pred CCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEE
Q 021360 91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170 (313)
Q Consensus 91 ~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~ 170 (313)
.-.||+.-+|.++.. .|.++++|....-++..++ +.+.-..++..-+..+....-.++ -++. +..++-++.++++
T Consensus 214 ~kRPgvD~FL~~~a~-~yEIVi~sse~gmt~~pl~-d~lDP~g~IsYkLfr~~t~y~~G~--HvKd-ls~LNRdl~kViv 288 (393)
T KOG2832|consen 214 KKRPGVDYFLGHLAK-YYEIVVYSSEQGMTVFPLL-DALDPKGYISYKLFRGATKYEEGH--HVKD-LSKLNRDLQKVIV 288 (393)
T ss_pred ccCchHHHHHHhhcc-cceEEEEecCCccchhhhH-hhcCCcceEEEEEecCcccccCcc--chhh-hhhhccccceeEE
Confidence 356899999999884 4999999988877776566 655554444443333333222221 1222 4567788888888
Q ss_pred EecCH
Q 021360 171 IEDSV 175 (313)
Q Consensus 171 vgD~~ 175 (313)
|+=..
T Consensus 289 Vd~d~ 293 (393)
T KOG2832|consen 289 VDFDA 293 (393)
T ss_pred EEccc
Confidence 76444
No 320
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=29.71 E-value=3.5e+02 Score=23.54 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=21.2
Q ss_pred chHHHHHHHHHHCCCCEEEEeCCchH
Q 021360 94 PGANRLIKHLSCHGVPMALASNSHRA 119 (313)
Q Consensus 94 pgv~e~l~~l~~~g~~~~i~s~~~~~ 119 (313)
||+..+-+.|+..|.+..++|.....
T Consensus 63 ~GA~aLa~aL~~lG~~~~ivtd~~~~ 88 (291)
T PF14336_consen 63 PGAAALARALQALGKEVVIVTDERCA 88 (291)
T ss_pred HHHHHHHHHHHHcCCeEEEEECHHHH
Confidence 68888888899999999999876543
No 321
>COG3536 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.54 E-value=40 Score=24.33 Aligned_cols=38 Identities=26% Similarity=0.313 Sum_probs=24.3
Q ss_pred eeeecCCCcccCccccccCCCccccccCCCCCeEEEEEEEecCC
Q 021360 244 VKGLGRGSKVLGIPTANLSTEGYSDVLSEHPSGVYFGWAGLSTR 287 (313)
Q Consensus 244 ~~g~~~g~~~lg~ptan~~~~~~~~~~p~~~~gvy~~~~~~~~~ 287 (313)
++|.+.|..++----.|+.+- .+-| .|-||+++.++||
T Consensus 43 vqghgp~q~v~v~gkr~V~i~---~i~p---~GnYavri~FdDg 80 (120)
T COG3536 43 VQGHGPGQRVLVPGKRNVQIR---DIEP---VGNYAVRILFDDG 80 (120)
T ss_pred hcccCCCCceeeeccccceEE---EeEe---cCceEEEEEecCC
Confidence 355556544343444566654 3566 7999999999765
No 322
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=29.42 E-value=3.2e+02 Score=22.47 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=24.7
Q ss_pred cCCCCch-HHHHHHHHHHCCCCEEEEeCCch
Q 021360 89 KVKALPG-ANRLIKHLSCHGVPMALASNSHR 118 (313)
Q Consensus 89 ~~~~~pg-v~e~l~~l~~~g~~~~i~s~~~~ 118 (313)
+..+.++ +.++++.+++.|+..++-||+..
T Consensus 48 EPllq~~fl~~l~~~~k~~gi~~~leTnG~~ 78 (213)
T PRK10076 48 EVLMQAEFATRFLQRLRLWGVSCAIETAGDA 78 (213)
T ss_pred hHHcCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 4456666 68999999999999999999843
No 323
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=28.84 E-value=4.2e+02 Score=23.63 Aligned_cols=93 Identities=13% Similarity=0.063 Sum_probs=55.9
Q ss_pred chHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHH--HHHHHHHcC---CCCCcE
Q 021360 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI--FLEAAKRLN---MEPSSS 168 (313)
Q Consensus 94 pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~--~~~~~~~~~---~~~~~~ 168 (313)
+.+.+..+.|... +.++++-......+.... +..++ -.|=... ....|.... +..+.+++| ++.-.+
T Consensus 88 Esl~Dtarvls~y-~D~Iv~R~~~~~~~~~~a-~~~~v----PVINa~~--~~~HPtQaLaDl~Ti~e~~g~~~l~g~~i 159 (336)
T PRK03515 88 ESIKDTARVLGRM-YDGIQYRGYGQEIVETLA-EYAGV----PVWNGLT--NEFHPTQLLADLLTMQEHLPGKAFNEMTL 159 (336)
T ss_pred CCHHHHHHHHHHh-CcEEEEEeCChHHHHHHH-HhCCC----CEEECCC--CCCChHHHHHHHHHHHHHhCCCCcCCCEE
Confidence 5677777777777 667777666666555444 54443 2332222 223333221 223334553 666789
Q ss_pred EEEecCH-----hhHHHHHHcCCeEEEeCCC
Q 021360 169 LVIEDSV-----IGVVAGKAAGMEVVAVPSL 194 (313)
Q Consensus 169 i~vgD~~-----~Di~~a~~~G~~~i~v~~~ 194 (313)
.++||.. +-+.++...|+.+..+.+.
T Consensus 160 a~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~ 190 (336)
T PRK03515 160 AYAGDARNNMGNSLLEAAALTGLDLRLVAPK 190 (336)
T ss_pred EEeCCCcCcHHHHHHHHHHHcCCEEEEECCc
Confidence 9999952 3577788899999888873
No 324
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=28.82 E-value=1.2e+02 Score=20.09 Aligned_cols=30 Identities=23% Similarity=0.483 Sum_probs=24.0
Q ss_pred cEEEEecCCccccChHHHHHHHHHHHHHcC
Q 021360 10 SCVILDLDGTLLNTDGMFSEVLKTFLVKYG 39 (313)
Q Consensus 10 k~vifDlDGTL~d~~~~~~~~~~~~~~~~g 39 (313)
+.|.+|++|+-.=+......++..+..+++
T Consensus 18 ~~V~lDF~gv~~~~ssFl~eafg~l~~~~~ 47 (74)
T PF14213_consen 18 EKVVLDFEGVESITSSFLNEAFGQLVREFG 47 (74)
T ss_pred CeEEEECCCcccccHHHHHHHHHHHHHHcC
Confidence 459999999966667777788888887776
No 325
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=28.65 E-value=2.2e+02 Score=25.55 Aligned_cols=74 Identities=20% Similarity=0.267 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHCCC--CEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEe
Q 021360 95 GANRLIKHLSCHGV--PMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIE 172 (313)
Q Consensus 95 gv~e~l~~l~~~g~--~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~vg 172 (313)
++..+-++|+++|. .++++|+++..-++.-. + + .+.+.+++++ ++|+.|++|.
T Consensus 52 ~avkiydeL~~~GedveVA~VsG~~~~~v~ad~-~---I-------------------~~qld~vl~~--~~~~~~i~Vs 106 (344)
T PF04123_consen 52 GAVKIYDELKAEGEDVEVAVVSGSPDVGVEADR-K---I-------------------AEQLDEVLSK--FDPDSAIVVS 106 (344)
T ss_pred HHHHHHHHHHhcCCCeEEEEEECCCCCchhhHH-H---H-------------------HHHHHHHHHh--CCCCEEEEEe
Confidence 34456677777774 45566666554332211 0 0 0334455555 5788999999
Q ss_pred cCHhhHHH--HHHcCCeEEEeCC
Q 021360 173 DSVIGVVA--GKAAGMEVVAVPS 193 (313)
Q Consensus 173 D~~~Di~~--a~~~G~~~i~v~~ 193 (313)
|+..|-.. .-+.-.++..+.+
T Consensus 107 DGaeDE~vlPiIqSr~~V~sV~R 129 (344)
T PF04123_consen 107 DGAEDERVLPIIQSRVPVDSVKR 129 (344)
T ss_pred cChhhhhhhHhhhccCceEEEEE
Confidence 99998665 3344445555544
No 326
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=27.72 E-value=71 Score=29.04 Aligned_cols=18 Identities=28% Similarity=0.200 Sum_probs=15.2
Q ss_pred ccCccEEEEecCCccccC
Q 021360 6 KKLMSCVILDLDGTLLNT 23 (313)
Q Consensus 6 ~~~~k~vifDlDGTL~d~ 23 (313)
+.++.++-||||+||..-
T Consensus 24 l~~i~~~GfdmDyTL~~Y 41 (424)
T KOG2469|consen 24 LENIGIVGFDMDYTLARY 41 (424)
T ss_pred hhcCcEEeeccccchhhh
Confidence 357899999999999854
No 327
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=27.70 E-value=2.2e+02 Score=20.84 Aligned_cols=10 Identities=30% Similarity=0.557 Sum_probs=5.9
Q ss_pred cCCeEEEeCC
Q 021360 184 AGMEVVAVPS 193 (313)
Q Consensus 184 ~G~~~i~v~~ 193 (313)
.|+.++.++.
T Consensus 103 ~~~~v~~v~~ 112 (125)
T TIGR01518 103 CPLKVVYLPR 112 (125)
T ss_pred cCcEEEEeCC
Confidence 3666666654
No 328
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=27.52 E-value=4.5e+02 Score=23.49 Aligned_cols=93 Identities=13% Similarity=0.177 Sum_probs=53.7
Q ss_pred chHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHH--HHHHHHHcC----CCCCc
Q 021360 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI--FLEAAKRLN----MEPSS 167 (313)
Q Consensus 94 pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~--~~~~~~~~~----~~~~~ 167 (313)
+.+.+..+-|... ..++++-......++... +..++ - |+-+.+ ....|.... +..+.+++| ++.-.
T Consensus 85 Esl~Dtarvls~y-~D~iviR~~~~~~~~~~a-~~~~v----P-VINa~~-~~~HPtQaLaDl~Ti~e~~g~g~~l~glk 156 (338)
T PRK02255 85 ESLEDTARVLSRL-VDIIMARVDRHQTVVELA-KYATV----P-VINGMS-DYNHPTQELGDLFTMIEHLPEGKKLEDCK 156 (338)
T ss_pred cCHHHHHHHHHHh-CcEEEEecCChHHHHHHH-HhCCC----C-EEECCC-CCCChHHHHHHHHHHHHHhCCCCCCCCCE
Confidence 4566777777766 556655544444454433 54443 3 333322 223443222 223345653 66678
Q ss_pred EEEEecCH----hhHHHHHHcCCeEEEeCCC
Q 021360 168 SLVIEDSV----IGVVAGKAAGMEVVAVPSL 194 (313)
Q Consensus 168 ~i~vgD~~----~Di~~a~~~G~~~i~v~~~ 194 (313)
+.++||.. +-+..+..+|+.+..+.+.
T Consensus 157 v~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~ 187 (338)
T PRK02255 157 VVFVGDATQVCVSLMFIATKMGMDFVHFGPK 187 (338)
T ss_pred EEEECCCchHHHHHHHHHHhCCCEEEEECCC
Confidence 99999943 3567788899999888873
No 329
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=27.36 E-value=4.5e+02 Score=23.42 Aligned_cols=93 Identities=14% Similarity=0.067 Sum_probs=56.5
Q ss_pred chHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHH--HHHHHHH-cC-CCCCcEE
Q 021360 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI--FLEAAKR-LN-MEPSSSL 169 (313)
Q Consensus 94 pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~--~~~~~~~-~~-~~~~~~i 169 (313)
+.+.+..+.|... ..++++-......+.... +...+ -.| -+.+ ....|.... +..+.++ .| ++.-++.
T Consensus 88 Esl~DTarvls~y-~D~iviR~~~~~~~~~~a-~~s~v----PVI-Na~~-~~~HPtQaL~Dl~Ti~e~~~g~l~g~kia 159 (332)
T PRK04284 88 ESTKDTARVLGGM-YDGIEYRGFSQRTVETLA-EYSGV----PVW-NGLT-DEDHPTQVLADFLTAKEHLKKPYKDIKFT 159 (332)
T ss_pred cCHHHHHHHHHHh-CCEEEEecCchHHHHHHH-HhCCC----CEE-ECCC-CCCChHHHHHHHHHHHHHhcCCcCCcEEE
Confidence 4577777777777 677777766666555444 54443 233 3222 233343222 2233345 34 6667899
Q ss_pred EEecCH-----hhHHHHHHcCCeEEEeCCC
Q 021360 170 VIEDSV-----IGVVAGKAAGMEVVAVPSL 194 (313)
Q Consensus 170 ~vgD~~-----~Di~~a~~~G~~~i~v~~~ 194 (313)
++||.. +.+.++..+|+.+..+.+.
T Consensus 160 ~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~ 189 (332)
T PRK04284 160 YVGDGRNNVANALMQGAAIMGMDFHLVCPK 189 (332)
T ss_pred EecCCCcchHHHHHHHHHHcCCEEEEECCc
Confidence 999962 4567788999998888873
No 330
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=27.24 E-value=4.6e+02 Score=23.54 Aligned_cols=86 Identities=19% Similarity=0.228 Sum_probs=52.2
Q ss_pred hHHHHHHHHH---HCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEE
Q 021360 95 GANRLIKHLS---CHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVI 171 (313)
Q Consensus 95 gv~e~l~~l~---~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~v 171 (313)
|+...+..|. ++...++.+|.++...--.+-.+++|+ ..++.- ++..|..-....+.+|- +|+..
T Consensus 59 GA~n~i~~Ls~e~~~~~gViaaSaGNHaQGvA~aa~~lGi----~a~IvM-----P~~tp~~Kv~a~r~~Ga---eVil~ 126 (347)
T COG1171 59 GAYNKLSSLSEEEERAAGVIAASAGNHAQGVAYAAKRLGI----KATIVM-----PETTPKIKVDATRGYGA---EVILH 126 (347)
T ss_pred hHHHHHHhcChhhhhcCceEEecCCcHHHHHHHHHHHhCC----CEEEEe-----cCCCcHHHHHHHHhcCC---EEEEE
Confidence 4445555554 122345666666655544555688999 555442 33444566666677776 89999
Q ss_pred ecCHhhHHH-----HHHcCCeEEEeCCC
Q 021360 172 EDSVIGVVA-----GKAAGMEVVAVPSL 194 (313)
Q Consensus 172 gD~~~Di~~-----a~~~G~~~i~v~~~ 194 (313)
||+..|-.. +++-|+ .++.+.
T Consensus 127 g~~~dda~~~a~~~a~~~G~--~~i~pf 152 (347)
T COG1171 127 GDNFDDAYAAAEELAEEEGL--TFVPPF 152 (347)
T ss_pred CCCHHHHHHHHHHHHHHcCC--EEeCCC
Confidence 999977555 455677 456553
No 331
>PF09551 Spore_II_R: Stage II sporulation protein R (spore_II_R); InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=27.09 E-value=86 Score=23.62 Aligned_cols=35 Identities=26% Similarity=0.205 Sum_probs=23.2
Q ss_pred cCccccccCCCccccccCCCCCeEE-EEEEEecCC--ceeEEEEE
Q 021360 254 LGIPTANLSTEGYSDVLSEHPSGVY-FGWAGLSTR--GVYKMVMS 295 (313)
Q Consensus 254 lg~ptan~~~~~~~~~~p~~~~gvy-~~~~~~~~~--~~~~~~~~ 295 (313)
.-|||= .-.. .++| -|.| |.++.+.+| .-|.+|+.
T Consensus 81 ~~FPtK---~YG~-~~~P---aG~YeAlrI~IG~g~G~NWWCVLf 118 (130)
T PF09551_consen 81 FYFPTK---TYGD-IVLP---AGEYEALRITIGEGKGHNWWCVLF 118 (130)
T ss_pred eeCCCc---eECC-Eecc---CCceEEEEEEecCccCcceEEEec
Confidence 369983 3333 7888 5999 888888543 34666663
No 332
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=27.03 E-value=4.2e+02 Score=23.04 Aligned_cols=44 Identities=20% Similarity=0.223 Sum_probs=28.0
Q ss_pred CChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCCCCC
Q 021360 149 PSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPK 196 (313)
Q Consensus 149 p~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~~~~ 196 (313)
.+...|.+++++.|.+ .+.| |+..|+....-.|..++.+..+..
T Consensus 225 SNs~rL~eiA~~~g~~---aylI-d~~~ei~~~w~~~~~~VGvTAGAS 268 (294)
T COG0761 225 SNSNRLAEIAKRHGKP---AYLI-DDAEEIDPEWLKGVKTVGVTAGAS 268 (294)
T ss_pred ccHHHHHHHHHHhCCC---eEEe-CChHhCCHHHhcCccEEEEecCCC
Confidence 3446677777777762 3333 556777777777777777777543
No 333
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=26.87 E-value=1.1e+02 Score=27.00 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=27.0
Q ss_pred ccCCCCchHHHHHHHHHHCCCCEEEEeCCch
Q 021360 88 CKVKALPGANRLIKHLSCHGVPMALASNSHR 118 (313)
Q Consensus 88 ~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~ 118 (313)
.+..++|.+.++++.+++.|+.+.+.||+..
T Consensus 139 GEPlL~p~l~eli~~~k~~Gi~~~L~TNG~~ 169 (322)
T PRK13762 139 GEPTLYPYLPELIEEFHKRGFTTFLVTNGTR 169 (322)
T ss_pred ccccchhhHHHHHHHHHHcCCCEEEECCCCC
Confidence 3556788999999999999999999999964
No 334
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=26.77 E-value=1.1e+02 Score=28.21 Aligned_cols=47 Identities=17% Similarity=0.148 Sum_probs=35.5
Q ss_pred chHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCC
Q 021360 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR 145 (313)
Q Consensus 94 pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~ 145 (313)
.++.++=+.|++.|.++.+..+.+.+.+..++ +.+++ ..|++-.++.
T Consensus 61 esL~~L~~~L~~~g~~L~v~~G~~~~vl~~L~-~~~~~----~~V~~~~~~~ 107 (429)
T TIGR02765 61 ESLKDLRTSLRKLGSDLLVRSGKPEDVLPELI-KELGV----RTVFLHQEVG 107 (429)
T ss_pred HHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHH-HHhCC----CEEEEeccCC
Confidence 35667777888889999999888888777666 66777 7777766554
No 335
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=26.55 E-value=1.8e+02 Score=22.80 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=32.1
Q ss_pred CchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCcc
Q 021360 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE 133 (313)
Q Consensus 93 ~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~ 133 (313)
.||..+-.++|+.+|+..+++-.-+..|+...+.+.++...
T Consensus 64 vPGyi~~a~elksKGVd~iicvSVnDpFv~~aW~k~~g~~~ 104 (171)
T KOG0541|consen 64 VPGYIEKADELKSKGVDEIICVSVNDPFVMKAWAKSLGAND 104 (171)
T ss_pred CchHHHHHHHHHhcCCcEEEEEecCcHHHHHHHHhhcCccc
Confidence 58999999999999998888777777777666657676653
No 336
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=26.02 E-value=1.3e+02 Score=26.61 Aligned_cols=27 Identities=22% Similarity=0.153 Sum_probs=22.4
Q ss_pred CchHHHHHHHHHHCCCCEEEEeCCchH
Q 021360 93 LPGANRLIKHLSCHGVPMALASNSHRA 119 (313)
Q Consensus 93 ~pgv~e~l~~l~~~g~~~~i~s~~~~~ 119 (313)
.|-+.-+.+.|+++|++++++|.+...
T Consensus 51 TP~v~~L~~~L~~~G~~~~IlSRGYg~ 77 (326)
T PF02606_consen 51 TPLVIWLARLLQARGYRPAILSRGYGR 77 (326)
T ss_pred hHHHHHHHHHHHhcCCceEEEcCCCCC
Confidence 467888999999999999999976543
No 337
>COG4951 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.02 E-value=47 Score=28.23 Aligned_cols=58 Identities=10% Similarity=0.148 Sum_probs=42.6
Q ss_pred ceEEecCCCCCCCCChHHHHHHHHHcCCCC----------CcEEEEecCHhhHHHHHHcCCeEEEeCC
Q 021360 136 SVIVGSDEVRTGKPSPDIFLEAAKRLNMEP----------SSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 136 ~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~----------~~~i~vgD~~~Di~~a~~~G~~~i~v~~ 193 (313)
..+.+-.|.+..|-+...|.++|..+|++. ..+|+|=|+.---..|+.+|...+-..+
T Consensus 127 yfLa~DfDeG~WK~da~af~r~c~e~gi~A~lEISRS~~GahvWiFF~~~IsareARrlG~a~i~~AM 194 (361)
T COG4951 127 YFLAVDFDEGEWKKDASAFMRSCDELGVPAALEISRSRQGAHVWIFFASRISAREARRLGTAIISYAM 194 (361)
T ss_pred EEEEEecCccchHHHHHHHHHHHHhhCChhhheecccCCCceEEEEecCcccHHHHHHHHHHHHHHHH
Confidence 345555666778888899999999988764 2588888888777778888875444333
No 338
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=25.77 E-value=4.4e+02 Score=22.85 Aligned_cols=92 Identities=13% Similarity=0.158 Sum_probs=49.9
Q ss_pred HHHHHHHHHHCCCCEEEEeCCchHHHHHHHH--hhcCCccccceEEecCCCCCCCCCh----HHHHHHHHHcCCCCCcEE
Q 021360 96 ANRLIKHLSCHGVPMALASNSHRATIESKIS--YQHGWNESFSVIVGSDEVRTGKPSP----DIFLEAAKRLNMEPSSSL 169 (313)
Q Consensus 96 v~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~--~~~~~~~~f~~v~~~~~~~~~kp~~----~~~~~~~~~~~~~~~~~i 169 (313)
+.++|+..++.||-+..+.-.+.+.++..+. +..+. ..|+........-... .....++++.+++ =++
T Consensus 4 ~k~ll~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~s----PvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VP--Val 77 (282)
T TIGR01858 4 TKYMLQDAQAGGYAVPAFNIHNLETIQAVVETAAEMRS----PVILAGTPGTFKHAGTEYIVALCSAASTTYNMP--LAL 77 (282)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhCC----CEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCC--EEE
Confidence 4577777788888777777667777766662 22232 2333222111110111 2333344454443 334
Q ss_pred EE--ecCHhhHHHHHHcCCeEEEeCC
Q 021360 170 VI--EDSVIGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 170 ~v--gD~~~Di~~a~~~G~~~i~v~~ 193 (313)
+. |.+..++..|-.+|+.+++++.
T Consensus 78 HLDHg~~~e~i~~ai~~GFtSVM~Dg 103 (282)
T TIGR01858 78 HLDHHESLDDIRQKVHAGVRSAMIDG 103 (282)
T ss_pred ECCCCCCHHHHHHHHHcCCCEEeecC
Confidence 44 3344677778888888888876
No 339
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=25.57 E-value=1.6e+02 Score=24.37 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=25.9
Q ss_pred HHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCc
Q 021360 98 RLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (313)
Q Consensus 98 e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~ 132 (313)
+.++ ++++|+.++++|+.+...+...+ ..+++.
T Consensus 22 ~~~~-~~~~gi~~viaTGR~~~~v~~~~-~~l~l~ 54 (236)
T TIGR02471 22 ELLR-GSGDAVGFGIATGRSVESAKSRY-AKLNLP 54 (236)
T ss_pred HHHH-hcCCCceEEEEeCCCHHHHHHHH-HhCCCC
Confidence 4455 47789999999999999888887 666664
No 340
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=25.19 E-value=4.9e+02 Score=23.17 Aligned_cols=93 Identities=14% Similarity=0.124 Sum_probs=57.1
Q ss_pred CchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHH--HHHHHHHcC-CCCCcEE
Q 021360 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI--FLEAAKRLN-MEPSSSL 169 (313)
Q Consensus 93 ~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~--~~~~~~~~~-~~~~~~i 169 (313)
-+.+.+..+.|... +.++++-......++... +...+ -.|=.+++ ...|.... +..+.+++| ++.-.+.
T Consensus 88 gEsl~Dt~rvls~y-~D~iviR~~~~~~~~~~a-~~~~v----PVINa~~~--~~HPtQaLaDl~Ti~e~~g~l~g~~va 159 (331)
T PRK02102 88 KESIEDTARVLGRM-YDGIEYRGFKQEIVEELA-KYSGV----PVWNGLTD--EWHPTQMLADFMTMKEHFGPLKGLKLA 159 (331)
T ss_pred CcCHHHHHHHHhhc-CCEEEEECCchHHHHHHH-HhCCC----CEEECCCC--CCChHHHHHHHHHHHHHhCCCCCCEEE
Confidence 35677778878777 677777766666665444 54443 33333332 33443222 222334555 6777899
Q ss_pred EEecCH-----hhHHHHHHcCCeEEEeCC
Q 021360 170 VIEDSV-----IGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 170 ~vgD~~-----~Di~~a~~~G~~~i~v~~ 193 (313)
++||.. +-+..+..+|+.+..+.+
T Consensus 160 ~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P 188 (331)
T PRK02102 160 YVGDGRNNMANSLMVGGAKLGMDVRICAP 188 (331)
T ss_pred EECCCcccHHHHHHHHHHHcCCEEEEECC
Confidence 999962 346668889999888877
No 341
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=25.05 E-value=1.4e+02 Score=22.51 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=22.1
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEecC
Q 021360 146 TGKPSPDIFLEAAKRLNMEPSSSLVIEDS 174 (313)
Q Consensus 146 ~~kp~~~~~~~~~~~~~~~~~~~i~vgD~ 174 (313)
...|+++.|++.+..+|++++..+++-|.
T Consensus 75 ~~~p~~~~~~~~~~~~GI~~~~~vVvY~~ 103 (138)
T cd01445 75 SMEPSEAEFAAMFEAKGIDLDKHLIATDG 103 (138)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCeEEEECC
Confidence 44666788999999999998776665553
No 342
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=24.80 E-value=1.2e+02 Score=25.31 Aligned_cols=36 Identities=28% Similarity=0.295 Sum_probs=27.7
Q ss_pred HHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCc
Q 021360 96 ANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 132 (313)
Q Consensus 96 v~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~ 132 (313)
+.+.+.+|++.|++++++|.....-+.... +.+++.
T Consensus 28 A~pv~~el~d~G~~Vi~~SSKT~aE~~~l~-~~l~v~ 63 (274)
T COG3769 28 AAPVLLELKDAGVPVILCSSKTRAEMLYLQ-KSLGVQ 63 (274)
T ss_pred cchHHHHHHHcCCeEEEeccchHHHHHHHH-HhcCCC
Confidence 446788899999999999988776665444 777775
No 343
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=24.74 E-value=1.4e+02 Score=27.93 Aligned_cols=47 Identities=13% Similarity=0.053 Sum_probs=35.5
Q ss_pred chHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCC
Q 021360 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR 145 (313)
Q Consensus 94 pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~ 145 (313)
.++.++=+.|++.|.++.+..+.+.+.+..++ +..++ +.|+...++.
T Consensus 55 esL~~L~~~L~~~G~~L~v~~G~p~~vl~~l~-~~~~~----~~V~~~~~~~ 101 (471)
T TIGR03556 55 GCLQELQQRYQQAGSQLLILQGDPVQLIPQLA-QQLGA----KAVYWNLDVE 101 (471)
T ss_pred HHHHHHHHHHHHCCCCeEEEECCHHHHHHHHH-HHcCC----CEEEEecccC
Confidence 46667777888899999999888888777666 66777 7777766554
No 344
>TIGR02837 spore_II_R stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage II sporulation protein R.
Probab=24.73 E-value=1.1e+02 Score=24.16 Aligned_cols=35 Identities=23% Similarity=0.185 Sum_probs=23.6
Q ss_pred cCccccccCCCccccccCCCCCeEE-EEEEEecCC--ceeEEEEE
Q 021360 254 LGIPTANLSTEGYSDVLSEHPSGVY-FGWAGLSTR--GVYKMVMS 295 (313)
Q Consensus 254 lg~ptan~~~~~~~~~~p~~~~gvy-~~~~~~~~~--~~~~~~~~ 295 (313)
.-||| +.-.. .++| -|.| |.++.+.+| ..|.+|+.
T Consensus 116 ~~FPt---K~YG~-~~~P---aG~YeAlrI~IG~g~G~NWWCVlf 153 (168)
T TIGR02837 116 YSFPT---KLYGN-IVLP---AGEYEALRILIGEGAGANWWCVVF 153 (168)
T ss_pred EeCCC---cccCC-Eecc---CCceEEEEEEecCcCCcceEEEec
Confidence 47999 33343 7888 5999 888888543 34666653
No 345
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=24.71 E-value=2.8e+02 Score=25.41 Aligned_cols=83 Identities=11% Similarity=0.064 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecC---CC-CCCCCChHHHHHHHHHcCCCCCcEEE
Q 021360 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD---EV-RTGKPSPDIFLEAAKRLNMEPSSSLV 170 (313)
Q Consensus 95 gv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~---~~-~~~kp~~~~~~~~~~~~~~~~~~~i~ 170 (313)
.+.+-.+.++++|.++-+.-+.+....-.+-...+.+...-+....+- ++ +...+-|+.-+-..+-+|++++++++
T Consensus 12 ~l~~~y~~~ka~~L~LdmtRGKPs~eQLdLS~~lL~~~~~~~~~~dG~D~RNY~G~l~Gipe~r~l~a~llgv~~~~viv 91 (425)
T PF12897_consen 12 ELRKQYEELKAKGLKLDMTRGKPSPEQLDLSNPLLDLPGSSDYLADGTDCRNYPGGLDGIPEARELFAELLGVPPENVIV 91 (425)
T ss_dssp HHHHHHHHHHHTT--EES---S--HHHHHGGGGGGGSSTTCCBECTTEBTTSS-S-SS--HHHHHHHHHHHTS-GGGEEE
T ss_pred HHHHHHHHHHHcCCCcccCCCCCCHHHHhhhHHHhcCCCCccccCCCccccCCCCccCChHHHHHHHHHHhCCCHHHEEE
Confidence 344556778899988877766665433222112333321111221333 34 44456677777777889999999999
Q ss_pred EecCHhh
Q 021360 171 IEDSVIG 177 (313)
Q Consensus 171 vgD~~~D 177 (313)
.|+|.-.
T Consensus 92 ~gNSSL~ 98 (425)
T PF12897_consen 92 GGNSSLN 98 (425)
T ss_dssp -SS-HHH
T ss_pred eccchHH
Confidence 9999843
No 346
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=24.63 E-value=4.8e+02 Score=22.86 Aligned_cols=93 Identities=14% Similarity=0.089 Sum_probs=56.6
Q ss_pred chHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHH--HHHHHHHcC-CCCCcEEE
Q 021360 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI--FLEAAKRLN-MEPSSSLV 170 (313)
Q Consensus 94 pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~--~~~~~~~~~-~~~~~~i~ 170 (313)
+.+.+.++.|... +.++++-......++... +..++ -.|=.+ + ....|.... +-.+.+++| ++.-++.+
T Consensus 86 Esl~Dt~~~l~~~-~D~iv~R~~~~~~~~~~a-~~~~v----PVINag-~-~~~HPtQaL~Dl~Ti~e~~g~l~gl~i~~ 157 (304)
T PRK00779 86 EPIEDTARVLSRY-VDAIMIRTFEHETLEELA-EYSTV----PVINGL-T-DLSHPCQILADLLTIYEHRGSLKGLKVAW 157 (304)
T ss_pred cCHHHHHHHHHHh-CCEEEEcCCChhHHHHHH-HhCCC----CEEeCC-C-CCCChHHHHHHHHHHHHHhCCcCCcEEEE
Confidence 4577777777777 667776666655555444 54443 333333 2 234443222 222334555 66678999
Q ss_pred EecCH----hhHHHHHHcCCeEEEeCCC
Q 021360 171 IEDSV----IGVVAGKAAGMEVVAVPSL 194 (313)
Q Consensus 171 vgD~~----~Di~~a~~~G~~~i~v~~~ 194 (313)
+||.. +.+..+..+|+.+..+.+.
T Consensus 158 vGd~~~v~~Sl~~~l~~~g~~v~~~~P~ 185 (304)
T PRK00779 158 VGDGNNVANSLLLAAALLGFDLRVATPK 185 (304)
T ss_pred EeCCCccHHHHHHHHHHcCCEEEEECCc
Confidence 99933 3567788999999888873
No 347
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=24.56 E-value=2e+02 Score=26.29 Aligned_cols=84 Identities=11% Similarity=0.080 Sum_probs=55.2
Q ss_pred CCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcEE
Q 021360 90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169 (313)
Q Consensus 90 ~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i 169 (313)
+.-.|++..++..+.+. ++++++|.+.......++ +.++-...|......+.+-. +.+.. .+-+...+.+...++
T Consensus 251 v~kRp~l~~fl~~ls~~-~~l~~ft~s~~~y~~~v~-d~l~~~k~~~~~lfr~sc~~--~~G~~-ikDis~i~r~l~~vi 325 (390)
T COG5190 251 VSKRPELDYFLGKLSKI-HELVYFTASVKRYADPVL-DILDSDKVFSHRLFRESCVS--YLGVY-IKDISKIGRSLDKVI 325 (390)
T ss_pred EcCChHHHHHHhhhhhh-EEEEEEecchhhhcchHH-Hhccccceeehhhhccccee--ccCch-hhhHHhhccCCCceE
Confidence 35578999999999887 899999999887777655 55554332332222222222 23333 334456678899999
Q ss_pred EEecCHhhH
Q 021360 170 VIEDSVIGV 178 (313)
Q Consensus 170 ~vgD~~~Di 178 (313)
.+.+++.-.
T Consensus 326 iId~~p~SY 334 (390)
T COG5190 326 IIDNSPASY 334 (390)
T ss_pred EeeCChhhh
Confidence 999998644
No 348
>TIGR01624 LRP1_Cterm LRP1 C-terminal domain. This model represents a tightly conserved small domain found in LRP1 and related plant proteins. This family also contains a well-conserved putative zinc finger domain (TIGR01623). The rest of the sequence of most members consists of highly divergent, low-complexity sequence.
Probab=24.43 E-value=1.2e+02 Score=18.31 Aligned_cols=9 Identities=33% Similarity=0.678 Sum_probs=5.6
Q ss_pred eEEEEEecC
Q 021360 290 YKMVMSIGW 298 (313)
Q Consensus 290 ~~~~~~~g~ 298 (313)
|++..|||-
T Consensus 30 YQt~V~IgG 38 (50)
T TIGR01624 30 YQATVTIGG 38 (50)
T ss_pred EEEEEEECc
Confidence 666666664
No 349
>PF08381 BRX: Transcription factor regulating root and shoot growth via Pin3; InterPro: IPR013591 This is a short domain, approximately 35 residues in length that is found near the C terminus in a number of plant proteins, being repeated in some members. It is found in Brevis radix-like proteins. These may act as a regulator of cell proliferation and elongation in the root []. It is also found in proteins annotated as involved in disease resistance and in the regulation of chromosome condensation, which also contain other domains with varied functions, such as TIR (IPR000157 from INTERPRO) and FYVE (IPR000306 from INTERPRO) respectively.
Probab=23.89 E-value=81 Score=20.07 Aligned_cols=14 Identities=36% Similarity=0.665 Sum_probs=11.0
Q ss_pred CeEEEEEEEecCCc
Q 021360 275 SGVYFGWAGLSTRG 288 (313)
Q Consensus 275 ~gvy~~~~~~~~~~ 288 (313)
+|||.|-+...+|.
T Consensus 12 pGVyiTl~~~p~G~ 25 (59)
T PF08381_consen 12 PGVYITLVSLPDGG 25 (59)
T ss_pred CeeEEEEEECCCCC
Confidence 69999988876653
No 350
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=23.81 E-value=2.9e+02 Score=20.92 Aligned_cols=58 Identities=12% Similarity=0.141 Sum_probs=25.3
Q ss_pred ceEEecCCCCC-CCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHH-------HHHcCC-eEEEeCC
Q 021360 136 SVIVGSDEVRT-GKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVA-------GKAAGM-EVVAVPS 193 (313)
Q Consensus 136 ~~v~~~~~~~~-~kp~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~-------a~~~G~-~~i~v~~ 193 (313)
..++++..... ..+..+.++..+...|++.+.++.-..+.+=++- .++.|+ ++++|..
T Consensus 40 ~il~SGg~~~~~~~~ea~~~~~~l~~~gvp~~~I~~e~~s~~T~ena~~~~~~~~~~~~~~iilVT~ 106 (155)
T PF02698_consen 40 RILFSGGYGHGDGRSEAEAMRDYLIELGVPEERIILEPKSTNTYENARFSKRLLKERGWQSIILVTS 106 (155)
T ss_dssp -EEEE--SSTTHTS-HHHHHHHHHHHT---GGGEEEE----SHHHHHHHHHHHHHT-SSS-EEEE--
T ss_pred eEEECCCCCCCCCCCHHHHHHHHHHhcccchheeEccCCCCCHHHHHHHHHHHHHhhcCCeEEEECC
Confidence 34555544333 5667788888888888887776664443332322 344455 3455544
No 351
>PF04358 DsrC: DsrC like protein; InterPro: IPR007453 DsrC (P45573 from SWISSPROT) has been observed to co-purify with Desulphovibrio vulgaris dissimilatory sulphite reductase []. However, DsrC appears to be only loosely associated to the sulphite reductase, which suggests that it may not be an integral part of the dissimilatory sulphite reductase. Many proteins in this entry are found in organisms such as Escherichia coli and Haemophilus influenzae which do not contain dissimilatory sulphite reductases but can synthesise assimilatory sirohaem sulphite and nitrite reductases. It is speculated that DsrC may be involved in the assembly, folding or stabilisation of sirohaem proteins []. The strictly conserved cysteine in the C terminus suggests that DsrC may have a catalytic function in the metabolism of sulphur compounds []. Also included in this entry is TusE, a partner to TusBCD in a sulphur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Many proteins in this entry are annotated as the third (gamma) subunit of dissimilatory sulphite reductase ; PDB: 2V4J_F 2A5W_C 1SAU_A 1JI8_A 1YX3_A.
Probab=23.81 E-value=2.9e+02 Score=20.06 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=24.5
Q ss_pred cEEEEecCCccccChHHHHHHHHHHHHHcCCCCChhhh
Q 021360 10 SCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREK 47 (313)
Q Consensus 10 k~vifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~ 47 (313)
+.|-+|=||=|+|.+.=-......+.++.|+.++.+.+
T Consensus 7 ~~i~~D~eGfL~~~~dW~eevA~~lA~~egI~Ltd~HW 44 (109)
T PF04358_consen 7 KTIETDEEGFLVDPEDWNEEVAEALAKEEGIELTDEHW 44 (109)
T ss_dssp EEEEEETTSEESSGGG--HHHHHHHHHCTT-S--HHHH
T ss_pred EEeeeCCCcCcCChHhCCHHHHHHHHHHcCCCCCHHHH
Confidence 56889999999987654445556666677888777655
No 352
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=23.75 E-value=2.6e+02 Score=24.07 Aligned_cols=44 Identities=11% Similarity=0.014 Sum_probs=30.6
Q ss_pred ChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCC
Q 021360 150 SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~ 193 (313)
+....+.++.+.|++.-....+.+...-...+...|.++++-+.
T Consensus 98 dK~~~k~~l~~~gIp~p~~~~~~~~~~~~~~~~~~~~P~ivKP~ 141 (304)
T PRK01372 98 DKLRTKLVWQAAGLPTPPWIVLTREEDLLAAIDKLGLPLVVKPA 141 (304)
T ss_pred CHHHHHHHHHHCCCCCCCEEEEeCcchHHHHHhhcCCCEEEeeC
Confidence 44667788889999877766665554435556778888766555
No 353
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=23.58 E-value=2.9e+02 Score=25.17 Aligned_cols=10 Identities=0% Similarity=-0.625 Sum_probs=7.4
Q ss_pred CeEEEEEEEe
Q 021360 275 SGVYFGWAGL 284 (313)
Q Consensus 275 ~gvy~~~~~~ 284 (313)
.|+|.++|.-
T Consensus 255 ag~lvt~V~~ 264 (394)
T cd06831 255 AFTLAVNVIA 264 (394)
T ss_pred ceEEEEEEEE
Confidence 5888888764
No 354
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=23.51 E-value=4.5e+02 Score=23.29 Aligned_cols=95 Identities=14% Similarity=0.078 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHCCCCEEEEeCCchHHHHHHHH--hhcCCccccceEEecCCCC-CCCC------ChHHHHHHHHHcCCCC
Q 021360 95 GANRLIKHLSCHGVPMALASNSHRATIESKIS--YQHGWNESFSVIVGSDEVR-TGKP------SPDIFLEAAKRLNMEP 165 (313)
Q Consensus 95 gv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~--~~~~~~~~f~~v~~~~~~~-~~kp------~~~~~~~~~~~~~~~~ 165 (313)
.+.++|+..++.+|-+..+.-.+.++++.++. +..+- ..++-..... ...+ -...+...+++.+++.
T Consensus 11 ~~k~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~s----PvIlq~s~~~~~~~g~~~~~~~~~~~~~~a~~a~~~V 86 (321)
T PRK07084 11 NTREMFAKAVKGGYAIPAYNFNNMEQLQAIIQACVETKS----PVILQVSKGARKYANATLLRYMAQGAVEYAKELGCPI 86 (321)
T ss_pred CHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCC----CEEEEechhHHhhCCchHHHHHHHHHHHHHHHcCCCC
Confidence 46778888888888777777777777776662 22222 2332221111 0011 0111223333433333
Q ss_pred CcEEEEe--cCHhhHHHHHHcCCeEEEeCC
Q 021360 166 SSSLVIE--DSVIGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 166 ~~~i~vg--D~~~Di~~a~~~G~~~i~v~~ 193 (313)
-=+++.+ ++...+..|-.+|+.+++++.
T Consensus 87 PV~lHLDHg~~~e~i~~ai~~GftSVMiD~ 116 (321)
T PRK07084 87 PIVLHLDHGDSFELCKDCIDSGFSSVMIDG 116 (321)
T ss_pred cEEEECCCCCCHHHHHHHHHcCCCEEEeeC
Confidence 3344443 334577778888888888876
No 355
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=23.23 E-value=2e+02 Score=23.82 Aligned_cols=75 Identities=13% Similarity=0.071 Sum_probs=47.7
Q ss_pred CCCCchHH-HHHHHHHHCCCCEEEEeCCchH-----HHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCC
Q 021360 90 VKALPGAN-RLIKHLSCHGVPMALASNSHRA-----TIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM 163 (313)
Q Consensus 90 ~~~~pgv~-e~l~~l~~~g~~~~i~s~~~~~-----~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~ 163 (313)
..+.|++. ++.+.+++.|.+..++...... .++..+ +.+|+.-.|...+|+=+ +..-..+.+.++.+|-
T Consensus 58 y~lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~-e~~gi~~~~P~~~CsL~----~~~~p~i~~F~~~fGk 132 (217)
T PF02593_consen 58 YGLHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQL-EEFGIEVEFPKPFCSLE----ENGNPQIDEFAEYFGK 132 (217)
T ss_pred eccCchhHHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHH-HhcCceeecCccccccC----CCCChhHHHHHHHhCC
Confidence 35667765 6777788899988888766555 566666 67777555555555422 2233466777777886
Q ss_pred CCCcEE
Q 021360 164 EPSSSL 169 (313)
Q Consensus 164 ~~~~~i 169 (313)
+.=++.
T Consensus 133 P~~ei~ 138 (217)
T PF02593_consen 133 PKVEIE 138 (217)
T ss_pred ceEEEE
Confidence 643433
No 356
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=23.04 E-value=64 Score=21.88 Aligned_cols=18 Identities=28% Similarity=0.543 Sum_probs=14.1
Q ss_pred cEEEEecCCccccChHHH
Q 021360 10 SCVILDLDGTLLNTDGMF 27 (313)
Q Consensus 10 k~vifDlDGTL~d~~~~~ 27 (313)
-.++++=|||.++++..+
T Consensus 41 ~~lvL~eDGT~VddEeyF 58 (78)
T PF02017_consen 41 VRLVLEEDGTEVDDEEYF 58 (78)
T ss_dssp CEEEETTTTCBESSCHHH
T ss_pred cEEEEeCCCcEEccHHHH
Confidence 357889999999987543
No 357
>PF03603 DNA_III_psi: DNA polymerase III psi subunit; InterPro: IPR004615 DNA-directed DNA polymerase (2.7.7.7 from EC) catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The enzyme also has 3' to 5' exonuclease activity. It has a core composed of alpha, epsilon and theta chains, that associate with a tau subunit which allows the core dimerization to form the PolIII' complex. PolIII' associates with the gamma complex (gamma, delta, delta', psi and chi chains) and with the beta chain. This family is the psi subunit, the small subunit of the DNA polymerase III holoenzyme in Escherichia coli and related species, whose exact function is not known. It appears to have a narrow taxonomic distribution, being restricted to the gammaproteobacteria.; GO: 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication; PDB: 1EM8_B 3GLI_O 3SXU_B.
Probab=22.92 E-value=1.7e+02 Score=22.02 Aligned_cols=66 Identities=18% Similarity=0.263 Sum_probs=33.2
Q ss_pred HHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEe
Q 021360 101 KHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIE 172 (313)
Q Consensus 101 ~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~vg 172 (313)
..|.+.|+....+..... ... +....+.+....++++++.... .++ .|..+++.+++++++++++.
T Consensus 7 ~~LqeMGItqW~Lr~P~~--L~g--~~~i~lp~~~rLliVs~~~p~~-~~~-L~~dVLrsl~L~~~q~~~lt 72 (128)
T PF03603_consen 7 WLLQEMGITQWQLRRPEV--LQG--EIAISLPESCRLLIVSDELPQL-DDP-LFQDVLRSLKLTPEQVLHLT 72 (128)
T ss_dssp HHHHHCT--EEEES-GGG--TS----S-----TT--EEEE-SS---T-TSH-HHHHHHHHTT--GGGEEEE-
T ss_pred HHHHHcCCCeEEeCCccc--cCC--CccccCcccceEEEEeCCCCCc-cCh-HHHHHHHHcCCCHHHhhccC
Confidence 457888888887764422 111 1223445555778887765432 233 99999999999999998764
No 358
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=22.71 E-value=4.5e+02 Score=24.04 Aligned_cols=44 Identities=11% Similarity=-0.030 Sum_probs=27.3
Q ss_pred cccccCCCccccccCCCCCeEEEEEEEec--C-Ccee---EEEEEecCCccccC
Q 021360 257 PTANLSTEGYSDVLSEHPSGVYFGWAGLS--T-RGVY---KMVMSIGWNPYFDN 304 (313)
Q Consensus 257 ptan~~~~~~~~~~p~~~~gvy~~~~~~~--~-~~~~---~~~~~~g~~p~~~~ 304 (313)
|+..+++.. .++- ..|++.++|... . ++.| .|.+|-..+|+..+
T Consensus 270 ~~l~~EPGR--~iv~--~aG~Lvt~V~~~k~~~~~~~v~vD~gm~~~~rpaly~ 319 (394)
T COG0019 270 VELILEPGR--AIVA--NAGVLVTEVLDVKENGERNFVIVDGGMNDLMRPALYG 319 (394)
T ss_pred CeEEEccch--hhhh--cceeEEEEEEEEEEecCceEEEEechhccCcCHHHcC
Confidence 444555444 3444 369998887742 1 1333 58889999998854
No 359
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=22.62 E-value=3.5e+02 Score=20.50 Aligned_cols=85 Identities=14% Similarity=0.069 Sum_probs=43.3
Q ss_pred HHHHHHHCCCCEEEEe--CCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecC--
Q 021360 99 LIKHLSCHGVPMALAS--NSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDS-- 174 (313)
Q Consensus 99 ~l~~l~~~g~~~~i~s--~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~vgD~-- 174 (313)
+...|++.|+.++-.- .+++++++... + .+. +.+..|.-.+...+....+.+.+++.|+.. ..+++|-.
T Consensus 21 v~~~l~~~GfeVi~LG~~v~~e~~v~aa~-~-~~a----diVglS~l~~~~~~~~~~~~~~l~~~gl~~-~~vivGG~~v 93 (134)
T TIGR01501 21 LDHAFTNAGFNVVNLGVLSPQEEFIKAAI-E-TKA----DAILVSSLYGHGEIDCKGLRQKCDEAGLEG-ILLYVGGNLV 93 (134)
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHH-H-cCC----CEEEEecccccCHHHHHHHHHHHHHCCCCC-CEEEecCCcC
Confidence 3445677787765543 23455555444 2 233 666555544433333334444555666643 23445443
Q ss_pred --HhhHH----HHHHcCCeEEE
Q 021360 175 --VIGVV----AGKAAGMEVVA 190 (313)
Q Consensus 175 --~~Di~----~a~~~G~~~i~ 190 (313)
..|.. .++++|+..+.
T Consensus 94 i~~~d~~~~~~~l~~~Gv~~vF 115 (134)
T TIGR01501 94 VGKQDFPDVEKRFKEMGFDRVF 115 (134)
T ss_pred cChhhhHHHHHHHHHcCCCEEE
Confidence 24543 47888875443
No 360
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=22.61 E-value=5.3e+02 Score=22.67 Aligned_cols=92 Identities=15% Similarity=0.103 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCCCCCChHH--HHHHHHHcC---CCCCcEE
Q 021360 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI--FLEAAKRLN---MEPSSSL 169 (313)
Q Consensus 95 gv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~--~~~~~~~~~---~~~~~~i 169 (313)
.+.+..+.|.. ....+++-......+.... +...+ -.|=.+++ ...|.... +..+.+++| ++.-.+.
T Consensus 86 ~~~dt~~vls~-~~D~iv~R~~~~~~~~~~a-~~~~v----PVINag~~--~~HPtQaL~Dl~Ti~e~~g~~~l~g~~va 157 (311)
T PRK14804 86 DIDLEARYLSR-NVSVIMARLKKHEDLLVMK-NGSQV----PVINGCDN--MFHPCQSLADIMTIALDSPEIPLNQKQLT 157 (311)
T ss_pred cHHHHHHHHHh-cCCEEEEeCCChHHHHHHH-HHCCC----CEEECCCC--CCChHHHHHHHHHHHHHhCCCCCCCCEEE
Confidence 34455566666 4677776655555554333 44333 33333333 23343222 233345566 5677899
Q ss_pred EEecCH----hhHHHHHHcCCeEEEeCCC
Q 021360 170 VIEDSV----IGVVAGKAAGMEVVAVPSL 194 (313)
Q Consensus 170 ~vgD~~----~Di~~a~~~G~~~i~v~~~ 194 (313)
++||+. +.+.++..+|+.+..+.+.
T Consensus 158 ~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~ 186 (311)
T PRK14804 158 YIGVHNNVVNSLIGITAALGIHLTLVTPI 186 (311)
T ss_pred EECCCCcHHHHHHHHHHHcCCEEEEECCC
Confidence 999942 4677788999998888873
No 361
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=22.54 E-value=3.4e+02 Score=20.36 Aligned_cols=12 Identities=17% Similarity=0.050 Sum_probs=7.2
Q ss_pred hHHHHHHcCCeE
Q 021360 177 GVVAGKAAGMEV 188 (313)
Q Consensus 177 Di~~a~~~G~~~ 188 (313)
|....+++|+.-
T Consensus 97 ~~~~l~~~Gvd~ 108 (132)
T TIGR00640 97 DFDELKEMGVAE 108 (132)
T ss_pred hHHHHHHCCCCE
Confidence 566666666643
No 362
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=22.47 E-value=4.8e+02 Score=23.79 Aligned_cols=94 Identities=13% Similarity=0.112 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHCCCCEEEEeCCch--HHHHHHHHhhcCCccccceEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEe
Q 021360 95 GANRLIKHLSCHGVPMALASNSHR--ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIE 172 (313)
Q Consensus 95 gv~e~l~~l~~~g~~~~i~s~~~~--~~~~~~l~~~~~~~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~vg 172 (313)
+...+++..++.++..++...... ..+...+ +..|+ ..+..+.+.....-++...++.++++|++.-....+.
T Consensus 52 d~~~l~~~~~~~~id~vi~~~e~~l~~~~~~~l-~~~gi----~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~ 126 (423)
T TIGR00877 52 DIEALVEFAKKKKIDLAVIGPEAPLVLGLVDAL-EEAGI----PVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYEVFT 126 (423)
T ss_pred CHHHHHHHHHHhCCCEEEECCchHHHHHHHHHH-HHCCC----eEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCeEEEC
Confidence 455566667777776665432211 1112233 44444 2221111111122355777888889999877766665
Q ss_pred cCHhhHHHHHHcCCe-EEEeCC
Q 021360 173 DSVIGVVAGKAAGME-VVAVPS 193 (313)
Q Consensus 173 D~~~Di~~a~~~G~~-~i~v~~ 193 (313)
+...-...++..|.+ +++-+.
T Consensus 127 ~~~~~~~~~~~~g~P~~VvKp~ 148 (423)
T TIGR00877 127 DPEEALSYIQEKGAPAIVVKAD 148 (423)
T ss_pred CHHHHHHHHHhcCCCeEEEEEC
Confidence 543334557788888 666554
No 363
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=21.97 E-value=1.1e+02 Score=27.58 Aligned_cols=16 Identities=31% Similarity=0.229 Sum_probs=13.1
Q ss_pred CccEEEEecCCccccC
Q 021360 8 LMSCVILDLDGTLLNT 23 (313)
Q Consensus 8 ~~k~vifDlDGTL~d~ 23 (313)
..++|-||=|+||++.
T Consensus 146 ~L~LvTFDgDvTLY~D 161 (408)
T PF06437_consen 146 GLKLVTFDGDVTLYED 161 (408)
T ss_pred CceEEEEcCCcccccC
Confidence 5788889999999864
No 364
>PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor. Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA.
Probab=21.87 E-value=2.1e+02 Score=26.25 Aligned_cols=44 Identities=18% Similarity=0.133 Sum_probs=34.1
Q ss_pred hHHHHHHHHHcCCCCCcEEEEecCHhhH----HHHHHcCCeEEEeCCC
Q 021360 151 PDIFLEAAKRLNMEPSSSLVIEDSVIGV----VAGKAAGMEVVAVPSL 194 (313)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~i~vgD~~~Di----~~a~~~G~~~i~v~~~ 194 (313)
.+...++++++|-..+.+++|||+..|+ .++-..|+.+.++..+
T Consensus 208 ~~~Va~~Akk~gkGveaI~~vGDGyddLI~G~~a~id~~vDvfVvEGg 255 (505)
T PF10113_consen 208 MEEVAELAKKYGKGVEAIMHVGDGYDDLITGLKACIDMGVDVFVVEGG 255 (505)
T ss_pred HHHHHHHHHHhCCCceEEEEecCChHHHHHHHHHHHhcCCcEEEEeCC
Confidence 3445667788899999999999999764 5567778888888763
No 365
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=21.41 E-value=5.4e+02 Score=22.25 Aligned_cols=91 Identities=15% Similarity=0.132 Sum_probs=46.4
Q ss_pred HHHHHHHHHCCCCEEEEeCCchHHHHHHHH--hhcCCccccceEEecCCCC-CCCCC---hHHHHHHHHHcCCCCCcEEE
Q 021360 97 NRLIKHLSCHGVPMALASNSHRATIESKIS--YQHGWNESFSVIVGSDEVR-TGKPS---PDIFLEAAKRLNMEPSSSLV 170 (313)
Q Consensus 97 ~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~--~~~~~~~~f~~v~~~~~~~-~~kp~---~~~~~~~~~~~~~~~~~~i~ 170 (313)
.++|+..++.+|-+..+.-.+.+.++..+. +..+. ..++-..... ...+- ...+..++++..++ =+++
T Consensus 2 k~lL~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~s----PvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VP--V~lH 75 (276)
T cd00947 2 KELLKKAREGGYAVGAFNINNLETLKAILEAAEETRS----PVILQISEGAIKYAGLELLVAMVKAAAERASVP--VALH 75 (276)
T ss_pred HHHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCC----CEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCC--EEEE
Confidence 466777777777777766666666666552 22332 2333222111 11111 12233333343332 3344
Q ss_pred EecC--HhhHHHHHHcCCeEEEeCC
Q 021360 171 IEDS--VIGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 171 vgD~--~~Di~~a~~~G~~~i~v~~ 193 (313)
.+-+ ..++..|-.+|+.+++++.
T Consensus 76 LDH~~~~~~i~~ai~~GftSVMiD~ 100 (276)
T cd00947 76 LDHGSSFELIKRAIRAGFSSVMIDG 100 (276)
T ss_pred CCCCCCHHHHHHHHHhCCCEEEeCC
Confidence 4333 3567777788888888876
No 366
>PLN03017 trehalose-phosphatase
Probab=21.28 E-value=1.5e+02 Score=26.77 Aligned_cols=36 Identities=14% Similarity=-0.066 Sum_probs=28.6
Q ss_pred CChHHHHHHHHHcCCCC---CcEEEEecCHhhHHHHHHc
Q 021360 149 PSPDIFLEAAKRLNMEP---SSSLVIEDSVIGVVAGKAA 184 (313)
Q Consensus 149 p~~~~~~~~~~~~~~~~---~~~i~vgD~~~Di~~a~~~ 184 (313)
.+...++.+++.+++.. .-.+|+||...|-.+.+.+
T Consensus 283 dKG~Av~~LL~~l~~~~~~~~~pvyiGDD~TDEDaF~~L 321 (366)
T PLN03017 283 DKGKALEFLLESLGFGNTNNVFPVYIGDDRTDEDAFKML 321 (366)
T ss_pred CHHHHHHHHHHhcccccCCCceEEEeCCCCccHHHHHHH
Confidence 44578899999888763 3589999999998887765
No 367
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=21.11 E-value=5.6e+02 Score=22.31 Aligned_cols=95 Identities=11% Similarity=0.103 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHCCCCEEEEeCCchHHHHHHHH--hhcCCccccceEEecCCCCCCC-CChHHH----HHHHHHcCCCCCc
Q 021360 95 GANRLIKHLSCHGVPMALASNSHRATIESKIS--YQHGWNESFSVIVGSDEVRTGK-PSPDIF----LEAAKRLNMEPSS 167 (313)
Q Consensus 95 gv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~--~~~~~~~~f~~v~~~~~~~~~k-p~~~~~----~~~~~~~~~~~~~ 167 (313)
.+.++|+..++.+|-+..+.-.+.+.++..+. +..+. ..|+-.......- ...+.+ ..++++.+++.-=
T Consensus 5 ~~k~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~s----PvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV 80 (288)
T TIGR00167 5 DVKELLQDAKEEGYAIPAFNINNLETINAVLEAAAEEKS----PVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPV 80 (288)
T ss_pred cHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCC----CEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcE
Confidence 46788999999999888887777787777762 33333 3343322221111 123333 3344454333333
Q ss_pred EEEEecC--HhhHHHHHHcCCeEEEeCC
Q 021360 168 SLVIEDS--VIGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 168 ~i~vgD~--~~Di~~a~~~G~~~i~v~~ 193 (313)
+++.+-+ ..++..|-++|+.+++++.
T Consensus 81 ~lHLDHg~~~e~i~~ai~~GftSVMiDg 108 (288)
T TIGR00167 81 ALHLDHGASEEDCAQAVKAGFSSVMIDG 108 (288)
T ss_pred EEECCCCCCHHHHHHHHHcCCCEEEecC
Confidence 4554333 3578888999999999987
No 368
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=21.11 E-value=3.9e+02 Score=22.69 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=10.8
Q ss_pred HHHHHHHHHHCCCCEEEEeCCc
Q 021360 96 ANRLIKHLSCHGVPMALASNSH 117 (313)
Q Consensus 96 v~e~l~~l~~~g~~~~i~s~~~ 117 (313)
++.++.++...|.+++=++...
T Consensus 69 Vkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 69 VKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred HHHHHHHHhhcCceEEEECHHH
Confidence 4445555555555554444443
No 369
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=21.11 E-value=3.3e+02 Score=25.06 Aligned_cols=96 Identities=19% Similarity=0.242 Sum_probs=43.8
Q ss_pred HHHHHHHHHHCCCCEEEEeCC--chHHHHHHHHhhcCCccccceEE--ecCCCC----CCCCCh----HHHHHHHHHcCC
Q 021360 96 ANRLIKHLSCHGVPMALASNS--HRATIESKISYQHGWNESFSVIV--GSDEVR----TGKPSP----DIFLEAAKRLNM 163 (313)
Q Consensus 96 v~e~l~~l~~~g~~~~i~s~~--~~~~~~~~l~~~~~~~~~f~~v~--~~~~~~----~~kp~~----~~~~~~~~~~~~ 163 (313)
+.++++ .++.|-+..+.|-+ ....++..+ ++ ........++ +++.+. ..--.| ++...++++.|+
T Consensus 4 l~~lv~-~~k~G~~~gI~SVCsahp~VieAAl-~~-a~~~~~pvLiEAT~NQVnq~GGYTGmtP~dF~~~V~~iA~~~g~ 80 (424)
T PF08013_consen 4 LKELVK-RHKAGEPVGIYSVCSAHPLVIEAAL-ER-AKEDDSPVLIEATSNQVNQFGGYTGMTPADFRDFVREIADEVGF 80 (424)
T ss_dssp -HHHHH-HHHTT--B-EEEE----HHHHHHHH-HH-CCCS-S-EEEEEETTTCSTT-TTTTB-HHHHHHHHHHHHHHCT-
T ss_pred HHHHHH-HHhCCCCCceEEecCCCHHHHHHHH-HH-HHhcCCeEEEEeccccccccCCcCCCCHHHHHHHHHHHHHHcCC
Confidence 445555 45666667666543 333455555 32 2222223322 333332 111133 345567789999
Q ss_pred CCCcEEEEecCH---------hhHHH---------HHHcCCeEEEeCCC
Q 021360 164 EPSSSLVIEDSV---------IGVVA---------GKAAGMEVVAVPSL 194 (313)
Q Consensus 164 ~~~~~i~vgD~~---------~Di~~---------a~~~G~~~i~v~~~ 194 (313)
+.++++..||+. .+-.| --++|+.-+.++..
T Consensus 81 ~~~~iiLGGDHLGP~~w~~lpaeeAM~~A~~li~ayv~AGF~KIHLD~S 129 (424)
T PF08013_consen 81 PRDRIILGGDHLGPNPWQHLPAEEAMAKAKELIRAYVEAGFTKIHLDCS 129 (424)
T ss_dssp -GGGEEEEEEEESSCCCTTSBHHHHHHHHHHHHHHHHCTT--EEEE---
T ss_pred chhhEEecCCCCCcccccCCCHHHHHHHHHHHHHHHHHcCCceEeecCC
Confidence 999999999974 23333 34579988888873
No 370
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=20.97 E-value=1e+02 Score=25.88 Aligned_cols=31 Identities=16% Similarity=0.067 Sum_probs=26.3
Q ss_pred cCCCCchHHHHHHHHHHCCCCEEEEeCCchH
Q 021360 89 KVKALPGANRLIKHLSCHGVPMALASNSHRA 119 (313)
Q Consensus 89 ~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~ 119 (313)
+..+.+++.++++.+++.|+++.+-||+...
T Consensus 82 EPll~~~l~~li~~l~~~g~~v~leTNGtl~ 112 (238)
T TIGR03365 82 NPALQKPLGELIDLGKAKGYRFALETQGSVW 112 (238)
T ss_pred chhhhHhHHHHHHHHHHCCCCEEEECCCCCc
Confidence 4455688999999999999999999999753
No 371
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=20.95 E-value=9.6e+02 Score=25.33 Aligned_cols=92 Identities=20% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCEEEEeCCc-------------------hHHHHHHHHhhcCCccccceEEecCCCCCCC---------
Q 021360 97 NRLIKHLSCHGVPMALASNSH-------------------RATIESKISYQHGWNESFSVIVGSDEVRTGK--------- 148 (313)
Q Consensus 97 ~e~l~~l~~~g~~~~i~s~~~-------------------~~~~~~~l~~~~~~~~~f~~v~~~~~~~~~k--------- 148 (313)
.++++.|++.|+.++++...+ .+.+...+ ++.++ |.++.......+-
T Consensus 30 ~q~~kalke~G~~vi~v~~np~~~~~~~~~aD~~y~~p~~~~~v~~ii-~~e~~----DaIlp~~gg~~~l~la~~l~~~ 104 (1050)
T TIGR01369 30 SQACKALKEEGYRVILVNSNPATIMTDPEMADKVYIEPLTPEAVEKII-EKERP----DAILPTFGGQTALNLAVELEES 104 (1050)
T ss_pred HHHHHHHHHcCCEEEEEecchhhccCChhcCCEEEECCCCHHHHHHHH-HHhCC----CEEEECCCChhHHHHHhhHHHH
Q ss_pred ---------------------CChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCC
Q 021360 149 ---------------------PSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 149 ---------------------p~~~~~~~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~ 193 (313)
-+...+++.+++.|++.-....+.+...-...++..|.++++-+.
T Consensus 105 ~~le~~Gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~igyPvIVKP~ 170 (1050)
T TIGR01369 105 GVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPESEIAHSVEEALAAAKEIGYPVIVRPA 170 (1050)
T ss_pred hHHHHCCCEEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHhCCCeEEECC
No 372
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=20.86 E-value=5.6e+02 Score=22.28 Aligned_cols=93 Identities=14% Similarity=0.168 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHCCCCEEEEeCCchHHHHHHHH--hhcCCccccceEEecCCCC----CC-CCChHHHHHHHHHcCCCCCc
Q 021360 95 GANRLIKHLSCHGVPMALASNSHRATIESKIS--YQHGWNESFSVIVGSDEVR----TG-KPSPDIFLEAAKRLNMEPSS 167 (313)
Q Consensus 95 gv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~--~~~~~~~~f~~v~~~~~~~----~~-kp~~~~~~~~~~~~~~~~~~ 167 (313)
..+++|+..++.||-+.-+.-.+-+++...++ +..+- ..|+-...-. .+ .--......++++++++ =
T Consensus 5 ~~~~ll~~Ake~~yAvpAfN~~nlE~~~AileaA~e~~s----PvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vP--V 78 (286)
T COG0191 5 SMKELLDKAKENGYAVPAFNINNLETLQAILEAAEEEKS----PVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVP--V 78 (286)
T ss_pred cHHHHHHHHHHcCCceeeeeecCHHHHHHHHHHHHHhCC----CEEEEecccHHHHhchHHHHHHHHHHHHHHCCCC--E
Confidence 34788999999999888887777788877773 22222 3333322211 11 11134455666777755 3
Q ss_pred EEEE--ecCHhhHHHHHHcCCeEEEeCC
Q 021360 168 SLVI--EDSVIGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 168 ~i~v--gD~~~Di~~a~~~G~~~i~v~~ 193 (313)
+++. |++..++..+-++|+.+++++.
T Consensus 79 ~lHlDHg~~~~~~~~ai~~GFsSvMiDg 106 (286)
T COG0191 79 ALHLDHGASFEDCKQAIRAGFSSVMIDG 106 (286)
T ss_pred EEECCCCCCHHHHHHHHhcCCceEEecC
Confidence 4444 5567899999999999999987
No 373
>PF08889 WbqC: WbqC-like protein family; InterPro: IPR014985 This family of proteins are functionally uncharacterised. However, it is found in an O-antigen gene cluster in Escherichia coli [] and other bacteria [] suggesting a role in O-antigen production. It has been suggested that wbnG may code for a glycine transferase [].
Probab=20.25 E-value=5e+02 Score=21.45 Aligned_cols=111 Identities=14% Similarity=0.053 Sum_probs=65.2
Q ss_pred HHHHHHHHhhhccCCCCchHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhhcCCccccceEEecCCCCC-CCCChHHHH
Q 021360 77 NEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRT-GKPSPDIFL 155 (313)
Q Consensus 77 ~~~~~~~~~~~~~~~~~pgv~e~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~~f~~v~~~~~~~~-~kp~~~~~~ 155 (313)
......++..+...+.++.+.+.++.+-.... ..++.-....++..+ +.+|+. ..++.+.+... ...+.+.+.
T Consensus 74 ~kh~~~i~~aY~kaP~f~~~~~~ie~~~~~~~--~~L~dln~~~l~~i~-~~Lgi~---~~i~~sS~l~~~~~~~~~~vi 147 (219)
T PF08889_consen 74 KKHWRSIEQAYRKAPYFEEYEPLIEPLYEKPY--DNLADLNEASLEWIC-DYLGID---TPIVRSSELNLPEGKKSERVI 147 (219)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHhCCc--ccHHHHHHHHHHHHH-HHhCCC---CeEEeccccccCCCCchHHHH
Confidence 34444555566778888889899888877533 234434445555555 788885 23333333333 333456777
Q ss_pred HHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEeCC
Q 021360 156 EAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193 (313)
Q Consensus 156 ~~~~~~~~~~~~~i~vgD~~~Di~~a~~~G~~~i~v~~ 193 (313)
.+++++|.+.==.-..|-..-|-+..++.|+.+.....
T Consensus 148 ~i~~~~ga~~Yi~~~gg~~y~d~~~F~~~gi~l~f~~~ 185 (219)
T PF08889_consen 148 DICKALGADTYINGPGGRDYYDPEEFEENGIELEFQEY 185 (219)
T ss_pred HHHHHcCCCeeecCccchhccCHHHHHhcCCceeeecc
Confidence 88888776511111123334567778888887777655
No 374
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=20.05 E-value=7.8e+02 Score=23.61 Aligned_cols=35 Identities=11% Similarity=0.152 Sum_probs=24.5
Q ss_pred HHcCCCC-CcEEEEecCH-hhHHHHHH----cCCeEEEeCC
Q 021360 159 KRLNMEP-SSSLVIEDSV-IGVVAGKA----AGMEVVAVPS 193 (313)
Q Consensus 159 ~~~~~~~-~~~i~vgD~~-~Di~~a~~----~G~~~i~v~~ 193 (313)
.+.+.+. +-++.+|-+. .|+..+-+ .|++.+.+++
T Consensus 263 ~~~~~~r~D~IIAIGGGsv~D~AKfvA~~y~rGi~~i~vPT 303 (542)
T PRK14021 263 GNEGFTRSDAIVGLGGGAATDLAGFVAATWMRGIRYVNCPT 303 (542)
T ss_pred HhcCCCCCcEEEEEcChHHHHHHHHHHHHHHcCCCEEEeCC
Confidence 4445533 4456688866 69887665 5999999988
Done!