BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021361
(313 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blu
pdb|3BAZ|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blumei In Complex With Nadp+
Length = 333
Score = 375 bits (962), Expect = e-104, Method: Compositional matrix adjust.
Identities = 183/313 (58%), Positives = 217/313 (69%)
Query: 1 MEKIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAE 60
ME IGVLM PMS YLEQEL RF LF+ WTQ + F + +IRAVVG++ GADAE
Sbjct: 21 MEAIGVLMMCPMSTYLEQELDKRFKLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAE 80
Query: 61 LIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVC 120
LID+LP LEIV+S+SVG VRVTNTP RR+C
Sbjct: 81 LIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRIC 140
Query: 121 EFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD 180
E D++V+ G WK G F+L +KFSGK VGI+GLGRIG A+A+R EAF CPISY SRS+K +
Sbjct: 141 ECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPN 200
Query: 181 ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPE 240
NY YY ++++LASN IL+VAC LT ET HI+NR+VIDALGP G+LINIGRG H+DEPE
Sbjct: 201 TNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPE 260
Query: 241 LVSXXXXXXXXXXXXDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLV 300
LVS DV+E EPEVPE++ GL NVVLLPHVGS T ET K MADLV+ NL
Sbjct: 261 LVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLE 320
Query: 301 AHFSNKPLLTPVI 313
AHFS KPLLTPV+
Sbjct: 321 AHFSGKPLLTPVV 333
>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium
Meliloti
Length = 340
Score = 165 bits (418), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 147/305 (48%), Gaps = 2/305 (0%)
Query: 3 KIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELI 62
K +L+ P ++ EL +++ +L+ Q+ + +IRAV G E
Sbjct: 30 KPDLLLVEPXXPFVXDELQRNYSVHRLY-QAADRPALEAALPSIRAVATGGGAGLSNEWX 88
Query: 63 DSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEF 122
+ LP+L I+A VG + VT TP RRV +
Sbjct: 89 EKLPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALXLAVLRRVGDG 148
Query: 123 DEFVKSGKWKNG-HFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA 181
D V+ G+W G LG GK +G++GLG+IG A+A R EAFG + Y +RS S
Sbjct: 149 DRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGXSVRYWNRSTLSGV 208
Query: 182 NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPEL 241
++ + + +DLA + +L V + + T +IV+ ++ ALGP GI++N+ RG +DE L
Sbjct: 209 DWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDAL 268
Query: 242 VSXXXXXXXXXXXXDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVA 301
+ DV+ NEP + + N VL PH GS T ET A LV+ NL A
Sbjct: 269 IEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLXPHQGSATVETRXAXGKLVLANLAA 328
Query: 302 HFSNK 306
HF+ +
Sbjct: 329 HFAGE 333
>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|C Chain C, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|D Chain D, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|E Chain E, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|F Chain F, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBZ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
pdb|2DBZ|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
Length = 334
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 130/253 (51%), Gaps = 9/253 (3%)
Query: 58 DAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXR 117
D E+ ++ P L IVA+Y+VG + VTNTP R
Sbjct: 58 DKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATAR 117
Query: 118 RVCEFDEFVKSGKWK------NGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPIS 171
V + D FV+SG+WK + + LG GK++GI+GLGRIG AIAKR + F I
Sbjct: 118 HVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRIL 177
Query: 172 YHSRSEKSDANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILI 228
Y+SR+ K + + + + DL +++A LT ET+H++N + + + + ILI
Sbjct: 178 YYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILI 237
Query: 229 NIGRGAHIDEPELVSXXXXXXXXXXXXDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETS 288
NI RG +D LV DV+E EP E++ L+NVVL PH+GS +
Sbjct: 238 NIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAR 297
Query: 289 KAMADLVIENLVA 301
+ MA+LV +NL+A
Sbjct: 298 EGMAELVAKNLIA 310
>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41)
Length = 334
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 128/253 (50%), Gaps = 9/253 (3%)
Query: 58 DAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXR 117
D E+ ++ P L IVA+Y+VG + VTNTP R
Sbjct: 58 DKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATAR 117
Query: 118 RVCEFDEFVKSGKWK------NGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPIS 171
V + D FV+SG+WK + + LG GK++GI+GLGRIG AIAKR + F I
Sbjct: 118 HVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNXRIL 177
Query: 172 YHSRSEKSDANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILI 228
Y+SR+ K + + + + DL +++A LT ET+H++N + + + ILI
Sbjct: 178 YYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLXKKTAILI 237
Query: 229 NIGRGAHIDEPELVSXXXXXXXXXXXXDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETS 288
NI RG +D LV DV+E EP E++ L+NVVL PH+GS +
Sbjct: 238 NIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAR 297
Query: 289 KAMADLVIENLVA 301
+ A+LV +NL+A
Sbjct: 298 EGXAELVAKNLIA 310
>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|B Chain B, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|C Chain C, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|D Chain D, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
Length = 345
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 113/249 (45%), Gaps = 6/249 (2%)
Query: 59 AELIDSL-PTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXR 117
AE+I L P L+ +A+ SVG ++V +TP R
Sbjct: 85 AEVIRKLQPGLKTIATLSVGYDHIDXAAARSLGIKVLHTPDVLSDACAEIAXLLVLNACR 144
Query: 118 RVCEFDEFVKSGKWKN-GHFEL-GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSR 175
R E D V+SG W G +L G +G+ +GI G GRIG AIA R FG I YH+R
Sbjct: 145 RGYEADRXVRSGSWPGWGPTQLLGXGLTGRRLGIFGXGRIGRAIATRARGFGLAIHYHNR 204
Query: 176 SEKSDA---NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGR 232
+ S A Y+ + L I ++A E ++ I + ++INI R
Sbjct: 205 TRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISR 264
Query: 233 GAHIDEPELVSXXXXXXXXXXXXDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMA 292
G I++ L+ DV+ NEP + + L+N+ L PH+GS T ET A
Sbjct: 265 GDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRDAXG 324
Query: 293 DLVIENLVA 301
L+I+ + A
Sbjct: 325 WLLIQGIEA 333
>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|B Chain B, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|C Chain C, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|D Chain D, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
Length = 311
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 124/259 (47%), Gaps = 6/259 (2%)
Query: 58 DAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXR 117
DAE++D L+++A YSVG +RVT+TP R
Sbjct: 56 DAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVAR 115
Query: 118 RVCEFDEFVKSGKWKNGHFELGSKFSGKSVGI--VGLGRIGTAIAKRVEAFGCPISYHSR 175
RV E + + G WK H EL + + + VG+GRIG A+AKR AFG + YH+R
Sbjct: 116 RVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHAR 175
Query: 176 SEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAH 235
+ K Y + + + +L ++ + LT ETH ++NR+ + A+ IL+N RGA
Sbjct: 176 TPKP-LPYPFLS-LEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGAL 233
Query: 236 IDEPELVSXXXXXXXXXXXXDVYENEPEVPEQML-GLNNVVLLPHVGSDTEETSKAMADL 294
+D LV DV + EP P L L N V+ PH+GS T + MA++
Sbjct: 234 VDTEALVE-ALRGHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEV 292
Query: 295 VIENLVAHFSNKPLLTPVI 313
+ENL+A + PV+
Sbjct: 293 AVENLLAVLEGREPPNPVV 311
>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|B Chain B, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|C Chain C, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|D Chain D, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2WWR|A Chain A, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|B Chain B, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|C Chain C, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|D Chain D, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
Length = 330
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 117/259 (45%), Gaps = 8/259 (3%)
Query: 58 DAELIDSL-PTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXX 116
D ++D+ L+++++ SVG +RV TP
Sbjct: 66 DKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTC 125
Query: 117 RRVCEFDEFVKSGKWKNGH--FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYH 173
RR+ E E VK+G W + + G + +VGI+GLGRIG AIA+R++ FG Y
Sbjct: 126 RRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYT 185
Query: 174 SRSEKSDANYKYYTNII---DLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINI 230
R + + ++ + +LA+ ++VACSLT T + N+ + + + INI
Sbjct: 186 GRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINI 245
Query: 231 GRGAHIDEPELVSXXXXXXXXXXXXDVYENEP-EVPEQMLGLNNVVLLPHVGSDTEETSK 289
RG +++ +L DV EP +L L N V+LPH+GS T T
Sbjct: 246 SRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRN 305
Query: 290 AMADLVIENLVAHFSNKPL 308
M+ L NL+A +P+
Sbjct: 306 TMSLLAANNLLAGLRGEPM 324
>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|B Chain B, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|C Chain C, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|D Chain D, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2Q50|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
Length = 328
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 114/258 (44%), Gaps = 8/258 (3%)
Query: 58 DAELIDSL-PTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXX 116
D ++D+ L+++++ SVG +RV TP
Sbjct: 64 DKRILDAAGANLKVISTXSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTC 123
Query: 117 RRVCEFDEFVKSGKWKNGH--FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYH 173
RR+ E E VK+G W + + G + +VGI+GLGRIG AIA+R++ FG Y
Sbjct: 124 RRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYT 183
Query: 174 SRSEKSDANYKYYTNII---DLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINI 230
R + + ++ + +LA+ ++VACSLT T + N+ + + INI
Sbjct: 184 GRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKXKETAVFINI 243
Query: 231 GRGAHIDEPELVSXXXXXXXXXXXXDVYENEP-EVPEQMLGLNNVVLLPHVGSDTEETSK 289
RG +++ +L DV EP +L L N V+LPH+GS T T
Sbjct: 244 SRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRN 303
Query: 290 AMADLVIENLVAHFSNKP 307
+ L NL+A +P
Sbjct: 304 TXSLLAANNLLAGLRGEP 321
>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
pdb|1GDH|B Chain B, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
Length = 320
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 105/241 (43%), Gaps = 8/241 (3%)
Query: 60 ELIDSLP-TLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRR 118
E+ID +P ++ +++YS+G ++V N P RR
Sbjct: 59 EVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARR 118
Query: 119 VCEFDEFVKSGKWKNGH-FEL-GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISY---H 173
E ++ +++ W EL G K K++GI G G IG A+AKR + F I Y H
Sbjct: 119 AGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTH 178
Query: 174 SRSEKSDANYK--YYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIG 231
S +A+Y+ ++ ++ L S Q + T ET + N+ I +L I++N
Sbjct: 179 RASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTA 238
Query: 232 RGAHIDEPELVSXXXXXXXXXXXXDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAM 291
RG +D +V+ DV+ EP + E L N L PH+GS + + M
Sbjct: 239 RGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDM 298
Query: 292 A 292
A
Sbjct: 299 A 299
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|B Chain B, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|C Chain C, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|D Chain D, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
Length = 333
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 114/251 (45%), Gaps = 12/251 (4%)
Query: 60 ELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRV 119
E++++ L++++ +S G + VT R++
Sbjct: 57 EVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKI 116
Query: 120 CEFDEFVKSGKWKNGHFELGSKFS------GKSVGIVGLGRIGTAIAKRVEAFGCPISYH 173
D+F++ G+W++ H ++ + F GK VGI+G+G IG AIA+R+ FG + Y
Sbjct: 117 HYADKFIRRGEWES-HAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYW 175
Query: 174 SRSEKSDANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINI 230
SR K + + Y +I +L I+I+A LT +T+HI+N + + L L+NI
Sbjct: 176 SRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKL-EGKYLVNI 234
Query: 231 GRGAHIDEPELVSXXXXXXXXXXXXDVYENEPEVPEQMLGLN-NVVLLPHVGSDTEETSK 289
GRGA +DE + DV+E EP ++ VL PH E +
Sbjct: 235 GRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQE 294
Query: 290 AMADLVIENLV 300
+ +ENL+
Sbjct: 295 DVGFRAVENLL 305
>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
pdb|3DDN|B Chain B, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
Length = 528
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 101/234 (43%), Gaps = 6/234 (2%)
Query: 58 DAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXR 117
DAE++ + P L+IVA VG V V N P R
Sbjct: 56 DAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASR 115
Query: 118 RVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPI----SYH 173
++ D ++ WK F G++ GK+VG+VGLGRIG +A+R+ AFG + Y
Sbjct: 116 QIPAADASLREHTWKRSSFS-GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYV 174
Query: 174 SRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRG 233
S + + + + + DL + + V T ET +++++ + P I++N RG
Sbjct: 175 SPARAAQLGIELLS-LDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARG 233
Query: 234 AHIDEPELVSXXXXXXXXXXXXDVYENEPEVPEQMLGLNNVVLLPHVGSDTEET 287
+DE L DV+ EP + L VV+ PH+G+ T E
Sbjct: 234 GLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEA 287
>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|1YGY|B Chain B, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|3DC2|A Chain A, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
pdb|3DC2|B Chain B, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
Length = 529
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 101/234 (43%), Gaps = 6/234 (2%)
Query: 58 DAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXR 117
DAE++ + P L+IVA VG V V N P R
Sbjct: 57 DAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASR 116
Query: 118 RVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPI----SYH 173
++ D ++ WK F G++ GK+VG+VGLGRIG +A+R+ AFG + Y
Sbjct: 117 QIPAADASLREHTWKRSSFS-GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYV 175
Query: 174 SRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRG 233
S + + + + + DL + + V T ET +++++ + P I++N RG
Sbjct: 176 SPARAAQLGIELLS-LDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARG 234
Query: 234 AHIDEPELVSXXXXXXXXXXXXDVYENEPEVPEQMLGLNNVVLLPHVGSDTEET 287
+DE L DV+ EP + L VV+ PH+G+ T E
Sbjct: 235 GLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEA 288
>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
pdb|4E5M|B Chain B, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
Length = 329
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 104/239 (43%), Gaps = 15/239 (6%)
Query: 58 DAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXR 117
DA+ + + P L ++ G V +T P R
Sbjct: 58 DADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 117
Query: 118 RVCEFDEFVKSGKWKNGHFEL-GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS 176
+ D FV+SG+++ G+ +VG +G+G IG A+A R++ +G + YH+R
Sbjct: 118 HLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHAR- 176
Query: 177 EKSDANYKYYTNIIDLA-----SNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIG 231
+ D + + +A ++ +++A L +T H+VN +++ + P +L+N
Sbjct: 177 KALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPC 236
Query: 232 RGAHIDEPELVSXXXXXXXXXXXXDVYENE----PEVPEQ----MLGLNNVVLLPHVGS 282
RG+ +DE +++ DV+E E + P+Q +L N + PH+GS
Sbjct: 237 RGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGS 295
>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|B Chain B, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|C Chain C, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|D Chain D, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|E Chain E, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|F Chain F, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
Length = 332
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 104/239 (43%), Gaps = 15/239 (6%)
Query: 58 DAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXR 117
DA+ + + P L ++ G V +T P R
Sbjct: 58 DADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 117
Query: 118 RVCEFDEFVKSGKWKNGHFEL-GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS 176
+ D FV+SG+++ G+ +VG +G+G IG A+A R++ +G + YH+R
Sbjct: 118 HLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHAR- 176
Query: 177 EKSDANYKYYTNIIDLA-----SNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIG 231
+ D + + +A ++ +++A L +T H+VN +++ + P +L+N
Sbjct: 177 KALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPC 236
Query: 232 RGAHIDEPELVSXXXXXXXXXXXXDVYENE----PEVPEQ----MLGLNNVVLLPHVGS 282
RG+ +DE +++ DV+E E + P+Q +L N + PH+GS
Sbjct: 237 RGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGS 295
>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
pdb|2G76|B Chain B, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
Length = 335
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 102/253 (40%), Gaps = 4/253 (1%)
Query: 59 AELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRR 118
A++I++ L++V G + V NTP R+
Sbjct: 81 ADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQ 140
Query: 119 VCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHS--R 175
+ + +K GKW+ F +G++ +GK++GI+GLGRIG +A R+++FG I Y
Sbjct: 141 IPQATASMKDGKWERKKF-MGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIIS 199
Query: 176 SEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAH 235
E S + + ++ C + V L T ++N ++N RG
Sbjct: 200 PEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGI 259
Query: 236 IDEPELVSXXXXXXXXXXXXDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLV 295
+DE L+ DV+ EP ++ NV+ PH+G+ T+E + +
Sbjct: 260 VDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCGEEI 319
Query: 296 IENLVAHFSNKPL 308
V K L
Sbjct: 320 AVQFVDMVKGKSL 332
>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
Length = 329
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 103/239 (43%), Gaps = 15/239 (6%)
Query: 58 DAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXR 117
DA+ + + P L ++ G V +T P R
Sbjct: 58 DADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 117
Query: 118 RVCEFDEFVKSGKWKNGHFEL-GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS 176
+ D FV+SGK++ G+ +VG +G+G IG A+A R++ +G + YH +
Sbjct: 118 HLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHE-A 176
Query: 177 EKSDANYKYYTNIIDLA-----SNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIG 231
+ D + + +A ++ +++A L +T H+VN +++ + P +L+N
Sbjct: 177 KALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPC 236
Query: 232 RGAHIDEPELVSXXXXXXXXXXXXDVYENE----PEVPEQ----MLGLNNVVLLPHVGS 282
RG+ +DE +++ DV+E E + P+Q +L N + PH+GS
Sbjct: 237 RGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGS 295
>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|E Chain E, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|F Chain F, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|G Chain G, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|H Chain H, Thermostable Phosphite Dehydrogenase In Complex With Nad
Length = 330
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 103/239 (43%), Gaps = 15/239 (6%)
Query: 58 DAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXR 117
DA+ + + P L ++ G V +T P R
Sbjct: 58 DADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 117
Query: 118 RVCEFDEFVKSGKWKNGHFEL-GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS 176
+ D FV+SGK++ G+ +VG +G+G IG A+A R++ +G + YH +
Sbjct: 118 HLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHE-A 176
Query: 177 EKSDANYKYYTNIIDLA-----SNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIG 231
+ D + + +A ++ +++A L +T H+VN +++ + P +L+N
Sbjct: 177 KALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPC 236
Query: 232 RGAHIDEPELVSXXXXXXXXXXXXDVYENE----PEVPEQ----MLGLNNVVLLPHVGS 282
RG+ +DE +++ DV+E E + P+Q +L N + PH+GS
Sbjct: 237 RGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGS 295
>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
pdb|1WWK|B Chain B, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
Length = 307
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/306 (24%), Positives = 128/306 (41%), Gaps = 10/306 (3%)
Query: 1 MEKIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAE 60
M+++ VL+ P+ Q L L ++ + E + A++ +K
Sbjct: 1 MKRMKVLVAAPLHEKAIQVLK-DAGLEVIYEEYPDEDRLVELVKDVEAIIVRSKPKVTRR 59
Query: 61 LIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVC 120
+I+S P L+++A VG + V N P R++
Sbjct: 60 VIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIA 119
Query: 121 EFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPI----SYHSRS 176
D ++ G W +G + GK++GI+G GRIG +AK A G I Y +
Sbjct: 120 FADRKMREGVWAKKEA-MGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNEE 178
Query: 177 EKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHI 236
+ N K+ ++ L ++ + L E T+H++N + + + + ILIN RG +
Sbjct: 179 RAKEVNGKF-VDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVV 237
Query: 237 DEPELVSXXXXXXXXXXXXDVYENEPEVPEQ--MLGLNNVVLLPHVGSDTEETSKAMADL 294
D LV DV+E EP +P+ + +NVVL PH+G+ T E +
Sbjct: 238 DTNALVKALKEGWIAGAGLDVFEEEP-LPKDHPLTKFDNVVLTPHIGASTVEAQERAGVE 296
Query: 295 VIENLV 300
V E +V
Sbjct: 297 VAEKVV 302
>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|B Chain B, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|C Chain C, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|D Chain D, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|E Chain E, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|F Chain F, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
Length = 334
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 15/239 (6%)
Query: 58 DAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXR 117
DA+ + + P L ++ G V +T P R
Sbjct: 59 DADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 118
Query: 118 RVCEFDEFVKSGKWKNGHFEL-GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS 176
+ D FV+SG+++ G+ +VG +G G IG A A R++ +G + YH+ +
Sbjct: 119 HLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGXGAIGLAXADRLQGWGATLQYHA-A 177
Query: 177 EKSDANYKYYTNIIDLA-----SNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIG 231
+ D + + +A ++ +++A L +T H+VN +++ + P +L+N
Sbjct: 178 KALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPC 237
Query: 232 RGAHIDEPELVSXXXXXXXXXXXXDVYENE----PEVPEQ----MLGLNNVVLLPHVGS 282
RG+ +DE +++ DV+E E + P+Q +L N + PH+GS
Sbjct: 238 RGSVVDEAAVLAALERGQLGGYAADVFEXEDWARADRPQQIDPALLAHPNTLFTPHIGS 296
>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form
Length = 347
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 6/158 (3%)
Query: 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCPI----SYHSRSEKSDANYKYYTNIIDLASN 195
++ G+++GI+GLGR+G A+A R +AFG + Y S + + + + DL +
Sbjct: 164 ARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFH 223
Query: 196 CQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXXXXXX 255
+ + C L E HH++N + + L+N RG +DE L
Sbjct: 224 SDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAAL 283
Query: 256 DVYENEPEVPEQ--MLGLNNVVLLPHVGSDTEETSKAM 291
DV+E+EP Q + N++ PH +E+ S M
Sbjct: 284 DVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEM 321
>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase
Length = 333
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 91/226 (40%), Gaps = 15/226 (6%)
Query: 90 AVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGI 149
+R++N P R + + +++G ++ +G + ++VG+
Sbjct: 91 GIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGV 150
Query: 150 VGLGRIGTAIAKRVEAFGCP-ISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEE 208
+G G IG K + FG I+Y K D Y ++ DL ++ + E+
Sbjct: 151 MGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQ 210
Query: 209 THHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXXXXXXDVYENEPE----- 263
HI+N + + P I+IN R ID ++S D YE E E
Sbjct: 211 NTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNL 270
Query: 264 ---------VPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLV 300
+ +++LG+ NVVL PH+ TE M +++LV
Sbjct: 271 AKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLV 316
>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In
Transcription Corepression And Golgi Membrane Fission
Length = 358
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 6/159 (3%)
Query: 139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPI----SYHSRSEKSDANYKYYTNIIDLAS 194
++ G+++GI+GLGR+G A+A R +AFG + Y S + + + + DL
Sbjct: 166 AARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGIERALGLQRVSTLQDLLF 225
Query: 195 NCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXXXXX 254
+ + + C L E HH++N + + L+N RG +DE L
Sbjct: 226 HSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAA 285
Query: 255 XDVYENEPEVPEQ--MLGLNNVVLLPHVGSDTEETSKAM 291
DV+E+EP Q + N++ PH +E+ S M
Sbjct: 286 LDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEM 324
>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK
PEPTIDE
pdb|2HU2|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND RRTGAPPAL
Peptide
Length = 358
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 6/159 (3%)
Query: 139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPI----SYHSRSEKSDANYKYYTNIIDLAS 194
++ G+++GI+GLGR+G A+A R +AFG + Y S + + + + DL
Sbjct: 166 AARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGIERALGLQRVSTLQDLLF 225
Query: 195 NCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXXXXX 254
+ + + C L E HH++N + + L+N RG +DE L
Sbjct: 226 HSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAA 285
Query: 255 XDVYENEPEVPEQ--MLGLNNVVLLPHVGSDTEETSKAM 291
DV+E+EP Q + N++ PH +E+ S M
Sbjct: 286 LDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEM 324
>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|B Chain B, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|C Chain C, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|D Chain D, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|E Chain E, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|F Chain F, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|G Chain G, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|H Chain H, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
Length = 336
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 8/162 (4%)
Query: 139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS-----EKSDANYKYYTNIIDLA 193
++ G+++G++G GR G A+A R +AFG + ++ E+S + YT + DL
Sbjct: 147 AARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGIERSLGVQRVYT-LQDLL 205
Query: 194 SNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXXXX 253
+ + C+L E HH++N I + L+N RG +DE L
Sbjct: 206 YQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGA 265
Query: 254 XXDVYENEPEVPEQ--MLGLNNVVLLPHVGSDTEETSKAMAD 293
DV+E+EP Q + N++ PH +E+ S M +
Sbjct: 266 ALDVHESEPFSFAQGPLKDAPNLICTPHTAWYSEQASLEMRE 307
>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer
Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain
From Brucella Melitensis
Length = 416
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 92/239 (38%), Gaps = 9/239 (3%)
Query: 71 VASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGK 130
V +SVG + V N P RR+ +G
Sbjct: 84 VGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGG 143
Query: 131 WKNGHFELGSK-FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-ANYKYYTN 188
W+ +GS+ GK++GIVG G IG+ + E+ G + Y+ S+K N K +
Sbjct: 144 WEK--TAIGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQYGNVKPAAS 201
Query: 189 IIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXX 248
+ +L ++ + ++ T ++ + + LIN RG+ +D L
Sbjct: 202 LDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEG 261
Query: 249 XXXXXXXDVYENEP-----EVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAH 302
DV+ EP + GL NV+L PH+G TEE + + V LV +
Sbjct: 262 HLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQERIGTEVTRKLVEY 320
>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
pdb|3NAQ|B Chain B, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
Length = 357
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 82/170 (48%), Gaps = 8/170 (4%)
Query: 122 FDEFVKSGKWK-NGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE--- 177
+++ VK G+W G GK++G VG GRIG + +R++ FGC + YH R +
Sbjct: 148 YNQVVK-GEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAP 206
Query: 178 --KSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAH 235
+ + K+ ++ ++ C ++++ LTE+T + N+++I L +++N RGA
Sbjct: 207 ELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAI 266
Query: 236 IDEPELVSXXXXXXXXXXXXDVYENEPEVPEQMLG-LNNVVLLPHVGSDT 284
++ +V DV++ +P + + N + PH T
Sbjct: 267 MERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTT 316
>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|B Chain B, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|C Chain C, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|D Chain D, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|E Chain E, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|F Chain F, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|G Chain G, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|H Chain H, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|I Chain I, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|J Chain J, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|K Chain K, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|L Chain L, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3JTM|A Chain A, Structure Of Recombinant Formate Dehydrogenase From
Arabidopsis Thaliana
Length = 351
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 82/170 (48%), Gaps = 8/170 (4%)
Query: 122 FDEFVKSGKWK-NGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE--- 177
+++ VK G+W G GK++G VG GRIG + +R++ FGC + YH R +
Sbjct: 142 YNQVVK-GEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAP 200
Query: 178 --KSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAH 235
+ + K+ ++ ++ C ++++ LTE+T + N+++I L +++N RGA
Sbjct: 201 ELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAI 260
Query: 236 IDEPELVSXXXXXXXXXXXXDVYENEPEVPEQMLG-LNNVVLLPHVGSDT 284
++ +V DV++ +P + + N + PH T
Sbjct: 261 MERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTT 310
>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H)
Binding And Dimerization
Length = 358
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 6/159 (3%)
Query: 139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPI----SYHSRSEKSDANYKYYTNIIDLAS 194
++ G+++GI+GL R+G A+A R +AFG + Y S + + + + DL
Sbjct: 166 AARIRGETLGIIGLERVGQAVALRAKAFGFNVLFYDPYLSDGIERALGLQRVSTLQDLLF 225
Query: 195 NCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXXXXX 254
+ + + C L E HH++N + + L+N RG +DE L
Sbjct: 226 HSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAA 285
Query: 255 XDVYENEPEVPEQ--MLGLNNVVLLPHVGSDTEETSKAM 291
DV+E+EP Q + N++ PH +E+ S M
Sbjct: 286 LDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEM 324
>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a.
pdb|2W2L|A Chain A, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|B Chain B, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|C Chain C, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/309 (22%), Positives = 124/309 (40%), Gaps = 18/309 (5%)
Query: 20 LAARFTLFKLWTQSCKNKFFQENSSAIRAVV--GDTKCGADAELIDSLPT-LEIVASYSV 76
+ A T + Q+ + K + + + I+ V G +A+LI LP+ L++ A+
Sbjct: 30 IPANLTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHLPSSLKVFAAAGA 89
Query: 77 GXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGK---WKN 133
G V N+ R + ++G +
Sbjct: 90 GFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNR 149
Query: 134 GHFELGSKF---SGKSVGIVGLGRIGTAIAKR-VEAFGCPISYH------SRSEKSDANY 183
H E+G G +G VGLG I IA++ V G + Y+ + +EK+
Sbjct: 150 VHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKA-LGA 208
Query: 184 KYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVS 243
+ ++ +LA + V+ + THH+++ A+ P ++N RG I + L++
Sbjct: 209 ERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIA 268
Query: 244 XXXXXXXXXXXXDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAH- 302
DV+E EP+V ++++ + +V L H+G ET L + N+
Sbjct: 269 ALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVAIETFHEFERLTMTNIDRFL 328
Query: 303 FSNKPLLTP 311
KPLLTP
Sbjct: 329 LQGKPLLTP 337
>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
pdb|2P9G|B Chain B, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
Length = 410
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/306 (20%), Positives = 115/306 (37%), Gaps = 13/306 (4%)
Query: 16 LEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYS 75
LE AA +T + + ++ +E+ + ++ ++I++ L + +++
Sbjct: 24 LESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFA 83
Query: 76 VGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN-- 133
+G + V N P R V E + G W
Sbjct: 84 IGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLA 143
Query: 134 -GHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-ANYKYYTNIID 191
G FE GK +GI+G G IGT + E+ G + ++ K N ++ D
Sbjct: 144 AGSFEA----RGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSD 199
Query: 192 LASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXX 251
L + ++ + T +++ K I + P +LIN RG +D P L
Sbjct: 200 LLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLA 259
Query: 252 XXXXDVYENEPEVPEQ-----MLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNK 306
DV+ EP + +NV+L PH+G T+E + + V L+ + N
Sbjct: 260 GAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNG 319
Query: 307 PLLTPV 312
L+ V
Sbjct: 320 STLSAV 325
>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9C|B Chain B, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|A Chain A, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|B Chain B, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|C Chain C, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|D Chain D, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2PA3|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
Length = 410
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/306 (20%), Positives = 115/306 (37%), Gaps = 13/306 (4%)
Query: 16 LEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYS 75
LE AA +T + + ++ +E+ + ++ ++I++ L + +++
Sbjct: 24 LESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFA 83
Query: 76 VGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN-- 133
+G + V N P R V E + G W
Sbjct: 84 IGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLA 143
Query: 134 -GHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-ANYKYYTNIID 191
G FE GK +GI+G G IGT + E+ G + ++ K N ++ D
Sbjct: 144 AGSFEA----RGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSD 199
Query: 192 LASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXX 251
L + ++ + T +++ K I + P +LIN RG +D P L
Sbjct: 200 LLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLA 259
Query: 252 XXXXDVYENEPEVPEQ-----MLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNK 306
DV+ EP + +NV+L PH+G T+E + + V L+ + N
Sbjct: 260 GAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNG 319
Query: 307 PLLTPV 312
L+ V
Sbjct: 320 STLSAV 325
>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 86/188 (45%), Gaps = 12/188 (6%)
Query: 135 HFELGSKF---SGKSVGIVGLGRIGTAIAKR-VEAFGCPISYH------SRSEKSDANYK 184
H E+G G +G VGLG I IA++ V G + Y+ + +EK+ +
Sbjct: 151 HLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKA-LGAE 209
Query: 185 YYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSX 244
++ +LA + V+ + THH+++ A+ P ++N RG I + L++
Sbjct: 210 RVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAA 269
Query: 245 XXXXXXXXXXXDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAH-F 303
DV+E EP+V ++++ + +V L H+G ET L + N+
Sbjct: 270 LKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVAIETFHEFERLTMTNIDRFLL 329
Query: 304 SNKPLLTP 311
KPLLTP
Sbjct: 330 QGKPLLTP 337
>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid
Dehydrogenase Family Protein From Aeromonas Salmonicida
Subsp. Salmonicida A449
Length = 324
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 85/196 (43%), Gaps = 9/196 (4%)
Query: 117 RRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS 176
R++ + E K W++ ++ G+++ I+G G IG IA + FG + SRS
Sbjct: 116 RQLPLYREQQKQRLWQSHPYQ---GLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRS 172
Query: 177 EKSDANYKYYTNIIDL---ASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRG 233
+ A + + L + +++ T ETHH+ + P IL N+GRG
Sbjct: 173 GRERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRG 232
Query: 234 AHIDEPELVSXXXXXXXXXXXXDVYENEP-EVPEQMLGLNNVVLLPHVGSDTEETSKAMA 292
I+E +L++ DV+E EP + G N+++ PH + +A
Sbjct: 233 NAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPH--NSAYSFPDDVA 290
Query: 293 DLVIENLVAHFSNKPL 308
+ + N + +PL
Sbjct: 291 QIFVRNYIRFIDGQPL 306
>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a
Length = 348
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/309 (22%), Positives = 123/309 (39%), Gaps = 18/309 (5%)
Query: 20 LAARFTLFKLWTQSCKNKFFQENSSAIRAVV--GDTKCGADAELIDSLPT-LEIVASYSV 76
+ A T + Q+ + K + + + I+ V G +A+LI LP+ L++ A+
Sbjct: 30 IPANLTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHLPSSLKVFAAAGA 89
Query: 77 GXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGK---WKN 133
G V N+ R + ++G +
Sbjct: 90 GFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNR 149
Query: 134 GHFELGSKF---SGKSVGIVGLGRIGTAIAKR-VEAFGCPISYH------SRSEKSDANY 183
H E+G G +G VGLG I IA++ V G + Y+ + +EK+
Sbjct: 150 VHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKA-LGA 208
Query: 184 KYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVS 243
+ ++ +LA + V+ + THH+++ A+ P ++N RG I + L++
Sbjct: 209 ERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIA 268
Query: 244 XXXXXXXXXXXXDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAH- 302
DV+E EP V ++++ + +V L H+G ET L + N+
Sbjct: 269 ALKSGKLLSAGLDVHEFEPNVSKELIEMKHVTLTTHIGGVAIETFHEFERLTMTNIDRFL 328
Query: 303 FSNKPLLTP 311
KPLLTP
Sbjct: 329 LQGKPLLTP 337
>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
pdb|1PSD|B Chain B, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
Length = 409
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/306 (20%), Positives = 113/306 (36%), Gaps = 13/306 (4%)
Query: 16 LEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYS 75
LE AA +T + + ++ +E+ + ++ ++I++ L + +
Sbjct: 23 LESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGCFC 82
Query: 76 VGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN-- 133
+G + V N P R V E + G W
Sbjct: 83 IGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLA 142
Query: 134 -GHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-ANYKYYTNIID 191
G FE GK +GI+G G IGT + E+ G + ++ K N ++ D
Sbjct: 143 AGSFEA----RGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSD 198
Query: 192 LASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXX 251
L + ++ + T +++ K I + P +LIN RG +D P L
Sbjct: 199 LLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLA 258
Query: 252 XXXXDVYENEPEVPEQ-----MLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNK 306
DV+ EP + +NV+L PH+G T+E + + V L+ + N
Sbjct: 259 GAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNG 318
Query: 307 PLLTPV 312
L+ V
Sbjct: 319 STLSAV 324
>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|B Chain B, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|C Chain C, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|D Chain D, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3PP8|A Chain A, 2.1 Angstrom Crystal Structure Of Putative Oxidoreductase
(Ycdw) From Salmonella Typhimurium
Length = 315
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 7/172 (4%)
Query: 117 RRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS 176
RR ++ WK +FS VGI G G +G +A+ ++A+G P+ SRS
Sbjct: 115 RRFDDYQALKNQALWKPLPEYTREEFS---VGIXGAGVLGAKVAESLQAWGFPLRCWSRS 171
Query: 177 EKSDANYKYYTNIIDLAS---NCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRG 233
KS + Y +L + ++LI T +T I+N +++D L ++N+ RG
Sbjct: 172 RKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARG 231
Query: 234 AHIDEPELVSXXXXXXXXXXXXDVYENEPEVPEQMLGLN-NVVLLPHVGSDT 284
H+ E +L++ DV+ EP E L + V PH+ + T
Sbjct: 232 VHVQEADLLAALDSGKLKGAXLDVFSQEPLPQESPLWRHPRVAXTPHIAAVT 283
>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii
Length = 313
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/261 (20%), Positives = 110/261 (42%), Gaps = 15/261 (5%)
Query: 49 VVGDTKCGADAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXX 108
+V ++ ++I+ L+I+A +G ++V P
Sbjct: 50 IVVRSRTKVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELT 109
Query: 109 XXXXXXXXRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGC 168
R++ KSG +K G + +GK++GIVG GRIGT + A G
Sbjct: 110 IGLMIAAARKMYTSMALAKSGIFKKIE---GLELAGKTIGIVGFGRIGTKVGIIANAMGM 166
Query: 169 PI------SYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALG 222
+ ++EK +A ++ +L N ++ + +++++ I++ + +
Sbjct: 167 KVLAYDILDIREKAEKINAK---AVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMK 223
Query: 223 PSGILINIGRGAHIDEPELVSXXXXXXXXXXXXDVYENEPEVPE---QMLGLNNVVLLPH 279
+ I++N R ++ L+ DV+ NEP E ++L V++ H
Sbjct: 224 DNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTH 283
Query: 280 VGSDTEETSKAMADLVIENLV 300
+G+ T+E K +A++ +NL+
Sbjct: 284 IGAQTKEAQKRVAEMTTQNLL 304
>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|B Chain B, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|C Chain C, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|D Chain D, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
Length = 352
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 86/198 (43%), Gaps = 14/198 (7%)
Query: 117 RRVCEFDEFVKSGKWKNG---------HFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFG 167
RR+ ++ +K G W+ +F +G G+++GI G G+IG +A AFG
Sbjct: 124 RRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFG 183
Query: 168 CPISYHSR---SEKSDANYKYYTNIID-LASNCQILIVACSLTEETHHIVNRKVIDALGP 223
+ R E++ A+ D L +L V L +ET I+ + + P
Sbjct: 184 MNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKP 243
Query: 224 SGILINIGRGAHIDEPELVSXXXXXXXXXXXXDVYENEPEVP-EQMLGLNNVVLLPHVGS 282
+ + +N R ++E +V+ DV+E EP + +L + N + PH+G
Sbjct: 244 TALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGY 303
Query: 283 DTEETSKAMADLVIENLV 300
E+ + + +N++
Sbjct: 304 VERESYEMYFGIAFQNIL 321
>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|B Chain B, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|C Chain C, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|D Chain D, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
Length = 334
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 101/246 (41%), Gaps = 18/246 (7%)
Query: 60 ELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRV 119
EL+ P L+++ + SVG + VT+ P +R+
Sbjct: 57 ELLSKXPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLVKRL 116
Query: 120 CEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS 179
++ VK + L + + ++G++G GRIG+ +A AFG + + ++
Sbjct: 117 KRIEDRVKKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAXYGLAFGXKVLCYDVVKRE 176
Query: 180 DANYK--YYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHID 237
D K YT++ +L ++ + T+ETHH +N + I LIN RG +D
Sbjct: 177 DLKEKGCVYTSLDELLKESDVISLHVPYTKETHHXINEERISLXKDGVYLINTARGKVVD 236
Query: 238 EPELVSXXXXXXXXXXXXDVYENEP----------EVPEQMLGL------NNVVLLPHVG 281
L DV+E+E + ++ L + +NV++ PH+
Sbjct: 237 TDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVIITPHIA 296
Query: 282 SDTEET 287
T+++
Sbjct: 297 YYTDKS 302
>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|B Chain B, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|C Chain C, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|D Chain D, The Active Form Of Phosphoglycerate Dehydrogenase
Length = 410
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/306 (20%), Positives = 110/306 (35%), Gaps = 13/306 (4%)
Query: 16 LEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYS 75
LE AA +T + + ++ +E+ + ++ ++I++ L + +
Sbjct: 24 LESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGCFC 83
Query: 76 VGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN-- 133
+G + V N P R V E + G W
Sbjct: 84 IGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLA 143
Query: 134 -GHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-ANYKYYTNIID 191
G FE GK +GI+G G IGT + E+ G + ++ K N ++ D
Sbjct: 144 AGSFEA----RGKKLGIIGYGHIGTQLGILAESLGXYVYFYDIENKLPLGNATQVQHLSD 199
Query: 192 LASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXX 251
L + ++ + T + K I P +LIN RG +D P L
Sbjct: 200 LLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPALCDALASKHLA 259
Query: 252 XXXXDVYENEPEVPEQ-----MLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNK 306
DV+ EP + +NV+L PH+G T+E + + V L+ + N
Sbjct: 260 GAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNG 319
Query: 307 PLLTPV 312
L+ V
Sbjct: 320 STLSAV 325
>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|B Chain B, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|C Chain C, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|D Chain D, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
Length = 404
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/306 (20%), Positives = 112/306 (36%), Gaps = 13/306 (4%)
Query: 16 LEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYS 75
LE AA +T + + ++ +E+ + ++ ++I++ L + +++
Sbjct: 18 LESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFA 77
Query: 76 VGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSG---KWK 132
+G + V N P R V E + G K
Sbjct: 78 IGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLA 137
Query: 133 NGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-ANYKYYTNIID 191
G FE GK +GI+G G IGT + E+ G + ++ K N ++ D
Sbjct: 138 AGSFEA----RGKKLGIIGYGHIGTQLGILAESLGXYVYFYDIENKLPLGNATQVQHLSD 193
Query: 192 LASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXX 251
L + ++ + T + K I P +LIN RG +D P L
Sbjct: 194 LLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPALADALASKHLA 253
Query: 252 XXXXDVYENEPEVPEQ-----MLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNK 306
DV+ EP + +NV+L PH+G T+E + + V L+ + N
Sbjct: 254 GAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNG 313
Query: 307 PLLTPV 312
L+ V
Sbjct: 314 STLSAV 319
>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas
Sp.101
Length = 401
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 72/194 (37%), Gaps = 11/194 (5%)
Query: 124 EFVKSGKWKNGH-FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSR-----SE 177
E+ + G W VG V GRIG A+ +R+ F + Y R S
Sbjct: 171 EWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESV 230
Query: 178 KSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHID 237
+ + N ++ D+ C ++ + C L ET H++N + + ++N RG D
Sbjct: 231 EKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCD 290
Query: 238 EPELVSXXXXXXXXXXXXDVYENEP---EVPEQMLGLNNVVLLPHVGSDTEETSKAMADL 294
+ DV+ +P + P + + N + PH+ T A
Sbjct: 291 RDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNG--MTPHISGTTLTAQARYAAG 348
Query: 295 VIENLVAHFSNKPL 308
E L F +P+
Sbjct: 349 TREILECFFEGRPI 362
>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|B Chain B, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|C Chain C, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|D Chain D, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
Length = 401
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 72/194 (37%), Gaps = 11/194 (5%)
Query: 124 EFVKSGKWKNGH-FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSR-----SE 177
E+ + G W VG V GRIG A+ +R+ F + Y R S
Sbjct: 171 EWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESV 230
Query: 178 KSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHID 237
+ + N ++ D+ C ++ + C L ET H++N + + ++N RG D
Sbjct: 231 EKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCD 290
Query: 238 EPELVSXXXXXXXXXXXXDVYENEP---EVPEQMLGLNNVVLLPHVGSDTEETSKAMADL 294
+ DV+ +P + P + + N + PH+ T A
Sbjct: 291 RDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNG--MTPHISGTTLTAQARYAAG 348
Query: 295 VIENLVAHFSNKPL 308
E L F +P+
Sbjct: 349 TREILEXFFEGRPI 362
>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAC|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
Length = 393
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 72/194 (37%), Gaps = 11/194 (5%)
Query: 124 EFVKSGKWKNGH-FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSR-----SE 177
E+ + G W VG V GRIG A+ +R+ F + Y R S
Sbjct: 170 EWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESV 229
Query: 178 KSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHID 237
+ + N ++ D+ C ++ + C L ET H++N + + ++N RG D
Sbjct: 230 EKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCD 289
Query: 238 EPELVSXXXXXXXXXXXXDVYENEP---EVPEQMLGLNNVVLLPHVGSDTEETSKAMADL 294
+ DV+ +P + P + + N + PH+ T A
Sbjct: 290 RDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNG--MTPHISGTTLTAQARYAAG 347
Query: 295 VIENLVAHFSNKPL 308
E L F +P+
Sbjct: 348 TREILECFFEGRPI 361
>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium
Moraxella Sp.c2 In Complex With Nad And Azide
Length = 402
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 76/199 (38%), Gaps = 17/199 (8%)
Query: 125 FVKSGKW-KNGHFELGS------KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE 177
++ S W +NG + + G VG V GRIG + + + F + Y R
Sbjct: 166 YIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHYTDRHR 225
Query: 178 KSDA-----NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGR 232
+A N ++ D+ C ++ + C L ET H++N + + L+N R
Sbjct: 226 LPEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTAR 285
Query: 233 GAHIDEPELVSXXXXXXXXXXXXDVYENEP---EVPEQMLGLNNVVLLPHVGSDTEETSK 289
G D +V DV+ +P + P + + N + PH+ +
Sbjct: 286 GKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNG--MTPHISGTSLSAQT 343
Query: 290 AMADLVIENLVAHFSNKPL 308
A E L +F +P+
Sbjct: 344 RYAAGTREILECYFEGRPI 362
>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From
Bacterium Moraxella Sp.c-1 In Closed Conformation
Length = 401
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 76/199 (38%), Gaps = 17/199 (8%)
Query: 125 FVKSGKW-KNGHFELGS------KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE 177
++ S W +NG + + G VG V GRIG + + + F + Y R
Sbjct: 165 YIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHYTDRHR 224
Query: 178 KSDA-----NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGR 232
+A N ++ D+ C ++ + C L ET H++N + + L+N R
Sbjct: 225 LPEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTAR 284
Query: 233 GAHIDEPELVSXXXXXXXXXXXXDVYENEP---EVPEQMLGLNNVVLLPHVGSDTEETSK 289
G D +V DV+ +P + P + + N + PH+ +
Sbjct: 285 GKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNG--MTPHISGTSLSAQT 342
Query: 290 AMADLVIENLVAHFSNKPL 308
A E L +F +P+
Sbjct: 343 RYAAGTREILECYFEGRPI 361
>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|B Chain B, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|C Chain C, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|D Chain D, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|E Chain E, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|F Chain F, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|G Chain G, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|H Chain H, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
Length = 381
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 14/140 (10%)
Query: 139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFG-----CPISYHSRSEKSDANYKYYTNIIDLA 193
G +++GIVG+G +G+ + R+EA G C +R ++ D + + +L
Sbjct: 114 GFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARGDEGD-----FRTLDELV 168
Query: 194 SNCQILIVACSLTEE----THHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXX 249
+L L ++ T H+ + +I L P ILIN RG +D L++
Sbjct: 169 QEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQ 228
Query: 250 XXXXXXDVYENEPEVPEQML 269
DV+E EP++ +L
Sbjct: 229 PLSVVLDVWEGEPDLNVALL 248
>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
pdb|3GVX|B Chain B, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
Length = 290
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 8/189 (4%)
Query: 117 RRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS 176
+ + E +E K+G ++ L GK++GI+G G IG +A +AFG + ++RS
Sbjct: 98 KNILENNELXKAGIFRQSPTTL---LYGKALGILGYGGIGRRVAHLAKAFGXRVIAYTRS 154
Query: 177 EKSDANYKYYT-NIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAH 235
D N + + DL +++A LT++T VN +++ + ++N+ R
Sbjct: 155 -SVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGXVNSRLLANARKNLTIVNVARADV 213
Query: 236 IDEPELVSXXXXXXXXXXXXDVYENEPEVPEQMLGLNNVVLLPHV-GSDTEETSKAMADL 294
+ +P+ + DV+ NEPE+ E L N +L PHV G + E L
Sbjct: 214 VSKPDXIGFLKERSDVWYLSDVWWNEPEITET--NLRNAILSPHVAGGXSGEIXDIAIQL 271
Query: 295 VIENLVAHF 303
EN+ F
Sbjct: 272 AFENVRNFF 280
>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From
Acidaminococcus Fermentans
Length = 331
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 16/185 (8%)
Query: 131 WKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE-KSDANYKYYTNI 189
+K F + +VG+VGLGRIG A+ G + E K +Y ++
Sbjct: 133 FKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKGIEDYCTQVSL 192
Query: 190 IDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXX 249
++ I+ + +E +V R + + IL+N RG +D ++
Sbjct: 193 DEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGK 252
Query: 250 XXXXXXDVYENEPEV------------P--EQMLGLNNVVLL-PHVGSDTEETSKAMADL 294
DV + E V P E+++ L VL+ PH+GS T+E K M ++
Sbjct: 253 LGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMVEV 312
Query: 295 VIENL 299
+NL
Sbjct: 313 SYQNL 317
>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
pdb|1QP8|B Chain B, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
Length = 303
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 80/191 (41%), Gaps = 9/191 (4%)
Query: 117 RRVCEFDEFVKSGKW-KNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSR 175
+R+ ++ E K G + ++ L G+ V ++GLG IGT + K + A G + SR
Sbjct: 99 KRIIQYGEKXKRGDYGRDVEIPL---IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSR 155
Query: 176 SEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAH 235
+ K + +++ ++ + + + A L + T +V + + + +N+GR
Sbjct: 156 TPK-EGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALXAEDAVFVNVGRAEV 214
Query: 236 IDEPELVSXXXXXXXXXXXXDVY--ENEPEVPEQMLGLNNVVLLPHV--GSDTEETSKAM 291
+D ++ DV+ N+ + L NVV P V G E +
Sbjct: 215 LDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQX 274
Query: 292 ADLVIENLVAH 302
+ NL+ +
Sbjct: 275 VXEAVRNLITY 285
>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Lactobacillus Plantarum
Length = 324
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 4/145 (2%)
Query: 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRSEKSDANYK--YYTNIIDLASNC 196
S +G+ + I G G+IG ++A + A G I ++ +D ++ +T D +
Sbjct: 133 STLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHETVAFTATADALATA 192
Query: 197 QILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXXXXXXD 256
++ A LT THH+ + ++ +LINIGRG +D L++ D
Sbjct: 193 NFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALD 252
Query: 257 VYENEPEVPEQMLGL-NNVVLLPHV 280
V E EP + L ++V++ PH+
Sbjct: 253 VTEPEPLPTDHPLWQRDDVLITPHI 277
>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J49|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 75/191 (39%), Gaps = 16/191 (8%)
Query: 138 LGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHS--RSEKSDANYKYYTNIIDLASN 195
+G + + VG+VG G IG + +E FG + + R+ + + Y ++ DL
Sbjct: 140 IGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQ 199
Query: 196 CQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXXXXXX 255
++ + H++N + I + +++N+ RG +D ++
Sbjct: 200 ADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAM 259
Query: 256 DVYENE----------PEVPE----QMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVA 301
DVYE E E P+ ++ NV++ PH T + M +N +
Sbjct: 260 DVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPHTAFYTTHAVRNMVVKAFDNNLE 319
Query: 302 HFSNKPLLTPV 312
K TPV
Sbjct: 320 LVEGKEAETPV 330
>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ5|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
Length = 343
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 15/168 (8%)
Query: 146 SVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRSEKSDANYKYYTNIIDLASNCQILIVACS 204
+VG++G+G IG+A+A+ A G I+Y + YT+ + I+ +
Sbjct: 150 TVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTVLKEADIVSLHTP 209
Query: 205 LTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXXXXXXDVYENE--- 261
L T +++ K + + S LIN RG +D L+ D E
Sbjct: 210 LFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGESSY 269
Query: 262 --------PEVPEQ---MLGLNNVVLLPHVGSDTEETSKAMADLVIEN 298
E+PE + + NVV+ PH TE + + M + + +
Sbjct: 270 FGHTGLTDSEIPEDYKTLAKMPNVVITPHSAFYTETSIRNMVQICLTD 317
>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|C Chain C, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|D Chain D, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 74/191 (38%), Gaps = 16/191 (8%)
Query: 138 LGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHS--RSEKSDANYKYYTNIIDLASN 195
+G + + VG+VG G IG + +E FG + + R+ + + Y ++ DL
Sbjct: 140 IGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQ 199
Query: 196 CQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXXXXXX 255
++ + H++N + I + +++N+ RG +D ++
Sbjct: 200 ADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAM 259
Query: 256 DVYENE----------PEVPE----QMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVA 301
DVYE E E P+ ++ NV++ P T + M +N +
Sbjct: 260 DVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNLE 319
Query: 302 HFSNKPLLTPV 312
K TPV
Sbjct: 320 LVEGKEAETPV 330
>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
pdb|2DLD|B Chain B, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
Length = 337
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 66/170 (38%), Gaps = 16/170 (9%)
Query: 138 LGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANYK--YYTNIIDLASN 195
+G + + VG+VG G IG + +E FG + + + + K Y ++ DL
Sbjct: 140 IGREVRDQVVGVVGTGHIGQVFMRIMEGFGAKVIAYDIFKNPELEKKGYYVDSLDDLYKQ 199
Query: 196 CQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXXXXXX 255
++ + H++N K I + +++N RG +D ++
Sbjct: 200 ADVISLHVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLDSGKIFGFVM 259
Query: 256 DVYENE----------PEVPEQMLG----LNNVVLLPHVGSDTEETSKAM 291
D YE+E E P++ L NV++ PH T + M
Sbjct: 260 DTYEDEVGVFNKDWEGKEFPDKRLADLIDRPNVLVTPHTAFYTTHAVRNM 309
>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
Length = 365
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 142 FSGKSVGIVGLGRIGTAIAKRVEAFGCP--ISYHSRSEKSDANYKY----YTNIIDLASN 195
GK++ +G GRIG + +R+ F + Y ++ DA K NI +L +
Sbjct: 163 IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQ 222
Query: 196 CQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGA 234
I+ V L T ++N++++ L+N RGA
Sbjct: 223 ADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGA 261
>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
Length = 364
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 144 GKSVGIVGLGRIGTAIAKRVEAFGCP--ISYHSRSEKSDANYKY----YTNIIDLASNCQ 197
GK++ +G GRIG + +R+ F + Y ++ DA K NI +L +
Sbjct: 164 GKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQAD 223
Query: 198 ILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGA 234
I+ V L T ++N++++ L+N RGA
Sbjct: 224 IVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGA 260
>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
pdb|2O4C|B Chain B, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
Length = 380
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 209 THHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXXXXXXDVYENEPEV-PEQ 267
T H+++ + AL P L+N RGA +D L DV+E EP+ PE
Sbjct: 185 TRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQADPE- 243
Query: 268 MLGLNNVVLLPHV 280
L ++ PH+
Sbjct: 244 -LAARCLIATPHI 255
>pdb|3D4O|A Chain A, Crystal Structure Of Dipicolinate Synthase Subunit A
(Np_243269.1) From Bacillus Halodurans At 2.10 A
Resolution
pdb|3D4O|B Chain B, Crystal Structure Of Dipicolinate Synthase Subunit A
(Np_243269.1) From Bacillus Halodurans At 2.10 A
Resolution
pdb|3D4O|C Chain C, Crystal Structure Of Dipicolinate Synthase Subunit A
(Np_243269.1) From Bacillus Halodurans At 2.10 A
Resolution
pdb|3D4O|D Chain D, Crystal Structure Of Dipicolinate Synthase Subunit A
(Np_243269.1) From Bacillus Halodurans At 2.10 A
Resolution
Length = 293
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSR 175
G +V ++GLGR+G ++A++ A G + +R
Sbjct: 155 GANVAVLGLGRVGXSVARKFAALGAKVKVGAR 186
>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|B Chain B, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|C Chain C, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|D Chain D, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
Length = 365
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/161 (19%), Positives = 59/161 (36%), Gaps = 7/161 (4%)
Query: 143 SGKSVGIVGLGRIGTAIAKRVEAFGCPIS----YHSRSEKSDANYKYYTNIIDLASNCQI 198
+G +GIVG G +G A+ + + F I + RS + N ++ D+ +
Sbjct: 175 AGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPRSXLEE-NGVEPASLEDVLTKSDF 233
Query: 199 LIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXXXXXXDVY 258
+ V ++T E + + + I + R +D L + DVY
Sbjct: 234 IFVVAAVTSENKRFLGAEAFSSXRRGAAFILLSRADVVDFDALXA-AVSSGHIVAASDVY 292
Query: 259 ENEP-EVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIEN 298
EP + + L + H + K D V+E+
Sbjct: 293 PEEPLPLDHPVRSLKGFIRSAHRAGALDSAFKKXGDXVLED 333
>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
Length = 287
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS-EKSD 180
+ G +GLG +G+A+AK + GC ++ +RS EK++
Sbjct: 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAE 38
>pdb|2YFQ|A Chain A, Crystal Structure Of Glutamate Dehydrogenase From
Peptoniphilus Asaccharolyticus
pdb|2YFQ|B Chain B, Crystal Structure Of Glutamate Dehydrogenase From
Peptoniphilus Asaccharolyticus
Length = 421
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 138 LGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYT-NIIDL 192
G K + + G G +GT K +E G + + ++++ NY Y N ID
Sbjct: 206 FGIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDF 261
>pdb|3TWO|A Chain A, The Crystal Structure Of Cad From Helicobacter Pylori
Complexed With Nadp(H)
pdb|3TWO|B Chain B, The Crystal Structure Of Cad From Helicobacter Pylori
Complexed With Nadp(H)
Length = 348
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 141 KFS----GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE--KSDA 181
KFS G VG+ G G +G+ K A G +S +R+E K DA
Sbjct: 170 KFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDA 216
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,050,307
Number of Sequences: 62578
Number of extensions: 287971
Number of successful extensions: 819
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 681
Number of HSP's gapped (non-prelim): 68
length of query: 313
length of database: 14,973,337
effective HSP length: 99
effective length of query: 214
effective length of database: 8,778,115
effective search space: 1878516610
effective search space used: 1878516610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)