Query 021361
Match_columns 313
No_of_seqs 188 out of 1652
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 02:22:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021361.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021361hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15409 bifunctional glyoxyla 100.0 4.6E-73 9.9E-78 528.8 35.8 309 3-313 2-319 (323)
2 COG0111 SerA Phosphoglycerate 100.0 3.2E-73 6.8E-78 528.2 33.7 308 1-310 1-313 (324)
3 COG1052 LdhA Lactate dehydroge 100.0 2.2E-71 4.9E-76 515.4 34.3 309 3-313 2-322 (324)
4 PRK13243 glyoxylate reductase; 100.0 1.3E-70 2.8E-75 515.1 35.8 310 3-313 2-322 (333)
5 PRK08410 2-hydroxyacid dehydro 100.0 1.5E-70 3.3E-75 510.2 34.8 299 5-307 2-311 (311)
6 PRK11790 D-3-phosphoglycerate 100.0 5.3E-70 1.1E-74 523.1 36.7 312 1-313 8-326 (409)
7 PRK06487 glycerate dehydrogena 100.0 1.2E-69 2.5E-74 505.5 35.3 304 5-313 2-317 (317)
8 PLN02306 hydroxypyruvate reduc 100.0 5.4E-69 1.2E-73 510.6 35.8 311 3-313 15-354 (386)
9 PRK06932 glycerate dehydrogena 100.0 1.2E-68 2.6E-73 497.8 32.8 270 36-307 35-314 (314)
10 PLN02928 oxidoreductase family 100.0 1.4E-67 3.1E-72 496.6 35.9 305 1-311 16-343 (347)
11 PRK07574 formate dehydrogenase 100.0 3.3E-67 7.2E-72 497.4 33.4 294 18-311 62-365 (385)
12 TIGR01327 PGDH D-3-phosphoglyc 100.0 3.9E-67 8.5E-72 518.2 35.0 306 5-313 1-311 (525)
13 PLN03139 formate dehydrogenase 100.0 1.1E-66 2.4E-71 493.5 34.1 293 17-309 68-370 (386)
14 PRK13581 D-3-phosphoglycerate 100.0 1.3E-66 2.7E-71 514.7 35.1 306 4-313 1-312 (526)
15 PRK12480 D-lactate dehydrogena 100.0 3.6E-65 7.9E-70 477.3 32.3 277 37-313 37-330 (330)
16 PRK08605 D-lactate dehydrogena 100.0 9.5E-65 2.1E-69 475.5 32.7 312 1-313 1-332 (332)
17 KOG0068 D-3-phosphoglycerate d 100.0 4.4E-65 9.6E-70 458.7 26.4 299 4-305 7-313 (406)
18 PRK15469 ghrA bifunctional gly 100.0 2.1E-61 4.5E-66 448.4 32.5 292 5-313 2-307 (312)
19 PRK06436 glycerate dehydrogena 100.0 1.1E-60 2.5E-65 441.3 33.1 286 5-313 2-289 (303)
20 PRK15438 erythronate-4-phospha 100.0 2.4E-60 5.2E-65 448.7 32.2 277 4-307 1-281 (378)
21 KOG0069 Glyoxylate/hydroxypyru 100.0 2.4E-60 5.2E-65 437.2 27.1 267 47-313 63-335 (336)
22 PRK00257 erythronate-4-phospha 100.0 1.5E-59 3.2E-64 444.6 32.7 279 4-308 1-283 (381)
23 PF02826 2-Hacid_dh_C: D-isome 100.0 3.9E-48 8.5E-53 333.1 15.4 173 109-281 1-178 (178)
24 KOG0067 Transcription factor C 100.0 5.1E-32 1.1E-36 247.2 12.6 254 49-309 77-342 (435)
25 PF00389 2-Hacid_dh: D-isomer 99.9 5E-23 1.1E-27 168.7 14.3 101 6-108 1-101 (133)
26 PTZ00075 Adenosylhomocysteinas 99.9 2.6E-21 5.6E-26 186.5 15.2 167 73-266 197-369 (476)
27 TIGR02853 spore_dpaA dipicolin 99.8 3.6E-20 7.8E-25 170.5 10.6 176 42-251 51-257 (287)
28 PRK08306 dipicolinate synthase 99.7 2.1E-15 4.4E-20 139.7 14.4 163 41-232 51-242 (296)
29 PLN02494 adenosylhomocysteinas 99.6 2.3E-15 4.9E-20 145.2 9.3 116 141-262 251-374 (477)
30 PRK13403 ketol-acid reductoiso 99.5 3.9E-14 8.4E-19 130.6 8.7 88 140-229 12-104 (335)
31 TIGR00936 ahcY adenosylhomocys 99.5 5.4E-14 1.2E-18 134.5 9.7 115 141-260 192-312 (406)
32 COG2084 MmsB 3-hydroxyisobutyr 99.5 2.5E-13 5.4E-18 124.0 12.3 118 145-262 1-126 (286)
33 PF03446 NAD_binding_2: NAD bi 99.5 8E-14 1.7E-18 118.1 7.8 111 145-257 2-118 (163)
34 PRK05476 S-adenosyl-L-homocyst 99.4 1.2E-12 2.6E-17 126.0 9.1 152 72-243 154-312 (425)
35 TIGR01505 tartro_sem_red 2-hyd 99.3 5.1E-12 1.1E-16 116.8 10.2 106 146-251 1-113 (291)
36 PRK11559 garR tartronate semia 99.3 7.4E-12 1.6E-16 115.9 10.3 118 145-262 3-127 (296)
37 PRK15461 NADH-dependent gamma- 99.3 1.3E-11 2.8E-16 114.4 10.0 111 145-257 2-119 (296)
38 PRK12490 6-phosphogluconate de 99.3 2.3E-11 4.9E-16 113.0 11.1 108 146-256 2-117 (299)
39 PLN02350 phosphogluconate dehy 99.3 2.3E-11 5.1E-16 119.4 11.6 116 146-262 8-138 (493)
40 PF00670 AdoHcyase_NAD: S-aden 99.3 1.3E-11 2.7E-16 103.4 8.1 99 140-243 19-123 (162)
41 PRK09599 6-phosphogluconate de 99.2 8.1E-11 1.8E-15 109.3 11.0 109 146-257 2-118 (301)
42 KOG0409 Predicted dehydrogenas 99.2 1.1E-10 2.4E-15 105.6 8.4 113 142-256 33-153 (327)
43 PRK05479 ketol-acid reductoiso 99.1 1.4E-10 3E-15 108.3 8.4 91 140-233 13-109 (330)
44 PRK15059 tartronate semialdehy 99.1 3.8E-10 8.1E-15 104.5 10.3 110 146-257 2-117 (292)
45 PLN02712 arogenate dehydrogena 99.1 3E-10 6.5E-15 115.8 9.4 109 139-248 364-477 (667)
46 PTZ00142 6-phosphogluconate de 99.1 4.8E-10 1E-14 109.9 10.3 117 145-262 2-132 (470)
47 PLN02256 arogenate dehydrogena 99.1 1.7E-09 3.8E-14 100.5 13.5 105 142-247 34-143 (304)
48 PLN02858 fructose-bisphosphate 99.1 4.9E-10 1.1E-14 122.0 10.6 113 143-257 3-124 (1378)
49 cd00401 AdoHcyase S-adenosyl-L 99.0 5.9E-10 1.3E-14 107.2 8.9 99 140-243 198-302 (413)
50 TIGR00872 gnd_rel 6-phosphoglu 99.0 1.9E-09 4.2E-14 100.0 11.7 104 146-251 2-113 (298)
51 PLN02858 fructose-bisphosphate 99.0 1.9E-09 4.1E-14 117.4 12.6 112 143-256 323-443 (1378)
52 TIGR00873 gnd 6-phosphoglucona 99.0 1.9E-09 4.2E-14 105.6 11.0 116 146-262 1-129 (467)
53 TIGR01692 HIBADH 3-hydroxyisob 99.0 1.7E-09 3.6E-14 99.9 9.2 106 149-256 1-113 (288)
54 PLN02545 3-hydroxybutyryl-CoA 99.0 5.6E-09 1.2E-13 96.7 12.6 100 145-247 5-133 (295)
55 PRK09260 3-hydroxybutyryl-CoA 98.9 1.5E-08 3.3E-13 93.5 12.8 110 145-258 2-141 (288)
56 PRK08655 prephenate dehydrogen 98.9 1.3E-08 2.9E-13 99.2 12.2 127 146-280 2-137 (437)
57 PRK14619 NAD(P)H-dependent gly 98.9 6.7E-09 1.4E-13 96.8 9.6 82 143-234 3-85 (308)
58 PLN02712 arogenate dehydrogena 98.9 1.6E-08 3.5E-13 103.2 12.8 105 142-247 50-159 (667)
59 PRK15182 Vi polysaccharide bio 98.9 1.2E-08 2.5E-13 99.2 10.8 129 145-276 7-173 (425)
60 TIGR00465 ilvC ketol-acid redu 98.9 7.7E-09 1.7E-13 96.5 8.7 91 142-235 1-97 (314)
61 PRK07417 arogenate dehydrogena 98.9 1.3E-08 2.8E-13 93.6 10.1 136 146-288 2-148 (279)
62 PF07991 IlvN: Acetohydroxy ac 98.9 5.7E-09 1.2E-13 87.1 6.7 89 142-233 2-96 (165)
63 PRK14194 bifunctional 5,10-met 98.8 1.4E-08 3E-13 93.6 9.0 133 139-304 154-287 (301)
64 PF03807 F420_oxidored: NADP o 98.8 6.8E-09 1.5E-13 79.6 5.8 85 146-233 1-96 (96)
65 PRK07502 cyclohexadienyl dehyd 98.8 3E-08 6.4E-13 92.4 11.0 142 144-289 6-161 (307)
66 PRK05225 ketol-acid reductoiso 98.8 4.4E-09 9.6E-14 100.9 5.5 101 130-234 21-133 (487)
67 PRK08293 3-hydroxybutyryl-CoA 98.8 7.9E-08 1.7E-12 88.7 13.4 135 145-291 4-169 (287)
68 PLN02688 pyrroline-5-carboxyla 98.8 8.3E-08 1.8E-12 87.4 12.9 98 146-247 2-109 (266)
69 PRK07066 3-hydroxybutyryl-CoA 98.8 1E-07 2.2E-12 89.2 13.6 101 145-247 8-133 (321)
70 PRK11064 wecC UDP-N-acetyl-D-m 98.8 7E-08 1.5E-12 93.6 12.7 104 145-248 4-136 (415)
71 PRK11199 tyrA bifunctional cho 98.8 2.2E-07 4.7E-12 89.0 15.4 121 101-244 67-188 (374)
72 PRK06545 prephenate dehydrogen 98.8 6.9E-08 1.5E-12 92.0 11.7 135 145-288 1-155 (359)
73 PRK07530 3-hydroxybutyryl-CoA 98.7 1.1E-07 2.5E-12 87.8 12.4 98 145-246 5-132 (292)
74 COG0287 TyrA Prephenate dehydr 98.7 1.3E-07 2.8E-12 86.7 12.1 130 144-281 3-146 (279)
75 PRK05808 3-hydroxybutyryl-CoA 98.7 2.9E-07 6.4E-12 84.6 13.8 100 145-247 4-132 (282)
76 PRK07531 bifunctional 3-hydrox 98.7 2.1E-07 4.5E-12 92.3 13.5 101 145-247 5-130 (495)
77 PRK08818 prephenate dehydrogen 98.7 4.5E-07 9.7E-12 86.4 14.9 121 143-279 3-130 (370)
78 COG0499 SAM1 S-adenosylhomocys 98.7 5.1E-08 1.1E-12 90.3 8.0 98 141-243 206-309 (420)
79 TIGR00518 alaDH alanine dehydr 98.7 3.2E-08 6.9E-13 94.6 6.4 91 141-231 164-267 (370)
80 cd01075 NAD_bind_Leu_Phe_Val_D 98.7 2E-07 4.4E-12 81.5 10.8 105 139-251 23-134 (200)
81 cd01080 NAD_bind_m-THF_DH_Cycl 98.7 1.2E-07 2.7E-12 80.6 9.1 82 140-237 40-122 (168)
82 TIGR03026 NDP-sugDHase nucleot 98.7 4.9E-07 1.1E-11 87.7 14.5 131 146-277 2-174 (411)
83 cd01065 NAD_bind_Shikimate_DH 98.6 1.6E-07 3.4E-12 78.3 9.2 106 141-251 16-134 (155)
84 PRK14189 bifunctional 5,10-met 98.6 1.2E-07 2.6E-12 86.9 9.0 81 139-235 153-234 (285)
85 PRK14188 bifunctional 5,10-met 98.6 1.3E-07 2.8E-12 87.3 9.3 78 140-234 154-233 (296)
86 PRK12491 pyrroline-5-carboxyla 98.6 1.3E-07 2.8E-12 86.7 8.9 98 145-246 3-110 (272)
87 TIGR01724 hmd_rel H2-forming N 98.6 8.2E-07 1.8E-11 82.0 13.9 89 155-247 31-129 (341)
88 PRK06035 3-hydroxyacyl-CoA deh 98.6 4.7E-07 1E-11 83.7 12.5 100 145-247 4-135 (291)
89 COG1023 Gnd Predicted 6-phosph 98.6 1.9E-07 4.1E-12 82.2 9.1 111 145-258 1-119 (300)
90 PRK13302 putative L-aspartate 98.6 1.2E-07 2.6E-12 86.9 8.3 104 143-251 5-118 (271)
91 KOG1370 S-adenosylhomocysteine 98.6 8.4E-08 1.8E-12 87.0 6.6 90 141-235 211-305 (434)
92 PRK08268 3-hydroxy-acyl-CoA de 98.6 4.2E-07 9.1E-12 90.3 11.7 112 145-262 8-150 (507)
93 PRK06129 3-hydroxyacyl-CoA deh 98.6 7.5E-07 1.6E-11 83.1 12.6 135 145-290 3-166 (308)
94 PRK14618 NAD(P)H-dependent gly 98.6 2.6E-07 5.7E-12 86.8 9.6 97 145-247 5-123 (328)
95 PRK07679 pyrroline-5-carboxyla 98.6 2.9E-07 6.2E-12 84.6 9.6 101 143-247 2-113 (279)
96 PRK06130 3-hydroxybutyryl-CoA 98.6 4.6E-07 1E-11 84.4 11.0 101 145-247 5-129 (311)
97 PRK14179 bifunctional 5,10-met 98.6 3.2E-07 7E-12 84.0 9.4 128 139-302 153-281 (284)
98 PRK08507 prephenate dehydrogen 98.6 7.2E-07 1.6E-11 81.8 11.7 94 146-247 2-103 (275)
99 PRK07819 3-hydroxybutyryl-CoA 98.5 8.7E-07 1.9E-11 81.8 11.7 112 145-260 6-147 (286)
100 PF01488 Shikimate_DH: Shikima 98.5 2.1E-07 4.6E-12 76.3 6.1 94 141-237 9-115 (135)
101 PRK00094 gpsA NAD(P)H-dependen 98.5 3.4E-07 7.3E-12 85.6 8.0 88 146-235 3-109 (325)
102 PF01210 NAD_Gly3P_dh_N: NAD-d 98.5 2.5E-07 5.5E-12 77.8 6.3 87 146-234 1-106 (157)
103 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.5 7.1E-07 1.5E-11 88.5 9.9 114 145-263 6-149 (503)
104 PRK14175 bifunctional 5,10-met 98.5 8.3E-07 1.8E-11 81.4 9.1 80 139-234 153-233 (286)
105 PF10727 Rossmann-like: Rossma 98.4 1.1E-07 2.5E-12 77.0 3.1 102 144-249 10-120 (127)
106 PRK09287 6-phosphogluconate de 98.4 7E-07 1.5E-11 87.4 8.8 107 155-262 1-120 (459)
107 PRK06476 pyrroline-5-carboxyla 98.4 8.4E-07 1.8E-11 80.5 8.8 97 146-248 2-108 (258)
108 PRK15057 UDP-glucose 6-dehydro 98.4 1.7E-06 3.6E-11 83.3 11.1 122 146-276 2-160 (388)
109 PRK07680 late competence prote 98.4 1.1E-06 2.3E-11 80.6 9.3 97 146-246 2-109 (273)
110 PRK14806 bifunctional cyclohex 98.4 1.9E-06 4.1E-11 89.5 12.0 130 145-281 4-152 (735)
111 KOG2380 Prephenate dehydrogena 98.4 3.1E-06 6.8E-11 78.1 11.6 136 144-281 52-192 (480)
112 TIGR00561 pntA NAD(P) transhyd 98.4 4.2E-06 9.1E-11 82.6 12.6 177 45-232 64-285 (511)
113 PRK06928 pyrroline-5-carboxyla 98.4 3.1E-06 6.8E-11 77.8 10.8 99 145-247 2-112 (277)
114 COG2085 Predicted dinucleotide 98.4 1.9E-06 4.1E-11 75.1 8.5 86 145-233 2-95 (211)
115 cd05191 NAD_bind_amino_acid_DH 98.3 3.3E-06 7.1E-11 63.6 8.5 67 140-231 19-86 (86)
116 PRK05472 redox-sensing transcr 98.3 5E-07 1.1E-11 79.8 4.5 127 102-247 61-201 (213)
117 cd05212 NAD_bind_m-THF_DH_Cycl 98.3 9.2E-06 2E-10 67.0 11.2 80 139-234 23-103 (140)
118 PF02882 THF_DHG_CYH_C: Tetrah 98.3 4.5E-06 9.7E-11 70.3 9.0 81 139-235 31-112 (160)
119 PRK10792 bifunctional 5,10-met 98.3 6.3E-06 1.4E-10 75.5 10.6 80 139-234 154-234 (285)
120 cd01079 NAD_bind_m-THF_DH NAD 98.2 1.2E-05 2.5E-10 69.6 10.7 89 137-232 55-157 (197)
121 PRK14176 bifunctional 5,10-met 98.2 5.2E-06 1.1E-10 76.1 8.9 79 139-233 159-238 (287)
122 PRK14192 bifunctional 5,10-met 98.2 6.8E-06 1.5E-10 75.6 9.2 80 139-234 154-234 (283)
123 PRK14191 bifunctional 5,10-met 98.2 5.4E-06 1.2E-10 76.0 8.4 80 139-234 152-232 (285)
124 PF03721 UDPG_MGDP_dh_N: UDP-g 98.2 4.5E-06 9.7E-11 72.2 7.5 132 145-276 1-171 (185)
125 PRK14178 bifunctional 5,10-met 98.2 5.9E-06 1.3E-10 75.5 8.5 80 139-234 147-227 (279)
126 PRK12557 H(2)-dependent methyl 98.2 7.1E-06 1.5E-10 77.6 9.3 90 156-246 32-132 (342)
127 COG0059 IlvC Ketol-acid reduct 98.2 5.4E-06 1.2E-10 75.6 7.3 90 141-233 15-110 (338)
128 PF02737 3HCDH_N: 3-hydroxyacy 98.1 3.5E-06 7.6E-11 72.5 5.3 98 146-246 1-127 (180)
129 PRK14170 bifunctional 5,10-met 98.1 2.6E-05 5.6E-10 71.4 10.9 128 139-302 152-280 (284)
130 TIGR01035 hemA glutamyl-tRNA r 98.1 4.5E-06 9.7E-11 81.1 6.2 94 141-237 177-283 (417)
131 PRK07634 pyrroline-5-carboxyla 98.1 2.1E-05 4.6E-10 70.6 10.1 101 143-248 3-114 (245)
132 PRK11880 pyrroline-5-carboxyla 98.1 9.2E-06 2E-10 74.0 7.8 96 145-246 3-107 (267)
133 COG0362 Gnd 6-phosphogluconate 98.1 6.3E-05 1.4E-09 71.0 13.2 154 145-310 4-171 (473)
134 PRK14190 bifunctional 5,10-met 98.1 2E-05 4.2E-10 72.3 9.8 122 139-296 153-275 (284)
135 PF01262 AlaDh_PNT_C: Alanine 98.1 5E-06 1.1E-10 70.7 5.5 92 140-231 16-139 (168)
136 PLN00203 glutamyl-tRNA reducta 98.1 4.8E-06 1E-10 82.7 6.1 90 141-233 263-371 (519)
137 TIGR01915 npdG NADPH-dependent 98.1 9.6E-06 2.1E-10 71.9 7.4 87 146-235 2-105 (219)
138 PRK09424 pntA NAD(P) transhydr 98.1 2.2E-05 4.7E-10 77.7 10.5 178 45-232 65-286 (509)
139 PRK13304 L-aspartate dehydroge 98.1 1.2E-05 2.7E-10 73.3 8.2 101 146-251 3-115 (265)
140 cd05311 NAD_bind_2_malic_enz N 98.1 3.4E-05 7.4E-10 68.8 10.7 150 140-304 21-196 (226)
141 COG0345 ProC Pyrroline-5-carbo 98.1 1.3E-05 2.9E-10 72.8 7.9 98 145-250 2-112 (266)
142 PRK14183 bifunctional 5,10-met 98.1 2E-05 4.2E-10 72.1 9.0 80 139-234 152-232 (281)
143 PRK14171 bifunctional 5,10-met 98.0 3.3E-05 7E-10 70.9 10.1 80 139-234 154-234 (288)
144 PTZ00431 pyrroline carboxylate 98.0 2.5E-05 5.5E-10 71.1 9.4 97 144-246 3-103 (260)
145 COG0686 Ald Alanine dehydrogen 98.0 6.1E-06 1.3E-10 75.5 5.2 91 141-231 165-268 (371)
146 PRK14186 bifunctional 5,10-met 98.0 4.5E-05 9.7E-10 70.4 10.9 126 139-296 153-279 (297)
147 PRK14169 bifunctional 5,10-met 98.0 3.1E-05 6.7E-10 70.9 9.6 80 139-234 151-231 (282)
148 PRK14172 bifunctional 5,10-met 98.0 4.8E-05 1E-09 69.5 10.8 80 139-234 153-233 (278)
149 cd05213 NAD_bind_Glutamyl_tRNA 98.0 1.4E-05 3E-10 74.7 7.5 90 142-233 176-275 (311)
150 PRK14177 bifunctional 5,10-met 98.0 2.9E-05 6.2E-10 71.1 9.1 80 139-234 154-234 (284)
151 PRK14166 bifunctional 5,10-met 98.0 3.1E-05 6.7E-10 70.9 9.0 80 139-234 152-232 (282)
152 PRK14173 bifunctional 5,10-met 98.0 3.5E-05 7.5E-10 70.8 9.2 135 139-306 150-285 (287)
153 PLN02353 probable UDP-glucose 98.0 0.00016 3.5E-09 71.2 14.6 131 145-276 2-176 (473)
154 COG0240 GpsA Glycerol-3-phosph 98.0 2.2E-05 4.8E-10 73.0 8.0 91 145-237 2-111 (329)
155 PRK14180 bifunctional 5,10-met 98.0 4.1E-05 8.9E-10 70.1 9.4 79 139-233 153-232 (282)
156 PRK08229 2-dehydropantoate 2-r 98.0 2.5E-05 5.3E-10 73.7 8.2 102 145-250 3-125 (341)
157 PLN02516 methylenetetrahydrofo 98.0 3.6E-05 7.7E-10 71.0 8.9 136 139-304 162-298 (299)
158 PRK14187 bifunctional 5,10-met 98.0 4.3E-05 9.3E-10 70.3 9.4 80 139-234 155-235 (294)
159 PRK00045 hemA glutamyl-tRNA re 98.0 1.6E-05 3.5E-10 77.4 6.8 89 141-232 179-281 (423)
160 PRK14182 bifunctional 5,10-met 98.0 5E-05 1.1E-09 69.5 9.6 80 139-234 152-232 (282)
161 PLN02897 tetrahydrofolate dehy 97.9 4.7E-05 1E-09 71.3 9.1 80 139-234 209-289 (345)
162 PRK06141 ornithine cyclodeamin 97.9 5.1E-05 1.1E-09 71.0 9.5 86 143-234 124-222 (314)
163 TIGR03376 glycerol3P_DH glycer 97.9 3.7E-05 8E-10 72.7 8.5 89 146-236 1-121 (342)
164 PLN02616 tetrahydrofolate dehy 97.9 4.5E-05 9.7E-10 71.8 8.8 80 139-234 226-306 (364)
165 COG0677 WecC UDP-N-acetyl-D-ma 97.9 0.00012 2.7E-09 69.2 11.5 138 145-290 10-190 (436)
166 PRK14193 bifunctional 5,10-met 97.9 7E-05 1.5E-09 68.7 9.6 113 139-288 153-268 (284)
167 PRK14181 bifunctional 5,10-met 97.9 6.8E-05 1.5E-09 68.8 9.5 80 139-234 148-232 (287)
168 COG0190 FolD 5,10-methylene-te 97.9 4.3E-05 9.4E-10 69.4 7.9 114 139-288 151-265 (283)
169 PRK00258 aroE shikimate 5-dehy 97.9 2.6E-05 5.7E-10 71.7 6.5 108 141-250 120-238 (278)
170 cd01078 NAD_bind_H4MPT_DH NADP 97.8 4.9E-05 1.1E-09 66.0 7.2 94 139-236 23-134 (194)
171 PRK14174 bifunctional 5,10-met 97.8 8.8E-05 1.9E-09 68.5 9.0 80 139-234 154-238 (295)
172 PRK14184 bifunctional 5,10-met 97.8 6.9E-05 1.5E-09 68.8 8.1 79 139-233 152-235 (286)
173 TIGR02371 ala_DH_arch alanine 97.8 4.5E-05 9.8E-10 71.7 7.1 85 144-234 128-225 (325)
174 PRK14185 bifunctional 5,10-met 97.8 0.00011 2.4E-09 67.6 9.4 80 139-234 152-236 (293)
175 PRK14168 bifunctional 5,10-met 97.8 9.3E-05 2E-09 68.3 8.8 135 139-303 156-295 (297)
176 TIGR00507 aroE shikimate 5-deh 97.8 9.4E-05 2E-09 67.7 8.8 105 142-251 115-232 (270)
177 PRK14167 bifunctional 5,10-met 97.8 9.9E-05 2.1E-09 68.1 8.8 80 139-234 152-236 (297)
178 PRK12921 2-dehydropantoate 2-r 97.8 8.5E-05 1.8E-09 68.7 8.5 102 146-251 2-121 (305)
179 PRK00676 hemA glutamyl-tRNA re 97.8 7.4E-05 1.6E-09 70.2 7.8 93 141-234 171-264 (338)
180 PTZ00345 glycerol-3-phosphate 97.8 9.5E-05 2.1E-09 70.5 8.5 91 145-237 12-135 (365)
181 PRK06522 2-dehydropantoate 2-r 97.8 0.00017 3.8E-09 66.5 10.1 102 146-251 2-119 (304)
182 TIGR02354 thiF_fam2 thiamine b 97.7 0.00016 3.5E-09 63.3 8.8 95 140-235 17-149 (200)
183 COG1712 Predicted dinucleotide 97.7 8.3E-05 1.8E-09 65.2 6.5 93 146-243 2-103 (255)
184 cd01076 NAD_bind_1_Glu_DH NAD( 97.6 0.0013 2.8E-08 58.7 13.3 104 140-251 27-154 (227)
185 TIGR01546 GAPDH-II_archae glyc 97.6 0.00013 2.9E-09 68.5 7.1 83 147-232 1-109 (333)
186 PF13380 CoA_binding_2: CoA bi 97.6 0.00032 7E-09 55.9 8.3 100 145-251 1-104 (116)
187 PRK07340 ornithine cyclodeamin 97.6 0.00021 4.6E-09 66.6 8.3 86 143-235 124-221 (304)
188 PRK11730 fadB multifunctional 97.6 0.0004 8.6E-09 72.0 10.9 111 145-259 314-453 (715)
189 PRK12439 NAD(P)H-dependent gly 97.6 0.00018 3.9E-09 68.1 7.6 87 145-234 8-114 (341)
190 PRK13940 glutamyl-tRNA reducta 97.6 0.0002 4.4E-09 69.5 7.4 86 141-231 178-273 (414)
191 KOG2653 6-phosphogluconate deh 97.5 0.00074 1.6E-08 63.0 10.5 155 145-310 7-175 (487)
192 COG0373 HemA Glutamyl-tRNA red 97.5 0.00024 5.2E-09 68.3 7.3 90 141-233 175-276 (414)
193 cd05313 NAD_bind_2_Glu_DH NAD( 97.5 0.0021 4.5E-08 58.3 12.9 151 140-304 34-222 (254)
194 PRK14620 NAD(P)H-dependent gly 97.5 0.00031 6.8E-09 65.9 8.0 87 146-234 2-109 (326)
195 cd05211 NAD_bind_Glu_Leu_Phe_V 97.5 0.0036 7.7E-08 55.5 14.1 104 140-251 19-145 (217)
196 PF13241 NAD_binding_7: Putati 97.5 4.5E-05 9.7E-10 59.5 1.8 86 141-231 4-91 (103)
197 PRK06046 alanine dehydrogenase 97.5 0.00039 8.5E-09 65.4 8.4 82 144-232 129-224 (326)
198 PRK12549 shikimate 5-dehydroge 97.5 0.00026 5.7E-09 65.3 6.8 90 142-234 125-230 (284)
199 PRK08618 ornithine cyclodeamin 97.5 0.00042 9.1E-09 65.2 8.3 84 143-233 126-223 (325)
200 PRK13301 putative L-aspartate 97.5 0.0006 1.3E-08 61.8 8.8 99 145-248 3-113 (267)
201 COG1064 AdhP Zn-dependent alco 97.5 0.00029 6.4E-09 66.1 7.0 38 143-180 166-203 (339)
202 PRK06249 2-dehydropantoate 2-r 97.5 0.0024 5.3E-08 59.6 13.3 106 145-254 6-128 (313)
203 TIGR02992 ectoine_eutC ectoine 97.5 0.00054 1.2E-08 64.5 8.9 84 143-232 128-225 (326)
204 PRK14982 acyl-ACP reductase; P 97.5 0.00044 9.6E-09 65.2 8.0 95 138-238 149-253 (340)
205 COG1250 FadB 3-hydroxyacyl-CoA 97.4 0.0015 3.3E-08 60.6 11.4 115 144-262 3-146 (307)
206 TIGR02441 fa_ox_alpha_mit fatt 97.4 0.0007 1.5E-08 70.4 10.2 111 145-259 336-475 (737)
207 PF02423 OCD_Mu_crystall: Orni 97.4 0.00034 7.3E-09 65.5 6.9 87 145-235 129-228 (313)
208 TIGR02440 FadJ fatty oxidation 97.4 0.0012 2.6E-08 68.4 11.0 111 145-259 305-445 (699)
209 PRK09310 aroDE bifunctional 3- 97.4 0.00055 1.2E-08 67.7 8.1 100 139-250 327-433 (477)
210 TIGR02437 FadB fatty oxidation 97.4 0.0012 2.6E-08 68.5 10.8 100 145-247 314-442 (714)
211 PLN02477 glutamate dehydrogena 97.4 0.0043 9.3E-08 60.0 13.8 105 139-251 201-329 (410)
212 PRK11154 fadJ multifunctional 97.4 0.0014 2.9E-08 68.1 11.0 110 145-258 310-449 (708)
213 PRK06823 ornithine cyclodeamin 97.4 0.00074 1.6E-08 63.2 8.2 83 144-232 128-223 (315)
214 PF02153 PDH: Prephenate dehyd 97.3 0.0011 2.3E-08 60.3 8.9 120 159-281 1-133 (258)
215 PRK06199 ornithine cyclodeamin 97.3 0.00059 1.3E-08 65.5 7.3 88 144-234 155-262 (379)
216 COG2423 Predicted ornithine cy 97.3 0.0017 3.6E-08 61.1 10.0 82 145-232 131-226 (330)
217 PF00185 OTCace: Aspartate/orn 97.3 0.0021 4.7E-08 54.0 9.7 89 143-231 1-120 (158)
218 COG1004 Ugd Predicted UDP-gluc 97.3 0.0049 1.1E-07 58.7 13.0 145 146-295 2-184 (414)
219 KOG2304 3-hydroxyacyl-CoA dehy 97.3 0.00017 3.8E-09 63.3 3.0 117 143-263 10-161 (298)
220 PTZ00117 malate dehydrogenase; 97.3 0.0013 2.8E-08 61.7 9.0 114 142-256 3-151 (319)
221 PF01113 DapB_N: Dihydrodipico 97.3 0.002 4.4E-08 51.8 8.8 97 146-247 2-114 (124)
222 PRK08291 ectoine utilization p 97.3 0.00067 1.4E-08 63.9 6.9 82 144-231 132-227 (330)
223 TIGR01763 MalateDH_bact malate 97.3 0.00096 2.1E-08 62.2 7.8 111 145-256 2-147 (305)
224 KOG0023 Alcohol dehydrogenase, 97.2 0.00066 1.4E-08 62.7 6.3 36 143-178 181-216 (360)
225 TIGR01921 DAP-DH diaminopimela 97.2 0.0014 3E-08 61.4 8.4 102 145-251 4-115 (324)
226 PRK06718 precorrin-2 dehydroge 97.2 0.00072 1.6E-08 59.3 6.1 41 137-177 3-43 (202)
227 PRK13303 L-aspartate dehydroge 97.2 0.0016 3.4E-08 59.5 8.4 102 145-251 2-115 (265)
228 PF01408 GFO_IDH_MocA: Oxidore 97.2 0.0011 2.3E-08 52.5 6.4 100 146-250 2-114 (120)
229 PRK06407 ornithine cyclodeamin 97.2 0.0017 3.7E-08 60.5 8.6 85 144-234 117-215 (301)
230 smart00859 Semialdhyde_dh Semi 97.2 0.001 2.2E-08 53.2 6.1 84 146-231 1-99 (122)
231 PRK14031 glutamate dehydrogena 97.1 0.0097 2.1E-07 58.1 13.6 106 139-251 223-361 (444)
232 PRK08306 dipicolinate synthase 97.1 0.0035 7.6E-08 58.2 10.1 104 143-251 1-116 (296)
233 cd00650 LDH_MDH_like NAD-depen 97.1 0.001 2.2E-08 60.6 6.3 109 147-257 1-148 (263)
234 COG1748 LYS9 Saccharopine dehy 97.1 0.0023 4.9E-08 61.3 8.6 98 145-249 2-116 (389)
235 PRK07589 ornithine cyclodeamin 97.1 0.0018 4E-08 61.3 7.8 84 145-232 130-226 (346)
236 COG0026 PurK Phosphoribosylami 97.0 0.0013 2.9E-08 61.9 6.4 58 144-201 1-68 (375)
237 PRK12548 shikimate 5-dehydroge 97.0 0.0047 1E-07 57.1 10.0 37 141-177 123-160 (289)
238 PRK09414 glutamate dehydrogena 97.0 0.0034 7.4E-08 61.3 9.4 106 139-251 227-362 (445)
239 COG0771 MurD UDP-N-acetylmuram 97.0 0.0019 4.1E-08 63.0 7.6 120 142-262 5-157 (448)
240 PRK06444 prephenate dehydrogen 97.0 0.0009 2E-08 58.4 4.7 60 146-234 2-62 (197)
241 TIGR01470 cysG_Nterm siroheme 97.0 0.025 5.4E-07 49.7 13.4 42 137-178 2-43 (205)
242 COG0334 GdhA Glutamate dehydro 96.9 0.014 3.1E-07 55.9 12.4 146 139-304 202-380 (411)
243 TIGR02356 adenyl_thiF thiazole 96.9 0.0027 5.8E-08 55.6 6.6 37 140-176 17-54 (202)
244 PRK00856 pyrB aspartate carbam 96.9 0.0082 1.8E-07 56.0 10.2 89 142-231 154-262 (305)
245 TIGR01809 Shik-DH-AROM shikima 96.9 0.0012 2.6E-08 60.9 4.5 64 142-205 123-200 (282)
246 PRK12749 quinate/shikimate deh 96.9 0.0066 1.4E-07 56.2 9.4 38 141-178 121-159 (288)
247 PRK06719 precorrin-2 dehydroge 96.9 0.002 4.2E-08 54.2 5.3 42 136-177 5-46 (157)
248 cd05291 HicDH_like L-2-hydroxy 96.8 0.0045 9.8E-08 57.7 8.1 92 145-238 1-122 (306)
249 PF01118 Semialdhyde_dh: Semia 96.8 0.0016 3.4E-08 52.2 4.3 83 146-233 1-99 (121)
250 PRK14030 glutamate dehydrogena 96.8 0.024 5.1E-07 55.4 13.1 155 139-304 223-412 (445)
251 PTZ00082 L-lactate dehydrogena 96.8 0.0048 1E-07 57.9 7.8 112 142-254 4-153 (321)
252 PRK06223 malate dehydrogenase; 96.8 0.0055 1.2E-07 57.0 8.1 59 145-204 3-79 (307)
253 PRK00683 murD UDP-N-acetylmura 96.7 0.0027 5.9E-08 61.7 6.0 105 144-248 3-127 (418)
254 PRK00066 ldh L-lactate dehydro 96.7 0.0057 1.2E-07 57.3 7.9 89 143-231 5-122 (315)
255 PRK12475 thiamine/molybdopteri 96.7 0.0043 9.4E-08 58.7 7.1 38 140-177 20-58 (338)
256 PF00208 ELFV_dehydrog: Glutam 96.7 0.0047 1E-07 55.7 7.0 105 141-251 29-165 (244)
257 PTZ00079 NADP-specific glutama 96.7 0.014 3.1E-07 56.9 10.6 106 139-251 232-371 (454)
258 PRK08269 3-hydroxybutyryl-CoA 96.7 0.017 3.8E-07 54.0 10.8 90 155-246 1-128 (314)
259 cd00757 ThiF_MoeB_HesA_family 96.7 0.0046 1E-07 55.1 6.5 148 140-307 17-206 (228)
260 TIGR02717 AcCoA-syn-alpha acet 96.6 0.016 3.5E-07 56.9 10.7 107 142-251 5-123 (447)
261 PF02558 ApbA: Ketopantoate re 96.6 0.0023 5.1E-08 52.8 4.1 104 147-253 1-122 (151)
262 PRK00048 dihydrodipicolinate r 96.6 0.0093 2E-07 54.2 8.4 61 145-205 2-70 (257)
263 PF03720 UDPG_MGDP_dh_C: UDP-g 96.6 0.005 1.1E-07 48.1 5.7 76 154-230 17-100 (106)
264 COG1648 CysG Siroheme synthase 96.6 0.0038 8.1E-08 55.1 5.2 88 137-230 5-102 (210)
265 PLN02527 aspartate carbamoyltr 96.6 0.02 4.3E-07 53.4 10.3 89 142-231 149-266 (306)
266 PRK05690 molybdopterin biosynt 96.6 0.0054 1.2E-07 55.4 6.3 87 140-230 28-153 (245)
267 TIGR00670 asp_carb_tr aspartat 96.5 0.019 4.1E-07 53.4 9.9 89 142-231 148-263 (301)
268 TIGR02964 xanthine_xdhC xanthi 96.5 0.015 3.2E-07 52.6 9.0 88 145-250 101-188 (246)
269 COG5322 Predicted dehydrogenas 96.5 0.0089 1.9E-07 54.0 7.0 97 138-239 161-269 (351)
270 PRK02255 putrescine carbamoylt 96.5 0.025 5.4E-07 53.5 10.3 91 141-231 151-272 (338)
271 PRK01710 murD UDP-N-acetylmura 96.4 0.012 2.6E-07 57.9 8.5 108 141-249 11-143 (458)
272 TIGR03026 NDP-sugDHase nucleot 96.4 0.015 3.3E-07 56.4 9.0 86 142-230 311-409 (411)
273 cd01339 LDH-like_MDH L-lactate 96.4 0.0075 1.6E-07 56.0 6.3 57 147-204 1-75 (300)
274 TIGR02355 moeB molybdopterin s 96.4 0.0095 2.1E-07 53.6 6.7 37 140-176 20-57 (240)
275 PRK00779 ornithine carbamoyltr 96.4 0.027 5.8E-07 52.5 9.8 90 142-231 150-265 (304)
276 PRK01713 ornithine carbamoyltr 96.3 0.025 5.4E-07 53.4 9.5 91 141-231 153-275 (334)
277 cd05297 GH4_alpha_glucosidase_ 96.3 0.0085 1.8E-07 58.4 6.4 60 146-205 2-84 (423)
278 cd05293 LDH_1 A subgroup of L- 96.3 0.013 2.9E-07 54.8 7.3 91 145-238 4-125 (312)
279 PRK04207 glyceraldehyde-3-phos 96.3 0.019 4E-07 54.5 8.4 61 146-206 3-89 (341)
280 TIGR02853 spore_dpaA dipicolin 96.3 0.037 7.9E-07 51.2 10.1 103 144-251 1-115 (287)
281 cd05312 NAD_bind_1_malic_enz N 96.3 0.33 7.2E-06 44.6 16.1 180 104-306 4-224 (279)
282 PF13478 XdhC_C: XdhC Rossmann 96.3 0.011 2.4E-07 48.5 5.9 85 147-254 1-85 (136)
283 PRK08762 molybdopterin biosynt 96.2 0.017 3.6E-07 55.5 8.0 37 140-176 131-168 (376)
284 KOG2711 Glycerol-3-phosphate d 96.2 0.019 4.1E-07 53.6 7.8 91 142-234 19-142 (372)
285 cd00762 NAD_bind_malic_enz NAD 96.2 0.14 3E-06 46.4 13.2 176 104-304 4-223 (254)
286 PRK06019 phosphoribosylaminoim 96.2 0.011 2.4E-07 56.6 6.6 58 144-201 2-69 (372)
287 TIGR01850 argC N-acetyl-gamma- 96.2 0.017 3.7E-07 54.8 7.5 83 145-233 1-101 (346)
288 PRK05708 2-dehydropantoate 2-r 96.1 0.023 5.1E-07 52.9 8.1 108 145-255 3-127 (305)
289 PRK08328 hypothetical protein; 96.1 0.018 3.9E-07 51.5 6.9 37 140-176 23-60 (231)
290 COG0569 TrkA K+ transport syst 96.1 0.0097 2.1E-07 53.0 5.1 64 145-208 1-79 (225)
291 COG1004 Ugd Predicted UDP-gluc 96.1 0.02 4.4E-07 54.6 7.4 84 142-229 308-406 (414)
292 PLN02968 Probable N-acetyl-gam 96.1 0.013 2.8E-07 56.4 6.2 93 143-241 37-144 (381)
293 PRK14106 murD UDP-N-acetylmura 96.0 0.037 7.9E-07 54.2 9.5 107 141-247 2-132 (450)
294 cd01492 Aos1_SUMO Ubiquitin ac 96.0 0.017 3.8E-07 50.3 6.4 37 140-176 17-54 (197)
295 PRK13814 pyrB aspartate carbam 96.0 0.047 1E-06 51.0 9.5 89 142-231 155-264 (310)
296 PRK07232 bifunctional malic en 96.0 0.22 4.7E-06 51.9 15.1 156 89-281 152-325 (752)
297 TIGR00036 dapB dihydrodipicoli 96.0 0.032 6.9E-07 51.0 8.2 60 146-205 3-78 (266)
298 PRK02102 ornithine carbamoyltr 96.0 0.029 6.3E-07 52.9 8.0 90 142-231 153-273 (331)
299 TIGR00658 orni_carb_tr ornithi 96.0 0.051 1.1E-06 50.7 9.6 90 142-231 146-264 (304)
300 COG0169 AroE Shikimate 5-dehyd 96.0 0.036 7.9E-07 51.1 8.4 102 141-247 123-240 (283)
301 PRK10637 cysG siroheme synthas 96.0 0.016 3.6E-07 57.0 6.6 91 136-231 4-103 (457)
302 PRK01390 murD UDP-N-acetylmura 96.0 0.036 7.8E-07 54.5 9.0 108 141-248 6-139 (460)
303 PRK08644 thiamine biosynthesis 95.9 0.037 8E-07 48.9 8.1 37 140-176 24-61 (212)
304 PRK08223 hypothetical protein; 95.9 0.027 6E-07 51.9 7.4 80 140-219 23-142 (287)
305 PRK05600 thiamine biosynthesis 95.9 0.014 3.1E-07 55.8 5.7 79 140-219 37-154 (370)
306 PLN02353 probable UDP-glucose 95.9 0.04 8.7E-07 54.5 8.9 98 141-242 321-456 (473)
307 PRK12862 malic enzyme; Reviewe 95.9 0.27 5.8E-06 51.5 15.3 155 90-281 161-333 (763)
308 PRK06270 homoserine dehydrogen 95.9 0.045 9.7E-07 51.9 8.9 107 145-251 3-146 (341)
309 PRK11891 aspartate carbamoyltr 95.8 0.047 1E-06 53.1 9.1 91 141-231 238-355 (429)
310 PRK09496 trkA potassium transp 95.8 0.023 5E-07 55.5 7.1 65 145-209 1-79 (453)
311 PLN02342 ornithine carbamoyltr 95.8 0.089 1.9E-06 49.9 10.7 90 142-231 192-307 (348)
312 PRK05597 molybdopterin biosynt 95.8 0.015 3.3E-07 55.4 5.6 37 140-176 24-61 (355)
313 PRK00436 argC N-acetyl-gamma-g 95.8 0.031 6.6E-07 53.0 7.5 89 145-238 3-106 (343)
314 cd05292 LDH_2 A subgroup of L- 95.8 0.016 3.5E-07 54.0 5.6 60 146-206 2-78 (308)
315 PRK02006 murD UDP-N-acetylmura 95.8 0.022 4.7E-07 56.7 6.6 109 142-250 5-148 (498)
316 PRK04284 ornithine carbamoyltr 95.8 0.034 7.4E-07 52.5 7.6 90 142-231 153-274 (332)
317 PRK07688 thiamine/molybdopteri 95.8 0.026 5.7E-07 53.4 6.8 37 140-176 20-57 (339)
318 PF13460 NAD_binding_10: NADH( 95.8 0.016 3.4E-07 49.0 4.9 62 147-208 1-73 (183)
319 PRK11579 putative oxidoreducta 95.8 0.02 4.4E-07 54.1 6.1 64 145-208 5-77 (346)
320 PF04016 DUF364: Domain of unk 95.7 0.033 7.2E-07 46.3 6.6 84 142-234 9-98 (147)
321 PRK07411 hypothetical protein; 95.7 0.025 5.3E-07 54.6 6.7 83 140-223 34-155 (390)
322 PRK03515 ornithine carbamoyltr 95.7 0.035 7.7E-07 52.4 7.6 91 141-231 153-275 (336)
323 PRK03369 murD UDP-N-acetylmura 95.7 0.016 3.5E-07 57.5 5.5 106 142-247 10-141 (488)
324 PRK12861 malic enzyme; Reviewe 95.7 0.33 7.2E-06 50.6 15.0 178 90-304 157-357 (764)
325 PRK14027 quinate/shikimate deh 95.7 0.016 3.4E-07 53.5 5.0 38 142-179 125-163 (283)
326 PLN02602 lactate dehydrogenase 95.7 0.046 1E-06 51.9 8.2 86 145-231 38-154 (350)
327 PRK02472 murD UDP-N-acetylmura 95.7 0.081 1.8E-06 51.7 10.2 107 142-248 3-133 (447)
328 PF00056 Ldh_1_N: lactate/mala 95.7 0.0079 1.7E-07 49.6 2.6 91 146-238 2-123 (141)
329 PF02254 TrkA_N: TrkA-N domain 95.6 0.028 6E-07 44.1 5.5 81 147-229 1-94 (116)
330 PLN02520 bifunctional 3-dehydr 95.6 0.032 7E-07 56.0 7.1 38 141-178 376-413 (529)
331 PRK12550 shikimate 5-dehydroge 95.6 0.042 9E-07 50.4 7.3 62 144-205 122-188 (272)
332 PF03435 Saccharop_dh: Sacchar 95.6 0.013 2.8E-07 56.2 4.1 60 147-206 1-78 (386)
333 PRK00141 murD UDP-N-acetylmura 95.5 0.023 5.1E-07 56.2 5.8 109 141-249 12-147 (473)
334 TIGR01381 E1_like_apg7 E1-like 95.5 0.041 8.9E-07 55.8 7.4 62 101-175 308-370 (664)
335 PLN02948 phosphoribosylaminoim 95.5 0.039 8.5E-07 55.9 7.3 65 140-204 18-92 (577)
336 PRK12562 ornithine carbamoyltr 95.5 0.049 1.1E-06 51.4 7.5 92 141-232 153-276 (334)
337 PRK13529 malate dehydrogenase; 95.4 0.95 2.1E-05 45.5 16.6 211 64-306 237-501 (563)
338 PRK07877 hypothetical protein; 95.4 0.075 1.6E-06 55.1 9.3 94 140-237 103-235 (722)
339 PRK07878 molybdopterin biosynt 95.4 0.042 9.1E-07 53.1 6.8 37 140-176 38-75 (392)
340 PRK04690 murD UDP-N-acetylmura 95.4 0.034 7.5E-07 54.9 6.3 106 142-247 6-139 (468)
341 PF02629 CoA_binding: CoA bind 95.3 0.059 1.3E-06 41.2 6.3 62 144-205 3-72 (96)
342 PRK05678 succinyl-CoA syntheta 95.3 0.13 2.9E-06 47.5 9.7 104 144-251 8-118 (291)
343 cd01486 Apg7 Apg7 is an E1-lik 95.3 0.073 1.6E-06 49.4 7.8 30 146-175 1-31 (307)
344 PRK14804 ornithine carbamoyltr 95.3 0.1 2.2E-06 48.8 8.9 62 141-202 150-225 (311)
345 PRK11064 wecC UDP-N-acetyl-D-m 95.3 0.052 1.1E-06 52.9 7.1 68 139-206 315-397 (415)
346 COG0281 SfcA Malic enzyme [Ene 95.3 0.49 1.1E-05 45.6 13.4 179 88-304 165-370 (432)
347 PRK05786 fabG 3-ketoacyl-(acyl 95.3 0.058 1.3E-06 47.4 6.9 38 141-178 2-40 (238)
348 PRK05562 precorrin-2 dehydroge 95.3 0.8 1.7E-05 40.8 14.0 42 137-178 18-59 (223)
349 cd01483 E1_enzyme_family Super 95.3 0.19 4E-06 41.1 9.5 32 146-177 1-33 (143)
350 COG4007 Predicted dehydrogenas 95.3 0.41 9E-06 43.3 12.0 86 156-245 33-128 (340)
351 cd01487 E1_ThiF_like E1_ThiF_l 95.2 0.061 1.3E-06 45.9 6.7 32 146-177 1-33 (174)
352 PRK09880 L-idonate 5-dehydroge 95.2 0.094 2E-06 49.3 8.6 85 143-232 169-267 (343)
353 TIGR01202 bchC 2-desacetyl-2-h 95.2 0.063 1.4E-06 49.8 7.3 85 143-232 144-232 (308)
354 PRK05086 malate dehydrogenase; 95.2 0.065 1.4E-06 50.1 7.3 89 145-233 1-120 (312)
355 PF03447 NAD_binding_3: Homose 95.2 0.02 4.4E-07 45.2 3.3 95 151-250 1-112 (117)
356 TIGR03316 ygeW probable carbam 95.1 0.11 2.4E-06 49.4 8.7 62 141-202 167-252 (357)
357 cd01338 MDH_choloroplast_like 95.1 0.16 3.5E-06 47.7 9.7 98 145-244 3-139 (322)
358 PRK00421 murC UDP-N-acetylmura 95.1 0.037 8.1E-07 54.5 5.7 108 142-249 5-133 (461)
359 TIGR03366 HpnZ_proposed putati 95.1 0.12 2.7E-06 47.0 8.8 36 143-178 120-156 (280)
360 cd05188 MDR Medium chain reduc 95.1 0.27 5.8E-06 43.6 10.8 36 143-178 134-169 (271)
361 PRK08192 aspartate carbamoyltr 95.1 0.13 2.9E-06 48.6 9.0 62 140-201 155-232 (338)
362 PRK07806 short chain dehydroge 95.1 0.092 2E-06 46.5 7.7 37 141-177 3-40 (248)
363 PRK04148 hypothetical protein; 95.0 0.047 1E-06 44.6 5.1 62 143-205 16-87 (134)
364 PRK10669 putative cation:proto 95.0 0.042 9E-07 55.5 5.8 83 145-229 418-513 (558)
365 PRK06349 homoserine dehydrogen 95.0 0.11 2.3E-06 50.9 8.4 103 145-251 4-125 (426)
366 TIGR01161 purK phosphoribosyla 95.0 0.049 1.1E-06 51.6 5.9 56 146-201 1-66 (352)
367 PRK01368 murD UDP-N-acetylmura 95.0 0.043 9.3E-07 54.0 5.6 104 143-247 5-128 (454)
368 PLN02819 lysine-ketoglutarate 95.0 0.081 1.8E-06 56.9 8.0 64 143-206 568-659 (1042)
369 PRK15182 Vi polysaccharide bio 94.9 0.14 3.1E-06 50.0 9.1 94 139-235 309-416 (425)
370 PRK06392 homoserine dehydrogen 94.9 0.11 2.3E-06 49.0 8.0 105 146-251 2-137 (326)
371 PRK13376 pyrB bifunctional asp 94.9 0.16 3.5E-06 50.7 9.6 91 141-231 171-293 (525)
372 PF05222 AlaDh_PNT_N: Alanine 94.9 0.28 6E-06 40.2 9.4 93 158-260 18-119 (136)
373 PRK04308 murD UDP-N-acetylmura 94.9 0.072 1.6E-06 52.2 7.0 108 142-249 3-136 (445)
374 PRK03659 glutathione-regulated 94.9 0.049 1.1E-06 55.5 5.9 88 144-233 400-500 (601)
375 PRK07200 aspartate/ornithine c 94.8 0.13 2.9E-06 49.6 8.5 62 141-202 184-269 (395)
376 PRK09496 trkA potassium transp 94.8 0.081 1.7E-06 51.7 7.0 87 142-230 229-330 (453)
377 cd00300 LDH_like L-lactate deh 94.8 0.09 1.9E-06 48.9 6.9 84 147-231 1-115 (300)
378 COG1893 ApbA Ketopantoate redu 94.8 0.44 9.6E-06 44.5 11.6 136 145-284 1-154 (307)
379 COG0673 MviM Predicted dehydro 94.7 0.093 2E-06 49.0 7.1 66 145-210 4-82 (342)
380 PRK08300 acetaldehyde dehydrog 94.7 0.13 2.8E-06 47.8 7.8 83 144-231 4-101 (302)
381 PRK15076 alpha-galactosidase; 94.7 0.053 1.1E-06 53.0 5.5 109 145-254 2-169 (431)
382 PF03949 Malic_M: Malic enzyme 94.7 0.27 6E-06 44.5 9.6 121 104-247 4-157 (255)
383 cd08230 glucose_DH Glucose deh 94.6 0.12 2.6E-06 48.8 7.4 85 143-232 172-270 (355)
384 TIGR01759 MalateDH-SF1 malate 94.5 0.19 4.1E-06 47.3 8.5 94 145-240 4-136 (323)
385 PF00899 ThiF: ThiF family; I 94.5 0.044 9.5E-07 44.5 3.8 34 144-177 2-36 (135)
386 cd00704 MDH Malate dehydrogena 94.4 0.32 7E-06 45.7 9.8 97 145-243 1-136 (323)
387 PF05368 NmrA: NmrA-like famil 94.4 0.074 1.6E-06 47.0 5.3 60 147-206 1-75 (233)
388 TIGR01761 thiaz-red thiazoliny 94.4 0.24 5.3E-06 46.9 9.0 105 145-253 4-119 (343)
389 cd05294 LDH-like_MDH_nadp A la 94.4 0.36 7.8E-06 45.1 10.1 106 145-253 1-145 (309)
390 PF00070 Pyr_redox: Pyridine n 94.4 0.087 1.9E-06 38.6 4.8 35 146-180 1-35 (80)
391 PLN02586 probable cinnamyl alc 94.1 0.23 5E-06 47.1 8.3 85 143-232 183-279 (360)
392 PRK14851 hypothetical protein; 94.0 0.13 2.7E-06 53.2 6.7 36 140-175 39-75 (679)
393 PRK03562 glutathione-regulated 94.0 0.11 2.3E-06 53.3 6.3 84 144-229 400-496 (621)
394 cd01488 Uba3_RUB Ubiquitin act 94.0 0.21 4.6E-06 46.2 7.6 88 146-234 1-131 (291)
395 PRK11863 N-acetyl-gamma-glutam 94.0 0.16 3.4E-06 47.6 6.8 76 145-231 3-81 (313)
396 PRK05442 malate dehydrogenase; 94.0 0.46 9.9E-06 44.8 9.9 97 145-243 5-140 (326)
397 PLN03129 NADP-dependent malic 94.0 2.4 5.2E-05 42.8 15.3 188 88-306 287-520 (581)
398 TIGR01087 murD UDP-N-acetylmur 94.0 0.23 5.1E-06 48.3 8.2 103 146-249 1-128 (433)
399 cd01489 Uba2_SUMO Ubiquitin ac 94.0 0.31 6.8E-06 45.6 8.6 83 146-232 1-123 (312)
400 PLN00106 malate dehydrogenase 93.9 0.17 3.8E-06 47.5 6.9 92 143-234 17-138 (323)
401 TIGR03215 ac_ald_DH_ac acetald 93.9 0.28 6.1E-06 45.3 8.2 64 145-208 2-77 (285)
402 PRK07523 gluconate 5-dehydroge 93.9 0.16 3.4E-06 45.3 6.4 38 141-178 7-45 (255)
403 PRK08265 short chain dehydroge 93.9 0.25 5.3E-06 44.4 7.7 38 141-178 3-41 (261)
404 PRK06523 short chain dehydroge 93.8 0.4 8.8E-06 42.7 9.0 40 139-178 4-44 (260)
405 PLN02214 cinnamoyl-CoA reducta 93.8 0.19 4.1E-06 47.3 7.1 64 141-204 7-90 (342)
406 PLN00112 malate dehydrogenase 93.8 0.36 7.8E-06 47.3 9.1 97 145-243 101-236 (444)
407 PTZ00317 NADP-dependent malic 93.8 5.1 0.00011 40.3 17.1 213 63-304 238-498 (559)
408 PLN02662 cinnamyl-alcohol dehy 93.8 0.19 4.2E-06 46.3 7.0 62 143-204 3-85 (322)
409 PRK04523 N-acetylornithine car 93.7 0.57 1.2E-05 44.3 10.0 62 142-203 166-252 (335)
410 PTZ00325 malate dehydrogenase; 93.7 0.16 3.5E-06 47.7 6.3 64 142-205 6-86 (321)
411 PLN03209 translocon at the inn 93.7 0.11 2.4E-06 52.4 5.4 64 142-205 78-169 (576)
412 PRK07231 fabG 3-ketoacyl-(acyl 93.7 0.2 4.3E-06 44.3 6.7 38 141-178 2-40 (251)
413 cd01491 Ube1_repeat1 Ubiquitin 93.7 0.38 8.3E-06 44.4 8.6 38 140-177 15-53 (286)
414 PRK10206 putative oxidoreducta 93.7 0.14 3.1E-06 48.5 5.9 63 146-208 3-77 (344)
415 TIGR01019 sucCoAalpha succinyl 93.6 0.59 1.3E-05 43.2 9.8 104 144-251 6-116 (286)
416 CHL00194 ycf39 Ycf39; Provisio 93.6 0.13 2.8E-06 47.8 5.6 59 146-204 2-73 (317)
417 PRK01438 murD UDP-N-acetylmura 93.6 0.11 2.4E-06 51.3 5.4 108 139-247 11-146 (480)
418 PRK12937 short chain dehydroge 93.6 0.34 7.3E-06 42.6 8.0 35 142-176 3-38 (245)
419 PRK08374 homoserine dehydrogen 93.5 0.59 1.3E-05 44.2 9.9 114 145-263 3-156 (336)
420 PLN02819 lysine-ketoglutarate 93.5 0.21 4.6E-06 53.8 7.5 89 141-231 200-338 (1042)
421 PRK15057 UDP-glucose 6-dehydro 93.5 0.25 5.4E-06 47.7 7.4 64 142-205 294-369 (388)
422 cd05290 LDH_3 A subgroup of L- 93.5 0.13 2.8E-06 48.0 5.3 60 146-205 1-78 (307)
423 PRK03803 murD UDP-N-acetylmura 93.5 0.36 7.8E-06 47.3 8.7 105 144-248 6-133 (448)
424 KOG0399 Glutamate synthase [Am 93.5 0.2 4.4E-06 53.6 7.0 66 142-207 1783-1882(2142)
425 TIGR01772 MDH_euk_gproteo mala 93.5 0.33 7.1E-06 45.5 7.9 91 146-238 1-121 (312)
426 TIGR02822 adh_fam_2 zinc-bindi 93.4 0.25 5.4E-06 46.2 7.1 85 143-232 165-255 (329)
427 cd08237 ribitol-5-phosphate_DH 93.3 0.38 8.2E-06 45.2 8.3 88 143-232 163-257 (341)
428 TIGR01758 MDH_euk_cyt malate d 93.3 0.58 1.3E-05 44.0 9.4 93 146-240 1-132 (324)
429 PRK15181 Vi polysaccharide bio 93.3 0.19 4.2E-06 47.4 6.2 36 142-177 13-49 (348)
430 PLN02178 cinnamyl-alcohol dehy 93.1 0.5 1.1E-05 45.2 8.8 35 143-177 178-212 (375)
431 PRK07533 enoyl-(acyl carrier p 93.1 0.46 9.9E-06 42.7 8.2 37 141-177 7-46 (258)
432 PRK08217 fabG 3-ketoacyl-(acyl 93.1 0.12 2.7E-06 45.6 4.4 37 142-178 3-40 (253)
433 PLN02989 cinnamyl-alcohol dehy 93.1 0.29 6.4E-06 45.3 7.1 62 143-204 4-86 (325)
434 COG3288 PntA NAD/NADP transhyd 93.1 0.2 4.3E-06 46.3 5.6 92 139-231 159-281 (356)
435 TIGR01532 E4PD_g-proteo D-eryt 93.1 0.22 4.8E-06 46.9 6.2 29 146-174 1-33 (325)
436 PLN02657 3,8-divinyl protochlo 93.1 0.21 4.5E-06 48.2 6.2 39 139-177 55-94 (390)
437 COG0540 PyrB Aspartate carbamo 93.0 0.23 5E-06 45.9 6.0 117 61-201 97-230 (316)
438 cd08255 2-desacetyl-2-hydroxye 93.0 0.28 6.1E-06 44.1 6.6 87 143-234 97-193 (277)
439 PRK08324 short chain dehydroge 93.0 0.22 4.8E-06 51.6 6.5 39 140-178 418-457 (681)
440 TIGR01771 L-LDH-NAD L-lactate 92.9 0.24 5.1E-06 46.1 6.1 83 149-231 1-113 (299)
441 COG0039 Mdh Malate/lactate deh 92.9 0.17 3.6E-06 47.3 5.0 64 145-208 1-84 (313)
442 cd08239 THR_DH_like L-threonin 92.9 0.61 1.3E-05 43.4 9.0 85 143-232 163-263 (339)
443 TIGR03649 ergot_EASG ergot alk 92.8 0.25 5.5E-06 44.9 6.1 61 146-206 1-78 (285)
444 PRK14805 ornithine carbamoyltr 92.8 0.99 2.1E-05 42.1 10.0 88 142-231 145-261 (302)
445 cd01485 E1-1_like Ubiquitin ac 92.8 0.12 2.7E-06 45.0 3.8 37 140-176 15-52 (198)
446 cd08281 liver_ADH_like1 Zinc-d 92.8 0.41 8.9E-06 45.5 7.7 85 143-232 191-291 (371)
447 PLN02427 UDP-apiose/xylose syn 92.8 0.26 5.6E-06 47.1 6.3 65 139-203 9-94 (386)
448 PLN02695 GDP-D-mannose-3',5'-e 92.8 0.26 5.5E-06 47.1 6.2 61 143-203 20-93 (370)
449 PRK06701 short chain dehydroge 92.7 0.41 8.8E-06 44.0 7.3 38 140-177 42-80 (290)
450 PRK09186 flagellin modificatio 92.7 0.26 5.7E-06 43.7 5.9 37 142-178 2-39 (256)
451 PRK08264 short chain dehydroge 92.7 0.29 6.4E-06 42.9 6.1 39 141-179 3-43 (238)
452 cd01337 MDH_glyoxysomal_mitoch 92.7 0.53 1.1E-05 44.0 8.0 90 146-238 2-122 (310)
453 PRK05884 short chain dehydroge 92.6 0.39 8.5E-06 42.2 6.9 33 146-178 2-35 (223)
454 TIGR03201 dearomat_had 6-hydro 92.6 0.41 8.8E-06 45.1 7.3 36 143-178 166-201 (349)
455 PRK12826 3-ketoacyl-(acyl-carr 92.6 0.28 6.2E-06 43.2 6.0 39 140-178 2-41 (251)
456 KOG4230 C1-tetrahydrofolate sy 92.6 0.3 6.5E-06 48.7 6.4 137 139-305 157-294 (935)
457 PRK06153 hypothetical protein; 92.5 0.12 2.6E-06 49.5 3.6 36 141-176 173-209 (393)
458 cd05283 CAD1 Cinnamyl alcohol 92.5 0.57 1.2E-05 43.7 8.1 85 143-232 169-264 (337)
459 PRK05717 oxidoreductase; Valid 92.5 0.57 1.2E-05 41.7 7.8 37 141-177 7-44 (255)
460 COG0078 ArgF Ornithine carbamo 92.5 1.1 2.3E-05 41.5 9.5 90 142-231 151-270 (310)
461 PRK06079 enoyl-(acyl carrier p 92.5 0.46 1E-05 42.5 7.2 36 141-176 4-42 (252)
462 PRK07424 bifunctional sterol d 92.5 0.22 4.7E-06 48.4 5.4 64 141-204 175-254 (406)
463 PRK07370 enoyl-(acyl carrier p 92.4 0.26 5.7E-06 44.3 5.6 36 141-176 3-41 (258)
464 TIGR03451 mycoS_dep_FDH mycoth 92.4 0.57 1.2E-05 44.2 8.1 85 143-232 176-277 (358)
465 PRK12367 short chain dehydroge 92.4 0.25 5.5E-06 44.3 5.4 65 140-204 10-88 (245)
466 PRK06841 short chain dehydroge 92.4 0.54 1.2E-05 41.7 7.5 38 141-178 12-50 (255)
467 PRK06196 oxidoreductase; Provi 92.4 0.34 7.3E-06 45.0 6.4 38 141-178 23-61 (315)
468 PRK03806 murD UDP-N-acetylmura 92.4 0.21 4.5E-06 48.8 5.1 106 142-247 4-129 (438)
469 TIGR01214 rmlD dTDP-4-dehydror 92.4 0.28 6E-06 44.5 5.7 57 146-205 1-60 (287)
470 PRK14852 hypothetical protein; 92.3 0.33 7.3E-06 51.7 6.8 160 140-307 328-545 (989)
471 PLN02896 cinnamyl-alcohol dehy 92.3 0.29 6.3E-06 46.1 5.9 66 139-204 5-88 (353)
472 cd00755 YgdL_like Family of ac 92.3 0.17 3.7E-06 45.2 4.1 120 140-263 7-184 (231)
473 cd01336 MDH_cytoplasmic_cytoso 92.2 0.38 8.3E-06 45.3 6.6 94 145-240 3-135 (325)
474 PRK06728 aspartate-semialdehyd 92.2 0.63 1.4E-05 44.2 8.0 81 144-231 5-99 (347)
475 COG1063 Tdh Threonine dehydrog 92.2 0.43 9.3E-06 45.3 6.9 85 144-233 169-271 (350)
476 PRK06128 oxidoreductase; Provi 92.2 0.25 5.5E-06 45.5 5.3 36 141-176 52-88 (300)
477 PRK06172 short chain dehydroge 92.2 0.27 6E-06 43.6 5.3 38 141-178 4-42 (253)
478 PRK07890 short chain dehydroge 92.2 0.44 9.5E-06 42.3 6.7 37 142-178 3-40 (258)
479 TIGR03466 HpnA hopanoid-associ 92.1 0.29 6.2E-06 45.1 5.6 60 145-204 1-73 (328)
480 COG2344 AT-rich DNA-binding pr 92.1 0.24 5.2E-06 42.6 4.5 60 146-205 86-156 (211)
481 TIGR02622 CDP_4_6_dhtase CDP-g 92.1 0.38 8.2E-06 45.3 6.4 37 142-178 2-39 (349)
482 PRK06398 aldose dehydrogenase; 92.1 0.6 1.3E-05 41.8 7.4 38 141-178 3-41 (258)
483 PRK04663 murD UDP-N-acetylmura 92.1 0.86 1.9E-05 44.6 9.0 106 142-247 4-132 (438)
484 COG2910 Putative NADH-flavin r 92.0 0.36 7.8E-06 41.6 5.4 62 145-206 1-73 (211)
485 PLN02740 Alcohol dehydrogenase 92.0 0.65 1.4E-05 44.3 8.0 36 143-178 198-234 (381)
486 PLN02514 cinnamyl-alcohol dehy 91.9 0.57 1.2E-05 44.3 7.5 85 143-232 180-276 (357)
487 TIGR03589 PseB UDP-N-acetylglu 91.9 0.36 7.8E-06 45.1 6.0 63 142-204 2-83 (324)
488 PRK07889 enoyl-(acyl carrier p 91.9 0.29 6.2E-06 44.0 5.1 37 141-177 4-43 (256)
489 COG0493 GltD NADPH-dependent g 91.8 0.66 1.4E-05 45.7 7.9 67 139-205 118-218 (457)
490 PRK08628 short chain dehydroge 91.8 0.32 7E-06 43.3 5.4 38 141-178 4-42 (258)
491 PRK07856 short chain dehydroge 91.8 0.37 7.9E-06 42.9 5.7 38 141-178 3-41 (252)
492 PRK07984 enoyl-(acyl carrier p 91.7 0.6 1.3E-05 42.2 7.1 35 142-176 4-41 (262)
493 TIGR01142 purT phosphoribosylg 91.7 0.34 7.3E-06 46.2 5.7 34 146-179 1-34 (380)
494 PRK06182 short chain dehydroge 91.6 0.85 1.8E-05 41.1 8.0 36 143-178 2-38 (273)
495 PRK12939 short chain dehydroge 91.6 0.3 6.5E-06 43.0 4.9 38 141-178 4-42 (250)
496 TIGR01851 argC_other N-acetyl- 91.6 0.63 1.4E-05 43.4 7.0 76 146-231 3-80 (310)
497 PRK08862 short chain dehydroge 91.5 0.28 6E-06 43.4 4.5 38 141-178 2-40 (227)
498 PRK05866 short chain dehydroge 91.3 0.32 6.9E-06 44.8 4.9 40 139-178 35-75 (293)
499 cd01490 Ube1_repeat2 Ubiquitin 91.3 0.73 1.6E-05 45.1 7.5 32 146-177 1-38 (435)
500 PRK10537 voltage-gated potassi 91.3 0.94 2E-05 43.8 8.2 83 144-228 240-333 (393)
No 1
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=4.6e-73 Score=528.82 Aligned_cols=309 Identities=34% Similarity=0.542 Sum_probs=277.2
Q ss_pred ceEEEEeCCCChHHHHHHHhcCcEEEecC-CCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcC
Q 021361 3 KIGVLMTTPMSNYLEQELAARFTLFKLWT-QSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKI 81 (313)
Q Consensus 3 ~~~vl~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i 81 (313)
+|+|++++++.++..+.|++.+++..... .+...+++.+.++++|+++++ ..++++++++++|+||||++.|+|+|+|
T Consensus 2 ~~~vl~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~ad~li~~-~~~~~~~~l~~~p~Lk~I~~~g~G~d~i 80 (323)
T PRK15409 2 KPSVILYKALPDDLLQRLEEHFTVTQVANLSPETVEQHAAAFAEAEGLLGS-GEKVDAALLEKMPKLRAASTISVGYDNF 80 (323)
T ss_pred CceEEEeCCCCHHHHHHHHhcCcEEEcCCCCCCCHHHHHHHhcCCeEEEEc-CCCCCHHHHhhCCCCeEEEECceecccc
Confidence 38899999998888888888776654322 122345566678899999875 4589999999999999999999999999
Q ss_pred ChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCC--CcccccccCCCEEEEEcCChhHHHH
Q 021361 82 DLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNG--HFELGSKFSGKSVGIVGLGRIGTAI 159 (313)
Q Consensus 82 d~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~--~~~~~~~l~g~~vgiiG~G~iG~~~ 159 (313)
|+++|.++||.|+|+|++++++||||++++||++.|++..+++.+++|.|... ....|++|+||++||||+|+||+.+
T Consensus 81 d~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~v 160 (323)
T PRK15409 81 DVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMAL 160 (323)
T ss_pred cHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999632 1224789999999999999999999
Q ss_pred HHHHH-hcCCcEEEECCCCccc----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCC
Q 021361 160 AKRVE-AFGCPISYHSRSEKSD----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGA 234 (313)
Q Consensus 160 a~~l~-~~g~~V~~~~~~~~~~----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~ 234 (313)
|++++ +|||+|.+|+|+.... .+. ...++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||+
T Consensus 161 a~~l~~~fgm~V~~~~~~~~~~~~~~~~~-~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ 239 (323)
T PRK15409 161 AQRAHFGFNMPILYNARRHHKEAEERFNA-RYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGP 239 (323)
T ss_pred HHHHHhcCCCEEEEECCCCchhhHHhcCc-EecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCcc
Confidence 99998 9999999999875432 122 24689999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHhCCceEEEccCCCCCCCCC-cccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021361 235 HIDEPELVSALLEGRLAGAGLDVYENEPEVP-EQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPVI 313 (313)
Q Consensus 235 ~vd~~al~~al~~g~~~ga~lDV~~~EP~~~-~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~ 313 (313)
+||++||+++|++|+++||+||||++||++. +|||++|||++|||+||+|.+++.++...+++||.+|++|+++.+.||
T Consensus 240 vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn 319 (323)
T PRK15409 240 VVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYNMAACAVDNLIDALQGKVEKNCVN 319 (323)
T ss_pred ccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcccC
Confidence 9999999999999999999999999999864 589999999999999999999999999999999999999999998876
No 2
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-73 Score=528.21 Aligned_cols=308 Identities=31% Similarity=0.507 Sum_probs=276.9
Q ss_pred CCceEEEEeCCCChHHHHHHHhcCcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCc
Q 021361 1 MEKIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDK 80 (313)
Q Consensus 1 m~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~ 80 (313)
+.+++|+.++++.+..++.+................+++.+.++++|++++ ...++++++++++|+||||++.|+|+||
T Consensus 1 ~~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~-~~~~v~~~~l~~~~~Lk~I~~~g~Gvd~ 79 (324)
T COG0111 1 KMMIKVLVTDPLAPDALEELLAAYDVEVPDGPDLDEEELLEALADADALIV-SVTPVTEEVLAAAPNLKAIGRAGAGVDN 79 (324)
T ss_pred CCcceeeccCccCHHHHHHHHhccccccccccccchHHHHhhcccCcEEEE-ecCCCCHHHHhhCCCceEEEEccccccc
Confidence 357889999999999998887652222211222234556677899999998 7889999999999999999999999999
Q ss_pred CChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHH
Q 021361 81 IDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIA 160 (313)
Q Consensus 81 id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a 160 (313)
+|+++++++||.|+|+|+.|+.+||||+++++|+++|+++.+++.+++|.|.+. ...|.+|+||||||||+|+||+.+|
T Consensus 80 id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~-~~~g~el~gkTvGIiG~G~IG~~va 158 (324)
T COG0111 80 IDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRK-AFRGTELAGKTVGIIGLGRIGRAVA 158 (324)
T ss_pred cCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCcccc-ccccccccCCEEEEECCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999862 3357799999999999999999999
Q ss_pred HHHHhcCCcEEEECCCCccc-c---cccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCcc
Q 021361 161 KRVEAFGCPISYHSRSEKSD-A---NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHI 236 (313)
Q Consensus 161 ~~l~~~g~~V~~~~~~~~~~-~---~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~v 236 (313)
+++++|||+|++|||..... . +.....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++|
T Consensus 159 ~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vV 238 (324)
T COG0111 159 KRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVV 238 (324)
T ss_pred HHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCccee
Confidence 99999999999999955432 2 2344578999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhCCceEEEccCCCCCCCCCc-ccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 021361 237 DEPELVSALLEGRLAGAGLDVYENEPEVPE-QMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLT 310 (313)
Q Consensus 237 d~~al~~al~~g~~~ga~lDV~~~EP~~~~-~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~ 310 (313)
|++||++||++|+|+||+||||++||++++ |||++|||++|||+||.|.++.+++...+++|+.+|++|+++.|
T Consensus 239 de~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~~~~~~~~~i~~~l~g~~~~~ 313 (324)
T COG0111 239 DEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRYLAGGPVVN 313 (324)
T ss_pred cHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999998875 99999999999999999999999999999999999999999543
No 3
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=2.2e-71 Score=515.36 Aligned_cols=309 Identities=38% Similarity=0.620 Sum_probs=280.7
Q ss_pred ceEEEEeCCCChHHHHHHHhcCcEEEecCC-CcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcC
Q 021361 3 KIGVLMTTPMSNYLEQELAARFTLFKLWTQ-SCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKI 81 (313)
Q Consensus 3 ~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i 81 (313)
|+.++.+.++.++..+++.+.|++..+... +... ++.+..+++|++++....++++++++++|+||+|+..++|+||+
T Consensus 2 k~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~i~~~~l~~~p~LKlIa~~~~G~D~v 80 (324)
T COG1052 2 KIVVLSTRKLPPEVLERLKEKFEVERYEDDLTPDT-ELAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSAGYDNV 80 (324)
T ss_pred CcEEEecCcCCHHHHHHhhccEEEEEeccCCccch-HHHHHhcCCcEEEEcCCCCcCHHHHHhCCCcEEEEEeccccCcc
Confidence 567888889999999999988887654432 2222 56677899999999878999999999999999999999999999
Q ss_pred ChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCC---cccccccCCCEEEEEcCChhHHH
Q 021361 82 DLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGH---FELGSKFSGKSVGIVGLGRIGTA 158 (313)
Q Consensus 82 d~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~---~~~~~~l~g~~vgiiG~G~iG~~ 158 (313)
|+++++++||.|+|+|++++++||||++++||++.|++.++++++|+|.|.... ...+++++|||+||||+|+||++
T Consensus 81 Dl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~a 160 (324)
T COG1052 81 DLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQA 160 (324)
T ss_pred cHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHH
Confidence 999999999999999999999999999999999999999999999999998542 24578999999999999999999
Q ss_pred HHHHHHhcCCcEEEECCCCcc----cccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCC
Q 021361 159 IAKRVEAFGCPISYHSRSEKS----DANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGA 234 (313)
Q Consensus 159 ~a~~l~~~g~~V~~~~~~~~~----~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~ 234 (313)
+|+++++|||+|.||+|++.+ ..++.+ .++++++++||+|++|||+|++|+|+||++.|++||+|+++||+|||+
T Consensus 161 vA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y-~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~ 239 (324)
T COG1052 161 VARRLKGFGMKVLYYDRSPNPEAEKELGARY-VDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGG 239 (324)
T ss_pred HHHHHhcCCCEEEEECCCCChHHHhhcCcee-ccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCcc
Confidence 999999999999999999752 122333 459999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHhCCceEEEccCCCCCCCC-CcccCCCCc---EEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 021361 235 HIDEPELVSALLEGRLAGAGLDVYENEPEV-PEQMLGLNN---VVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLT 310 (313)
Q Consensus 235 ~vd~~al~~al~~g~~~ga~lDV~~~EP~~-~~~l~~~pn---vi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~ 310 (313)
+||++||++||++|+++||++|||+.||.. +++|++++| +++|||+|++|.+++.+|.+.+++|+++|++|+++.+
T Consensus 240 ~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea~~~m~~~~~~nl~~~~~g~~~~~ 319 (324)
T COG1052 240 LVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDGGVPPN 319 (324)
T ss_pred ccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999999985 568887766 9999999999999999999999999999999999999
Q ss_pred CCC
Q 021361 311 PVI 313 (313)
Q Consensus 311 ~v~ 313 (313)
.|+
T Consensus 320 ~v~ 322 (324)
T COG1052 320 EVN 322 (324)
T ss_pred CCC
Confidence 875
No 4
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=1.3e-70 Score=515.14 Aligned_cols=310 Identities=39% Similarity=0.597 Sum_probs=278.2
Q ss_pred ceEEEEeCCCChHHHHHHHhcCcEEEecCC-CcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcC
Q 021361 3 KIGVLMTTPMSNYLEQELAARFTLFKLWTQ-SCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKI 81 (313)
Q Consensus 3 ~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i 81 (313)
||+|++++++.+...+.+++.+++..+... ....+++.+.++++|+++++...++++++++++|+||||+++|+|+|++
T Consensus 2 ~~kil~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G~d~i 81 (333)
T PRK13243 2 KPKVFITREIPENGIEMLEEHFEVEVWEDEREIPREVLLEKVRDVDALVTMLSERIDCEVFEAAPRLRIVANYAVGYDNI 81 (333)
T ss_pred CceEEEECCCCHHHHHHHhcCceEEEecCCCCCCHHHHHHHhCCCcEEEEeCCCCCCHHHHhhCCCCeEEEecCcccccc
Confidence 378999998888888888877655433211 2234556667889999998766689999999999999999999999999
Q ss_pred ChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCC------cccccccCCCEEEEEcCChh
Q 021361 82 DLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGH------FELGSKFSGKSVGIVGLGRI 155 (313)
Q Consensus 82 d~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~------~~~~~~l~g~~vgiiG~G~i 155 (313)
|+++++++||.|+|++|+++.+||||++++||+++|++..+++.+++|.|.+.. ...|++|+||+|||||+|.|
T Consensus 82 d~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~I 161 (333)
T PRK13243 82 DVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRI 161 (333)
T ss_pred CHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcCHH
Confidence 999999999999999999999999999999999999999999999999997321 12468999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEECCCCcccc----cccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcC
Q 021361 156 GTAIAKRVEAFGCPISYHSRSEKSDA----NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIG 231 (313)
Q Consensus 156 G~~~a~~l~~~g~~V~~~~~~~~~~~----~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~ 231 (313)
|+.+|++|++|||+|.+|||+..... +. ...++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|
T Consensus 162 G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~a 240 (333)
T PRK13243 162 GQAVARRAKGFGMRILYYSRTRKPEAEKELGA-EYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTA 240 (333)
T ss_pred HHHHHHHHHHCCCEEEEECCCCChhhHHHcCC-EecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECc
Confidence 99999999999999999999765421 12 24589999999999999999999999999999999999999999999
Q ss_pred CCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 021361 232 RGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTP 311 (313)
Q Consensus 232 rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~ 311 (313)
||+++|+++|+++|++|+|+||+||||++||++++|||++|||++|||+||+|.++..++.+.+++|+.+|++|+++.|.
T Consensus 241 Rg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~ 320 (333)
T PRK13243 241 RGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFEAREGMAELVAENLIAFKRGEVPPTL 320 (333)
T ss_pred CchhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEEECCcCCcCHHHHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 99999999999999999999999999999998877999999999999999999999999999999999999999999988
Q ss_pred CC
Q 021361 312 VI 313 (313)
Q Consensus 312 v~ 313 (313)
||
T Consensus 321 v~ 322 (333)
T PRK13243 321 VN 322 (333)
T ss_pred cC
Confidence 75
No 5
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-70 Score=510.21 Aligned_cols=299 Identities=26% Similarity=0.431 Sum_probs=263.2
Q ss_pred EEEEeCC--CChHHHHHHHhcCcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcCC
Q 021361 5 GVLMTTP--MSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKID 82 (313)
Q Consensus 5 ~vl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id 82 (313)
+|++.++ +.+..++.|++.+++..+ .. ...+++.+.++++|+++++ ..++++++++++|+||||+++|+|+|++|
T Consensus 2 ki~~~~~~~~~~~~~~~l~~~~~~~~~-~~-~~~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id 78 (311)
T PRK08410 2 KIVILDAKTLGDKDLSVFEEFGDFQIY-PT-TSPEEVIERIKDANIIITN-KVVIDKEVLSQLPNLKLICITATGTNNVD 78 (311)
T ss_pred eEEEEecCCCChhhHHHHhhCceEEEe-CC-CCHHHHHHHhCCCCEEEEC-CCCCCHHHHhhCCCCeEEEEccccccccc
Confidence 4666665 566667778776654432 21 1334556678899999875 56899999999999999999999999999
Q ss_pred hhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCc-----ccccccCCCEEEEEcCChhHH
Q 021361 83 LDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHF-----ELGSKFSGKSVGIVGLGRIGT 157 (313)
Q Consensus 83 ~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~-----~~~~~l~g~~vgiiG~G~iG~ 157 (313)
+++++++||.|+|+|++++++||||++++||+++|++..+++.+++|.|..... ..+++|+||+|||||+|+||+
T Consensus 79 ~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~ 158 (311)
T PRK08410 79 IEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGK 158 (311)
T ss_pred HHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHH
Confidence 999999999999999999999999999999999999999999999999974221 124789999999999999999
Q ss_pred HHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccC
Q 021361 158 AIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHID 237 (313)
Q Consensus 158 ~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd 237 (313)
.+|+++++|||+|++|||+...........++++++++||+|++|+|+|++|+++|+++.|++||||++|||+|||++||
T Consensus 159 ~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVD 238 (311)
T PRK08410 159 RVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVN 238 (311)
T ss_pred HHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccC
Confidence 99999999999999999975432211124689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCceEEEccCCCCCCCCC-cccCCC---CcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 021361 238 EPELVSALLEGRLAGAGLDVYENEPEVP-EQMLGL---NNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKP 307 (313)
Q Consensus 238 ~~al~~al~~g~~~ga~lDV~~~EP~~~-~~l~~~---pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~ 307 (313)
++||+++|++|+++ |+||||++||+++ +|||++ |||++|||+||+|.++..++...+++|+.+|++|++
T Consensus 239 e~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e~~~~~~~~~~~nl~~~~~g~~ 311 (311)
T PRK08410 239 EKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEARKTLIEKVKENIKDFLEGGK 311 (311)
T ss_pred HHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999 9999999999875 589986 899999999999999999999999999999999974
No 6
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=5.3e-70 Score=523.10 Aligned_cols=312 Identities=25% Similarity=0.406 Sum_probs=279.4
Q ss_pred CCceEEEEeCCCChHHHHHHHhc-CcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCC
Q 021361 1 MEKIGVLMTTPMSNYLEQELAAR-FTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLD 79 (313)
Q Consensus 1 m~~~~vl~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d 79 (313)
|++++|++++++.+...+.|++. ++.+.........+++.+.++++|++++.+..++++++++++|+||||+++|+|+|
T Consensus 8 ~~~~~ili~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d 87 (409)
T PRK11790 8 KDKIKFLLLEGVHQSAVEVLRAAGYTNIEYHKGALDEEELIEAIKDAHFIGIRSRTQLTEEVLAAAEKLVAIGCFCIGTN 87 (409)
T ss_pred CCCeEEEEECCCCHHHHHHHHhcCCceEEECCCCCCHHHHHHHcCCCCEEEEeCCCCCCHHHHhhCCCCeEEEECceecc
Confidence 45789999998888888888764 52332222223445566678899998877667899999999999999999999999
Q ss_pred cCChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHH
Q 021361 80 KIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAI 159 (313)
Q Consensus 80 ~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~ 159 (313)
++|+++++++||.|+|+||+++++||||++++||++.|++..+++.+++|.|.+.. ..+++|+||+|||||+|+||+.+
T Consensus 88 ~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~-~~~~~L~gktvGIiG~G~IG~~v 166 (409)
T PRK11790 88 QVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSA-AGSFEVRGKTLGIVGYGHIGTQL 166 (409)
T ss_pred cccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccc-cCcccCCCCEEEEECCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999997532 34789999999999999999999
Q ss_pred HHHHHhcCCcEEEECCCCcccc-cccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCH
Q 021361 160 AKRVEAFGCPISYHSRSEKSDA-NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDE 238 (313)
Q Consensus 160 a~~l~~~g~~V~~~~~~~~~~~-~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~ 238 (313)
|+++++|||+|++||++..... +.....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||+
T Consensus 167 A~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde 246 (409)
T PRK11790 167 SVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDI 246 (409)
T ss_pred HHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCH
Confidence 9999999999999998754322 233456899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCceEEEccCCCCCCCCC-----cccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021361 239 PELVSALLEGRLAGAGLDVYENEPEVP-----EQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPVI 313 (313)
Q Consensus 239 ~al~~al~~g~~~ga~lDV~~~EP~~~-----~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~ 313 (313)
+||+++|++|+++||++|||++||++. +|||++|||++|||+||+|.++.+++...+++|+.+|++|+++.+.||
T Consensus 247 ~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~~~~~~~~vn 326 (409)
T PRK11790 247 DALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEAQENIGLEVAGKLVKYSDNGSTLSAVN 326 (409)
T ss_pred HHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHHHHHHHHHHHHHHHHHHHcCCCcCccee
Confidence 999999999999999999999999764 489999999999999999999999999999999999999999998876
No 7
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-69 Score=505.52 Aligned_cols=304 Identities=25% Similarity=0.430 Sum_probs=264.1
Q ss_pred EEEEeCCC----ChHHHHHHHhcCcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCc
Q 021361 5 GVLMTTPM----SNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDK 80 (313)
Q Consensus 5 ~vl~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~ 80 (313)
+|++.+.. .+...+.+++.+..+..... ...+++.+.++++|+++++ ..++++++++++|+||||+++|+|+|+
T Consensus 2 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~ 79 (317)
T PRK06487 2 RAVFLDHDSLDLGDLDLSPLEQAFDELQLHDA-TTPEQVAERLRGAQVAISN-KVALDAAALAAAPQLKLILVAATGTNN 79 (317)
T ss_pred eEEEEccccCCccccchhHHHhhCCeEEEecC-CCHHHHHHHhCCCeEEEEe-CCCCCHHHHhhCCCCeEEEEcCccccc
Confidence 36666542 23455667766544333222 2345566778899988875 467999999999999999999999999
Q ss_pred CChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCc-----ccccccCCCEEEEEcCChh
Q 021361 81 IDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHF-----ELGSKFSGKSVGIVGLGRI 155 (313)
Q Consensus 81 id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~-----~~~~~l~g~~vgiiG~G~i 155 (313)
+|++++.++||.|+|++++++.+||||++++||++.|++..+++.+++|.|..... ..+++|+||+|||||+|+|
T Consensus 80 id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~I 159 (317)
T PRK06487 80 VDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGEL 159 (317)
T ss_pred cCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHH
Confidence 99999999999999999999999999999999999999999999999999974211 1246899999999999999
Q ss_pred HHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCc
Q 021361 156 GTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAH 235 (313)
Q Consensus 156 G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~ 235 (313)
|+.+|+++++|||+|++|+|+.... .. ...++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++
T Consensus 160 G~~vA~~l~~fgm~V~~~~~~~~~~-~~-~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~v 237 (317)
T PRK06487 160 GGAVARLAEAFGMRVLIGQLPGRPA-RP-DRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGL 237 (317)
T ss_pred HHHHHHHHhhCCCEEEEECCCCCcc-cc-cccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccc
Confidence 9999999999999999999874322 22 235899999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHhCCceEEEccCCCCCCCCC-cccCC--CCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 021361 236 IDEPELVSALLEGRLAGAGLDVYENEPEVP-EQMLG--LNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPV 312 (313)
Q Consensus 236 vd~~al~~al~~g~~~ga~lDV~~~EP~~~-~~l~~--~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v 312 (313)
||++||+++|++|+++||+||||++||+++ +|||. +|||++|||+||+|.++.+++...+++|+++|++|+|+ +.|
T Consensus 238 Vde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~-~~v 316 (317)
T PRK06487 238 VDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFFAGKPL-RVV 316 (317)
T ss_pred cCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCCC-cCC
Confidence 999999999999999999999999999876 58995 89999999999999999999999999999999999865 444
Q ss_pred C
Q 021361 313 I 313 (313)
Q Consensus 313 ~ 313 (313)
|
T Consensus 317 ~ 317 (317)
T PRK06487 317 S 317 (317)
T ss_pred C
Confidence 3
No 8
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=5.4e-69 Score=510.64 Aligned_cols=311 Identities=26% Similarity=0.413 Sum_probs=274.0
Q ss_pred ceEEEEeCCCChH-HHHHHHhc-CcEEEecC-C-CcchhhHHhcc-CCceEEEeeCCCCCCHHHhhcCCC--ceEEEEcC
Q 021361 3 KIGVLMTTPMSNY-LEQELAAR-FTLFKLWT-Q-SCKNKFFQENS-SAIRAVVGDTKCGADAELIDSLPT--LEIVASYS 75 (313)
Q Consensus 3 ~~~vl~~~~~~~~-~~~~l~~~-~~~~~~~~-~-~~~~~~l~~~~-~~~~~i~~~~~~~~~~~~l~~~~~--Lk~i~~~~ 75 (313)
|++|+++.++.+. ..+.|++. +++..+.. . ....+++.+.+ +++|+++++...++++++++++|+ ||+|++.|
T Consensus 15 ~~~v~~~~~~~~~~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~lk~I~~~~ 94 (386)
T PLN02306 15 KYRVVSTKPMPGTRWINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGGKAFSNMA 94 (386)
T ss_pred CceEEEeCCCCcHHHHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCceEEEECC
Confidence 6889999998774 67777764 55543221 1 23445566665 579999987777899999999996 69999999
Q ss_pred CCCCcCChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcC-C-CcccccccCCCEEEEEcCC
Q 021361 76 VGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKN-G-HFELGSKFSGKSVGIVGLG 153 (313)
Q Consensus 76 ~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~-~-~~~~~~~l~g~~vgiiG~G 153 (313)
+|+||+|+++++++||.|+|++++++.+||||++++||++.|++..+++.+++|.|.. . ....|++|+||+|||||+|
T Consensus 95 ~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G 174 (386)
T PLN02306 95 VGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAG 174 (386)
T ss_pred cccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCC
Confidence 9999999999999999999999999999999999999999999999999999998852 1 1224789999999999999
Q ss_pred hhHHHHHHHHH-hcCCcEEEECCCCcccc-------c------------ccccCCHHHHHhhCCeeEEecCCChHhhhcc
Q 021361 154 RIGTAIAKRVE-AFGCPISYHSRSEKSDA-------N------------YKYYTNIIDLASNCQILIVACSLTEETHHIV 213 (313)
Q Consensus 154 ~iG~~~a~~l~-~~g~~V~~~~~~~~~~~-------~------------~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i 213 (313)
.||+.+|++++ +|||+|++|||+.+... + .....++++++++||+|++|+|+|++|+++|
T Consensus 175 ~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~li 254 (386)
T PLN02306 175 RIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLI 254 (386)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhc
Confidence 99999999985 99999999998764210 0 1123589999999999999999999999999
Q ss_pred CHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHH
Q 021361 214 NRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMAD 293 (313)
Q Consensus 214 ~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~ 293 (313)
+++.|++||+|++|||+|||++||++||+++|++|++.||+||||++||+++++||++|||++|||+||+|.++++++.+
T Consensus 255 n~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~~L~~~pNVilTPHiag~T~e~~~~~~~ 334 (386)
T PLN02306 255 NKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPHIASASKWTREGMAT 334 (386)
T ss_pred CHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcchHhhCCCEEECCccccCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998777999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCC
Q 021361 294 LVIENLVAHFSNKPLLTPVI 313 (313)
Q Consensus 294 ~~~~ni~~~~~g~~~~~~v~ 313 (313)
.+++|+.+|++|+++.|.||
T Consensus 335 ~~~~ni~~~~~g~~~~~~~~ 354 (386)
T PLN02306 335 LAALNVLGKLKGYPVWGDPN 354 (386)
T ss_pred HHHHHHHHHHcCCCCccccc
Confidence 99999999999999999876
No 9
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-68 Score=497.82 Aligned_cols=270 Identities=24% Similarity=0.430 Sum_probs=245.9
Q ss_pred hhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcCChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHH
Q 021361 36 NKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAV 115 (313)
Q Consensus 36 ~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~ 115 (313)
.+++.+.++++|+++.. ..++++++++++|+||||++.++|+|++|++++.++||.|+|+|++++++||||++++||++
T Consensus 35 ~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l~l~~ 113 (314)
T PRK06932 35 AEQTIERAKDADIVITS-KVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFAL 113 (314)
T ss_pred hHHHHHHhCCCcEEEEe-CCCCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHHHHHH
Confidence 45556677899988874 56799999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHcCCCcCCCc-----ccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHH
Q 021361 116 LRRVCEFDEFVKSGKWKNGHF-----ELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNII 190 (313)
Q Consensus 116 ~r~~~~~~~~~~~~~w~~~~~-----~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~ 190 (313)
.|++..+++.+++|.|..... ..+++|+||+|||||+|.||+.+|+++++|||+|.+|+++....... .+.+++
T Consensus 114 ~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~~~~-~~~~l~ 192 (314)
T PRK06932 114 KHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASVCRE-GYTPFE 192 (314)
T ss_pred HhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccccccc-ccCCHH
Confidence 999999999999999973211 12468999999999999999999999999999999999865322221 246899
Q ss_pred HHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCC-cccC
Q 021361 191 DLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVP-EQML 269 (313)
Q Consensus 191 ~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~-~~l~ 269 (313)
+++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||+++|++|+++||+||||++||+++ +|||
T Consensus 193 ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~ 272 (314)
T PRK06932 193 EVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLI 272 (314)
T ss_pred HHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999865 5898
Q ss_pred ----CCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 021361 270 ----GLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKP 307 (313)
Q Consensus 270 ----~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~ 307 (313)
++|||++|||+||+|.++.+++.+.+++|+++|++|++
T Consensus 273 ~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g~ 314 (314)
T PRK06932 273 QAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQGK 314 (314)
T ss_pred HhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 59999999999999999999999999999999999874
No 10
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=1.4e-67 Score=496.65 Aligned_cols=305 Identities=26% Similarity=0.437 Sum_probs=266.5
Q ss_pred CCceEEEEeCCCChHH---HHHHHhcCcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCC
Q 021361 1 MEKIGVLMTTPMSNYL---EQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVG 77 (313)
Q Consensus 1 m~~~~vl~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G 77 (313)
|.||+||++.+..+.. .+++.+.+++..+.. . ..+++.+.++++|+++++ ..++++++++++|+||||++.++|
T Consensus 16 ~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~e~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G 92 (347)
T PLN02928 16 MRPTRVLFCGPEFPASYSYTREYLQKYPFIQVDA-V-AREDVPDVIANYDICVPK-MMRLDADIIARASQMKLIMQFGVG 92 (347)
T ss_pred CCCCEEEEECCCchhHHHHHHHHhhcCCeeEecC-C-CHHHHHHHhcCCcEEEEC-CCCCCHHHHhcCCCceEEEECCcc
Confidence 5688999998776653 223323444433222 1 234456677899998875 457899999999999999999999
Q ss_pred CCcCChhhhhcCCcEEEeCCCC---CcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCCh
Q 021361 78 LDKIDLDKCKDKAVRVTNTPDV---LTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGR 154 (313)
Q Consensus 78 ~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~ 154 (313)
+|++|++++.++||.|+|+|++ ++.+||||+++++|+++|++..+++.+++|.|.. +.+++|+||++||||+|.
T Consensus 93 ~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~---~~~~~l~gktvGIiG~G~ 169 (347)
T PLN02928 93 LEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGE---PIGDTLFGKTVFILGYGA 169 (347)
T ss_pred cCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccc---ccccCCCCCEEEEECCCH
Confidence 9999999999999999999975 7899999999999999999999999999999964 346789999999999999
Q ss_pred hHHHHHHHHHhcCCcEEEECCCCccccc----------------ccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHH
Q 021361 155 IGTAIAKRVEAFGCPISYHSRSEKSDAN----------------YKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVI 218 (313)
Q Consensus 155 iG~~~a~~l~~~g~~V~~~~~~~~~~~~----------------~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l 218 (313)
||+.+|++|++|||+|++|||+...... .....++++++++||+|++|+|+|++|+++|+++.|
T Consensus 170 IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l 249 (347)
T PLN02928 170 IGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFL 249 (347)
T ss_pred HHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHH
Confidence 9999999999999999999997432110 013468999999999999999999999999999999
Q ss_pred hhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCC-cccCCCCcEEEcCCCCCCcHHHHHHHHHHHHH
Q 021361 219 DALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVP-EQMLGLNNVVLLPHVGSDTEETSKAMADLVIE 297 (313)
Q Consensus 219 ~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~-~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ 297 (313)
++||+|++|||+|||++||++||+++|++|++.||+||||++||+++ +|||++|||++|||+||+|.++++++.+.+++
T Consensus 250 ~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~~~~~~~~~~~~ 329 (347)
T PLN02928 250 SSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRSMGKIVGD 329 (347)
T ss_pred hcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999865 59999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCC
Q 021361 298 NLVAHFSNKPLLTP 311 (313)
Q Consensus 298 ni~~~~~g~~~~~~ 311 (313)
|+.+|++|+|+.+.
T Consensus 330 nl~~~~~g~~~~~~ 343 (347)
T PLN02928 330 AALQLHAGRPLTGI 343 (347)
T ss_pred HHHHHHCCCCCCce
Confidence 99999999988764
No 11
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=3.3e-67 Score=497.39 Aligned_cols=294 Identities=24% Similarity=0.394 Sum_probs=262.2
Q ss_pred HHHHhc-CcEEEecCCCcchhhHHhccCCceEEEeeC--CCCCCHHHhhcCCCceEEEEcCCCCCcCChhhhhcCCcEEE
Q 021361 18 QELAAR-FTLFKLWTQSCKNKFFQENSSAIRAVVGDT--KCGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVT 94 (313)
Q Consensus 18 ~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~--~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~ 94 (313)
+.|++. ++++...+.+...+++.+.++++|++++.. ..++++++++++|+||||+++|+|+|++|++++.++||.|+
T Consensus 62 ~~l~~~g~e~~~~~~~~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~~p~LK~I~~~g~G~D~id~~aa~~~gI~V~ 141 (385)
T PRK07574 62 KFLEERGHELVVTSDKDGPDSDFEKELPDADVVISQPFWPAYLTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVA 141 (385)
T ss_pred HHHHhcCcEEEEeCCCCCCHHHHHHHcCCCeEEEEecCCCCCCCHHHHhhCCCCcEEEECCcccccccHHHHHHCCcEEE
Confidence 456655 444433222224466677789999999853 35799999999999999999999999999999999999999
Q ss_pred eCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCC-cccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEE
Q 021361 95 NTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGH-FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYH 173 (313)
Q Consensus 95 n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~-~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~ 173 (313)
|++++++.+||||++++||++.|++..+++.+++|.|.... ...+++|+|++|||||+|+||+.+|++|++|||+|++|
T Consensus 142 n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~ 221 (385)
T PRK07574 142 EVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYT 221 (385)
T ss_pred cCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 99999999999999999999999999999999999997432 12467899999999999999999999999999999999
Q ss_pred CCCCcc-----cccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 021361 174 SRSEKS-----DANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEG 248 (313)
Q Consensus 174 ~~~~~~-----~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g 248 (313)
||+... ..+.....++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||+++|++||+++|++|
T Consensus 222 dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG 301 (385)
T PRK07574 222 DRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESG 301 (385)
T ss_pred CCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhC
Confidence 998632 123334578999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEccCCCCCCCCC-cccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 021361 249 RLAGAGLDVYENEPEVP-EQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTP 311 (313)
Q Consensus 249 ~~~ga~lDV~~~EP~~~-~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~ 311 (313)
+|+||++|||++||+++ +|||++|||++|||+||+|.++++++.+.+++|+++|++|+++.|.
T Consensus 302 ~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~~G~~~~~~ 365 (385)
T PRK07574 302 HLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEGRPIRDE 365 (385)
T ss_pred CccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 99999999999999875 5999999999999999999999999999999999999999999875
No 12
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=3.9e-67 Score=518.21 Aligned_cols=306 Identities=27% Similarity=0.444 Sum_probs=276.2
Q ss_pred EEEEeCCCChHHHHHHHhc-CcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcCCh
Q 021361 5 GVLMTTPMSNYLEQELAAR-FTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKIDL 83 (313)
Q Consensus 5 ~vl~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~ 83 (313)
+|++++++.++..+.|++. +++.. .. ....+++.+.++++|++++++..++++++++++|+||||+++|+|+|++|+
T Consensus 1 ~vli~~~~~~~~~~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~ 78 (525)
T TIGR01327 1 KVLIADPISPDGIDILEDVGVEVDV-QT-GLSREELLEIIPDYDALIVRSATKVTEEVIAAAPKLKVIGRAGVGVDNIDI 78 (525)
T ss_pred CEEEeCCCCHHHHHHHHhcCcEEEe-CC-CCCHHHHHHHhcCCCEEEEcCCCCcCHHHHhhCCCceEEEECCcccchhcH
Confidence 4788999888888888765 44432 22 123455667789999999877778999999999999999999999999999
Q ss_pred hhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHH
Q 021361 84 DKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRV 163 (313)
Q Consensus 84 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l 163 (313)
+++.++||.|+|+|++++.+||||++++||+++|+++.+++.+++|.|.+. ...|.+|+||+|||||+|+||+.+|++|
T Consensus 79 ~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~-~~~g~~l~gktvgIiG~G~IG~~vA~~l 157 (525)
T TIGR01327 79 EAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRK-AFMGTELYGKTLGVIGLGRIGSIVAKRA 157 (525)
T ss_pred HHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCcccc-ccCccccCCCEEEEECCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999753 2357899999999999999999999999
Q ss_pred HhcCCcEEEECCCCccc----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHH
Q 021361 164 EAFGCPISYHSRSEKSD----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEP 239 (313)
Q Consensus 164 ~~~g~~V~~~~~~~~~~----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~ 239 (313)
++|||+|++|||+.... .+.....++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||+++|++
T Consensus 158 ~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~ 237 (525)
T TIGR01327 158 KAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEA 237 (525)
T ss_pred HhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHH
Confidence 99999999999864321 23333458999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021361 240 ELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPVI 313 (313)
Q Consensus 240 al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~ 313 (313)
||+++|++|+++||+||||++||++++|||++|||++|||+||+|.+++.++...+++|+.+|++|+++.+.||
T Consensus 238 aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn 311 (525)
T TIGR01327 238 ALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGLPVPNAVN 311 (525)
T ss_pred HHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeEECCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCceee
Confidence 99999999999999999999999777899999999999999999999999999999999999999999998875
No 13
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-66 Score=493.52 Aligned_cols=293 Identities=22% Similarity=0.342 Sum_probs=259.9
Q ss_pred HHHHHhc-CcEEEecCCCcchhhHHhccCCceEEEeeC--CCCCCHHHhhcCCCceEEEEcCCCCCcCChhhhhcCCcEE
Q 021361 17 EQELAAR-FTLFKLWTQSCKNKFFQENSSAIRAVVGDT--KCGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRV 93 (313)
Q Consensus 17 ~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~--~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v 93 (313)
.+.|++. ++++...+.+...+++.+.++++|++++.. ..++++++++++|+||||++.|+|+||||++++.++||.|
T Consensus 68 ~~~l~~~g~~~v~~~~~~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~iDl~aa~~~gI~V 147 (386)
T PLN03139 68 RDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTV 147 (386)
T ss_pred HHHHHhcCCeEEEeCCCCCCHHHHHHHhCCCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccccCHHHHHHCCeEE
Confidence 4556655 344433322234456677789999999853 2479999999999999999999999999999999999999
Q ss_pred EeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCC-cccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEE
Q 021361 94 TNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGH-FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISY 172 (313)
Q Consensus 94 ~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~-~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~ 172 (313)
+|++|+++.+||||++++||++.|++..+++.+++|.|.... ...+++|.||+|||||+|+||+.+|++|++|||+|.+
T Consensus 148 ~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~ 227 (386)
T PLN03139 148 AEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLY 227 (386)
T ss_pred EECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999999999999999997422 2346899999999999999999999999999999999
Q ss_pred ECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361 173 HSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLE 247 (313)
Q Consensus 173 ~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~ 247 (313)
||++.... .++....++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||+++|++||+++|++
T Consensus 228 ~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s 307 (386)
T PLN03139 228 HDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSS 307 (386)
T ss_pred ECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHc
Confidence 99975321 2333456899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEccCCCCCCCCC-cccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 021361 248 GRLAGAGLDVYENEPEVP-EQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLL 309 (313)
Q Consensus 248 g~~~ga~lDV~~~EP~~~-~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~ 309 (313)
|+++||++|||++||++. +|||.+||+++|||+||.|.+++.++.+.+++|+++|++|+++.
T Consensus 308 G~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~~G~~~~ 370 (386)
T PLN03139 308 GHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDFP 370 (386)
T ss_pred CCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999865 59999999999999999999999999999999999999999754
No 14
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-66 Score=514.73 Aligned_cols=306 Identities=28% Similarity=0.451 Sum_probs=276.0
Q ss_pred eEEEEeCCCChHHHHHHHhc--CcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcC
Q 021361 4 IGVLMTTPMSNYLEQELAAR--FTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKI 81 (313)
Q Consensus 4 ~~vl~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i 81 (313)
++|++++++.+...+.|++. +++.. .. ....+++.+.++++|+++++..+++++++++++|+||||+++|+|+|++
T Consensus 1 m~ili~~~~~~~~~~~l~~~~~~~v~~-~~-~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i 78 (526)
T PRK13581 1 MKVLVSDPISPAGLEILKDAPGVEVDV-KT-GLDKEELLEIIGDYDALIVRSATKVTAEVLEAAKNLKVIGRAGVGVDNV 78 (526)
T ss_pred CeEEEeCCCCHHHHHHHhccCCeEEEe-CC-CCCHHHHHHHhcCCCEEEEcCCCCCCHHHHhhCCCCeEEEECCcccccc
Confidence 36899999888888888775 33332 21 2234556667889999998777789999999999999999999999999
Q ss_pred ChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHH
Q 021361 82 DLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAK 161 (313)
Q Consensus 82 d~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~ 161 (313)
|+++++++||.|+|+|++++.+||||++++||+++|+++.+++.+++|.|.+.. ..+.+|+||+|||||+|+||+.+|+
T Consensus 79 d~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~-~~g~~l~gktvgIiG~G~IG~~vA~ 157 (526)
T PRK13581 79 DVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKK-FMGVELYGKTLGIIGLGRIGSEVAK 157 (526)
T ss_pred cHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccC-ccccccCCCEEEEECCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999997432 3578999999999999999999999
Q ss_pred HHHhcCCcEEEECCCCccc----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccC
Q 021361 162 RVEAFGCPISYHSRSEKSD----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHID 237 (313)
Q Consensus 162 ~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd 237 (313)
++++|||+|++|||+.... .+... .++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||+++|
T Consensus 158 ~l~~fG~~V~~~d~~~~~~~~~~~g~~~-~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vd 236 (526)
T PRK13581 158 RAKAFGMKVIAYDPYISPERAAQLGVEL-VSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIID 236 (526)
T ss_pred HHHhCCCEEEEECCCCChhHHHhcCCEE-EcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeC
Confidence 9999999999999864321 23333 389999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021361 238 EPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPVI 313 (313)
Q Consensus 238 ~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~ 313 (313)
++||+++|++|+++||+||||++||++++|||++|||++|||+||+|.+++.++...+++|+.+|++|+++.+.||
T Consensus 237 e~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn 312 (526)
T PRK13581 237 EAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPHLGASTAEAQENVAIQVAEQVIDALRGGPVPNAVN 312 (526)
T ss_pred HHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCeeEcCccccchHHHHHHHHHHHHHHHHHHHcCCCcCceee
Confidence 9999999999999999999999999877799999999999999999999999999999999999999999998875
No 15
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=3.6e-65 Score=477.28 Aligned_cols=277 Identities=21% Similarity=0.373 Sum_probs=253.6
Q ss_pred hhHHhccCCceEEEeeCCCCCCHHHhhcCC--CceEEEEcCCCCCcCChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHH
Q 021361 37 KFFQENSSAIRAVVGDTKCGADAELIDSLP--TLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLA 114 (313)
Q Consensus 37 ~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~--~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~ 114 (313)
++..+.++++|+++++...++++++++++| +||+|++.++|+|++|+++++++||.|+|+|++++++||||+++++|+
T Consensus 37 ~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~ 116 (330)
T PRK12480 37 SATVDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQ 116 (330)
T ss_pred HHHHHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEecccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHH
Confidence 334667899999998777789999999998 899999999999999999999999999999999999999999999999
Q ss_pred HhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccccc-ccccCCHHHHH
Q 021361 115 VLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDAN-YKYYTNIIDLA 193 (313)
Q Consensus 115 ~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~-~~~~~~l~~l~ 193 (313)
+.|++..+++.+++|.|.......+++|+|++|||||+|.||+.+|++|+++|++|++||++...... .....++++++
T Consensus 117 ~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell 196 (330)
T PRK12480 117 LVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAI 196 (330)
T ss_pred HHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHH
Confidence 99999999999999976422223478999999999999999999999999999999999998754322 23345899999
Q ss_pred hhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCC---------
Q 021361 194 SNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEV--------- 264 (313)
Q Consensus 194 ~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~--------- 264 (313)
++||+|++|+|++++|+++++++.|++||+|++|||+|||+++|++||+++|++|+++||+||||++||+.
T Consensus 197 ~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~ 276 (330)
T PRK12480 197 KDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKD 276 (330)
T ss_pred hcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999952
Q ss_pred -C----cccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021361 265 -P----EQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPVI 313 (313)
Q Consensus 265 -~----~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~ 313 (313)
+ +|||++|||++|||+|++|.++++++.+.+.+|+.+|++|++..+.||
T Consensus 277 ~~~~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~n~~~~~~~~~~~~~~~ 330 (330)
T PRK12480 277 IDDKTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAALSVINTGTCETRLN 330 (330)
T ss_pred cCchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHHHhCCCCcccCC
Confidence 1 269999999999999999999999999999999999999999999987
No 16
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=9.5e-65 Score=475.53 Aligned_cols=312 Identities=19% Similarity=0.285 Sum_probs=275.1
Q ss_pred CCceEEEEeCCCChHHHHHHHhcCcEEE-ecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCC--ceEEEEcCCC
Q 021361 1 MEKIGVLMTTPMSNYLEQELAARFTLFK-LWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPT--LEIVASYSVG 77 (313)
Q Consensus 1 m~~~~vl~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~--Lk~i~~~~~G 77 (313)
|.|++|+.+.+......+.+.+.+.+.. .+.... .++..+.++++|+++++...++++++++++|+ ||+|++.|+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~~~G 79 (332)
T PRK08605 1 MTKIKIMSVRDEDAPYIKAWAEKHHVEVDLTKEAL-TDDNVEEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAG 79 (332)
T ss_pred CcEEEEEecCHHHHHHHHHHHHhcCeEEEEecCCC-CHHHHHHhcCCCEEEEecCCCCCHHHHHhhhhcCceEEEEcccc
Confidence 7789999999888788888777665432 222222 23344667899999888778999999999997 9999999999
Q ss_pred CCcCChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHH
Q 021361 78 LDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGT 157 (313)
Q Consensus 78 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~ 157 (313)
+|++|+++++++||.|+|+|++++++||||+++++|++.|++..+++.+++|.|.......+++|+|++|||||+|.||+
T Consensus 80 ~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VgIIG~G~IG~ 159 (332)
T PRK08605 80 FDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRSIKDLKVAVIGTGRIGL 159 (332)
T ss_pred cchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccccccceeCCCEEEEECCCHHHH
Confidence 99999999999999999999999999999999999999999999999999998753222347899999999999999999
Q ss_pred HHHHHH-HhcCCcEEEECCCCccc--ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCC
Q 021361 158 AIAKRV-EAFGCPISYHSRSEKSD--ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGA 234 (313)
Q Consensus 158 ~~a~~l-~~~g~~V~~~~~~~~~~--~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~ 234 (313)
.+|++| ++||++|++||++.... .......++++++++||+|++|+|.++.|+++++++.++.||+|++|||+|||.
T Consensus 160 ~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~ 239 (332)
T PRK08605 160 AVAKIFAKGYGSDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGS 239 (332)
T ss_pred HHHHHHHhcCCCEEEEECCCccHhHHhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCc
Confidence 999999 78999999999986532 122334589999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHhCCceEEEccCCCCCCC--CCc------------ccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHH
Q 021361 235 HIDEPELVSALLEGRLAGAGLDVYENEPE--VPE------------QMLGLNNVVLLPHVGSDTEETSKAMADLVIENLV 300 (313)
Q Consensus 235 ~vd~~al~~al~~g~~~ga~lDV~~~EP~--~~~------------~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~ 300 (313)
++|+++|.++|++|+++||+||||++||+ +.+ +||++|||++|||+||+|.++.+++...+++|+.
T Consensus 240 ~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~n~~ 319 (332)
T PRK08605 240 LVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDAAVKNLIVDALDATL 319 (332)
T ss_pred ccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999983 211 4999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCCC
Q 021361 301 AHFSNKPLLTPVI 313 (313)
Q Consensus 301 ~~~~g~~~~~~v~ 313 (313)
+|++|++..+.||
T Consensus 320 ~~~~g~~~~~~~~ 332 (332)
T PRK08605 320 EVLQTGTTRLRVN 332 (332)
T ss_pred HHHcCCCCCCCcC
Confidence 9999999999886
No 17
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=4.4e-65 Score=458.73 Aligned_cols=299 Identities=26% Similarity=0.446 Sum_probs=273.8
Q ss_pred eEEEEeCCCChHHHHHHHhcCcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhh-cCCCceEEEEcCCCCCcCC
Q 021361 4 IGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELID-SLPTLEIVASYSVGLDKID 82 (313)
Q Consensus 4 ~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~-~~~~Lk~i~~~~~G~d~id 82 (313)
.+||+++++.+...+.|++.+..+.+.. +.+.+++...++++|++++++.+++++++|+ ..-+||+|.+.++|+||+|
T Consensus 7 ~~il~~e~~~~~~~~~l~~~g~~v~~~~-~~~~eel~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~dNVD 85 (406)
T KOG0068|consen 7 RKILVAESLDQACIEILKDNGYQVEFKK-NLSLEELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGVDNVD 85 (406)
T ss_pred ceEEEecccchHHHHHHHhcCceEEEec-cCCHHHHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCccccC
Confidence 3699999999999999998874443322 2233577778899999999999999999999 4557999999999999999
Q ss_pred hhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHH
Q 021361 83 LDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKR 162 (313)
Q Consensus 83 ~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~ 162 (313)
++++.++||.|.|+|.+|+.++||+++++++++.|++.+....+++|+|++..+ .|.+|+|||+||+|+|.||+.+|++
T Consensus 86 L~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~-~G~el~GKTLgvlG~GrIGseVA~r 164 (406)
T KOG0068|consen 86 LKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKY-LGWELRGKTLGVLGLGRIGSEVAVR 164 (406)
T ss_pred hhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceeecce-eeeEEeccEEEEeecccchHHHHHH
Confidence 999999999999999999999999999999999999999999999999996544 7999999999999999999999999
Q ss_pred HHhcCCcEEEECCCCccc----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCH
Q 021361 163 VEAFGCPISYHSRSEKSD----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDE 238 (313)
Q Consensus 163 l~~~g~~V~~~~~~~~~~----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~ 238 (313)
++.+||+|++||+-.... .+.+ ..+++|++..||+|.+|+|++|+|+++++.+.|++||+|..+||++||++||+
T Consensus 165 ~k~~gm~vI~~dpi~~~~~~~a~gvq-~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe 243 (406)
T KOG0068|consen 165 AKAMGMHVIGYDPITPMALAEAFGVQ-LVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDE 243 (406)
T ss_pred HHhcCceEEeecCCCchHHHHhccce-eeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceech
Confidence 999999999999865432 2233 46899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCceEEEccCCCCCCCC---CcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcC
Q 021361 239 PELVSALLEGRLAGAGLDVYENEPEV---PEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSN 305 (313)
Q Consensus 239 ~al~~al~~g~~~ga~lDV~~~EP~~---~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g 305 (313)
.||+++|++|+++|||+|||+.||+. .+.|.++|||+.|||+|++|.|+..+....+.+++..|.+|
T Consensus 244 ~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~iaievaea~~~~~~~ 313 (406)
T KOG0068|consen 244 PALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVSDYING 313 (406)
T ss_pred HHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999977 45899999999999999999999999999999999999999
No 18
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=2.1e-61 Score=448.42 Aligned_cols=292 Identities=23% Similarity=0.359 Sum_probs=248.6
Q ss_pred EEEEeCCC-ChH-HHHHHHhcCcEEEe--cCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCc
Q 021361 5 GVLMTTPM-SNY-LEQELAARFTLFKL--WTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDK 80 (313)
Q Consensus 5 ~vl~~~~~-~~~-~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~ 80 (313)
.+++..+. ..+ +.+.|++.++.++. +... ...++|+++++.. +.+.++ .|+||||++.|+|+|+
T Consensus 2 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~--------~~~~a~~~~~~~~---~~~~l~-~~~Lk~I~~~~aG~d~ 69 (312)
T PRK15469 2 DIIFYHPTFDTQWWIEALRKALPQARVRAWKSG--------DNDPADYALVWHP---PVEMLA-GRDLKAVFALGAGVDS 69 (312)
T ss_pred EEEEeCCccCHHHHHHHHHHHCCCCeEEecCCC--------CCccCeEEEEeCC---ChHHhc-cCCceEEEEcccccch
Confidence 45655544 444 66778876653332 2211 1367898888653 467776 5899999999999999
Q ss_pred CChhh-----hhcCCcEEEeCCC-CCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCCh
Q 021361 81 IDLDK-----CKDKAVRVTNTPD-VLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGR 154 (313)
Q Consensus 81 id~~~-----~~~~gI~v~n~~~-~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~ 154 (313)
+|... +.++||.|+|+++ .++.+||||+++++|++.|++..++..+++|.|... .+.+++||+|||||+|.
T Consensus 70 i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~---~~~~l~g~tvgIvG~G~ 146 (312)
T PRK15469 70 ILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPL---PEYHREDFTIGILGAGV 146 (312)
T ss_pred hhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCC---CCCCcCCCEEEEECCCH
Confidence 98322 4568999999864 689999999999999999999999999999999742 34689999999999999
Q ss_pred hHHHHHHHHHhcCCcEEEECCCCccccccc---ccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcC
Q 021361 155 IGTAIAKRVEAFGCPISYHSRSEKSDANYK---YYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIG 231 (313)
Q Consensus 155 iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~---~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~ 231 (313)
||+.+|++|++|||+|++|+++.+...+.. ...++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|
T Consensus 147 IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 147 LGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLA 226 (312)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECC
Confidence 999999999999999999998765432222 23589999999999999999999999999999999999999999999
Q ss_pred CCCccCHHHHHHHHHhCCceEEEccCCCCCCCCC-cccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 021361 232 RGAHIDEPELVSALLEGRLAGAGLDVYENEPEVP-EQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLT 310 (313)
Q Consensus 232 rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~-~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~ 310 (313)
||++||++||+++|++|++.||++|||++||+++ +|||++|||++|||+||+|.++ ++...+.+|+++|++|+++.|
T Consensus 227 RG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag~t~~~--~~~~~~~~n~~~~~~g~~~~~ 304 (312)
T PRK15469 227 RGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVTRPA--EAVEYISRTIAQLEKGERVCG 304 (312)
T ss_pred CccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCCCcCHH--HHHHHHHHHHHHHHcCCCCcc
Confidence 9999999999999999999999999999999875 5899999999999999999874 688999999999999999999
Q ss_pred CCC
Q 021361 311 PVI 313 (313)
Q Consensus 311 ~v~ 313 (313)
.|+
T Consensus 305 ~V~ 307 (312)
T PRK15469 305 QVD 307 (312)
T ss_pred cCC
Confidence 875
No 19
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-60 Score=441.27 Aligned_cols=286 Identities=26% Similarity=0.359 Sum_probs=244.4
Q ss_pred EEEEeCCCChHHHHHHHhcCcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcCChh
Q 021361 5 GVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKIDLD 84 (313)
Q Consensus 5 ~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~ 84 (313)
.+++..++.+...+.+.+.++.......+ ...++|+++.... +..+|+||||++.++|+|++|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~a~~~~~~~~-------~~~~~~Lk~I~~~~aG~D~id~~ 66 (303)
T PRK06436 2 NVYVNFPMSKKLLEICRDILDLDDVHWYP--------DYYDAEAILIKGR-------YVPGKKTKMIQSLSAGVDHIDVS 66 (303)
T ss_pred eEEEEccCCHHHHHHHHhhcccceeEecc--------ccCCCCEEEecCC-------cCCCCCeEEEEECCcccCcccHH
Confidence 45666888888888776544321111111 1356777765332 23468999999999999999999
Q ss_pred hhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHH
Q 021361 85 KCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVE 164 (313)
Q Consensus 85 ~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~ 164 (313)
++.++||.++|. +.++.+||||+++++|++.|++.++++.+++|.|... .+++|+||+|||||+|+||+.+|++++
T Consensus 67 ~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~---~~~~L~gktvgIiG~G~IG~~vA~~l~ 142 (303)
T PRK06436 67 GIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQS---PTKLLYNKSLGILGYGGIGRRVALLAK 142 (303)
T ss_pred HHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCC---CCCCCCCCEEEEECcCHHHHHHHHHHH
Confidence 999888887775 7889999999999999999999999999999999742 357999999999999999999999999
Q ss_pred hcCCcEEEECCCCccccccc-ccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHH
Q 021361 165 AFGCPISYHSRSEKSDANYK-YYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVS 243 (313)
Q Consensus 165 ~~g~~V~~~~~~~~~~~~~~-~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~ 243 (313)
+|||+|++|||+.... +.. ...++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||+++|+++|.+
T Consensus 143 afG~~V~~~~r~~~~~-~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~ 221 (303)
T PRK06436 143 AFGMNIYAYTRSYVND-GISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLN 221 (303)
T ss_pred HCCCEEEEECCCCccc-CcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHH
Confidence 9999999999975432 222 25689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCC-CCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021361 244 ALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVG-SDTEETSKAMADLVIENLVAHFSNKPLLTPVI 313 (313)
Q Consensus 244 al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia-~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~ 313 (313)
+|++|++.||++|||++||++++. .+|||++|||++ ++|.++.+++...+++|+.+|++|++ .|.|+
T Consensus 222 aL~~g~i~~a~lDV~~~EP~~~~~--~~~nviiTPHi~g~~t~e~~~~~~~~~~~ni~~~~~g~~-~~~V~ 289 (303)
T PRK06436 222 FLRNHNDKYYLSDVWWNEPIITET--NPDNVILSPHVAGGMSGEIMQPAVALAFENIKNFFEGKP-KNIVR 289 (303)
T ss_pred HHHcCCceEEEEccCCCCCCCccC--CCCCEEECCccccccCHHHHHHHHHHHHHHHHHHHcCCC-CceEc
Confidence 999999999999999999976543 689999999986 48899999999999999999999987 56653
No 20
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=2.4e-60 Score=448.68 Aligned_cols=277 Identities=22% Similarity=0.338 Sum_probs=240.5
Q ss_pred eEEEEeCCCChHHHHHHHhcCcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcCCh
Q 021361 4 IGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKIDL 83 (313)
Q Consensus 4 ~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~ 83 (313)
|+|++.+.+ +...+.|++.+++......+.. .+.++++|++++++.+++++++++ .|+||||+++++|+||+|+
T Consensus 1 mkIl~d~~~-~~~~~~~~~~~ev~~~~~~~~~----~~~l~daD~liv~s~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD~ 74 (378)
T PRK15438 1 MKILVDENM-PYARELFSRLGEVKAVPGRPIP----VAQLADADALMVRSVTKVNESLLA-GKPIKFVGTATAGTDHVDE 74 (378)
T ss_pred CEEEEeCCc-chHHHHHhhcCcEEEeCCCCCC----HHHhCCCcEEEEcCCCCCCHHHhc-CCCCeEEEECcccccccCH
Confidence 368887655 4555666655565543222222 234688999999887899999996 6999999999999999999
Q ss_pred hhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHH
Q 021361 84 DKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRV 163 (313)
Q Consensus 84 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l 163 (313)
+++.++||.|+|+||+++.+||||+++++|++.|+. +.+|+||+|||||+|+||+.+|++|
T Consensus 75 ~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~-------------------g~~L~gktvGIIG~G~IG~~vA~~l 135 (378)
T PRK15438 75 AWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD-------------------GFSLHDRTVGIVGVGNVGRRLQARL 135 (378)
T ss_pred HHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccC-------------------CCCcCCCEEEEECcCHHHHHHHHHH
Confidence 999999999999999999999999999999998851 3479999999999999999999999
Q ss_pred HhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChH----hhhccCHHHHhhcCCCcEEEEcCCCCccCHH
Q 021361 164 EAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEE----THHIVNRKVIDALGPSGILINIGRGAHIDEP 239 (313)
Q Consensus 164 ~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~----t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~ 239 (313)
++|||+|.+|||..........+.++++++++||+|++|+|+|++ |.++++++.|++||+|++|||+|||++||++
T Consensus 136 ~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~ 215 (378)
T PRK15438 136 EALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNT 215 (378)
T ss_pred HHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHH
Confidence 999999999998543221112356899999999999999999996 9999999999999999999999999999999
Q ss_pred HHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 021361 240 ELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKP 307 (313)
Q Consensus 240 al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~ 307 (313)
||+++|++|++.||+||||++||.++.+|+..++ ++||||||+|.++..++...+.+|+.+|+ |.+
T Consensus 216 AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~-~~~ 281 (378)
T PRK15438 216 ALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVD-IGTPHIAGYTLEGKARGTTQVFEAYSKFI-GHE 281 (378)
T ss_pred HHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCC-EECCccCcCcHHHHHHHHHHHHHHHHHHH-cCc
Confidence 9999999999999999999999987778988776 99999999999999999999999999999 544
No 21
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=100.00 E-value=2.4e-60 Score=437.16 Aligned_cols=267 Identities=50% Similarity=0.855 Sum_probs=244.6
Q ss_pred eEEEeeCCCCCCHHHhhcC-CCceEEEEcCCCCCcCChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHH
Q 021361 47 RAVVGDTKCGADAELIDSL-PTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEF 125 (313)
Q Consensus 47 ~~i~~~~~~~~~~~~l~~~-~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~ 125 (313)
.++.+......+.+++.+. |+||+|+++|+|+||+|+++|++|||+|+|+|+.+.++|||++++++|.+.|++..++++
T Consensus 63 ~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~ 142 (336)
T KOG0069|consen 63 IAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGNEM 142 (336)
T ss_pred eeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 3444445667778888775 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCc-CCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc-ccc---ccCCHHHHHhhCCeeE
Q 021361 126 VKSGKWK-NGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA-NYK---YYTNIIDLASNCQILI 200 (313)
Q Consensus 126 ~~~~~w~-~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-~~~---~~~~l~~l~~~aDvv~ 200 (313)
+++|.|. ...++.|..+.||+|||+|+|+||+.+|++|++||+.+.|++|+..... ..+ ...++++++++||+|+
T Consensus 143 ~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~iv 222 (336)
T KOG0069|consen 143 VRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIV 222 (336)
T ss_pred hhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEE
Confidence 9999994 2335568899999999999999999999999999988999999775432 112 2469999999999999
Q ss_pred EecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCC
Q 021361 201 VACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHV 280 (313)
Q Consensus 201 l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHi 280 (313)
+|+|+|++|++++|++.|.+||+|+++||+|||+++|++++.++|++|++.+|++|||++||..+++|+.++|+++||||
T Consensus 223 v~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~dnvv~~PHi 302 (336)
T KOG0069|consen 223 VNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTLDNVVILPHI 302 (336)
T ss_pred EecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCCCCCcchhcccceeEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999767899999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021361 281 GSDTEETSKAMADLVIENLVAHFSNKPLLTPVI 313 (313)
Q Consensus 281 a~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~ 313 (313)
|+.|.+++++|...++.|+.+++.|+|+.++++
T Consensus 303 gs~t~~t~~~m~~~v~~n~~~~~~g~~~~~~~~ 335 (336)
T KOG0069|consen 303 GSATLETREKMAEIVLNNLLAFFSGKPLLTPVL 335 (336)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHccCCCCCcCC
Confidence 999999999999999999999999999988764
No 22
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=1.5e-59 Score=444.64 Aligned_cols=279 Identities=20% Similarity=0.375 Sum_probs=242.3
Q ss_pred eEEEEeCCCChHHHHHHHhcCcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcCCh
Q 021361 4 IGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKIDL 83 (313)
Q Consensus 4 ~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~ 83 (313)
|+|++.+.+ |...+.+++..++... ... +...+.++++|++++++.+++++++++. |+||||+++++|+||+|+
T Consensus 1 mkI~~d~~~-p~~~~~~~~~~~v~~~-~~~---~~~~~~l~daD~liv~~~t~v~~~ll~~-~~Lk~I~~~~~G~D~iD~ 74 (381)
T PRK00257 1 MKIVADENI-PLLDAFFAGFGEIRRL-PGR---AFDRAAVRDADVLLVRSVTRVDRALLEG-SRVRFVGTCTIGTDHLDL 74 (381)
T ss_pred CEEEEecCc-hhHHHHHhhCCcEEEc-CCc---ccCHHHhCCceEEEEeCCCCCCHHHhcC-CCCeEEEECCccccccCH
Confidence 577776655 4444445544444332 211 1223456899999988888999999984 899999999999999999
Q ss_pred hhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHH
Q 021361 84 DKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRV 163 (313)
Q Consensus 84 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l 163 (313)
+++.++||.|+|+||+++.+||||+++++|++.|+ .+.+|+||+|||||+|+||+.+|+++
T Consensus 75 ~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~-------------------~g~~l~gktvGIIG~G~IG~~va~~l 135 (381)
T PRK00257 75 DYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER-------------------EGVDLAERTYGVVGAGHVGGRLVRVL 135 (381)
T ss_pred HHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc-------------------cCCCcCcCEEEEECCCHHHHHHHHHH
Confidence 99999999999999999999999999999999874 24579999999999999999999999
Q ss_pred HhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCCh----HhhhccCHHHHhhcCCCcEEEEcCCCCccCHH
Q 021361 164 EAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTE----ETHHIVNRKVIDALGPSGILINIGRGAHIDEP 239 (313)
Q Consensus 164 ~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~----~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~ 239 (313)
++|||+|++||+......+...+.++++++++||+|++|+|+|+ .|+++|+++.|++||+|++|||+|||++||++
T Consensus 136 ~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~ 215 (381)
T PRK00257 136 RGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQ 215 (381)
T ss_pred HHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHH
Confidence 99999999999865432222335689999999999999999999 59999999999999999999999999999999
Q ss_pred HHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 021361 240 ELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPL 308 (313)
Q Consensus 240 al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~ 308 (313)
||+++|++|++.+|+||||++||.++++||.. |+++|||+||+|.++..++...+.+|+.+|+.+.+.
T Consensus 216 AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~-nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~~~ 283 (381)
T PRK00257 216 ALREALLSGEDLDAVLDVWEGEPQIDLELADL-CTIATPHIAGYSLDGKARGTAQIYQALCRFFGIPAR 283 (381)
T ss_pred HHHHHHHhCCCcEEEEeCCCCCCCCChhhhhC-CEEEcCccccCCHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 99999999999999999999999777789986 999999999999999999999999999999998753
No 23
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=100.00 E-value=3.9e-48 Score=333.09 Aligned_cols=173 Identities=37% Similarity=0.657 Sum_probs=152.1
Q ss_pred HHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc----ccc
Q 021361 109 VGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA----NYK 184 (313)
Q Consensus 109 l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----~~~ 184 (313)
++++|++.|++..+++.++++.|.......+++++|++|||||+|.||+.+|+++++|||+|++|||+.+... ...
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~ 80 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEWASRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV 80 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBHHHHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE
T ss_pred ChHHHHHHhCHHHHHHHHHcCCCCCCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc
Confidence 6899999999999999999999932223457899999999999999999999999999999999999987543 112
Q ss_pred ccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCC
Q 021361 185 YYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEV 264 (313)
Q Consensus 185 ~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~ 264 (313)
...++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|++.||++|||++||++
T Consensus 81 ~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~ 160 (178)
T PF02826_consen 81 EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEPLP 160 (178)
T ss_dssp EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSSS
T ss_pred eeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCCCC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred Cc-ccCCCCcEEEcCCCC
Q 021361 265 PE-QMLGLNNVVLLPHVG 281 (313)
Q Consensus 265 ~~-~l~~~pnvi~TPHia 281 (313)
+. |||++||+++|||+|
T Consensus 161 ~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 161 ADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp TTHHHHTSTTEEEESS-T
T ss_pred CCChHHcCCCEEEeCccC
Confidence 65 999999999999987
No 24
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=99.97 E-value=5.1e-32 Score=247.23 Aligned_cols=254 Identities=22% Similarity=0.365 Sum_probs=227.8
Q ss_pred EEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcCChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHc
Q 021361 49 VVGDTKCGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKS 128 (313)
Q Consensus 49 i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~ 128 (313)
-+.+.+..++++-+++++.||++.+.+.|+|++|+.++.+.||.|||.|+...+.+|+-++.++|.++|+..+..+..++
T Consensus 77 am~yh~i~l~reDlEkfkalRv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l~rrntw~cq~l~e 156 (435)
T KOG0067|consen 77 AMMYHTITLPREDLEKFKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRNTWLCQALRE 156 (435)
T ss_pred cceeeecccchhhHHHhhhhceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhhhcccchhhhhhcc
Confidence 44456678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCcc------cccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc----cccccccCCHHHHHhhCCe
Q 021361 129 GKWKNGHFE------LGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS----DANYKYYTNIIDLASNCQI 198 (313)
Q Consensus 129 ~~w~~~~~~------~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~----~~~~~~~~~l~~l~~~aDv 198 (313)
|.|.+.... .....+|.+.|++|+|..|+.++.++++||+.|+.||+.... ..+.....++++++.++|.
T Consensus 157 g~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g~~~~lg~~rVytlqd~~~~sd~ 236 (435)
T KOG0067|consen 157 GTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDGIDKSLGLQRVYTLQDLLYQSDC 236 (435)
T ss_pred cceeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchhhhhhhhhcccceecccchhhhhccc
Confidence 998642211 134679999999999999999999999999999999997643 2445556679999999999
Q ss_pred eEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCC--CCcccCCCCcEEE
Q 021361 199 LIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPE--VPEQMLGLNNVVL 276 (313)
Q Consensus 199 v~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~--~~~~l~~~pnvi~ 276 (313)
+++|+.+++++.++|+.-..++|+.|++++|++||.++|+++|.++|++|++.+++ |. ...||.+-||.++
T Consensus 237 ~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa-------~~~~~~~~l~d~pn~ic 309 (435)
T KOG0067|consen 237 VSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA-------PRSFKQGPLKDAPNLIC 309 (435)
T ss_pred eeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc-------CcccccccccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999887 32 2347999999999
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 021361 277 LPHVGSDTEETSKAMADLVIENLVAHFSNKPLL 309 (313)
Q Consensus 277 TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~ 309 (313)
|||.++++..+..++.+.+...+++-..|.-+.
T Consensus 310 ~~~ta~~~e~~~~e~re~aa~eiR~ai~g~ip~ 342 (435)
T KOG0067|consen 310 TPHTAWYSEAASVELREVAALEIRRAITGRIPD 342 (435)
T ss_pred CcccchhhHHHHHHHHHHHhhhhhhccCCCCch
Confidence 999999999999999999999999988887543
No 25
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=99.90 E-value=5e-23 Score=168.68 Aligned_cols=101 Identities=25% Similarity=0.410 Sum_probs=86.5
Q ss_pred EEEeCCCChHHHHHHHhcCcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcCChhh
Q 021361 6 VLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKIDLDK 85 (313)
Q Consensus 6 vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~ 85 (313)
||++++++++.++.|++.+++.. .. ....+++.+.++++|+++++..+++++++++++|+||||++.|+|+|++|+++
T Consensus 1 ili~~~~~~~~~~~l~~~~~v~~-~~-~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~ 78 (133)
T PF00389_consen 1 ILITDPLPDEEIERLEEGFEVEF-CD-SPSEEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNIDLEA 78 (133)
T ss_dssp EEESSS-SHHHHHHHHHTSEEEE-ES-SSSHHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB-HHH
T ss_pred eEEeccCCHHHHHHHHCCceEEE-eC-CCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCcccHHH
Confidence 78999999999999999775443 33 33456677788999999998877799999999999999999999999999999
Q ss_pred hhcCCcEEEeCCCCCcHHHHHHH
Q 021361 86 CKDKAVRVTNTPDVLTDDVADLA 108 (313)
Q Consensus 86 ~~~~gI~v~n~~~~~~~~vAE~~ 108 (313)
++++||.|+|+||+++.+||||+
T Consensus 79 a~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 79 AKERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp HHHTTSEEEE-TTTTHHHHHHHH
T ss_pred HhhCeEEEEEeCCcCCcchhccc
Confidence 99999999999999999999999
No 26
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.86 E-value=2.6e-21 Score=186.48 Aligned_cols=167 Identities=19% Similarity=0.323 Sum_probs=137.3
Q ss_pred EcCCCCCcC-ChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEc
Q 021361 73 SYSVGLDKI-DLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVG 151 (313)
Q Consensus 73 ~~~~G~d~i-d~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG 151 (313)
-+++|+..+ .++.....+|+|+|+++.+..+++|+++++++++..++ +|.+ +..+.||+++|+|
T Consensus 197 eTttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~------~R~~---------~~~LaGKtVgVIG 261 (476)
T PTZ00075 197 ETTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLIDGI------FRAT---------DVMIAGKTVVVCG 261 (476)
T ss_pred cchHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHHHHH------HHhc---------CCCcCCCEEEEEC
Confidence 368888776 22333446899999999999999999999999988443 3333 3469999999999
Q ss_pred CChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcE
Q 021361 152 LGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGI 226 (313)
Q Consensus 152 ~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~ 226 (313)
+|.||+.+|+++++||++|+++++.+... .++. ..++++++++||+|++|+ .+.++|+++.|+.||+|++
T Consensus 262 ~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~-~~~leell~~ADIVI~at----Gt~~iI~~e~~~~MKpGAi 336 (476)
T PTZ00075 262 YGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQ-VVTLEDVVETADIFVTAT----GNKDIITLEHMRRMKNNAI 336 (476)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCce-eccHHHHHhcCCEEEECC----CcccccCHHHHhccCCCcE
Confidence 99999999999999999999997765432 2332 357999999999999985 4788999999999999999
Q ss_pred EEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCc
Q 021361 227 LINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPE 266 (313)
Q Consensus 227 ~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~ 266 (313)
+||+||+ |++.+.++|+++. ++||++.||....
T Consensus 337 LINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~~ 369 (476)
T PTZ00075 337 VGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVDR 369 (476)
T ss_pred EEEcCCC---chHHhHHHHHhcC----CceeecccCCCCe
Confidence 9999999 7888889988754 6899999996543
No 27
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.82 E-value=3.6e-20 Score=170.52 Aligned_cols=176 Identities=17% Similarity=0.226 Sum_probs=139.0
Q ss_pred ccCCceEEEee----------------CCCCCCHHHhhcCCCceEEEEcCCCCCcCChh-hhhcCCcEEE------eCCC
Q 021361 42 NSSAIRAVVGD----------------TKCGADAELIDSLPTLEIVASYSVGLDKIDLD-KCKDKAVRVT------NTPD 98 (313)
Q Consensus 42 ~~~~~~~i~~~----------------~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~-~~~~~gI~v~------n~~~ 98 (313)
.++++|++++. ...++++++++.+| .++...+|+++.|++ +++++||.|+ |.+.
T Consensus 51 ~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~---~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~ 127 (287)
T TIGR02853 51 DLTTLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTK---GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAI 127 (287)
T ss_pred hhccCCEEEECCccccCCceEecccccCCccccHHHHHhcC---CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEE
Confidence 35677877762 23456789999988 366778889999888 9999999999 8888
Q ss_pred CCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361 99 VLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK 178 (313)
Q Consensus 99 ~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~ 178 (313)
+|+.++||.++.+++.. .+.+++|++++|+|+|.||+.+|+.|+++|++|++++|+.+
T Consensus 128 ~n~~~~Ae~ai~~al~~----------------------~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~ 185 (287)
T TIGR02853 128 YNSIPTAEGAIMMAIEH----------------------TDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA 185 (287)
T ss_pred EccHhHHHHHHHHHHHh----------------------cCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 99999999999877742 12368899999999999999999999999999999999875
Q ss_pred cc-----cccc--ccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCC-ccCHHHHHHHHHhCCc
Q 021361 179 SD-----ANYK--YYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGA-HIDEPELVSALLEGRL 250 (313)
Q Consensus 179 ~~-----~~~~--~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~-~vd~~al~~al~~g~~ 250 (313)
.. .+.. ...+++++++++|+|++|+|.+ +++++.++.|++++++||++..+ -+|. ++.++..+
T Consensus 186 ~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~-----ii~~~~l~~~k~~aliIDlas~Pg~tdf----~~Ak~~G~ 256 (287)
T TIGR02853 186 DLARITEMGLIPFPLNKLEEKVAEIDIVINTIPAL-----VLTADVLSKLPKHAVIIDLASKPGGTDF----EYAKKRGI 256 (287)
T ss_pred HHHHHHHCCCeeecHHHHHHHhccCCEEEECCChH-----HhCHHHHhcCCCCeEEEEeCcCCCCCCH----HHHHHCCC
Confidence 32 1221 1245778899999999999863 67888999999999999999743 3444 33444444
Q ss_pred e
Q 021361 251 A 251 (313)
Q Consensus 251 ~ 251 (313)
.
T Consensus 257 ~ 257 (287)
T TIGR02853 257 K 257 (287)
T ss_pred E
Confidence 4
No 28
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.65 E-value=2.1e-15 Score=139.68 Aligned_cols=163 Identities=13% Similarity=0.251 Sum_probs=128.9
Q ss_pred hccCCceEEEeeCC----------------CCCCHHHhhcCCCceEEEEcCCCCCcCChhhhhcCCcEEEeCCCC-----
Q 021361 41 ENSSAIRAVVGDTK----------------CGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDV----- 99 (313)
Q Consensus 41 ~~~~~~~~i~~~~~----------------~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~----- 99 (313)
+.++++|+++..-. ..++++.++.+|++..+. .|.+.++++ +.+.++||.+.+..+.
T Consensus 51 ~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~ 128 (296)
T PRK08306 51 EALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAI 128 (296)
T ss_pred HHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhh
Confidence 44678999987411 124688999999997555 588899987 7889999999998764
Q ss_pred -CcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361 100 -LTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK 178 (313)
Q Consensus 100 -~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~ 178 (313)
++.++||.++.+++.. .+..++|++++|||+|.+|+.+++.|+++|++|++++|++.
T Consensus 129 ~ns~~~aegav~~a~~~----------------------~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~ 186 (296)
T PRK08306 129 LNSIPTAEGAIMMAIEH----------------------TPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA 186 (296)
T ss_pred hccHhHHHHHHHHHHHh----------------------CCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 7889999977754321 12357899999999999999999999999999999999865
Q ss_pred cc-----ccccc--cCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCC
Q 021361 179 SD-----ANYKY--YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGR 232 (313)
Q Consensus 179 ~~-----~~~~~--~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~r 232 (313)
.. .++.. ..++.+.++++|+|+.++|. .+++++.++.|++++++||++.
T Consensus 187 ~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 187 HLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-----LVLTKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred HHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-----hhhhHHHHHcCCCCcEEEEEcc
Confidence 32 22221 24677889999999999874 4678889999999999999985
No 29
>PLN02494 adenosylhomocysteinase
Probab=99.60 E-value=2.3e-15 Score=145.15 Aligned_cols=116 Identities=19% Similarity=0.273 Sum_probs=101.0
Q ss_pred ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCH
Q 021361 141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNR 215 (313)
Q Consensus 141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~ 215 (313)
.+.|++++|+|+|.||+.+|++++++|++|+++++.+... .++. ..+++++++++|+|+.+ ..++++++.
T Consensus 251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~-vv~leEal~~ADVVI~t----TGt~~vI~~ 325 (477)
T PLN02494 251 MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQ-VLTLEDVVSEADIFVTT----TGNKDIIMV 325 (477)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCe-eccHHHHHhhCCEEEEC----CCCccchHH
Confidence 4789999999999999999999999999999998876432 2233 24789999999999973 367889999
Q ss_pred HHHhhcCCCcEEEEcCC-CCccCHHHHHHH--HHhCCceEEEccCCCCCC
Q 021361 216 KVIDALGPSGILINIGR-GAHIDEPELVSA--LLEGRLAGAGLDVYENEP 262 (313)
Q Consensus 216 ~~l~~mk~ga~~in~~r-g~~vd~~al~~a--l~~g~~~ga~lDV~~~EP 262 (313)
+.|+.||+|++++|+|| +..||+++|.++ ++++.+. +.+|+|+.|-
T Consensus 326 e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d 374 (477)
T PLN02494 326 DHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD 374 (477)
T ss_pred HHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence 99999999999999999 689999999998 8999988 9999998764
No 30
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.51 E-value=3.9e-14 Score=130.58 Aligned_cols=88 Identities=20% Similarity=0.335 Sum_probs=75.6
Q ss_pred cccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccC
Q 021361 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVN 214 (313)
Q Consensus 140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~ 214 (313)
..|+||+|||||+|+||+++|++|+.+|++|+++++..... .+.. ..++++++++||+|++|+|+ ++++++++
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~-v~sl~Eaak~ADVV~llLPd-~~t~~V~~ 89 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFE-VMSVSEAVRTAQVVQMLLPD-EQQAHVYK 89 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCE-ECCHHHHHhcCCEEEEeCCC-hHHHHHHH
Confidence 46899999999999999999999999999999997654331 1333 34899999999999999997 67799999
Q ss_pred HHHHhhcCCCcEEEE
Q 021361 215 RKVIDALGPSGILIN 229 (313)
Q Consensus 215 ~~~l~~mk~ga~~in 229 (313)
.+.++.||+|++++-
T Consensus 90 ~eil~~MK~GaiL~f 104 (335)
T PRK13403 90 AEVEENLREGQMLLF 104 (335)
T ss_pred HHHHhcCCCCCEEEE
Confidence 999999999998764
No 31
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=99.51 E-value=5.4e-14 Score=134.48 Aligned_cols=115 Identities=22% Similarity=0.306 Sum_probs=98.7
Q ss_pred ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCH
Q 021361 141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNR 215 (313)
Q Consensus 141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~ 215 (313)
.+.|++|+|+|+|.||+.+|++++++|++|+++++.+... .++. ..+++++++.+|+|+.++ .+.++++.
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~-v~~leeal~~aDVVItaT----G~~~vI~~ 266 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFR-VMTMEEAAKIGDIFITAT----GNKDVIRG 266 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCE-eCCHHHHHhcCCEEEECC----CCHHHHHH
Confidence 4789999999999999999999999999999998776432 2332 346788999999998765 45778899
Q ss_pred HHHhhcCCCcEEEEcCCCCc-cCHHHHHHHHHhCCceEEEccCCCC
Q 021361 216 KVIDALGPSGILINIGRGAH-IDEPELVSALLEGRLAGAGLDVYEN 260 (313)
Q Consensus 216 ~~l~~mk~ga~~in~~rg~~-vd~~al~~al~~g~~~ga~lDV~~~ 260 (313)
+.|..||+|++++|+||+++ +|.++|.+++.+.+..+..+|+|.-
T Consensus 267 ~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~ 312 (406)
T TIGR00936 267 EHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL 312 (406)
T ss_pred HHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence 99999999999999999998 9999999998887777788998764
No 32
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.49 E-value=2.5e-13 Score=123.97 Aligned_cols=118 Identities=18% Similarity=0.267 Sum_probs=103.7
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc------ccccccCCHHHHHhhCCeeEEecCCChHhhhccC--HH
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD------ANYKYYTNIIDLASNCQILIVACSLTEETHHIVN--RK 216 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~--~~ 216 (313)
.+|||||+|.||..||++|...|+.|.+|||++.+. .+.....+..++.+++|+|++|+|.+++.+..+. ..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 379999999999999999999999999999998762 3566678899999999999999999999999774 57
Q ss_pred HHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCC
Q 021361 217 VIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEP 262 (313)
Q Consensus 217 ~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP 262 (313)
.++.+|+|++|||++..++.....+.+.++++.+...---|....+
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~ 126 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVP 126 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCch
Confidence 8999999999999999999999999999999998844333566655
No 33
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.48 E-value=8e-14 Score=118.10 Aligned_cols=111 Identities=19% Similarity=0.348 Sum_probs=89.7
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccC-HHHH
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVN-RKVI 218 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~-~~~l 218 (313)
++|||||+|.||+.+|++|...|++|++|||++++. .+...+.++.|++++||+|++++|..+.++.++. .+.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~ 81 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL 81 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence 589999999999999999999999999999987543 3456678999999999999999999888887653 2377
Q ss_pred hhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccC
Q 021361 219 DALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDV 257 (313)
Q Consensus 219 ~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV 257 (313)
+.+++|.++||++...+-....+.+.+.+..+. .+|.
T Consensus 82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vda 118 (163)
T PF03446_consen 82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVR--YVDA 118 (163)
T ss_dssp GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE--EEEE
T ss_pred hccccceEEEecCCcchhhhhhhhhhhhhccce--eeee
Confidence 889999999999999999999999999887766 5554
No 34
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=99.38 E-value=1.2e-12 Score=125.99 Aligned_cols=152 Identities=19% Similarity=0.294 Sum_probs=113.8
Q ss_pred EEcCCCCCcC-ChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEE
Q 021361 72 ASYSVGLDKI-DLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIV 150 (313)
Q Consensus 72 ~~~~~G~d~i-d~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgii 150 (313)
=-+++|+..+ ......+.+++|.|++..+.....|...+.--+....+.+ . .+..+.|++|+|+
T Consensus 154 EeTttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai~r------a---------t~~~l~Gk~VlVi 218 (425)
T PRK05476 154 EETTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTGESLLDGIKR------A---------TNVLIAGKVVVVA 218 (425)
T ss_pred ecchHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHHhhhHHHHHH------h---------ccCCCCCCEEEEE
Confidence 3468888776 3333345789999999988877666444433332222110 0 1234789999999
Q ss_pred cCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCc
Q 021361 151 GLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSG 225 (313)
Q Consensus 151 G~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga 225 (313)
|+|.||+.+|+.++++|++|+++++.+... .++. ..+++++++.+|+|+.++ .+.++|+.+.|+.||+|+
T Consensus 219 G~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~-v~~l~eal~~aDVVI~aT----G~~~vI~~~~~~~mK~Ga 293 (425)
T PRK05476 219 GYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFR-VMTMEEAAELGDIFVTAT----GNKDVITAEHMEAMKDGA 293 (425)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCE-ecCHHHHHhCCCEEEECC----CCHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999877542 2233 347899999999998865 456789999999999999
Q ss_pred EEEEcCCCCc-cCHHHHHH
Q 021361 226 ILINIGRGAH-IDEPELVS 243 (313)
Q Consensus 226 ~~in~~rg~~-vd~~al~~ 243 (313)
+++|+|+... +|.++|.+
T Consensus 294 iliNvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 294 ILANIGHFDNEIDVAALEE 312 (425)
T ss_pred EEEEcCCCCCccChHHHhh
Confidence 9999999876 78887765
No 35
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.34 E-value=5.1e-12 Score=116.77 Aligned_cols=106 Identities=13% Similarity=0.285 Sum_probs=90.3
Q ss_pred EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhcc-C-HHHH
Q 021361 146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIV-N-RKVI 218 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i-~-~~~l 218 (313)
+|||||+|.||..+|+.|...|++|.+|||+++.. .+.....+..+++++||+|++|+|.++.++.++ . ...+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 48999999999999999999999999999987542 233345688899999999999999888887765 3 3467
Q ss_pred hhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361 219 DALGPSGILINIGRGAHIDEPELVSALLEGRLA 251 (313)
Q Consensus 219 ~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ 251 (313)
..+++|.++||+++..+.+.+++.+.+++..+.
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~ 113 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGID 113 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 788999999999999999999999999987665
No 36
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.32 E-value=7.4e-12 Score=115.86 Aligned_cols=118 Identities=19% Similarity=0.332 Sum_probs=96.7
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccC--HHH
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVN--RKV 217 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~--~~~ 217 (313)
++|||||+|.||+.+|+.|...|++|.+|||++... .+.....++++++++||+|++++|.+..++.++. .+.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 479999999999999999999999999999987542 2333456899999999999999998888887763 346
Q ss_pred HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCC
Q 021361 218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEP 262 (313)
Q Consensus 218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP 262 (313)
++.+++|.++||+++..+...+++.+.+.+..+...---|+..+|
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~ 127 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP 127 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence 788999999999999999888899999988766544344555544
No 37
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.29 E-value=1.3e-11 Score=114.42 Aligned_cols=111 Identities=13% Similarity=0.249 Sum_probs=94.6
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccC--HHH
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVN--RKV 217 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~--~~~ 217 (313)
++|||||+|.||..+|+.|...|++|.+|||++++. .+.....+..+++++||+|++|+|.....+..+. ...
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 379999999999999999999999999999987643 2344567889999999999999998877777664 346
Q ss_pred HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccC
Q 021361 218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDV 257 (313)
Q Consensus 218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV 257 (313)
+..+++|.++||++++.+...+.+.+.+.+..+. .+|.
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~--~lda 119 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS--MMDV 119 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEc
Confidence 7789999999999999999999999999998877 4553
No 38
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.28 E-value=2.3e-11 Score=112.97 Aligned_cols=108 Identities=19% Similarity=0.315 Sum_probs=92.8
Q ss_pred EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhh---CCeeEEecCCChHhhhccCHHH
Q 021361 146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASN---CQILIVACSLTEETHHIVNRKV 217 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~---aDvv~l~~p~~~~t~~~i~~~~ 217 (313)
+|||||+|.||..+|+.|...|++|.+|||+++.. .+.....++++++++ +|+|++++|..+.++.+++ +.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~-~i 80 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIK-DL 80 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHH-HH
Confidence 69999999999999999999999999999986542 234456789999877 6999999998878888774 57
Q ss_pred HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEcc
Q 021361 218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLD 256 (313)
Q Consensus 218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lD 256 (313)
+..+++|.++||++++.+.+...+.+.+.+..+. .+|
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd 117 (299)
T PRK12490 81 YPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD 117 (299)
T ss_pred hccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence 7889999999999999999999999999888765 466
No 39
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.28 E-value=2.3e-11 Score=119.35 Aligned_cols=116 Identities=17% Similarity=0.253 Sum_probs=100.6
Q ss_pred EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc---------ccc---ccCCHHHHHhh---CCeeEEecCCChHhh
Q 021361 146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA---------NYK---YYTNIIDLASN---CQILIVACSLTEETH 210 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~---------~~~---~~~~l~~l~~~---aDvv~l~~p~~~~t~ 210 (313)
+|||||+|.||+.||+.|...|++|.+|||++++.. +.. .+.+++++++. +|+|++|+|..+.++
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~ 87 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVD 87 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHH
Confidence 699999999999999999999999999999875421 222 45689999886 999999999999999
Q ss_pred hccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCC
Q 021361 211 HIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEP 262 (313)
Q Consensus 211 ~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP 262 (313)
.++ ...+..+++|.++||+|....-+...+.+.+++..+.....=|+..++
T Consensus 88 ~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~ 138 (493)
T PLN02350 88 QTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE 138 (493)
T ss_pred HHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence 888 468889999999999999999999999999999988866666776666
No 40
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=99.28 E-value=1.3e-11 Score=103.43 Aligned_cols=99 Identities=18% Similarity=0.361 Sum_probs=72.4
Q ss_pred cccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccC
Q 021361 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVN 214 (313)
Q Consensus 140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~ 214 (313)
..+.||++.|+|||.+|+.+|+.|+++|++|.+++..+-.. .+++ ..+++++++++|+++.++ ..+.++.
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~-v~~~~~a~~~adi~vtaT----G~~~vi~ 93 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFE-VMTLEEALRDADIFVTAT----GNKDVIT 93 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-E-EE-HHHHTTT-SEEEE-S----SSSSSB-
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcE-ecCHHHHHhhCCEEEECC----CCccccC
Confidence 35899999999999999999999999999999999877542 3444 357999999999999876 4477889
Q ss_pred HHHHhhcCCCcEEEEcCCCCc-cCHHHHHH
Q 021361 215 RKVIDALGPSGILINIGRGAH-IDEPELVS 243 (313)
Q Consensus 215 ~~~l~~mk~ga~~in~~rg~~-vd~~al~~ 243 (313)
.+.|.+||+|+++.|++.-.. +|.+.|.+
T Consensus 94 ~e~~~~mkdgail~n~Gh~d~Eid~~~L~~ 123 (162)
T PF00670_consen 94 GEHFRQMKDGAILANAGHFDVEIDVDALEA 123 (162)
T ss_dssp HHHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred HHHHHHhcCCeEEeccCcCceeEeeccccc
Confidence 999999999999999987544 66655544
No 41
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.21 E-value=8.1e-11 Score=109.34 Aligned_cols=109 Identities=21% Similarity=0.305 Sum_probs=92.9
Q ss_pred EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhh---CCeeEEecCCChHhhhccCHHH
Q 021361 146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASN---CQILIVACSLTEETHHIVNRKV 217 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~---aDvv~l~~p~~~~t~~~i~~~~ 217 (313)
+|||||+|.||+.+|+.|...|++|.+|||+++.. .+.....+++++++. +|+|++++|..+.++.+++ ..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~-~l 80 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATID-EL 80 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHH-HH
Confidence 69999999999999999999999999999987542 234455689998876 6999999998877777764 57
Q ss_pred HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccC
Q 021361 218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDV 257 (313)
Q Consensus 218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV 257 (313)
+..+++|.++||++++.......+.+.+++..+. .+|.
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~da 118 (301)
T PRK09599 81 APLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVDV 118 (301)
T ss_pred HhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEeC
Confidence 7889999999999999999999999999998877 4564
No 42
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.15 E-value=1.1e-10 Score=105.57 Aligned_cols=113 Identities=15% Similarity=0.256 Sum_probs=99.2
Q ss_pred cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccC--
Q 021361 142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVN-- 214 (313)
Q Consensus 142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~-- 214 (313)
-+.++||+||+|.||..|+..|...|++|++|||+.++. .++....++.|+.+.||+|+.++|...+.+.++.
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~ 112 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGK 112 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCC
Confidence 357899999999999999999999999999999988754 4566788999999999999999999999988774
Q ss_pred HHHHhhcCCCcEE-EEcCCCCccCHHHHHHHHHhCCceEEEcc
Q 021361 215 RKVIDALGPSGIL-INIGRGAHIDEPELVSALLEGRLAGAGLD 256 (313)
Q Consensus 215 ~~~l~~mk~ga~~-in~~rg~~vd~~al~~al~~g~~~ga~lD 256 (313)
...|+..++|... |+.+.-+.--...+.+++...+.. .+|
T Consensus 113 ~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~--~vD 153 (327)
T KOG0409|consen 113 SGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGR--FVD 153 (327)
T ss_pred CcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCe--EEe
Confidence 4578888898877 999999999999999999998777 455
No 43
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.13 E-value=1.4e-10 Score=108.30 Aligned_cols=91 Identities=18% Similarity=0.293 Sum_probs=73.9
Q ss_pred cccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc------ccccccCCHHHHHhhCCeeEEecCCChHhhhcc
Q 021361 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD------ANYKYYTNIIDLASNCQILIVACSLTEETHHIV 213 (313)
Q Consensus 140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i 213 (313)
..|+|++|||||+|+||+++|+.|+.+|++|.++++...+. .+.. ..+.++++++||+|++++|.+.. ..++
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~-~~s~~eaa~~ADVVvLaVPd~~~-~~V~ 90 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFE-VLTVAEAAKWADVIMILLPDEVQ-AEVY 90 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCe-eCCHHHHHhcCCEEEEcCCHHHH-HHHH
Confidence 45899999999999999999999999999998877653321 2333 34899999999999999997655 6677
Q ss_pred CHHHHhhcCCCcEEEEcCCC
Q 021361 214 NRKVIDALGPSGILINIGRG 233 (313)
Q Consensus 214 ~~~~l~~mk~ga~~in~~rg 233 (313)
+++.+..|++|+++ -++.|
T Consensus 91 ~~~I~~~Lk~g~iL-~~a~G 109 (330)
T PRK05479 91 EEEIEPNLKEGAAL-AFAHG 109 (330)
T ss_pred HHHHHhcCCCCCEE-EECCC
Confidence 67788899999988 55556
No 44
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.11 E-value=3.8e-10 Score=104.48 Aligned_cols=110 Identities=15% Similarity=0.189 Sum_probs=91.7
Q ss_pred EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc----ccccccCCHHHHHhhCCeeEEecCCChHhhhccC--HHHHh
Q 021361 146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVN--RKVID 219 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~--~~~l~ 219 (313)
+|||||+|.||..+|+.|...|++|.+|+++++.. .+.....+..++.++||+|++|+|..+..+..+. ...++
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~ 81 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTK 81 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhc
Confidence 69999999999999999999999999999876421 2344457899999999999999998888887663 23577
Q ss_pred hcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccC
Q 021361 220 ALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDV 257 (313)
Q Consensus 220 ~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV 257 (313)
.+++|.++|+++...+-....+.+.+.+.... .+|.
T Consensus 82 ~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vda 117 (292)
T PRK15059 82 ASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLDA 117 (292)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEEe
Confidence 78999999999999999999999999887665 4553
No 45
>PLN02712 arogenate dehydrogenase
Probab=99.09 E-value=3e-10 Score=115.79 Aligned_cols=109 Identities=20% Similarity=0.302 Sum_probs=86.0
Q ss_pred ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc----ccccccCCHHHHHh-hCCeeEEecCCChHhhhcc
Q 021361 139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD----ANYKYYTNIIDLAS-NCQILIVACSLTEETHHIV 213 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~~l~~-~aDvv~l~~p~~~~t~~~i 213 (313)
++++.+++|||||+|.||+.+|+.|+.+|++|.+|+++.... .+.....++++++. .+|+|++|+|. ..+..++
T Consensus 364 ~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~~vi 442 (667)
T PLN02712 364 VNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTEKVL 442 (667)
T ss_pred cCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHHHHH
Confidence 567889999999999999999999999999999999985421 23334567888876 59999999994 5777777
Q ss_pred CHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 021361 214 NRKVIDALGPSGILINIGRGAHIDEPELVSALLEG 248 (313)
Q Consensus 214 ~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g 248 (313)
.+-....||+|++++|++.++-...+.+.+.+..+
T Consensus 443 ~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~ 477 (667)
T PLN02712 443 KSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQD 477 (667)
T ss_pred HHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCC
Confidence 76544569999999999999855556666555443
No 46
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.09 E-value=4.8e-10 Score=109.88 Aligned_cols=117 Identities=20% Similarity=0.307 Sum_probs=98.4
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc---------c--ccccCCHHHHHh---hCCeeEEecCCChHhh
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA---------N--YKYYTNIIDLAS---NCQILIVACSLTEETH 210 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~---------~--~~~~~~l~~l~~---~aDvv~l~~p~~~~t~ 210 (313)
.+|||||+|.||+.+|+.|...|++|.+|||+++... + ...+.+++++++ ++|+|++++|....++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 3799999999999999999999999999999876421 2 223578999987 4899999999998999
Q ss_pred hccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCC
Q 021361 211 HIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEP 262 (313)
Q Consensus 211 ~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP 262 (313)
.+++ +.+..+++|.++||++.+...|...+.+.+.+..+.....=|...++
T Consensus 82 ~vi~-~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~ 132 (470)
T PTZ00142 82 ETID-NLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE 132 (470)
T ss_pred HHHH-HHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH
Confidence 8884 57888999999999999999999999999999988844444565554
No 47
>PLN02256 arogenate dehydrogenase
Probab=99.09 E-value=1.7e-09 Score=100.50 Aligned_cols=105 Identities=21% Similarity=0.330 Sum_probs=80.7
Q ss_pred cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc----ccccccCCHHHHH-hhCCeeEEecCCChHhhhccCHH
Q 021361 142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD----ANYKYYTNIIDLA-SNCQILIVACSLTEETHHIVNRK 216 (313)
Q Consensus 142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~~l~-~~aDvv~l~~p~~~~t~~~i~~~ 216 (313)
-++++|||||+|.||+.+|+.|+..|++|++|+++.... .+.....+.++++ .++|+|++|+|.. .+..++.+-
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~-~~~~vl~~l 112 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSIL-STEAVLRSL 112 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHH-HHHHHHHhh
Confidence 467899999999999999999999999999999886321 2233346788876 4799999999953 566666543
Q ss_pred HHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361 217 VIDALGPSGILINIGRGAHIDEPELVSALLE 247 (313)
Q Consensus 217 ~l~~mk~ga~~in~~rg~~vd~~al~~al~~ 247 (313)
....+++++++++++..+-...+++.+.+..
T Consensus 113 ~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~ 143 (304)
T PLN02256 113 PLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE 143 (304)
T ss_pred hhhccCCCCEEEecCCchHHHHHHHHHhCCC
Confidence 2566899999999999776666666666544
No 48
>PLN02858 fructose-bisphosphate aldolase
Probab=99.07 E-value=4.9e-10 Score=121.96 Aligned_cols=113 Identities=16% Similarity=0.175 Sum_probs=98.1
Q ss_pred CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhcc--CH
Q 021361 143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIV--NR 215 (313)
Q Consensus 143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i--~~ 215 (313)
+.++|||||+|.||..||+.|...|++|.+|||++... .+...+.++.++.++||+|++|+|..+.++.++ ..
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~ 82 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE 82 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence 35689999999999999999999999999999987643 345567899999999999999999999988876 35
Q ss_pred HHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCC--ceEEEccC
Q 021361 216 KVIDALGPSGILINIGRGAHIDEPELVSALLEGR--LAGAGLDV 257 (313)
Q Consensus 216 ~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~--~~ga~lDV 257 (313)
..++.+++|.++|+++...+-....+.+.+.+.. +. .+|.
T Consensus 83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~--~lDa 124 (1378)
T PLN02858 83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIF--LVDA 124 (1378)
T ss_pred hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceE--EEEc
Confidence 6788899999999999999999999999998876 54 4553
No 49
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=99.05 E-value=5.9e-10 Score=107.21 Aligned_cols=99 Identities=17% Similarity=0.299 Sum_probs=81.7
Q ss_pred cccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccC
Q 021361 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVN 214 (313)
Q Consensus 140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~ 214 (313)
..+.|++|+|+|+|.||+.+++.++.+|++|+++++.+.+. .++. ..++++.++.+|+|+.+.. +.+.++
T Consensus 198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~-~~~~~e~v~~aDVVI~atG----~~~~i~ 272 (413)
T cd00401 198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYE-VMTMEEAVKEGDIFVTTTG----NKDIIT 272 (413)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCE-EccHHHHHcCCCEEEECCC----CHHHHH
Confidence 34789999999999999999999999999999998876542 2332 2357788899999998763 456788
Q ss_pred HHHHhhcCCCcEEEEcCCCCc-cCHHHHHH
Q 021361 215 RKVIDALGPSGILINIGRGAH-IDEPELVS 243 (313)
Q Consensus 215 ~~~l~~mk~ga~~in~~rg~~-vd~~al~~ 243 (313)
.+.+..||+|++++|+|++.. +|..+|..
T Consensus 273 ~~~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413)
T cd00401 273 GEHFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413)
T ss_pred HHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence 888999999999999999876 88877764
No 50
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.04 E-value=1.9e-09 Score=100.04 Aligned_cols=104 Identities=19% Similarity=0.268 Sum_probs=86.2
Q ss_pred EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHH---hhCCeeEEecCCChHhhhccCHHH
Q 021361 146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLA---SNCQILIVACSLTEETHHIVNRKV 217 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~---~~aDvv~l~~p~~~~t~~~i~~~~ 217 (313)
+|||||+|.||..+|+.|...|++|.+|||+++.. .+.....+++++. .++|+|++++|.. .++.+++ +.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~~-~l 79 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVLE-EL 79 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHHH-HH
Confidence 79999999999999999999999999999987542 1222335666654 4689999999977 7777774 57
Q ss_pred HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361 218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLA 251 (313)
Q Consensus 218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ 251 (313)
...+++|.++||++.+...+...+.+.+.+..+.
T Consensus 80 ~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~ 113 (298)
T TIGR00872 80 APTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH 113 (298)
T ss_pred HhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe
Confidence 7889999999999999999999999999887776
No 51
>PLN02858 fructose-bisphosphate aldolase
Probab=99.02 E-value=1.9e-09 Score=117.45 Aligned_cols=112 Identities=13% Similarity=0.141 Sum_probs=95.4
Q ss_pred CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhcc--CH
Q 021361 143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIV--NR 215 (313)
Q Consensus 143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i--~~ 215 (313)
..++|||||+|.||..||+.|...|++|.+|||++... .+.....++.+++++||+|++|+|....++.++ ..
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~ 402 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDL 402 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchh
Confidence 35889999999999999999999999999999987542 233446789999999999999999988888877 34
Q ss_pred HHHhhcCCCcEEEEcCCCCccCHHHHHHHHHh--CCceEEEcc
Q 021361 216 KVIDALGPSGILINIGRGAHIDEPELVSALLE--GRLAGAGLD 256 (313)
Q Consensus 216 ~~l~~mk~ga~~in~~rg~~vd~~al~~al~~--g~~~ga~lD 256 (313)
..++.+++|.++||++...+-..+.+.+.+.+ ..+. .+|
T Consensus 403 g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~--~lD 443 (1378)
T PLN02858 403 GAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIK--LVD 443 (1378)
T ss_pred hHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcE--EEE
Confidence 57888999999999999999999999999988 5555 455
No 52
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.01 E-value=1.9e-09 Score=105.63 Aligned_cols=116 Identities=16% Similarity=0.251 Sum_probs=94.0
Q ss_pred EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc--------c--ccccCCHHHHHh---hCCeeEEecCCChHhhhc
Q 021361 146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA--------N--YKYYTNIIDLAS---NCQILIVACSLTEETHHI 212 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~--------~--~~~~~~l~~l~~---~aDvv~l~~p~~~~t~~~ 212 (313)
.|||||+|.||+.||+.|...|++|.+|||+++... + .....+++++++ ++|+|++++|..+.++.+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 389999999999999999999999999999875421 1 223457788774 689999999988888888
Q ss_pred cCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCC
Q 021361 213 VNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEP 262 (313)
Q Consensus 213 i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP 262 (313)
++ +.+..+++|.++||++.+..-+...+.+.+.+..+.....=|...++
T Consensus 81 i~-~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~ 129 (467)
T TIGR00873 81 IN-QLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEE 129 (467)
T ss_pred HH-HHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHH
Confidence 74 57788999999999999999999999999988888744444555443
No 53
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=98.99 E-value=1.7e-09 Score=99.94 Aligned_cols=106 Identities=13% Similarity=0.166 Sum_probs=87.9
Q ss_pred EEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccC--HHHHhhc
Q 021361 149 IVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVN--RKVIDAL 221 (313)
Q Consensus 149 iiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~--~~~l~~m 221 (313)
|||+|.||..+|+.|...|++|.+|||+.+.. .+.....++.+++++||+|++|+|....++.++. ...+..+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 68999999999999999999999999987542 2344456899999999999999998777777763 4567789
Q ss_pred CCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEcc
Q 021361 222 GPSGILINIGRGAHIDEPELVSALLEGRLAGAGLD 256 (313)
Q Consensus 222 k~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lD 256 (313)
++|.++||++...+-....+.+.+.+..+. .+|
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vd 113 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMD 113 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence 999999999988877778888888876665 455
No 54
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.99 E-value=5.6e-09 Score=96.71 Aligned_cols=100 Identities=23% Similarity=0.250 Sum_probs=76.8
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc----------------c------------ccccCCHHHHHhhC
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA----------------N------------YKYYTNIIDLASNC 196 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----------------~------------~~~~~~l~~l~~~a 196 (313)
++|||||+|.||..+|+.+...|++|++||++.+... + .....+..+.+++|
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a 84 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA 84 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence 6899999999999999999999999999999874321 0 01122333568999
Q ss_pred CeeEEecCCChHhhhccCHHHHhhcCCCcEEE-EcCCCCccCHHHHHHHHHh
Q 021361 197 QILIVACSLTEETHHIVNRKVIDALGPSGILI-NIGRGAHIDEPELVSALLE 247 (313)
Q Consensus 197 Dvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~i-n~~rg~~vd~~al~~al~~ 247 (313)
|+|+.|+|.+++.+..+-++..+.++++++|+ |+|.- ....+.+.+..
T Consensus 85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i---~~~~l~~~~~~ 133 (295)
T PLN02545 85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSI---SITRLASATQR 133 (295)
T ss_pred CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCC---CHHHHHhhcCC
Confidence 99999999999988877777777899999886 66655 44556665543
No 55
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.92 E-value=1.5e-08 Score=93.47 Aligned_cols=110 Identities=14% Similarity=0.134 Sum_probs=80.8
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccccc-----------------------------ccccCCHHHHHhh
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDAN-----------------------------YKYYTNIIDLASN 195 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~-----------------------------~~~~~~l~~l~~~ 195 (313)
++|+|||.|.||..+|..|...|++|++||++++.... .....++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 58999999999999999999999999999998643110 1124578889999
Q ss_pred CCeeEEecCCChHhhhccCHHHHhhcCCCcEE-EEcCCCCccCHHHHHHHHHhCCceEEEccCC
Q 021361 196 CQILIVACSLTEETHHIVNRKVIDALGPSGIL-INIGRGAHIDEPELVSALLEGRLAGAGLDVY 258 (313)
Q Consensus 196 aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~-in~~rg~~vd~~al~~al~~g~~~ga~lDV~ 258 (313)
||+|+.|+|...+.+..+-.+..+.+++++++ +|+|.-. .+.+.+.++. .-...++..+
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~---~~~l~~~~~~-~~r~~g~h~~ 141 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMS---PTEIASFTKR-PERVIAMHFF 141 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcCC-cccEEEEecC
Confidence 99999999988777665555566778999876 7887744 4556665543 2222345544
No 56
>PRK08655 prephenate dehydrogenase; Provisional
Probab=98.90 E-value=1.3e-08 Score=99.22 Aligned_cols=127 Identities=19% Similarity=0.321 Sum_probs=92.0
Q ss_pred EEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCccc------ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHH
Q 021361 146 SVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEKSD------ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVI 218 (313)
Q Consensus 146 ~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l 218 (313)
+|+||| +|.||+.+|+.|+..|++|.+|+|+.... .+.....+..+.+.+||+|++++|.. .+..++ .+..
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~-~~~~vl-~~l~ 79 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPIN-VTEDVI-KEVA 79 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHH-HHHHHH-HHHH
Confidence 799997 89999999999999999999999876542 13333457888899999999999963 445555 4566
Q ss_pred hhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCC--CCcccCCCCcEEEcCCC
Q 021361 219 DALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPE--VPEQMLGLNNVVLLPHV 280 (313)
Q Consensus 219 ~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~--~~~~l~~~pnvi~TPHi 280 (313)
..+++++++++++..+....+++.+.+..+ .. +....|. +..+++.-..++++|+-
T Consensus 80 ~~l~~~~iViDvsSvK~~~~~~l~~~~~~~-~~-----~V~~HPmaGp~~~~~~g~~~il~p~~ 137 (437)
T PRK08655 80 PHVKEGSLLMDVTSVKERPVEAMEEYAPEG-VE-----ILPTHPMFGPRTPSLKGQVVILTPTE 137 (437)
T ss_pred hhCCCCCEEEEcccccHHHHHHHHHhcCCC-CE-----EEEcCCCCCCCCcccCCCEEEEecCC
Confidence 778999999999986655556666655432 11 1122332 22356677789999964
No 57
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.90 E-value=6.7e-09 Score=96.82 Aligned_cols=82 Identities=21% Similarity=0.399 Sum_probs=68.5
Q ss_pred CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHh-hc
Q 021361 143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVID-AL 221 (313)
Q Consensus 143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~-~m 221 (313)
.+.+|||||+|.||+.+|+.|...|++|.+|+|+.. .+++++++++|+|++++|. +..+.++.. ... .+
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~--------~~~~~~~~~advvi~~vp~-~~~~~v~~~-l~~~~~ 72 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG--------LSLAAVLADADVIVSAVSM-KGVRPVAEQ-VQALNL 72 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC--------CCHHHHHhcCCEEEEECCh-HHHHHHHHH-HHHhcC
Confidence 356899999999999999999999999999999754 4688999999999999997 467776633 323 47
Q ss_pred CCCcEEEEcCCCC
Q 021361 222 GPSGILINIGRGA 234 (313)
Q Consensus 222 k~ga~~in~~rg~ 234 (313)
++++++|++++|-
T Consensus 73 ~~~~ivi~~s~gi 85 (308)
T PRK14619 73 PPETIIVTATKGL 85 (308)
T ss_pred CCCcEEEEeCCcc
Confidence 8899999998743
No 58
>PLN02712 arogenate dehydrogenase
Probab=98.89 E-value=1.6e-08 Score=103.17 Aligned_cols=105 Identities=19% Similarity=0.324 Sum_probs=77.4
Q ss_pred cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc----ccccccCCHHHHH-hhCCeeEEecCCChHhhhccCHH
Q 021361 142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD----ANYKYYTNIIDLA-SNCQILIVACSLTEETHHIVNRK 216 (313)
Q Consensus 142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~~l~-~~aDvv~l~~p~~~~t~~~i~~~ 216 (313)
-+.++|||||+|.||+.+|+.|+.+|++|.+|+++.... .+.....++++++ .++|+|++|+|. ..+..++..-
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~l 128 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKSL 128 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHhh
Confidence 345689999999999999999999999999999874321 2333456788866 469999999995 4677777664
Q ss_pred HHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361 217 VIDALGPSGILINIGRGAHIDEPELVSALLE 247 (313)
Q Consensus 217 ~l~~mk~ga~~in~~rg~~vd~~al~~al~~ 247 (313)
.+..++++++|+|++.-+..-.+++.+.+.+
T Consensus 129 ~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~ 159 (667)
T PLN02712 129 PLQRLKRNTLFVDVLSVKEFAKNLLLDYLPE 159 (667)
T ss_pred hhhcCCCCeEEEECCCCcHHHHHHHHHhcCC
Confidence 4467899999999975553223344444433
No 59
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.88 E-value=1.2e-08 Score=99.24 Aligned_cols=129 Identities=15% Similarity=0.194 Sum_probs=92.2
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc----cc----------------cccCCHHHHHhhCCeeEEecC
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA----NY----------------KYYTNIIDLASNCQILIVACS 204 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----~~----------------~~~~~l~~l~~~aDvv~l~~p 204 (313)
.+|||||+|.||..+|..|.. |++|++||+++.+.. +. ...++..+.+++||++++|+|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~Vp 85 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITVP 85 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEcC
Confidence 579999999999999999877 799999999875421 11 022344457899999999999
Q ss_pred CC------hHhhhcc--CHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhC--CceEEEcc----CCCCCCCCCc----
Q 021361 205 LT------EETHHIV--NRKVIDALGPSGILINIGRGAHIDEPELVSALLEG--RLAGAGLD----VYENEPEVPE---- 266 (313)
Q Consensus 205 ~~------~~t~~~i--~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g--~~~ga~lD----V~~~EP~~~~---- 266 (313)
.. ++...++ .+...+.+++|.++|+.|.-.+-..+.+.+.+.+. ++. ..| +|.+||..+.
T Consensus 86 tp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~--~~~~~~~~~~PE~v~~G~a~~ 163 (425)
T PRK15182 86 TPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMT--FNQDFYVGYSPERINPGDKKH 163 (425)
T ss_pred CCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCC--cCCCeeEeeCCCcCCCCcccc
Confidence 65 2334444 24567889999999999999988888765554332 222 133 4678997653
Q ss_pred ccCCCCcEEE
Q 021361 267 QMLGLNNVVL 276 (313)
Q Consensus 267 ~l~~~pnvi~ 276 (313)
.+...|+++.
T Consensus 164 ~~~~~~riv~ 173 (425)
T PRK15182 164 RLTNIKKITS 173 (425)
T ss_pred cccCCCeEEE
Confidence 4667777754
No 60
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.86 E-value=7.7e-09 Score=96.49 Aligned_cols=91 Identities=18% Similarity=0.299 Sum_probs=68.5
Q ss_pred cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCC-cc-----cccccccCCHHHHHhhCCeeEEecCCChHhhhccCH
Q 021361 142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE-KS-----DANYKYYTNIIDLASNCQILIVACSLTEETHHIVNR 215 (313)
Q Consensus 142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~-~~-----~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~ 215 (313)
|+||+|||||+|+||+++|+.|+.+|++|+++++.. .. ..+.. ..+..+++++||+|++++|.... ...+.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~-~~s~~ea~~~ADiVvLaVpp~~~-~~~v~~ 78 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFK-VGTVEEAIPQADLIMNLLPDEVQ-HEVYEA 78 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCE-ECCHHHHHhcCCEEEEeCCcHhH-HHHHHH
Confidence 579999999999999999999999999887654433 22 12333 34688899999999999996433 334456
Q ss_pred HHHhhcCCCcEEEEcCCCCc
Q 021361 216 KVIDALGPSGILINIGRGAH 235 (313)
Q Consensus 216 ~~l~~mk~ga~~in~~rg~~ 235 (313)
+....++++. +|.++-|=-
T Consensus 79 ei~~~l~~g~-iVs~aaG~~ 97 (314)
T TIGR00465 79 EIQPLLKEGK-TLGFSHGFN 97 (314)
T ss_pred HHHhhCCCCc-EEEEeCCcc
Confidence 6777888886 788877753
No 61
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=98.86 E-value=1.3e-08 Score=93.57 Aligned_cols=136 Identities=22% Similarity=0.297 Sum_probs=85.5
Q ss_pred EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc-----c-ccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHh
Q 021361 146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA-----N-YKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVID 219 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-----~-~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~ 219 (313)
+|||||+|.||+.+|+.|+..|++|.+||++++... + .....+..+.+++||+|++|+|... ...++ ++...
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~-~~~~~-~~l~~ 79 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGL-LLPPS-EQLIP 79 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHH-HHHHH-HHHHH
Confidence 799999999999999999999999999999765321 1 1112222356889999999999543 33333 45667
Q ss_pred hcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEc-cCCCCCCC-CC---cccCCCCcEEEcCCCCCCcHHHH
Q 021361 220 ALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGL-DVYENEPE-VP---EQMLGLNNVVLLPHVGSDTEETS 288 (313)
Q Consensus 220 ~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~l-DV~~~EP~-~~---~~l~~~pnvi~TPHia~~t~~~~ 288 (313)
.+++++++++++.-+. + ..+++.......... =++.+|.. .. ..|+.-.++++||+-. .+.+..
T Consensus 80 ~l~~~~ii~d~~Svk~---~-~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~-~~~~~~ 148 (279)
T PRK07417 80 ALPPEAIVTDVGSVKA---P-IVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTEN-TDLNAL 148 (279)
T ss_pred hCCCCcEEEeCcchHH---H-HHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCC-CCHHHH
Confidence 7899999999987543 2 233332221111111 12222211 11 1267778899999754 344433
No 62
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.86 E-value=5.7e-09 Score=87.11 Aligned_cols=89 Identities=15% Similarity=0.332 Sum_probs=62.9
Q ss_pred cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc------cccccccCCHHHHHhhCCeeEEecCCChHhhhccCH
Q 021361 142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS------DANYKYYTNIIDLASNCQILIVACSLTEETHHIVNR 215 (313)
Q Consensus 142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~------~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~ 215 (313)
|+||+|+|||||+.|++-|..|+..|.+|.+-.|..++ ..+++ ..+..|++++||+|++.+|... -..++.+
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~-v~~~~eAv~~aDvV~~L~PD~~-q~~vy~~ 79 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFE-VMSVAEAVKKADVVMLLLPDEV-QPEVYEE 79 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-E-CCEHHHHHHC-SEEEE-S-HHH-HHHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCe-eccHHHHHhhCCEEEEeCChHH-HHHHHHH
Confidence 68999999999999999999999999999887776552 13333 4689999999999999998532 2335567
Q ss_pred HHHhhcCCCcEEEEcCCC
Q 021361 216 KVIDALGPSGILINIGRG 233 (313)
Q Consensus 216 ~~l~~mk~ga~~in~~rg 233 (313)
+....||+|+.++= +.|
T Consensus 80 ~I~p~l~~G~~L~f-ahG 96 (165)
T PF07991_consen 80 EIAPNLKPGATLVF-AHG 96 (165)
T ss_dssp HHHHHS-TT-EEEE-SSS
T ss_pred HHHhhCCCCCEEEe-CCc
Confidence 78889999998653 444
No 63
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.83 E-value=1.4e-08 Score=93.56 Aligned_cols=133 Identities=17% Similarity=0.230 Sum_probs=90.4
Q ss_pred ccccCCCEEEEEcCC-hhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361 139 GSKFSGKSVGIVGLG-RIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV 217 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~ 217 (313)
+.++.||+|+|||.| .||+.+|.+|...|+.|++|++... ++.++.++||+|+++++.. +++....
T Consensus 154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~---------~l~e~~~~ADIVIsavg~~----~~v~~~~ 220 (301)
T PRK14194 154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST---------DAKALCRQADIVVAAVGRP----RLIDADW 220 (301)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC---------CHHHHHhcCCEEEEecCCh----hcccHhh
Confidence 457999999999996 9999999999999999999987543 6999999999999999864 3566544
Q ss_pred HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHH
Q 021361 218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIE 297 (313)
Q Consensus 218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ 297 (313)
+|+|+++||+|-..+.+ +|+- ...=||-.++- .. ---.+||=-||--.-+..-..+.++.
T Consensus 221 ---ik~GaiVIDvgin~~~~---------~g~~-kl~GDvdf~~~------~~-~a~~iTPVPGGVGp~Tva~L~~N~~~ 280 (301)
T PRK14194 221 ---LKPGAVVIDVGINRIDD---------DGRS-RLVGDVDFDSA------LP-VVSAITPVPGGVGPMTIAFLMKNTVT 280 (301)
T ss_pred ---ccCCcEEEEecccccCC---------CCCc-ceecccchHHH------Hh-hcceecCCCCchhHHHHHHHHHHHHH
Confidence 89999999998554311 1310 13345521111 11 12467886666555444444444444
Q ss_pred HHHHHHc
Q 021361 298 NLVAHFS 304 (313)
Q Consensus 298 ni~~~~~ 304 (313)
-.+++..
T Consensus 281 a~~~~~~ 287 (301)
T PRK14194 281 AARLQAH 287 (301)
T ss_pred HHHHHHH
Confidence 4444443
No 64
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.82 E-value=6.8e-09 Score=79.65 Aligned_cols=85 Identities=24% Similarity=0.398 Sum_probs=63.0
Q ss_pred EEEEEcCChhHHHHHHHHHhcC---CcEE-EECCCCcccc------cccccC-CHHHHHhhCCeeEEecCCChHhhhccC
Q 021361 146 SVGIVGLGRIGTAIAKRVEAFG---CPIS-YHSRSEKSDA------NYKYYT-NIIDLASNCQILIVACSLTEETHHIVN 214 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~g---~~V~-~~~~~~~~~~------~~~~~~-~l~~l~~~aDvv~l~~p~~~~t~~~i~ 214 (313)
||||||+|+||+++++.|...| .+|. +++|++++.. +..... +..+++++||+|++++|.. ....++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~-~~~~v~- 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQ-QLPEVL- 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GG-GHHHHH-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHH-HHHHHH-
Confidence 6999999999999999999999 8898 5588886432 222334 7999999999999999853 333333
Q ss_pred HHHHhhcCCCcEEEEcCCC
Q 021361 215 RKVIDALGPSGILINIGRG 233 (313)
Q Consensus 215 ~~~l~~mk~ga~~in~~rg 233 (313)
.+. ....++.++|++.-|
T Consensus 79 ~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 79 SEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HHH-HHHHTTSEEEEESTT
T ss_pred HHH-hhccCCCEEEEeCCC
Confidence 333 667789999998654
No 65
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=98.82 E-value=3e-08 Score=92.40 Aligned_cols=142 Identities=15% Similarity=0.242 Sum_probs=89.2
Q ss_pred CCEEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCccc-----ccc--cccCCHHHHHhhCCeeEEecCCChHhhhccC
Q 021361 144 GKSVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSD-----ANY--KYYTNIIDLASNCQILIVACSLTEETHHIVN 214 (313)
Q Consensus 144 g~~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~-----~~~--~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~ 214 (313)
.++|+|||+|.||..+|+.|+..|. +|++|+|+++.. .+. ....+.++.+++||+|++++|.. ....++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-~~~~v~- 83 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-ASGAVA- 83 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-HHHHHH-
Confidence 4689999999999999999998885 799999986532 111 12356788899999999999963 333333
Q ss_pred HHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEc-cCCCCCCC-C--C-cccCCCCcEEEcCCCCCCcHHHHH
Q 021361 215 RKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGL-DVYENEPE-V--P-EQMLGLNNVVLLPHVGSDTEETSK 289 (313)
Q Consensus 215 ~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~l-DV~~~EP~-~--~-~~l~~~pnvi~TPHia~~t~~~~~ 289 (313)
++....++++.++++++....--.+++.+.+.. .+..... -++..|-. + . .+|+.-.+++++|+-+ .+.+..+
T Consensus 84 ~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~-~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~-~~~~~~~ 161 (307)
T PRK07502 84 AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE-GVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEG-TDPAAVA 161 (307)
T ss_pred HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC-CCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCC-CCHHHHH
Confidence 445567899999999976543222333333222 2221111 22222211 1 1 2466667889999654 3444443
No 66
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.82 E-value=4.4e-09 Score=100.89 Aligned_cols=101 Identities=26% Similarity=0.304 Sum_probs=75.5
Q ss_pred CCcCCCcccc-cccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCC------cc-----cccccccCCHHHHHhhCC
Q 021361 130 KWKNGHFELG-SKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE------KS-----DANYKYYTNIIDLASNCQ 197 (313)
Q Consensus 130 ~w~~~~~~~~-~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~------~~-----~~~~~~~~~l~~l~~~aD 197 (313)
-|.+..++.+ ..|+||+|+|||||++|++-|..|+..|.+|.+--|.. .+ ..+.. ..++++++++||
T Consensus 21 ~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~-v~~~~Ea~~~AD 99 (487)
T PRK05225 21 FMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFK-VGTYEELIPQAD 99 (487)
T ss_pred ecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCc-cCCHHHHHHhCC
Confidence 4765555443 57999999999999999988888888888877433321 11 12333 468999999999
Q ss_pred eeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCC
Q 021361 198 ILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGA 234 (313)
Q Consensus 198 vv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~ 234 (313)
+|++.+|++ . ++.+.++.+..||+|+.|. .|.|=
T Consensus 100 vVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~-fsHGF 133 (487)
T PRK05225 100 LVINLTPDK-Q-HSDVVRAVQPLMKQGAALG-YSHGF 133 (487)
T ss_pred EEEEcCChH-H-HHHHHHHHHhhCCCCCEEE-ecCCc
Confidence 999999998 3 6677799999999999864 34443
No 67
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.81 E-value=7.9e-08 Score=88.69 Aligned_cols=135 Identities=14% Similarity=0.182 Sum_probs=92.4
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc------------------------------cccccCCHHHHHh
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA------------------------------NYKYYTNIIDLAS 194 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~------------------------------~~~~~~~l~~l~~ 194 (313)
++|+|||.|.||..+|..+...|.+|+.||++.+... ......++++.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 5899999999999999999999999999998764210 0112467888899
Q ss_pred hCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhC-CceEEEccCCCCCCCCCcccCCCCc
Q 021361 195 NCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEG-RLAGAGLDVYENEPEVPEQMLGLNN 273 (313)
Q Consensus 195 ~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g-~~~ga~lDV~~~EP~~~~~l~~~pn 273 (313)
.||+|+.++|...+.+.-+-++..+.++++++++..+.+ +....+.+.+... ++.|. - . ..|.+..|.
T Consensus 84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt--~~~~~~~~~~~~~~r~vg~--H--f-----~~p~~~~~l 152 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST--LLPSQFAEATGRPEKFLAL--H--F-----ANEIWKNNT 152 (287)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc--CCHHHHHhhcCCcccEEEE--c--C-----CCCCCcCCe
Confidence 999999999977666655555566778889988543333 3556666665432 23332 1 1 223556678
Q ss_pred EEEcCCCCCCcHHHHHHH
Q 021361 274 VVLLPHVGSDTEETSKAM 291 (313)
Q Consensus 274 vi~TPHia~~t~~~~~~~ 291 (313)
+.+.|+-. .+.+..+..
T Consensus 153 vevv~~~~-t~~~~~~~~ 169 (287)
T PRK08293 153 AEIMGHPG-TDPEVFDTV 169 (287)
T ss_pred EEEeCCCC-CCHHHHHHH
Confidence 88888644 444444433
No 68
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.79 E-value=8.3e-08 Score=87.39 Aligned_cols=98 Identities=19% Similarity=0.315 Sum_probs=75.7
Q ss_pred EEEEEcCChhHHHHHHHHHhcCC----cEEEE-CCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCH
Q 021361 146 SVGIVGLGRIGTAIAKRVEAFGC----PISYH-SRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNR 215 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~g~----~V~~~-~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~ 215 (313)
+|||||+|+||.++++.|...|+ +|++| +|+.+.. .+.....+..+++++||+|++|+| ....+.++.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl~- 79 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVLT- 79 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHHH-
Confidence 69999999999999999998887 78888 8876542 234445688889999999999996 555666663
Q ss_pred HHHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361 216 KVIDALGPSGILINIGRGAHIDEPELVSALLE 247 (313)
Q Consensus 216 ~~l~~mk~ga~~in~~rg~~vd~~al~~al~~ 247 (313)
+....++++.++|++.-| +..+.+.+.+..
T Consensus 80 ~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~~ 109 (266)
T PLN02688 80 ELRPLLSKDKLLVSVAAG--ITLADLQEWAGG 109 (266)
T ss_pred HHHhhcCCCCEEEEecCC--CcHHHHHHHcCC
Confidence 455667889999988655 467777765543
No 69
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.79 E-value=1e-07 Score=89.18 Aligned_cols=101 Identities=14% Similarity=0.233 Sum_probs=82.0
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc--------------------c-----ccccCCHHHHHhhCCee
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA--------------------N-----YKYYTNIIDLASNCQIL 199 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~--------------------~-----~~~~~~l~~l~~~aDvv 199 (313)
++|||||.|.||..+|..+...|++|..||++++... + .....++++.+++||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 6899999999999999999999999999999864210 0 12346888999999999
Q ss_pred EEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361 200 IVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLE 247 (313)
Q Consensus 200 ~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~ 247 (313)
+-++|-+.+.+..+-++.-+.+++++ ++.++.. -+...++.+.++.
T Consensus 88 iEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS-~l~~s~la~~~~~ 133 (321)
T PRK07066 88 QESAPEREALKLELHERISRAAKPDA-IIASSTS-GLLPTDFYARATH 133 (321)
T ss_pred EECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCC-ccCHHHHHHhcCC
Confidence 99999999999877788888899998 4555555 4577778877754
No 70
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.78 E-value=7e-08 Score=93.61 Aligned_cols=104 Identities=11% Similarity=0.143 Sum_probs=77.4
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccccc-----c-ccCCHHHHH---------------hhCCeeEEec
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANY-----K-YYTNIIDLA---------------SNCQILIVAC 203 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~-----~-~~~~l~~l~---------------~~aDvv~l~~ 203 (313)
++|+|||+|.||..+|..|...|++|++||++++..... . ....+++++ ++||+|++|+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v 83 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV 83 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence 689999999999999999999999999999987542110 0 112444443 3799999999
Q ss_pred CCC------hHhhhcc--CHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 021361 204 SLT------EETHHIV--NRKVIDALGPSGILINIGRGAHIDEPELVSALLEG 248 (313)
Q Consensus 204 p~~------~~t~~~i--~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g 248 (313)
|.. ++...+. -+.....+++|+++|+.+.-.+-..+.+...+.+.
T Consensus 84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~ 136 (415)
T PRK11064 84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA 136 (415)
T ss_pred CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence 964 1222222 24567779999999999998888888888877664
No 71
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=98.77 E-value=2.2e-07 Score=88.99 Aligned_cols=121 Identities=17% Similarity=0.228 Sum_probs=84.0
Q ss_pred cHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCcc
Q 021361 101 TDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEKS 179 (313)
Q Consensus 101 ~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~ 179 (313)
.....+..+-.++...|+.. ++..+.. ..-..++|+||| +|.||+.+|+.|+..|++|.+|++...
T Consensus 67 ~~~~~~~i~~~i~~~s~~~q------~~~~~~~------~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~- 133 (374)
T PRK11199 67 PPDLIEDVLRRVMRESYSSE------NDKGFKT------LNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW- 133 (374)
T ss_pred CHHHHHHHHHHHHHHHHHHh------HHhcccc------cCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-
Confidence 44455666666666655432 2222211 111457999999 999999999999999999999998531
Q ss_pred cccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHH
Q 021361 180 DANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSA 244 (313)
Q Consensus 180 ~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~a 244 (313)
.+.++++++||+|++|+|... +..++ ++... +++|+++++++.-+..-.+++.+.
T Consensus 134 -------~~~~~~~~~aDlVilavP~~~-~~~~~-~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~ 188 (374)
T PRK11199 134 -------DRAEDILADAGMVIVSVPIHL-TEEVI-ARLPP-LPEDCILVDLTSVKNAPLQAMLAA 188 (374)
T ss_pred -------hhHHHHHhcCCEEEEeCcHHH-HHHHH-HHHhC-CCCCcEEEECCCccHHHHHHHHHh
Confidence 367788999999999999764 44455 33444 899999999977654334444443
No 72
>PRK06545 prephenate dehydrogenase; Validated
Probab=98.76 E-value=6.9e-08 Score=91.96 Aligned_cols=135 Identities=19% Similarity=0.261 Sum_probs=89.2
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc-----cc----cccCCHHHHHhhCCeeEEecCCChHhhhccCH
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA-----NY----KYYTNIIDLASNCQILIVACSLTEETHHIVNR 215 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-----~~----~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~ 215 (313)
++|+|||+|.||+++|+.|+..|++|.+|+++..... +. ....++++++++||+|++|+|.. .+..++.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~-~~~~vl~- 78 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVD-ATAALLA- 78 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHH-HHHHHHH-
Confidence 4799999999999999999999999888877654321 11 12356788899999999999964 5565553
Q ss_pred HHHh-hcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCC----------cccCCCCcEEEcCCCCCCc
Q 021361 216 KVID-ALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVP----------EQMLGLNNVVLLPHVGSDT 284 (313)
Q Consensus 216 ~~l~-~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~----------~~l~~~pnvi~TPHia~~t 284 (313)
+... .+++++++++++.-+.-..+++.+.+.. ... .+.. -|... ..|+.....++||+-. .+
T Consensus 79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~-~~~--~ig~---HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~-~~ 151 (359)
T PRK06545 79 ELADLELKPGVIVTDVGSVKGAILAEAEALLGD-LIR--FVGG---HPMAGSHKSGVAAARADLFENAPWVLTPDDH-TD 151 (359)
T ss_pred HHhhcCCCCCcEEEeCccccHHHHHHHHHhcCC-CCe--EEee---CCcCcCchhhHHHhcHHHHCCCcEEEecCCC-CC
Confidence 3433 4789999999988765444444433221 222 2232 23211 1467777789999754 33
Q ss_pred HHHH
Q 021361 285 EETS 288 (313)
Q Consensus 285 ~~~~ 288 (313)
.+..
T Consensus 152 ~~~~ 155 (359)
T PRK06545 152 PDAV 155 (359)
T ss_pred HHHH
Confidence 3433
No 73
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.75 E-value=1.1e-07 Score=87.83 Aligned_cols=98 Identities=23% Similarity=0.313 Sum_probs=73.9
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc----------------c-------------ccccCCHHHHHhh
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA----------------N-------------YKYYTNIIDLASN 195 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~~l~~~ 195 (313)
++|+|||.|.||..+|..+...|++|.+||++++... + .....+++ .+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 6899999999999999999999999999999764311 1 11234554 4789
Q ss_pred CCeeEEecCCChHhhhccCHHHHhhcCCCcEEE-EcCCCCccCHHHHHHHHH
Q 021361 196 CQILIVACSLTEETHHIVNRKVIDALGPSGILI-NIGRGAHIDEPELVSALL 246 (313)
Q Consensus 196 aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~i-n~~rg~~vd~~al~~al~ 246 (313)
||+|+.++|...+.+..+-++..+.++++++|+ |++.-. ...+.+.+.
T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~s~la~~~~ 132 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS---ITRLASATD 132 (292)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcC
Confidence 999999999887766655456777889999988 555433 346766653
No 74
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=98.73 E-value=1.3e-07 Score=86.73 Aligned_cols=130 Identities=20% Similarity=0.286 Sum_probs=88.0
Q ss_pred CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc--c-----ccc--cccCCH-HHHHhhCCeeEEecCCChHhhhcc
Q 021361 144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS--D-----ANY--KYYTNI-IDLASNCQILIVACSLTEETHHIV 213 (313)
Q Consensus 144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~--~-----~~~--~~~~~l-~~l~~~aDvv~l~~p~~~~t~~~i 213 (313)
-++|+|+|+|.||+.+|+.++..|+.+.++++.... . .+. ....+. .+..+++|+|++++|.. .+..++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~-~~~~~l 81 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIE-ATEEVL 81 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHH-HHHHHH
Confidence 368999999999999999999999987555444332 1 111 111233 66778899999999964 444444
Q ss_pred CHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCC----CcccCCCCcEEEcCCCC
Q 021361 214 NRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEV----PEQMLGLNNVVLLPHVG 281 (313)
Q Consensus 214 ~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~----~~~l~~~pnvi~TPHia 281 (313)
. +....+|+|+++++++.-+---.+++.+.+.++. . +...-|.. ..+++..-.+++||.-.
T Consensus 82 ~-~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~-----~vg~HPM~G~~~~~~lf~~~~~vltp~~~ 146 (279)
T COG0287 82 K-ELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-R-----FVGGHPMFGPEADAGLFENAVVVLTPSEG 146 (279)
T ss_pred H-HhcccCCCCCEEEecccccHHHHHHHHHhccCCC-e-----eEecCCCCCCcccccccCCCEEEEcCCCC
Confidence 3 3445799999999999877655566655554432 2 22445532 23688888899999643
No 75
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.71 E-value=2.9e-07 Score=84.63 Aligned_cols=100 Identities=17% Similarity=0.242 Sum_probs=75.0
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc----------------c-------------ccccCCHHHHHhh
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA----------------N-------------YKYYTNIIDLASN 195 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~~l~~~ 195 (313)
++|+|||.|.||..+|..+...|++|.+||++++... + .....+.+ .+++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 5899999999999999999999999999998764321 1 11134554 4789
Q ss_pred CCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361 196 CQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLE 247 (313)
Q Consensus 196 aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~ 247 (313)
||+|+.++|-+...+.-+-++..+.++++++++....| +..+.+.+.+..
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~ 132 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKR 132 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCC
Confidence 99999999987777755555566778999988444344 666688887743
No 76
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.70 E-value=2.1e-07 Score=92.32 Aligned_cols=101 Identities=12% Similarity=0.177 Sum_probs=76.5
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc------------------------c-ccccCCHHHHHhhCCee
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA------------------------N-YKYYTNIIDLASNCQIL 199 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~------------------------~-~~~~~~l~~l~~~aDvv 199 (313)
++|||||.|.||..+|..|...|++|.+||++++... + .....++++++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 4899999999999999999999999999999865321 1 23456888999999999
Q ss_pred EEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361 200 IVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLE 247 (313)
Q Consensus 200 ~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~ 247 (313)
+.++|...+.+..+-++.-+.++++++ |.++..++ ..+.+.+.+..
T Consensus 85 ieavpe~~~vk~~l~~~l~~~~~~~~i-I~SsTsgi-~~s~l~~~~~~ 130 (495)
T PRK07531 85 QESVPERLDLKRRVLAEIDAAARPDAL-IGSSTSGF-LPSDLQEGMTH 130 (495)
T ss_pred EEcCcCCHHHHHHHHHHHHhhCCCCcE-EEEcCCCC-CHHHHHhhcCC
Confidence 999998877776554455556777765 55555554 36677776644
No 77
>PRK08818 prephenate dehydrogenase; Provisional
Probab=98.70 E-value=4.5e-07 Score=86.35 Aligned_cols=121 Identities=17% Similarity=0.257 Sum_probs=83.2
Q ss_pred CCCEEEEEcC-ChhHHHHHHHHHh-cCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCH--HHH
Q 021361 143 SGKSVGIVGL-GRIGTAIAKRVEA-FGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNR--KVI 218 (313)
Q Consensus 143 ~g~~vgiiG~-G~iG~~~a~~l~~-~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~--~~l 218 (313)
.-.+|+|||+ |.||+.+|+.|+. +|.+|++||+..+ ...++++.+++||+|++|+|.. .+..++.+ ...
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~------~~~~~~~~v~~aDlVilavPv~-~~~~~l~~l~~~~ 75 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP------GSLDPATLLQRADVLIFSAPIR-HTAALIEEYVALA 75 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc------ccCCHHHHhcCCCEEEEeCCHH-HHHHHHHHHhhhh
Confidence 4569999999 9999999999995 5889999998522 1346788999999999999964 34444432 112
Q ss_pred hhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCC-C--cccCCCCcEEEcCC
Q 021361 219 DALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEV-P--EQMLGLNNVVLLPH 279 (313)
Q Consensus 219 ~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~-~--~~l~~~pnvi~TPH 279 (313)
..+++++++++++.-+- .+.+++..... ++...-|.. + ..+++.-++++||.
T Consensus 76 ~~l~~~~iVtDVgSvK~----~i~~~~~~~~~-----~fVG~HPMaG~E~s~lf~g~~~iltp~ 130 (370)
T PRK08818 76 GGRAAGQLWLDVTSIKQ----APVAAMLASQA-----EVVGLHPMTAPPKSPTLKGRVMVVCEA 130 (370)
T ss_pred cCCCCCeEEEECCCCcH----HHHHHHHhcCC-----CEEeeCCCCCCCCCcccCCCeEEEeCC
Confidence 34899999999987662 22222222211 233455632 1 25777778999986
No 78
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=98.69 E-value=5.1e-08 Score=90.31 Aligned_cols=98 Identities=20% Similarity=0.362 Sum_probs=82.1
Q ss_pred ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCH
Q 021361 141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNR 215 (313)
Q Consensus 141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~ 215 (313)
-+.||++-|.|||..|+.+|.++++.|++|.+....+-.. .+++ ...+++....+|+++.++ .+++.|..
T Consensus 206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~-V~~m~~Aa~~gDifiT~T----GnkdVi~~ 280 (420)
T COG0499 206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFR-VMTMEEAAKTGDIFVTAT----GNKDVIRK 280 (420)
T ss_pred eecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcE-EEEhHHhhhcCCEEEEcc----CCcCccCH
Confidence 3689999999999999999999999999999987766432 3444 357999999999999877 66899999
Q ss_pred HHHhhcCCCcEEEEcCCCCc-cCHHHHHH
Q 021361 216 KVIDALGPSGILINIGRGAH-IDEPELVS 243 (313)
Q Consensus 216 ~~l~~mk~ga~~in~~rg~~-vd~~al~~ 243 (313)
+.|..||+|+++.|.|.=.. +|.+.|.+
T Consensus 281 eh~~~MkDgaIl~N~GHFd~EI~~~~L~~ 309 (420)
T COG0499 281 EHFEKMKDGAILANAGHFDVEIDVAGLEE 309 (420)
T ss_pred HHHHhccCCeEEecccccceeccHHHHHH
Confidence 99999999999999986554 66666554
No 79
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.67 E-value=3.2e-08 Score=94.56 Aligned_cols=91 Identities=18% Similarity=0.295 Sum_probs=72.8
Q ss_pred ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc------cccc---c---cCCHHHHHhhCCeeEEecCCCh-
Q 021361 141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD------ANYK---Y---YTNIIDLASNCQILIVACSLTE- 207 (313)
Q Consensus 141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------~~~~---~---~~~l~~l~~~aDvv~l~~p~~~- 207 (313)
.+.+++|.|+|.|.+|+.+++.++.+|++|.++|++.... .+.. . ...+.+.++++|+|+.+++.+.
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 4678899999999999999999999999999999876431 1110 0 1346777899999999986532
Q ss_pred HhhhccCHHHHhhcCCCcEEEEcC
Q 021361 208 ETHHIVNRKVIDALGPSGILINIG 231 (313)
Q Consensus 208 ~t~~~i~~~~l~~mk~ga~~in~~ 231 (313)
.+..+++++.++.||+++++||++
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEEe
Confidence 345578999999999999999987
No 80
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.66 E-value=2e-07 Score=81.54 Aligned_cols=105 Identities=18% Similarity=0.271 Sum_probs=81.6
Q ss_pred ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc------cccccCCHHHHHh-hCCeeEEecCCChHhhh
Q 021361 139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA------NYKYYTNIIDLAS-NCQILIVACSLTEETHH 211 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~------~~~~~~~l~~l~~-~aDvv~l~~p~~~~t~~ 211 (313)
+.+++||+++|+|+|+||+.+|+.|..+|++|+++|++.+... +... .+.++++. +||+++.+.. .+
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~-v~~~~l~~~~~Dv~vp~A~-----~~ 96 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATV-VAPEEIYSVDADVFAPCAL-----GG 96 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEE-EcchhhccccCCEEEeccc-----cc
Confidence 3468999999999999999999999999999999998765321 2222 23455654 7999886654 45
Q ss_pred ccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361 212 IVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA 251 (313)
Q Consensus 212 ~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ 251 (313)
+|+++.++.|+ ..+++.-+-+.+.| ..-.+.|++..+.
T Consensus 97 ~I~~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~ 134 (200)
T cd01075 97 VINDDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGIL 134 (200)
T ss_pred ccCHHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCE
Confidence 89999999997 56888888888876 5566777888776
No 81
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.66 E-value=1.2e-07 Score=80.56 Aligned_cols=82 Identities=22% Similarity=0.374 Sum_probs=70.6
Q ss_pred cccCCCEEEEEcCChh-HHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHH
Q 021361 140 SKFSGKSVGIVGLGRI-GTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVI 218 (313)
Q Consensus 140 ~~l~g~~vgiiG~G~i-G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l 218 (313)
..|.|+++.|||.|.+ |+.+|+.|...|++|++.+|+. .++.+.++++|+|+.+++.. +++.++.
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~---------~~l~~~l~~aDiVIsat~~~----~ii~~~~- 105 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT---------KNLKEHTKQADIVIVAVGKP----GLVKGDM- 105 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc---------hhHHHHHhhCCEEEEcCCCC----ceecHHH-
Confidence 3589999999999996 8889999999999999999863 36888999999999999753 3688765
Q ss_pred hhcCCCcEEEEcCCCCccC
Q 021361 219 DALGPSGILINIGRGAHID 237 (313)
Q Consensus 219 ~~mk~ga~~in~~rg~~vd 237 (313)
++++.++||+|...-+|
T Consensus 106 --~~~~~viIDla~prdvd 122 (168)
T cd01080 106 --VKPGAVVIDVGINRVPD 122 (168)
T ss_pred --ccCCeEEEEccCCCccc
Confidence 58899999999988887
No 82
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.66 E-value=4.9e-07 Score=87.68 Aligned_cols=131 Identities=15% Similarity=0.204 Sum_probs=88.8
Q ss_pred EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc------------------------c-ccccCCHHHHHhhCCeeE
Q 021361 146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA------------------------N-YKYYTNIIDLASNCQILI 200 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~------------------------~-~~~~~~l~~l~~~aDvv~ 200 (313)
+|||||+|.||..+|..|...|++|++||++.+... + .....++++++++||+|+
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advvi 81 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVII 81 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEEE
Confidence 699999999999999999999999999998765310 1 223457888899999999
Q ss_pred EecCCChH------hhhcc--CHHHHhhcCCCcEEEEcCCCCccCHHHHHHHH-HhC-CceEEEccC---CCCCCCCCc-
Q 021361 201 VACSLTEE------THHIV--NRKVIDALGPSGILINIGRGAHIDEPELVSAL-LEG-RLAGAGLDV---YENEPEVPE- 266 (313)
Q Consensus 201 l~~p~~~~------t~~~i--~~~~l~~mk~ga~~in~~rg~~vd~~al~~al-~~g-~~~ga~lDV---~~~EP~~~~- 266 (313)
+|+|.... ...+. .....+.+++|.++|+.|.-.+=..+.+.+.+ ++. .+. ...|. +.+|...+.
T Consensus 82 i~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~-~~~d~~v~~~Pe~~~~G~ 160 (411)
T TIGR03026 82 ICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLK-LGEDFYLAYNPEFLREGN 160 (411)
T ss_pred EEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCC-CCCCceEEECCCcCCCCC
Confidence 99996532 11122 13456678999999999876666666776444 431 111 12342 344544332
Q ss_pred ---ccCCCCcEEEc
Q 021361 267 ---QMLGLNNVVLL 277 (313)
Q Consensus 267 ---~l~~~pnvi~T 277 (313)
.++..+.+++.
T Consensus 161 ~~~~~~~~~~iv~G 174 (411)
T TIGR03026 161 AVHDLLNPDRIVGG 174 (411)
T ss_pred hhhhhcCCCEEEEe
Confidence 35666777766
No 83
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.65 E-value=1.6e-07 Score=78.29 Aligned_cols=106 Identities=17% Similarity=0.245 Sum_probs=78.8
Q ss_pred ccCCCEEEEEcCChhHHHHHHHHHhcC-CcEEEECCCCcccc------cc----cccCCHHHHHhhCCeeEEecCCChH-
Q 021361 141 KFSGKSVGIVGLGRIGTAIAKRVEAFG-CPISYHSRSEKSDA------NY----KYYTNIIDLASNCQILIVACSLTEE- 208 (313)
Q Consensus 141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~------~~----~~~~~l~~l~~~aDvv~l~~p~~~~- 208 (313)
.+++++++|+|.|.||+.+++.+...| .+|.+++|+.+... +. ....+..++++++|+|++++|....
T Consensus 16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~ 95 (155)
T cd01065 16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKP 95 (155)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCC
Confidence 466889999999999999999999886 67999999865321 11 1235677788999999999998654
Q ss_pred hhh-ccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361 209 THH-IVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA 251 (313)
Q Consensus 209 t~~-~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ 251 (313)
... .+.. ..++++.+++|++..+... .+.+.+++..+.
T Consensus 96 ~~~~~~~~---~~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~~ 134 (155)
T cd01065 96 GDELPLPP---SLLKPGGVVYDVVYNPLET--PLLKEARALGAK 134 (155)
T ss_pred CCCCCCCH---HHcCCCCEEEEcCcCCCCC--HHHHHHHHCCCc
Confidence 222 2332 2368999999998775443 788888776554
No 84
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.65 E-value=1.2e-07 Score=86.85 Aligned_cols=81 Identities=16% Similarity=0.371 Sum_probs=69.2
Q ss_pred ccccCCCEEEEEcCChh-HHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361 139 GSKFSGKSVGIVGLGRI-GTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV 217 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~i-G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~ 217 (313)
+.++.||++.|||.|.+ |+.++.+|...|+.|+++.... .++.+.+++||+|+++++ +.++++.
T Consensus 153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t---------~~l~~~~~~ADIVV~avG----~~~~i~~-- 217 (285)
T PRK14189 153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT---------RDLAAHTRQADIVVAAVG----KRNVLTA-- 217 (285)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC---------CCHHHHhhhCCEEEEcCC----CcCccCH--
Confidence 45789999999999999 9999999999999998876432 368899999999999997 3567887
Q ss_pred HhhcCCCcEEEEcCCCCc
Q 021361 218 IDALGPSGILINIGRGAH 235 (313)
Q Consensus 218 l~~mk~ga~~in~~rg~~ 235 (313)
+.+|+|+++||+|-..+
T Consensus 218 -~~ik~gavVIDVGin~~ 234 (285)
T PRK14189 218 -DMVKPGATVIDVGMNRD 234 (285)
T ss_pred -HHcCCCCEEEEcccccc
Confidence 55899999999996554
No 85
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.64 E-value=1.3e-07 Score=87.25 Aligned_cols=78 Identities=19% Similarity=0.385 Sum_probs=66.3
Q ss_pred cccCCCEEEEEc-CChhHHHHHHHHHhcCCcEEEEC-CCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361 140 SKFSGKSVGIVG-LGRIGTAIAKRVEAFGCPISYHS-RSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV 217 (313)
Q Consensus 140 ~~l~g~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~ 217 (313)
.++.||+|+||| .|.||+.+|.+|...|+.|++|+ |+. ++++++++||+|+++++... ++.+..
T Consensus 154 i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~----------~l~e~~~~ADIVIsavg~~~----~v~~~~ 219 (296)
T PRK14188 154 GDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR----------DLPAVCRRADILVAAVGRPE----MVKGDW 219 (296)
T ss_pred CCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC----------CHHHHHhcCCEEEEecCChh----hcchhe
Confidence 468999999999 99999999999999999999995 543 58999999999999998643 455433
Q ss_pred HhhcCCCcEEEEcCCCC
Q 021361 218 IDALGPSGILINIGRGA 234 (313)
Q Consensus 218 l~~mk~ga~~in~~rg~ 234 (313)
+|+|+++||+|--.
T Consensus 220 ---lk~GavVIDvGin~ 233 (296)
T PRK14188 220 ---IKPGATVIDVGINR 233 (296)
T ss_pred ---ecCCCEEEEcCCcc
Confidence 89999999998654
No 86
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.63 E-value=1.3e-07 Score=86.70 Aligned_cols=98 Identities=17% Similarity=0.231 Sum_probs=76.2
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCC----cEEEECCCCccc------ccccccCCHHHHHhhCCeeEEecCCChHhhhccC
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGC----PISYHSRSEKSD------ANYKYYTNIIDLASNCQILIVACSLTEETHHIVN 214 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~----~V~~~~~~~~~~------~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~ 214 (313)
++|||||+|+||.++++.|...|+ +|++++|+.+.. .+.....+..+++++||+|++++|. .....++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl- 80 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYSSVI- 80 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHH-
Confidence 479999999999999999998774 599999876542 2333456788899999999999994 5666655
Q ss_pred HHHHhhcCCCcEEEEcCCCCccCHHHHHHHHH
Q 021361 215 RKVIDALGPSGILINIGRGAHIDEPELVSALL 246 (313)
Q Consensus 215 ~~~l~~mk~ga~~in~~rg~~vd~~al~~al~ 246 (313)
.+....++++.++|++.-| ++.+.|.+.+.
T Consensus 81 ~~l~~~~~~~~lvISi~AG--i~i~~l~~~l~ 110 (272)
T PRK12491 81 NQIKDQIKNDVIVVTIAAG--KSIKSTENEFD 110 (272)
T ss_pred HHHHHhhcCCcEEEEeCCC--CcHHHHHHhcC
Confidence 3455567888999999877 56677777664
No 87
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.62 E-value=8.2e-07 Score=81.96 Aligned_cols=89 Identities=16% Similarity=0.179 Sum_probs=72.2
Q ss_pred hHHHHHHHHHhcCCcEEEECCCCccc----------ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCC
Q 021361 155 IGTAIAKRVEAFGCPISYHSRSEKSD----------ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPS 224 (313)
Q Consensus 155 iG~~~a~~l~~~g~~V~~~~~~~~~~----------~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~g 224 (313)
-|+.||+.|...|++|++|||+.... .+.....+..+++++||+|++|+|..+.++.++ ...++.+++|
T Consensus 31 gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~G 109 (341)
T TIGR01724 31 GGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPEN 109 (341)
T ss_pred CHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCC
Confidence 38899999999999999999865421 245556789999999999999999888888887 5688999999
Q ss_pred cEEEEcCCCCccCHHHHHHHHHh
Q 021361 225 GILINIGRGAHIDEPELVSALLE 247 (313)
Q Consensus 225 a~~in~~rg~~vd~~al~~al~~ 247 (313)
+++||++. ++.+.++..|..
T Consensus 110 aIVID~ST---IsP~t~~~~~e~ 129 (341)
T TIGR01724 110 AVICNTCT---VSPVVLYYSLEK 129 (341)
T ss_pred CEEEECCC---CCHHHHHHHHHH
Confidence 99999966 455666666655
No 88
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.62 E-value=4.7e-07 Score=83.71 Aligned_cols=100 Identities=22% Similarity=0.279 Sum_probs=75.1
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc-------------------cc-------------cccCCHHHH
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA-------------------NY-------------KYYTNIIDL 192 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-------------------~~-------------~~~~~l~~l 192 (313)
++|+|||.|.||..+|..+...|++|+.||++++... +. ....++ +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 5899999999999999999999999999998764321 00 112344 56
Q ss_pred HhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361 193 ASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLE 247 (313)
Q Consensus 193 ~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~ 247 (313)
+++||+|+.++|...+.+.-+-++.-+.++++++|++...| +..+.+.+.+..
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~ 135 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALER 135 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCC
Confidence 78999999999987665554445555668899999877666 466777777743
No 89
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.62 E-value=1.9e-07 Score=82.24 Aligned_cols=111 Identities=20% Similarity=0.261 Sum_probs=94.0
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHH---hhCCeeEEecCCChHhhhccCHH
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLA---SNCQILIVACSLTEETHHIVNRK 216 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~---~~aDvv~l~~p~~~~t~~~i~~~ 216 (313)
.++|.||+|+||..++++|...|.+|++||+++... .+.....++++++ ....+|.+++|....|...|+ +
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~-~ 79 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVID-D 79 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHH-H
Confidence 368999999999999999999999999999987542 3344456777765 457899999999877777766 4
Q ss_pred HHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCC
Q 021361 217 VIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVY 258 (313)
Q Consensus 217 ~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~ 258 (313)
+-..|.+|-++|+-+....-|.....+.|.+..|. .+||-
T Consensus 80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~G 119 (300)
T COG1023 80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVG 119 (300)
T ss_pred HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEecc
Confidence 66789999999999999999999999999999997 78874
No 90
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.62 E-value=1.2e-07 Score=86.89 Aligned_cols=104 Identities=22% Similarity=0.255 Sum_probs=78.4
Q ss_pred CCCEEEEEcCChhHHHHHHHHHh--cCCcEE-EECCCCcccc------c-ccccCCHHHHHhhCCeeEEecCCChHhhhc
Q 021361 143 SGKSVGIVGLGRIGTAIAKRVEA--FGCPIS-YHSRSEKSDA------N-YKYYTNIIDLASNCQILIVACSLTEETHHI 212 (313)
Q Consensus 143 ~g~~vgiiG~G~iG~~~a~~l~~--~g~~V~-~~~~~~~~~~------~-~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~ 212 (313)
...+|||||+|.||+.+++.+.. .++++. ++||.++... + ...+.+++++++++|+|++|+|..... -
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h~--e 82 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVLR--A 82 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHHH--H
Confidence 45799999999999999999986 478875 7888765321 2 234678999999999999999964332 2
Q ss_pred cCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361 213 VNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA 251 (313)
Q Consensus 213 i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ 251 (313)
+. ...++.|.-++..+.|.+.+.++|.++.++++..
T Consensus 83 ~~---~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~ 118 (271)
T PRK13302 83 IV---EPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ 118 (271)
T ss_pred HH---HHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence 22 3335667767778899888899999999887654
No 91
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=98.60 E-value=8.4e-08 Score=87.02 Aligned_cols=90 Identities=19% Similarity=0.359 Sum_probs=76.0
Q ss_pred ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCH
Q 021361 141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNR 215 (313)
Q Consensus 141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~ 215 (313)
.+.||.+-|.|||.+|+..|+.|++||++|++....+-.. .+++ ...++|++++.|+++.++ ..+.+|..
T Consensus 211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~-V~tm~ea~~e~difVTtT----Gc~dii~~ 285 (434)
T KOG1370|consen 211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYE-VTTLEEAIREVDIFVTTT----GCKDIITG 285 (434)
T ss_pred eecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccE-eeeHHHhhhcCCEEEEcc----CCcchhhH
Confidence 3589999999999999999999999999999876655322 3344 468999999999999865 66889999
Q ss_pred HHHhhcCCCcEEEEcCCCCc
Q 021361 216 KVIDALGPSGILINIGRGAH 235 (313)
Q Consensus 216 ~~l~~mk~ga~~in~~rg~~ 235 (313)
+.|++||++++++|+|.-..
T Consensus 286 ~H~~~mk~d~IvCN~Ghfd~ 305 (434)
T KOG1370|consen 286 EHFDQMKNDAIVCNIGHFDT 305 (434)
T ss_pred HHHHhCcCCcEEeccccccc
Confidence 99999999999999987553
No 92
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.58 E-value=4.2e-07 Score=90.29 Aligned_cols=112 Identities=20% Similarity=0.347 Sum_probs=83.6
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc----------------c-------------ccccCCHHHHHhh
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA----------------N-------------YKYYTNIIDLASN 195 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~~l~~~ 195 (313)
++|||||.|.||+.+|..+...|++|+.||++++... + .....++++ +++
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 5899999999999999999999999999999875321 1 122456765 569
Q ss_pred CCeeEEecCCChHhhhccCHHHHhhcCCCcEE-EEcCCCCccCHHHHHHHHHh-CCceEEEccCCCCCC
Q 021361 196 CQILIVACSLTEETHHIVNRKVIDALGPSGIL-INIGRGAHIDEPELVSALLE-GRLAGAGLDVYENEP 262 (313)
Q Consensus 196 aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~-in~~rg~~vd~~al~~al~~-g~~~ga~lDV~~~EP 262 (313)
||+|+-++|.+.+.+..+-.+.-..++++++| +|+|.-.+ +.+..++.. .++ .++..|.+-|
T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~p~r~--~G~hff~Pa~ 150 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKHPERV--AGLHFFNPVP 150 (507)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCCcccE--EEEeecCCcc
Confidence 99999999999998887666555557899998 59877665 356666543 233 4556666554
No 93
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.58 E-value=7.5e-07 Score=83.07 Aligned_cols=135 Identities=16% Similarity=0.127 Sum_probs=84.8
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc----------------cc-------------ccccCCHHHHHhh
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD----------------AN-------------YKYYTNIIDLASN 195 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----------------~~-------------~~~~~~l~~l~~~ 195 (313)
++|+|||.|.||..+|..|...|++|.+||+++... .+ .....++++++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 479999999999999999999999999999986421 11 1234688889999
Q ss_pred CCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEE
Q 021361 196 CQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVV 275 (313)
Q Consensus 196 aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi 275 (313)
||+|+.++|...+.+..+-.+.-+..+++.++ ..+.. ......+.+.+..... ...|-+-+ |. .-.|=+.
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii-~ssts-~~~~~~la~~~~~~~~--~~~~hp~~-p~-----~~~~lve 152 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAELDALAPPHAIL-ASSTS-ALLASAFTEHLAGRER--CLVAHPIN-PP-----YLIPVVE 152 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCcceE-EEeCC-CCCHHHHHHhcCCccc--EEEEecCC-Cc-----ccCceEE
Confidence 99999999987655543333332334444444 43333 3456677777754332 23333322 21 1112366
Q ss_pred EcCCCCCCcHHHHHH
Q 021361 276 LLPHVGSDTEETSKA 290 (313)
Q Consensus 276 ~TPHia~~t~~~~~~ 290 (313)
++|+-+ .+.+..+.
T Consensus 153 iv~~~~-t~~~~~~~ 166 (308)
T PRK06129 153 VVPAPW-TAPATLAR 166 (308)
T ss_pred EeCCCC-CCHHHHHH
Confidence 777744 34444443
No 94
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.58 E-value=2.6e-07 Score=86.78 Aligned_cols=97 Identities=20% Similarity=0.216 Sum_probs=74.9
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----c--------c------ccccCCHHHHHhhCCeeEEecCC
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----A--------N------YKYYTNIIDLASNCQILIVACSL 205 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~--------~------~~~~~~l~~l~~~aDvv~l~~p~ 205 (313)
.+|+|||.|.||..+|..|...|++|.+|+|+++.. . + .....+++++++.+|+|++++|.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~~ 84 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVPS 84 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECch
Confidence 479999999999999999999999999999975421 0 1 12345788889999999999996
Q ss_pred ChHhhhccCHHHHhhcCCCcEEEEcCCC-CccC--HHHHHHHHHh
Q 021361 206 TEETHHIVNRKVIDALGPSGILINIGRG-AHID--EPELVSALLE 247 (313)
Q Consensus 206 ~~~t~~~i~~~~l~~mk~ga~~in~~rg-~~vd--~~al~~al~~ 247 (313)
. .+ ++.++.++++.++|+++.| ..-+ .+.+.+.+.+
T Consensus 85 ~-~~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328)
T PRK14618 85 K-AL-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328)
T ss_pred H-HH-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence 5 22 4566788999999999997 4333 4566666654
No 95
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.57 E-value=2.9e-07 Score=84.64 Aligned_cols=101 Identities=18% Similarity=0.231 Sum_probs=74.9
Q ss_pred CCCEEEEEcCChhHHHHHHHHHhcC----CcEEEECCCCccc-------ccccccCCHHHHHhhCCeeEEecCCChHhhh
Q 021361 143 SGKSVGIVGLGRIGTAIAKRVEAFG----CPISYHSRSEKSD-------ANYKYYTNIIDLASNCQILIVACSLTEETHH 211 (313)
Q Consensus 143 ~g~~vgiiG~G~iG~~~a~~l~~~g----~~V~~~~~~~~~~-------~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~ 211 (313)
++.+|||||+|+||.++++.|...| .+|.+++|+.... .+.....+..+++++||+|++++|.. ....
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~-~~~~ 80 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPK-DVAE 80 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHH-HHHH
Confidence 3468999999999999999999887 6799999875321 13444567888999999999999843 4444
Q ss_pred ccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361 212 IVNRKVIDALGPSGILINIGRGAHIDEPELVSALLE 247 (313)
Q Consensus 212 ~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~ 247 (313)
.+ .+....++++.++|++.-| +..+.+.+.+..
T Consensus 81 vl-~~l~~~~~~~~liIs~~aG--i~~~~l~~~~~~ 113 (279)
T PRK07679 81 AL-IPFKEYIHNNQLIISLLAG--VSTHSIRNLLQK 113 (279)
T ss_pred HH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCC
Confidence 44 3455567889999998655 356667666543
No 96
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.57 E-value=4.6e-07 Score=84.43 Aligned_cols=101 Identities=17% Similarity=0.213 Sum_probs=71.3
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc----------c--------------ccccCCHHHHHhhCCeeE
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA----------N--------------YKYYTNIIDLASNCQILI 200 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----------~--------------~~~~~~l~~l~~~aDvv~ 200 (313)
++|+|||.|.||..+|..|...|++|++||++.+... + .....++++.+++||+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 5899999999999999999999999999998764310 1 122456778899999999
Q ss_pred EecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361 201 VACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLE 247 (313)
Q Consensus 201 l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~ 247 (313)
+++|...+...-+-.+.-..++++++++....| +..+.+.+.+..
T Consensus 85 ~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~~ 129 (311)
T PRK06130 85 EAVPEKLELKRDVFARLDGLCDPDTIFATNTSG--LPITAIAQAVTR 129 (311)
T ss_pred EeccCcHHHHHHHHHHHHHhCCCCcEEEECCCC--CCHHHHHhhcCC
Confidence 999987654433333343446777766533333 346677777643
No 97
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.56 E-value=3.2e-07 Score=83.96 Aligned_cols=128 Identities=18% Similarity=0.300 Sum_probs=87.7
Q ss_pred ccccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361 139 GSKFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV 217 (313)
Q Consensus 139 ~~~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~ 217 (313)
+.++.||+|+|||. |.+|+.+|.+|...|+.|++|... ..++.+..++||+|+.+++. .+++....
T Consensus 153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~---------t~~l~~~~~~ADIVI~avg~----~~~v~~~~ 219 (284)
T PRK14179 153 NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR---------TRNLAEVARKADILVVAIGR----GHFVTKEF 219 (284)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC---------CCCHHHHHhhCCEEEEecCc----cccCCHHH
Confidence 45799999999999 999999999999999999998322 13689999999999999976 34466544
Q ss_pred HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHH
Q 021361 218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIE 297 (313)
Q Consensus 218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ 297 (313)
+|+|+++||+|--... +|++. =||-..+ .... --.+||==||--.-+..-+.+.+++
T Consensus 220 ---ik~GavVIDvgin~~~----------~gkl~---GDVdf~~------v~~~-a~~iTPVPGGVGp~T~a~L~~N~~~ 276 (284)
T PRK14179 220 ---VKEGAVVIDVGMNRDE----------NGKLI---GDVDFDE------VAEV-ASYITPVPGGVGPMTITMLMEQTYQ 276 (284)
T ss_pred ---ccCCcEEEEecceecC----------CCCee---cCccHHH------HHhh-ccEecCCCCCchHHHHHHHHHHHHH
Confidence 8999999999855432 34443 3552111 1111 1458887676555444444444444
Q ss_pred HHHHH
Q 021361 298 NLVAH 302 (313)
Q Consensus 298 ni~~~ 302 (313)
-.+++
T Consensus 277 a~~~~ 281 (284)
T PRK14179 277 AALRS 281 (284)
T ss_pred HHHHH
Confidence 44443
No 98
>PRK08507 prephenate dehydrogenase; Validated
Probab=98.56 E-value=7.2e-07 Score=81.79 Aligned_cols=94 Identities=17% Similarity=0.393 Sum_probs=67.1
Q ss_pred EEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCccc-----ccc-cccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361 146 SVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSD-----ANY-KYYTNIIDLASNCQILIVACSLTEETHHIVNRKV 217 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~-----~~~-~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~ 217 (313)
+|+|||+|.||+.+|+.|+..|. +|++||+++... .+. ....+.+++. +||+|++|+|... ....+ .+.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~-~~~~~-~~l 78 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDA-IIEIL-PKL 78 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHH-HHHHH-HHH
Confidence 79999999999999999998885 689999976532 121 1234677765 5999999999643 33344 345
Q ss_pred HhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361 218 IDALGPSGILINIGRGAHIDEPELVSALLE 247 (313)
Q Consensus 218 l~~mk~ga~~in~~rg~~vd~~al~~al~~ 247 (313)
.. ++++++++++|.- ...+.+.+.+
T Consensus 79 ~~-l~~~~iv~d~gs~----k~~i~~~~~~ 103 (275)
T PRK08507 79 LD-IKENTTIIDLGST----KAKIIESVPK 103 (275)
T ss_pred hc-cCCCCEEEECccc----hHHHHHHHHH
Confidence 56 8899999997653 3445555544
No 99
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.54 E-value=8.7e-07 Score=81.84 Aligned_cols=112 Identities=19% Similarity=0.279 Sum_probs=79.9
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc----------------c-------------ccccCCHHHHHhh
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA----------------N-------------YKYYTNIIDLASN 195 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~~l~~~ 195 (313)
++|||||.|.||..+|..+...|++|+.||++++... + .....++ +.+++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 4899999999999999999999999999999875421 0 0123566 55799
Q ss_pred CCeeEEecCCChHhhhccCHHHHhhc-CCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCC
Q 021361 196 CQILIVACSLTEETHHIVNRKVIDAL-GPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYEN 260 (313)
Q Consensus 196 aDvv~l~~p~~~~t~~~i~~~~l~~m-k~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~ 260 (313)
||+|+-++|.+.+.+..+-...-+.+ +++++|++.+.+- ...++..+++... ...++.-|.+
T Consensus 85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~--~~~~la~~~~~~~-r~~g~hf~~P 147 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSI--PIMKLAAATKRPG-RVLGLHFFNP 147 (286)
T ss_pred CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCC--CHHHHHhhcCCCc-cEEEEecCCC
Confidence 99999999999998887665444445 7899998876654 4444445443321 1235555554
No 100
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.50 E-value=2.1e-07 Score=76.30 Aligned_cols=94 Identities=19% Similarity=0.307 Sum_probs=70.1
Q ss_pred ccCCCEEEEEcCChhHHHHHHHHHhcCCc-EEEECCCCccccc-----------ccccCCHHHHHhhCCeeEEecCCChH
Q 021361 141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRSEKSDAN-----------YKYYTNIIDLASNCQILIVACSLTEE 208 (313)
Q Consensus 141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~~~~~~~-----------~~~~~~l~~l~~~aDvv~l~~p~~~~ 208 (313)
.++|+++.|||.|.+|+.++..|...|++ |++++|+.++... ...+.++.+.+.++|+|+.++|....
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence 68999999999999999999999999997 9999998754211 11245677789999999999986433
Q ss_pred hhhccCHHHHhhcCCCc-EEEEcCCCCccC
Q 021361 209 THHIVNRKVIDALGPSG-ILINIGRGAHID 237 (313)
Q Consensus 209 t~~~i~~~~l~~mk~ga-~~in~~rg~~vd 237 (313)
.+.++.++..++.. ++++.+...-++
T Consensus 89 ---~i~~~~~~~~~~~~~~v~Dla~Pr~i~ 115 (135)
T PF01488_consen 89 ---IITEEMLKKASKKLRLVIDLAVPRDID 115 (135)
T ss_dssp ---SSTHHHHTTTCHHCSEEEES-SS-SB-
T ss_pred ---ccCHHHHHHHHhhhhceeccccCCCCC
Confidence 77888877665443 888887654343
No 101
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.50 E-value=3.4e-07 Score=85.56 Aligned_cols=88 Identities=17% Similarity=0.361 Sum_probs=68.8
Q ss_pred EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----c--------------cccccCCHHHHHhhCCeeEEecCCC
Q 021361 146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----A--------------NYKYYTNIIDLASNCQILIVACSLT 206 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~--------------~~~~~~~l~~l~~~aDvv~l~~p~~ 206 (313)
+|+|||.|.||..+|..|...|++|.+|+|+++.. . +.....++++++++||+|++++|.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~- 81 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS- 81 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH-
Confidence 79999999999999999999999999999975321 1 122345788889999999999996
Q ss_pred hHhhhccCHHHHhhcCCCcEEEEcCCCCc
Q 021361 207 EETHHIVNRKVIDALGPSGILINIGRGAH 235 (313)
Q Consensus 207 ~~t~~~i~~~~l~~mk~ga~~in~~rg~~ 235 (313)
..++.++. +....+++++++|+++.|--
T Consensus 82 ~~~~~v~~-~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 82 QALREVLK-QLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred HHHHHHHH-HHHhhcCCCCEEEEEeeccc
Confidence 45565553 45566788999999975543
No 102
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.49 E-value=2.5e-07 Score=77.76 Aligned_cols=87 Identities=22% Similarity=0.360 Sum_probs=63.7
Q ss_pred EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-------------c------cccccCCHHHHHhhCCeeEEecCCC
Q 021361 146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-------------A------NYKYYTNIIDLASNCQILIVACSLT 206 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-------------~------~~~~~~~l~~l~~~aDvv~l~~p~~ 206 (313)
+|+|+|.|++|.++|..|...|.+|..|.|..+.. . ......+++++++.+|+|++++|..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ 80 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence 69999999999999999999999999999986421 0 1223578999999999999999964
Q ss_pred hHhhhccCHHHHhhcCCCcEEEEcCCCC
Q 021361 207 EETHHIVNRKVIDALGPSGILINIGRGA 234 (313)
Q Consensus 207 ~~t~~~i~~~~l~~mk~ga~~in~~rg~ 234 (313)
. .+.+ -++....++++..+|++..|=
T Consensus 81 ~-~~~~-~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 81 A-HREV-LEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp G-HHHH-HHHHTTTSHTT-EEEETS-SE
T ss_pred H-HHHH-HHHHhhccCCCCEEEEecCCc
Confidence 3 2333 334666678899999998764
No 103
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.47 E-value=7.1e-07 Score=88.53 Aligned_cols=114 Identities=17% Similarity=0.206 Sum_probs=82.9
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc----------------c-------------ccccCCHHHHHhh
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA----------------N-------------YKYYTNIIDLASN 195 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~~l~~~ 195 (313)
++|||||.|.||+.+|..+...|++|..||++++... + .....++++ +++
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~ 84 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD 84 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence 5899999999999999999999999999999865321 1 112456765 569
Q ss_pred CCeeEEecCCChHhhhccCHHHHhhcCCCcEEE-EcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCC
Q 021361 196 CQILIVACSLTEETHHIVNRKVIDALGPSGILI-NIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPE 263 (313)
Q Consensus 196 aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~i-n~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~ 263 (313)
||+|+.++|.+.+.+..+-.+.-+.+++++++. |+|.-.+ +.+.+.++.. ....++.-|.+-|.
T Consensus 85 aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~p-~r~~G~HFf~Papv 149 (503)
T TIGR02279 85 AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLARP-ERVAGLHFFNPAPV 149 (503)
T ss_pred CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCcc-cceEEEeccCcccc
Confidence 999999999988888876666556678888766 6655443 5666766432 23356666665553
No 104
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.45 E-value=8.3e-07 Score=81.44 Aligned_cols=80 Identities=13% Similarity=0.346 Sum_probs=68.1
Q ss_pred ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361 139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV 217 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~ 217 (313)
+..|+||++.|||.|. +|+.+|.+|...|+.|+++.++. .++.+.+++||+|+.+++. .+++.++.
T Consensus 153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t---------~~l~~~~~~ADIVIsAvg~----p~~i~~~~ 219 (286)
T PRK14175 153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS---------KDMASYLKDADVIVSAVGK----PGLVTKDV 219 (286)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc---------hhHHHHHhhCCEEEECCCC----CcccCHHH
Confidence 3469999999999999 99999999999999999887643 3688999999999999975 44677754
Q ss_pred HhhcCCCcEEEEcCCCC
Q 021361 218 IDALGPSGILINIGRGA 234 (313)
Q Consensus 218 l~~mk~ga~~in~~rg~ 234 (313)
+|+|+++||+|-..
T Consensus 220 ---vk~gavVIDvGi~~ 233 (286)
T PRK14175 220 ---VKEGAVIIDVGNTP 233 (286)
T ss_pred ---cCCCcEEEEcCCCc
Confidence 68999999999654
No 105
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.45 E-value=1.1e-07 Score=76.97 Aligned_cols=102 Identities=21% Similarity=0.321 Sum_probs=60.2
Q ss_pred CCEEEEEcCChhHHHHHHHHHhcCCcEEE-ECCCCcccc------cccccCCHHHHHhhCCeeEEecCCChHhhhccCHH
Q 021361 144 GKSVGIVGLGRIGTAIAKRVEAFGCPISY-HSRSEKSDA------NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRK 216 (313)
Q Consensus 144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~-~~~~~~~~~------~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~ 216 (313)
..+|||||.|++|..+++.|...|+.|.. |+|+..+.. +.....++++++.++|++++++|.+.- .. +.++
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDdaI-~~-va~~ 87 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDAI-AE-VAEQ 87 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCHH-HH-HHHH
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHHH-HH-HHHH
Confidence 46899999999999999999999999865 567653321 122345788899999999999997632 22 3333
Q ss_pred HHhh--cCCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 021361 217 VIDA--LGPSGILINIGRGAHIDEPELVSALLEGR 249 (313)
Q Consensus 217 ~l~~--mk~ga~~in~~rg~~vd~~al~~al~~g~ 249 (313)
.-.. .++|.+|+-+| +-...+-|.-+-+.|-
T Consensus 88 La~~~~~~~g~iVvHtS--Ga~~~~vL~p~~~~Ga 120 (127)
T PF10727_consen 88 LAQYGAWRPGQIVVHTS--GALGSDVLAPARERGA 120 (127)
T ss_dssp HHCC--S-TT-EEEES---SS--GGGGHHHHHTT-
T ss_pred HHHhccCCCCcEEEECC--CCChHHhhhhHHHCCC
Confidence 4333 68999999984 2234444444444443
No 106
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.44 E-value=7e-07 Score=87.45 Aligned_cols=107 Identities=13% Similarity=0.212 Sum_probs=91.0
Q ss_pred hHHHHHHHHHhcCCcEEEECCCCcccc----------cccccCCHHHHHhh---CCeeEEecCCChHhhhccCHHHHhhc
Q 021361 155 IGTAIAKRVEAFGCPISYHSRSEKSDA----------NYKYYTNIIDLASN---CQILIVACSLTEETHHIVNRKVIDAL 221 (313)
Q Consensus 155 iG~~~a~~l~~~g~~V~~~~~~~~~~~----------~~~~~~~l~~l~~~---aDvv~l~~p~~~~t~~~i~~~~l~~m 221 (313)
||+.||+.|...|++|.+|||++++.. +...+.+++++++. +|+|++++|..+.++.+++ +.+..|
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~-~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIE-QLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHH-HHHhcC
Confidence 799999999999999999999876421 24456799999885 8999999999999998884 588999
Q ss_pred CCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCC
Q 021361 222 GPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEP 262 (313)
Q Consensus 222 k~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP 262 (313)
.+|.++||.|....-|...+.+.+++..+.....=|...++
T Consensus 80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~ 120 (459)
T PRK09287 80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE 120 (459)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence 99999999999999999999999999888855555666554
No 107
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.44 E-value=8.4e-07 Score=80.54 Aligned_cols=97 Identities=14% Similarity=0.257 Sum_probs=73.3
Q ss_pred EEEEEcCChhHHHHHHHHHhcCCc---EEEECCCCcccc-------cccccCCHHHHHhhCCeeEEecCCChHhhhccCH
Q 021361 146 SVGIVGLGRIGTAIAKRVEAFGCP---ISYHSRSEKSDA-------NYKYYTNIIDLASNCQILIVACSLTEETHHIVNR 215 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~g~~---V~~~~~~~~~~~-------~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~ 215 (313)
+|||||+|+||+.+++.|...|.. +.+++|+.++.. +...+.+.+++++++|+|++++| ......++..
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~~ 80 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLRA 80 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHHH
Confidence 699999999999999999987854 578888765321 23345688899999999999999 4445555432
Q ss_pred HHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 021361 216 KVIDALGPSGILINIGRGAHIDEPELVSALLEG 248 (313)
Q Consensus 216 ~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g 248 (313)
+. ++++.++|.+. .-+..+.|.+.+..+
T Consensus 81 --l~-~~~~~~vis~~--ag~~~~~l~~~~~~~ 108 (258)
T PRK06476 81 --LR-FRPGQTVISVI--AATDRAALLEWIGHD 108 (258)
T ss_pred --hc-cCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence 22 57889999987 448888888887654
No 108
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.43 E-value=1.7e-06 Score=83.28 Aligned_cols=122 Identities=10% Similarity=0.133 Sum_probs=86.0
Q ss_pred EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc---------------------cccc--cCCHHHHHhhCCeeEEe
Q 021361 146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA---------------------NYKY--YTNIIDLASNCQILIVA 202 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~---------------------~~~~--~~~l~~l~~~aDvv~l~ 202 (313)
+|+|||+|.||..+|..+. .|++|++||++.++.. .... ..+..++.++||+|++|
T Consensus 2 kI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii~ 80 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVIIA 80 (388)
T ss_pred EEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEEe
Confidence 6999999999999997776 4999999999875421 1111 23367788999999999
Q ss_pred cCCChH----------hhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCc----cc
Q 021361 203 CSLTEE----------THHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPE----QM 268 (313)
Q Consensus 203 ~p~~~~----------t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~----~l 268 (313)
+|...+ .+..+ +.... +++|.++|+.|.-.+=-.+.+.+.+.+..+. |.+|...+. .+
T Consensus 81 Vpt~~~~k~~~~dl~~v~~v~-~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~------~~PE~l~~G~a~~d~ 152 (388)
T PRK15057 81 TPTDYDPKTNYFNTSSVESVI-KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENII------FSPEFLREGKALYDN 152 (388)
T ss_pred CCCCCccCCCCcChHHHHHHH-HHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEE------ECcccccCCcccccc
Confidence 996521 12222 23344 7999999999999988888888887654332 366765443 35
Q ss_pred CCCCcEEE
Q 021361 269 LGLNNVVL 276 (313)
Q Consensus 269 ~~~pnvi~ 276 (313)
...|++++
T Consensus 153 ~~p~rvv~ 160 (388)
T PRK15057 153 LHPSRIVI 160 (388)
T ss_pred cCCCEEEE
Confidence 55666654
No 109
>PRK07680 late competence protein ComER; Validated
Probab=98.43 E-value=1.1e-06 Score=80.56 Aligned_cols=97 Identities=15% Similarity=0.295 Sum_probs=73.3
Q ss_pred EEEEEcCChhHHHHHHHHHhcCC----cEEEECCCCccc-------ccccccCCHHHHHhhCCeeEEecCCChHhhhccC
Q 021361 146 SVGIVGLGRIGTAIAKRVEAFGC----PISYHSRSEKSD-------ANYKYYTNIIDLASNCQILIVACSLTEETHHIVN 214 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~g~----~V~~~~~~~~~~-------~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~ 214 (313)
+|||||+|.||+.+++.|...|. +|.+++|+.++. .+.....+..+++.++|+|++++|. .....++
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p-~~~~~vl- 79 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKP-LDIYPLL- 79 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCH-HHHHHHH-
Confidence 69999999999999999998883 689999986432 1333456788889999999999973 3445444
Q ss_pred HHHHhhcCCCcEEEEcCCCCccCHHHHHHHHH
Q 021361 215 RKVIDALGPSGILINIGRGAHIDEPELVSALL 246 (313)
Q Consensus 215 ~~~l~~mk~ga~~in~~rg~~vd~~al~~al~ 246 (313)
++....++++.++|+++-| +..+.|.+.+.
T Consensus 80 ~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~ 109 (273)
T PRK07680 80 QKLAPHLTDEHCLVSITSP--ISVEQLETLVP 109 (273)
T ss_pred HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 3355667888999999854 37777776654
No 110
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.42 E-value=1.9e-06 Score=89.52 Aligned_cols=130 Identities=17% Similarity=0.218 Sum_probs=89.7
Q ss_pred CEEEEEcCChhHHHHHHHHHhcC--CcEEEECCCCccc-----cccc--ccCCHHHHHhhCCeeEEecCCChHhhhccCH
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFG--CPISYHSRSEKSD-----ANYK--YYTNIIDLASNCQILIVACSLTEETHHIVNR 215 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g--~~V~~~~~~~~~~-----~~~~--~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~ 215 (313)
++|||||+|.||.++++.++..| .+|++||++.+.. .+.. ...+++++++++|+|++++|.. ....++.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl~- 81 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVLA- 81 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHHH-
Confidence 68999999999999999999988 4799999986542 1221 2356888899999999999953 4444443
Q ss_pred HHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCC----------CcccCCCCcEEEcCCCC
Q 021361 216 KVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEV----------PEQMLGLNNVVLLPHVG 281 (313)
Q Consensus 216 ~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~----------~~~l~~~pnvi~TPHia 281 (313)
+..+.++++.++++++..+..-.+.+.+.+....+ .+..+-|.. ...|+.-.+++++|+-.
T Consensus 82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~-----r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~ 152 (735)
T PRK14806 82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPA-----GFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAE 152 (735)
T ss_pred HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCC-----eEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCC
Confidence 34456788999999987654445555555543222 222344421 12477788899999754
No 111
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.41 E-value=3.1e-06 Score=78.07 Aligned_cols=136 Identities=17% Similarity=0.223 Sum_probs=97.9
Q ss_pred CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc----ccccccCCHHHHHh-hCCeeEEecCCChHhhhccCHHHH
Q 021361 144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD----ANYKYYTNIIDLAS-NCQILIVACSLTEETHHIVNRKVI 218 (313)
Q Consensus 144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~~l~~-~aDvv~l~~p~~~~t~~~i~~~~l 218 (313)
-++|||||+|++|+-+|+.+...|+.+..++|+.... .+...++.+.++++ .+|+|.+|+.. .++..++..--+
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlctsi-lsiekilatypf 130 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSI-LSIEKILATYPF 130 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEEehh-hhHHHHHHhcCc
Confidence 4689999999999999999999999999999987433 34455678888886 59999999863 244545544456
Q ss_pred hhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCC
Q 021361 219 DALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVG 281 (313)
Q Consensus 219 ~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia 281 (313)
+++|.|++|+++-.-+...-+++.+-|-+.--.-..=-.|.++. .++....+|=|++-=.++
T Consensus 131 qrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPks-vnh~wqglpfVydkvRig 192 (480)
T KOG2380|consen 131 QRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKS-VNHEWQGLPFVYDKVRIG 192 (480)
T ss_pred hhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCc-CCCccccCceEEEEeecc
Confidence 77999999999998888888888888865432223333344442 233455577666655444
No 112
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.38 E-value=4.2e-06 Score=82.60 Aligned_cols=177 Identities=13% Similarity=0.223 Sum_probs=106.7
Q ss_pred CceEEEeeCCCCCCHHHhhcCC-CceEEEEcCCCCCcCChhhhhcCCcEEEeCCCCC----------cHHHHHHHHHHHH
Q 021361 45 AIRAVVGDTKCGADAELIDSLP-TLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVL----------TDDVADLAVGLVL 113 (313)
Q Consensus 45 ~~~~i~~~~~~~~~~~~l~~~~-~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~----------~~~vAE~~l~~~l 113 (313)
++|+|+.-..+ +.+.++.++ +--+|....-..|.=-++.+.+++|.+....... -.++|+.+=....
T Consensus 64 ~adiIlkV~~P--~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAGy~Av 141 (511)
T TIGR00561 64 QSDIILKVNAP--SDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAGYRAI 141 (511)
T ss_pred cCCEEEEeCCC--CHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHHHHHH
Confidence 56877753332 455566665 4455555555445444678889999988743211 1233343321111
Q ss_pred -HHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccc--
Q 021361 114 -AVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKY-- 185 (313)
Q Consensus 114 -~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~-- 185 (313)
..++.+ |++............+.++.|+|+|.+|...++.++.+|.+|.++|++.... .+...
T Consensus 142 i~Aa~~l---------gr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~ 212 (511)
T TIGR00561 142 IEAAHEF---------GRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLE 212 (511)
T ss_pred HHHHHHh---------hhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEe
Confidence 111111 1111110011124568999999999999999999999999999999876432 11111
Q ss_pred ---------------cCC----------HHHHHhhCCeeEEecCCChH-hhhccCHHHHhhcCCCcEEEEcCC
Q 021361 186 ---------------YTN----------IIDLASNCQILIVACSLTEE-THHIVNRKVIDALGPSGILINIGR 232 (313)
Q Consensus 186 ---------------~~~----------l~~l~~~aDvv~l~~p~~~~-t~~~i~~~~l~~mk~ga~~in~~r 232 (313)
..+ +.+.++++|+|+.++-..-. ...++.++.++.||+|+++||++-
T Consensus 213 v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 213 LDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred ccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeee
Confidence 001 44556789999887721111 224788999999999999999974
No 113
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.37 E-value=3.1e-06 Score=77.77 Aligned_cols=99 Identities=15% Similarity=0.271 Sum_probs=72.9
Q ss_pred CEEEEEcCChhHHHHHHHHHhcC----CcEEEECCCCccc-------c-cccccCCHHHHHhhCCeeEEecCCChHhhhc
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFG----CPISYHSRSEKSD-------A-NYKYYTNIIDLASNCQILIVACSLTEETHHI 212 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g----~~V~~~~~~~~~~-------~-~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~ 212 (313)
.+|+|||+|+||+.+++.|...| .+|.+|+|+.... . ......+..++++++|+|++++|. .....+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp-~~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPP-LAVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCH-HHHHHH
Confidence 37999999999999999999887 6799998865321 1 122246788889999999999984 334443
Q ss_pred cCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361 213 VNRKVIDALGPSGILINIGRGAHIDEPELVSALLE 247 (313)
Q Consensus 213 i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~ 247 (313)
+ .+....++++..+|.+.-| +..+.|.+.+..
T Consensus 81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~~ 112 (277)
T PRK06928 81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITPG 112 (277)
T ss_pred H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCC
Confidence 3 3344556788899998877 677788887643
No 114
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.36 E-value=1.9e-06 Score=75.10 Aligned_cols=86 Identities=24% Similarity=0.305 Sum_probs=65.1
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-c------c-ccccCCHHHHHhhCCeeEEecCCChHhhhccCHH
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-A------N-YKYYTNIIDLASNCQILIVACSLTEETHHIVNRK 216 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-~------~-~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~ 216 (313)
++++|+|.|+||..+|++|...|++|.+-+++..+. . + .-...+.++..+.+|+|++++|+..... +.++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~--v~~~ 79 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPD--VLAE 79 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHh--HHHH
Confidence 579999999999999999999999998886655432 1 1 1123578899999999999999843322 3455
Q ss_pred HHhhcCCCcEEEEcCCC
Q 021361 217 VIDALGPSGILINIGRG 233 (313)
Q Consensus 217 ~l~~mk~ga~~in~~rg 233 (313)
..+.+. |.++|++.-.
T Consensus 80 l~~~~~-~KIvID~tnp 95 (211)
T COG2085 80 LRDALG-GKIVIDATNP 95 (211)
T ss_pred HHHHhC-CeEEEecCCC
Confidence 666666 8999998653
No 115
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.34 E-value=3.3e-06 Score=63.64 Aligned_cols=67 Identities=24% Similarity=0.406 Sum_probs=56.0
Q ss_pred cccCCCEEEEEcCChhHHHHHHHHHhc-CCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHH
Q 021361 140 SKFSGKSVGIVGLGRIGTAIAKRVEAF-GCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVI 218 (313)
Q Consensus 140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~-g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l 218 (313)
..+.+++++|+|.|.+|+.+++.+... +.+|.++|| |+++.+.+. .+.+.++..
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r---------------------di~i~~~~~----~~~~~~~~~ 73 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR---------------------DILVTATPA----GVPVLEEAT 73 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC---------------------CEEEEcCCC----CCCchHHHH
Confidence 457899999999999999999999998 567889988 999998875 344555567
Q ss_pred hhcCCCcEEEEcC
Q 021361 219 DALGPSGILINIG 231 (313)
Q Consensus 219 ~~mk~ga~~in~~ 231 (313)
..++++.++++++
T Consensus 74 ~~~~~~~~v~~~a 86 (86)
T cd05191 74 AKINEGAVVIDLA 86 (86)
T ss_pred HhcCCCCEEEecC
Confidence 8899999999864
No 116
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.33 E-value=5e-07 Score=79.83 Aligned_cols=127 Identities=13% Similarity=0.179 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHH--HhcCCcEE-EECCCCc
Q 021361 102 DDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRV--EAFGCPIS-YHSRSEK 178 (313)
Q Consensus 102 ~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l--~~~g~~V~-~~~~~~~ 178 (313)
...++|.+..+++..|++. .|. ..++++|||+|.+|+.+++.+ ...|+++. ++|+.+.
T Consensus 61 ~~~~gy~v~~l~~~~~~~l---------~~~----------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~ 121 (213)
T PRK05472 61 KRGVGYNVEELLEFIEKIL---------GLD----------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPE 121 (213)
T ss_pred CCCCCeeHHHHHHHHHHHh---------CCC----------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChh
Confidence 4445699999999888764 121 245899999999999999863 35788875 5676543
Q ss_pred cc----cc--ccccCCHHHHHhh--CCeeEEecCCChHh---hhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361 179 SD----AN--YKYYTNIIDLASN--CQILIVACSLTEET---HHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLE 247 (313)
Q Consensus 179 ~~----~~--~~~~~~l~~l~~~--aDvv~l~~p~~~~t---~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~ 247 (313)
.. .+ .....++.+++++ .|++++++|..... ..+.......-|....+.+|+.+|.+|+.++|..+|..
T Consensus 122 ~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l~~ 201 (213)
T PRK05472 122 KIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVELQT 201 (213)
T ss_pred hcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEechHHHHHH
Confidence 22 11 1223567788765 99999999987652 22333444455777789999999999999999999865
No 117
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=98.31 E-value=9.2e-06 Score=66.99 Aligned_cols=80 Identities=16% Similarity=0.290 Sum_probs=67.7
Q ss_pred ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361 139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV 217 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~ 217 (313)
+.+++||+|.|+|-+. +|+.++.+|...|+.|..+++.. .++++.+++||+|+.+++.. ++|+.+.
T Consensus 23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t---------~~l~~~v~~ADIVvsAtg~~----~~i~~~~ 89 (140)
T cd05212 23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT---------IQLQSKVHDADVVVVGSPKP----EKVPTEW 89 (140)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC---------cCHHHHHhhCCEEEEecCCC----CccCHHH
Confidence 5579999999999986 68999999999999999887643 26889999999999999753 5688755
Q ss_pred HhhcCCCcEEEEcCCCC
Q 021361 218 IDALGPSGILINIGRGA 234 (313)
Q Consensus 218 l~~mk~ga~~in~~rg~ 234 (313)
+|||++++|++...
T Consensus 90 ---ikpGa~Vidvg~~~ 103 (140)
T cd05212 90 ---IKPGATVINCSPTK 103 (140)
T ss_pred ---cCCCCEEEEcCCCc
Confidence 78999999998665
No 118
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=98.29 E-value=4.5e-06 Score=70.33 Aligned_cols=81 Identities=19% Similarity=0.390 Sum_probs=59.4
Q ss_pred ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361 139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV 217 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~ 217 (313)
+.+++||++.|||-+. +|+.++.+|...|+.|..+.... .++++.+++||+|+.++.- .++|..+
T Consensus 31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T---------~~l~~~~~~ADIVVsa~G~----~~~i~~~- 96 (160)
T PF02882_consen 31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT---------KNLQEITRRADIVVSAVGK----PNLIKAD- 96 (160)
T ss_dssp T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS---------SSHHHHHTTSSEEEE-SSS----TT-B-GG-
T ss_pred CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC---------CcccceeeeccEEeeeecc----ccccccc-
Confidence 4469999999999996 99999999999999998877644 3689999999999999964 5567765
Q ss_pred HhhcCCCcEEEEcCCCCc
Q 021361 218 IDALGPSGILINIGRGAH 235 (313)
Q Consensus 218 l~~mk~ga~~in~~rg~~ 235 (313)
.+|+|+++||+|.-..
T Consensus 97 --~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 97 --WIKPGAVVIDVGINYV 112 (160)
T ss_dssp --GS-TTEEEEE--CEEE
T ss_pred --cccCCcEEEecCCccc
Confidence 4699999999987665
No 119
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.28 E-value=6.3e-06 Score=75.52 Aligned_cols=80 Identities=21% Similarity=0.398 Sum_probs=66.7
Q ss_pred ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361 139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV 217 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~ 217 (313)
+.+++||++.|||.|. +|+.+|.+|...|+.|+++.+.. .++++.+++||+|+.+++- .+++..
T Consensus 154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T---------~~l~~~~~~ADIvi~avG~----p~~v~~-- 218 (285)
T PRK10792 154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT---------KNLRHHVRNADLLVVAVGK----PGFIPG-- 218 (285)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC---------CCHHHHHhhCCEEEEcCCC----cccccH--
Confidence 3478999999999999 99999999999999999887543 3699999999999999953 335666
Q ss_pred HhhcCCCcEEEEcCCCC
Q 021361 218 IDALGPSGILINIGRGA 234 (313)
Q Consensus 218 l~~mk~ga~~in~~rg~ 234 (313)
+.+|+|+++||+|--.
T Consensus 219 -~~vk~gavVIDvGin~ 234 (285)
T PRK10792 219 -EWIKPGAIVIDVGINR 234 (285)
T ss_pred -HHcCCCcEEEEccccc
Confidence 4479999999998443
No 120
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=98.24 E-value=1.2e-05 Score=69.55 Aligned_cols=89 Identities=18% Similarity=0.262 Sum_probs=67.6
Q ss_pred ccccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCccc------cccccc--CC----HHHHHhhCCeeEEec
Q 021361 137 ELGSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSD------ANYKYY--TN----IIDLASNCQILIVAC 203 (313)
Q Consensus 137 ~~~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~------~~~~~~--~~----l~~l~~~aDvv~l~~ 203 (313)
+.+.++.||++.|||-+. +|+.+|.+|...|+.|+.++.+.... ..-... .+ +.+.+++||+|+.++
T Consensus 55 ~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAv 134 (197)
T cd01079 55 PYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGV 134 (197)
T ss_pred ccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEcc
Confidence 457789999999999997 68999999999999999986432110 000011 12 778999999999999
Q ss_pred CCChHhhhc-cCHHHHhhcCCCcEEEEcCC
Q 021361 204 SLTEETHHI-VNRKVIDALGPSGILINIGR 232 (313)
Q Consensus 204 p~~~~t~~~-i~~~~l~~mk~ga~~in~~r 232 (313)
+- .++ +..+. .|+|+++||+|-
T Consensus 135 G~----~~~~i~~d~---ik~GavVIDVGi 157 (197)
T cd01079 135 PS----PNYKVPTEL---LKDGAICINFAS 157 (197)
T ss_pred CC----CCCccCHHH---cCCCcEEEEcCC
Confidence 74 455 77755 689999999983
No 121
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.23 E-value=5.2e-06 Score=76.06 Aligned_cols=79 Identities=19% Similarity=0.372 Sum_probs=66.6
Q ss_pred ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361 139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV 217 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~ 217 (313)
+.++.||++.|||.|. +|+.+|.+|...|+.|+++.... .++.+..++||+|+.++.- .+++..+
T Consensus 159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T---------~~l~~~~~~ADIvv~AvG~----p~~i~~~- 224 (287)
T PRK14176 159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT---------DDLKKYTLDADILVVATGV----KHLIKAD- 224 (287)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC---------CCHHHHHhhCCEEEEccCC----ccccCHH-
Confidence 4478999999999999 99999999999999998887532 3689999999999998853 3567765
Q ss_pred HhhcCCCcEEEEcCCC
Q 021361 218 IDALGPSGILINIGRG 233 (313)
Q Consensus 218 l~~mk~ga~~in~~rg 233 (313)
.+|+|+++||+|--
T Consensus 225 --~vk~gavVIDvGin 238 (287)
T PRK14176 225 --MVKEGAVIFDVGIT 238 (287)
T ss_pred --HcCCCcEEEEeccc
Confidence 47899999999854
No 122
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.21 E-value=6.8e-06 Score=75.64 Aligned_cols=80 Identities=14% Similarity=0.301 Sum_probs=66.5
Q ss_pred ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361 139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV 217 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~ 217 (313)
+..+.||++.|||.|. +|+.++..|...|+.|+++++.. .++.+.++++|+|+.+++. .+++..+.
T Consensus 154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t---------~~L~~~~~~aDIvI~AtG~----~~~v~~~~ 220 (283)
T PRK14192 154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT---------QNLPELVKQADIIVGAVGK----PELIKKDW 220 (283)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc---------hhHHHHhccCCEEEEccCC----CCcCCHHH
Confidence 4468999999999998 99999999999999999888732 3688888999999999963 22577644
Q ss_pred HhhcCCCcEEEEcCCCC
Q 021361 218 IDALGPSGILINIGRGA 234 (313)
Q Consensus 218 l~~mk~ga~~in~~rg~ 234 (313)
+|+|++++|++-..
T Consensus 221 ---lk~gavViDvg~n~ 234 (283)
T PRK14192 221 ---IKQGAVVVDAGFHP 234 (283)
T ss_pred ---cCCCCEEEEEEEee
Confidence 79999999998554
No 123
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.21 E-value=5.4e-06 Score=75.98 Aligned_cols=80 Identities=18% Similarity=0.299 Sum_probs=67.0
Q ss_pred ccccCCCEEEEEcCC-hhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361 139 GSKFSGKSVGIVGLG-RIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV 217 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~ 217 (313)
+.++.||++.|||-| .+|+.+|.+|...|+.|+++.... .++.+.+++||+|+.+++. .+++..+.
T Consensus 152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t---------~~l~~~~~~ADIvV~AvG~----p~~i~~~~ 218 (285)
T PRK14191 152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT---------KDLSFYTQNADIVCVGVGK----PDLIKASM 218 (285)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc---------HHHHHHHHhCCEEEEecCC----CCcCCHHH
Confidence 457899999999999 899999999999999998875322 3578899999999999953 55778765
Q ss_pred HhhcCCCcEEEEcCCCC
Q 021361 218 IDALGPSGILINIGRGA 234 (313)
Q Consensus 218 l~~mk~ga~~in~~rg~ 234 (313)
+|+|+++||+|-..
T Consensus 219 ---vk~GavVIDvGi~~ 232 (285)
T PRK14191 219 ---VKKGAVVVDIGINR 232 (285)
T ss_pred ---cCCCcEEEEeeccc
Confidence 49999999998655
No 124
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.20 E-value=4.5e-06 Score=72.18 Aligned_cols=132 Identities=14% Similarity=0.185 Sum_probs=78.5
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc------------cc-------------ccccCCHHHHHhhCCee
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD------------AN-------------YKYYTNIIDLASNCQIL 199 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------------~~-------------~~~~~~l~~l~~~aDvv 199 (313)
.+|+|||+|-+|-.+|..|...|++|+++|..++.. .+ .....+.++.+++||++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 479999999999999999999999999999876421 00 12346788889999999
Q ss_pred EEecCCChHhhhccC--------HHHHhhcCCCcEEEEcCCCCccCHHHHH-HHHHhCCceEEEcc-CCCCCCCCCc---
Q 021361 200 IVACSLTEETHHIVN--------RKVIDALGPSGILINIGRGAHIDEPELV-SALLEGRLAGAGLD-VYENEPEVPE--- 266 (313)
Q Consensus 200 ~l~~p~~~~t~~~i~--------~~~l~~mk~ga~~in~~rg~~vd~~al~-~al~~g~~~ga~lD-V~~~EP~~~~--- 266 (313)
++|+|......+..| +...+.++++.++|.-|.-.+=-.+.+. ..|++......-.+ +|-+|=+.+.
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a~ 160 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRAI 160 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTSHH
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCCcc
Confidence 999984333232222 3456778999999999988876666444 44443322110111 2466665543
Q ss_pred -ccCCCCcEEE
Q 021361 267 -QMLGLNNVVL 276 (313)
Q Consensus 267 -~l~~~pnvi~ 276 (313)
.+...|++++
T Consensus 161 ~d~~~~~rvV~ 171 (185)
T PF03721_consen 161 EDFRNPPRVVG 171 (185)
T ss_dssp HHHHSSSEEEE
T ss_pred hhccCCCEEEE
Confidence 4777888874
No 125
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.20 E-value=5.9e-06 Score=75.46 Aligned_cols=80 Identities=16% Similarity=0.290 Sum_probs=67.9
Q ss_pred ccccCCCEEEEEcCC-hhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361 139 GSKFSGKSVGIVGLG-RIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV 217 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~ 217 (313)
+.+++|+++.|+|.+ ..|+.+|.+|...|+.|..+.+.. .++.+.+++||+|+.+++. .+++.++.
T Consensus 147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t---------~~L~~~~~~ADIvI~Avgk----~~lv~~~~ 213 (279)
T PRK14178 147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT---------ENLKAELRQADILVSAAGK----AGFITPDM 213 (279)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh---------hHHHHHHhhCCEEEECCCc----ccccCHHH
Confidence 447999999999999 899999999999999998876543 3689999999999999964 26788876
Q ss_pred HhhcCCCcEEEEcCCCC
Q 021361 218 IDALGPSGILINIGRGA 234 (313)
Q Consensus 218 l~~mk~ga~~in~~rg~ 234 (313)
+|+|+++||+|-..
T Consensus 214 ---vk~GavVIDVgi~~ 227 (279)
T PRK14178 214 ---VKPGATVIDVGINQ 227 (279)
T ss_pred ---cCCCcEEEEeeccc
Confidence 49999999998544
No 126
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=98.20 E-value=7.1e-06 Score=77.55 Aligned_cols=90 Identities=17% Similarity=0.184 Sum_probs=71.2
Q ss_pred HHHHHHHHHhcCCcEEEECCCCcc----------cccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCc
Q 021361 156 GTAIAKRVEAFGCPISYHSRSEKS----------DANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSG 225 (313)
Q Consensus 156 G~~~a~~l~~~g~~V~~~~~~~~~----------~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga 225 (313)
|..+|..|...|++|++|||+... ..+.....+..+++++||+|++++|....++.++. +....+++++
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~-~L~~~L~~g~ 110 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIAK-NILPHLPENA 110 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHHH-HHHhhCCCCC
Confidence 789999999999999999997641 12344456888899999999999997655777764 6778899999
Q ss_pred EEEEcCCCCccCH-HHHHHHHH
Q 021361 226 ILINIGRGAHIDE-PELVSALL 246 (313)
Q Consensus 226 ~~in~~rg~~vd~-~al~~al~ 246 (313)
++||++.+..... +.+.+.+.
T Consensus 111 IVId~ST~~~~~~s~~l~~~l~ 132 (342)
T PRK12557 111 VICNTCTVSPVVLYYSLEGELR 132 (342)
T ss_pred EEEEecCCCHHHHHHHHHHHhc
Confidence 9999999887665 55666664
No 127
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.16 E-value=5.4e-06 Score=75.55 Aligned_cols=90 Identities=18% Similarity=0.341 Sum_probs=68.0
Q ss_pred ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc------cccccccCCHHHHHhhCCeeEEecCCChHhhhccC
Q 021361 141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS------DANYKYYTNIIDLASNCQILIVACSLTEETHHIVN 214 (313)
Q Consensus 141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~------~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~ 214 (313)
-|+||+|+|||||+-|++=|..|+..|.+|++=-|.... ..+.+ ..+.+|+.+++|+|++-+|..-+ ..++.
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~-V~~v~ea~k~ADvim~L~PDe~q-~~vy~ 92 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFK-VYTVEEAAKRADVVMILLPDEQQ-KEVYE 92 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCE-eecHHHHhhcCCEEEEeCchhhH-HHHHH
Confidence 489999999999999999999999999998765444332 12333 45899999999999999996433 33555
Q ss_pred HHHHhhcCCCcEEEEcCCC
Q 021361 215 RKVIDALGPSGILINIGRG 233 (313)
Q Consensus 215 ~~~l~~mk~ga~~in~~rg 233 (313)
.+.-..|++|+. +-.|.|
T Consensus 93 ~~I~p~Lk~G~a-L~FaHG 110 (338)
T COG0059 93 KEIAPNLKEGAA-LGFAHG 110 (338)
T ss_pred HHhhhhhcCCce-EEeccc
Confidence 567778888874 344444
No 128
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.13 E-value=3.5e-06 Score=72.53 Aligned_cols=98 Identities=20% Similarity=0.291 Sum_probs=70.8
Q ss_pred EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc----------------c-------------ccccCCHHHHHhhC
Q 021361 146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA----------------N-------------YKYYTNIIDLASNC 196 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~~l~~~a 196 (313)
+|+|||.|.||+.+|..+...|++|..||++++... + .....+++++. +|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 699999999999999999999999999999875310 0 11246788888 99
Q ss_pred CeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHH
Q 021361 197 QILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALL 246 (313)
Q Consensus 197 Dvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~ 246 (313)
|+|+=++|-+-+.+.-+-++.-+.++++++|...+ +-+....|...+.
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnT--Ssl~i~~la~~~~ 127 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNT--SSLSISELAAALS 127 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE----SSS-HHHHHTTSS
T ss_pred heehhhccccHHHHHHHHHHHHHHhCCCceEEecC--CCCCHHHHHhccC
Confidence 99999999988888777777777788999876653 3356666766664
No 129
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.11 E-value=2.6e-05 Score=71.42 Aligned_cols=128 Identities=18% Similarity=0.294 Sum_probs=88.1
Q ss_pred ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361 139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV 217 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~ 217 (313)
+.++.||++.|||-+. +|+.+|.+|...|+.|+.+.... .++.+..++||+|+.+++- .+++..+.
T Consensus 152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T---------~~l~~~~~~ADIvI~AvG~----~~~i~~~~ 218 (284)
T PRK14170 152 GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT---------KDLPQVAKEADILVVATGL----AKFVKKDY 218 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEecCC----cCccCHHH
Confidence 4579999999999987 69999999999999998876432 3689999999999999964 55788765
Q ss_pred HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHH
Q 021361 218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIE 297 (313)
Q Consensus 218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ 297 (313)
.|+|+++||+|--.+. +|++. =||-.. - .... --.+||=-||--.-+..-..+.+++
T Consensus 219 ---vk~GavVIDvGin~~~----------~gkl~---GDvdfe-~-----~~~~-a~~iTPVPGGVGpvT~a~L~~N~~~ 275 (284)
T PRK14170 219 ---IKPGAIVIDVGMDRDE----------NNKLC---GDVDFD-D-----VVEE-AGFITPVPGGVGPMTITMLLANTLK 275 (284)
T ss_pred ---cCCCCEEEEccCcccC----------CCCee---cccchH-H-----HHhh-ccEecCCCCChHHHHHHHHHHHHHH
Confidence 6899999999965531 35543 344111 0 1111 2367887777655544444444444
Q ss_pred HHHHH
Q 021361 298 NLVAH 302 (313)
Q Consensus 298 ni~~~ 302 (313)
-.++.
T Consensus 276 a~~~~ 280 (284)
T PRK14170 276 AAKRI 280 (284)
T ss_pred HHHHH
Confidence 44443
No 130
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.11 E-value=4.5e-06 Score=81.12 Aligned_cols=94 Identities=19% Similarity=0.326 Sum_probs=69.6
Q ss_pred ccCCCEEEEEcCChhHHHHHHHHHhcC-CcEEEECCCCcccc------ccc--ccCCHHHHHhhCCeeEEecCCChHhhh
Q 021361 141 KFSGKSVGIVGLGRIGTAIAKRVEAFG-CPISYHSRSEKSDA------NYK--YYTNIIDLASNCQILIVACSLTEETHH 211 (313)
Q Consensus 141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~------~~~--~~~~l~~l~~~aDvv~l~~p~~~~t~~ 211 (313)
.+.|++|+|||.|.||+.+++.|...| .+|++++|+.+... +.. ...++.+.+.++|+|+.+++. ...
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s---~~~ 253 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGA---PHP 253 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCC---CCc
Confidence 478999999999999999999999999 67999999875421 111 124567788899999998763 455
Q ss_pred ccCHHHHhhcC----CCcEEEEcCCCCccC
Q 021361 212 IVNRKVIDALG----PSGILINIGRGAHID 237 (313)
Q Consensus 212 ~i~~~~l~~mk----~ga~~in~~rg~~vd 237 (313)
+++++.++.+. ...+++|.+...=+|
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~Prdid 283 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAVPRDVD 283 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 78888777652 235888887543333
No 131
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.11 E-value=2.1e-05 Score=70.57 Aligned_cols=101 Identities=17% Similarity=0.236 Sum_probs=69.0
Q ss_pred CCCEEEEEcCChhHHHHHHHHHhcC---Cc-EEEECCC-Cccc------ccccccCCHHHHHhhCCeeEEecCCChHhhh
Q 021361 143 SGKSVGIVGLGRIGTAIAKRVEAFG---CP-ISYHSRS-EKSD------ANYKYYTNIIDLASNCQILIVACSLTEETHH 211 (313)
Q Consensus 143 ~g~~vgiiG~G~iG~~~a~~l~~~g---~~-V~~~~~~-~~~~------~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~ 211 (313)
...+|||||.|.||+.+++.+...| .+ +++++|+ .+.. .+.....+.+++++++|+|++++|.. ..+.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~-~~~~ 81 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS-AHEE 81 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH-HHHH
Confidence 3578999999999999999998766 23 6777764 2221 12334567889999999999999953 3333
Q ss_pred ccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 021361 212 IVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEG 248 (313)
Q Consensus 212 ~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g 248 (313)
++ ++.-..++ +.++|.++-| ++.+.|.+.+..+
T Consensus 82 v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~ 114 (245)
T PRK07634 82 LL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG 114 (245)
T ss_pred HH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence 33 22222344 6788998766 5666777766544
No 132
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.10 E-value=9.2e-06 Score=73.97 Aligned_cols=96 Identities=19% Similarity=0.265 Sum_probs=68.2
Q ss_pred CEEEEEcCChhHHHHHHHHHhcC---CcEEEECCCCccc------ccccccCCHHHHHhhCCeeEEecCCChHhhhccCH
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFG---CPISYHSRSEKSD------ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNR 215 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g---~~V~~~~~~~~~~------~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~ 215 (313)
.+|+|||+|.||+.+++.+...| .+|.+++|+.+.. .+.....+.++++.++|+|++++|.. ..+.++..
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~-~~~~v~~~ 81 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQ-VMEEVLSE 81 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHH-HHHHHHHH
Confidence 47999999999999999999888 6799999986532 13334567888899999999999843 33433322
Q ss_pred HHHhhcCCCcEEEEcCCCCccCHHHHHHHHH
Q 021361 216 KVIDALGPSGILINIGRGAHIDEPELVSALL 246 (313)
Q Consensus 216 ~~l~~mk~ga~~in~~rg~~vd~~al~~al~ 246 (313)
....+ +..+|.+.-|- ..+.+.+.+.
T Consensus 82 -l~~~~--~~~vvs~~~gi--~~~~l~~~~~ 107 (267)
T PRK11880 82 -LKGQL--DKLVVSIAAGV--TLARLERLLG 107 (267)
T ss_pred -HHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence 22333 46777776553 5667776654
No 133
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.10 E-value=6.3e-05 Score=70.97 Aligned_cols=154 Identities=16% Similarity=0.262 Sum_probs=116.3
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc----------cccccCCHHHH---HhhCCeeEEecCCChHhhh
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA----------NYKYYTNIIDL---ASNCQILIVACSLTEETHH 211 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----------~~~~~~~l~~l---~~~aDvv~l~~p~~~~t~~ 211 (313)
..||+||+|.||+.+|......|++|.+|+|+.++.. ....+.+++|+ ++.-.-|++++-.-.....
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~ 83 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA 83 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence 4699999999999999999999999999999986532 12234577776 4567788888855332344
Q ss_pred ccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcC-CCCCCcHHHHHH
Q 021361 212 IVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLP-HVGSDTEETSKA 290 (313)
Q Consensus 212 ~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TP-Hia~~t~~~~~~ 290 (313)
.|+ +.+..|.+|-++|+-|-...-|...-.++|.+..|...+.-|...|--.. --| =|=|.+.++++.
T Consensus 84 ~I~-~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~----------~GPSiMpGG~~eay~~ 152 (473)
T COG0362 84 VIE-QLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGAR----------HGPSIMPGGQKEAYEL 152 (473)
T ss_pred HHH-HHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccc----------cCCCcCCCCCHHHHHH
Confidence 444 47888999999999999999999999999999999999999998886321 111 134678888876
Q ss_pred HHHHHHHHHHHHHcCCCCCC
Q 021361 291 MADLVIENLVAHFSNKPLLT 310 (313)
Q Consensus 291 ~~~~~~~ni~~~~~g~~~~~ 310 (313)
...+ .+.|-+-..|+|=+.
T Consensus 153 v~pi-l~~IaAk~~g~pCc~ 171 (473)
T COG0362 153 VAPI-LTKIAAKVDGEPCCT 171 (473)
T ss_pred HHHH-HHHHHhhcCCCCcee
Confidence 6554 445555556776543
No 134
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.10 E-value=2e-05 Score=72.32 Aligned_cols=122 Identities=20% Similarity=0.311 Sum_probs=86.3
Q ss_pred ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361 139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV 217 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~ 217 (313)
+.++.||++.|||-+. +|+.+|.+|...|+.|+.+.... .++.+.+++||+|+.++.. .+++..+.
T Consensus 153 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t---------~~l~~~~~~ADIvI~AvG~----p~~i~~~~ 219 (284)
T PRK14190 153 NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT---------KNLAELTKQADILIVAVGK----PKLITADM 219 (284)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc---------hhHHHHHHhCCEEEEecCC----CCcCCHHH
Confidence 4579999999999987 79999999999999998875422 3688999999999999954 45788876
Q ss_pred HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHH
Q 021361 218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVI 296 (313)
Q Consensus 218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~ 296 (313)
+ |+|+++||+|.-.+. +|++ .=||-..+ .... --.+||--||--.-+..-..+.++
T Consensus 220 i---k~gavVIDvGi~~~~----------~gkl---~GDvd~e~------v~~~-a~~iTPVPGGVGpvT~a~L~~N~~ 275 (284)
T PRK14190 220 V---KEGAVVIDVGVNRLE----------NGKL---CGDVDFDN------VKEK-ASYITPVPGGVGPMTITMLMHNTV 275 (284)
T ss_pred c---CCCCEEEEeeccccC----------CCCe---eccCcHHH------Hhhh-ceEecCCCCCChHHHHHHHHHHHH
Confidence 4 899999999976531 3443 34552111 1111 246899878766544433333333
No 135
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=98.10 E-value=5e-06 Score=70.69 Aligned_cols=92 Identities=15% Similarity=0.342 Sum_probs=67.0
Q ss_pred cccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----cc---cc-----------------------ccCC
Q 021361 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----AN---YK-----------------------YYTN 188 (313)
Q Consensus 140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~---~~-----------------------~~~~ 188 (313)
..+...+|.|+|.|+.|+..++.++++|++|..+|...... .. .. ....
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESN 95 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHH
Confidence 46788999999999999999999999999999998765421 00 00 0124
Q ss_pred HHHHHhhCCeeEEecC-CChHhhhccCHHHHhhcCCCcEEEEcC
Q 021361 189 IIDLASNCQILIVACS-LTEETHHIVNRKVIDALGPSGILINIG 231 (313)
Q Consensus 189 l~~l~~~aDvv~l~~p-~~~~t~~~i~~~~l~~mk~ga~~in~~ 231 (313)
+.+.++.+|+|+.++- .....-.++.++.++.||++++++|++
T Consensus 96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 7788899999987544 344566789999999999999999986
No 136
>PLN00203 glutamyl-tRNA reductase
Probab=98.09 E-value=4.8e-06 Score=82.69 Aligned_cols=90 Identities=20% Similarity=0.411 Sum_probs=67.9
Q ss_pred ccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcccc-------cc----cccCCHHHHHhhCCeeEEecCCChH
Q 021361 141 KFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDA-------NY----KYYTNIIDLASNCQILIVACSLTEE 208 (313)
Q Consensus 141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~-------~~----~~~~~l~~l~~~aDvv~l~~p~~~~ 208 (313)
.+.+++|+|||.|.||+.+++.|...|+ +|++++|+.+... +. ....++.+.+.++|+|+.++| .
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~---s 339 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTS---S 339 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccC---C
Confidence 4789999999999999999999999997 5999999875421 11 112456778899999999876 4
Q ss_pred hhhccCHHHHhhcCCC-------cEEEEcCCC
Q 021361 209 THHIVNRKVIDALGPS-------GILINIGRG 233 (313)
Q Consensus 209 t~~~i~~~~l~~mk~g-------a~~in~~rg 233 (313)
...++.++.++.++++ -+|||.+=.
T Consensus 340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvP 371 (519)
T PLN00203 340 ETPLFLKEHVEALPPASDTVGGKRLFVDISVP 371 (519)
T ss_pred CCCeeCHHHHHHhhhcccccCCCeEEEEeCCC
Confidence 4567888888876432 367777643
No 137
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.09 E-value=9.6e-06 Score=71.87 Aligned_cols=87 Identities=18% Similarity=0.241 Sum_probs=62.0
Q ss_pred EEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCcccc-------------cc--c-ccCCHHHHHhhCCeeEEecCCChH
Q 021361 146 SVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEKSDA-------------NY--K-YYTNIIDLASNCQILIVACSLTEE 208 (313)
Q Consensus 146 ~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-------------~~--~-~~~~l~~l~~~aDvv~l~~p~~~~ 208 (313)
+|+||| .|.||+.+++.|...|.+|.+++|+++... +. . ...+..+.++++|+|++++|.. .
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~-~ 80 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWD-H 80 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHH-H
Confidence 699997 899999999999999999999998764321 10 0 1236678899999999999954 2
Q ss_pred hhhccCHHHHhhcCCCcEEEEcCCCCc
Q 021361 209 THHIVNRKVIDALGPSGILINIGRGAH 235 (313)
Q Consensus 209 t~~~i~~~~l~~mk~ga~~in~~rg~~ 235 (313)
...++ ++.-..++ +.++|++.-|--
T Consensus 81 ~~~~l-~~l~~~l~-~~vvI~~~ngi~ 105 (219)
T TIGR01915 81 VLKTL-ESLRDELS-GKLVISPVVPLA 105 (219)
T ss_pred HHHHH-HHHHHhcc-CCEEEEeccCce
Confidence 33333 22223344 589999976643
No 138
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.08 E-value=2.2e-05 Score=77.74 Aligned_cols=178 Identities=15% Similarity=0.238 Sum_probs=105.8
Q ss_pred CceEEEeeCCCCCCHHHhhcCCC-ceEEEEcCCCCCcCChhhhhcCCcEEEeCCCCC----------cHHHHHHHHHHHH
Q 021361 45 AIRAVVGDTKCGADAELIDSLPT-LEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVL----------TDDVADLAVGLVL 113 (313)
Q Consensus 45 ~~~~i~~~~~~~~~~~~l~~~~~-Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~----------~~~vAE~~l~~~l 113 (313)
++|+|+.-..+ +.+.++.++. --++.......|.=-++.+.++||.+....... -.+.|+.+=
T Consensus 65 ~~diilkV~~P--~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAG---- 138 (509)
T PRK09424 65 QSDIILKVNAP--SDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAG---- 138 (509)
T ss_pred cCCEEEEeCCC--CHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhH----
Confidence 57888854332 4555676654 445565555555445678889999888732211 112333222
Q ss_pred HHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----cccccc--
Q 021361 114 AVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYY-- 186 (313)
Q Consensus 114 ~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~-- 186 (313)
+|-+..+.. .-++.............|.+|.|+|.|.+|...++.++.+|.+|.++|++++.. .+.+..
T Consensus 139 --y~Av~~aa~--~~~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i 214 (509)
T PRK09424 139 --YRAVIEAAH--EFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLEL 214 (509)
T ss_pred --HHHHHHHHH--HhcccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEe
Confidence 111111111 112221111111124579999999999999999999999999999999887532 222210
Q ss_pred -----------------CCH--------HHHHhhCCeeEEecCCChH-hhhccCHHHHhhcCCCcEEEEcCC
Q 021361 187 -----------------TNI--------IDLASNCQILIVACSLTEE-THHIVNRKVIDALGPSGILINIGR 232 (313)
Q Consensus 187 -----------------~~l--------~~l~~~aDvv~l~~p~~~~-t~~~i~~~~l~~mk~ga~~in~~r 232 (313)
.+. .+.++++|+|+.+...... ...++.++.++.||+|++++++|=
T Consensus 215 ~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 215 DFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred ccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 010 1112469999998864321 223556789999999999999974
No 139
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.08 E-value=1.2e-05 Score=73.35 Aligned_cols=101 Identities=21% Similarity=0.268 Sum_probs=69.9
Q ss_pred EEEEEcCChhHHHHHHHHHhc--CCcE-EEECCCCccc------ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHH
Q 021361 146 SVGIVGLGRIGTAIAKRVEAF--GCPI-SYHSRSEKSD------ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRK 216 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~--g~~V-~~~~~~~~~~------~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~ 216 (313)
+|||||+|.||+.+++.+... ++++ .++|++.+.. .+...+.++++++.++|+|+.|+|...... +.
T Consensus 3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~~~~--~~-- 78 (265)
T PRK13304 3 KIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNAVEE--VV-- 78 (265)
T ss_pred EEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHHHHH--HH--
Confidence 799999999999999998865 4664 5788876432 123346789999999999999987432211 11
Q ss_pred HHhhcCCCcEEEEcCCCCccCH---HHHHHHHHhCCce
Q 021361 217 VIDALGPSGILINIGRGAHIDE---PELVSALLEGRLA 251 (313)
Q Consensus 217 ~l~~mk~ga~~in~~rg~~vd~---~al~~al~~g~~~ 251 (313)
...++.|.-++..+.|.+.|. +.|.++.++++..
T Consensus 79 -~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~ 115 (265)
T PRK13304 79 -PKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCK 115 (265)
T ss_pred -HHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCE
Confidence 233455666666777887764 4677777665543
No 140
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=98.07 E-value=3.4e-05 Score=68.81 Aligned_cols=150 Identities=15% Similarity=0.141 Sum_probs=98.8
Q ss_pred cccCCCEEEEEcCChhHHHHHHHHHhcCCc---EEEECCCC----ccc-----------ccc--ccc-CCHHHHHhhCCe
Q 021361 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCP---ISYHSRSE----KSD-----------ANY--KYY-TNIIDLASNCQI 198 (313)
Q Consensus 140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~---V~~~~~~~----~~~-----------~~~--~~~-~~l~~l~~~aDv 198 (313)
..++++++.|+|.|.+|+.+|..|...|++ |+.+||+. +.. ... ... .++.+.++++|+
T Consensus 21 ~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dv 100 (226)
T cd05311 21 KKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADV 100 (226)
T ss_pred CCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCE
Confidence 458899999999999999999999999985 99999983 221 000 011 267788889999
Q ss_pred eEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcC
Q 021361 199 LIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLP 278 (313)
Q Consensus 199 v~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TP 278 (313)
|+.+.| .+++..+.++.|+++.++...+ .+..+. +.+...+.+.. ...|-. +. -..+..|+++=|
T Consensus 101 lIgaT~-----~G~~~~~~l~~m~~~~ivf~ls--nP~~e~-~~~~A~~~ga~-i~a~G~--~~----~~~Q~nn~~~fP 165 (226)
T cd05311 101 FIGVSR-----PGVVKKEMIKKMAKDPIVFALA--NPVPEI-WPEEAKEAGAD-IVATGR--SD----FPNQVNNVLGFP 165 (226)
T ss_pred EEeCCC-----CCCCCHHHHHhhCCCCEEEEeC--CCCCcC-CHHHHHHcCCc-EEEeCC--CC----Cccccceeeecc
Confidence 999886 4678888999999999888888 333444 44444443331 122221 11 245778999999
Q ss_pred CCCCCcHH-----HHHHHHHHHHHHHHHHHc
Q 021361 279 HVGSDTEE-----TSKAMADLVIENLVAHFS 304 (313)
Q Consensus 279 Hia~~t~~-----~~~~~~~~~~~ni~~~~~ 304 (313)
=++=..-. -.+.|...+.+-+-.+..
T Consensus 166 g~~~g~~~~~~~~i~~~m~~~aa~~la~~~~ 196 (226)
T cd05311 166 GIFRGALDVRATKITEEMKLAAAEAIADLAE 196 (226)
T ss_pred hhhHHHHHcCCcCCCHHHHHHHHHHHHhhCC
Confidence 77632221 124555555555555544
No 141
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.06 E-value=1.3e-05 Score=72.80 Aligned_cols=98 Identities=22% Similarity=0.299 Sum_probs=74.7
Q ss_pred CEEEEEcCChhHHHHHHHHHhcC----CcEEEECCCCcccc------cccccCCHHHHHhhCCeeEEecCCChHhhhccC
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFG----CPISYHSRSEKSDA------NYKYYTNIIDLASNCQILIVACSLTEETHHIVN 214 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g----~~V~~~~~~~~~~~------~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~ 214 (313)
.+|||||+|+||++++..|...| .+|++.+|+.+... +.....+.+++..++|+|++++. |. .-
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK--Pq----~~ 75 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK--PQ----DL 75 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC--hH----hH
Confidence 47999999999999999999988 57999999876532 22235677899999999999994 32 22
Q ss_pred HHHHhhcC---CCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 021361 215 RKVIDALG---PSGILINIGRGAHIDEPELVSALLEGRL 250 (313)
Q Consensus 215 ~~~l~~mk---~ga~~in~~rg~~vd~~al~~al~~g~~ 250 (313)
.+.+..++ ++.++|.++-| +..+.|.+.+.+.++
T Consensus 76 ~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~~~~v 112 (266)
T COG0345 76 EEVLSKLKPLTKDKLVISIAAG--VSIETLERLLGGLRV 112 (266)
T ss_pred HHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcCCCce
Confidence 34555565 68999999877 677888888763333
No 142
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.06 E-value=2e-05 Score=72.12 Aligned_cols=80 Identities=18% Similarity=0.299 Sum_probs=66.6
Q ss_pred ccccCCCEEEEEcCC-hhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361 139 GSKFSGKSVGIVGLG-RIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV 217 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~ 217 (313)
+.++.||++.|||-| .+|+.+|.+|...|+.|+.+.... .++.+..++||+|+.++.- .+++..+.
T Consensus 152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T---------~~l~~~~~~ADIvV~AvGk----p~~i~~~~ 218 (281)
T PRK14183 152 EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT---------KDLKAHTKKADIVIVGVGK----PNLITEDM 218 (281)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------cCHHHHHhhCCEEEEecCc----ccccCHHH
Confidence 447999999999999 799999999999999998775432 3688999999999999953 56788765
Q ss_pred HhhcCCCcEEEEcCCCC
Q 021361 218 IDALGPSGILINIGRGA 234 (313)
Q Consensus 218 l~~mk~ga~~in~~rg~ 234 (313)
.|+|+++||+|--.
T Consensus 219 ---vk~gavvIDvGin~ 232 (281)
T PRK14183 219 ---VKEGAIVIDIGINR 232 (281)
T ss_pred ---cCCCcEEEEeeccc
Confidence 58999999998544
No 143
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.04 E-value=3.3e-05 Score=70.92 Aligned_cols=80 Identities=19% Similarity=0.398 Sum_probs=66.5
Q ss_pred ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361 139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV 217 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~ 217 (313)
+.++.||++.|||-+. +|+.++.+|...|+.|+.+.... .++.+..++||+|+.++.- .+++..+.
T Consensus 154 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T---------~~L~~~~~~ADIvV~AvGk----p~~i~~~~ 220 (288)
T PRK14171 154 EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT---------HNLSSITSKADIVVAAIGS----PLKLTAEY 220 (288)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEccCC----CCccCHHH
Confidence 3468999999999987 69999999999999998776432 3689999999999999963 46788765
Q ss_pred HhhcCCCcEEEEcCCCC
Q 021361 218 IDALGPSGILINIGRGA 234 (313)
Q Consensus 218 l~~mk~ga~~in~~rg~ 234 (313)
.|+|+++||+|--.
T Consensus 221 ---vk~GavVIDvGin~ 234 (288)
T PRK14171 221 ---FNPESIVIDVGINR 234 (288)
T ss_pred ---cCCCCEEEEeeccc
Confidence 68999999998443
No 144
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=98.04 E-value=2.5e-05 Score=71.06 Aligned_cols=97 Identities=28% Similarity=0.506 Sum_probs=66.0
Q ss_pred CCEEEEEcCChhHHHHHHHHHhcCC----cEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHh
Q 021361 144 GKSVGIVGLGRIGTAIAKRVEAFGC----PISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVID 219 (313)
Q Consensus 144 g~~vgiiG~G~iG~~~a~~l~~~g~----~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~ 219 (313)
..+|||||+|+||.++++.|...|. ++++++|+.... +.....+..+++++||+|++++| ...++.++. +...
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl~-~i~~ 79 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-PFVYLQSNEELAKTCDIIVLAVK-PDLAGKVLL-EIKP 79 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-CeEEeCChHHHHHhCCEEEEEeC-HHHHHHHHH-HHHh
Confidence 3589999999999999999987762 488998876542 22334577888899999999987 334555544 2334
Q ss_pred hcCCCcEEEEcCCCCccCHHHHHHHHH
Q 021361 220 ALGPSGILINIGRGAHIDEPELVSALL 246 (313)
Q Consensus 220 ~mk~ga~~in~~rg~~vd~~al~~al~ 246 (313)
.++++ .+|.+.-| +..+.+.+.+.
T Consensus 80 ~l~~~-~iIS~~aG--i~~~~l~~~~~ 103 (260)
T PTZ00431 80 YLGSK-LLISICGG--LNLKTLEEMVG 103 (260)
T ss_pred hccCC-EEEEEeCC--ccHHHHHHHcC
Confidence 45554 44555444 34666666553
No 145
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=98.04 E-value=6.1e-06 Score=75.52 Aligned_cols=91 Identities=16% Similarity=0.282 Sum_probs=72.0
Q ss_pred ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc------ccc------ccCCHHHHHhhCCeeEEecCCChH
Q 021361 141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA------NYK------YYTNIIDLASNCQILIVACSLTEE 208 (313)
Q Consensus 141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~------~~~------~~~~l~~l~~~aDvv~l~~p~~~~ 208 (313)
....-+|.|||.|-+|..-|+.+.++|.+|...|++.++.. +.+ ....+++.+.++|+|+-++-....
T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga 244 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA 244 (371)
T ss_pred CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence 46677899999999999999999999999999998865321 111 124688899999999987643332
Q ss_pred -hhhccCHHHHhhcCCCcEEEEcC
Q 021361 209 -THHIVNRKVIDALGPSGILINIG 231 (313)
Q Consensus 209 -t~~~i~~~~l~~mk~ga~~in~~ 231 (313)
.-.++.++.+++||||+++||++
T Consensus 245 kaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 245 KAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCceehhHHHHHhcCCCcEEEEEE
Confidence 33477888999999999999985
No 146
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.04 E-value=4.5e-05 Score=70.36 Aligned_cols=126 Identities=16% Similarity=0.237 Sum_probs=87.0
Q ss_pred ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361 139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV 217 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~ 217 (313)
+.++.||++.|||-+. +|+.++.+|...|+.|+.+.... .++++..++||+|+.+++- .+++..+.
T Consensus 153 ~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T---------~~l~~~~~~ADIvIsAvGk----p~~i~~~~ 219 (297)
T PRK14186 153 QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT---------QDLASITREADILVAAAGR----PNLIGAEM 219 (297)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEccCC----cCccCHHH
Confidence 4579999999999987 69999999999999998875432 3689999999999999964 45788755
Q ss_pred HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHH
Q 021361 218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVI 296 (313)
Q Consensus 218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~ 296 (313)
.|+|+++||+|-..+-+.+ ++|++ .=||-..+ .... --.+||--||--.-+..-..+.++
T Consensus 220 ---ik~gavVIDvGin~~~~~~------~~gkl---~GDvd~~~------v~~~-a~~iTPVPGGVGp~T~a~L~~Nl~ 279 (297)
T PRK14186 220 ---VKPGAVVVDVGIHRLPSSD------GKTRL---CGDVDFEE------VEPV-AAAITPVPGGVGPMTVTMLLVNTV 279 (297)
T ss_pred ---cCCCCEEEEeccccccccc------cCCce---eCCccHHH------HHhh-ceEecCCCCCchHHHHHHHHHHHH
Confidence 6899999999966532211 13443 34552111 1111 246899878766544433333333
No 147
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.03 E-value=3.1e-05 Score=70.90 Aligned_cols=80 Identities=23% Similarity=0.437 Sum_probs=66.9
Q ss_pred ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361 139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV 217 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~ 217 (313)
+.++.||++.|||-+. +|+.+|.+|...|+.|+++.... .++.+..++||+|+.+++- .+++..+.
T Consensus 151 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T---------~~l~~~~~~ADIvI~AvG~----p~~i~~~~ 217 (282)
T PRK14169 151 DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT---------RNLKQLTKEADILVVAVGV----PHFIGADA 217 (282)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC---------CCHHHHHhhCCEEEEccCC----cCccCHHH
Confidence 4578999999999987 69999999999999998875432 3689999999999999964 55788765
Q ss_pred HhhcCCCcEEEEcCCCC
Q 021361 218 IDALGPSGILINIGRGA 234 (313)
Q Consensus 218 l~~mk~ga~~in~~rg~ 234 (313)
+|+|+++||+|--.
T Consensus 218 ---vk~GavVIDvGin~ 231 (282)
T PRK14169 218 ---VKPGAVVIDVGISR 231 (282)
T ss_pred ---cCCCcEEEEeeccc
Confidence 68999999998644
No 148
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.02 E-value=4.8e-05 Score=69.52 Aligned_cols=80 Identities=18% Similarity=0.380 Sum_probs=67.1
Q ss_pred ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361 139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV 217 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~ 217 (313)
+.++.||++.|||-+. +|+.++.+|...|+.|+.+.... .++.+..++||+|+.+++- .+++..+.
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T---------~~l~~~~~~ADIvIsAvGk----p~~i~~~~ 219 (278)
T PRK14172 153 NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT---------KNLKEVCKKADILVVAIGR----PKFIDEEY 219 (278)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEcCCC----cCccCHHH
Confidence 3479999999999987 69999999999999998887532 3689999999999999964 55788765
Q ss_pred HhhcCCCcEEEEcCCCC
Q 021361 218 IDALGPSGILINIGRGA 234 (313)
Q Consensus 218 l~~mk~ga~~in~~rg~ 234 (313)
.|+|+++||+|-..
T Consensus 220 ---ik~gavVIDvGin~ 233 (278)
T PRK14172 220 ---VKEGAIVIDVGTSS 233 (278)
T ss_pred ---cCCCcEEEEeeccc
Confidence 68999999998544
No 149
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.02 E-value=1.4e-05 Score=74.68 Aligned_cols=90 Identities=20% Similarity=0.379 Sum_probs=63.2
Q ss_pred cCCCEEEEEcCChhHHHHHHHHHhcC-CcEEEECCCCccc------ccccc--cCCHHHHHhhCCeeEEecCCChHhhhc
Q 021361 142 FSGKSVGIVGLGRIGTAIAKRVEAFG-CPISYHSRSEKSD------ANYKY--YTNIIDLASNCQILIVACSLTEETHHI 212 (313)
Q Consensus 142 l~g~~vgiiG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~------~~~~~--~~~l~~l~~~aDvv~l~~p~~~~t~~~ 212 (313)
+.|++|+|||.|.||+.+++.|+..| .+|.+++|+.++. .+... ..++.+.+.++|+|+.++|.... ..+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~ 254 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKI 254 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHH
Confidence 68999999999999999999999876 4689999986532 11111 23466778899999999986544 222
Q ss_pred cCHHHHhhc-CCCcEEEEcCCC
Q 021361 213 VNRKVIDAL-GPSGILINIGRG 233 (313)
Q Consensus 213 i~~~~l~~m-k~ga~~in~~rg 233 (313)
+ +..++.. +++.++||.+..
T Consensus 255 ~-~~~~~~~~~~~~~viDlavP 275 (311)
T cd05213 255 V-ERAMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred H-HHHHhhCCCCCeEEEEeCCC
Confidence 2 2233322 356788888753
No 150
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.01 E-value=2.9e-05 Score=71.15 Aligned_cols=80 Identities=15% Similarity=0.341 Sum_probs=67.0
Q ss_pred ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361 139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV 217 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~ 217 (313)
+.++.||++.|||-+. +|+.++.+|...|+.|+.+.... .++.+..++||+|+.++.- .+++..+.
T Consensus 154 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T---------~~l~~~~~~ADIvIsAvGk----~~~i~~~~ 220 (284)
T PRK14177 154 GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT---------QNLPSIVRQADIIVGAVGK----PEFIKADW 220 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEeCCC----cCccCHHH
Confidence 4578999999999987 79999999999999999887533 3688999999999999854 56788755
Q ss_pred HhhcCCCcEEEEcCCCC
Q 021361 218 IDALGPSGILINIGRGA 234 (313)
Q Consensus 218 l~~mk~ga~~in~~rg~ 234 (313)
.|+|+++||+|--.
T Consensus 221 ---ik~gavVIDvGin~ 234 (284)
T PRK14177 221 ---ISEGAVLLDAGYNP 234 (284)
T ss_pred ---cCCCCEEEEecCcc
Confidence 68999999998543
No 151
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.00 E-value=3.1e-05 Score=70.92 Aligned_cols=80 Identities=16% Similarity=0.316 Sum_probs=67.1
Q ss_pred ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361 139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV 217 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~ 217 (313)
+.++.||++.|||-+. +|+.+|.+|...|+.|+.+.... .++++..++||+|+.++.- .+++..+.
T Consensus 152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T---------~nl~~~~~~ADIvIsAvGk----p~~i~~~~ 218 (282)
T PRK14166 152 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------KDLSLYTRQADLIIVAAGC----VNLLRSDM 218 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEcCCC----cCccCHHH
Confidence 4578999999999987 69999999999999998877543 3699999999999999964 56788765
Q ss_pred HhhcCCCcEEEEcCCCC
Q 021361 218 IDALGPSGILINIGRGA 234 (313)
Q Consensus 218 l~~mk~ga~~in~~rg~ 234 (313)
.|+|+++||+|--.
T Consensus 219 ---vk~GavVIDvGin~ 232 (282)
T PRK14166 219 ---VKEGVIVVDVGINR 232 (282)
T ss_pred ---cCCCCEEEEecccc
Confidence 68999999998543
No 152
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.99 E-value=3.5e-05 Score=70.76 Aligned_cols=135 Identities=17% Similarity=0.257 Sum_probs=90.8
Q ss_pred ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361 139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV 217 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~ 217 (313)
+.++.||++.|||-+. +|+.+|.+|...|+.|+.+.... .++++..++||+|+.++.- .+++..+.
T Consensus 150 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T---------~~l~~~~~~ADIvIsAvGk----p~~i~~~~ 216 (287)
T PRK14173 150 GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT---------QDLPAVTRRADVLVVAVGR----PHLITPEM 216 (287)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEecCC----cCccCHHH
Confidence 4579999999999986 79999999999999998776533 3689999999999999954 46788765
Q ss_pred HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHH
Q 021361 218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIE 297 (313)
Q Consensus 218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ 297 (313)
.|+|+++||+|--.+.+ ++|+.. ..=||- .+ .... --.+||==||--.-+..-+.+.++.
T Consensus 217 ---vk~GavVIDVGin~~~~--------~~gk~~-l~GDVd-~~------v~~~-a~~iTPVPGGVGp~T~a~L~~N~~~ 276 (287)
T PRK14173 217 ---VRPGAVVVDVGINRVGG--------NGGRDI-LTGDVH-PE------VAEV-AGALTPVPGGVGPMTVAMLMANTVI 276 (287)
T ss_pred ---cCCCCEEEEccCccccC--------CCCcee-eecccc-Hh------HHhh-CcEEecCCCChhHHHHHHHHHHHHH
Confidence 58999999999765432 134411 234553 11 1111 1358887677554444444444444
Q ss_pred HHHHHHcCC
Q 021361 298 NLVAHFSNK 306 (313)
Q Consensus 298 ni~~~~~g~ 306 (313)
-.++...|+
T Consensus 277 a~~~~~~~~ 285 (287)
T PRK14173 277 AALRRRGGR 285 (287)
T ss_pred HHHHHccCC
Confidence 444444443
No 153
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.99 E-value=0.00016 Score=71.22 Aligned_cols=131 Identities=11% Similarity=0.121 Sum_probs=89.0
Q ss_pred CEEEEEcCChhHHHHHHHHHhc--CCcEEEECCCCccc------------cc------------ccccCCHHHHHhhCCe
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAF--GCPISYHSRSEKSD------------AN------------YKYYTNIIDLASNCQI 198 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~--g~~V~~~~~~~~~~------------~~------------~~~~~~l~~l~~~aDv 198 (313)
.+|+|||+|.+|..+|..|... |++|+++|...+.. .+ ..+.++.++.+++||+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 4799999999999999999966 58899999766421 00 1123567788999999
Q ss_pred eEEecCCChH-----------hhhcc--CHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEcc-CCCCCCCC
Q 021361 199 LIVACSLTEE-----------THHIV--NRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLD-VYENEPEV 264 (313)
Q Consensus 199 v~l~~p~~~~-----------t~~~i--~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lD-V~~~EP~~ 264 (313)
+++|+|.... ...+. .+..-+.+++|.++|.-|.-.+=-.+.+...+.+.. .|.-.. +|.+|-+.
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~PErl~ 160 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNPEFLA 160 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECCCccC
Confidence 9999973221 11222 134556689999999999877777778888877631 111111 25667665
Q ss_pred Cc----ccCCCCcEEE
Q 021361 265 PE----QMLGLNNVVL 276 (313)
Q Consensus 265 ~~----~l~~~pnvi~ 276 (313)
+. .+...|+|++
T Consensus 161 ~G~a~~d~~~p~riVi 176 (473)
T PLN02353 161 EGTAIEDLFKPDRVLI 176 (473)
T ss_pred CCCcccccCCCCEEEE
Confidence 53 4777788875
No 154
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.99 E-value=2.2e-05 Score=72.97 Aligned_cols=91 Identities=20% Similarity=0.356 Sum_probs=69.3
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-------------------ccccccCCHHHHHhhCCeeEEecCC
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-------------------ANYKYYTNIIDLASNCQILIVACSL 205 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-------------------~~~~~~~~l~~l~~~aDvv~l~~p~ 205 (313)
.+|+|||.|..|.++|+.|...|.+|..|.|.++.. .......++.++++.||+|++.+|.
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs 81 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS 81 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence 589999999999999999999999999998864310 1123457899999999999999995
Q ss_pred ChHhhhccCHHHHhhcCCCcEEEEcCCCCccC
Q 021361 206 TEETHHIVNRKVIDALGPSGILINIGRGAHID 237 (313)
Q Consensus 206 ~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd 237 (313)
...+..+.. .-..++++..+|+++.|=-.+
T Consensus 82 -~~~r~v~~~-l~~~l~~~~~iv~~sKGie~~ 111 (329)
T COG0240 82 -QALREVLRQ-LKPLLLKDAIIVSATKGLEPE 111 (329)
T ss_pred -HHHHHHHHH-HhhhccCCCeEEEEeccccCC
Confidence 233333332 235578999999999875443
No 155
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.97 E-value=4.1e-05 Score=70.09 Aligned_cols=79 Identities=19% Similarity=0.350 Sum_probs=66.2
Q ss_pred ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361 139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV 217 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~ 217 (313)
+.++.||++.|||-+. +|+.+|.+|...|+.|+.+.... .++.+..++||+|+.+++- .+++..+.
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T---------~dl~~~~k~ADIvIsAvGk----p~~i~~~~ 219 (282)
T PRK14180 153 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT---------TDLKSHTTKADILIVAVGK----PNFITADM 219 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC---------CCHHHHhhhcCEEEEccCC----cCcCCHHH
Confidence 4579999999999987 79999999999999998876533 3688899999999999964 55688755
Q ss_pred HhhcCCCcEEEEcCCC
Q 021361 218 IDALGPSGILINIGRG 233 (313)
Q Consensus 218 l~~mk~ga~~in~~rg 233 (313)
.|+|+++||+|-.
T Consensus 220 ---vk~gavVIDvGin 232 (282)
T PRK14180 220 ---VKEGAVVIDVGIN 232 (282)
T ss_pred ---cCCCcEEEEeccc
Confidence 6899999999843
No 156
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.97 E-value=2.5e-05 Score=73.68 Aligned_cols=102 Identities=16% Similarity=0.289 Sum_probs=72.4
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc----cccc-----------------ccCCHHHHHhhCCeeEEec
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD----ANYK-----------------YYTNIIDLASNCQILIVAC 203 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----~~~~-----------------~~~~l~~l~~~aDvv~l~~ 203 (313)
.+|+|||.|.||..+|..|...|++|.+++|+.... .+.. ...+. +.++.+|+|++++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~v 81 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVTV 81 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEEe
Confidence 479999999999999999999999999999865311 1110 12234 5678999999999
Q ss_pred CCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 021361 204 SLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRL 250 (313)
Q Consensus 204 p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~ 250 (313)
+.. .....+ ......++++.+++.+.- ++-..+.+.+.+.+.++
T Consensus 82 k~~-~~~~~~-~~l~~~~~~~~iii~~~n-G~~~~~~l~~~~~~~~~ 125 (341)
T PRK08229 82 KSA-ATADAA-AALAGHARPGAVVVSFQN-GVRNADVLRAALPGATV 125 (341)
T ss_pred cCc-chHHHH-HHHHhhCCCCCEEEEeCC-CCCcHHHHHHhCCCCcE
Confidence 854 444444 345666788999888854 34455667777665544
No 157
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=97.97 E-value=3.6e-05 Score=71.04 Aligned_cols=136 Identities=16% Similarity=0.178 Sum_probs=92.4
Q ss_pred ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361 139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV 217 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~ 217 (313)
+.++.||++.|||-+. +|+.+|.+|...|+.|+.+.... .++++.+++||+|+.++.- .+++..+.
T Consensus 162 ~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T---------~nl~~~~~~ADIvv~AvGk----~~~i~~~~ 228 (299)
T PLN02516 162 GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT---------PDPESIVREADIVIAAAGQ----AMMIKGDW 228 (299)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEcCCC----cCccCHHH
Confidence 4579999999999987 69999999999999999886432 3689999999999999854 46788765
Q ss_pred HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHH
Q 021361 218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIE 297 (313)
Q Consensus 218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ 297 (313)
.|+|+++||+|--..-+. ...+|. ...=||-..+- . ..--.+||=-||--.-+..-..+.+++
T Consensus 229 ---vk~gavVIDvGin~~~~~-----~~~~g~--kl~GDvd~e~v------~-~~a~~iTPVPGGVGp~T~a~L~~N~v~ 291 (299)
T PLN02516 229 ---IKPGAAVIDVGTNAVSDP-----SKKSGY--RLVGDVDFAEV------S-KVAGWITPVPGGVGPMTVAMLLKNTVD 291 (299)
T ss_pred ---cCCCCEEEEeeccccCcc-----cccCCC--ceEcCcChHHh------h-hhceEecCCCCCchHHHHHHHHHHHHH
Confidence 689999999985442211 111231 13456632111 0 012358998777666555555555555
Q ss_pred HHHHHHc
Q 021361 298 NLVAHFS 304 (313)
Q Consensus 298 ni~~~~~ 304 (313)
-.+++++
T Consensus 292 a~~~~~~ 298 (299)
T PLN02516 292 GAKRVFA 298 (299)
T ss_pred HHHHHhh
Confidence 5555553
No 158
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.97 E-value=4.3e-05 Score=70.33 Aligned_cols=80 Identities=19% Similarity=0.385 Sum_probs=67.2
Q ss_pred ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361 139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV 217 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~ 217 (313)
+.++.||++.|||-+. +|+.++.+|...|+.|+.+.... .++.+..++||+|+.++.- .+++..+.
T Consensus 155 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T---------~~l~~~~~~ADIvVsAvGk----p~~i~~~~ 221 (294)
T PRK14187 155 TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT---------RDLADYCSKADILVAAVGI----PNFVKYSW 221 (294)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC---------CCHHHHHhhCCEEEEccCC----cCccCHHH
Confidence 4579999999999987 69999999999999998877533 3689999999999999964 55788766
Q ss_pred HhhcCCCcEEEEcCCCC
Q 021361 218 IDALGPSGILINIGRGA 234 (313)
Q Consensus 218 l~~mk~ga~~in~~rg~ 234 (313)
.|+|+++||+|-..
T Consensus 222 ---ik~gaiVIDVGin~ 235 (294)
T PRK14187 222 ---IKKGAIVIDVGINS 235 (294)
T ss_pred ---cCCCCEEEEecccc
Confidence 57999999998544
No 159
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.96 E-value=1.6e-05 Score=77.43 Aligned_cols=89 Identities=19% Similarity=0.365 Sum_probs=64.3
Q ss_pred ccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcccc------ccc--ccCCHHHHHhhCCeeEEecCCChHhhh
Q 021361 141 KFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDA------NYK--YYTNIIDLASNCQILIVACSLTEETHH 211 (313)
Q Consensus 141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~------~~~--~~~~l~~l~~~aDvv~l~~p~~~~t~~ 211 (313)
.+.|++|+|||.|.||+.+++.|...|+ +|++++|+.+... +.. ...++.+.+.++|+|+.++|.. ..
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~---~~ 255 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAP---HP 255 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCC---Cc
Confidence 3789999999999999999999999998 6999999865421 111 1234556778899999887643 34
Q ss_pred ccCHHHHhhc-----CCCcEEEEcCC
Q 021361 212 IVNRKVIDAL-----GPSGILINIGR 232 (313)
Q Consensus 212 ~i~~~~l~~m-----k~ga~~in~~r 232 (313)
++..+.++.+ +.+.++||.+-
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeCC
Confidence 5666666543 24567777764
No 160
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.95 E-value=5e-05 Score=69.49 Aligned_cols=80 Identities=15% Similarity=0.246 Sum_probs=67.0
Q ss_pred ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361 139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV 217 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~ 217 (313)
+.++.||++.|||-+. +|+.++.+|...|+.|+.+.... .++++..++||+|+.+++- .+++..+.
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T---------~nl~~~~~~ADIvI~AvGk----~~~i~~~~ 218 (282)
T PRK14182 152 RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT---------ADLAGEVGRADILVAAIGK----AELVKGAW 218 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEecCC----cCccCHHH
Confidence 3468999999999987 69999999999999998876532 3688999999999999963 56788765
Q ss_pred HhhcCCCcEEEEcCCCC
Q 021361 218 IDALGPSGILINIGRGA 234 (313)
Q Consensus 218 l~~mk~ga~~in~~rg~ 234 (313)
.|+|+++||+|-..
T Consensus 219 ---ik~gaiVIDvGin~ 232 (282)
T PRK14182 219 ---VKEGAVVIDVGMNR 232 (282)
T ss_pred ---cCCCCEEEEeecee
Confidence 68999999998554
No 161
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.93 E-value=4.7e-05 Score=71.30 Aligned_cols=80 Identities=18% Similarity=0.378 Sum_probs=66.8
Q ss_pred ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361 139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV 217 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~ 217 (313)
+.++.||++.|||-+. +|+.+|.+|...|+.|..+.... .++++..++||+|+.++.- .+++..+.
T Consensus 209 ~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T---------~nl~~~~~~ADIvIsAvGk----p~~v~~d~ 275 (345)
T PLN02897 209 GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT---------KDPEQITRKADIVIAAAGI----PNLVRGSW 275 (345)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC---------CCHHHHHhhCCEEEEccCC----cCccCHHH
Confidence 4579999999999987 69999999999999998776433 3688999999999999964 56788765
Q ss_pred HhhcCCCcEEEEcCCCC
Q 021361 218 IDALGPSGILINIGRGA 234 (313)
Q Consensus 218 l~~mk~ga~~in~~rg~ 234 (313)
+|+|+++||+|--.
T Consensus 276 ---vk~GavVIDVGin~ 289 (345)
T PLN02897 276 ---LKPGAVVIDVGTTP 289 (345)
T ss_pred ---cCCCCEEEEccccc
Confidence 68999999998544
No 162
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.93 E-value=5.1e-05 Score=71.00 Aligned_cols=86 Identities=17% Similarity=0.181 Sum_probs=62.7
Q ss_pred CCCEEEEEcCChhHHHHHHHHHh-cC-CcEEEECCCCcccc---------c--ccccCCHHHHHhhCCeeEEecCCChHh
Q 021361 143 SGKSVGIVGLGRIGTAIAKRVEA-FG-CPISYHSRSEKSDA---------N--YKYYTNIIDLASNCQILIVACSLTEET 209 (313)
Q Consensus 143 ~g~~vgiiG~G~iG~~~a~~l~~-~g-~~V~~~~~~~~~~~---------~--~~~~~~l~~l~~~aDvv~l~~p~~~~t 209 (313)
..++|+|||.|.+|+.+++.+.. ++ .+|.+|+|++++.. + ...+.++++.+++||+|++++|.+
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~--- 200 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST--- 200 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---
Confidence 46799999999999999986654 45 56999999875421 1 223468899999999998888754
Q ss_pred hhccCHHHHhhcCCCcEEEEcCCCC
Q 021361 210 HHIVNRKVIDALGPSGILINIGRGA 234 (313)
Q Consensus 210 ~~~i~~~~l~~mk~ga~~in~~rg~ 234 (313)
..++.. +.++||+.+.-++...
T Consensus 201 ~pvl~~---~~l~~g~~i~~ig~~~ 222 (314)
T PRK06141 201 EPLVRG---EWLKPGTHLDLVGNFT 222 (314)
T ss_pred CCEecH---HHcCCCCEEEeeCCCC
Confidence 456665 3479999655555433
No 163
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.93 E-value=3.7e-05 Score=72.70 Aligned_cols=89 Identities=21% Similarity=0.268 Sum_probs=65.3
Q ss_pred EEEEEcCChhHHHHHHHHHhcC--------CcEEEECCCC-----cc-------------ccc------ccccCCHHHHH
Q 021361 146 SVGIVGLGRIGTAIAKRVEAFG--------CPISYHSRSE-----KS-------------DAN------YKYYTNIIDLA 193 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~g--------~~V~~~~~~~-----~~-------------~~~------~~~~~~l~~l~ 193 (313)
+|+|||.|++|.++|..|...| .+|..|.|.. .. ..+ .....++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 5899999999999999998877 8999997732 10 011 12346899999
Q ss_pred hhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCcc
Q 021361 194 SNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHI 236 (313)
Q Consensus 194 ~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~v 236 (313)
+.||+|++++|. ...+.++ .+.-..++++..+|+++.|=-.
T Consensus 81 ~~ADiIIlAVPs-~~i~~vl-~~l~~~l~~~~~iVs~tKGie~ 121 (342)
T TIGR03376 81 KGADILVFVIPH-QFLEGIC-KQLKGHVKPNARAISCIKGLEV 121 (342)
T ss_pred hcCCEEEEECCh-HHHHHHH-HHHHhhcCCCCEEEEEeCCccc
Confidence 999999999985 2333333 3444567889999999987433
No 164
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.92 E-value=4.5e-05 Score=71.77 Aligned_cols=80 Identities=18% Similarity=0.325 Sum_probs=67.0
Q ss_pred ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361 139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV 217 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~ 217 (313)
+.++.||++.|||-+. +|+.+|.+|...|+.|+.+.... .++++..++||+|+.++.- .+++..+.
T Consensus 226 ~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T---------~nl~~~~r~ADIVIsAvGk----p~~i~~d~ 292 (364)
T PLN02616 226 NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT---------KNPEEITREADIIISAVGQ----PNMVRGSW 292 (364)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC---------CCHHHHHhhCCEEEEcCCC----cCcCCHHH
Confidence 4579999999999987 69999999999999998876432 3689999999999999954 56788765
Q ss_pred HhhcCCCcEEEEcCCCC
Q 021361 218 IDALGPSGILINIGRGA 234 (313)
Q Consensus 218 l~~mk~ga~~in~~rg~ 234 (313)
.|+|+++||+|--.
T Consensus 293 ---vK~GAvVIDVGIn~ 306 (364)
T PLN02616 293 ---IKPGAVVIDVGINP 306 (364)
T ss_pred ---cCCCCEEEeccccc
Confidence 68999999998544
No 165
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.91 E-value=0.00012 Score=69.23 Aligned_cols=138 Identities=21% Similarity=0.341 Sum_probs=96.5
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc------------------------c-ccccCCHHHHHhhCCee
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA------------------------N-YKYYTNIIDLASNCQIL 199 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~------------------------~-~~~~~~l~~l~~~aDvv 199 (313)
.+|||||+|-||-.+|-.+...|++|+++|-.++... + .+...+.++ ++.||++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~~dv~ 88 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEE-LKECDVF 88 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhh-cccCCEE
Confidence 6999999999999999999999999999998764310 0 111233444 4499999
Q ss_pred EEecCCChHhh-------hccC--HHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhC--CceEEEccC---CCCCCCCC
Q 021361 200 IVACSLTEETH-------HIVN--RKVIDALGPSGILINIGRGAHIDEPELVSALLEG--RLAGAGLDV---YENEPEVP 265 (313)
Q Consensus 200 ~l~~p~~~~t~-------~~i~--~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g--~~~ga~lDV---~~~EP~~~ 265 (313)
++|+| ||-+. .+.+ +...+.||+|.++|-=|.-.+=..+.+...|-+. .+. ..-|. |.+|-..|
T Consensus 89 iI~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~-~~~Df~laysPERv~P 166 (436)
T COG0677 89 IICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLK-FGEDFYLAYSPERVLP 166 (436)
T ss_pred EEEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCc-ccceeeEeeCccccCC
Confidence 99999 34332 1121 3355679999999999998888888888888764 233 34564 46665544
Q ss_pred c----ccCCCCcEEEcCCCCCCcHHHHHH
Q 021361 266 E----QMLGLNNVVLLPHVGSDTEETSKA 290 (313)
Q Consensus 266 ~----~l~~~pnvi~TPHia~~t~~~~~~ 290 (313)
. .+-+.|+| |||.|..+.+.
T Consensus 167 G~~~~el~~~~kV-----IgG~tp~~~e~ 190 (436)
T COG0677 167 GNVLKELVNNPKV-----IGGVTPKCAEL 190 (436)
T ss_pred CchhhhhhcCCce-----eecCCHHHHHH
Confidence 3 46666777 47787665433
No 166
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.90 E-value=7e-05 Score=68.68 Aligned_cols=113 Identities=17% Similarity=0.327 Sum_probs=82.3
Q ss_pred ccccCCCEEEEEcCCh-hHHHHHHHHHh--cCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCH
Q 021361 139 GSKFSGKSVGIVGLGR-IGTAIAKRVEA--FGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNR 215 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~--~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~ 215 (313)
+.++.||++.|||-+. +|+.+|.+|.. .++.|+++.... .++.+..++||+|+.++.- .+++..
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T---------~~l~~~~k~ADIvV~AvGk----p~~i~~ 219 (284)
T PRK14193 153 DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGT---------RDLAAHTRRADIIVAAAGV----AHLVTA 219 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCC---------CCHHHHHHhCCEEEEecCC----cCccCH
Confidence 4579999999999986 79999999987 789898876532 3699999999999999964 457887
Q ss_pred HHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHH
Q 021361 216 KVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETS 288 (313)
Q Consensus 216 ~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~ 288 (313)
+. +|+|+++||+|--.+ .+|++. =||- |- ..... -.+||-=||--.-+.
T Consensus 220 ~~---ik~GavVIDvGin~~----------~~gkl~---GDvd--~~-----v~~~a-~~iTPVPGGVGp~T~ 268 (284)
T PRK14193 220 DM---VKPGAAVLDVGVSRA----------GDGKLV---GDVH--PD-----VWEVA-GAVSPNPGGVGPMTR 268 (284)
T ss_pred HH---cCCCCEEEEcccccc----------CCCcEE---eecC--Hh-----HHhhC-CEEeCCCCChhHHHH
Confidence 65 689999999996653 245443 3553 11 11111 258998777655443
No 167
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.90 E-value=6.8e-05 Score=68.80 Aligned_cols=80 Identities=15% Similarity=0.386 Sum_probs=65.8
Q ss_pred ccccCCCEEEEEcCCh-hHHHHHHHHHhc----CCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhcc
Q 021361 139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAF----GCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIV 213 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~----g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i 213 (313)
+.++.||++.|||-+. +|+.+|.+|... ++.|+.+.... .++.+.+++||+|+.+++- .+++
T Consensus 148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T---------~~l~~~~~~ADIvV~AvG~----p~~i 214 (287)
T PRK14181 148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS---------ENLTEILKTADIIIAAIGV----PLFI 214 (287)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC---------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 4478999999999987 699999999987 77888775432 3699999999999999964 4678
Q ss_pred CHHHHhhcCCCcEEEEcCCCC
Q 021361 214 NRKVIDALGPSGILINIGRGA 234 (313)
Q Consensus 214 ~~~~l~~mk~ga~~in~~rg~ 234 (313)
..+. .|+|+++||+|-..
T Consensus 215 ~~~~---ik~GavVIDvGin~ 232 (287)
T PRK14181 215 KEEM---IAEKAVIVDVGTSR 232 (287)
T ss_pred CHHH---cCCCCEEEEecccc
Confidence 8765 68999999998554
No 168
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=97.89 E-value=4.3e-05 Score=69.43 Aligned_cols=114 Identities=22% Similarity=0.357 Sum_probs=83.8
Q ss_pred ccccCCCEEEEEcCChh-HHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361 139 GSKFSGKSVGIVGLGRI-GTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV 217 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~i-G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~ 217 (313)
+.+|+||++.|||-++| |+.++.+|...++.|.++.... .++.+..++||+|+.++- -.+++.++.
T Consensus 151 ~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T---------~~l~~~~k~ADIvv~AvG----~p~~i~~d~ 217 (283)
T COG0190 151 GIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT---------KDLASITKNADIVVVAVG----KPHFIKADM 217 (283)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC---------CCHHHHhhhCCEEEEecC----Ccccccccc
Confidence 45799999999999985 8999999999999999887654 368899999999999984 366777644
Q ss_pred HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHH
Q 021361 218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETS 288 (313)
Q Consensus 218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~ 288 (313)
.|+|+++|++|--.+-+ +++. =||-.++- ..-.-.+||--||--.=+.
T Consensus 218 ---vk~gavVIDVGinrv~~----------~kl~---GDVdf~~v-------~~~a~~iTPVPGGVGPmTv 265 (283)
T COG0190 218 ---VKPGAVVIDVGINRVND----------GKLV---GDVDFDSV-------KEKASAITPVPGGVGPMTV 265 (283)
T ss_pred ---ccCCCEEEecCCccccC----------CceE---eeccHHHH-------HHhhcccCCCCCccCHHHH
Confidence 68999999998655433 4443 45532221 1123467887777655433
No 169
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.88 E-value=2.6e-05 Score=71.66 Aligned_cols=108 Identities=15% Similarity=0.215 Sum_probs=71.0
Q ss_pred ccCCCEEEEEcCChhHHHHHHHHHhcC-CcEEEECCCCccccc----c------cccCCHHHHHhhCCeeEEecCCChHh
Q 021361 141 KFSGKSVGIVGLGRIGTAIAKRVEAFG-CPISYHSRSEKSDAN----Y------KYYTNIIDLASNCQILIVACSLTEET 209 (313)
Q Consensus 141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~----~------~~~~~l~~l~~~aDvv~l~~p~~~~t 209 (313)
.+.++++.|+|.|.+|++++..|...| .+|++++|+.++... . ....+..+.+.++|+|+.++|..-..
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~ 199 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSG 199 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCC
Confidence 577899999999999999999999999 589999998754211 0 00013346678899999999864321
Q ss_pred hhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 021361 210 HHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRL 250 (313)
Q Consensus 210 ~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~ 250 (313)
..-...-.++.++++.+++++.-.+ .. ..|++..++..+
T Consensus 200 ~~~~~~~~~~~l~~~~~v~DivY~P-~~-T~ll~~A~~~G~ 238 (278)
T PRK00258 200 ELPLPPLPLSLLRPGTIVYDMIYGP-LP-TPFLAWAKAQGA 238 (278)
T ss_pred CCCCCCCCHHHcCCCCEEEEeecCC-CC-CHHHHHHHHCcC
Confidence 1101111234567788888887644 33 344444444433
No 170
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.84 E-value=4.9e-05 Score=65.95 Aligned_cols=94 Identities=14% Similarity=0.154 Sum_probs=60.0
Q ss_pred ccccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccccc----------cc--c--c---CCHHHHHhhCCeeE
Q 021361 139 GSKFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDAN----------YK--Y--Y---TNIIDLASNCQILI 200 (313)
Q Consensus 139 ~~~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~----------~~--~--~---~~l~~l~~~aDvv~ 200 (313)
+..++++++.|+|. |.+|+.+++.|...|++|..++|+.++... .. . . .++.+.++++|+|+
T Consensus 23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi 102 (194)
T cd01078 23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVF 102 (194)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEE
Confidence 34578999999996 999999999999999999999987542110 00 0 1 12345677788877
Q ss_pred EecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCcc
Q 021361 201 VACSLTEETHHIVNRKVIDALGPSGILINIGRGAHI 236 (313)
Q Consensus 201 l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~v 236 (313)
.+.|....+ .+.. -...+++.+++|+.+...+
T Consensus 103 ~at~~g~~~--~~~~--~~~~~~~~vv~D~~~~~~~ 134 (194)
T cd01078 103 AAGAAGVEL--LEKL--AWAPKPLAVAADVNAVPPV 134 (194)
T ss_pred ECCCCCcee--chhh--hcccCceeEEEEccCCCCC
Confidence 777654321 1111 1123446677776665544
No 171
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.83 E-value=8.8e-05 Score=68.46 Aligned_cols=80 Identities=19% Similarity=0.390 Sum_probs=64.8
Q ss_pred ccccCCCEEEEEcCCh-hHHHHHHHHHh----cCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhcc
Q 021361 139 GSKFSGKSVGIVGLGR-IGTAIAKRVEA----FGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIV 213 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~----~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i 213 (313)
+.++.||++.|||-+. +|+.+|.+|.. .|+.|..+.... .++.+.+++||+|+.+++. .++|
T Consensus 154 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t---------~~l~~~~~~ADIvI~Avg~----~~li 220 (295)
T PRK14174 154 NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT---------KDIPSYTRQADILIAAIGK----ARFI 220 (295)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc---------hhHHHHHHhCCEEEEecCc----cCcc
Confidence 3579999999999987 69999999976 577877665432 3589999999999999954 2678
Q ss_pred CHHHHhhcCCCcEEEEcCCCC
Q 021361 214 NRKVIDALGPSGILINIGRGA 234 (313)
Q Consensus 214 ~~~~l~~mk~ga~~in~~rg~ 234 (313)
.++.+ |+|+++||+|-..
T Consensus 221 ~~~~v---k~GavVIDVgi~~ 238 (295)
T PRK14174 221 TADMV---KPGAVVIDVGINR 238 (295)
T ss_pred CHHHc---CCCCEEEEeeccc
Confidence 88775 9999999998544
No 172
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.82 E-value=6.9e-05 Score=68.77 Aligned_cols=79 Identities=18% Similarity=0.361 Sum_probs=65.1
Q ss_pred ccccCCCEEEEEcCCh-hHHHHHHHHHh----cCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhcc
Q 021361 139 GSKFSGKSVGIVGLGR-IGTAIAKRVEA----FGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIV 213 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~----~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i 213 (313)
+.++.||++.|||-+. +|+.++.+|.. .++.|..+.... .++.+.+++||+|+.+++. .+++
T Consensus 152 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t---------~~l~~~~~~ADIVI~AvG~----p~li 218 (286)
T PRK14184 152 GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT---------PDLAEECREADFLFVAIGR----PRFV 218 (286)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc---------hhHHHHHHhCCEEEEecCC----CCcC
Confidence 4578999999999987 69999999987 788887766432 3699999999999999943 5678
Q ss_pred CHHHHhhcCCCcEEEEcCCC
Q 021361 214 NRKVIDALGPSGILINIGRG 233 (313)
Q Consensus 214 ~~~~l~~mk~ga~~in~~rg 233 (313)
.++.+ |+|+++||+|--
T Consensus 219 ~~~~v---k~GavVIDVGi~ 235 (286)
T PRK14184 219 TADMV---KPGAVVVDVGIN 235 (286)
T ss_pred CHHHc---CCCCEEEEeeee
Confidence 87665 999999999843
No 173
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.82 E-value=4.5e-05 Score=71.70 Aligned_cols=85 Identities=19% Similarity=0.281 Sum_probs=64.6
Q ss_pred CCEEEEEcCChhHHHHHHHHHh-c-CCcEEEECCCCcccc---------c--ccccCCHHHHHhhCCeeEEecCCChHhh
Q 021361 144 GKSVGIVGLGRIGTAIAKRVEA-F-GCPISYHSRSEKSDA---------N--YKYYTNIIDLASNCQILIVACSLTEETH 210 (313)
Q Consensus 144 g~~vgiiG~G~iG~~~a~~l~~-~-g~~V~~~~~~~~~~~---------~--~~~~~~l~~l~~~aDvv~l~~p~~~~t~ 210 (313)
-+++||||.|.+|+..++.+.. + ..+|.+|||+.++.. + ...+.+.++++++||+|++|+|. ..
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s---~~ 204 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPS---RK 204 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCC---CC
Confidence 4689999999999997777653 2 346899999876421 2 23357899999999999999985 34
Q ss_pred hccCHHHHhhcCCCcEEEEcCCCC
Q 021361 211 HIVNRKVIDALGPSGILINIGRGA 234 (313)
Q Consensus 211 ~~i~~~~l~~mk~ga~~in~~rg~ 234 (313)
.++..+. +|||+.+..+|...
T Consensus 205 P~~~~~~---l~~g~~v~~vGs~~ 225 (325)
T TIGR02371 205 PVVKADW---VSEGTHINAIGADA 225 (325)
T ss_pred cEecHHH---cCCCCEEEecCCCC
Confidence 5666543 69999999998543
No 174
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.82 E-value=0.00011 Score=67.64 Aligned_cols=80 Identities=18% Similarity=0.327 Sum_probs=64.9
Q ss_pred ccccCCCEEEEEcCCh-hHHHHHHHHHhc----CCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhcc
Q 021361 139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAF----GCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIV 213 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~----g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i 213 (313)
+.++.||++.|||-+. +|+.++.+|... ++.|+++.... .++.+..++||+|+.+++- .+++
T Consensus 152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T---------~nl~~~~~~ADIvIsAvGk----p~~i 218 (293)
T PRK14185 152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS---------KNLKKECLEADIIIAALGQ----PEFV 218 (293)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC---------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 3469999999999987 699999999876 67888775432 3689999999999999964 5567
Q ss_pred CHHHHhhcCCCcEEEEcCCCC
Q 021361 214 NRKVIDALGPSGILINIGRGA 234 (313)
Q Consensus 214 ~~~~l~~mk~ga~~in~~rg~ 234 (313)
..+. .|+|+++||+|--.
T Consensus 219 ~~~~---vk~gavVIDvGin~ 236 (293)
T PRK14185 219 KADM---VKEGAVVIDVGTTR 236 (293)
T ss_pred CHHH---cCCCCEEEEecCcc
Confidence 7754 68999999998644
No 175
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.81 E-value=9.3e-05 Score=68.30 Aligned_cols=135 Identities=19% Similarity=0.250 Sum_probs=89.3
Q ss_pred ccccCCCEEEEEcCCh-hHHHHHHHHHhc----CCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhcc
Q 021361 139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAF----GCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIV 213 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~----g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i 213 (313)
+.++.||++.|||-+. +|+.+|.+|... ++.|+.+.... .++.+..++||+|+.++.- .+++
T Consensus 156 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T---------~~l~~~~~~ADIvVsAvGk----p~~i 222 (297)
T PRK14168 156 GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS---------KNLARHCQRADILIVAAGV----PNLV 222 (297)
T ss_pred CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC---------cCHHHHHhhCCEEEEecCC----cCcc
Confidence 4579999999999987 799999999876 68888765432 3688999999999999853 5578
Q ss_pred CHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHH
Q 021361 214 NRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMAD 293 (313)
Q Consensus 214 ~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~ 293 (313)
..+. .|+|+++||+|-..+.+. ..+|+.. ..=||-.. ..... --.+||=-||--.-+..-+.+
T Consensus 223 ~~~~---ik~gavVIDvGin~~~~~------~~~g~~~-~~GDVdfe------~v~~~-a~~iTPVPGGVGp~T~a~L~~ 285 (297)
T PRK14168 223 KPEW---IKPGATVIDVGVNRVGTN------ESTGKAI-LSGDVDFD------AVKEI-AGKITPVPGGVGPMTIAMLMR 285 (297)
T ss_pred CHHH---cCCCCEEEecCCCccCcc------ccCCCcc-eeccccHH------HHHhh-ccEecCCCCCchHHHHHHHHH
Confidence 8765 689999999996543211 1234311 23455211 11111 135888777766555555555
Q ss_pred HHHHHHHHHH
Q 021361 294 LVIENLVAHF 303 (313)
Q Consensus 294 ~~~~ni~~~~ 303 (313)
.+++..++|+
T Consensus 286 N~~~a~~~~~ 295 (297)
T PRK14168 286 NTLKSAKFHL 295 (297)
T ss_pred HHHHHHHHHh
Confidence 5555555554
No 176
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.80 E-value=9.4e-05 Score=67.67 Aligned_cols=105 Identities=13% Similarity=0.106 Sum_probs=73.2
Q ss_pred cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc---------cccccCCHHHH-HhhCCeeEEecCCC--hHh
Q 021361 142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA---------NYKYYTNIIDL-ASNCQILIVACSLT--EET 209 (313)
Q Consensus 142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~---------~~~~~~~l~~l-~~~aDvv~l~~p~~--~~t 209 (313)
..+++++|+|.|.+|++++..|...|++|.+++|+.++.. +.....++++. ..++|+|+.++|.. +..
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~ 194 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI 194 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence 4578999999999999999999999999999999864321 11112234433 35799999999974 222
Q ss_pred hh-ccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361 210 HH-IVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA 251 (313)
Q Consensus 210 ~~-~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ 251 (313)
.. .+. .+.++++.+++|+.-.+... .|.+..++..+.
T Consensus 195 ~~~~~~---~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~ 232 (270)
T TIGR00507 195 DEPPVP---AEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTK 232 (270)
T ss_pred CCCCCC---HHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCe
Confidence 11 222 35578999999998776533 577777666554
No 177
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.80 E-value=9.9e-05 Score=68.12 Aligned_cols=80 Identities=15% Similarity=0.331 Sum_probs=64.7
Q ss_pred ccccCCCEEEEEcCCh-hHHHHHHHHHhc----CCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhcc
Q 021361 139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAF----GCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIV 213 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~----g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i 213 (313)
+..+.||++.|||-+. +|+.+|.+|... ++.|.++.... .++.+..++||+|+.++.- .+++
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T---------~~l~~~~~~ADIvIsAvGk----p~~i 218 (297)
T PRK14167 152 GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT---------DDLAAKTRRADIVVAAAGV----PELI 218 (297)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC---------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 4469999999999987 699999999865 78888765432 3688999999999998843 5578
Q ss_pred CHHHHhhcCCCcEEEEcCCCC
Q 021361 214 NRKVIDALGPSGILINIGRGA 234 (313)
Q Consensus 214 ~~~~l~~mk~ga~~in~~rg~ 234 (313)
..+. .|+|+++||+|-..
T Consensus 219 ~~~~---ik~gaiVIDvGin~ 236 (297)
T PRK14167 219 DGSM---LSEGATVIDVGINR 236 (297)
T ss_pred CHHH---cCCCCEEEEccccc
Confidence 8755 68999999998544
No 178
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.79 E-value=8.5e-05 Score=68.74 Aligned_cols=102 Identities=17% Similarity=0.284 Sum_probs=71.1
Q ss_pred EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc-----cccc-------------cccCCHHHHHhhCCeeEEecCCCh
Q 021361 146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS-----DANY-------------KYYTNIIDLASNCQILIVACSLTE 207 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~-----~~~~-------------~~~~~l~~l~~~aDvv~l~~p~~~ 207 (313)
+|+|||.|.||..+|..|...|.+|..++| .+. ..+. ....+.++....+|+|++++|..
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~- 79 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY- 79 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc-
Confidence 699999999999999999999999999998 321 0110 01235566668899999999954
Q ss_pred HhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361 208 ETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA 251 (313)
Q Consensus 208 ~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ 251 (313)
.+...+ +.....++++.++|.+.-| +-..+.+.+.+.+.++.
T Consensus 80 ~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~ 121 (305)
T PRK12921 80 QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL 121 (305)
T ss_pred CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence 333333 3344556778888877655 44567777777665544
No 179
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=97.78 E-value=7.4e-05 Score=70.21 Aligned_cols=93 Identities=12% Similarity=0.163 Sum_probs=63.0
Q ss_pred ccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHh
Q 021361 141 KFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVID 219 (313)
Q Consensus 141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~ 219 (313)
.+.|+++.|||.|.||+.+++.|...|. +|++.+|+.....-.......-+...++|+|+.+...|......+..+.++
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~ 250 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSWESLA 250 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeHHHHh
Confidence 5899999999999999999999999996 599999987531110100111245679999998753344444566666655
Q ss_pred hcCCCcEEEEcCCCC
Q 021361 220 ALGPSGILINIGRGA 234 (313)
Q Consensus 220 ~mk~ga~~in~~rg~ 234 (313)
..++ -+|||.+=..
T Consensus 251 ~~~~-r~~iDLAvPR 264 (338)
T PRK00676 251 DIPD-RIVFDFNVPR 264 (338)
T ss_pred hccC-cEEEEecCCC
Confidence 4332 3777765333
No 180
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.77 E-value=9.5e-05 Score=70.50 Aligned_cols=91 Identities=15% Similarity=0.231 Sum_probs=64.7
Q ss_pred CEEEEEcCChhHHHHHHHHHhcC-------CcEEEECCCCcc----c--------------cc------ccccCCHHHHH
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFG-------CPISYHSRSEKS----D--------------AN------YKYYTNIIDLA 193 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g-------~~V~~~~~~~~~----~--------------~~------~~~~~~l~~l~ 193 (313)
.+|+|||.|++|.++|..|...| .+|..|.|.++. . .+ .....++++++
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav 91 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV 91 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence 58999999999999999998766 788888776631 0 11 12246788999
Q ss_pred hhCCeeEEecCCChHhhhccCHHHHh--hcCCCcEEEEcCCCCccC
Q 021361 194 SNCQILIVACSLTEETHHIVNRKVID--ALGPSGILINIGRGAHID 237 (313)
Q Consensus 194 ~~aDvv~l~~p~~~~t~~~i~~~~l~--~mk~ga~~in~~rg~~vd 237 (313)
+.||+|++++|.. ..+.++. +.-. .+++++++|+++.|=-.+
T Consensus 92 ~~aDiIvlAVPsq-~l~~vl~-~l~~~~~l~~~~~iIS~aKGIe~~ 135 (365)
T PTZ00345 92 EDADLLIFVIPHQ-FLESVLS-QIKENNNLKKHARAISLTKGIIVE 135 (365)
T ss_pred hcCCEEEEEcChH-HHHHHHH-HhccccccCCCCEEEEEeCCcccC
Confidence 9999999999852 3333332 2223 466678999998774433
No 181
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.77 E-value=0.00017 Score=66.52 Aligned_cols=102 Identities=17% Similarity=0.217 Sum_probs=70.5
Q ss_pred EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccc-----------cccCCHHHHHhhCCeeEEecCCChHh
Q 021361 146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANY-----------KYYTNIIDLASNCQILIVACSLTEET 209 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~-----------~~~~~l~~l~~~aDvv~l~~p~~~~t 209 (313)
+|+|||.|.||..+|..|...|.+|..++|+.+.. .+. ....+..++ +.+|+|++++|.. ++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~~ 79 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-QL 79 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-cH
Confidence 69999999999999999999999999999854321 121 112345555 8899999999954 34
Q ss_pred hhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361 210 HHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA 251 (313)
Q Consensus 210 ~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ 251 (313)
...+. .....+.+++.+|...-| +-.++.+.+.+...++.
T Consensus 80 ~~~~~-~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~ 119 (304)
T PRK06522 80 PAALP-SLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVL 119 (304)
T ss_pred HHHHH-HHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEE
Confidence 43332 344556777888887776 33456666666555554
No 182
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.73 E-value=0.00016 Score=63.26 Aligned_cols=95 Identities=17% Similarity=0.221 Sum_probs=70.1
Q ss_pred cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCC---Ccc---------ccc-----------------cc--c--
Q 021361 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRS---EKS---------DAN-----------------YK--Y-- 185 (313)
Q Consensus 140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~---~~~---------~~~-----------------~~--~-- 185 (313)
..|+.++|+|+|.|.+|..+|+.|...|. ++..+|+. .+. ..+ .. .
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~ 96 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD 96 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence 46889999999999999999999999999 58888876 211 000 00 0
Q ss_pred ----cCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCc
Q 021361 186 ----YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAH 235 (313)
Q Consensus 186 ----~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~ 235 (313)
..+++++++++|+|+-+ ..+.+++.++.......++...++...+-++.
T Consensus 97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~g~~g~ 149 (200)
T TIGR02354 97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAASGLAGY 149 (200)
T ss_pred eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEeccccC
Confidence 12355678899999988 57888998888888888877666665444443
No 183
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.72 E-value=8.3e-05 Score=65.24 Aligned_cols=93 Identities=25% Similarity=0.264 Sum_probs=65.8
Q ss_pred EEEEEcCChhHHHHHHHHHhc--CCc-EEEECCCCcccc------cccccCCHHHHHhhCCeeEEecCCChHhhhccCHH
Q 021361 146 SVGIVGLGRIGTAIAKRVEAF--GCP-ISYHSRSEKSDA------NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRK 216 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~--g~~-V~~~~~~~~~~~------~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~ 216 (313)
+|||||+|.||+.+.+.++.- .++ +.+||++.++.. +.....++++++++.|+++=|..- ...+ -+
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~-~Av~-e~--- 76 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASP-EAVR-EY--- 76 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCH-HHHH-HH---
Confidence 799999999999999999843 455 678999886542 122347899999999999987742 2222 12
Q ss_pred HHhhcCCCcEEEEcCCCCccCHHHHHH
Q 021361 217 VIDALGPSGILINIGRGAHIDEPELVS 243 (313)
Q Consensus 217 ~l~~mk~ga~~in~~rg~~vd~~al~~ 243 (313)
..+.|+.|--+|-+|-|.+.|+.-+.+
T Consensus 77 ~~~~L~~g~d~iV~SVGALad~~l~er 103 (255)
T COG1712 77 VPKILKAGIDVIVMSVGALADEGLRER 103 (255)
T ss_pred hHHHHhcCCCEEEEechhccChHHHHH
Confidence 334466776677777788887765443
No 184
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.64 E-value=0.0013 Score=58.71 Aligned_cols=104 Identities=22% Similarity=0.348 Sum_probs=69.3
Q ss_pred cccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc---ccc------------------c--cccCCHHHHH-hh
Q 021361 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS---DAN------------------Y--KYYTNIIDLA-SN 195 (313)
Q Consensus 140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~---~~~------------------~--~~~~~l~~l~-~~ 195 (313)
.+++|++|.|.|+|++|+.+|+.|..+|++|+++..+... +.+ + ....+.++++ .+
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~~ 106 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLELD 106 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceeec
Confidence 4689999999999999999999999999998854433210 000 0 0011233333 36
Q ss_pred CCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361 196 CQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA 251 (313)
Q Consensus 196 aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ 251 (313)
||+++-|.+ .+.|+.+...+++ =.+++-.+-+++ . ....+.|.++.+.
T Consensus 107 ~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~-t-~~a~~~L~~rGi~ 154 (227)
T cd01076 107 CDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPT-T-PEADEILHERGVL 154 (227)
T ss_pred ccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCC-C-HHHHHHHHHCCCE
Confidence 888887764 4567888888886 345555555665 4 5556788888776
No 185
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.64 E-value=0.00013 Score=68.48 Aligned_cols=83 Identities=19% Similarity=0.223 Sum_probs=60.1
Q ss_pred EEEEcCChhHHHHHHHHHh-cCCcEEEE-CCCCccc------cc------------------ccccCCHHHHHhhCCeeE
Q 021361 147 VGIVGLGRIGTAIAKRVEA-FGCPISYH-SRSEKSD------AN------------------YKYYTNIIDLASNCQILI 200 (313)
Q Consensus 147 vgiiG~G~iG~~~a~~l~~-~g~~V~~~-~~~~~~~------~~------------------~~~~~~l~~l~~~aDvv~ 200 (313)
|||+|||.||+.+++.+.. -+++|.++ |..++.. .+ .....++++++.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 6999999999999998764 46776654 4333210 01 111346999999999999
Q ss_pred EecCCChHhhhccCHHHHhhcCCCcEEEEcCC
Q 021361 201 VACSLTEETHHIVNRKVIDALGPSGILINIGR 232 (313)
Q Consensus 201 l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~r 232 (313)
.|+| .+.+..+++.+..|+.+++|+-.-.
T Consensus 81 e~Tp---~~~~~~na~~~~~~GakaVl~~~p~ 109 (333)
T TIGR01546 81 DATP---GGIGAKNKPLYEKAGVKAIFQGGEK 109 (333)
T ss_pred ECCC---CCCChhhHHHHHhCCcCEEEECCCC
Confidence 8876 4566788899999999988887543
No 186
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=97.63 E-value=0.00032 Score=55.91 Aligned_cols=100 Identities=21% Similarity=0.377 Sum_probs=71.5
Q ss_pred CEEEEEc----CChhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhh
Q 021361 145 KSVGIVG----LGRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDA 220 (313)
Q Consensus 145 ~~vgiiG----~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~ 220 (313)
|+|+||| -|..|..+.+.|+..|++|+..++......+...+.+++|.-...|++++++|. +.+..++++ +..
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~-~~~~~~v~~--~~~ 77 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPP-DKVPEIVDE--AAA 77 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-H-HHHHHHHHH--HHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCH-HHHHHHHHH--HHH
Confidence 6899999 788999999999999999999999988777888888999855789999999984 334444432 233
Q ss_pred cCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361 221 LGPSGILINIGRGAHIDEPELVSALLEGRLA 251 (313)
Q Consensus 221 mk~ga~~in~~rg~~vd~~al~~al~~g~~~ 251 (313)
+..+.+++..+ ..++++.+.+++..+.
T Consensus 78 ~g~~~v~~~~g----~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 78 LGVKAVWLQPG----AESEELIEAAREAGIR 104 (116)
T ss_dssp HT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred cCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence 46678888887 7778888888887776
No 187
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.63 E-value=0.00021 Score=66.59 Aligned_cols=86 Identities=12% Similarity=0.119 Sum_probs=66.1
Q ss_pred CCCEEEEEcCChhHHHHHHHHHh-cCC-cEEEECCCCcccc---------cccc-cCCHHHHHhhCCeeEEecCCChHhh
Q 021361 143 SGKSVGIVGLGRIGTAIAKRVEA-FGC-PISYHSRSEKSDA---------NYKY-YTNIIDLASNCQILIVACSLTEETH 210 (313)
Q Consensus 143 ~g~~vgiiG~G~iG~~~a~~l~~-~g~-~V~~~~~~~~~~~---------~~~~-~~~l~~l~~~aDvv~l~~p~~~~t~ 210 (313)
..++++|||.|.+|+..++.+.. ++. +|.+|+|+.++.. +... +.+.+++++++|+|+.++|.+ .
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~---~ 200 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR---T 200 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC---C
Confidence 46799999999999999999864 675 5999999875421 1111 357899999999999999864 4
Q ss_pred hccCHHHHhhcCCCcEEEEcCCCCc
Q 021361 211 HIVNRKVIDALGPSGILINIGRGAH 235 (313)
Q Consensus 211 ~~i~~~~l~~mk~ga~~in~~rg~~ 235 (313)
.++.. .+|||+.++.+|.-..
T Consensus 201 Pl~~~----~~~~g~hi~~iGs~~p 221 (304)
T PRK07340 201 PVYPE----AARAGRLVVAVGAFTP 221 (304)
T ss_pred ceeCc----cCCCCCEEEecCCCCC
Confidence 56654 2699999999995443
No 188
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.61 E-value=0.0004 Score=72.03 Aligned_cols=111 Identities=17% Similarity=0.196 Sum_probs=81.1
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc----------------c-------------ccccCCHHHHHhh
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA----------------N-------------YKYYTNIIDLASN 195 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~~l~~~ 195 (313)
++|+|||.|.||..+|..+...|++|+.||++.+... + .....++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 5899999999999999999999999999998875310 0 1112455 44689
Q ss_pred CCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCC
Q 021361 196 CQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYE 259 (313)
Q Consensus 196 aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~ 259 (313)
||+|+=++|-+.+.+.-+-++.=+.++++++|.... +-+....|.+.+... -..+++--|.
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNT--Ssl~i~~la~~~~~p-~r~~g~Hff~ 453 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNT--STISISLLAKALKRP-ENFCGMHFFN 453 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcC--CCCCHHHHHhhcCCC-ccEEEEecCC
Confidence 999999999999988877777778889998875543 335667777776543 2223444443
No 189
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.60 E-value=0.00018 Score=68.07 Aligned_cols=87 Identities=17% Similarity=0.294 Sum_probs=63.1
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-------------c-c------ccccCCHHHHHhhCCeeEEecC
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-------------A-N------YKYYTNIIDLASNCQILIVACS 204 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-------------~-~------~~~~~~l~~l~~~aDvv~l~~p 204 (313)
.+|+|||.|.+|..+|..|...| .+..|.++++.. . + .....++++.++.+|+|++++|
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp 86 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP 86 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence 57999999999999999999988 677777653210 0 1 1224577888999999999999
Q ss_pred CChHhhhccCHHHHhhcCCCcEEEEcCCCC
Q 021361 205 LTEETHHIVNRKVIDALGPSGILINIGRGA 234 (313)
Q Consensus 205 ~~~~t~~~i~~~~l~~mk~ga~~in~~rg~ 234 (313)
. ..++..+. +....++++..+|++..|=
T Consensus 87 s-~~~~~vl~-~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 87 S-HGFRGVLT-ELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred H-HHHHHHHH-HHHhhcCCCCEEEEEEeCC
Confidence 3 34444433 3445678888899888864
No 190
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.56 E-value=0.0002 Score=69.46 Aligned_cols=86 Identities=24% Similarity=0.398 Sum_probs=61.1
Q ss_pred ccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcccc------c-c--cccCCHHHHHhhCCeeEEecCCChHhh
Q 021361 141 KFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDA------N-Y--KYYTNIIDLASNCQILIVACSLTEETH 210 (313)
Q Consensus 141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~------~-~--~~~~~l~~l~~~aDvv~l~~p~~~~t~ 210 (313)
.+.|+++.|||.|.||+.+++.|...|. +|++++|+.+... + . ..+.++.+.+.++|+|+.|++.. .
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~---~ 254 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL---E 254 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC---C
Confidence 5789999999999999999999999996 5999999875321 1 1 11245567789999999998753 3
Q ss_pred hccCHHHHhhcCCCcEEEEcC
Q 021361 211 HIVNRKVIDALGPSGILINIG 231 (313)
Q Consensus 211 ~~i~~~~l~~mk~ga~~in~~ 231 (313)
.+|..+... .+.-++||.+
T Consensus 255 ~vi~~~~~~--~~~~~~iDLa 273 (414)
T PRK13940 255 YIVTCKYVG--DKPRVFIDIS 273 (414)
T ss_pred eeECHHHhC--CCCeEEEEeC
Confidence 455554432 1224556554
No 191
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.55 E-value=0.00074 Score=63.03 Aligned_cols=155 Identities=13% Similarity=0.183 Sum_probs=117.7
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccccc----------ccccCCHHHHH---hhCCeeEEecCCChHhhh
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDAN----------YKYYTNIIDLA---SNCQILIVACSLTEETHH 211 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~----------~~~~~~l~~l~---~~aDvv~l~~p~~~~t~~ 211 (313)
..||+||++.||+.++......|+.|.+|+|+.++... .--..|+++++ ++-.+|++.+-.-.....
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~ 86 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ 86 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence 46999999999999999999999999999998865321 11135788874 567888888876666666
Q ss_pred ccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCC-cccCCCCcEEEcCCCCCCcHHHHHH
Q 021361 212 IVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVP-EQMLGLNNVVLLPHVGSDTEETSKA 290 (313)
Q Consensus 212 ~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~-~~l~~~pnvi~TPHia~~t~~~~~~ 290 (313)
+|. +...+|.+|-++|+-|....-|.+.-.+.|.+..+...+.-|...|--.. .|= -|-|.+.+++.+
T Consensus 87 ~I~-~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPS----------lMpGg~~~Awp~ 155 (487)
T KOG2653|consen 87 FIE-ELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPS----------LMPGGSKEAWPH 155 (487)
T ss_pred HHH-HHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCc----------cCCCCChHHHHH
Confidence 665 47788999999999999999999999999999999999999998886432 221 134677888888
Q ss_pred HHHHHHHHHHHHHcCCCCCC
Q 021361 291 MADLVIENLVAHFSNKPLLT 310 (313)
Q Consensus 291 ~~~~~~~ni~~~~~g~~~~~ 310 (313)
+-.++-.---..-.|+|-+.
T Consensus 156 ik~ifq~iaakv~~~epCc~ 175 (487)
T KOG2653|consen 156 IKDIFQKIAAKVSDGEPCCD 175 (487)
T ss_pred HHHHHHHHHHHhcCCCCCee
Confidence 77766554333345555443
No 192
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.52 E-value=0.00024 Score=68.33 Aligned_cols=90 Identities=18% Similarity=0.366 Sum_probs=65.8
Q ss_pred ccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcccc------c--ccccCCHHHHHhhCCeeEEecCCChHhhh
Q 021361 141 KFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDA------N--YKYYTNIIDLASNCQILIVACSLTEETHH 211 (313)
Q Consensus 141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~------~--~~~~~~l~~l~~~aDvv~l~~p~~~~t~~ 211 (313)
.|.++++.|||.|.||.-+|+.|...|. +|++.+|+..+.. + +.....+.+.+.++|+|++++. ....
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs---a~~~ 251 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS---APHP 251 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC---CCcc
Confidence 4899999999999999999999999996 6899999986532 2 2224567778999999999875 3345
Q ss_pred ccCHHHHhhc-C--CCcEEEEcCCC
Q 021361 212 IVNRKVIDAL-G--PSGILINIGRG 233 (313)
Q Consensus 212 ~i~~~~l~~m-k--~ga~~in~~rg 233 (313)
++..+.+... + ++-++||.+=.
T Consensus 252 ii~~~~ve~a~~~r~~~livDiavP 276 (414)
T COG0373 252 IITREMVERALKIRKRLLIVDIAVP 276 (414)
T ss_pred ccCHHHHHHHHhcccCeEEEEecCC
Confidence 6666554433 1 12467777633
No 193
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=97.52 E-value=0.0021 Score=58.26 Aligned_cols=151 Identities=16% Similarity=0.131 Sum_probs=89.9
Q ss_pred cccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEE-CCCCc-------------------cccc------------ccccC
Q 021361 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYH-SRSEK-------------------SDAN------------YKYYT 187 (313)
Q Consensus 140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~-~~~~~-------------------~~~~------------~~~~~ 187 (313)
.+++|++|.|-|+|++|+.+|+.|...|++|++. |.+.. .... .+ ..
T Consensus 34 ~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~-~~ 112 (254)
T cd05313 34 ETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAK-YF 112 (254)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCE-Ee
Confidence 4689999999999999999999999999998844 42110 0000 11 11
Q ss_pred CHHHHH-hhCCeeEEecCCChHhhhccCHHHHhhcC--CCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCC
Q 021361 188 NIIDLA-SNCQILIVACSLTEETHHIVNRKVIDALG--PSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEV 264 (313)
Q Consensus 188 ~l~~l~-~~aDvv~l~~p~~~~t~~~i~~~~l~~mk--~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~ 264 (313)
+.++++ ..||+++-|. +.+.|+.+..++++ .=.+++-.+-+++-+ +-.+.|.++.+. ++=|+.-+-=-.
T Consensus 113 ~~~~~~~~~~DIliPcA-----l~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~-vvPD~laNaGGV 184 (254)
T cd05313 113 EGKKPWEVPCDIAFPCA-----TQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVL-FAPGKAANAGGV 184 (254)
T ss_pred CCcchhcCCCcEEEecc-----ccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcE-EECchhhcCCCe
Confidence 344443 3699887654 57789999888884 334666666777644 455778887776 333332221100
Q ss_pred C-c--ccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 021361 265 P-E--QMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFS 304 (313)
Q Consensus 265 ~-~--~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~ 304 (313)
- + ++.+ | .-|..|.-.+..+++.+.+.+..++.++
T Consensus 185 ivs~~E~~q--n---~~~~~w~~e~V~~~l~~~m~~~~~~v~~ 222 (254)
T cd05313 185 AVSGLEMSQ--N---SQRLSWTAEEVDAKLKDIMKNIHDACAE 222 (254)
T ss_pred eeeHHHhhc--c---cccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 1111 1 2233444455556666666666555543
No 194
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.52 E-value=0.00031 Score=65.89 Aligned_cols=87 Identities=20% Similarity=0.302 Sum_probs=61.3
Q ss_pred EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-------------cc------ccccCCHHHHH-hhCCeeEEecCC
Q 021361 146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-------------AN------YKYYTNIIDLA-SNCQILIVACSL 205 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-------------~~------~~~~~~l~~l~-~~aDvv~l~~p~ 205 (313)
+|+|||.|.||..+|..|...|.+|..|+|+.+.. .+ .....++++.+ ..+|+|++++|.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks 81 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPT 81 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCH
Confidence 69999999999999999999999999999865310 01 11234666766 589999999985
Q ss_pred ChHhhhccCHHHHh-hcCCCcEEEEcCCCC
Q 021361 206 TEETHHIVNRKVID-ALGPSGILINIGRGA 234 (313)
Q Consensus 206 ~~~t~~~i~~~~l~-~mk~ga~~in~~rg~ 234 (313)
. .+...+. +... .+++++.+|....|=
T Consensus 82 ~-~~~~~l~-~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 82 Q-QLRTICQ-QLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred H-HHHHHHH-HHHHhcCCCCCEEEEEEcCe
Confidence 3 4444433 2333 567777777766663
No 195
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.51 E-value=0.0036 Score=55.51 Aligned_cols=104 Identities=15% Similarity=0.218 Sum_probs=69.3
Q ss_pred cccCCCEEEEEcCChhHHHHHHHHHhcCCcEE-EECCCC----------ccc------ccccc-----cCCHHHHH-hhC
Q 021361 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCPIS-YHSRSE----------KSD------ANYKY-----YTNIIDLA-SNC 196 (313)
Q Consensus 140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~-~~~~~~----------~~~------~~~~~-----~~~l~~l~-~~a 196 (313)
.+|.|++|.|.|+|++|+.+|+.|...|.+|+ +.|.+. +.. ..... ..+.++++ .+|
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDV 98 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccc
Confidence 46899999999999999999999999999755 455544 100 00000 01223333 379
Q ss_pred CeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361 197 QILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA 251 (313)
Q Consensus 197 Dvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ 251 (313)
|+++-|.+ .+.|+.+....++ -.+++-.+-+++-+ .-.+.|.+..+.
T Consensus 99 DVlipaA~-----~~~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi~ 145 (217)
T cd05211 99 DIFAPCAL-----GNVIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERGIV 145 (217)
T ss_pred cEEeeccc-----cCccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence 99888775 3478888888886 45566666676655 345667666665
No 196
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.51 E-value=4.5e-05 Score=59.49 Aligned_cols=86 Identities=19% Similarity=0.248 Sum_probs=56.6
Q ss_pred ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc-cccccc-cCCHHHHHhhCCeeEEecCCChHhhhccCHHHH
Q 021361 141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS-DANYKY-YTNIIDLASNCQILIVACSLTEETHHIVNRKVI 218 (313)
Q Consensus 141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~-~~~~~~-~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l 218 (313)
.++|++|.|||.|.+|..=++.|...|++|+++++.... ...... ...+++.+..+|+|+.+++. +. +++...
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~~~~~~~~l~~~~lV~~at~d-~~----~n~~i~ 78 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSEGLIQLIRREFEEDLDGADLVFAATDD-PE----LNEAIY 78 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHHTSCEEEESS-GGGCTTESEEEE-SS--HH----HHHHHH
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhhhHHHHHhhhHHHHHhhheEEEecCCC-HH----HHHHHH
Confidence 588999999999999999999999999999999988411 111111 12344557789988877753 22 344455
Q ss_pred hhcCCCcEEEEcC
Q 021361 219 DALGPSGILINIG 231 (313)
Q Consensus 219 ~~mk~ga~~in~~ 231 (313)
...+.-.+++|+.
T Consensus 79 ~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 79 ADARARGILVNVV 91 (103)
T ss_dssp HHHHHTTSEEEET
T ss_pred HHHhhCCEEEEEC
Confidence 5556566777765
No 197
>PRK06046 alanine dehydrogenase; Validated
Probab=97.50 E-value=0.00039 Score=65.39 Aligned_cols=82 Identities=20% Similarity=0.320 Sum_probs=62.5
Q ss_pred CCEEEEEcCChhHHHHHHHHHh-cCCc-EEEECCCCcccc----------c--ccccCCHHHHHhhCCeeEEecCCChHh
Q 021361 144 GKSVGIVGLGRIGTAIAKRVEA-FGCP-ISYHSRSEKSDA----------N--YKYYTNIIDLASNCQILIVACSLTEET 209 (313)
Q Consensus 144 g~~vgiiG~G~iG~~~a~~l~~-~g~~-V~~~~~~~~~~~----------~--~~~~~~l~~l~~~aDvv~l~~p~~~~t 209 (313)
-+++||||.|.+|+..++.+.. .+.+ |.+|+|+.+... + ...+.+.+++++ +|+|++++|.+
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~--- 204 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR--- 204 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---
Confidence 3689999999999999998874 4554 788999875321 1 123568899887 99999999864
Q ss_pred hhccCHHHHhhcCCCcEEEEcCC
Q 021361 210 HHIVNRKVIDALGPSGILINIGR 232 (313)
Q Consensus 210 ~~~i~~~~l~~mk~ga~~in~~r 232 (313)
..++..+. +|+|+.+..+|.
T Consensus 205 ~P~~~~~~---l~~g~hV~~iGs 224 (326)
T PRK06046 205 KPVVKAEW---IKEGTHINAIGA 224 (326)
T ss_pred CcEecHHH---cCCCCEEEecCC
Confidence 46677654 589999998884
No 198
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.48 E-value=0.00026 Score=65.28 Aligned_cols=90 Identities=16% Similarity=0.106 Sum_probs=61.7
Q ss_pred cCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccccc-----------cc--ccCCHHHHHhhCCeeEEecCCCh
Q 021361 142 FSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDAN-----------YK--YYTNIIDLASNCQILIVACSLTE 207 (313)
Q Consensus 142 l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~-----------~~--~~~~l~~l~~~aDvv~l~~p~~~ 207 (313)
++++++.|||.|.+|++++..|...|+ +|+++||+..+... .. ...++.+.++++|+|+.++|.--
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm 204 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTGM 204 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCCC
Confidence 567999999999999999999999998 69999998653211 00 12344556788999999988631
Q ss_pred H-h-hhccCHHHHhhcCCCcEEEEcCCCC
Q 021361 208 E-T-HHIVNRKVIDALGPSGILINIGRGA 234 (313)
Q Consensus 208 ~-t-~~~i~~~~l~~mk~ga~~in~~rg~ 234 (313)
. . ...++. +.++++.+++|+.-.+
T Consensus 205 ~~~~~~~~~~---~~l~~~~~v~DivY~P 230 (284)
T PRK12549 205 AKHPGLPLPA---ELLRPGLWVADIVYFP 230 (284)
T ss_pred CCCCCCCCCH---HHcCCCcEEEEeeeCC
Confidence 1 1 111222 3456677777776554
No 199
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.48 E-value=0.00042 Score=65.16 Aligned_cols=84 Identities=12% Similarity=0.124 Sum_probs=63.7
Q ss_pred CCCEEEEEcCChhHHHHHHHHH-hcCC-cEEEECCCCcccc----------cc--cccCCHHHHHhhCCeeEEecCCChH
Q 021361 143 SGKSVGIVGLGRIGTAIAKRVE-AFGC-PISYHSRSEKSDA----------NY--KYYTNIIDLASNCQILIVACSLTEE 208 (313)
Q Consensus 143 ~g~~vgiiG~G~iG~~~a~~l~-~~g~-~V~~~~~~~~~~~----------~~--~~~~~l~~l~~~aDvv~l~~p~~~~ 208 (313)
..++++|||.|.+|+..+..+. ..+. +|.+|+|++++.. +. ..+.+++++++++|+|++++|..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~-- 203 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK-- 203 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence 3579999999999999887764 4566 5899999875421 11 23577899999999999999864
Q ss_pred hhhccCHHHHhhcCCCcEEEEcCCC
Q 021361 209 THHIVNRKVIDALGPSGILINIGRG 233 (313)
Q Consensus 209 t~~~i~~~~l~~mk~ga~~in~~rg 233 (313)
..++. +.+|+|+.++.+|.-
T Consensus 204 -~p~i~----~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 204 -TPVFS----EKLKKGVHINAVGSF 223 (325)
T ss_pred -CcchH----HhcCCCcEEEecCCC
Confidence 34554 456999999998754
No 200
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.47 E-value=0.0006 Score=61.81 Aligned_cols=99 Identities=18% Similarity=0.230 Sum_probs=66.6
Q ss_pred CEEEEEcCChhHHHHHHHHHhc---CCcE-EEECCCCccc----ccccccCCHHHH-HhhCCeeEEecCCChHhhhccCH
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAF---GCPI-SYHSRSEKSD----ANYKYYTNIIDL-ASNCQILIVACSLTEETHHIVNR 215 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~---g~~V-~~~~~~~~~~----~~~~~~~~l~~l-~~~aDvv~l~~p~~~~t~~~i~~ 215 (313)
++|||||+|.||+.+++.+..- ++++ .+++|..+.. ..+..+.+++++ ..+.|+|+=|.+- +.-.-..
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~~--~av~e~~- 79 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQ--QAIAEHA- 79 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCCH--HHHHHHH-
Confidence 5899999999999999998753 3554 4566654322 124456789997 5789999988853 2111122
Q ss_pred HHHhhcCCCcEEEEcCCCCccC---HHHHHHHHHhC
Q 021361 216 KVIDALGPSGILINIGRGAHID---EPELVSALLEG 248 (313)
Q Consensus 216 ~~l~~mk~ga~~in~~rg~~vd---~~al~~al~~g 248 (313)
.+.|+.|.-++-.|-|.+.| .+.|.++.+++
T Consensus 80 --~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~ 113 (267)
T PRK13301 80 --EGCLTAGLDMIICSAGALADDALRARLIAAAEAG 113 (267)
T ss_pred --HHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhC
Confidence 23356677788888899888 45556655553
No 201
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.47 E-value=0.00029 Score=66.09 Aligned_cols=38 Identities=32% Similarity=0.473 Sum_probs=35.4
Q ss_pred CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc
Q 021361 143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD 180 (313)
Q Consensus 143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~ 180 (313)
.|++|+|+|+|.+|....+.++++|++|+++|++.++.
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~ 203 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKL 203 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHH
Confidence 48999999999999999999999999999999998753
No 202
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.47 E-value=0.0024 Score=59.57 Aligned_cols=106 Identities=19% Similarity=0.286 Sum_probs=72.3
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc---cccc--------------ccCCHHHHHhhCCeeEEecCCCh
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD---ANYK--------------YYTNIIDLASNCQILIVACSLTE 207 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~---~~~~--------------~~~~l~~l~~~aDvv~l~~p~~~ 207 (313)
.+|+|||.|.||..+|..|...|++|.++.|+.... .+.. ...+. +....+|+|+++++...
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vilavK~~~ 84 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVGLKTTA 84 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEEecCCC
Confidence 589999999999999999999999999998865221 1100 11122 24568999999998643
Q ss_pred HhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEE
Q 021361 208 ETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAG 254 (313)
Q Consensus 208 ~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~ 254 (313)
+...+ +.....+++++.++...-| +-.++.+.+.+...++.++.
T Consensus 85 -~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~ 128 (313)
T PRK06249 85 -NALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGL 128 (313)
T ss_pred -hHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEe
Confidence 33322 2344456778888877555 45667777777766766543
No 203
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.47 E-value=0.00054 Score=64.46 Aligned_cols=84 Identities=14% Similarity=0.164 Sum_probs=64.7
Q ss_pred CCCEEEEEcCChhHHHHHHHHH-hcCC-cEEEECCCCcccc----------cc--cccCCHHHHHhhCCeeEEecCCChH
Q 021361 143 SGKSVGIVGLGRIGTAIAKRVE-AFGC-PISYHSRSEKSDA----------NY--KYYTNIIDLASNCQILIVACSLTEE 208 (313)
Q Consensus 143 ~g~~vgiiG~G~iG~~~a~~l~-~~g~-~V~~~~~~~~~~~----------~~--~~~~~l~~l~~~aDvv~l~~p~~~~ 208 (313)
..++++|||.|.+|+..++.+. ..+. +|.+|+|+.++.. +. ....++++.+++||+|+.++|.+
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~-- 205 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE-- 205 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC--
Confidence 3579999999999999999997 4675 5999999875421 11 22467899999999999999863
Q ss_pred hhhccCHHHHhhcCCCcEEEEcCC
Q 021361 209 THHIVNRKVIDALGPSGILINIGR 232 (313)
Q Consensus 209 t~~~i~~~~l~~mk~ga~~in~~r 232 (313)
..++..+. +|+|+.+..++.
T Consensus 206 -~p~i~~~~---l~~g~~i~~vg~ 225 (326)
T TIGR02992 206 -TPILHAEW---LEPGQHVTAMGS 225 (326)
T ss_pred -CcEecHHH---cCCCcEEEeeCC
Confidence 35666544 689998888874
No 204
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.45 E-value=0.00044 Score=65.18 Aligned_cols=95 Identities=20% Similarity=0.345 Sum_probs=70.5
Q ss_pred cccccCCCEEEEEcC-ChhHHHHHHHHHh-cCC-cEEEECCCCccccc------ccccCCHHHHHhhCCeeEEecCCChH
Q 021361 138 LGSKFSGKSVGIVGL-GRIGTAIAKRVEA-FGC-PISYHSRSEKSDAN------YKYYTNIIDLASNCQILIVACSLTEE 208 (313)
Q Consensus 138 ~~~~l~g~~vgiiG~-G~iG~~~a~~l~~-~g~-~V~~~~~~~~~~~~------~~~~~~l~~l~~~aDvv~l~~p~~~~ 208 (313)
.+..++|++|.|+|. |.||+.+++.|.. .|. +++.++|+...... .....++++.+.++|+|+.+....
T Consensus 149 lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~-- 226 (340)
T PRK14982 149 LGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMP-- 226 (340)
T ss_pred hccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCC--
Confidence 355789999999998 8999999999974 564 78889987543211 111246778999999888766432
Q ss_pred hhh-ccCHHHHhhcCCCcEEEEcCCCCccCH
Q 021361 209 THH-IVNRKVIDALGPSGILINIGRGAHIDE 238 (313)
Q Consensus 209 t~~-~i~~~~l~~mk~ga~~in~~rg~~vd~ 238 (313)
.. .++.+. ++++.++||.|+..=||.
T Consensus 227 -~~~~I~~~~---l~~~~~viDiAvPRDVd~ 253 (340)
T PRK14982 227 -KGVEIDPET---LKKPCLMIDGGYPKNLDT 253 (340)
T ss_pred -cCCcCCHHH---hCCCeEEEEecCCCCCCc
Confidence 34 377754 489999999999887774
No 205
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=97.45 E-value=0.0015 Score=60.61 Aligned_cols=115 Identities=21% Similarity=0.222 Sum_probs=80.6
Q ss_pred CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc----------------cc-------------ccccCCHHHHHh
Q 021361 144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD----------------AN-------------YKYYTNIIDLAS 194 (313)
Q Consensus 144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----------------~~-------------~~~~~~l~~l~~ 194 (313)
-++|||||.|.||+.+|..+..-|++|..+|++.+.. .+ .....++. .++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence 4799999999999999999999779999999985421 00 00112233 688
Q ss_pred hCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCC
Q 021361 195 NCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEP 262 (313)
Q Consensus 195 ~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP 262 (313)
+||+|+=++|-+-+.++-+-++.=...+|+++|=.-.++ +...++.++++.. =...++=-|.+-|
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs--l~it~ia~~~~rp-er~iG~HFfNP~~ 146 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS--LSITELAEALKRP-ERFIGLHFFNPVP 146 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC--CCHHHHHHHhCCc-hhEEEEeccCCCC
Confidence 999999999999898887777676778899987543222 5567777777433 2234444444333
No 206
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.45 E-value=0.0007 Score=70.38 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=82.1
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc----------------c-------------ccccCCHHHHHhh
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA----------------N-------------YKYYTNIIDLASN 195 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~~l~~~ 195 (313)
++|+|||.|.||..+|..+...|++|..+|++++... + .....+++ .+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 5899999999999999999999999999998875310 0 11124554 5689
Q ss_pred CCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCC
Q 021361 196 CQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYE 259 (313)
Q Consensus 196 aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~ 259 (313)
||+|+=++|-+-+.+.-+-++.=+.++++++|... -+-++...|.+.++... ..+++--|.
T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasN--TSsl~i~~la~~~~~p~-r~ig~Hff~ 475 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASN--TSALPIKDIAAVSSRPE-KVIGMHYFS 475 (737)
T ss_pred CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEc--CCCCCHHHHHhhcCCcc-ceEEEeccC
Confidence 99999999999898887777777889999987643 33466777777765432 234555554
No 207
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.43 E-value=0.00034 Score=65.49 Aligned_cols=87 Identities=16% Similarity=0.196 Sum_probs=55.2
Q ss_pred CEEEEEcCChhHHHHHHHHHh-cCC-cEEEECCCCccc--------c-c--ccccCCHHHHHhhCCeeEEecCCChHhhh
Q 021361 145 KSVGIVGLGRIGTAIAKRVEA-FGC-PISYHSRSEKSD--------A-N--YKYYTNIIDLASNCQILIVACSLTEETHH 211 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~-~g~-~V~~~~~~~~~~--------~-~--~~~~~~l~~l~~~aDvv~l~~p~~~~t~~ 211 (313)
+++||||.|..|+.-++.+.. ++. +|.+|+|+++.. . + ...+.+.++++++||+|+.++|.+..+ .
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-P 207 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-P 207 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-E
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-c
Confidence 589999999999998888764 666 599999987532 1 1 223678999999999999988865432 6
Q ss_pred ccCHHHHhhcCCCcEEEEcCCCCc
Q 021361 212 IVNRKVIDALGPSGILINIGRGAH 235 (313)
Q Consensus 212 ~i~~~~l~~mk~ga~~in~~rg~~ 235 (313)
+++.+ .++||+.++.+|....
T Consensus 208 ~~~~~---~l~~g~hi~~iGs~~~ 228 (313)
T PF02423_consen 208 VFDAE---WLKPGTHINAIGSYTP 228 (313)
T ss_dssp SB-GG---GS-TT-EEEE-S-SST
T ss_pred cccHH---HcCCCcEEEEecCCCC
Confidence 77765 4789999999997654
No 208
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=97.39 E-value=0.0012 Score=68.35 Aligned_cols=111 Identities=18% Similarity=0.196 Sum_probs=79.3
Q ss_pred CEEEEEcCChhHHHHHHHHH-hcCCcEEEECCCCccc----------------cc-------------ccccCCHHHHHh
Q 021361 145 KSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSD----------------AN-------------YKYYTNIIDLAS 194 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~-~~g~~V~~~~~~~~~~----------------~~-------------~~~~~~l~~l~~ 194 (313)
++|+|||.|.||+.+|..+. ..|++|..||++++.. .+ .....++ +.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence 58999999999999999987 5899999999886421 00 0112455 4578
Q ss_pred hCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCC
Q 021361 195 NCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYE 259 (313)
Q Consensus 195 ~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~ 259 (313)
+||+|+=++|-+.+.+.-+-++.=+.++++++|.... +-+....|.+.++... ..+++--|.
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnT--S~l~i~~la~~~~~p~-r~~g~Hffn 445 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNT--SSLPIGQIAAAASRPE-NVIGLHYFS 445 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCC--CCCCHHHHHHhcCCcc-cEEEEecCC
Confidence 9999999999998888877777777789998876433 3356667777764322 224444443
No 209
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.38 E-value=0.00055 Score=67.74 Aligned_cols=100 Identities=14% Similarity=0.157 Sum_probs=64.7
Q ss_pred ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccccc----c-ccCCHHHH--HhhCCeeEEecCCChHhhh
Q 021361 139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANY----K-YYTNIIDL--ASNCQILIVACSLTEETHH 211 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~----~-~~~~l~~l--~~~aDvv~l~~p~~~~t~~ 211 (313)
+..++|++++|+|.|.+|++++..|...|++|.+++|+..+.... . ...+.+++ +.++|+|++|+|..-.
T Consensus 327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g~~--- 403 (477)
T PRK09310 327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPSVT--- 403 (477)
T ss_pred CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCCCc---
Confidence 446789999999999999999999999999999999876432110 0 11122332 4689999999987532
Q ss_pred ccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 021361 212 IVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRL 250 (313)
Q Consensus 212 ~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~ 250 (313)
+.. .+ . .+++++.-.+.... |.++.++..+
T Consensus 404 -~~~-~l---~--~~v~D~~Y~P~~T~--ll~~A~~~G~ 433 (477)
T PRK09310 404 -IPK-AF---P--PCVVDINTLPKHSP--YTQYARSQGS 433 (477)
T ss_pred -chh-HH---h--hhEEeccCCCCCCH--HHHHHHHCcC
Confidence 111 11 1 26667666553322 5555555443
No 210
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=97.38 E-value=0.0012 Score=68.47 Aligned_cols=100 Identities=21% Similarity=0.202 Sum_probs=76.4
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc----------------c-------------ccccCCHHHHHhh
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA----------------N-------------YKYYTNIIDLASN 195 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~~l~~~ 195 (313)
++|+|||.|.||..+|..+...|++|..+|++.+... + .....++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 5899999999999999999999999999998865310 0 1112345 34689
Q ss_pred CCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361 196 CQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLE 247 (313)
Q Consensus 196 aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~ 247 (313)
||+|+=++|-+-+.+.-+-++.=+.++|+++|-... +-++...|...++.
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnT--S~l~i~~ia~~~~~ 442 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNT--STISISLLAKALKR 442 (714)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECC--CCCCHHHHHhhcCC
Confidence 999999999988888877777778889999876543 33666777777654
No 211
>PLN02477 glutamate dehydrogenase
Probab=97.37 E-value=0.0043 Score=60.04 Aligned_cols=105 Identities=16% Similarity=0.278 Sum_probs=72.3
Q ss_pred ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEE-ECCCCcc--cc------------------ccc--ccCCHHHH-Hh
Q 021361 139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISY-HSRSEKS--DA------------------NYK--YYTNIIDL-AS 194 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~-~~~~~~~--~~------------------~~~--~~~~l~~l-~~ 194 (313)
+.+|.|++|.|.|+|++|+.+|+.|...|++|++ .|.+..- .. +.. ...+.+++ ..
T Consensus 201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~ 280 (410)
T PLN02477 201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVE 280 (410)
T ss_pred CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceec
Confidence 4578999999999999999999999999999884 4443110 00 000 01123333 34
Q ss_pred hCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361 195 NCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA 251 (313)
Q Consensus 195 ~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ 251 (313)
.||+++-|. ..+.|+++...+++ -.+++-.+-+++ ..+ -.+.|.+..+.
T Consensus 281 ~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~e-a~~~L~~rGI~ 329 (410)
T PLN02477 281 PCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DPE-ADEILRKKGVV 329 (410)
T ss_pred cccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CHH-HHHHHHHCCcE
Confidence 789887654 35678988888885 467777777887 444 45888888776
No 212
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.36 E-value=0.0014 Score=68.07 Aligned_cols=110 Identities=16% Similarity=0.179 Sum_probs=80.6
Q ss_pred CEEEEEcCChhHHHHHHHHH-hcCCcEEEECCCCcccc----------------c-------------ccccCCHHHHHh
Q 021361 145 KSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSDA----------------N-------------YKYYTNIIDLAS 194 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~-~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~~l~~ 194 (313)
++|+|||.|.||..+|..+. ..|++|..+|++++... + .....++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 68999999999999999988 78999999998764210 0 0112445 4578
Q ss_pred hCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCC
Q 021361 195 NCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVY 258 (313)
Q Consensus 195 ~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~ 258 (313)
+||+|+=++|-+.+.+.-+-++.=+.++|+++|.... +-++...|.+.+.... ..+++--|
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnT--S~l~i~~la~~~~~p~-r~ig~Hff 449 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNT--SSLPIGQIAAAAARPE-QVIGLHYF 449 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECC--CCCCHHHHHHhcCccc-ceEEEecC
Confidence 9999999999998888877777777899999887543 3466677777764322 22454444
No 213
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.35 E-value=0.00074 Score=63.24 Aligned_cols=83 Identities=14% Similarity=0.256 Sum_probs=64.1
Q ss_pred CCEEEEEcCChhHHHHHHHHHh-cCC-cEEEECCCCcccc---------c--ccccCCHHHHHhhCCeeEEecCCChHhh
Q 021361 144 GKSVGIVGLGRIGTAIAKRVEA-FGC-PISYHSRSEKSDA---------N--YKYYTNIIDLASNCQILIVACSLTEETH 210 (313)
Q Consensus 144 g~~vgiiG~G~iG~~~a~~l~~-~g~-~V~~~~~~~~~~~---------~--~~~~~~l~~l~~~aDvv~l~~p~~~~t~ 210 (313)
-++++|||.|..++.-++.+.. +.. +|.+|+|++++.. + ...+.+.++++++||+|+.+++. +.
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s---~~ 204 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPS---RE 204 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCC---CC
Confidence 4699999999999998887764 333 5999999986521 1 12256899999999999998874 45
Q ss_pred hccCHHHHhhcCCCcEEEEcCC
Q 021361 211 HIVNRKVIDALGPSGILINIGR 232 (313)
Q Consensus 211 ~~i~~~~l~~mk~ga~~in~~r 232 (313)
.+++.+. +|||+.++.+|.
T Consensus 205 P~~~~~~---l~~G~hi~~iGs 223 (315)
T PRK06823 205 PLLQAED---IQPGTHITAVGA 223 (315)
T ss_pred ceeCHHH---cCCCcEEEecCC
Confidence 6777654 689999999984
No 214
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=97.33 E-value=0.0011 Score=60.33 Aligned_cols=120 Identities=15% Similarity=0.181 Sum_probs=71.7
Q ss_pred HHHHHHhcC--CcEEEECCCCccc-----cccc-ccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEc
Q 021361 159 IAKRVEAFG--CPISYHSRSEKSD-----ANYK-YYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINI 230 (313)
Q Consensus 159 ~a~~l~~~g--~~V~~~~~~~~~~-----~~~~-~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~ 230 (313)
+|+.|+..| .+|++||+++... .++. ...+-.+.++++|+|++|+|.. .+..++ ++....+++|++++++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~-~~~~~l-~~~~~~~~~~~iv~Dv 78 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVS-AIEDVL-EEIAPYLKPGAIVTDV 78 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HH-HHHHHH-HHHHCGS-TTSEEEE-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHH-HHHHHH-HHhhhhcCCCcEEEEe
Confidence 578888877 6899999987643 1221 1122267899999999999964 344444 3466779999999999
Q ss_pred CCCCccCHHHHHHHHHhCCceEEE-ccCCCCCCCC----CcccCCCCcEEEcCCCC
Q 021361 231 GRGAHIDEPELVSALLEGRLAGAG-LDVYENEPEV----PEQMLGLNNVVLLPHVG 281 (313)
Q Consensus 231 ~rg~~vd~~al~~al~~g~~~ga~-lDV~~~EP~~----~~~l~~~pnvi~TPHia 281 (313)
+.-+---.+++.+.+..+ ....+ ==.|.+|-.. ...++.--++++||+-.
T Consensus 79 ~SvK~~~~~~~~~~~~~~-~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~ 133 (258)
T PF02153_consen 79 GSVKAPIVEAMERLLPEG-VRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED 133 (258)
T ss_dssp -S-CHHHHHHHHHHHTSS-GEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred CCCCHHHHHHHHHhcCcc-cceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence 887765566666666522 22221 1234444321 12577778999999865
No 215
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.32 E-value=0.00059 Score=65.50 Aligned_cols=88 Identities=24% Similarity=0.297 Sum_probs=66.5
Q ss_pred CCEEEEEcCChhHHHHHHHHHh-c-CC-cEEEECCCCcccc-----------c---ccccCCHHHHHhhCCeeEEecCCC
Q 021361 144 GKSVGIVGLGRIGTAIAKRVEA-F-GC-PISYHSRSEKSDA-----------N---YKYYTNIIDLASNCQILIVACSLT 206 (313)
Q Consensus 144 g~~vgiiG~G~iG~~~a~~l~~-~-g~-~V~~~~~~~~~~~-----------~---~~~~~~l~~l~~~aDvv~l~~p~~ 206 (313)
-+++||||.|..++.-++.+.. + .. +|.+|+|++.+.. + ...+.+.++++++||+|+.+++.+
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 3689999999999999988876 4 24 6999999875321 1 233578999999999999999754
Q ss_pred h---HhhhccCHHHHhhcCCCcEEEEcCCCC
Q 021361 207 E---ETHHIVNRKVIDALGPSGILINIGRGA 234 (313)
Q Consensus 207 ~---~t~~~i~~~~l~~mk~ga~~in~~rg~ 234 (313)
. ++..++..+. +|||+.++.+|.-+
T Consensus 235 ~~~~s~~Pv~~~~~---lkpG~hv~~ig~~e 262 (379)
T PRK06199 235 TGDPSTYPYVKREW---VKPGAFLLMPAACR 262 (379)
T ss_pred CCCCCcCcEecHHH---cCCCcEEecCCccc
Confidence 3 3457777654 68999888776643
No 216
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.31 E-value=0.0017 Score=61.07 Aligned_cols=82 Identities=18% Similarity=0.241 Sum_probs=66.4
Q ss_pred CEEEEEcCChhHHHHHHHHHh-cCC-cEEEECCCCcccc----------c--ccccCCHHHHHhhCCeeEEecCCChHhh
Q 021361 145 KSVGIVGLGRIGTAIAKRVEA-FGC-PISYHSRSEKSDA----------N--YKYYTNIIDLASNCQILIVACSLTEETH 210 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~-~g~-~V~~~~~~~~~~~----------~--~~~~~~l~~l~~~aDvv~l~~p~~~~t~ 210 (313)
+++||||.|..++.-++.++. ++. +|.+|+|+++... + +....+.+++++.||+|+.++|.++
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~--- 207 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE--- 207 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC---
Confidence 589999999999999998874 566 5999999886421 1 2346789999999999999998664
Q ss_pred hccCHHHHhhcCCCcEEEEcCC
Q 021361 211 HIVNRKVIDALGPSGILINIGR 232 (313)
Q Consensus 211 ~~i~~~~l~~mk~ga~~in~~r 232 (313)
.++..+. ++||+.+..+|.
T Consensus 208 Pil~~~~---l~~G~hI~aiGa 226 (330)
T COG2423 208 PVLKAEW---LKPGTHINAIGA 226 (330)
T ss_pred CeecHhh---cCCCcEEEecCC
Confidence 6777755 579999999994
No 217
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=97.30 E-value=0.0021 Score=54.03 Aligned_cols=89 Identities=12% Similarity=0.223 Sum_probs=67.1
Q ss_pred CCCEEEEEc--CChhHHHHHHHHHhcCCcEEEECCCCcc--c----------------ccccccCCHHHHHhhCCeeEEe
Q 021361 143 SGKSVGIVG--LGRIGTAIAKRVEAFGCPISYHSRSEKS--D----------------ANYKYYTNIIDLASNCQILIVA 202 (313)
Q Consensus 143 ~g~~vgiiG--~G~iG~~~a~~l~~~g~~V~~~~~~~~~--~----------------~~~~~~~~l~~l~~~aDvv~l~ 202 (313)
.|++|++|| .+++.++++..+..||+++.++.|..-. . .......++++.++++|+|..-
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~ 80 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD 80 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence 489999999 3899999999999999999988886621 1 0123457999999999998875
Q ss_pred cCCC---hH--------hhhccCHHHHhhcCCCcEEEEcC
Q 021361 203 CSLT---EE--------THHIVNRKVIDALGPSGILINIG 231 (313)
Q Consensus 203 ~p~~---~~--------t~~~i~~~~l~~mk~ga~~in~~ 231 (313)
.-.+ .+ ....++++.++.+|++++|..+.
T Consensus 81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L 120 (158)
T PF00185_consen 81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL 120 (158)
T ss_dssp SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence 5431 11 12467899999999999999987
No 218
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.30 E-value=0.0049 Score=58.70 Aligned_cols=145 Identities=12% Similarity=0.219 Sum_probs=100.0
Q ss_pred EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc------------cc-------------ccccCCHHHHHhhCCeeE
Q 021361 146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD------------AN-------------YKYYTNIIDLASNCQILI 200 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------------~~-------------~~~~~~l~~l~~~aDvv~ 200 (313)
+|.|+|.|-+|-..+..|..+|++|+.+|..+++. .+ ..+.++.++.++.+|+++
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~f 81 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVVF 81 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEEE
Confidence 79999999999999999999999999999766431 01 223578899999999999
Q ss_pred EecCCChHhhhccC--------HHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccC-CCCCCCCCc----c
Q 021361 201 VACSLTEETHHIVN--------RKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDV-YENEPEVPE----Q 267 (313)
Q Consensus 201 l~~p~~~~t~~~i~--------~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV-~~~EP~~~~----~ 267 (313)
+++|..+...+-+| ++..+.++..+++|+=|.-.+=-.+.+.+.+.+..-.. -.+| +.+|=+-.. .
T Consensus 82 IavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLREG~Av~D 160 (414)
T COG1004 82 IAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLREGSAVYD 160 (414)
T ss_pred EEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcCcchhhh
Confidence 99996554444444 34556677779999999888877777777766654332 2333 455655443 2
Q ss_pred cCCCCcEEEcCCCCCCcHHHHHHHHHHH
Q 021361 268 MLGLNNVVLLPHVGSDTEETSKAMADLV 295 (313)
Q Consensus 268 l~~~pnvi~TPHia~~t~~~~~~~~~~~ 295 (313)
.+..+++++ |..+..+.+.+.++.
T Consensus 161 ~~~PdRIVi----G~~~~~a~~~~~ely 184 (414)
T COG1004 161 FLYPDRIVI----GVRSERAAAVLRELY 184 (414)
T ss_pred ccCCCeEEE----ccCChhHHHHHHHHH
Confidence 444567764 445544444444433
No 219
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=97.30 E-value=0.00017 Score=63.32 Aligned_cols=117 Identities=24% Similarity=0.271 Sum_probs=79.9
Q ss_pred CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc---------------------c-------------ccccCC
Q 021361 143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA---------------------N-------------YKYYTN 188 (313)
Q Consensus 143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~---------------------~-------------~~~~~~ 188 (313)
.=+.|+|||.|.||..+|+.....|+.|+.+|++.+... . .+...+
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tn 89 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTN 89 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCC
Confidence 346899999999999999999999999999998765310 0 011356
Q ss_pred HHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEE-EcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCC
Q 021361 189 IIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILI-NIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPE 263 (313)
Q Consensus 189 l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~i-n~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~ 263 (313)
+.++++++|+|+=++--+-+.+.-+-++.=...|+.+++. |++. +....+..+++.... .++|--|.+-|.
T Consensus 90 v~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~~sr-f~GlHFfNPvPv 161 (298)
T KOG2304|consen 90 VSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQRPSR-FAGLHFFNPVPV 161 (298)
T ss_pred HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccChhh-hceeeccCCchh
Confidence 7778888888876665444444333333334467777654 4433 556777777776654 378888887773
No 220
>PTZ00117 malate dehydrogenase; Provisional
Probab=97.28 E-value=0.0013 Score=61.73 Aligned_cols=114 Identities=14% Similarity=0.211 Sum_probs=70.4
Q ss_pred cCCCEEEEEcCChhHHHHHHHHHhcC-CcEEEECCCCccccc---------------cc--ccCCHHHHHhhCCeeEEec
Q 021361 142 FSGKSVGIVGLGRIGTAIAKRVEAFG-CPISYHSRSEKSDAN---------------YK--YYTNIIDLASNCQILIVAC 203 (313)
Q Consensus 142 l~g~~vgiiG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~---------------~~--~~~~l~~l~~~aDvv~l~~ 203 (313)
...++|+|||.|.+|..++..+...| .++..+|...+...+ .. ...+.+ .+++||+|+++.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 35679999999999999999998888 689999987643111 01 124555 779999999998
Q ss_pred --CCChH-hh--------hccC--HHHHhhcCCCcEEEEcCCCCccCHHHHHHHHH--hCCceEEE--cc
Q 021361 204 --SLTEE-TH--------HIVN--RKVIDALGPSGILINIGRGAHIDEPELVSALL--EGRLAGAG--LD 256 (313)
Q Consensus 204 --p~~~~-t~--------~~i~--~~~l~~mk~ga~~in~~rg~~vd~~al~~al~--~g~~~ga~--lD 256 (313)
|..+. ++ .++. .+.++...|.+++|+++-..=+-...+.+.-. ..++.|.+ +|
T Consensus 82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld 151 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD 151 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence 44331 11 1111 12344456888899985433233333333321 34566555 55
No 221
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.26 E-value=0.002 Score=51.85 Aligned_cols=97 Identities=20% Similarity=0.200 Sum_probs=57.8
Q ss_pred EEEEEcC-ChhHHHHHHHHHh-cCCcE-EEECCCCcc-------------cccccccCCHHHHHhhCCeeEEecCCChHh
Q 021361 146 SVGIVGL-GRIGTAIAKRVEA-FGCPI-SYHSRSEKS-------------DANYKYYTNIIDLASNCQILIVACSLTEET 209 (313)
Q Consensus 146 ~vgiiG~-G~iG~~~a~~l~~-~g~~V-~~~~~~~~~-------------~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t 209 (313)
+|+|+|+ |+||+.+++.+.. -|+++ .++++..+. ..+.....++++++.++|+++-.. +++.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT--~p~~ 79 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT--NPDA 79 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES---HHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC--ChHH
Confidence 7999999 9999999999987 78885 567777621 122344578999999999988776 4443
Q ss_pred hhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361 210 HHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLE 247 (313)
Q Consensus 210 ~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~ 247 (313)
-.-.-+.. ++.|.-+|-...|---.+.+.++.+.+
T Consensus 80 ~~~~~~~~---~~~g~~~ViGTTG~~~~~~~~l~~~a~ 114 (124)
T PF01113_consen 80 VYDNLEYA---LKHGVPLVIGTTGFSDEQIDELEELAK 114 (124)
T ss_dssp HHHHHHHH---HHHT-EEEEE-SSSHHHHHHHHHHHTT
T ss_pred hHHHHHHH---HhCCCCEEEECCCCCHHHHHHHHHHhc
Confidence 32222222 233555555445553333344444433
No 222
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.26 E-value=0.00067 Score=63.95 Aligned_cols=82 Identities=10% Similarity=0.185 Sum_probs=61.2
Q ss_pred CCEEEEEcCChhHHHHHHHHHh-cCC-cEEEECCCCcccc----------cc--cccCCHHHHHhhCCeeEEecCCChHh
Q 021361 144 GKSVGIVGLGRIGTAIAKRVEA-FGC-PISYHSRSEKSDA----------NY--KYYTNIIDLASNCQILIVACSLTEET 209 (313)
Q Consensus 144 g~~vgiiG~G~iG~~~a~~l~~-~g~-~V~~~~~~~~~~~----------~~--~~~~~l~~l~~~aDvv~l~~p~~~~t 209 (313)
.++++|||.|.+|+..+..+.. .+. +|.+|+|+.++.. +. ..+.++++++++||+|++++|..
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~--- 208 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE--- 208 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC---
Confidence 5799999999999998888874 564 6999999865321 12 22468899999999999998864
Q ss_pred hhccCHHHHhhcCCCcEEEEcC
Q 021361 210 HHIVNRKVIDALGPSGILINIG 231 (313)
Q Consensus 210 ~~~i~~~~l~~mk~ga~~in~~ 231 (313)
..++..+. +++|+.+..++
T Consensus 209 ~p~i~~~~---l~~g~~v~~vg 227 (330)
T PRK08291 209 EPILKAEW---LHPGLHVTAMG 227 (330)
T ss_pred CcEecHHH---cCCCceEEeeC
Confidence 35666543 57887776654
No 223
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.26 E-value=0.00096 Score=62.21 Aligned_cols=111 Identities=19% Similarity=0.248 Sum_probs=70.0
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccccc-----------------ccccCCHHHHHhhCCeeEEecCCC
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDAN-----------------YKYYTNIIDLASNCQILIVACSLT 206 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~-----------------~~~~~~l~~l~~~aDvv~l~~p~~ 206 (313)
++|+|||.|.||..+|..+...|. +|..+|...+...+ .....+.++ +++||+|+++++..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 489999999999999999988776 89999985432110 112356766 78999999998832
Q ss_pred hH-----------hhhccC--HHHHhhcCCCcEEEEcCCCCccCHHHHHHH--HHhCCceEEE--cc
Q 021361 207 EE-----------THHIVN--RKVIDALGPSGILINIGRGAHIDEPELVSA--LLEGRLAGAG--LD 256 (313)
Q Consensus 207 ~~-----------t~~~i~--~~~l~~mk~ga~~in~~rg~~vd~~al~~a--l~~g~~~ga~--lD 256 (313)
.. +..++. .+.+....+++++|+++-.-=+-...+.+. +...++.|.+ ||
T Consensus 81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305)
T TIGR01763 81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence 21 111221 122333457889999865433333444444 4445566654 56
No 224
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.25 E-value=0.00066 Score=62.70 Aligned_cols=36 Identities=42% Similarity=0.620 Sum_probs=34.3
Q ss_pred CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361 143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK 178 (313)
Q Consensus 143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~ 178 (313)
.|+.+||+|+|.+|+.-.+..+++|++|+++|++.+
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~ 216 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSK 216 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCch
Confidence 799999999999999999999999999999999864
No 225
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.23 E-value=0.0014 Score=61.38 Aligned_cols=102 Identities=12% Similarity=0.124 Sum_probs=65.3
Q ss_pred CEEEEEcCChhHHHHHHHHHhc-CCcEE-EECCCC-ccc---ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHH
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAF-GCPIS-YHSRSE-KSD---ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVI 218 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~-g~~V~-~~~~~~-~~~---~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l 218 (313)
.+|||||+|+||+..++.+... ++++. +++++. ... .+.....+.++++.+.|+|++|+|...+. ....
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th~-----~~~~ 78 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSATDI-----PEQA 78 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCccCH-----HHHH
Confidence 5899999999999999999765 78876 478875 221 12222346777788999999999864332 2233
Q ss_pred hhcCCCcEEEEcCCC--CccC-HHHHHHHHHh-CCce
Q 021361 219 DALGPSGILINIGRG--AHID-EPELVSALLE-GRLA 251 (313)
Q Consensus 219 ~~mk~ga~~in~~rg--~~vd-~~al~~al~~-g~~~ 251 (313)
..|+.|.=+|+..-- .+-+ .+.+.++.++ |+..
T Consensus 79 ~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vs 115 (324)
T TIGR01921 79 PYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVS 115 (324)
T ss_pred HHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 446667667776421 1123 3334444453 5654
No 226
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.21 E-value=0.00072 Score=59.28 Aligned_cols=41 Identities=29% Similarity=0.270 Sum_probs=36.9
Q ss_pred ccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCC
Q 021361 137 ELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE 177 (313)
Q Consensus 137 ~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~ 177 (313)
|..-.|.||+|.|||.|.+|...++.|...|++|+++++..
T Consensus 3 Pl~l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 3 PLMIDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred ceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 44567999999999999999999999999999999998754
No 227
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.20 E-value=0.0016 Score=59.53 Aligned_cols=102 Identities=19% Similarity=0.203 Sum_probs=62.8
Q ss_pred CEEEEEcCChhHHHHHHHHHhc-CCcEE-EECCCCccc-------ccccccCCHHHHHhhCCeeEEecCCChHhhhccCH
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAF-GCPIS-YHSRSEKSD-------ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNR 215 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~-g~~V~-~~~~~~~~~-------~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~ 215 (313)
.+|||||+|.||+.+++.+... ++++. ++++..... .+...+.+++++-.+.|+|+.|.|.....+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~~e----- 76 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAALKE----- 76 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHHHH-----
Confidence 3799999999999999999865 56653 343322111 123446788888456999999998543311
Q ss_pred HHHhhcCCCcEEEEcCCCCccCH---HHHHHHHHhCCce
Q 021361 216 KVIDALGPSGILINIGRGAHIDE---PELVSALLEGRLA 251 (313)
Q Consensus 216 ~~l~~mk~ga~~in~~rg~~vd~---~al~~al~~g~~~ 251 (313)
-....++.|.-++-.+-|.+.|. +.|.++.++++..
T Consensus 77 ~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~ 115 (265)
T PRK13303 77 HVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR 115 (265)
T ss_pred HHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence 12233455555555555655554 4466666665543
No 228
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.19 E-value=0.0011 Score=52.48 Aligned_cols=100 Identities=20% Similarity=0.287 Sum_probs=64.3
Q ss_pred EEEEEcCChhHHHHHHHHHhc--CCcE-EEECCCCccc------ccccccCCHHHHHh--hCCeeEEecCCChHhhhccC
Q 021361 146 SVGIVGLGRIGTAIAKRVEAF--GCPI-SYHSRSEKSD------ANYKYYTNIIDLAS--NCQILIVACSLTEETHHIVN 214 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~--g~~V-~~~~~~~~~~------~~~~~~~~l~~l~~--~aDvv~l~~p~~~~t~~~i~ 214 (313)
++||||+|.+|+...+.+... ++++ .++|++++.. .+...+.+++++++ +.|+|++++|...+.. +-
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~--~~ 79 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAE--IA 79 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHH--HH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHH--HH
Confidence 799999999999999888766 4565 4688876432 23446789999998 7999999998744433 22
Q ss_pred HHHHhhcCCC-cEEEEc-CCCCccCHHHHHHHHHhCCc
Q 021361 215 RKVIDALGPS-GILINI-GRGAHIDEPELVSALLEGRL 250 (313)
Q Consensus 215 ~~~l~~mk~g-a~~in~-~rg~~vd~~al~~al~~g~~ 250 (313)
... ++.| .+++.- ---.+-+.+.|.++.++.+.
T Consensus 80 ~~~---l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~ 114 (120)
T PF01408_consen 80 KKA---LEAGKHVLVEKPLALTLEEAEELVEAAKEKGV 114 (120)
T ss_dssp HHH---HHTTSEEEEESSSSSSHHHHHHHHHHHHHHTS
T ss_pred HHH---HHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCC
Confidence 222 3333 344441 11233445556666555443
No 229
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.19 E-value=0.0017 Score=60.46 Aligned_cols=85 Identities=16% Similarity=0.125 Sum_probs=64.4
Q ss_pred CCEEEEEcCChhHHHHHHHHHh-cCC-cEEEECCCCcccc----------c--ccccCCHHHHHhhCCeeEEecCCChHh
Q 021361 144 GKSVGIVGLGRIGTAIAKRVEA-FGC-PISYHSRSEKSDA----------N--YKYYTNIIDLASNCQILIVACSLTEET 209 (313)
Q Consensus 144 g~~vgiiG~G~iG~~~a~~l~~-~g~-~V~~~~~~~~~~~----------~--~~~~~~l~~l~~~aDvv~l~~p~~~~t 209 (313)
-+++||||.|..|+.-++.+.. +.. +|.+|+|+.++.. + ...+.+.++++.+||+|+.++|.+
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~--- 193 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSD--- 193 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC---
Confidence 4699999999999988887764 444 5999999976421 1 223578999999999999988743
Q ss_pred hhccCHHHHhhcCCCcEEEEcCCCC
Q 021361 210 HHIVNRKVIDALGPSGILINIGRGA 234 (313)
Q Consensus 210 ~~~i~~~~l~~mk~ga~~in~~rg~ 234 (313)
..++..+. +|||+.+.-+|...
T Consensus 194 ~P~~~~~~---l~pg~hV~aiGs~~ 215 (301)
T PRK06407 194 TPIFNRKY---LGDEYHVNLAGSNY 215 (301)
T ss_pred CcEecHHH---cCCCceEEecCCCC
Confidence 56777654 57898887777543
No 230
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.17 E-value=0.001 Score=53.15 Aligned_cols=84 Identities=15% Similarity=0.192 Sum_probs=53.2
Q ss_pred EEEEEc-CChhHHHHHHHHHhc-CCcEEEE-CCCCcccc-----c--cc-c-c--CCHHHH-HhhCCeeEEecCCChHhh
Q 021361 146 SVGIVG-LGRIGTAIAKRVEAF-GCPISYH-SRSEKSDA-----N--YK-Y-Y--TNIIDL-ASNCQILIVACSLTEETH 210 (313)
Q Consensus 146 ~vgiiG-~G~iG~~~a~~l~~~-g~~V~~~-~~~~~~~~-----~--~~-~-~--~~l~~l-~~~aDvv~l~~p~~~~t~ 210 (313)
++||+| .|.+|+.+++.+... ++++.++ ++...... . .. . . .+.+++ ..++|+|++|+|.....+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~ 80 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE 80 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence 589999 599999999999874 7887655 43321110 0 00 0 0 111122 258999999999764433
Q ss_pred hccCHHHHhhcCCCcEEEEcC
Q 021361 211 HIVNRKVIDALGPSGILINIG 231 (313)
Q Consensus 211 ~~i~~~~l~~mk~ga~~in~~ 231 (313)
.+. .....+++|.++|+++
T Consensus 81 -~~~-~~~~~~~~g~~viD~s 99 (122)
T smart00859 81 -IAP-LLPKAAEAGVKVIDLS 99 (122)
T ss_pred -HHH-HHHhhhcCCCEEEECC
Confidence 222 2345579999999997
No 231
>PRK14031 glutamate dehydrogenase; Provisional
Probab=97.14 E-value=0.0097 Score=58.05 Aligned_cols=106 Identities=14% Similarity=0.131 Sum_probs=69.6
Q ss_pred ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc---ccc--------------------------c-ccCC
Q 021361 139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD---ANY--------------------------K-YYTN 188 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~---~~~--------------------------~-~~~~ 188 (313)
|.+|.|++|.|.|+|++|...|+.|..+|++|++++.+.... .+. . ...+
T Consensus 223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~ 302 (444)
T PRK14031 223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVE 302 (444)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcC
Confidence 557999999999999999999999999999998754422110 000 0 0113
Q ss_pred HHHHH-hhCCeeEEecCCChHhhhccCHHHHhhcCC-Cc-EEEEcCCCCccCHHHHHHHHHhCCce
Q 021361 189 IIDLA-SNCQILIVACSLTEETHHIVNRKVIDALGP-SG-ILINIGRGAHIDEPELVSALLEGRLA 251 (313)
Q Consensus 189 l~~l~-~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~-ga-~~in~~rg~~vd~~al~~al~~g~~~ 251 (313)
.++++ ..||+++-|. +++.|+++..++++. |. +++--+.| ++..++. +.|.+..+.
T Consensus 303 ~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~-~~L~~rgI~ 361 (444)
T PRK14031 303 GARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANM-PSTPEAI-KVFQDAKIL 361 (444)
T ss_pred CcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHH-HHHHHCCcE
Confidence 33443 3588777543 477899998888865 44 44444455 6777765 445555554
No 232
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.13 E-value=0.0035 Score=58.19 Aligned_cols=104 Identities=11% Similarity=0.183 Sum_probs=74.0
Q ss_pred CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCC--CcccccccccCCHHHHHhhCCeeEEecCCChHhh---h------
Q 021361 143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS--EKSDANYKYYTNIIDLASNCQILIVACSLTEETH---H------ 211 (313)
Q Consensus 143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~--~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~---~------ 211 (313)
.|++++|||.-.=-..+++.|...|++|.++.-. .....++....+.+++++++|+|++-+|.+.+.. .
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~ 80 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEK 80 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccC
Confidence 3789999999999999999999999998765432 2234466666678899999999999887643321 1
Q ss_pred -ccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361 212 -IVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA 251 (313)
Q Consensus 212 -~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ 251 (313)
-++.+.+++|+++..++ +|.+.. . +-+.+.+.++.
T Consensus 81 ~~~~~~~l~~l~~~~~v~-~G~~~~---~-~~~~~~~~gi~ 116 (296)
T PRK08306 81 LVLTEELLELTPEHCTIF-SGIANP---Y-LKELAKETNRK 116 (296)
T ss_pred CcchHHHHHhcCCCCEEE-EecCCH---H-HHHHHHHCCCe
Confidence 13577899999998444 344332 2 33556677776
No 233
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.12 E-value=0.001 Score=60.63 Aligned_cols=109 Identities=17% Similarity=0.276 Sum_probs=71.5
Q ss_pred EEEEcC-ChhHHHHHHHHHhcC----CcEEEECCCCccccc----------------ccccCCHHHHHhhCCeeEEecCC
Q 021361 147 VGIVGL-GRIGTAIAKRVEAFG----CPISYHSRSEKSDAN----------------YKYYTNIIDLASNCQILIVACSL 205 (313)
Q Consensus 147 vgiiG~-G~iG~~~a~~l~~~g----~~V~~~~~~~~~~~~----------------~~~~~~l~~l~~~aDvv~l~~p~ 205 (313)
|+|||. |.+|..+|..|...| .+|..||...+...+ .....++.+.+++||+|+++.-.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 689999 999999999998777 689999987643211 11134567889999999996522
Q ss_pred Ch-----------HhhhccC--HHHHhhcCCCcEEEEcCCCCccCHHH--HHHH--HHhCCceEEE-ccC
Q 021361 206 TE-----------ETHHIVN--RKVIDALGPSGILINIGRGAHIDEPE--LVSA--LLEGRLAGAG-LDV 257 (313)
Q Consensus 206 ~~-----------~t~~~i~--~~~l~~mk~ga~~in~~rg~~vd~~a--l~~a--l~~g~~~ga~-lDV 257 (313)
.. .+..++. .+.++...|+++++|++ .++|.-. +.+. +...++.|.+ +|.
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t--NP~d~~t~~~~~~sg~~~~kviG~~~ld~ 148 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS--NPVDIITYLVWRYSGLPKEKVIGLGTLDP 148 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--CcHHHHHHHHHHHhCCCchhEEEeecchH
Confidence 10 0111111 12344456899999995 5555443 4344 3566788888 775
No 234
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.10 E-value=0.0023 Score=61.34 Aligned_cols=98 Identities=13% Similarity=0.190 Sum_probs=64.4
Q ss_pred CEEEEEcCChhHHHHHHHHHhcC-CcEEEECCCCccccc---------------ccccCCHHHHHhhCCeeEEecCCChH
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFG-CPISYHSRSEKSDAN---------------YKYYTNIIDLASNCQILIVACSLTEE 208 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~---------------~~~~~~l~~l~~~aDvv~l~~p~~~~ 208 (313)
++|.|||.|.+|+.+|..|.+.| .+|++.||+.++... +.-...+.+++++.|+|+.++|..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~-- 79 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPF-- 79 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCch--
Confidence 57999999999999999999888 899999999653211 111235777888888888888853
Q ss_pred hhhccCHHHH-hhcCCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 021361 209 THHIVNRKVI-DALGPSGILINIGRGAHIDEPELVSALLEGR 249 (313)
Q Consensus 209 t~~~i~~~~l-~~mk~ga~~in~~rg~~vd~~al~~al~~g~ 249 (313)
++...+ +.++.|.-.++++-.+.-- -++.+..++..
T Consensus 80 ----~~~~i~ka~i~~gv~yvDts~~~~~~-~~~~~~a~~Ag 116 (389)
T COG1748 80 ----VDLTILKACIKTGVDYVDTSYYEEPP-WKLDEEAKKAG 116 (389)
T ss_pred ----hhHHHHHHHHHhCCCEEEcccCCchh-hhhhHHHHHcC
Confidence 222333 3346666667766544332 33333333333
No 235
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.08 E-value=0.0018 Score=61.30 Aligned_cols=84 Identities=12% Similarity=0.190 Sum_probs=62.4
Q ss_pred CEEEEEcCChhHHHHHHHHH-hcCC-cEEEECCCCcccc---------c--ccccCCHHHHHhhCCeeEEecCCChHhhh
Q 021361 145 KSVGIVGLGRIGTAIAKRVE-AFGC-PISYHSRSEKSDA---------N--YKYYTNIIDLASNCQILIVACSLTEETHH 211 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~-~~g~-~V~~~~~~~~~~~---------~--~~~~~~l~~l~~~aDvv~l~~p~~~~t~~ 211 (313)
++++|||.|..++.-++.+. -+.. +|.+|+|+++... + ...+.+.++++++||+|+.++|.+ +...
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~-~~~P 208 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK-TNAT 208 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC-CCCc
Confidence 68999999999988887665 3444 5999999976421 1 223578999999999999999742 2235
Q ss_pred ccCHHHHhhcCCCcEEEEcCC
Q 021361 212 IVNRKVIDALGPSGILINIGR 232 (313)
Q Consensus 212 ~i~~~~l~~mk~ga~~in~~r 232 (313)
++..+ .+|||+.+.-+|.
T Consensus 209 vl~~~---~lkpG~hV~aIGs 226 (346)
T PRK07589 209 ILTDD---MVEPGMHINAVGG 226 (346)
T ss_pred eecHH---HcCCCcEEEecCC
Confidence 56664 4699998888774
No 236
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=97.04 E-value=0.0013 Score=61.86 Aligned_cols=58 Identities=24% Similarity=0.436 Sum_probs=47.1
Q ss_pred CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccccc----c---cc---CCHHHHHhhCCeeEE
Q 021361 144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANY----K---YY---TNIIDLASNCQILIV 201 (313)
Q Consensus 144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~----~---~~---~~l~~l~~~aDvv~l 201 (313)
+++|||||.|-.|++|+...+.+|+++.+.|+.++....- . .+ ..+.++.++||+|..
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 4799999999999999999999999999999988754220 0 11 257788999999875
No 237
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.03 E-value=0.0047 Score=57.11 Aligned_cols=37 Identities=24% Similarity=0.393 Sum_probs=33.9
Q ss_pred ccCCCEEEEEcCChhHHHHHHHHHhcCCc-EEEECCCC
Q 021361 141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRSE 177 (313)
Q Consensus 141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~~ 177 (313)
.+.||++.|+|.|.+|++++..|...|++ |.+++|+.
T Consensus 123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 36789999999999999999999999997 99999975
No 238
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.03 E-value=0.0034 Score=61.25 Aligned_cols=106 Identities=16% Similarity=0.231 Sum_probs=70.9
Q ss_pred ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEE-CCCCcc--cc-------------------ccc-----ccCCHHH
Q 021361 139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYH-SRSEKS--DA-------------------NYK-----YYTNIID 191 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~-~~~~~~--~~-------------------~~~-----~~~~l~~ 191 (313)
+.++.|++|.|.|+|++|+.+|+.|..+|++|+++ |.+..- .. ++. ...+.++
T Consensus 227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~ 306 (445)
T PRK09414 227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS 306 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence 45689999999999999999999999999999877 522100 00 000 0113344
Q ss_pred HHh-hCCeeEEecCCChHhhhccCHHHHhhcC--CCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361 192 LAS-NCQILIVACSLTEETHHIVNRKVIDALG--PSGILINIGRGAHIDEPELVSALLEGRLA 251 (313)
Q Consensus 192 l~~-~aDvv~l~~p~~~~t~~~i~~~~l~~mk--~ga~~in~~rg~~vd~~al~~al~~g~~~ 251 (313)
++. +||+++-|.. .+.|+.+....++ .-.+++-.+-+++ ..+ -.+.|.++.+.
T Consensus 307 i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~-t~~-A~~~L~~rGI~ 362 (445)
T PRK09414 307 PWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS-TPE-AIEVFLEAGVL 362 (445)
T ss_pred ccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC-CHH-HHHHHHHCCcE
Confidence 443 6998887663 5678888777773 2346666677776 444 45777777776
No 239
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=97.03 E-value=0.0019 Score=62.98 Aligned_cols=120 Identities=18% Similarity=0.290 Sum_probs=78.8
Q ss_pred cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc---------ccccc--cCCHHHHHhhCCeeEEecCCChHhh
Q 021361 142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD---------ANYKY--YTNIIDLASNCQILIVACSLTEETH 210 (313)
Q Consensus 142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~---------~~~~~--~~~l~~l~~~aDvv~l~~p~~~~t~ 210 (313)
+.+++|.|+|+|.-|.++|+.|...|++|+++|.++... .+... -....+.+.++|+|+.+ |.-+-+.
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~S-PGi~~~~ 83 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKS-PGIPPTH 83 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEEC-CCCCCCC
Confidence 459999999999999999999999999999999766541 11111 11222677889999885 3222222
Q ss_pred h-----------ccCH-HHHhhc-CCC-cEEEEcCCCCccCHHHHHHHHHh--------CCceEEEccCCCCCC
Q 021361 211 H-----------IVNR-KVIDAL-GPS-GILINIGRGAHIDEPELVSALLE--------GRLAGAGLDVYENEP 262 (313)
Q Consensus 211 ~-----------~i~~-~~l~~m-k~g-a~~in~~rg~~vd~~al~~al~~--------g~~~ga~lDV~~~EP 262 (313)
. ++++ +.+-+. ++. .+-|--+-|+.-...-+...|++ |+|...++|+.++++
T Consensus 84 p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~~ 157 (448)
T COG0771 84 PLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQAE 157 (448)
T ss_pred HHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhcccC
Confidence 1 2222 233332 122 44455556887777777777766 667788899988744
No 240
>PRK06444 prephenate dehydrogenase; Provisional
Probab=97.02 E-value=0.0009 Score=58.39 Aligned_cols=60 Identities=12% Similarity=0.261 Sum_probs=46.5
Q ss_pred EEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCC
Q 021361 146 SVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPS 224 (313)
Q Consensus 146 ~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~g 224 (313)
+++|||. |.||+.++..++..|+.|+ +++||+|++|+|.. .+..++ +.+.
T Consensus 2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~---------------------~~~~DlVilavPv~-~~~~~i-----~~~~-- 52 (197)
T PRK06444 2 MEIIIGKNGRLGRVLCSILDDNGLGVY---------------------IKKADHAFLSVPID-AALNYI-----ESYD-- 52 (197)
T ss_pred EEEEEecCCcHHHHHHHHHHhCCCEEE---------------------ECCCCEEEEeCCHH-HHHHHH-----HHhC--
Confidence 7999999 9999999999999999885 36899999999964 333333 2232
Q ss_pred cEEEEcCCCC
Q 021361 225 GILINIGRGA 234 (313)
Q Consensus 225 a~~in~~rg~ 234 (313)
.+++|++.-+
T Consensus 53 ~~v~Dv~SvK 62 (197)
T PRK06444 53 NNFVEISSVK 62 (197)
T ss_pred CeEEeccccC
Confidence 3788998654
No 241
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.96 E-value=0.025 Score=49.69 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=37.3
Q ss_pred ccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361 137 ELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK 178 (313)
Q Consensus 137 ~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~ 178 (313)
|..-.|+|++|.|||.|.+|..-++.|..+|++|+++++...
T Consensus 2 P~~l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 2 PVFANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred CeEEEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 344578999999999999999999999999999999998654
No 242
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=96.94 E-value=0.014 Score=55.88 Aligned_cols=146 Identities=18% Similarity=0.322 Sum_probs=90.6
Q ss_pred ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc---cc---------------------cccccCCHHHHHh
Q 021361 139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS---DA---------------------NYKYYTNIIDLAS 194 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~---~~---------------------~~~~~~~l~~l~~ 194 (313)
+..|+|++|.|=|+|++|+-+|+.|...|.+|++++.+... +. +.+. .+-++++.
T Consensus 202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~-i~~~e~~~ 280 (411)
T COG0334 202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEY-ITNEELLE 280 (411)
T ss_pred CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceE-cccccccc
Confidence 44589999999999999999999999999999888766541 00 1111 22355544
Q ss_pred -hCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCc
Q 021361 195 -NCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNN 273 (313)
Q Consensus 195 -~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pn 273 (313)
.||+++=| .+.+.|+.+..++++-. +++-.+-|++- .+|--..+ +..|. ++=| -+.+.-.
T Consensus 281 ~~cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t-~eA~~i~~-erGIl-~~PD----------~laNAGG 341 (411)
T COG0334 281 VDCDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTT-PEADEILL-ERGIL-VVPD----------ILANAGG 341 (411)
T ss_pred ccCcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCC-HHHHHHHH-HCCCE-EcCh----------hhccCcC
Confidence 68876633 46778999999988765 77777777765 44444434 44454 2322 2333333
Q ss_pred EEEcC--C------CCCCcHHHHHHHHHHHHHHHHHHHc
Q 021361 274 VVLLP--H------VGSDTEETSKAMADLVIENLVAHFS 304 (313)
Q Consensus 274 vi~TP--H------ia~~t~~~~~~~~~~~~~ni~~~~~ 304 (313)
|+.+= . ..+..++..+++..++.+..+.+..
T Consensus 342 V~vS~~E~~qn~~~~~wt~eev~~kl~~im~~~~~~~~~ 380 (411)
T COG0334 342 VIVSYLEWVQNAQGLYWTEEEVDEKLERIMVNAFEAVYQ 380 (411)
T ss_pred eeeehHHHHhhcccCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 33332 1 1133444556666666666665543
No 243
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.89 E-value=0.0027 Score=55.64 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=33.9
Q ss_pred cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCC
Q 021361 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRS 176 (313)
Q Consensus 140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~ 176 (313)
..|++++|.|+|+|.+|..+|+.|...|. ++..+|+.
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 46899999999999999999999999998 68888875
No 244
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=96.88 E-value=0.0082 Score=55.97 Aligned_cols=89 Identities=13% Similarity=0.260 Sum_probs=64.4
Q ss_pred cCCCEEEEEcC---ChhHHHHHHHHHhcCCcEEEECCCCccccc---ccccCCHHHHHhhCCeeEEecCCC---------
Q 021361 142 FSGKSVGIVGL---GRIGTAIAKRVEAFGCPISYHSRSEKSDAN---YKYYTNIIDLASNCQILIVACSLT--------- 206 (313)
Q Consensus 142 l~g~~vgiiG~---G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~---~~~~~~l~~l~~~aDvv~l~~p~~--------- 206 (313)
+.|++|+++|= +++.++++..+..+|+++.+..|..-.... .....++++.++++|+|..-. ..
T Consensus 154 l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~d~~ea~~~aDvvyt~~-~q~e~~~~~~~ 232 (305)
T PRK00856 154 LEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMPEYGVHTDLDEVIEDADVVMMLR-VQKERMDGGLL 232 (305)
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccccceEEECCHHHHhCCCCEEEECC-cccccccccch
Confidence 78999999998 589999999999999999988876532211 244679999999999887743 11
Q ss_pred hHh-----hhccCHHHHhhcCCCcEEEEcC
Q 021361 207 EET-----HHIVNRKVIDALGPSGILINIG 231 (313)
Q Consensus 207 ~~t-----~~~i~~~~l~~mk~ga~~in~~ 231 (313)
++. ...++++.++.+|++++|.-+.
T Consensus 233 ~~~~~~~~~y~v~~~ll~~a~~~~~~mHcL 262 (305)
T PRK00856 233 PSYEEYKRSYGLTAERLALAKPDAIVMHPG 262 (305)
T ss_pred HHHHHHhccCccCHHHHhhcCCCCEEECCC
Confidence 011 2245666677777777776654
No 245
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.88 E-value=0.0012 Score=60.91 Aligned_cols=64 Identities=13% Similarity=0.219 Sum_probs=46.3
Q ss_pred cCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcccccc----------cccC---CHHHHHhhCCeeEEecCC
Q 021361 142 FSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDANY----------KYYT---NIIDLASNCQILIVACSL 205 (313)
Q Consensus 142 l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~----------~~~~---~l~~l~~~aDvv~l~~p~ 205 (313)
++|+++.|||.|.+|++++..|...|+ +|++++|+.++.... .... ++.+.+.++|+|+.++|.
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~ 200 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPA 200 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCC
Confidence 678999999999999999999999998 599999986532110 0011 122445667777777775
No 246
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.87 E-value=0.0066 Score=56.17 Aligned_cols=38 Identities=26% Similarity=0.412 Sum_probs=33.7
Q ss_pred ccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCc
Q 021361 141 KFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEK 178 (313)
Q Consensus 141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~ 178 (313)
.++||++.|+|.|..+++++-.|...|. +|++++|+.+
T Consensus 121 ~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~ 159 (288)
T PRK12749 121 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 159 (288)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence 4678999999999999999999988897 6999999853
No 247
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.86 E-value=0.002 Score=54.23 Aligned_cols=42 Identities=24% Similarity=0.253 Sum_probs=37.3
Q ss_pred cccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCC
Q 021361 136 FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE 177 (313)
Q Consensus 136 ~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~ 177 (313)
+|..-.|+|++|.|||.|.+|...++.|...|++|.++++..
T Consensus 5 ~P~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~ 46 (157)
T PRK06719 5 YPLMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEI 46 (157)
T ss_pred cceEEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCcc
Confidence 455678999999999999999999999999999999987543
No 248
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.84 E-value=0.0045 Score=57.68 Aligned_cols=92 Identities=20% Similarity=0.305 Sum_probs=60.6
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCccccc-------------c--cccCCHHHHHhhCCeeEEecCCCh
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSDAN-------------Y--KYYTNIIDLASNCQILIVACSLTE 207 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~-------------~--~~~~~l~~l~~~aDvv~l~~p~~~ 207 (313)
++|+|||.|.+|+.+|..|...|. +|..+|+..+...+ . .......+.+++||+|+++.....
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~ 80 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQ 80 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCC
Confidence 489999999999999999998884 79999987654211 0 111122345789999999887531
Q ss_pred H---hh--------hccC--HHHHhhcCCCcEEEEcCCCCccCH
Q 021361 208 E---TH--------HIVN--RKVIDALGPSGILINIGRGAHIDE 238 (313)
Q Consensus 208 ~---t~--------~~i~--~~~l~~mk~ga~~in~~rg~~vd~ 238 (313)
. ++ .++. .+.+....|.+++++++ .++|.
T Consensus 81 ~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs--NP~d~ 122 (306)
T cd05291 81 KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS--NPVDV 122 (306)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec--ChHHH
Confidence 1 11 1111 12344567788999986 44443
No 249
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.83 E-value=0.0016 Score=52.16 Aligned_cols=83 Identities=16% Similarity=0.200 Sum_probs=51.0
Q ss_pred EEEEEc-CChhHHHHHHHHHh-cCCcE-EEECCCCcccc------c-------ccccCCHHHHHhhCCeeEEecCCChHh
Q 021361 146 SVGIVG-LGRIGTAIAKRVEA-FGCPI-SYHSRSEKSDA------N-------YKYYTNIIDLASNCQILIVACSLTEET 209 (313)
Q Consensus 146 ~vgiiG-~G~iG~~~a~~l~~-~g~~V-~~~~~~~~~~~------~-------~~~~~~l~~l~~~aDvv~l~~p~~~~t 209 (313)
+|+||| .|.+|+.+.++|.. ..+++ .+++++..... . ........+.+.++|+|++|+|.....
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~~ 80 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGASK 80 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHHH
Confidence 699999 99999999999986 34454 44555541110 0 011112234459999999999853222
Q ss_pred hhccCHHHHhhcCCCcEEEEcCCC
Q 021361 210 HHIVNRKVIDALGPSGILINIGRG 233 (313)
Q Consensus 210 ~~~i~~~~l~~mk~ga~~in~~rg 233 (313)
+ +.... +++|..+|+.+..
T Consensus 81 ~--~~~~~---~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 81 E--LAPKL---LKAGIKVIDLSGD 99 (121)
T ss_dssp H--HHHHH---HHTTSEEEESSST
T ss_pred H--HHHHH---hhCCcEEEeCCHH
Confidence 2 22222 5789999998743
No 250
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.82 E-value=0.024 Score=55.39 Aligned_cols=155 Identities=14% Similarity=0.113 Sum_probs=90.7
Q ss_pred ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEE--------ECCCCccc-c-----------------------ccccc
Q 021361 139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISY--------HSRSEKSD-A-----------------------NYKYY 186 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~--------~~~~~~~~-~-----------------------~~~~~ 186 (313)
|.+|.|++|.|=|+|++|..+|+.|...|++|++ ||+..-.. . +.+.
T Consensus 223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~- 301 (445)
T PRK14030 223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTF- 301 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEE-
Confidence 4578999999999999999999999999999988 55332110 0 1111
Q ss_pred CCHHHHH-hhCCeeEEecCCChHhhhccCHHHHhhcC-C-CcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCC
Q 021361 187 TNIIDLA-SNCQILIVACSLTEETHHIVNRKVIDALG-P-SGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPE 263 (313)
Q Consensus 187 ~~l~~l~-~~aDvv~l~~p~~~~t~~~i~~~~l~~mk-~-ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~ 263 (313)
.+.++++ ..||+++-|. +.+.|+.+..+.+. . -.+++-.+-+ ++..+|- +.|.+..+. ++=|+.-+-=-
T Consensus 302 i~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI~-~vPD~~aNAGG 373 (445)
T PRK14030 302 FAGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQL-FAPGKAVNAGG 373 (445)
T ss_pred cCCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCCE-EeCcceecCCC
Confidence 1233433 3588777544 57789988888873 2 3456666666 6666654 677777776 33333222110
Q ss_pred CCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 021361 264 VPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFS 304 (313)
Q Consensus 264 ~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~ 304 (313)
.--..+ ..+-=.-|.-|..++..+++.+.+.+-+++.+.
T Consensus 374 Vivs~~--E~~qn~~~~~w~~eeV~~~L~~~m~~~~~~v~~ 412 (445)
T PRK14030 374 VATSGL--EMSQNAMHLSWSAEEVDEKLHQIMSGIHEQCVK 412 (445)
T ss_pred eeeehh--hhhccccccCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 111112345555556556666666665555543
No 251
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.77 E-value=0.0048 Score=57.94 Aligned_cols=112 Identities=15% Similarity=0.199 Sum_probs=68.4
Q ss_pred cCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcccc-------------c----ccccCCHHHHHhhCCeeEEec
Q 021361 142 FSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDA-------------N----YKYYTNIIDLASNCQILIVAC 203 (313)
Q Consensus 142 l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~-------------~----~~~~~~l~~l~~~aDvv~l~~ 203 (313)
++.++|+|||.|.+|..+|..+...|. +|..+|.+++... + .....+. +.+++||+|+++.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 455799999999999999999988885 8999998775321 0 1112455 4679999999976
Q ss_pred CCCh----------------HhhhccC--HHHHhhcCCCcEEEEcCCCCccCHHHHHHHHH--hCCceEEE
Q 021361 204 SLTE----------------ETHHIVN--RKVIDALGPSGILINIGRGAHIDEPELVSALL--EGRLAGAG 254 (313)
Q Consensus 204 p~~~----------------~t~~~i~--~~~l~~mk~ga~~in~~rg~~vd~~al~~al~--~g~~~ga~ 254 (313)
-... .+..++. .+.+....|.+++++++-..=+-...+.+.-. ..++.|.+
T Consensus 83 g~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 83 GLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 3211 1111111 12334455778999987333222333433321 24566665
No 252
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.76 E-value=0.0055 Score=56.96 Aligned_cols=59 Identities=14% Similarity=0.259 Sum_probs=43.8
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccccc---------------cc--ccCCHHHHHhhCCeeEEecC
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDAN---------------YK--YYTNIIDLASNCQILIVACS 204 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~---------------~~--~~~~l~~l~~~aDvv~l~~p 204 (313)
++|+|||.|.+|..+|..+...|. +|..+|+..+...+ .. ...+. +.+++||+|+++..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~ 79 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAG 79 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCC
Confidence 589999999999999999987765 89999986643211 01 12345 45789999999863
No 253
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.73 E-value=0.0027 Score=61.67 Aligned_cols=105 Identities=16% Similarity=0.183 Sum_probs=67.3
Q ss_pred CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccccc-----cccCCHHHHHhhCCeeEEecCCChHhh--------
Q 021361 144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANY-----KYYTNIIDLASNCQILIVACSLTEETH-------- 210 (313)
Q Consensus 144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~-----~~~~~l~~l~~~aDvv~l~~p~~~~t~-------- 210 (313)
.++|.|||+|.+|.++|+.|+..|++|.++|+........ ......+.+..++|+|+.+.+..+...
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~ 82 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIAS 82 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHC
Confidence 4689999999999999999999999999999865422110 111234445578998888775543221
Q ss_pred --hccCHHHH--hh--cCC-CcEEEEcCCCCccCHHHHHHHHHhC
Q 021361 211 --HIVNRKVI--DA--LGP-SGILINIGRGAHIDEPELVSALLEG 248 (313)
Q Consensus 211 --~~i~~~~l--~~--mk~-ga~~in~~rg~~vd~~al~~al~~g 248 (313)
.++.+..+ .. +.+ -.+-|--+-|+.-..+-+...|+..
T Consensus 83 g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~ 127 (418)
T PRK00683 83 HIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRL 127 (418)
T ss_pred CCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHc
Confidence 12222221 21 212 2455555578877777788888653
No 254
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.73 E-value=0.0057 Score=57.28 Aligned_cols=89 Identities=17% Similarity=0.257 Sum_probs=58.2
Q ss_pred CCCEEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCccccc--------------ccccCCHHHHHhhCCeeEEecCCC
Q 021361 143 SGKSVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSDAN--------------YKYYTNIIDLASNCQILIVACSLT 206 (313)
Q Consensus 143 ~g~~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~--------------~~~~~~l~~l~~~aDvv~l~~p~~ 206 (313)
++++|+|||.|.+|..+|-.|...|. ++..+|+..+...+ .....+..+.+++||+|+++.-..
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~~ 84 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGAP 84 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCCC
Confidence 57899999999999999999998887 79999986653211 011122335689999999976542
Q ss_pred hH---hh--------hccC--HHHHhhcCCCcEEEEcC
Q 021361 207 EE---TH--------HIVN--RKVIDALGPSGILINIG 231 (313)
Q Consensus 207 ~~---t~--------~~i~--~~~l~~mk~ga~~in~~ 231 (313)
.. ++ .++. .+.+....+++++++++
T Consensus 85 ~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 85 QKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 21 11 1111 12223334688999986
No 255
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.72 E-value=0.0043 Score=58.67 Aligned_cols=38 Identities=32% Similarity=0.388 Sum_probs=34.1
Q ss_pred cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCC
Q 021361 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSE 177 (313)
Q Consensus 140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~ 177 (313)
..|++++|.|||+|.+|..+|+.|...|. ++..+|+..
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 57999999999999999999999999998 688888753
No 256
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=96.71 E-value=0.0047 Score=55.74 Aligned_cols=105 Identities=18% Similarity=0.274 Sum_probs=70.0
Q ss_pred ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEE--------CCCCccc---------ccc--ccc----------CCHH-
Q 021361 141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYH--------SRSEKSD---------ANY--KYY----------TNII- 190 (313)
Q Consensus 141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~--------~~~~~~~---------~~~--~~~----------~~l~- 190 (313)
.++|+++.|-|+|++|+.+|+.|...|++|.+. |+..-.. .+. ..+ .+-+
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 108 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD 108 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc
Confidence 589999999999999999999999999998765 3221100 001 101 1222
Q ss_pred HHH-hhCCeeEEecCCChHhhhccCHHHHh-hcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361 191 DLA-SNCQILIVACSLTEETHHIVNRKVID-ALGPSGILINIGRGAHIDEPELVSALLEGRLA 251 (313)
Q Consensus 191 ~l~-~~aDvv~l~~p~~~~t~~~i~~~~l~-~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ 251 (313)
+++ ..||+++-|. ..+.|+.+... .+++++-+|--+--..+..++.. .|.+..+.
T Consensus 109 ~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~-~L~~rGI~ 165 (244)
T PF00208_consen 109 EILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADE-ILRERGIL 165 (244)
T ss_dssp HGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHH-HHHHTT-E
T ss_pred ccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHH-HHHHCCCE
Confidence 555 4899999874 25678888888 78777755554444445566665 88888876
No 257
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.70 E-value=0.014 Score=56.92 Aligned_cols=106 Identities=14% Similarity=0.159 Sum_probs=68.5
Q ss_pred ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEE-EECCCCc----------cc--------------c-------ccccc
Q 021361 139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPIS-YHSRSEK----------SD--------------A-------NYKYY 186 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~-~~~~~~~----------~~--------------~-------~~~~~ 186 (313)
+.+|.|++|.|=|+|++|+..|+.|..+|++|+ +.|.+.. .. . +.+.
T Consensus 232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~- 310 (454)
T PTZ00079 232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKY- 310 (454)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEE-
Confidence 457899999999999999999999999999988 4444310 00 0 0011
Q ss_pred CCHHHHH-hhCCeeEEecCCChHhhhccCHHHHhhc-CCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361 187 TNIIDLA-SNCQILIVACSLTEETHHIVNRKVIDAL-GPSGILINIGRGAHIDEPELVSALLEGRLA 251 (313)
Q Consensus 187 ~~l~~l~-~~aDvv~l~~p~~~~t~~~i~~~~l~~m-k~ga~~in~~rg~~vd~~al~~al~~g~~~ 251 (313)
.+.++++ ..||+.+-|. +.+.|+.+..+.+ +.++.+|-=+--..+..+ -.+.|.+..+.
T Consensus 311 ~~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~e-A~~~L~~~GI~ 371 (454)
T PTZ00079 311 VPGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPTTIE-ATHLFKKNGVI 371 (454)
T ss_pred eCCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCCCHH-HHHHHHHCCcE
Confidence 1222322 3688777554 5778888887766 556655554444444554 44667777766
No 258
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.68 E-value=0.017 Score=54.03 Aligned_cols=90 Identities=10% Similarity=0.092 Sum_probs=69.4
Q ss_pred hHHHHHHHHHhcCCcEEEECCCCccc-----------------------cc-------------ccccCC--HHHHHhhC
Q 021361 155 IGTAIAKRVEAFGCPISYHSRSEKSD-----------------------AN-------------YKYYTN--IIDLASNC 196 (313)
Q Consensus 155 iG~~~a~~l~~~g~~V~~~~~~~~~~-----------------------~~-------------~~~~~~--l~~l~~~a 196 (313)
||..+|..+...|++|..||++++.. .+ .....+ ..+.+++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 68999999999999999999987310 00 001122 55788999
Q ss_pred CeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHH
Q 021361 197 QILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALL 246 (313)
Q Consensus 197 Dvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~ 246 (313)
|+|+-++|-+.+.+.-+-++..+.++++++| ++.-+.+....|.+.++
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~ 128 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVA 128 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcC
Confidence 9999999999999988877788889999998 44555677778887764
No 259
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.66 E-value=0.0046 Score=55.10 Aligned_cols=148 Identities=13% Similarity=0.087 Sum_probs=85.0
Q ss_pred cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcc-------------ccc-----------------c--cc-
Q 021361 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKS-------------DAN-----------------Y--KY- 185 (313)
Q Consensus 140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~-------------~~~-----------------~--~~- 185 (313)
..|++++|.|+|+|.+|..+|+.|...|. ++..+|...-. ..+ . ..
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~ 96 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY 96 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 46899999999999999999999999998 57777653210 000 0 00
Q ss_pred -----cCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCC
Q 021361 186 -----YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYEN 260 (313)
Q Consensus 186 -----~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~ 260 (313)
..+++++++++|+|+.|+. +..++.++++...+ .+.-+|..+-.+ ..|... ++.+
T Consensus 97 ~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g~~g---------------~~g~v~-~~~p 156 (228)
T cd00757 97 NERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGAVLG---------------FEGQVT-VFIP 156 (228)
T ss_pred cceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEEecc---------------CEEEEE-EECC
Confidence 1234567888998888765 56677777764443 245566654221 112111 1111
Q ss_pred C-CCCCcccCCC-CcE-EEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 021361 261 E-PEVPEQMLGL-NNV-VLLPHVGSDTEETSKAMADLVIENLVAHFSNKP 307 (313)
Q Consensus 261 E-P~~~~~l~~~-pnv-i~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~ 307 (313)
. ...-.-+... +.- .-++..++.......-...+++..+.+++.|.+
T Consensus 157 ~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~a~e~i~~l~g~~ 206 (228)
T cd00757 157 GEGPCYRCLFPEPPPPGVPSCAEAGVLGPLVGVIGSLQALEALKILLGIG 206 (228)
T ss_pred CCCCCccccCCCCCCCCCCccccCCcchhHHHHHHHHHHHHHHHHHhCCC
Confidence 1 0000001100 000 112233445545556678888888999998874
No 260
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=96.64 E-value=0.016 Score=56.90 Aligned_cols=107 Identities=21% Similarity=0.297 Sum_probs=78.0
Q ss_pred cCCCEEEEEcC----ChhHHHHHHHHHhcCC--cEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCH
Q 021361 142 FSGKSVGIVGL----GRIGTAIAKRVEAFGC--PISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNR 215 (313)
Q Consensus 142 l~g~~vgiiG~----G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~ 215 (313)
++-++|.|||. |.+|..+.+.++..|+ +|+.+++......+...+.+++++-...|++++++|. +.+...+.+
T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i~G~~~~~sl~~lp~~~Dlavi~vp~-~~~~~~l~e 83 (447)
T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEILGVKAYPSVLEIPDPVDLAVIVVPA-KYVPQVVEE 83 (447)
T ss_pred cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCccCCccccCCHHHCCCCCCEEEEecCH-HHHHHHHHH
Confidence 56789999999 8899999999999888 6888898877667777888999998889999999984 344444443
Q ss_pred HHHhhcCCCcE-EEEcCCCC-----ccCHHHHHHHHHhCCce
Q 021361 216 KVIDALGPSGI-LINIGRGA-----HIDEPELVSALLEGRLA 251 (313)
Q Consensus 216 ~~l~~mk~ga~-~in~~rg~-----~vd~~al~~al~~g~~~ 251 (313)
..+ ..-.++ ++.-+-++ ...++++.+..+++.+.
T Consensus 84 -~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~gir 123 (447)
T TIGR02717 84 -CGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMR 123 (447)
T ss_pred -HHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCE
Confidence 222 333444 44333333 23467888888887766
No 261
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.63 E-value=0.0023 Score=52.78 Aligned_cols=104 Identities=21% Similarity=0.304 Sum_probs=69.0
Q ss_pred EEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc----cccc--------------ccCCHHHHHhhCCeeEEecCCChH
Q 021361 147 VGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD----ANYK--------------YYTNIIDLASNCQILIVACSLTEE 208 (313)
Q Consensus 147 vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----~~~~--------------~~~~l~~l~~~aDvv~l~~p~~~~ 208 (313)
|+|+|.|.||.-+|-+|+..|.+|..+.|..... .+.. ......+....+|+|++++... +
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~-~ 79 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAY-Q 79 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGG-G
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEeccc-c
Confidence 6899999999999999999999999999877110 1100 0112235678899999999754 3
Q ss_pred hhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEE
Q 021361 209 THHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGA 253 (313)
Q Consensus 209 t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga 253 (313)
+...+.. ....+++++.++-.--| +-.++.+.+.+...++.++
T Consensus 80 ~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g 122 (151)
T PF02558_consen 80 LEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGG 122 (151)
T ss_dssp HHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEE
T ss_pred hHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEE
Confidence 4444443 55666777777766554 5556667666655566543
No 262
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.63 E-value=0.0093 Score=54.21 Aligned_cols=61 Identities=18% Similarity=0.244 Sum_probs=45.9
Q ss_pred CEEEEEcC-ChhHHHHHHHHHhc-CCcEE-EECCCCccc-----ccccccCCHHHHHhhCCeeEEecCC
Q 021361 145 KSVGIVGL-GRIGTAIAKRVEAF-GCPIS-YHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSL 205 (313)
Q Consensus 145 ~~vgiiG~-G~iG~~~a~~l~~~-g~~V~-~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~ 205 (313)
.+|+|+|+ |.||+.+++.+... ++++. ++|+..+.. .+...+.+++++++.+|+|+.++|.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p 70 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTP 70 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCH
Confidence 37999998 99999999998864 68865 577765432 1233457899999899999977753
No 263
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=96.61 E-value=0.005 Score=48.12 Aligned_cols=76 Identities=7% Similarity=0.120 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHhcCCcEEEECCCCcccc--------cccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCc
Q 021361 154 RIGTAIAKRVEAFGCPISYHSRSEKSDA--------NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSG 225 (313)
Q Consensus 154 ~iG~~~a~~l~~~g~~V~~~~~~~~~~~--------~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga 225 (313)
+-+..+++.|+..|++|.+|||.-.... +.....++++.++.+|+|+++++.. +-..+--.+....|+++.
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~-~f~~l~~~~~~~~~~~~~ 95 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHD-EFRELDWEEIAKLMRKPP 95 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--G-GGGCCGHHHHHHHSCSSE
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCH-HHhccCHHHHHHhcCCCC
Confidence 4577899999999999999999875431 2444678999999999999999753 333332244567788899
Q ss_pred EEEEc
Q 021361 226 ILINI 230 (313)
Q Consensus 226 ~~in~ 230 (313)
+|+++
T Consensus 96 ~iiD~ 100 (106)
T PF03720_consen 96 VIIDG 100 (106)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 99996
No 264
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.57 E-value=0.0038 Score=55.05 Aligned_cols=88 Identities=23% Similarity=0.269 Sum_probs=60.2
Q ss_pred ccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc-------c---ccccCCHHHHHhhCCeeEEecCCC
Q 021361 137 ELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA-------N---YKYYTNIIDLASNCQILIVACSLT 206 (313)
Q Consensus 137 ~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-------~---~~~~~~l~~l~~~aDvv~l~~p~~ 206 (313)
+...+|+||+|.|||.|.+|..=++.|...|++|+++++....+. . .......+++. .+++|+.+++..
T Consensus 5 Pl~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~~-~~~lviaAt~d~ 83 (210)
T COG1648 5 PLFLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDLD-DAFLVIAATDDE 83 (210)
T ss_pred ceEEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhhhc-CceEEEEeCCCH
Confidence 456689999999999999999999999999999999998773210 0 01111233333 377777776532
Q ss_pred hHhhhccCHHHHhhcCCCcEEEEc
Q 021361 207 EETHHIVNRKVIDALGPSGILINI 230 (313)
Q Consensus 207 ~~t~~~i~~~~l~~mk~ga~~in~ 230 (313)
+ +|+..+..+++-.++||+
T Consensus 84 ~-----ln~~i~~~a~~~~i~vNv 102 (210)
T COG1648 84 E-----LNERIAKAARERRILVNV 102 (210)
T ss_pred H-----HHHHHHHHHHHhCCceec
Confidence 2 455566666666677776
No 265
>PLN02527 aspartate carbamoyltransferase
Probab=96.57 E-value=0.02 Score=53.42 Aligned_cols=89 Identities=21% Similarity=0.368 Sum_probs=63.3
Q ss_pred cCCCEEEEEcCC---hhHHHHHHHHHhc-CCcEEEECCCCccc----------cc--ccccCCHHHHHhhCCeeEEecCC
Q 021361 142 FSGKSVGIVGLG---RIGTAIAKRVEAF-GCPISYHSRSEKSD----------AN--YKYYTNIIDLASNCQILIVACSL 205 (313)
Q Consensus 142 l~g~~vgiiG~G---~iG~~~a~~l~~~-g~~V~~~~~~~~~~----------~~--~~~~~~l~~l~~~aDvv~l~~p~ 205 (313)
+.|++|+++|-+ ++.++++..+..+ |++|.+..|..-.. .+ .....++++.++++|+|.... .
T Consensus 149 l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~-~ 227 (306)
T PLN02527 149 LDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTR-I 227 (306)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECC-c
Confidence 789999999975 6889999998887 99998887754211 11 233578999999999998843 2
Q ss_pred ChH--------h-----hhccCHHHHhhcCCCcEEEEcC
Q 021361 206 TEE--------T-----HHIVNRKVIDALGPSGILINIG 231 (313)
Q Consensus 206 ~~~--------t-----~~~i~~~~l~~mk~ga~~in~~ 231 (313)
..+ . ...++.+.++.++++++|..+.
T Consensus 228 q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHcl 266 (306)
T PLN02527 228 QRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPL 266 (306)
T ss_pred chhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCC
Confidence 111 1 1345667777777777777654
No 266
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.56 E-value=0.0054 Score=55.38 Aligned_cols=87 Identities=20% Similarity=0.237 Sum_probs=57.8
Q ss_pred cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccc-------------cc-----------------cc----
Q 021361 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSD-------------AN-----------------YK---- 184 (313)
Q Consensus 140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~-------------~~-----------------~~---- 184 (313)
..|+.++|+|||+|.+|..+++.|...|. ++.++|...-.. .+ ..
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~ 107 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETI 107 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence 57999999999999999999999999997 577776532110 00 00
Q ss_pred --cc--CCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEc
Q 021361 185 --YY--TNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINI 230 (313)
Q Consensus 185 --~~--~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~ 230 (313)
.. .+.+++++++|+|+.++ .+.+++..+++...+. +.-+|..
T Consensus 108 ~~~i~~~~~~~~~~~~DiVi~~~-D~~~~r~~ln~~~~~~---~ip~v~~ 153 (245)
T PRK05690 108 NARLDDDELAALIAGHDLVLDCT-DNVATRNQLNRACFAA---KKPLVSG 153 (245)
T ss_pred eccCCHHHHHHHHhcCCEEEecC-CCHHHHHHHHHHHHHh---CCEEEEe
Confidence 00 12456778888888776 4666777777654443 3335554
No 267
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=96.53 E-value=0.019 Score=53.43 Aligned_cols=89 Identities=17% Similarity=0.218 Sum_probs=65.2
Q ss_pred cCCCEEEEEcCC---hhHHHHHHHHHhcCCcEEEECCCCcc-c---------cc--ccccCCHHHHHhhCCeeEEecCCC
Q 021361 142 FSGKSVGIVGLG---RIGTAIAKRVEAFGCPISYHSRSEKS-D---------AN--YKYYTNIIDLASNCQILIVACSLT 206 (313)
Q Consensus 142 l~g~~vgiiG~G---~iG~~~a~~l~~~g~~V~~~~~~~~~-~---------~~--~~~~~~l~~l~~~aDvv~l~~p~~ 206 (313)
+.|++|+++|-| ++.++++..+..+|++|.+..|..-. . .+ .....++++.++++|+|..-. ..
T Consensus 148 l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~-~~ 226 (301)
T TIGR00670 148 LDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTR-IQ 226 (301)
T ss_pred CCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECC-cc
Confidence 789999999995 99999999999999999988876431 1 12 223578999999999887732 11
Q ss_pred -------hHh-----hhccCHHHHhhcCCCcEEEEcC
Q 021361 207 -------EET-----HHIVNRKVIDALGPSGILINIG 231 (313)
Q Consensus 207 -------~~t-----~~~i~~~~l~~mk~ga~~in~~ 231 (313)
++. ..-++.+.++.++++++|..+.
T Consensus 227 ~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHcl 263 (301)
T TIGR00670 227 KERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPL 263 (301)
T ss_pred ccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCC
Confidence 010 2245677788888888887664
No 268
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=96.53 E-value=0.015 Score=52.55 Aligned_cols=88 Identities=15% Similarity=0.276 Sum_probs=59.4
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCC
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPS 224 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~g 224 (313)
.++-|+|.|.+++.+++.++.+|++|+++|++++...... +..++.+....| .+.+..+.++
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~~~--------~~~~~~~~~~~~----------~~~~~~~~~~ 162 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPEDL--------PDGVATLVTDEP----------EAEVAEAPPG 162 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccccC--------CCCceEEecCCH----------HHHHhcCCCC
Confidence 4899999999999999999999999999997754211111 123332221111 1222335567
Q ss_pred cEEEEcCCCCccCHHHHHHHHHhCCc
Q 021361 225 GILINIGRGAHIDEPELVSALLEGRL 250 (313)
Q Consensus 225 a~~in~~rg~~vd~~al~~al~~g~~ 250 (313)
+.+|-+.++--.|.+.|..+|++...
T Consensus 163 t~vvi~th~h~~D~~~L~~aL~~~~~ 188 (246)
T TIGR02964 163 SYFLVLTHDHALDLELCHAALRRGDF 188 (246)
T ss_pred cEEEEEeCChHHHHHHHHHHHhCCCC
Confidence 77777788888899988888854433
No 269
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=96.48 E-value=0.0089 Score=54.04 Aligned_cols=97 Identities=21% Similarity=0.235 Sum_probs=67.7
Q ss_pred cccccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcc-----------cccccccCCHHHHHhhCCeeEEecCC
Q 021361 138 LGSKFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKS-----------DANYKYYTNIIDLASNCQILIVACSL 205 (313)
Q Consensus 138 ~~~~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~-----------~~~~~~~~~l~~l~~~aDvv~l~~p~ 205 (313)
.|.+|+..+++|+|+ |.||..+|+.|.+.+.+....-|.... ..+.....|++....+.|+++.....
T Consensus 161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs~ 240 (351)
T COG5322 161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVASM 240 (351)
T ss_pred hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEeec
Confidence 478999999999997 999999999999988875544433221 12223345666666666666665533
Q ss_pred ChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHH
Q 021361 206 TEETHHIVNRKVIDALGPSGILINIGRGAHIDEP 239 (313)
Q Consensus 206 ~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~ 239 (313)
.+-..|+.+. +|||+.+++-|+..=+|+.
T Consensus 241 --~~g~~I~pq~---lkpg~~ivD~g~P~dvd~~ 269 (351)
T COG5322 241 --PKGVEIFPQH---LKPGCLIVDGGYPKDVDTS 269 (351)
T ss_pred --CCCceechhh---ccCCeEEEcCCcCcccccc
Confidence 3344577754 7999999999988766654
No 270
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=96.45 E-value=0.025 Score=53.48 Aligned_cols=91 Identities=11% Similarity=0.119 Sum_probs=66.7
Q ss_pred ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccc--------------cc--ccccCCHHHHHhhCCeeEEec
Q 021361 141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSD--------------AN--YKYYTNIIDLASNCQILIVAC 203 (313)
Q Consensus 141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~--------------~~--~~~~~~l~~l~~~aDvv~l~~ 203 (313)
.+.|++|+++|= .++.++++..+..+|++|.++.|..-.. .+ +....++++.++++|+|..-.
T Consensus 151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~ 230 (338)
T PRK02255 151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTDV 230 (338)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcc
Confidence 588999999997 6788999999999999999888764211 01 223578999999999998822
Q ss_pred -----CCC---hH------hhhccCHHHHhhcCCCcEEEEcC
Q 021361 204 -----SLT---EE------THHIVNRKVIDALGPSGILINIG 231 (313)
Q Consensus 204 -----p~~---~~------t~~~i~~~~l~~mk~ga~~in~~ 231 (313)
... ++ ....++++.++.+|++++|..+.
T Consensus 231 w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpL 272 (338)
T PRK02255 231 WYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCL 272 (338)
T ss_pred cHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCCC
Confidence 110 01 02456788888888888888776
No 271
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.45 E-value=0.012 Score=57.95 Aligned_cols=108 Identities=13% Similarity=0.164 Sum_probs=69.7
Q ss_pred ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc----------cccccc--CCHHHHHhhCCeeEEecCCChH
Q 021361 141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD----------ANYKYY--TNIIDLASNCQILIVACSLTEE 208 (313)
Q Consensus 141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----------~~~~~~--~~l~~l~~~aDvv~l~~p~~~~ 208 (313)
.+++++|+|+|+|..|.++|+.|+..|++|.++|+..... .+.... ....+.+.++|+|+.. |.-+.
T Consensus 11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~ 89 (458)
T PRK01710 11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRI 89 (458)
T ss_pred hhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCC
Confidence 4678999999999999999999999999999999764311 122111 2234556789998886 43322
Q ss_pred hh-----------hccCH-HHH-hhcCCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 021361 209 TH-----------HIVNR-KVI-DALGPSGILINIGRGAHIDEPELVSALLEGR 249 (313)
Q Consensus 209 t~-----------~~i~~-~~l-~~mk~ga~~in~~rg~~vd~~al~~al~~g~ 249 (313)
+. .++++ +.+ ...+...+-|--+.|+.-..+-+...|+...
T Consensus 90 ~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g 143 (458)
T PRK01710 90 DSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEG 143 (458)
T ss_pred CchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 21 12222 222 2223234556666788888887888887533
No 272
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.44 E-value=0.015 Score=56.41 Aligned_cols=86 Identities=13% Similarity=0.205 Sum_probs=62.8
Q ss_pred cCCCEEEEEcC----------ChhHHHHHHHHHhcCCcEEEECCCCcccc--cccccCCHHHHHhhCCeeEEecCCChHh
Q 021361 142 FSGKSVGIVGL----------GRIGTAIAKRVEAFGCPISYHSRSEKSDA--NYKYYTNIIDLASNCQILIVACSLTEET 209 (313)
Q Consensus 142 l~g~~vgiiG~----------G~iG~~~a~~l~~~g~~V~~~~~~~~~~~--~~~~~~~l~~l~~~aDvv~l~~p~~~~t 209 (313)
+.|++|+|+|+ .+-...+++.|...|++|.+|||...... ......++++.++.+|+|++++...+ .
T Consensus 311 ~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~ad~~v~~t~~~~-~ 389 (411)
T TIGR03026 311 LKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLPLIDDLEEALKGADALVILTDHDE-F 389 (411)
T ss_pred ccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhcccCCCHHHHHhCCCEEEEecCCHH-H
Confidence 68999999998 45778899999999999999999754321 11224688999999999999997643 2
Q ss_pred hhccCHHHHh-hcCCCcEEEEc
Q 021361 210 HHIVNRKVID-ALGPSGILINI 230 (313)
Q Consensus 210 ~~~i~~~~l~-~mk~ga~~in~ 230 (313)
+ -++-+.++ .|+ ..+++|.
T Consensus 390 ~-~~~~~~~~~~~~-~~~v~D~ 409 (411)
T TIGR03026 390 K-DLDLEKIKDLMK-GKVVVDT 409 (411)
T ss_pred h-ccCHHHHHHhcC-CCEEEeC
Confidence 2 24544444 354 4577774
No 273
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=96.38 E-value=0.0075 Score=55.99 Aligned_cols=57 Identities=12% Similarity=0.237 Sum_probs=42.1
Q ss_pred EEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccccc---------------cc--ccCCHHHHHhhCCeeEEecC
Q 021361 147 VGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDAN---------------YK--YYTNIIDLASNCQILIVACS 204 (313)
Q Consensus 147 vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~---------------~~--~~~~l~~l~~~aDvv~l~~p 204 (313)
|+|||.|.||..+|..+...|. +|+.+|+.++...+ .. ...+. +.+++||+|+++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecC
Confidence 6899999999999999987665 99999987643110 01 12344 45899999999774
No 274
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.37 E-value=0.0095 Score=53.63 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=32.6
Q ss_pred cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCC
Q 021361 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRS 176 (313)
Q Consensus 140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~ 176 (313)
..|++++|.|+|.|.+|..+|+.|...|. ++..+|+.
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 46899999999999999999999999997 47777754
No 275
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=96.37 E-value=0.027 Score=52.53 Aligned_cols=90 Identities=12% Similarity=0.187 Sum_probs=65.6
Q ss_pred cCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccc-----------cc--ccccCCHHHHHhhCCeeEEec----
Q 021361 142 FSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSD-----------AN--YKYYTNIIDLASNCQILIVAC---- 203 (313)
Q Consensus 142 l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----------~~--~~~~~~l~~l~~~aDvv~l~~---- 203 (313)
+.|++|+++|- +++.++++..+..+|++|.+..|..-.. .+ .....++++.++++|+|..-.
T Consensus 150 l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~ 229 (304)
T PRK00779 150 LKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVSM 229 (304)
T ss_pred cCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCcccc
Confidence 77899999998 7899999999999999999888754221 11 223578999999999998741
Q ss_pred CCC---hH-----hhhccCHHHHhhcCCCcEEEEcC
Q 021361 204 SLT---EE-----THHIVNRKVIDALGPSGILINIG 231 (313)
Q Consensus 204 p~~---~~-----t~~~i~~~~l~~mk~ga~~in~~ 231 (313)
... .+ ...-++++.++.+|++++|..+.
T Consensus 230 ~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHpl 265 (304)
T PRK00779 230 GQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHCL 265 (304)
T ss_pred ccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecCC
Confidence 110 11 12345677787788888887765
No 276
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=96.33 E-value=0.025 Score=53.44 Aligned_cols=91 Identities=10% Similarity=0.069 Sum_probs=65.9
Q ss_pred ccCCCEEEEEcCC--hhHHHHHHHHHhcCCcEEEECCCCccc--------------cc--ccccCCHHHHHhhCCeeEEe
Q 021361 141 KFSGKSVGIVGLG--RIGTAIAKRVEAFGCPISYHSRSEKSD--------------AN--YKYYTNIIDLASNCQILIVA 202 (313)
Q Consensus 141 ~l~g~~vgiiG~G--~iG~~~a~~l~~~g~~V~~~~~~~~~~--------------~~--~~~~~~l~~l~~~aDvv~l~ 202 (313)
.+.|++|++||=+ ++.++++..+..+|++|.++.|..-.. .+ +....++++.++++|+|..-
T Consensus 153 ~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~ 232 (334)
T PRK01713 153 PLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTD 232 (334)
T ss_pred CcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 4789999999986 688999999999999999888754211 12 22457899999999999873
Q ss_pred c----CCC-h--Hh------hhccCHHHHhhc-CCCcEEEEcC
Q 021361 203 C----SLT-E--ET------HHIVNRKVIDAL-GPSGILINIG 231 (313)
Q Consensus 203 ~----p~~-~--~t------~~~i~~~~l~~m-k~ga~~in~~ 231 (313)
. ... + .. ...++.+.++.. |++++|..+.
T Consensus 233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~l 275 (334)
T PRK01713 233 VWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCL 275 (334)
T ss_pred ceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCC
Confidence 2 110 0 11 224677888876 7889988875
No 277
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=96.30 E-value=0.0085 Score=58.44 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=44.7
Q ss_pred EEEEEcCChhHHHHHH---HH---HhcCCcEEEECCCCcccc-----------------cccccCCHHHHHhhCCeeEEe
Q 021361 146 SVGIVGLGRIGTAIAK---RV---EAFGCPISYHSRSEKSDA-----------------NYKYYTNIIDLASNCQILIVA 202 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~---~l---~~~g~~V~~~~~~~~~~~-----------------~~~~~~~l~~l~~~aDvv~l~ 202 (313)
+|+|||.|.+|...+- .+ ...|.+|..||+.++... ......++++.++.||+|+.+
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~a 81 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVINT 81 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEEe
Confidence 7999999999998555 22 334678999999864311 112346788999999999999
Q ss_pred cCC
Q 021361 203 CSL 205 (313)
Q Consensus 203 ~p~ 205 (313)
+|.
T Consensus 82 i~~ 84 (423)
T cd05297 82 IQV 84 (423)
T ss_pred eEe
Confidence 983
No 278
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.27 E-value=0.013 Score=54.77 Aligned_cols=91 Identities=22% Similarity=0.316 Sum_probs=59.0
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCccccc--------------ccc--cCCHHHHHhhCCeeEEecCCC
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSDAN--------------YKY--YTNIIDLASNCQILIVACSLT 206 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~--------------~~~--~~~l~~l~~~aDvv~l~~p~~ 206 (313)
.||+|||.|.+|..+|-.|...|. ++..+|...+...+ ... ..+.++ +++||+|+++.-..
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~~ 82 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGAR 82 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCCC
Confidence 589999999999999999986665 68889986643211 011 245555 89999999965432
Q ss_pred h---Hhh-hccC---------HHHHhhcCCCcEEEEcCCCCccCH
Q 021361 207 E---ETH-HIVN---------RKVIDALGPSGILINIGRGAHIDE 238 (313)
Q Consensus 207 ~---~t~-~~i~---------~~~l~~mk~ga~~in~~rg~~vd~ 238 (313)
+ .++ .++. .+.+....|.+++++++ .++|.
T Consensus 83 ~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs--NP~d~ 125 (312)
T cd05293 83 QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS--NPVDI 125 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc--ChHHH
Confidence 1 122 1111 12334457889999987 44443
No 279
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.27 E-value=0.019 Score=54.48 Aligned_cols=61 Identities=25% Similarity=0.273 Sum_probs=42.8
Q ss_pred EEEEEcCChhHHHHHHHHHh-cCCcEEE-ECCCCccc------------------------ccccccCCHHHHHhhCCee
Q 021361 146 SVGIVGLGRIGTAIAKRVEA-FGCPISY-HSRSEKSD------------------------ANYKYYTNIIDLASNCQIL 199 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~-~g~~V~~-~~~~~~~~------------------------~~~~~~~~l~~l~~~aDvv 199 (313)
+|||+|+|.||+.+++.+.. -++++.+ +++.++.. .+.....++++++.++|+|
T Consensus 3 kVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDVV 82 (341)
T PRK04207 3 KVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADIV 82 (341)
T ss_pred EEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCEE
Confidence 79999999999999998875 4677654 44333100 0111234678888899999
Q ss_pred EEecCCC
Q 021361 200 IVACSLT 206 (313)
Q Consensus 200 ~l~~p~~ 206 (313)
+.|+|..
T Consensus 83 IdaT~~~ 89 (341)
T PRK04207 83 VDATPGG 89 (341)
T ss_pred EECCCch
Confidence 9998754
No 280
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.27 E-value=0.037 Score=51.19 Aligned_cols=103 Identities=13% Similarity=0.164 Sum_probs=74.1
Q ss_pred CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCC--CcccccccccCCHHHHHhhCCeeEEecCCChHhh----------h
Q 021361 144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS--EKSDANYKYYTNIIDLASNCQILIVACSLTEETH----------H 211 (313)
Q Consensus 144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~--~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~----------~ 211 (313)
|++++|||.-.=-..+++.|...|++|..|... ...-.++..+.+.++.++++|+|++=+|.+.+.. -
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~ 80 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNEKV 80 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccccccccceeecchhhhhccCCEEEECCccccCCceEecccccCCc
Confidence 689999999998999999999999998776543 2222345555667777999999999998655421 1
Q ss_pred ccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361 212 IVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA 251 (313)
Q Consensus 212 ~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ 251 (313)
-++++.+++|+++++ +-+| ++..++.++.++.++.
T Consensus 81 ~l~~~~l~~~~~~~~-~~~G----~~~~~l~~~a~~~gi~ 115 (287)
T TIGR02853 81 VLTPELLESTKGHCT-IYVG----ISNPYLEQLAADAGVK 115 (287)
T ss_pred cccHHHHHhcCCCCE-EEEe----cCCHHHHHHHHHCCCe
Confidence 246889999997665 4444 3445555566777766
No 281
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.26 E-value=0.33 Score=44.57 Aligned_cols=180 Identities=19% Similarity=0.200 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhc----CC-------cEEE
Q 021361 104 VADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAF----GC-------PISY 172 (313)
Q Consensus 104 vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~----g~-------~V~~ 172 (313)
+|=.+++-+++.+|- .++.|...+|.|+|.|..|-.+|+.+... |. +++.
T Consensus 4 Ta~V~lAgllnAlk~-------------------~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~ 64 (279)
T cd05312 4 TAAVALAGLLAALRI-------------------TGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWL 64 (279)
T ss_pred HHHHHHHHHHHHHHH-------------------hCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEE
Confidence 555677777777663 24668899999999999999999999876 87 6888
Q ss_pred ECCCCc-----cc-cc-----c---c--ccCCHHHHHh--hCCeeEEecCCChHhhhccCHHHHhhcC---CCcEEEEcC
Q 021361 173 HSRSEK-----SD-AN-----Y---K--YYTNIIDLAS--NCQILIVACSLTEETHHIVNRKVIDALG---PSGILINIG 231 (313)
Q Consensus 173 ~~~~~~-----~~-~~-----~---~--~~~~l~~l~~--~aDvv~l~~p~~~~t~~~i~~~~l~~mk---~ga~~in~~ 231 (313)
+|+..- .. .. . . ...++.|+++ ++|+++=+. ...+.+.++.++.|. +..++.=.|
T Consensus 65 vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaLS 140 (279)
T cd05312 65 VDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLS----GVGGAFTEEVVRAMAKSNERPIIFALS 140 (279)
T ss_pred EcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeC----CCCCCCCHHHHHHHHhcCCCCEEEECC
Confidence 887641 00 00 0 1 2358999999 889877533 224789999999998 889999999
Q ss_pred CCCccCHHHHHHHHH--hCC-ceEEEccCCCCCCCCC-cccCCCCcEEEcCCCCCCcHHH-----HHHHHHHHHHHHHHH
Q 021361 232 RGAHIDEPELVSALL--EGR-LAGAGLDVYENEPEVP-EQMLGLNNVVLLPHVGSDTEET-----SKAMADLVIENLVAH 302 (313)
Q Consensus 232 rg~~vd~~al~~al~--~g~-~~ga~lDV~~~EP~~~-~~l~~~pnvi~TPHia~~t~~~-----~~~~~~~~~~ni~~~ 302 (313)
......|-.-.++.+ +|+ +.+.+.-.-+-+..-. ...-+..|+++=|=++-..-.+ .++|...+++-|-.+
T Consensus 141 NPt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~ 220 (279)
T cd05312 141 NPTSKAECTAEDAYKWTDGRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASL 220 (279)
T ss_pred CcCCccccCHHHHHHhhcCCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHh
Confidence 887644444444443 466 4322221111111001 1355678999999876433222 356666666666666
Q ss_pred HcCC
Q 021361 303 FSNK 306 (313)
Q Consensus 303 ~~g~ 306 (313)
..-+
T Consensus 221 ~~~~ 224 (279)
T cd05312 221 VTDE 224 (279)
T ss_pred CCcc
Confidence 5543
No 282
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=96.26 E-value=0.011 Score=48.48 Aligned_cols=85 Identities=15% Similarity=0.272 Sum_probs=51.0
Q ss_pred EEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcE
Q 021361 147 VGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGI 226 (313)
Q Consensus 147 vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~ 226 (313)
+-|+|.|.+++.+++.++.+|++|.++|++++. +..++-+. +.+. ++.. +.+ .+.+++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~-------------~~~~~~~~-~~~~-~~~~-----~~~-~~~~~t~ 59 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPER-------------FPEADEVI-CIPP-DDIL-----EDL-EIDPNTA 59 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC--------------TTSSEEE-CSHH-HHHH-----HHC--S-TT-E
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccc-------------cCCCCccE-ecCh-HHHH-----hcc-CCCCCeE
Confidence 468999999999999999999999999987541 12344322 2221 1111 111 3666777
Q ss_pred EEEcCCCCccCHHHHHHHHHhCCceEEE
Q 021361 227 LINIGRGAHIDEPELVSALLEGRLAGAG 254 (313)
Q Consensus 227 ~in~~rg~~vd~~al~~al~~g~~~ga~ 254 (313)
+| +.++.-.|.+.|.++|++. ..+.+
T Consensus 60 Vv-~th~h~~D~~~L~~~l~~~-~~YiG 85 (136)
T PF13478_consen 60 VV-MTHDHELDAEALEAALASP-ARYIG 85 (136)
T ss_dssp EE---S-CCCHHHHHHHHTTSS--SEEE
T ss_pred EE-EcCCchhHHHHHHHHHcCC-CCEEE
Confidence 66 8888889999999888873 44343
No 283
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.24 E-value=0.017 Score=55.47 Aligned_cols=37 Identities=19% Similarity=0.330 Sum_probs=33.5
Q ss_pred cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCC
Q 021361 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRS 176 (313)
Q Consensus 140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~ 176 (313)
..|++++|.|+|+|.+|..+++.|...|. ++..+|+.
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46899999999999999999999999998 58888875
No 284
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=96.23 E-value=0.019 Score=53.59 Aligned_cols=91 Identities=22% Similarity=0.291 Sum_probs=63.3
Q ss_pred cCCCEEEEEcCChhHHHHHHHHHh-------cCCcEEEECCCCc--c------------c------c------cccccCC
Q 021361 142 FSGKSVGIVGLGRIGTAIAKRVEA-------FGCPISYHSRSEK--S------------D------A------NYKYYTN 188 (313)
Q Consensus 142 l~g~~vgiiG~G~iG~~~a~~l~~-------~g~~V~~~~~~~~--~------------~------~------~~~~~~~ 188 (313)
..-++|+|||.|+.|+.+|+.+.. |..+|..|-+... . . . ......+
T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d 98 (372)
T KOG2711|consen 19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD 98 (372)
T ss_pred cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence 345799999999999999999863 2234543332211 1 0 0 1223478
Q ss_pred HHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCC
Q 021361 189 IIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGA 234 (313)
Q Consensus 189 l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~ 234 (313)
+.+++.+||+++..+|.+- +.. +.++...+.|+++..|....|=
T Consensus 99 l~ea~~dADilvf~vPhQf-~~~-ic~~l~g~vk~~~~aISL~KG~ 142 (372)
T KOG2711|consen 99 LVEAAKDADILVFVVPHQF-IPR-ICEQLKGYVKPGATAISLIKGV 142 (372)
T ss_pred HHHHhccCCEEEEeCChhh-HHH-HHHHHhcccCCCCeEEEeecce
Confidence 9999999999999999632 222 4566888899999999988763
No 285
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=96.22 E-value=0.14 Score=46.36 Aligned_cols=176 Identities=18% Similarity=0.138 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCC-----------cEEE
Q 021361 104 VADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGC-----------PISY 172 (313)
Q Consensus 104 vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-----------~V~~ 172 (313)
+|=-+++-+++.+|- .|+.|.+.+|.|+|.|..|-.+|+.|...+. +++.
T Consensus 4 TaaV~lAgllnAlk~-------------------~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~ 64 (254)
T cd00762 4 TASVAVAGLLAALKV-------------------TKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWX 64 (254)
T ss_pred hHHHHHHHHHHHHHH-------------------hCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEE
Confidence 455677777777662 2456889999999999999999999987665 5888
Q ss_pred ECCCCc----c--c----cc-------ccccCCHHHHHh--hCCeeEEecCCChHhhhccCHHHHhhcC---CCcEEEEc
Q 021361 173 HSRSEK----S--D----AN-------YKYYTNIIDLAS--NCQILIVACSLTEETHHIVNRKVIDALG---PSGILINI 230 (313)
Q Consensus 173 ~~~~~~----~--~----~~-------~~~~~~l~~l~~--~aDvv~l~~p~~~~t~~~i~~~~l~~mk---~ga~~in~ 230 (313)
+|+..- . . .. .....++.|+++ +.|+++=.. ...+.+.++.++.|. +..++.=.
T Consensus 65 vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaL 140 (254)
T cd00762 65 VDRKGLLVKNRKETCPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAEINERPVIFAL 140 (254)
T ss_pred ECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhhcCCCCEEEEC
Confidence 887531 0 0 00 012358999999 899877533 235789999999998 88999999
Q ss_pred CCCCccCHHHHHHHHHh--CC-ceEEEccCCCCCCCCCc---ccCCCCcEEEcCCCCCCcHHH-----HHHHHHHHHHHH
Q 021361 231 GRGAHIDEPELVSALLE--GR-LAGAGLDVYENEPEVPE---QMLGLNNVVLLPHVGSDTEET-----SKAMADLVIENL 299 (313)
Q Consensus 231 ~rg~~vd~~al~~al~~--g~-~~ga~lDV~~~EP~~~~---~l~~~pnvi~TPHia~~t~~~-----~~~~~~~~~~ni 299 (313)
|.....-|-.-.++.+- |+ +.+-+.-.+..+- +. ..-+..|+++=|=++-..-.+ .++|...+++-|
T Consensus 141 SNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~--~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aL 218 (254)
T cd00762 141 SNPTSKAECTAEEAYTATEGRAIFASGSPFHPVEL--NGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAI 218 (254)
T ss_pred CCcCCccccCHHHHHhhcCCCEEEEECCCCCCccc--CCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHH
Confidence 88776444333344433 43 3322221111111 11 244778999999776332222 255555555555
Q ss_pred HHHHc
Q 021361 300 VAHFS 304 (313)
Q Consensus 300 ~~~~~ 304 (313)
-.+..
T Consensus 219 A~~v~ 223 (254)
T cd00762 219 ASSVT 223 (254)
T ss_pred HhhCC
Confidence 55544
No 286
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=96.22 E-value=0.011 Score=56.62 Aligned_cols=58 Identities=24% Similarity=0.447 Sum_probs=44.1
Q ss_pred CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccccc--c--c---cc---CCHHHHHhhCCeeEE
Q 021361 144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDAN--Y--K---YY---TNIIDLASNCQILIV 201 (313)
Q Consensus 144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~--~--~---~~---~~l~~l~~~aDvv~l 201 (313)
.++|||||.|..|+.+++.++.+|++|.++|+.+..... + . .+ ..+.++++.||+|..
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 378999999999999999999999999999987654211 0 0 01 236667888998764
No 287
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=96.16 E-value=0.017 Score=54.83 Aligned_cols=83 Identities=16% Similarity=0.221 Sum_probs=54.0
Q ss_pred CEEEEEcC-ChhHHHHHHHHHhc-CCcEE-EECCCC--cccc--------cc-c-ccC--CHHHHHhhCCeeEEecCCCh
Q 021361 145 KSVGIVGL-GRIGTAIAKRVEAF-GCPIS-YHSRSE--KSDA--------NY-K-YYT--NIIDLASNCQILIVACSLTE 207 (313)
Q Consensus 145 ~~vgiiG~-G~iG~~~a~~l~~~-g~~V~-~~~~~~--~~~~--------~~-~-~~~--~l~~l~~~aDvv~l~~p~~~ 207 (313)
.+|+|+|. |.+|+.+++.|..+ +.++. .++++. .+.. +. . .+. +.+++..++|+|++|+|...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~ 80 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV 80 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence 37999998 99999999999977 67776 335332 1110 10 0 112 45666678999999999642
Q ss_pred HhhhccCHHHHhh-cCCCcEEEEcCCC
Q 021361 208 ETHHIVNRKVIDA-LGPSGILINIGRG 233 (313)
Q Consensus 208 ~t~~~i~~~~l~~-mk~ga~~in~~rg 233 (313)
+ . +.... .+.|..+|+.|-.
T Consensus 81 s-~-----~~~~~~~~~G~~VIDlS~~ 101 (346)
T TIGR01850 81 S-A-----ELAPELLAAGVKVIDLSAD 101 (346)
T ss_pred H-H-----HHHHHHHhCCCEEEeCChh
Confidence 2 2 22222 2568889998843
No 288
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=96.11 E-value=0.023 Score=52.87 Aligned_cols=108 Identities=19% Similarity=0.250 Sum_probs=70.1
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc------ccccc-----------ccCCHHHHHhhCCeeEEecCCCh
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS------DANYK-----------YYTNIIDLASNCQILIVACSLTE 207 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~------~~~~~-----------~~~~l~~l~~~aDvv~l~~p~~~ 207 (313)
.+|+|+|.|.||.-+|-+|...|.+|..++|..+. ..+.. ......+....+|+|++++-..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~- 81 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY- 81 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-
Confidence 37999999999999999999999999999986421 11110 0011112245789999998643
Q ss_pred HhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEc
Q 021361 208 ETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGL 255 (313)
Q Consensus 208 ~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~l 255 (313)
++...+ +.....+.+++.+|-.- -++-.++.+.+.+.+.++.++..
T Consensus 82 ~~~~al-~~l~~~l~~~t~vv~lQ-NGv~~~e~l~~~~~~~~v~~g~~ 127 (305)
T PRK05708 82 DAEPAV-ASLAHRLAPGAELLLLQ-NGLGSQDAVAARVPHARCIFASS 127 (305)
T ss_pred hHHHHH-HHHHhhCCCCCEEEEEe-CCCCCHHHHHHhCCCCcEEEEEe
Confidence 333333 33555677888766653 34456677777776666665443
No 289
>PRK08328 hypothetical protein; Provisional
Probab=96.09 E-value=0.018 Score=51.51 Aligned_cols=37 Identities=27% Similarity=0.449 Sum_probs=32.8
Q ss_pred cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCC
Q 021361 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRS 176 (313)
Q Consensus 140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~ 176 (313)
..|++++|.|+|+|.+|..+++.|...|. ++..+|..
T Consensus 23 ~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 23 EKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 56899999999999999999999999998 47777754
No 290
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.08 E-value=0.0097 Score=53.01 Aligned_cols=64 Identities=17% Similarity=0.282 Sum_probs=47.6
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccccc-------ccc-------cCCHHHH-HhhCCeeEEecCCChH
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDAN-------YKY-------YTNIIDL-ASNCQILIVACSLTEE 208 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~-------~~~-------~~~l~~l-~~~aDvv~l~~p~~~~ 208 (313)
+++.|+|+|.+|..+|+.|...|++|..+++..+.... ... ...|.++ +.++|+++.++..+..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~ 79 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEV 79 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHH
Confidence 47999999999999999999999999999987653211 111 1224444 6789999998876443
No 291
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.07 E-value=0.02 Score=54.61 Aligned_cols=84 Identities=13% Similarity=0.270 Sum_probs=62.2
Q ss_pred cCCCEEEEEcCC----------hhHHHHHHHHHhcCCcEEEECCCCcccc-----cccccCCHHHHHhhCCeeEEecCCC
Q 021361 142 FSGKSVGIVGLG----------RIGTAIAKRVEAFGCPISYHSRSEKSDA-----NYKYYTNIIDLASNCQILIVACSLT 206 (313)
Q Consensus 142 l~g~~vgiiG~G----------~iG~~~a~~l~~~g~~V~~~~~~~~~~~-----~~~~~~~l~~l~~~aDvv~l~~p~~ 206 (313)
|+||+|||+|+- .-...++++|+..|.+|.+|||-..... +.....++++++++||+++++..+.
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~tew~ 387 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTEWD 387 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEeccHH
Confidence 889999999985 3567899999999999999999764321 2455689999999999999988653
Q ss_pred hHhhhccCHHHHhhcCCCcEEEE
Q 021361 207 EETHHIVNRKVIDALGPSGILIN 229 (313)
Q Consensus 207 ~~t~~~i~~~~l~~mk~ga~~in 229 (313)
+ .+ -++-+.+ .|| +.++++
T Consensus 388 e-f~-~~d~~~~-~m~-~~~v~D 406 (414)
T COG1004 388 E-FR-DLDFEKL-LMK-TPVVID 406 (414)
T ss_pred H-Hh-ccChhhh-hcc-CCEEEe
Confidence 2 22 2343344 565 455555
No 292
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=96.06 E-value=0.013 Score=56.39 Aligned_cols=93 Identities=12% Similarity=0.192 Sum_probs=60.9
Q ss_pred CCCEEEEEcC-ChhHHHHHHHHHhc-CCcEEEECCCCcccc--c----------ccccCCHHH-HHhhCCeeEEecCCCh
Q 021361 143 SGKSVGIVGL-GRIGTAIAKRVEAF-GCPISYHSRSEKSDA--N----------YKYYTNIID-LASNCQILIVACSLTE 207 (313)
Q Consensus 143 ~g~~vgiiG~-G~iG~~~a~~l~~~-g~~V~~~~~~~~~~~--~----------~~~~~~l~~-l~~~aDvv~l~~p~~~ 207 (313)
.-++|+|+|. |.+|+.+.+.|... +++|..+.+...... . .....+++. .++++|+|++++|..
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~- 115 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG- 115 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH-
Confidence 4568999998 89999999999887 778877654322110 0 001122222 258899999999853
Q ss_pred HhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHH
Q 021361 208 ETHHIVNRKVIDALGPSGILINIGRGAHIDEPEL 241 (313)
Q Consensus 208 ~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al 241 (313)
...+....|+.|..+|+.+..-..+.++.
T Consensus 116 -----~s~~i~~~~~~g~~VIDlSs~fRl~~~~~ 144 (381)
T PLN02968 116 -----TTQEIIKALPKDLKIVDLSADFRLRDIAE 144 (381)
T ss_pred -----HHHHHHHHHhCCCEEEEcCchhccCCccc
Confidence 23344444567899999986655555433
No 293
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.04 E-value=0.037 Score=54.15 Aligned_cols=107 Identities=15% Similarity=0.203 Sum_probs=69.7
Q ss_pred ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc----------cccc--ccCCHHHHHhhCCeeEEecCCChH
Q 021361 141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD----------ANYK--YYTNIIDLASNCQILIVACSLTEE 208 (313)
Q Consensus 141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----------~~~~--~~~~l~~l~~~aDvv~l~~p~~~~ 208 (313)
.+++|++.|+|.|.+|.++|+.|...|++|.++|+..... .+.. .....++...++|+|+.+.-..+.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~ 81 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD 81 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence 3679999999999999999999999999999999875221 0111 112344566789999987654433
Q ss_pred hhhc----------cC-HHHHhh-cCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361 209 THHI----------VN-RKVIDA-LGPSGILINIGRGAHIDEPELVSALLE 247 (313)
Q Consensus 209 t~~~----------i~-~~~l~~-mk~ga~~in~~rg~~vd~~al~~al~~ 247 (313)
...+ +. .+.+.. .+.-.+-|--+.|+..-.+-|...|+.
T Consensus 82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~ 132 (450)
T PRK14106 82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN 132 (450)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 2211 11 112222 232244455557888888878888865
No 294
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=96.03 E-value=0.017 Score=50.31 Aligned_cols=37 Identities=19% Similarity=0.352 Sum_probs=33.4
Q ss_pred cccCCCEEEEEcCChhHHHHHHHHHhcCCc-EEEECCC
Q 021361 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRS 176 (313)
Q Consensus 140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~ 176 (313)
+.|++++|.|+|+|.+|..+++.|...|.. +..+|..
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 579999999999999999999999999985 7888765
No 295
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=96.01 E-value=0.047 Score=51.02 Aligned_cols=89 Identities=16% Similarity=0.259 Sum_probs=61.6
Q ss_pred cCCCEEEEEcC---ChhHHHHHHHHHhcCC-cEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCCh-----
Q 021361 142 FSGKSVGIVGL---GRIGTAIAKRVEAFGC-PISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTE----- 207 (313)
Q Consensus 142 l~g~~vgiiG~---G~iG~~~a~~l~~~g~-~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~----- 207 (313)
+.|++|+++|= +++.++++..+..+|+ +|.+..|..-.. .......++++.++++|+|.. .....
T Consensus 155 l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~-~~~~~er~~~ 233 (310)
T PRK13814 155 WNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVT-LRLQKERHDN 233 (310)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEE-Cccccccccc
Confidence 77999999998 5999999999999999 898888754221 113345789999999999987 22210
Q ss_pred -H----h--hhccCHHHHhhcCCCcEEEEcC
Q 021361 208 -E----T--HHIVNRKVIDALGPSGILINIG 231 (313)
Q Consensus 208 -~----t--~~~i~~~~l~~mk~ga~~in~~ 231 (313)
. . ...++.+.++.+|++++|.-+.
T Consensus 234 ~~~~~~~~~~y~v~~~~l~~a~~~~i~mHcL 264 (310)
T PRK13814 234 SVDIDAFRGSFRLTPEKLYSAKPDAIVMHPG 264 (310)
T ss_pred hhHHHHhCCCcccCHHHHHhcCCCCEEECCC
Confidence 0 0 1234555555566666665554
No 296
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=95.99 E-value=0.22 Score=51.93 Aligned_cols=156 Identities=13% Similarity=0.173 Sum_probs=107.3
Q ss_pred CCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCC
Q 021361 89 KAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGC 168 (313)
Q Consensus 89 ~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~ 168 (313)
..|++.|. +.++ +|=.+++-+++.+|- .|+.+...+|.|.|.|.-|-.+++.|...|.
T Consensus 152 ~~ip~f~D-D~~G--Ta~v~lA~l~na~~~-------------------~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~ 209 (752)
T PRK07232 152 MDIPVFHD-DQHG--TAIISAAALLNALEL-------------------VGKKIEDVKIVVSGAGAAAIACLNLLVALGA 209 (752)
T ss_pred cCCCeecc-ccch--HHHHHHHHHHHHHHH-------------------hCCChhhcEEEEECccHHHHHHHHHHHHcCC
Confidence 36899888 4444 666778888887663 2567888999999999999999999999998
Q ss_pred ---cEEEECCCCc----c---ccc-----c--cccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcC
Q 021361 169 ---PISYHSRSEK----S---DAN-----Y--KYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIG 231 (313)
Q Consensus 169 ---~V~~~~~~~~----~---~~~-----~--~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~ 231 (313)
+++.+|+..- . ... + ....++.|+++.+|+++= +. ..+.+.++.++.|.+..++.=.|
T Consensus 210 ~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG-~s----~~g~~~~~~v~~M~~~piifals 284 (752)
T PRK07232 210 KKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLG-LS----AAGVLTPEMVKSMADNPIIFALA 284 (752)
T ss_pred CcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEE-cC----CCCCCCHHHHHHhccCCEEEecC
Confidence 6888887531 1 000 0 113589999999997664 32 25789999999999999999998
Q ss_pred CCCcc-CHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCC
Q 021361 232 RGAHI-DEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVG 281 (313)
Q Consensus 232 rg~~v-d~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia 281 (313)
....- ..+..+++ ..|.+.+-+ -.. .--+..|+++=|=++
T Consensus 285 NP~~E~~p~~a~~~-~~~~i~atG---rs~------~pnQ~NN~~~FPgi~ 325 (752)
T PRK07232 285 NPDPEITPEEAKAV-RPDAIIATG---RSD------YPNQVNNVLCFPYIF 325 (752)
T ss_pred CCCccCCHHHHHHh-cCCEEEEEC---CcC------CCCcccceeecchhh
Confidence 87752 22323322 223344222 111 124557888888665
No 297
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=95.99 E-value=0.032 Score=50.97 Aligned_cols=60 Identities=20% Similarity=0.254 Sum_probs=43.3
Q ss_pred EEEEEc-CChhHHHHHHHHHh-cCCcEE-EECCCCccc-------------ccccccCCHHHHHhhCCeeEEecCC
Q 021361 146 SVGIVG-LGRIGTAIAKRVEA-FGCPIS-YHSRSEKSD-------------ANYKYYTNIIDLASNCQILIVACSL 205 (313)
Q Consensus 146 ~vgiiG-~G~iG~~~a~~l~~-~g~~V~-~~~~~~~~~-------------~~~~~~~~l~~l~~~aDvv~l~~p~ 205 (313)
+|+|+| +|.||+.+++.+.. -++++. ++|+..... .+...+.+++++...+|+|+.+.|.
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p 78 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTP 78 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCCh
Confidence 799999 69999999999875 588864 577432211 1233457888885579999998853
No 298
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=95.97 E-value=0.029 Score=52.88 Aligned_cols=90 Identities=13% Similarity=0.164 Sum_probs=64.4
Q ss_pred cCCCEEEEEcCC--hhHHHHHHHHHhcCCcEEEECCCCccc--------------cc--ccccCCHHHHHhhCCeeEEec
Q 021361 142 FSGKSVGIVGLG--RIGTAIAKRVEAFGCPISYHSRSEKSD--------------AN--YKYYTNIIDLASNCQILIVAC 203 (313)
Q Consensus 142 l~g~~vgiiG~G--~iG~~~a~~l~~~g~~V~~~~~~~~~~--------------~~--~~~~~~l~~l~~~aDvv~l~~ 203 (313)
+.|++|++||-+ ++.++++..+..+|++|.+..|..-.. .+ .....+++++++++|+|..-+
T Consensus 153 l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~ 232 (331)
T PRK02102 153 LKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTDV 232 (331)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 789999999997 789999999999999998887754221 11 223578999999999998842
Q ss_pred CC-------ChH-----hhhccCHHHHh-hcCCCcEEEEcC
Q 021361 204 SL-------TEE-----THHIVNRKVID-ALGPSGILINIG 231 (313)
Q Consensus 204 p~-------~~~-----t~~~i~~~~l~-~mk~ga~~in~~ 231 (313)
=. .++ ...-++++.++ .+|++++|.-+.
T Consensus 233 w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~l 273 (331)
T PRK02102 233 WVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHCL 273 (331)
T ss_pred cccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECCC
Confidence 10 011 12345677777 468888887765
No 299
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=95.97 E-value=0.051 Score=50.69 Aligned_cols=90 Identities=13% Similarity=0.195 Sum_probs=65.5
Q ss_pred cCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccc--------------cc--ccccCCHHHHHhhCCeeEEec-
Q 021361 142 FSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSD--------------AN--YKYYTNIIDLASNCQILIVAC- 203 (313)
Q Consensus 142 l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~--------------~~--~~~~~~l~~l~~~aDvv~l~~- 203 (313)
+.|.+|+++|- +++.++++..+..+|++|.+..|..-.. .+ .....++++.++++|+|..-.
T Consensus 146 l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w 225 (304)
T TIGR00658 146 LKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVW 225 (304)
T ss_pred CCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence 78999999997 6888999999999999998888654221 11 223578999999999998732
Q ss_pred -CCC-----hH-----hhhccCHHHHhhcCCCcEEEEcC
Q 021361 204 -SLT-----EE-----THHIVNRKVIDALGPSGILINIG 231 (313)
Q Consensus 204 -p~~-----~~-----t~~~i~~~~l~~mk~ga~~in~~ 231 (313)
... ++ ....++++.++.+|++++|.-+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHpl 264 (304)
T TIGR00658 226 VSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHCL 264 (304)
T ss_pred ccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECCC
Confidence 000 01 12356778888888888887765
No 300
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.97 E-value=0.036 Score=51.05 Aligned_cols=102 Identities=20% Similarity=0.262 Sum_probs=68.8
Q ss_pred ccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccccc----cc------ccCCHHHHH--hhCCeeEEecCCCh
Q 021361 141 KFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDAN----YK------YYTNIIDLA--SNCQILIVACSLTE 207 (313)
Q Consensus 141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~----~~------~~~~l~~l~--~~aDvv~l~~p~~~ 207 (313)
...|+++.|+|.|..+++++..|+..|+ +|++++|+.++... .. ......++- .++|+|+.++|.--
T Consensus 123 ~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm 202 (283)
T COG0169 123 DVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGM 202 (283)
T ss_pred ccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCC
Confidence 4579999999999999999999999996 69999998764211 00 011222221 16999999999743
Q ss_pred Hhh---hccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361 208 ETH---HIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLE 247 (313)
Q Consensus 208 ~t~---~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~ 247 (313)
.-. ..++ .+.++++.++.++--.+. +. .|++..++
T Consensus 203 ~~~~~~~~~~---~~~l~~~~~v~D~vY~P~-~T-plL~~A~~ 240 (283)
T COG0169 203 AGPEGDSPVP---AELLPKGAIVYDVVYNPL-ET-PLLREARA 240 (283)
T ss_pred CCCCCCCCCc---HHhcCcCCEEEEeccCCC-CC-HHHHHHHH
Confidence 322 1333 466888999999876664 33 44444444
No 301
>PRK10637 cysG siroheme synthase; Provisional
Probab=95.96 E-value=0.016 Score=57.02 Aligned_cols=91 Identities=16% Similarity=0.187 Sum_probs=59.6
Q ss_pred cccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc------c-cccc--CCHHHHHhhCCeeEEecCCC
Q 021361 136 FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA------N-YKYY--TNIIDLASNCQILIVACSLT 206 (313)
Q Consensus 136 ~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~------~-~~~~--~~l~~l~~~aDvv~l~~p~~ 206 (313)
+|..-+|+||+|.|||.|.++..=++.|..+|++|.++++.-.... + .... .=..+.++.+++|+.++...
T Consensus 4 ~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~ 83 (457)
T PRK10637 4 LPIFCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDD 83 (457)
T ss_pred eceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCH
Confidence 3556689999999999999999988999999999999987643221 0 1100 11234567888877776543
Q ss_pred hHhhhccCHHHHhhcCCCcEEEEcC
Q 021361 207 EETHHIVNRKVIDALGPSGILINIG 231 (313)
Q Consensus 207 ~~t~~~i~~~~l~~mk~ga~~in~~ 231 (313)
+ +|.+.....+...+++|++
T Consensus 84 ~-----~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 84 A-----VNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred H-----HhHHHHHHHHHcCcEEEEC
Confidence 2 3444444444445555543
No 302
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.96 E-value=0.036 Score=54.51 Aligned_cols=108 Identities=21% Similarity=0.199 Sum_probs=68.1
Q ss_pred ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEec--CCC-h----H
Q 021361 141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVAC--SLT-E----E 208 (313)
Q Consensus 141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~--p~~-~----~ 208 (313)
++.|++|.|+|+|..|.++|+.|+..|++|.++|...... .+......-.+-+.++|+|+.+- |.+ + .
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~ 85 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWV 85 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHH
Confidence 4778999999999999999999999999999999754311 12221111122356799877533 211 1 1
Q ss_pred hh---h----ccCH-HHHhh-c-----CCCcEEEEcCCCCccCHHHHHHHHHhC
Q 021361 209 TH---H----IVNR-KVIDA-L-----GPSGILINIGRGAHIDEPELVSALLEG 248 (313)
Q Consensus 209 t~---~----~i~~-~~l~~-m-----k~ga~~in~~rg~~vd~~al~~al~~g 248 (313)
.. . ++.+ +.+.. + +...+-|.-+.|+.--.+-+...|+..
T Consensus 86 v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~ 139 (460)
T PRK01390 86 VDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREA 139 (460)
T ss_pred HHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence 11 1 1332 22222 2 333556666689988888888888763
No 303
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.94 E-value=0.037 Score=48.86 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=33.3
Q ss_pred cccCCCEEEEEcCChhHHHHHHHHHhcCCc-EEEECCC
Q 021361 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRS 176 (313)
Q Consensus 140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~ 176 (313)
..|+.++|+|||+|.+|..+|+.|...|.. +..+|..
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 468999999999999999999999999985 8888765
No 304
>PRK08223 hypothetical protein; Validated
Probab=95.92 E-value=0.027 Score=51.87 Aligned_cols=80 Identities=11% Similarity=0.147 Sum_probs=54.8
Q ss_pred cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcc-------------ccc-----------------c--c--
Q 021361 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKS-------------DAN-----------------Y--K-- 184 (313)
Q Consensus 140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~-------------~~~-----------------~--~-- 184 (313)
..|++.+|.|||+|.+|..+++.|...|. ++..+|...-. ..+ . .
T Consensus 23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~ 102 (287)
T PRK08223 23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAF 102 (287)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEE
Confidence 46999999999999999999999999998 47776643210 000 0 0
Q ss_pred ----ccCCHHHHHhhCCeeEEecCCC-hHhhhccCHHHHh
Q 021361 185 ----YYTNIIDLASNCQILIVACSLT-EETHHIVNRKVID 219 (313)
Q Consensus 185 ----~~~~l~~l~~~aDvv~l~~p~~-~~t~~~i~~~~l~ 219 (313)
...+.+++++++|+|+-++..- -+++.+++..-.+
T Consensus 103 ~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~ 142 (287)
T PRK08223 103 PEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQ 142 (287)
T ss_pred ecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 0135678888899888666321 2567777765433
No 305
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.89 E-value=0.014 Score=55.81 Aligned_cols=79 Identities=14% Similarity=0.241 Sum_probs=55.7
Q ss_pred cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcc-------------ccc-----------------cc--c-
Q 021361 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKS-------------DAN-----------------YK--Y- 185 (313)
Q Consensus 140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~-------------~~~-----------------~~--~- 185 (313)
..|++++|.|||+|.+|..+++.|...|. ++..+|...-. ..+ .. .
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~ 116 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNAL 116 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEe
Confidence 57999999999999999999999999998 68887764210 000 00 0
Q ss_pred -----cCCHHHHHhhCCeeEEecCCChHhhhccCHHHHh
Q 021361 186 -----YTNIIDLASNCQILIVACSLTEETHHIVNRKVID 219 (313)
Q Consensus 186 -----~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~ 219 (313)
..+..++++++|+|+.|+ .+.+++.++++...+
T Consensus 117 ~~~i~~~~~~~~~~~~DlVid~~-Dn~~~r~~in~~~~~ 154 (370)
T PRK05600 117 RERLTAENAVELLNGVDLVLDGS-DSFATKFLVADAAEI 154 (370)
T ss_pred eeecCHHHHHHHHhCCCEEEECC-CCHHHHHHHHHHHHH
Confidence 124567888899887665 466777777764433
No 306
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.89 E-value=0.04 Score=54.49 Aligned_cols=98 Identities=11% Similarity=0.187 Sum_probs=69.7
Q ss_pred ccCCCEEEEEcC----------ChhHHHHHHHHHhcCCcEEEECCCCcccc---------------------------cc
Q 021361 141 KFSGKSVGIVGL----------GRIGTAIAKRVEAFGCPISYHSRSEKSDA---------------------------NY 183 (313)
Q Consensus 141 ~l~g~~vgiiG~----------G~iG~~~a~~l~~~g~~V~~~~~~~~~~~---------------------------~~ 183 (313)
.+.|++|+|+|+ .+-...+++.|...|.+|.+||+.-.... ..
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV 400 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence 588999999998 55788999999999999999999743210 01
Q ss_pred cccCCHHHHHhhCCeeEEecCCChHhhhccCHH-HHhhcCCCcEEEEcCCCCccCHHHHH
Q 021361 184 KYYTNIIDLASNCQILIVACSLTEETHHIVNRK-VIDALGPSGILINIGRGAHIDEPELV 242 (313)
Q Consensus 184 ~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~-~l~~mk~ga~~in~~rg~~vd~~al~ 242 (313)
..+.++.+.+++||+|++++...+ .+. ++-+ ..+.|++..+++|. |+ ++|.+.+.
T Consensus 401 ~~~~~~~~a~~~aD~vvi~t~~~e-f~~-l~~~~~~~~m~~~~~viD~-rn-~l~~~~~~ 456 (473)
T PLN02353 401 SVVWDAYEATKGAHGICILTEWDE-FKT-LDYQKIYDNMQKPAFVFDG-RN-VLDHEKLR 456 (473)
T ss_pred eeeCCHHHHhcCCCEEEECCCChH-hcc-cCHHHHHHhccCCCEEEEC-CC-CCCHHHHH
Confidence 223466789999999999997643 232 3433 35557766688884 54 45765554
No 307
>PRK12862 malic enzyme; Reviewed
Probab=95.87 E-value=0.27 Score=51.45 Aligned_cols=155 Identities=12% Similarity=0.146 Sum_probs=107.3
Q ss_pred CcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCC-
Q 021361 90 AVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGC- 168 (313)
Q Consensus 90 gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~- 168 (313)
+|++.|. +.++ +|=.+++-+++.+|- .|+.+...+|.|.|.|.-|-.+|+.|...|.
T Consensus 161 ~ip~f~D-D~~G--Ta~v~la~l~~a~~~-------------------~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~ 218 (763)
T PRK12862 161 KIPVFHD-DQHG--TAIIVAAALLNGLKL-------------------VGKDIEDVKLVASGAGAAALACLDLLVSLGVK 218 (763)
T ss_pred CCceEec-Cccc--HHHHHHHHHHHHHHH-------------------hCCChhhcEEEEEChhHHHHHHHHHHHHcCCC
Confidence 6999998 4444 666778888887663 2567889999999999999999999999998
Q ss_pred --cEEEECCCCc----c---ccc-----c--cccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCC
Q 021361 169 --PISYHSRSEK----S---DAN-----Y--KYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGR 232 (313)
Q Consensus 169 --~V~~~~~~~~----~---~~~-----~--~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~r 232 (313)
+++.+|+..- . ... + ....++.|+++.+|+++=.. +.+.+.++.++.|.+..++.=.|.
T Consensus 219 ~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~v~~M~~~piifalsN 293 (763)
T PRK12862 219 RENIWVTDIKGVVYEGRTELMDPWKARYAQKTDARTLAEVIEGADVFLGLS-----AAGVLKPEMVKKMAPRPLIFALAN 293 (763)
T ss_pred cccEEEEcCCCeeeCCCCccccHHHHHHhhhcccCCHHHHHcCCCEEEEcC-----CCCCCCHHHHHHhccCCEEEeCCC
Confidence 6888886531 0 000 0 11358999999999776532 257899999999999999999887
Q ss_pred CCcc-CHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCC
Q 021361 233 GAHI-DEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVG 281 (313)
Q Consensus 233 g~~v-d~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia 281 (313)
...- ..+..+++ ..|.+.+-+- . ..--+..|+++=|=++
T Consensus 294 P~~E~~p~~a~~~-~~~~i~atGr---s------~~p~Q~NN~~~FPgi~ 333 (763)
T PRK12862 294 PTPEILPEEARAV-RPDAIIATGR---S------DYPNQVNNVLCFPYIF 333 (763)
T ss_pred CcccCCHHHHHHh-cCCEEEEECC---c------CCCCcccceeeccchh
Confidence 7642 22223332 2233442221 1 1124567888888766
No 308
>PRK06270 homoserine dehydrogenase; Provisional
Probab=95.86 E-value=0.045 Score=51.85 Aligned_cols=107 Identities=12% Similarity=0.162 Sum_probs=64.4
Q ss_pred CEEEEEcCChhHHHHHHHHHhc----------CCcEE-EECCCCc-------cc---------cc-cc------ccCCHH
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAF----------GCPIS-YHSRSEK-------SD---------AN-YK------YYTNII 190 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~----------g~~V~-~~~~~~~-------~~---------~~-~~------~~~~l~ 190 (313)
-+|||+|+|.||+.+++.+... +++|. ++|++.. .. .+ .. ...+++
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 3799999999999999998754 45654 4554321 00 00 00 123788
Q ss_pred HHHh--hCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCc-cCHHHHHHHHHhCCce
Q 021361 191 DLAS--NCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAH-IDEPELVSALLEGRLA 251 (313)
Q Consensus 191 ~l~~--~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~-vd~~al~~al~~g~~~ 251 (313)
+++. +.|+|+.++|...++...--.-....|+.|.-+|....+.+ ...+.|.++.++.+..
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~ 146 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVR 146 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCE
Confidence 8884 68999999986544322111222455666766665433333 2456777777776554
No 309
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=95.85 E-value=0.047 Score=53.11 Aligned_cols=91 Identities=14% Similarity=0.197 Sum_probs=66.1
Q ss_pred ccCCCEEEEEcCC---hhHHHHHHHHHhc-CCcEEEECCCCccc-c---------c--ccccCCHHHHHhhCCeeEEecC
Q 021361 141 KFSGKSVGIVGLG---RIGTAIAKRVEAF-GCPISYHSRSEKSD-A---------N--YKYYTNIIDLASNCQILIVACS 204 (313)
Q Consensus 141 ~l~g~~vgiiG~G---~iG~~~a~~l~~~-g~~V~~~~~~~~~~-~---------~--~~~~~~l~~l~~~aDvv~l~~p 204 (313)
.+.|++|+++|-+ ++.++++..+..+ |++|.+..|..-.. . + +..+.++++.++++|+|....-
T Consensus 238 ~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~~ 317 (429)
T PRK11891 238 IVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATRI 317 (429)
T ss_pred CcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence 4889999999994 8999999998876 99998888754321 0 1 2335789999999999988442
Q ss_pred CC-----hH-----hhhccCHHHHhh-cCCCcEEEEcC
Q 021361 205 LT-----EE-----THHIVNRKVIDA-LGPSGILINIG 231 (313)
Q Consensus 205 ~~-----~~-----t~~~i~~~~l~~-mk~ga~~in~~ 231 (313)
-. +. ....++.+.++. .|++++|..+.
T Consensus 318 q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHcL 355 (429)
T PRK11891 318 QKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHPL 355 (429)
T ss_pred hhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECCC
Confidence 10 10 113457788887 88888888665
No 310
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.85 E-value=0.023 Score=55.47 Aligned_cols=65 Identities=17% Similarity=0.252 Sum_probs=48.0
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc------ccccc-------cCCHHHH-HhhCCeeEEecCCChHh
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD------ANYKY-------YTNIIDL-ASNCQILIVACSLTEET 209 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------~~~~~-------~~~l~~l-~~~aDvv~l~~p~~~~t 209 (313)
++|.|+|+|.+|+.+++.|...|++|.+++++++.. .+... ...++++ +.++|.|+++++....+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~n 79 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDETN 79 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHHH
Confidence 379999999999999999999999999999876431 11111 1234445 67899999999864443
No 311
>PLN02342 ornithine carbamoyltransferase
Probab=95.83 E-value=0.089 Score=49.91 Aligned_cols=90 Identities=13% Similarity=0.139 Sum_probs=65.3
Q ss_pred cCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccc----------c---cccccCCHHHHHhhCCeeEEec----
Q 021361 142 FSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSD----------A---NYKYYTNIIDLASNCQILIVAC---- 203 (313)
Q Consensus 142 l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~----------~---~~~~~~~l~~l~~~aDvv~l~~---- 203 (313)
+.|++|+++|= .++.++++..+..+|++|.+..|..-.. . .+....++++.++++|+|..-.
T Consensus 192 l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s~ 271 (348)
T PLN02342 192 LEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWASM 271 (348)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCcccc
Confidence 78999999997 3578888889999999998888754221 1 1234578999999999998752
Q ss_pred CCChH--------hhhccCHHHHhhcCCCcEEEEcC
Q 021361 204 SLTEE--------THHIVNRKVIDALGPSGILINIG 231 (313)
Q Consensus 204 p~~~~--------t~~~i~~~~l~~mk~ga~~in~~ 231 (313)
-..+. ....++++.++.+|++++|..+.
T Consensus 272 ~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHpL 307 (348)
T PLN02342 272 GQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHCL 307 (348)
T ss_pred ccchhhHHHHHhccCCccCHHHHhccCCCcEEeCCC
Confidence 11111 12456788888888888888775
No 312
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.83 E-value=0.015 Score=55.39 Aligned_cols=37 Identities=16% Similarity=0.312 Sum_probs=32.8
Q ss_pred cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCC
Q 021361 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRS 176 (313)
Q Consensus 140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~ 176 (313)
..|++++|.|||+|.+|..+++.|...|. ++..+|..
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 56899999999999999999999999998 47777754
No 313
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=95.81 E-value=0.031 Score=53.02 Aligned_cols=89 Identities=16% Similarity=0.239 Sum_probs=55.5
Q ss_pred CEEEEEcC-ChhHHHHHHHHHhc-CCcEE-EECCCCccc-cc-----cc-----ccCCHHH-HHhhCCeeEEecCCChHh
Q 021361 145 KSVGIVGL-GRIGTAIAKRVEAF-GCPIS-YHSRSEKSD-AN-----YK-----YYTNIID-LASNCQILIVACSLTEET 209 (313)
Q Consensus 145 ~~vgiiG~-G~iG~~~a~~l~~~-g~~V~-~~~~~~~~~-~~-----~~-----~~~~l~~-l~~~aDvv~l~~p~~~~t 209 (313)
.+|+|+|. |.+|+.+++.|... ++++. +.++..... .. .. .+.++++ ...++|+|++|+|...+.
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~~ 82 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVSM 82 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHHH
Confidence 58999997 99999999999876 67764 455432211 00 11 1223333 456899999999964332
Q ss_pred hhccCHHHHhhcCCCcEEEEcCCCCccCH
Q 021361 210 HHIVNRKVIDALGPSGILINIGRGAHIDE 238 (313)
Q Consensus 210 ~~~i~~~~l~~mk~ga~~in~~rg~~vd~ 238 (313)
. + -. ..++.|..+||.|-.=-.+.
T Consensus 83 ~-~-v~---~a~~aG~~VID~S~~fR~~~ 106 (343)
T PRK00436 83 D-L-AP---QLLEAGVKVIDLSADFRLKD 106 (343)
T ss_pred H-H-HH---HHHhCCCEEEECCcccCCCC
Confidence 2 1 11 22356899999985544433
No 314
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.81 E-value=0.016 Score=54.02 Aligned_cols=60 Identities=17% Similarity=0.252 Sum_probs=45.5
Q ss_pred EEEEEcCChhHHHHHHHHHhcC--CcEEEECCCCccccc-------cc--------ccCCHHHHHhhCCeeEEecCCC
Q 021361 146 SVGIVGLGRIGTAIAKRVEAFG--CPISYHSRSEKSDAN-------YK--------YYTNIIDLASNCQILIVACSLT 206 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~g--~~V~~~~~~~~~~~~-------~~--------~~~~l~~l~~~aDvv~l~~p~~ 206 (313)
+|+|||.|.+|..+|..|...| .+|..+|+......+ .. ...+. +.+++||+|+++.+..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~ 78 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGAN 78 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCC
Confidence 7999999999999999999888 479999987643211 00 01233 5588999999999863
No 315
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.77 E-value=0.022 Score=56.72 Aligned_cols=109 Identities=16% Similarity=0.156 Sum_probs=67.8
Q ss_pred cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-------c--ccccc--CCHHHHHhhCCeeEEec--CCC--
Q 021361 142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-------A--NYKYY--TNIIDLASNCQILIVAC--SLT-- 206 (313)
Q Consensus 142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-------~--~~~~~--~~l~~l~~~aDvv~l~~--p~~-- 206 (313)
+.+++|.|+|+|..|.++|+.|+..|++|.++|...... . +.... ....+.+.++|+|+..- |.+
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~~ 84 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLEA 84 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCccc
Confidence 568999999999999999999999999999999654221 0 11111 12344566899998863 322
Q ss_pred ---hHh-------hhccCH-HHHh-hc--------CCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 021361 207 ---EET-------HHIVNR-KVID-AL--------GPSGILINIGRGAHIDEPELVSALLEGRL 250 (313)
Q Consensus 207 ---~~t-------~~~i~~-~~l~-~m--------k~ga~~in~~rg~~vd~~al~~al~~g~~ 250 (313)
|.. ..++.+ +.+. .+ ++-.+-|--+-|+---..-+...|++...
T Consensus 85 ~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~ 148 (498)
T PRK02006 85 ALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGK 148 (498)
T ss_pred ccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCC
Confidence 211 122322 2221 12 12244555557888777778888876443
No 316
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=95.77 E-value=0.034 Score=52.47 Aligned_cols=90 Identities=16% Similarity=0.224 Sum_probs=64.9
Q ss_pred cCCCEEEEEcCC--hhHHHHHHHHHhcCCcEEEECCCCccc--------------cc--ccccCCHHHHHhhCCeeEEec
Q 021361 142 FSGKSVGIVGLG--RIGTAIAKRVEAFGCPISYHSRSEKSD--------------AN--YKYYTNIIDLASNCQILIVAC 203 (313)
Q Consensus 142 l~g~~vgiiG~G--~iG~~~a~~l~~~g~~V~~~~~~~~~~--------------~~--~~~~~~l~~l~~~aDvv~l~~ 203 (313)
+.|++|++||-+ ++.++++..+..+|++|.+..|..-.. .+ .....++++.++++|+|..-.
T Consensus 153 l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~ 232 (332)
T PRK04284 153 YKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTDV 232 (332)
T ss_pred cCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEECC
Confidence 779999999975 889999999999999999888753211 11 234578999999999998742
Q ss_pred CC--------ChH-----hhhccCHHHHhhcC-CCcEEEEcC
Q 021361 204 SL--------TEE-----THHIVNRKVIDALG-PSGILINIG 231 (313)
Q Consensus 204 p~--------~~~-----t~~~i~~~~l~~mk-~ga~~in~~ 231 (313)
=. .++ ....++++.++.++ |+++|..+.
T Consensus 233 w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHpl 274 (332)
T PRK04284 233 WVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCL 274 (332)
T ss_pred cccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECCC
Confidence 00 001 12345778888885 588888775
No 317
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.76 E-value=0.026 Score=53.38 Aligned_cols=37 Identities=32% Similarity=0.442 Sum_probs=33.7
Q ss_pred cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCC
Q 021361 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRS 176 (313)
Q Consensus 140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~ 176 (313)
..|+.++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46899999999999999999999999999 68888865
No 318
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=95.75 E-value=0.016 Score=49.04 Aligned_cols=62 Identities=18% Similarity=0.210 Sum_probs=48.0
Q ss_pred EEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcccc---ccc-------ccCCHHHHHhhCCeeEEecCCChH
Q 021361 147 VGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDA---NYK-------YYTNIIDLASNCQILIVACSLTEE 208 (313)
Q Consensus 147 vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~---~~~-------~~~~l~~l~~~aDvv~l~~p~~~~ 208 (313)
|.|+|. |.+|+.+++.|...|++|++..|++.+.. +.+ ...++.+.++.+|.|+.+++.+..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~ 73 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK 73 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc
Confidence 678995 99999999999999999999999876432 111 123567788899999999975433
No 319
>PRK11579 putative oxidoreductase; Provisional
Probab=95.75 E-value=0.02 Score=54.10 Aligned_cols=64 Identities=14% Similarity=0.219 Sum_probs=46.3
Q ss_pred CEEEEEcCChhHHH-HHHHHHhc-CCcEE-EECCCCcccc----cccccCCHHHHHh--hCCeeEEecCCChH
Q 021361 145 KSVGIVGLGRIGTA-IAKRVEAF-GCPIS-YHSRSEKSDA----NYKYYTNIIDLAS--NCQILIVACSLTEE 208 (313)
Q Consensus 145 ~~vgiiG~G~iG~~-~a~~l~~~-g~~V~-~~~~~~~~~~----~~~~~~~l~~l~~--~aDvv~l~~p~~~~ 208 (313)
-+|||||+|.||+. .+..++.. ++++. ++|+..+... +...+.+++++++ +.|+|++++|...+
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H 77 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTH 77 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHH
Confidence 38999999999985 56666543 67865 5777654321 2345689999996 57999999997544
No 320
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=95.75 E-value=0.033 Score=46.25 Aligned_cols=84 Identities=15% Similarity=0.241 Sum_probs=56.2
Q ss_pred cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccccccc---ccCCHHHHHhhCCeeEEecCCChHhhhccC---H
Q 021361 142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANYK---YYTNIIDLASNCQILIVACSLTEETHHIVN---R 215 (313)
Q Consensus 142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~---~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~---~ 215 (313)
..|++|++||+= +.+++.++..+.++.++|+.++...... .....++++++||+|++.- .| ++| .
T Consensus 9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTG----sT--lvN~Ti~ 79 (147)
T PF04016_consen 9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITG----ST--LVNGTID 79 (147)
T ss_dssp TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEEC----HH--CCTTTHH
T ss_pred cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEe----ee--eecCCHH
Confidence 468999999961 2277888888899999999885432211 2346788999999999854 22 243 3
Q ss_pred HHHhhcCCCcEEEEcCCCC
Q 021361 216 KVIDALGPSGILINIGRGA 234 (313)
Q Consensus 216 ~~l~~mk~ga~~in~~rg~ 234 (313)
..|++.+++..++=+|-..
T Consensus 80 ~iL~~~~~~~~vil~GpS~ 98 (147)
T PF04016_consen 80 DILELARNAREVILYGPSA 98 (147)
T ss_dssp HHHHHTTTSSEEEEESCCG
T ss_pred HHHHhCccCCeEEEEecCc
Confidence 4677777777777776443
No 321
>PRK07411 hypothetical protein; Validated
Probab=95.75 E-value=0.025 Score=54.64 Aligned_cols=83 Identities=17% Similarity=0.182 Sum_probs=57.6
Q ss_pred cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcc-------------ccc-----------------cc----
Q 021361 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKS-------------DAN-----------------YK---- 184 (313)
Q Consensus 140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~-------------~~~-----------------~~---- 184 (313)
..|+..+|+|||+|.+|..+++.|...|. ++..+|...-. ..+ .+
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~ 113 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY 113 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence 46899999999999999999999999998 47777753210 000 00
Q ss_pred --c--cCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCC
Q 021361 185 --Y--YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGP 223 (313)
Q Consensus 185 --~--~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ 223 (313)
. ..+..++++++|+|+.|+ .+.+++.++++...+.-+|
T Consensus 114 ~~~~~~~~~~~~~~~~D~Vvd~~-d~~~~r~~ln~~~~~~~~p 155 (390)
T PRK07411 114 ETRLSSENALDILAPYDVVVDGT-DNFPTRYLVNDACVLLNKP 155 (390)
T ss_pred ecccCHHhHHHHHhCCCEEEECC-CCHHHHHHHHHHHHHcCCC
Confidence 0 123456888999887766 4667788887665554443
No 322
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=95.74 E-value=0.035 Score=52.40 Aligned_cols=91 Identities=10% Similarity=0.126 Sum_probs=63.7
Q ss_pred ccCCCEEEEEcCC--hhHHHHHHHHHhcCCcEEEECCCCccc--------------cc--ccccCCHHHHHhhCCeeEEe
Q 021361 141 KFSGKSVGIVGLG--RIGTAIAKRVEAFGCPISYHSRSEKSD--------------AN--YKYYTNIIDLASNCQILIVA 202 (313)
Q Consensus 141 ~l~g~~vgiiG~G--~iG~~~a~~l~~~g~~V~~~~~~~~~~--------------~~--~~~~~~l~~l~~~aDvv~l~ 202 (313)
.+.|++|++||-+ ++.++++..+..+|+++.++.|..-.. .+ .....++++.++++|+|..-
T Consensus 153 ~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd 232 (336)
T PRK03515 153 AFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD 232 (336)
T ss_pred CcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 4789999999976 689999999999999998888754211 11 23457899999999999874
Q ss_pred cCCC--------h-----HhhhccCHHHHhhc-CCCcEEEEcC
Q 021361 203 CSLT--------E-----ETHHIVNRKVIDAL-GPSGILINIG 231 (313)
Q Consensus 203 ~p~~--------~-----~t~~~i~~~~l~~m-k~ga~~in~~ 231 (313)
.=.. + .....++++.++.. |++++|..+.
T Consensus 233 ~W~sm~~~~~~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHcL 275 (336)
T PRK03515 233 VWVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHCL 275 (336)
T ss_pred CcccCcchhHHHHHHHHhccCCccCHHHHhcccCCCCEEECCC
Confidence 2000 0 01234566677764 6777777765
No 323
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.72 E-value=0.016 Score=57.53 Aligned_cols=106 Identities=13% Similarity=0.217 Sum_probs=68.0
Q ss_pred cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----cccccc--CCHHHHHhhCCeeEEecCCChHhh----
Q 021361 142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYY--TNIIDLASNCQILIVACSLTEETH---- 210 (313)
Q Consensus 142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~--~~l~~l~~~aDvv~l~~p~~~~t~---- 210 (313)
+.|++|.|+|+|.+|.+.++.|+..|++|.++|+..... .+.... ....+.++++|+|+.+-...+...
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~ 89 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAA 89 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHH
Confidence 478999999999999999999999999999999654321 122221 123455678998888654333211
Q ss_pred ------hccCHHHHh-hc-------CC-CcEEEEcCCCCccCHHHHHHHHHh
Q 021361 211 ------HIVNRKVID-AL-------GP-SGILINIGRGAHIDEPELVSALLE 247 (313)
Q Consensus 211 ------~~i~~~~l~-~m-------k~-ga~~in~~rg~~vd~~al~~al~~ 247 (313)
.++++-.|. .+ ++ ..+-|--+-|+.-..+-+...|+.
T Consensus 90 a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~ 141 (488)
T PRK03369 90 AAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIA 141 (488)
T ss_pred HHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 123322221 11 12 234455557888888878888875
No 324
>PRK12861 malic enzyme; Reviewed
Probab=95.70 E-value=0.33 Score=50.59 Aligned_cols=178 Identities=10% Similarity=0.105 Sum_probs=116.8
Q ss_pred CcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCC-
Q 021361 90 AVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGC- 168 (313)
Q Consensus 90 gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~- 168 (313)
.|++.|. +.++ +|=.+++-+++.+|- .|+.|...+|.|.|.|.-|-.+++.+...|.
T Consensus 157 ~ipvf~D-D~qG--Ta~v~lA~llnal~~-------------------~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~ 214 (764)
T PRK12861 157 KIPVFHD-DQHG--TAITVSAAFINGLKV-------------------VGKSIKEVKVVTSGAGAAALACLDLLVDLGLP 214 (764)
T ss_pred CCCeecc-ccch--HHHHHHHHHHHHHHH-------------------hCCChhHcEEEEECHhHHHHHHHHHHHHcCCC
Confidence 7999998 4444 666788888887763 2567889999999999999999999999998
Q ss_pred --cEEEECCCCc-----cc--cc-----c--cccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCC
Q 021361 169 --PISYHSRSEK-----SD--AN-----Y--KYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGR 232 (313)
Q Consensus 169 --~V~~~~~~~~-----~~--~~-----~--~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~r 232 (313)
+++.+|+..- .. .. + ....++.|+++.+|+++= +. ..+.+.++.++.|.+..++.=.|.
T Consensus 215 ~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~~~~L~eai~~advliG-~S----~~g~ft~e~v~~Ma~~PIIFaLsN 289 (764)
T PRK12861 215 VENIWVTDIEGVVYRGRTTLMDPDKERFAQETDARTLAEVIGGADVFLG-LS----AGGVLKAEMLKAMAARPLILALAN 289 (764)
T ss_pred hhhEEEEcCCCeeeCCCcccCCHHHHHHHhhcCCCCHHHHHhcCCEEEE-cC----CCCCCCHHHHHHhccCCEEEECCC
Confidence 6888886431 00 00 0 123589999999997654 32 257999999999999999999887
Q ss_pred CCcc-CHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHH-----HHHHHHHHHHHHHHHHHc
Q 021361 233 GAHI-DEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEE-----TSKAMADLVIENLVAHFS 304 (313)
Q Consensus 233 g~~v-d~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~-----~~~~~~~~~~~ni~~~~~ 304 (313)
...- ..+..++ ..|+.. .+. ... ..--+..|+++=|=++=..-. -.+.|.-.+++-|-.+..
T Consensus 290 PtpE~~pe~a~~--~~g~ai-vaT----Grs---~~pnQ~NN~l~FPgi~~Gal~~~a~~I~~~M~~aAa~alA~~~~ 357 (764)
T PRK12861 290 PTPEIFPELAHA--TRDDVV-IAT----GRS---DYPNQVNNVLCFPYIFRGALDVGATTITREMEIAAVHAIAGLAE 357 (764)
T ss_pred CCccCCHHHHHh--cCCCEE-EEe----CCc---CCCCccceeeecchhhHHHHHcCCccCCHHHHHHHHHHHHhhCC
Confidence 6641 2222222 334422 222 111 123456789999977632222 124455455555544443
No 325
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.70 E-value=0.016 Score=53.52 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=33.7
Q ss_pred cCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcc
Q 021361 142 FSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKS 179 (313)
Q Consensus 142 l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~ 179 (313)
+.||++.|+|.|..|++++-.|...|+ +|++++|+.++
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~k 163 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSR 163 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHH
Confidence 558999999999999999999999998 58999998653
No 326
>PLN02602 lactate dehydrogenase
Probab=95.68 E-value=0.046 Score=51.94 Aligned_cols=86 Identities=19% Similarity=0.335 Sum_probs=56.8
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCccccc--------------cccc--CCHHHHHhhCCeeEEecCCC
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSDAN--------------YKYY--TNIIDLASNCQILIVACSLT 206 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~--------------~~~~--~~l~~l~~~aDvv~l~~p~~ 206 (313)
++|+|||.|.+|..+|-.|...|. ++..+|...+...+ .... .+.+ .+++||+|+++.-..
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~-~~~daDiVVitAG~~ 116 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYA-VTAGSDLCIVTAGAR 116 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHH-HhCCCCEEEECCCCC
Confidence 699999999999999999986665 68889986643211 1111 2344 489999999986432
Q ss_pred h---Hhh-hccC---------HHHHhhcCCCcEEEEcC
Q 021361 207 E---ETH-HIVN---------RKVIDALGPSGILINIG 231 (313)
Q Consensus 207 ~---~t~-~~i~---------~~~l~~mk~ga~~in~~ 231 (313)
. .++ .++. .+.+....|++++|+++
T Consensus 117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 1 122 1221 12344456789999987
No 327
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.67 E-value=0.081 Score=51.66 Aligned_cols=107 Identities=17% Similarity=0.232 Sum_probs=68.6
Q ss_pred cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc---------cccccc--CCHHHHHhh-CCeeEEecCCC---
Q 021361 142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD---------ANYKYY--TNIIDLASN-CQILIVACSLT--- 206 (313)
Q Consensus 142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~---------~~~~~~--~~l~~l~~~-aDvv~l~~p~~--- 206 (313)
++||++.|+|.|.+|.++|+.|...|++|.++|+..... .+.... ....+++.+ +|+|+......
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~~ 82 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYTN 82 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCCC
Confidence 679999999999999999999999999999999754221 122211 233445554 89888755222
Q ss_pred hHh-------hhccCHH-HHhhc-CCCcEEEEcCCCCccCHHHHHHHHHhC
Q 021361 207 EET-------HHIVNRK-VIDAL-GPSGILINIGRGAHIDEPELVSALLEG 248 (313)
Q Consensus 207 ~~t-------~~~i~~~-~l~~m-k~ga~~in~~rg~~vd~~al~~al~~g 248 (313)
+.. ..++.+. ++..+ +...+-|--+.|+..-.+-+...|+..
T Consensus 83 ~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~ 133 (447)
T PRK02472 83 PMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAG 133 (447)
T ss_pred HHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHC
Confidence 211 1233333 22333 333455666678888888888888753
No 328
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.66 E-value=0.0079 Score=49.58 Aligned_cols=91 Identities=18% Similarity=0.345 Sum_probs=58.5
Q ss_pred EEEEEcC-ChhHHHHHHHHHhcCC--cEEEECCCCccccc---------------ccccCCHHHHHhhCCeeEEecCC--
Q 021361 146 SVGIVGL-GRIGTAIAKRVEAFGC--PISYHSRSEKSDAN---------------YKYYTNIIDLASNCQILIVACSL-- 205 (313)
Q Consensus 146 ~vgiiG~-G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~---------------~~~~~~l~~l~~~aDvv~l~~p~-- 205 (313)
||+|||. |.+|..+|-.|...+. ++..+|+......+ .....+..+.+++||+|+++.-.
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~~ 81 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVPR 81 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTSS
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEeccccc
Confidence 7999999 9999999999986554 79999988543211 11123567778899999998743
Q ss_pred ChH-hh-hccC---------HHHHhhcCCCcEEEEcCCCCccCH
Q 021361 206 TEE-TH-HIVN---------RKVIDALGPSGILINIGRGAHIDE 238 (313)
Q Consensus 206 ~~~-t~-~~i~---------~~~l~~mk~ga~~in~~rg~~vd~ 238 (313)
.+. ++ .++. .+.+....|+++++.+ +.++|.
T Consensus 82 ~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivv--tNPvd~ 123 (141)
T PF00056_consen 82 KPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVV--TNPVDV 123 (141)
T ss_dssp STTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE---SSSHHH
T ss_pred cccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEe--CCcHHH
Confidence 221 11 1111 1233445578888888 444553
No 329
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.61 E-value=0.028 Score=44.06 Aligned_cols=81 Identities=22% Similarity=0.293 Sum_probs=52.2
Q ss_pred EEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccc----cCCHHHH----HhhCCeeEEecCCChHhhhcc
Q 021361 147 VGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKY----YTNIIDL----ASNCQILIVACSLTEETHHIV 213 (313)
Q Consensus 147 vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~----~~~l~~l----~~~aDvv~l~~p~~~~t~~~i 213 (313)
|-|+|+|.+|+.+++.|+..+.+|.+.++.++.. .+... ..+.+.+ ++++|.++++.+.... ++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~--n~~ 78 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEE--NLL 78 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHH--HHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHH--HHH
Confidence 5699999999999999999777899999876432 12111 1233332 5689999998875433 333
Q ss_pred CHHHHhhcCCCcEEEE
Q 021361 214 NRKVIDALGPSGILIN 229 (313)
Q Consensus 214 ~~~~l~~mk~ga~~in 229 (313)
-...++.+-+...++-
T Consensus 79 ~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 79 IALLARELNPDIRIIA 94 (116)
T ss_dssp HHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHCCCCeEEE
Confidence 3445555555555543
No 330
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=95.60 E-value=0.032 Score=55.99 Aligned_cols=38 Identities=24% Similarity=0.396 Sum_probs=34.8
Q ss_pred ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361 141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK 178 (313)
Q Consensus 141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~ 178 (313)
.+.+|++.|+|.|.+|++++..|...|++|++++|+.+
T Consensus 376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e 413 (529)
T PLN02520 376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYE 413 (529)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 57899999999999999999999999999999998754
No 331
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.59 E-value=0.042 Score=50.44 Aligned_cols=62 Identities=23% Similarity=0.309 Sum_probs=42.8
Q ss_pred CCEEEEEcCChhHHHHHHHHHhcCCc-EEEECCCCcccccc-c-ccCCHH-HH-HhhCCeeEEecCC
Q 021361 144 GKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRSEKSDANY-K-YYTNII-DL-ASNCQILIVACSL 205 (313)
Q Consensus 144 g~~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~~~~~~~~-~-~~~~l~-~l-~~~aDvv~l~~p~ 205 (313)
++++.|+|.|..+++++-.|...|+. |++++|+.++.... . ...+.. ++ ...+|+|+.++|.
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~~~~~~dlvINaTp~ 188 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDLGGIEADILVNVTPI 188 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhcccccCCEEEECCcc
Confidence 46899999999999999999999985 99999987543211 0 001111 11 1347777777774
No 332
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.58 E-value=0.013 Score=56.21 Aligned_cols=60 Identities=20% Similarity=0.403 Sum_probs=43.0
Q ss_pred EEEEcCChhHHHHHHHHHhcC-C-cEEEECCCCcccc---------ccc-------ccCCHHHHHhhCCeeEEecCCC
Q 021361 147 VGIVGLGRIGTAIAKRVEAFG-C-PISYHSRSEKSDA---------NYK-------YYTNIIDLASNCQILIVACSLT 206 (313)
Q Consensus 147 vgiiG~G~iG~~~a~~l~~~g-~-~V~~~~~~~~~~~---------~~~-------~~~~l~~l~~~aDvv~l~~p~~ 206 (313)
|+|+|.|.+|+.+++.|...+ . +|.+.+|+.++.. ... ...+++++++++|+|+.|+|..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~ 78 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF 78 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence 789999999999999998766 4 7999999876410 111 1134778899999999999753
No 333
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.53 E-value=0.023 Score=56.16 Aligned_cols=109 Identities=14% Similarity=0.199 Sum_probs=69.1
Q ss_pred ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc------cccccc--CCHHHHHhhCCeeEEecC---CChHh
Q 021361 141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD------ANYKYY--TNIIDLASNCQILIVACS---LTEET 209 (313)
Q Consensus 141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------~~~~~~--~~l~~l~~~aDvv~l~~p---~~~~t 209 (313)
.+.+++|.|+|+|..|+++|+.|...|++|.++|+..... .+.... ....+.+.++|+|+.+-. .++..
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~ 91 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLL 91 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHH
Confidence 5789999999999999999999999999999999754321 122221 122345668898887532 22322
Q ss_pred h-------hccCHHHHhh-------c-CC-CcEEEEcCCCCccCHHHHHHHHHhCC
Q 021361 210 H-------HIVNRKVIDA-------L-GP-SGILINIGRGAHIDEPELVSALLEGR 249 (313)
Q Consensus 210 ~-------~~i~~~~l~~-------m-k~-ga~~in~~rg~~vd~~al~~al~~g~ 249 (313)
. .++.+-.+.. + ++ ..+-|--+-|+..-.+-+...|+...
T Consensus 92 ~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g 147 (473)
T PRK00141 92 VDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGG 147 (473)
T ss_pred HHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence 1 1233323321 1 12 24455555788888888888887643
No 334
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=95.51 E-value=0.041 Score=55.85 Aligned_cols=62 Identities=21% Similarity=0.409 Sum_probs=43.9
Q ss_pred cHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCCc-EEEECC
Q 021361 101 TDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSR 175 (313)
Q Consensus 101 ~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~ 175 (313)
....||.++-|=|-++| |.--+..--..|++.+|.|+|.|.+|..+|+.|.+.|.. +..+|.
T Consensus 308 P~~la~~avdlnlkLmk-------------WRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~ 370 (664)
T TIGR01381 308 PKRLAERSVDLNLKLMK-------------WRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDN 370 (664)
T ss_pred HHHHHHHHHHHHHHHHh-------------hhcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcC
Confidence 45667776666555443 541111012578999999999999999999999999984 777663
No 335
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=95.48 E-value=0.039 Score=55.95 Aligned_cols=65 Identities=20% Similarity=0.420 Sum_probs=49.0
Q ss_pred cccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccccc--c--c---ccCC---HHHHHhhCCeeEEecC
Q 021361 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDAN--Y--K---YYTN---IIDLASNCQILIVACS 204 (313)
Q Consensus 140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~--~--~---~~~~---l~~l~~~aDvv~l~~p 204 (313)
..+..|+|||||.|..|+.+++.++.+|++|.++|+.+..... + . .+.+ +.++++++|+|.....
T Consensus 18 ~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e 92 (577)
T PLN02948 18 HGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIE 92 (577)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecC
Confidence 3578999999999999999999999999999999987653211 0 0 1233 5566788999876544
No 336
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=95.48 E-value=0.049 Score=51.41 Aligned_cols=92 Identities=11% Similarity=0.105 Sum_probs=66.2
Q ss_pred ccCCCEEEEEcCC--hhHHHHHHHHHhcCCcEEEECCCCccc--------------cc--ccccCCHHHHHhhCCeeEEe
Q 021361 141 KFSGKSVGIVGLG--RIGTAIAKRVEAFGCPISYHSRSEKSD--------------AN--YKYYTNIIDLASNCQILIVA 202 (313)
Q Consensus 141 ~l~g~~vgiiG~G--~iG~~~a~~l~~~g~~V~~~~~~~~~~--------------~~--~~~~~~l~~l~~~aDvv~l~ 202 (313)
.+.|++|+++|-+ ++.++++..+..+|++|.+..|..-.. .+ .....++++.++++|+|..-
T Consensus 153 ~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~ 232 (334)
T PRK12562 153 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTD 232 (334)
T ss_pred CcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 4789999999986 789999999999999998888754111 01 22357899999999999874
Q ss_pred c------CCC--hH-----hhhccCHHHHhhc-CCCcEEEEcCC
Q 021361 203 C------SLT--EE-----THHIVNRKVIDAL-GPSGILINIGR 232 (313)
Q Consensus 203 ~------p~~--~~-----t~~~i~~~~l~~m-k~ga~~in~~r 232 (313)
. ... ++ ...-++.+.++.. |++++|..+.-
T Consensus 233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcLP 276 (334)
T PRK12562 233 VWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCLP 276 (334)
T ss_pred CccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCCC
Confidence 3 100 01 1234577888875 78888888753
No 337
>PRK13529 malate dehydrogenase; Provisional
Probab=95.44 E-value=0.95 Score=45.46 Aligned_cols=211 Identities=15% Similarity=0.200 Sum_probs=135.6
Q ss_pred cCCCceEEEEcCCCCCc-CChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCccccccc
Q 021361 64 SLPTLEIVASYSVGLDK-IDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKF 142 (313)
Q Consensus 64 ~~~~Lk~i~~~~~G~d~-id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l 142 (313)
.+|+. +|+.-=-+..+ +.+..-.+..|++.|..- .+ +|-.+++-+++..|- .|+.|
T Consensus 237 ~~P~~-~I~~EDf~~~~af~iL~ryr~~i~~FnDDi-QG--TaaV~LAgll~A~r~-------------------~g~~l 293 (563)
T PRK13529 237 RFPNA-LLQFEDFAQKNARRILERYRDEICTFNDDI-QG--TGAVTLAGLLAALKI-------------------TGEPL 293 (563)
T ss_pred hCCCe-EEehhhcCCchHHHHHHHhccCCCeecccc-ch--HHHHHHHHHHHHHHH-------------------hCCCh
Confidence 35665 66665444443 344333455799999843 33 677788888888773 24568
Q ss_pred CCCEEEEEcCChhHHHHHHHHHh----cCC-------cEEEECCCCc----c-cc-c-----cc------------ccCC
Q 021361 143 SGKSVGIVGLGRIGTAIAKRVEA----FGC-------PISYHSRSEK----S-DA-N-----YK------------YYTN 188 (313)
Q Consensus 143 ~g~~vgiiG~G~iG~~~a~~l~~----~g~-------~V~~~~~~~~----~-~~-~-----~~------------~~~~ 188 (313)
...+|.|+|.|..|-.+|+.+.. .|. +++.+|+..- . .. . ++ ...+
T Consensus 294 ~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~ 373 (563)
T PRK13529 294 SDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVIS 373 (563)
T ss_pred hhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCC
Confidence 89999999999999999999886 587 6888887531 0 00 0 00 1147
Q ss_pred HHHHHhhC--CeeEEecCCChHhhhccCHHHHhhcCC---CcEEEEcCCCCccCHHHHHHHHH--hCCceEEEccCCCCC
Q 021361 189 IIDLASNC--QILIVACSLTEETHHIVNRKVIDALGP---SGILINIGRGAHIDEPELVSALL--EGRLAGAGLDVYENE 261 (313)
Q Consensus 189 l~~l~~~a--Dvv~l~~p~~~~t~~~i~~~~l~~mk~---ga~~in~~rg~~vd~~al~~al~--~g~~~ga~lDV~~~E 261 (313)
+.|+++.. |+++=+. ..-+.+.++.++.|.+ ..++.=.|......|-.-.++.+ +|+...| ..-
T Consensus 374 L~e~v~~~kPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~A-----tGs 444 (563)
T PRK13529 374 LLEVVRNVKPTVLIGVS----GQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVA-----TGS 444 (563)
T ss_pred HHHHHhccCCCEEEEec----CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEE-----ECC
Confidence 89999987 8776533 2246899999999977 88999998877755544455554 4654433 122
Q ss_pred CCCC-------cccCCCCcEEEcCCCCCCcHH-----HHHHHHHHHHHHHHHHHcCC
Q 021361 262 PEVP-------EQMLGLNNVVLLPHVGSDTEE-----TSKAMADLVIENLVAHFSNK 306 (313)
Q Consensus 262 P~~~-------~~l~~~pnvi~TPHia~~t~~-----~~~~~~~~~~~ni~~~~~g~ 306 (313)
|.++ ...-+..|+++=|=++-..-. -.+.|...+++-|-.+..-+
T Consensus 445 pf~pv~~~G~~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~aAA~alA~~v~~~ 501 (563)
T PRK13529 445 PFAPVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLMAAAHALADCVPLA 501 (563)
T ss_pred CCCCeeeCCeEeccCcCcceeecccchhhhhhcCCcCCCHHHHHHHHHHHHhhCccc
Confidence 2221 124466789999977633222 12556666666665555443
No 338
>PRK07877 hypothetical protein; Provisional
Probab=95.44 E-value=0.075 Score=55.10 Aligned_cols=94 Identities=16% Similarity=0.288 Sum_probs=62.7
Q ss_pred cccCCCEEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCcc------------ccc-----------------c--cc-
Q 021361 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKS------------DAN-----------------Y--KY- 185 (313)
Q Consensus 140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~------------~~~-----------------~--~~- 185 (313)
..|++++|+|+|+| +|..+|..|...|. ++..+|...-. ..+ . ..
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~ 181 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVF 181 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEE
Confidence 46899999999999 99999999998884 67776643210 000 0 00
Q ss_pred -----cCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccC
Q 021361 186 -----YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHID 237 (313)
Q Consensus 186 -----~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd 237 (313)
..+++++++++|+|+-|+- +-+++.++++...++=+ .++.-.+-++.+|
T Consensus 182 ~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~~i--P~i~~~~~~g~~~ 235 (722)
T PRK07877 182 TDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARARRI--PVLMATSDRGLLD 235 (722)
T ss_pred eccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHcCC--CEEEEcCCCCCcC
Confidence 1368888999998888774 66888888876555322 2333344334444
No 339
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=95.36 E-value=0.042 Score=53.07 Aligned_cols=37 Identities=16% Similarity=0.299 Sum_probs=32.7
Q ss_pred cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCC
Q 021361 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRS 176 (313)
Q Consensus 140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~ 176 (313)
..|++.+|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D 75 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD 75 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 46899999999999999999999999998 47777754
No 340
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.35 E-value=0.034 Score=54.91 Aligned_cols=106 Identities=12% Similarity=0.151 Sum_probs=68.0
Q ss_pred cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc--------cccc--cCCHHHHHhhCCeeEEecCCChH---
Q 021361 142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA--------NYKY--YTNIIDLASNCQILIVACSLTEE--- 208 (313)
Q Consensus 142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~--------~~~~--~~~l~~l~~~aDvv~l~~p~~~~--- 208 (313)
++||+|+|+|+|.-|.+.|+.|...|++|.++|....... +... .....+.+.++|+|+..-...+.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~ 85 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE 85 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence 5689999999999999999999999999999995432110 1011 11123456789988875433222
Q ss_pred h-------hhccCHHH--Hhh-cC-----CCcEEEEcCCCCccCHHHHHHHHHh
Q 021361 209 T-------HHIVNRKV--IDA-LG-----PSGILINIGRGAHIDEPELVSALLE 247 (313)
Q Consensus 209 t-------~~~i~~~~--l~~-mk-----~ga~~in~~rg~~vd~~al~~al~~ 247 (313)
. ..++++-. +.. ++ ...+-|--+.|+.-...-+...|+.
T Consensus 86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~ 139 (468)
T PRK04690 86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRA 139 (468)
T ss_pred HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 1 12344333 233 32 1345566667888888888888875
No 341
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=95.34 E-value=0.059 Score=41.21 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=44.3
Q ss_pred CCEEEEEcCChhHHHHHHHH-HhcCCcE-EEECCCCccc----ccccccCCHHHHHhh--CCeeEEecCC
Q 021361 144 GKSVGIVGLGRIGTAIAKRV-EAFGCPI-SYHSRSEKSD----ANYKYYTNIIDLASN--CQILIVACSL 205 (313)
Q Consensus 144 g~~vgiiG~G~iG~~~a~~l-~~~g~~V-~~~~~~~~~~----~~~~~~~~l~~l~~~--aDvv~l~~p~ 205 (313)
..++.|+|.|+.|++++... ...|+++ .++|..++.. .+...+.+++++.+. .|+-++++|.
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP~ 72 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVPA 72 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES-H
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcCH
Confidence 35899999999999987544 4667764 4566655432 334455688888887 9999999984
No 342
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=95.31 E-value=0.13 Score=47.54 Aligned_cols=104 Identities=14% Similarity=0.177 Sum_probs=71.4
Q ss_pred CCEEEEEcC-ChhHHHHHHHHHhcCCc-EEEECCC--CcccccccccCCHHHHHhh--CCeeEEecCCChHhhhccCHHH
Q 021361 144 GKSVGIVGL-GRIGTAIAKRVEAFGCP-ISYHSRS--EKSDANYKYYTNIIDLASN--CQILIVACSLTEETHHIVNRKV 217 (313)
Q Consensus 144 g~~vgiiG~-G~iG~~~a~~l~~~g~~-V~~~~~~--~~~~~~~~~~~~l~~l~~~--aDvv~l~~p~~~~t~~~i~~~~ 217 (313)
..+|.|.|. |.+|..+.+.|..+|+. ++.++|. .....+...+.+++++... .|+.++++|. +.+...+.+ .
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~~v~G~~~y~sv~dlp~~~~~DlAvi~vp~-~~v~~~l~e-~ 85 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAVEATGANASVIYVPP-PFAADAILE-A 85 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCCeEeCeeccCCHHHHhhccCCCEEEEEcCH-HHHHHHHHH-H
Confidence 347899998 77999999999999986 3456776 4555677778899999987 8999999994 333434332 2
Q ss_pred HhhcC-CCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361 218 IDALG-PSGILINIGRGAHIDEPELVSALLEGRLA 251 (313)
Q Consensus 218 l~~mk-~ga~~in~~rg~~vd~~al~~al~~g~~~ 251 (313)
.+ .. +.++++.-+-+ +-+++.|.+..++..+.
T Consensus 86 ~~-~gvk~avI~s~Gf~-~~~~~~l~~~a~~~gir 118 (291)
T PRK05678 86 ID-AGIDLIVCITEGIP-VLDMLEVKAYLERKKTR 118 (291)
T ss_pred HH-CCCCEEEEECCCCC-HHHHHHHHHHHHHcCCE
Confidence 22 22 23444444332 33344888888887765
No 343
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=95.31 E-value=0.073 Score=49.35 Aligned_cols=30 Identities=20% Similarity=0.520 Sum_probs=26.2
Q ss_pred EEEEEcCChhHHHHHHHHHhcCC-cEEEECC
Q 021361 146 SVGIVGLGRIGTAIAKRVEAFGC-PISYHSR 175 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~ 175 (313)
+|.|+|.|.+|..+|+.|...|. ++..+|.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~ 31 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDS 31 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 58999999999999999999998 4776663
No 344
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=95.30 E-value=0.1 Score=48.80 Aligned_cols=62 Identities=10% Similarity=0.210 Sum_probs=49.2
Q ss_pred ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccc------------cc-ccccCCHHHHHhhCCeeEEe
Q 021361 141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSD------------AN-YKYYTNIIDLASNCQILIVA 202 (313)
Q Consensus 141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~------------~~-~~~~~~l~~l~~~aDvv~l~ 202 (313)
.+.|++|++||- +++.++++..+..+|++|.+..|..-.. .+ .....++++.++++|+|..-
T Consensus 150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d 225 (311)
T PRK14804 150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTD 225 (311)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEee
Confidence 478999999997 6899999999999999999888754210 01 22357899999999999883
No 345
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.27 E-value=0.052 Score=52.85 Aligned_cols=68 Identities=9% Similarity=0.088 Sum_probs=53.5
Q ss_pred ccccCCCEEEEEcC----------ChhHHHHHHHHHhcC-CcEEEECCCCcccc----cccccCCHHHHHhhCCeeEEec
Q 021361 139 GSKFSGKSVGIVGL----------GRIGTAIAKRVEAFG-CPISYHSRSEKSDA----NYKYYTNIIDLASNCQILIVAC 203 (313)
Q Consensus 139 ~~~l~g~~vgiiG~----------G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~----~~~~~~~l~~l~~~aDvv~l~~ 203 (313)
+..++|++|+|+|+ .+-+..+++.|+..| .+|.+|||...... ......++++.++.||+|++++
T Consensus 315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t 394 (415)
T PRK11064 315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLV 394 (415)
T ss_pred ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECC
Confidence 45578999999998 457788999999996 99999999754321 1112468999999999999999
Q ss_pred CCC
Q 021361 204 SLT 206 (313)
Q Consensus 204 p~~ 206 (313)
+..
T Consensus 395 ~~~ 397 (415)
T PRK11064 395 DHS 397 (415)
T ss_pred CCH
Confidence 864
No 346
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=95.27 E-value=0.49 Score=45.64 Aligned_cols=179 Identities=17% Similarity=0.198 Sum_probs=114.7
Q ss_pred cCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcC
Q 021361 88 DKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFG 167 (313)
Q Consensus 88 ~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g 167 (313)
+..|+|.|..- ++ +|=.+++-+++.+|- .|+.|+..+|.+.|.|.-|-++++.++..|
T Consensus 165 ~~~IPvFhDDq-qG--Taiv~lA~llnalk~-------------------~gk~l~d~kiv~~GAGAAgiaia~~l~~~g 222 (432)
T COG0281 165 RMNIPVFHDDQ-QG--TAIVTLAALLNALKL-------------------TGKKLKDQKIVINGAGAAGIAIADLLVAAG 222 (432)
T ss_pred cCCCCcccccc-cH--HHHHHHHHHHHHHHH-------------------hCCCccceEEEEeCCcHHHHHHHHHHHHhC
Confidence 45688888743 33 666778888887662 367899999999999999999999999999
Q ss_pred C---cEEEECCCCcc----cc----cccc---------cCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEE
Q 021361 168 C---PISYHSRSEKS----DA----NYKY---------YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGIL 227 (313)
Q Consensus 168 ~---~V~~~~~~~~~----~~----~~~~---------~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~ 227 (313)
+ +|+.+|+..-- .. ..+. ... ++.+..+|+++-+- ..+.+.++..+.|.++.++
T Consensus 223 ~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~adv~iG~S-----~~G~~t~e~V~~Ma~~PiI 296 (432)
T COG0281 223 VKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGADVLIGVS-----GVGAFTEEMVKEMAKHPII 296 (432)
T ss_pred CCcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCCCEEEEcC-----CCCCcCHHHHHHhccCCEE
Confidence 8 58999986421 10 0100 011 44677899766433 1288999999999999998
Q ss_pred EEcCCCCc-cCHHHHHHHHHhC-CceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHH-----HHHHHHHHHHHHH
Q 021361 228 INIGRGAH-IDEPELVSALLEG-RLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEET-----SKAMADLVIENLV 300 (313)
Q Consensus 228 in~~rg~~-vd~~al~~al~~g-~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~-----~~~~~~~~~~ni~ 300 (313)
.=.+-... +..+++.++ ..| .+-+ ...|.. --|..|+++-|-|+-..-++ .+.|...+++-|-
T Consensus 297 falaNP~pEi~Pe~a~~~-~~~aaiva------TGrsd~---PnQvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA 366 (432)
T COG0281 297 FALANPTPEITPEDAKEW-GDGAAIVA------TGRSDY---PNQVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIA 366 (432)
T ss_pred eecCCCCccCCHHHHhhc-CCCCEEEE------eCCCCC---cccccceeEcchhhhhhHhhccccCCHHHHHHHHHHHH
Confidence 88876553 222222222 222 2321 122211 12778999999887443332 2556666666666
Q ss_pred HHHc
Q 021361 301 AHFS 304 (313)
Q Consensus 301 ~~~~ 304 (313)
.+.+
T Consensus 367 ~~~~ 370 (432)
T COG0281 367 DLAR 370 (432)
T ss_pred hhcc
Confidence 5544
No 347
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.26 E-value=0.058 Score=47.43 Aligned_cols=38 Identities=32% Similarity=0.511 Sum_probs=33.8
Q ss_pred ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361 141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK 178 (313)
Q Consensus 141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~ 178 (313)
+++|+++.|.|. |.||+.+++.|...|++|++.+|+..
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~ 40 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNEN 40 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 367999999998 67999999999999999999998764
No 348
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.26 E-value=0.8 Score=40.75 Aligned_cols=42 Identities=19% Similarity=0.115 Sum_probs=36.6
Q ss_pred ccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361 137 ELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK 178 (313)
Q Consensus 137 ~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~ 178 (313)
+..-.++|++|.|||.|.++..=++.|..+|++|+++++...
T Consensus 18 pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~ 59 (223)
T PRK05562 18 FISLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFS 59 (223)
T ss_pred eeEEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 445577899999999999999988999999999999988654
No 349
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.26 E-value=0.19 Score=41.12 Aligned_cols=32 Identities=31% Similarity=0.440 Sum_probs=28.5
Q ss_pred EEEEEcCChhHHHHHHHHHhcCC-cEEEECCCC
Q 021361 146 SVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSE 177 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~ 177 (313)
+|.|+|+|.+|..+++.|...|. ++..+|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999999999999999999998 588888653
No 350
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=95.26 E-value=0.41 Score=43.26 Aligned_cols=86 Identities=14% Similarity=0.198 Sum_probs=67.8
Q ss_pred HHHHHHHHHhcCCcEEEECCCCccc----------ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCc
Q 021361 156 GTAIAKRVEAFGCPISYHSRSEKSD----------ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSG 225 (313)
Q Consensus 156 G~~~a~~l~~~g~~V~~~~~~~~~~----------~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga 225 (313)
|..||-.+...|++|...+|+.+-. .+++..++-.+..+.+.+.++-+|.-..|.++. ++.++.+++|+
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA 111 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA 111 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence 6778889999999999999876532 345556677788999999999999988887664 56899999999
Q ss_pred EEEEcCCCCccCHHHHHHHH
Q 021361 226 ILINIGRGAHIDEPELVSAL 245 (313)
Q Consensus 226 ~~in~~rg~~vd~~al~~al 245 (313)
+++|+-.-+.+ .|+..|
T Consensus 112 VicnTCT~sp~---vLy~~L 128 (340)
T COG4007 112 VICNTCTVSPV---VLYYSL 128 (340)
T ss_pred EecccccCchh---HHHHHh
Confidence 99999775544 455555
No 351
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.25 E-value=0.061 Score=45.89 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=28.1
Q ss_pred EEEEEcCChhHHHHHHHHHhcCCc-EEEECCCC
Q 021361 146 SVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRSE 177 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~~ 177 (313)
+|+|||+|.+|..+++.|...|.. +..+|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 589999999999999999999995 88887653
No 352
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.21 E-value=0.094 Score=49.26 Aligned_cols=85 Identities=18% Similarity=0.317 Sum_probs=57.7
Q ss_pred CCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccc-----cccccc-----CCHHHHHh---hCCeeEEecCCChH
Q 021361 143 SGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSD-----ANYKYY-----TNIIDLAS---NCQILIVACSLTEE 208 (313)
Q Consensus 143 ~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~-----~~~~~~-----~~l~~l~~---~aDvv~l~~p~~~~ 208 (313)
.|++|.|+|.|.+|...++.++..|. +|++.++++++. .++... .++.++.. ..|+++-++.....
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~~~ 248 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHPSS 248 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCHHH
Confidence 58899999999999999999999999 588888765432 222111 13334332 26888776643211
Q ss_pred hhhccCHHHHhhcCCCcEEEEcCC
Q 021361 209 THHIVNRKVIDALGPSGILINIGR 232 (313)
Q Consensus 209 t~~~i~~~~l~~mk~ga~~in~~r 232 (313)
+ ...++.++++..++.+|.
T Consensus 249 ----~-~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 249 ----I-NTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ----H-HHHHHHhhcCCEEEEEcc
Confidence 1 245677888888888875
No 353
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=95.21 E-value=0.063 Score=49.78 Aligned_cols=85 Identities=14% Similarity=0.147 Sum_probs=53.4
Q ss_pred CCCEEEEEcCChhHHHHHHHHHhcCCc-EEEECCCCccccccc--ccCCHHH-HHhhCCeeEEecCCChHhhhccCHHHH
Q 021361 143 SGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRSEKSDANYK--YYTNIID-LASNCQILIVACSLTEETHHIVNRKVI 218 (313)
Q Consensus 143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~~~~~~~~~--~~~~l~~-l~~~aDvv~l~~p~~~~t~~~i~~~~l 218 (313)
+|+++.|+|.|.+|...++.++.+|++ |.+.++..+...... ...+.++ .-...|+|+-++.... .+ ...+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~~~~g~Dvvid~~G~~~----~~-~~~~ 218 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKDPRRDYRAIYDASGDPS----LI-DTLV 218 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhccCCCCCEEEECCCCHH----HH-HHHH
Confidence 477899999999999999999999998 556666543321111 0111111 1124677777665321 11 2456
Q ss_pred hhcCCCcEEEEcCC
Q 021361 219 DALGPSGILINIGR 232 (313)
Q Consensus 219 ~~mk~ga~~in~~r 232 (313)
+.++++..++.+|-
T Consensus 219 ~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 219 RRLAKGGEIVLAGF 232 (308)
T ss_pred HhhhcCcEEEEEee
Confidence 77888888887763
No 354
>PRK05086 malate dehydrogenase; Provisional
Probab=95.18 E-value=0.065 Score=50.14 Aligned_cols=89 Identities=13% Similarity=0.237 Sum_probs=55.6
Q ss_pred CEEEEEcC-ChhHHHHHHHHHh---cCCcEEEECCCCccc---c---ccc--c------cCCHHHHHhhCCeeEEecCCC
Q 021361 145 KSVGIVGL-GRIGTAIAKRVEA---FGCPISYHSRSEKSD---A---NYK--Y------YTNIIDLASNCQILIVACSLT 206 (313)
Q Consensus 145 ~~vgiiG~-G~iG~~~a~~l~~---~g~~V~~~~~~~~~~---~---~~~--~------~~~l~~l~~~aDvv~l~~p~~ 206 (313)
++|+|||. |.+|..++..+.. .+.++..+|+.+... . ... . ..++.+.++++|+|++++-..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~ 80 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA 80 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence 48999999 9999999988743 445788888764321 0 001 0 235567889999999987642
Q ss_pred hH---hh-hccC------HH---HHhhcCCCcEEEEcCCC
Q 021361 207 EE---TH-HIVN------RK---VIDALGPSGILINIGRG 233 (313)
Q Consensus 207 ~~---t~-~~i~------~~---~l~~mk~ga~~in~~rg 233 (313)
.. ++ .++. .+ .++...+.+++++++-.
T Consensus 81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP 120 (312)
T PRK05086 81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP 120 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 21 11 1111 22 23334577899998543
No 355
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=95.17 E-value=0.02 Score=45.22 Aligned_cols=95 Identities=17% Similarity=0.253 Sum_probs=59.1
Q ss_pred cCChhHHHHHHHHHhc----CCcE-EEECCCC--ccc-----ccccccCCHHHHHh--hCCeeEEecCCChHhhhccCHH
Q 021361 151 GLGRIGTAIAKRVEAF----GCPI-SYHSRSE--KSD-----ANYKYYTNIIDLAS--NCQILIVACSLTEETHHIVNRK 216 (313)
Q Consensus 151 G~G~iG~~~a~~l~~~----g~~V-~~~~~~~--~~~-----~~~~~~~~l~~l~~--~aDvv~l~~p~~~~t~~~i~~~ 216 (313)
|+|.||+.+++.+... +++| .+++++. ... .......++++++. +.|+|+=|.+..+.. .-
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~-----~~ 75 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVA-----EY 75 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHH-----HH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHH-----HH
Confidence 8999999999999865 6776 4566661 111 12344678999998 899999986543222 23
Q ss_pred HHhhcCCCcEEEEcCCCCcc---CHHHHHHHHHhCCc
Q 021361 217 VIDALGPSGILINIGRGAHI---DEPELVSALLEGRL 250 (313)
Q Consensus 217 ~l~~mk~ga~~in~~rg~~v---d~~al~~al~~g~~ 250 (313)
..+.|+.|.-+|-.+.+.+. ..+.|.++.++++.
T Consensus 76 ~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~ 112 (117)
T PF03447_consen 76 YEKALERGKHVVTANKGALADEALYEELREAARKNGV 112 (117)
T ss_dssp HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-
T ss_pred HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCC
Confidence 45567888889998888887 33445555554443
No 356
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=95.12 E-value=0.11 Score=49.41 Aligned_cols=62 Identities=10% Similarity=0.148 Sum_probs=47.0
Q ss_pred ccCCCEEEEEcCC--------hhHHHHHHHHHhcCCcEEEECCCCccc--------------cc--ccccCCHHHHHhhC
Q 021361 141 KFSGKSVGIVGLG--------RIGTAIAKRVEAFGCPISYHSRSEKSD--------------AN--YKYYTNIIDLASNC 196 (313)
Q Consensus 141 ~l~g~~vgiiG~G--------~iG~~~a~~l~~~g~~V~~~~~~~~~~--------------~~--~~~~~~l~~l~~~a 196 (313)
.|+|++|+|+|.| ++.++++..+..+|++|.+..|..-.. .+ ...+.++++.++++
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a 246 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA 246 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 4789999999853 455788889999999999888764211 11 22457899999999
Q ss_pred CeeEEe
Q 021361 197 QILIVA 202 (313)
Q Consensus 197 Dvv~l~ 202 (313)
|+|..-
T Consensus 247 Dvvyt~ 252 (357)
T TIGR03316 247 DIVYPK 252 (357)
T ss_pred CEEEEC
Confidence 999875
No 357
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.12 E-value=0.16 Score=47.74 Aligned_cols=98 Identities=10% Similarity=0.129 Sum_probs=62.0
Q ss_pred CEEEEEcC-ChhHHHHHHHHHhcCC-------cEEEECCCCcc--ccc---------------ccccCCHHHHHhhCCee
Q 021361 145 KSVGIVGL-GRIGTAIAKRVEAFGC-------PISYHSRSEKS--DAN---------------YKYYTNIIDLASNCQIL 199 (313)
Q Consensus 145 ~~vgiiG~-G~iG~~~a~~l~~~g~-------~V~~~~~~~~~--~~~---------------~~~~~~l~~l~~~aDvv 199 (313)
++|+|||. |.+|..+|-.|...|. ++..+|..... ..+ .....+..+.+++||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 58999999 9999999999886665 68888884332 111 01123456789999999
Q ss_pred EEecCCCh---Hhhh-cc--CH-------HHHhhcC-CCcEEEEcCCCCccCHHHHHHH
Q 021361 200 IVACSLTE---ETHH-IV--NR-------KVIDALG-PSGILINIGRGAHIDEPELVSA 244 (313)
Q Consensus 200 ~l~~p~~~---~t~~-~i--~~-------~~l~~mk-~ga~~in~~rg~~vd~~al~~a 244 (313)
+++.-... .++. ++ |. ..+.... |++++|+++ .++|.-.-+-.
T Consensus 83 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~~~ 139 (322)
T cd01338 83 LLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNALIAM 139 (322)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHHHHHH
Confidence 99875422 1211 11 11 1223334 588999986 66666654443
No 358
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.11 E-value=0.037 Score=54.45 Aligned_cols=108 Identities=18% Similarity=0.250 Sum_probs=70.0
Q ss_pred cCCCEEEEEcCChhHHH-HHHHHHhcCCcEEEECCCCccc------cccccc-CCHHHHHhhCCeeEEecCCCh---Hhh
Q 021361 142 FSGKSVGIVGLGRIGTA-IAKRVEAFGCPISYHSRSEKSD------ANYKYY-TNIIDLASNCQILIVACSLTE---ETH 210 (313)
Q Consensus 142 l~g~~vgiiG~G~iG~~-~a~~l~~~g~~V~~~~~~~~~~------~~~~~~-~~l~~l~~~aDvv~l~~p~~~---~t~ 210 (313)
.++++|.|+|+|..|.+ +|+.|+..|++|.++|...... .+.... ....+.+.++|+|+..--..+ ..+
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~ 84 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV 84 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence 56789999999999999 7999999999999999764321 122211 122344568998887543322 221
Q ss_pred -------hccCHH-HHhhc-CC-CcEEEEcCCCCccCHHHHHHHHHhCC
Q 021361 211 -------HIVNRK-VIDAL-GP-SGILINIGRGAHIDEPELVSALLEGR 249 (313)
Q Consensus 211 -------~~i~~~-~l~~m-k~-ga~~in~~rg~~vd~~al~~al~~g~ 249 (313)
.++++. ++..+ ++ -.+-|--+.|+.--..-+...|+...
T Consensus 85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 234433 33333 33 34555556788888888888887654
No 359
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=95.09 E-value=0.12 Score=47.01 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=31.8
Q ss_pred CCCEEEEEcCChhHHHHHHHHHhcCCc-EEEECCCCc
Q 021361 143 SGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRSEK 178 (313)
Q Consensus 143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~~~ 178 (313)
.|.+|.|+|.|.+|..+++.++.+|.+ |++.+++.+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~ 156 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPD 156 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence 588999999999999999999999997 887776554
No 360
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=95.08 E-value=0.27 Score=43.57 Aligned_cols=36 Identities=28% Similarity=0.471 Sum_probs=32.5
Q ss_pred CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361 143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK 178 (313)
Q Consensus 143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~ 178 (313)
.|.+|.|.|.|.+|+.+++.++..|.+|.+.+++.+
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~ 169 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDE 169 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHH
Confidence 578999999999999999999999999998887653
No 361
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=95.07 E-value=0.13 Score=48.60 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=47.0
Q ss_pred cccCCCEEEEEcC---ChhHHHHHHHHH-hcCCcEEEECCCCccc----------cc--ccccCCHHHHHhhCCeeEE
Q 021361 140 SKFSGKSVGIVGL---GRIGTAIAKRVE-AFGCPISYHSRSEKSD----------AN--YKYYTNIIDLASNCQILIV 201 (313)
Q Consensus 140 ~~l~g~~vgiiG~---G~iG~~~a~~l~-~~g~~V~~~~~~~~~~----------~~--~~~~~~l~~l~~~aDvv~l 201 (313)
..+.|++|+++|= +++..+++..+. .+|++|.+..|..-.. .+ .....++++.++++|+|..
T Consensus 155 ~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt 232 (338)
T PRK08192 155 RGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYL 232 (338)
T ss_pred CCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEE
Confidence 3588999999999 578888888766 4599998888754211 01 2335789999999999988
No 362
>PRK07806 short chain dehydrogenase; Provisional
Probab=95.07 E-value=0.092 Score=46.50 Aligned_cols=37 Identities=24% Similarity=0.374 Sum_probs=32.8
Q ss_pred ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCC
Q 021361 141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSE 177 (313)
Q Consensus 141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~ 177 (313)
.+.|+++.|.|. |.||+.+++.|...|++|++.+|+.
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~ 40 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK 40 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence 367899999996 8999999999999999998887754
No 363
>PRK04148 hypothetical protein; Provisional
Probab=95.03 E-value=0.047 Score=44.57 Aligned_cols=62 Identities=15% Similarity=0.232 Sum_probs=45.3
Q ss_pred CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc-----c-----ccccCCHHHHHhhCCeeEEecCC
Q 021361 143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA-----N-----YKYYTNIIDLASNCQILIVACSL 205 (313)
Q Consensus 143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-----~-----~~~~~~l~~l~~~aDvv~l~~p~ 205 (313)
+++++..||+| -|..+|+.|...|++|++.|.++.... . ...+..--++-+.+|+|-..-|-
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp 87 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPP 87 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCC
Confidence 56899999999 999999999999999999998876321 1 11123344566677777666653
No 364
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=94.99 E-value=0.042 Score=55.53 Aligned_cols=83 Identities=19% Similarity=0.230 Sum_probs=56.3
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccc----cCCHHHH----HhhCCeeEEecCCChHhhh
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKY----YTNIIDL----ASNCQILIVACSLTEETHH 211 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~----~~~l~~l----~~~aDvv~l~~p~~~~t~~ 211 (313)
.++-|+|+|++|+.+++.|+..|.++++.|.+++.. .+... ..+.+-+ ++++|.++++++.+.++..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence 568999999999999999999999999999876532 11111 1222222 4689999999987766655
Q ss_pred ccCHHHHhhcCCCcEEEE
Q 021361 212 IVNRKVIDALGPSGILIN 229 (313)
Q Consensus 212 ~i~~~~l~~mk~ga~~in 229 (313)
++.. . ..+.++..+|-
T Consensus 498 iv~~-~-~~~~~~~~iia 513 (558)
T PRK10669 498 IVAS-A-REKRPDIEIIA 513 (558)
T ss_pred HHHH-H-HHHCCCCeEEE
Confidence 5443 2 22345555554
No 365
>PRK06349 homoserine dehydrogenase; Provisional
Probab=94.97 E-value=0.11 Score=50.85 Aligned_cols=103 Identities=19% Similarity=0.275 Sum_probs=62.7
Q ss_pred CEEEEEcCChhHHHHHHHHHhc----------CCcE-EEECCCCcccc-----cccccCCHHHHHh--hCCeeEEecCCC
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAF----------GCPI-SYHSRSEKSDA-----NYKYYTNIIDLAS--NCQILIVACSLT 206 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~----------g~~V-~~~~~~~~~~~-----~~~~~~~l~~l~~--~aDvv~l~~p~~ 206 (313)
-+|||+|+|.+|+.+++.+... +.+| .+++++..... ....+.++++++. +.|+|+.+++..
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~ 83 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI 83 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence 4799999999999999887542 3444 45676654322 1234578999996 479999887653
Q ss_pred hHhhhccCHHHHhhcCCCcEEEEcCCCCcc-CHHHHHHHHHhCCce
Q 021361 207 EETHHIVNRKVIDALGPSGILINIGRGAHI-DEPELVSALLEGRLA 251 (313)
Q Consensus 207 ~~t~~~i~~~~l~~mk~ga~~in~~rg~~v-d~~al~~al~~g~~~ 251 (313)
..... -..+.|+.|.-+|..-.+... .-+.|.++.++.+..
T Consensus 84 ~~~~~----~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~ 125 (426)
T PRK06349 84 EPARE----LILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVD 125 (426)
T ss_pred hHHHH----HHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCc
Confidence 22111 122446666655543332222 236677777666553
No 366
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=94.97 E-value=0.049 Score=51.61 Aligned_cols=56 Identities=25% Similarity=0.469 Sum_probs=42.3
Q ss_pred EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccccc--cc-----ccCC---HHHHHhhCCeeEE
Q 021361 146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDAN--YK-----YYTN---IIDLASNCQILIV 201 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~--~~-----~~~~---l~~l~~~aDvv~l 201 (313)
+|||||.|..|+.+++.++.+|++|+++|..+..... +. .+.+ +.++++.||+|..
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~ 66 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITF 66 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEe
Confidence 5899999999999999999999999999987643211 10 1223 6667888898754
No 367
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.97 E-value=0.043 Score=54.05 Aligned_cols=104 Identities=11% Similarity=0.116 Sum_probs=64.9
Q ss_pred CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccccc------cc-ccCCHHHHHhhCCeeEEecCCChH---hh--
Q 021361 143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDAN------YK-YYTNIIDLASNCQILIVACSLTEE---TH-- 210 (313)
Q Consensus 143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~------~~-~~~~l~~l~~~aDvv~l~~p~~~~---t~-- 210 (313)
.||+|+|+|+|.-|.+.++.|+. |++|.++|........ .. ......+.+.++|+|+..-...+. ..
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a 83 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIA 83 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHH
Confidence 47899999999999999999995 9999999954322110 01 111123456789988775433222 11
Q ss_pred -----hccCHH-HH-hhcCC-CcEEEEcCCCCccCHHHHHHHHHh
Q 021361 211 -----HIVNRK-VI-DALGP-SGILINIGRGAHIDEPELVSALLE 247 (313)
Q Consensus 211 -----~~i~~~-~l-~~mk~-ga~~in~~rg~~vd~~al~~al~~ 247 (313)
.++++- ++ ..++. ..+-|--+.|+.....-+...|+.
T Consensus 84 ~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~ 128 (454)
T PRK01368 84 KNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNS 128 (454)
T ss_pred HHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 233333 32 33333 244455557888888888888876
No 368
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=94.96 E-value=0.081 Score=56.89 Aligned_cols=64 Identities=19% Similarity=0.221 Sum_probs=46.0
Q ss_pred CCCEEEEEcCChhHHHHHHHHHhc-CCc-------------EEEECCCCcccc-------c---ccc-cCCHHHH---Hh
Q 021361 143 SGKSVGIVGLGRIGTAIAKRVEAF-GCP-------------ISYHSRSEKSDA-------N---YKY-YTNIIDL---AS 194 (313)
Q Consensus 143 ~g~~vgiiG~G~iG~~~a~~l~~~-g~~-------------V~~~~~~~~~~~-------~---~~~-~~~l~~l---~~ 194 (313)
+.|+|+|||.|.||+..|+.|... +.+ |.+.|++.+... + ... +.+.+++ ++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 477999999999999999999754 333 788887764321 1 111 3455555 46
Q ss_pred hCCeeEEecCCC
Q 021361 195 NCQILIVACSLT 206 (313)
Q Consensus 195 ~aDvv~l~~p~~ 206 (313)
++|+|++++|..
T Consensus 648 ~~DaVIsalP~~ 659 (1042)
T PLN02819 648 QVDVVISLLPAS 659 (1042)
T ss_pred CCCEEEECCCch
Confidence 899999999974
No 369
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=94.95 E-value=0.14 Score=50.00 Aligned_cols=94 Identities=15% Similarity=0.174 Sum_probs=62.4
Q ss_pred ccccCCCEEEEEcC----------ChhHHHHHHHHHhcCCcEEEECCCCcccccccc--cCCHHH-HHhhCCeeEEecCC
Q 021361 139 GSKFSGKSVGIVGL----------GRIGTAIAKRVEAFGCPISYHSRSEKSDANYKY--YTNIID-LASNCQILIVACSL 205 (313)
Q Consensus 139 ~~~l~g~~vgiiG~----------G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~--~~~l~~-l~~~aDvv~l~~p~ 205 (313)
++.++|++|+|+|+ .+-+..+++.|...|.+|.+|||.-........ ...+++ .++.||+|++++..
T Consensus 309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~h 388 (425)
T PRK15182 309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPVSEVKSSHYDAIIVAVGH 388 (425)
T ss_pred CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcccchhhhhcCCCEEEEccCC
Confidence 45688999999999 457889999999999999999997322111010 111222 36789999999976
Q ss_pred ChHhhhccCHHHHh-hcCCCcEEEEcCCCCc
Q 021361 206 TEETHHIVNRKVID-ALGPSGILINIGRGAH 235 (313)
Q Consensus 206 ~~~t~~~i~~~~l~-~mk~ga~~in~~rg~~ 235 (313)
.+- + -++.+.+. .|+...++++ +|+-+
T Consensus 389 ~~f-~-~~~~~~~~~~~~~~~~iiD-~r~~~ 416 (425)
T PRK15182 389 QQF-K-QMGSEDIRGFGKDKHVLYD-LKYVL 416 (425)
T ss_pred HHh-h-cCCHHHHHHhcCCCCEEEE-CCCCC
Confidence 432 2 24544443 4554568888 46654
No 370
>PRK06392 homoserine dehydrogenase; Provisional
Probab=94.94 E-value=0.11 Score=49.02 Aligned_cols=105 Identities=10% Similarity=0.217 Sum_probs=63.3
Q ss_pred EEEEEcCChhHHHHHHHHHh--------cCCcEE-EECCCCc--cccc--------------cc-c-cC--CHHHHH-hh
Q 021361 146 SVGIVGLGRIGTAIAKRVEA--------FGCPIS-YHSRSEK--SDAN--------------YK-Y-YT--NIIDLA-SN 195 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~--------~g~~V~-~~~~~~~--~~~~--------------~~-~-~~--~l~~l~-~~ 195 (313)
+|+|+|+|++|+.+++.|.. ++.+|. +.|++.. ...+ .. . .. ++++++ .+
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~~ 81 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEIK 81 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcCC
Confidence 79999999999999999876 455654 4454431 0110 00 0 12 456654 36
Q ss_pred CCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCcc-CHHHHHHHHHhCCce
Q 021361 196 CQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHI-DEPELVSALLEGRLA 251 (313)
Q Consensus 196 aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~v-d~~al~~al~~g~~~ 251 (313)
+|+|+=++|...+-... -.-+.+.|+.|.-+|-...|.+. ..+.|.+..++++..
T Consensus 82 ~DVvVE~t~~~~~g~~~-~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~ 137 (326)
T PRK06392 82 PDVIVDVTPASKDGIRE-KNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRI 137 (326)
T ss_pred CCEEEECCCCCCcCchH-HHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCe
Confidence 89999888753211111 12234557788888888777765 456666666665443
No 371
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=94.93 E-value=0.16 Score=50.67 Aligned_cols=91 Identities=13% Similarity=0.106 Sum_probs=66.0
Q ss_pred ccCCCEEEEEcC---ChhHHHHHHHHHhcC-CcEEEECCCCccc----------cc--ccccCCHHHHHhhCCee--EE-
Q 021361 141 KFSGKSVGIVGL---GRIGTAIAKRVEAFG-CPISYHSRSEKSD----------AN--YKYYTNIIDLASNCQIL--IV- 201 (313)
Q Consensus 141 ~l~g~~vgiiG~---G~iG~~~a~~l~~~g-~~V~~~~~~~~~~----------~~--~~~~~~l~~l~~~aDvv--~l- 201 (313)
.+.|++|+++|= |++.++++..+..+| ++|.+..|..-.. .+ .....++++.++++|+. ..
T Consensus 171 ~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~tdvw~~ 250 (525)
T PRK13376 171 DNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDVAKIWYF 250 (525)
T ss_pred CcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCccceEEE
Confidence 478999999998 589999999999998 9998887754311 12 22357899999999952 22
Q ss_pred ------ecCCC--h---H--hhhccCHHHHhhcCCCcEEEEcC
Q 021361 202 ------ACSLT--E---E--THHIVNRKVIDALGPSGILINIG 231 (313)
Q Consensus 202 ------~~p~~--~---~--t~~~i~~~~l~~mk~ga~~in~~ 231 (313)
..... + . -...++.+.++.+|++++|+-+.
T Consensus 251 ~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcL 293 (525)
T PRK13376 251 TRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPL 293 (525)
T ss_pred eccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCC
Confidence 12111 0 1 12356889999999999999887
No 372
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=94.91 E-value=0.28 Score=40.16 Aligned_cols=93 Identities=17% Similarity=0.241 Sum_probs=66.3
Q ss_pred HHHHHHHhcCCcEEEECCCCcc---------cccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEE
Q 021361 158 AIAKRVEAFGCPISYHSRSEKS---------DANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILI 228 (313)
Q Consensus 158 ~~a~~l~~~g~~V~~~~~~~~~---------~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~i 228 (313)
..+++|...|++|++=.-.... ..|+....+.++++++||+|+-.-|. ..+.++.|++|.++|
T Consensus 18 ~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p--------~~~e~~~l~~g~~li 89 (136)
T PF05222_consen 18 EDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPP--------SEEELALLKPGQTLI 89 (136)
T ss_dssp HHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEE
T ss_pred HHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCC--------CHHHHhhcCCCcEEE
Confidence 5678888889999875543322 13445556777999999998876654 356788899999999
Q ss_pred EcCCCCccCHHHHHHHHHhCCceEEEccCCCC
Q 021361 229 NIGRGAHIDEPELVSALLEGRLAGAGLDVYEN 260 (313)
Q Consensus 229 n~~rg~~vd~~al~~al~~g~~~ga~lDV~~~ 260 (313)
-..... ....+++.|.+.++...++|-...
T Consensus 90 ~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr 119 (136)
T PF05222_consen 90 GFLHPA--QNKELLEALAKKGITAFALELIPR 119 (136)
T ss_dssp EE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred Eeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence 876555 588899999999999888887544
No 373
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.88 E-value=0.072 Score=52.15 Aligned_cols=108 Identities=15% Similarity=0.222 Sum_probs=69.5
Q ss_pred cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc---------cccccc--CCHHHHHhhCCeeEEecCCChH--
Q 021361 142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD---------ANYKYY--TNIIDLASNCQILIVACSLTEE-- 208 (313)
Q Consensus 142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~---------~~~~~~--~~l~~l~~~aDvv~l~~p~~~~-- 208 (313)
+.++++.|+|.|.+|.++|+.|...|++|.++|...... .+.... ...++.+.++|+|+..--..+.
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p 82 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQP 82 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCH
Confidence 568999999999999999999999999999998754321 122211 1123455789998886544432
Q ss_pred -hh-------hccC-HHHHhh-cC---CCcEEEEcCCCCccCHHHHHHHHHhCC
Q 021361 209 -TH-------HIVN-RKVIDA-LG---PSGILINIGRGAHIDEPELVSALLEGR 249 (313)
Q Consensus 209 -t~-------~~i~-~~~l~~-mk---~ga~~in~~rg~~vd~~al~~al~~g~ 249 (313)
.+ .++. .+.+.. ++ ...+-|--+.|+.--.+-+...|+...
T Consensus 83 ~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g 136 (445)
T PRK04308 83 DIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCG 136 (445)
T ss_pred HHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence 21 1222 233333 32 234555555788888888888887633
No 374
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.85 E-value=0.049 Score=55.54 Aligned_cols=88 Identities=27% Similarity=0.368 Sum_probs=60.1
Q ss_pred CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccc----cCCHHHH----HhhCCeeEEecCCChHhh
Q 021361 144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKY----YTNIIDL----ASNCQILIVACSLTEETH 210 (313)
Q Consensus 144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~----~~~l~~l----~~~aDvv~l~~p~~~~t~ 210 (313)
..++-|+|+|++|+.+++.|...|.++++.|.+++.. .+... .++.+-+ +.+||.++++++..+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 3579999999999999999999999999999877532 12111 1222222 568999999998766555
Q ss_pred hccCHHHHhhcCCCcEEEEcCCC
Q 021361 211 HIVNRKVIDALGPSGILINIGRG 233 (313)
Q Consensus 211 ~~i~~~~l~~mk~ga~~in~~rg 233 (313)
.++ ...+.+.|...++--+|.
T Consensus 480 ~i~--~~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 480 KIV--ELCQQHFPHLHILARARG 500 (601)
T ss_pred HHH--HHHHHHCCCCeEEEEeCC
Confidence 433 234455566666654443
No 375
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=94.84 E-value=0.13 Score=49.56 Aligned_cols=62 Identities=11% Similarity=0.279 Sum_probs=48.2
Q ss_pred ccCCCEEEEEcC-----C---hhHHHHHHHHHhcCCcEEEECCCCcc---c-----------cc--ccccCCHHHHHhhC
Q 021361 141 KFSGKSVGIVGL-----G---RIGTAIAKRVEAFGCPISYHSRSEKS---D-----------AN--YKYYTNIIDLASNC 196 (313)
Q Consensus 141 ~l~g~~vgiiG~-----G---~iG~~~a~~l~~~g~~V~~~~~~~~~---~-----------~~--~~~~~~l~~l~~~a 196 (313)
.+.|++|+|+|- | ++.++++..+..+|++|.+..|..-. . .+ +..+.++++.++++
T Consensus 184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~a 263 (395)
T PRK07200 184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDA 263 (395)
T ss_pred ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 478999999985 5 56799999999999999988876421 0 01 22357999999999
Q ss_pred CeeEEe
Q 021361 197 QILIVA 202 (313)
Q Consensus 197 Dvv~l~ 202 (313)
|+|..-
T Consensus 264 DvVYtd 269 (395)
T PRK07200 264 DIVYPK 269 (395)
T ss_pred CEEEEc
Confidence 999875
No 376
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.76 E-value=0.081 Score=51.68 Aligned_cols=87 Identities=24% Similarity=0.240 Sum_probs=57.3
Q ss_pred cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-------ccccc----cCCHHHH----HhhCCeeEEecCCC
Q 021361 142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-------ANYKY----YTNIIDL----ASNCQILIVACSLT 206 (313)
Q Consensus 142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-------~~~~~----~~~l~~l----~~~aDvv~l~~p~~ 206 (313)
+..+++.|+|+|.+|+.+++.|...|.+|+++++.++.. .+... ..+.+.+ +.++|.|+++++.+
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 456899999999999999999999999999998876531 11111 1223222 46899998888765
Q ss_pred hHhhhccCHHHHhhcCCCcEEEEc
Q 021361 207 EETHHIVNRKVIDALGPSGILINI 230 (313)
Q Consensus 207 ~~t~~~i~~~~l~~mk~ga~~in~ 230 (313)
..+ ++-......+.+..+++-+
T Consensus 309 ~~n--~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 309 EAN--ILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred HHH--HHHHHHHHHhCCCeEEEEE
Confidence 433 3333334445555555543
No 377
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=94.76 E-value=0.09 Score=48.88 Aligned_cols=84 Identities=19% Similarity=0.375 Sum_probs=56.1
Q ss_pred EEEEcCChhHHHHHHHHHhcC--CcEEEECCCCccccc----------c----cc--cCCHHHHHhhCCeeEEecCCChH
Q 021361 147 VGIVGLGRIGTAIAKRVEAFG--CPISYHSRSEKSDAN----------Y----KY--YTNIIDLASNCQILIVACSLTEE 208 (313)
Q Consensus 147 vgiiG~G~iG~~~a~~l~~~g--~~V~~~~~~~~~~~~----------~----~~--~~~l~~l~~~aDvv~l~~p~~~~ 208 (313)
|+|||.|.+|..+|-.+...| .++..+|+..+...+ . .. ..+ .+.+++||+|+++......
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~ 79 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCC
Confidence 589999999999999998888 479999987653211 0 11 123 4688999999998864221
Q ss_pred ---hh--------hccC--HHHHhhcCCCcEEEEcC
Q 021361 209 ---TH--------HIVN--RKVIDALGPSGILINIG 231 (313)
Q Consensus 209 ---t~--------~~i~--~~~l~~mk~ga~~in~~ 231 (313)
++ .++. ...+....|++++++++
T Consensus 80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s 115 (300)
T cd00300 80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 11 1111 12334455889999987
No 378
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=94.76 E-value=0.44 Score=44.46 Aligned_cols=136 Identities=18% Similarity=0.259 Sum_probs=81.2
Q ss_pred CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc------------ccc----ccccCCHHHHHhhCCeeEEecCCChH
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS------------DAN----YKYYTNIIDLASNCQILIVACSLTEE 208 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~------------~~~----~~~~~~l~~l~~~aDvv~l~~p~~~~ 208 (313)
.+|.|+|.|.||.-++-+|...|..|..+.|.... ..+ ......-.+.+..+|+|++++-.. +
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~-q 79 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAY-Q 79 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEeccc-c
Confidence 37999999999999999999999778888776631 011 001123334556899999988643 3
Q ss_pred hhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCc--ccCCCCcEEEcCCCCCCc
Q 021361 209 THHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPE--QMLGLNNVVLLPHVGSDT 284 (313)
Q Consensus 209 t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~--~l~~~pnvi~TPHia~~t 284 (313)
+...+ +.....+++.+.++-. .-++=.++.+.......++. .++..+...-..+. .......+.+.+..++.+
T Consensus 80 ~~~al-~~l~~~~~~~t~vl~l-qNG~g~~e~l~~~~~~~~il-~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 80 LEEAL-PSLAPLLGPNTVVLFL-QNGLGHEEELRKILPKETVL-GGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred HHHHH-HHhhhcCCCCcEEEEE-eCCCcHHHHHHHhCCcceEE-EEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence 33333 3456667778766644 33444555555555555444 22332221111111 344467788888777555
No 379
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=94.74 E-value=0.093 Score=49.04 Aligned_cols=66 Identities=23% Similarity=0.342 Sum_probs=48.5
Q ss_pred CEEEEEcCChhH-HHHHHHHHhcC--Cc-EEEECCCCccc------ccc-cccCCHHHHHhh--CCeeEEecCCChHhh
Q 021361 145 KSVGIVGLGRIG-TAIAKRVEAFG--CP-ISYHSRSEKSD------ANY-KYYTNIIDLASN--CQILIVACSLTEETH 210 (313)
Q Consensus 145 ~~vgiiG~G~iG-~~~a~~l~~~g--~~-V~~~~~~~~~~------~~~-~~~~~l~~l~~~--aDvv~l~~p~~~~t~ 210 (313)
.++||||+|.++ +..+..+...+ ++ +.++|++++.. .+. ..+.+++++++. .|+|++++|..-+..
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e 82 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHAE 82 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhHH
Confidence 489999999776 55888888776 35 45678887642 222 357899999986 599999999765533
No 380
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=94.73 E-value=0.13 Score=47.78 Aligned_cols=83 Identities=18% Similarity=0.125 Sum_probs=53.8
Q ss_pred CCEEEEEcCChhHHHHHHHHHh-cCCcE-EEECCCCccc-------ccccc-cCCHHHHHh-----hCCeeEEecCCChH
Q 021361 144 GKSVGIVGLGRIGTAIAKRVEA-FGCPI-SYHSRSEKSD-------ANYKY-YTNIIDLAS-----NCQILIVACSLTEE 208 (313)
Q Consensus 144 g~~vgiiG~G~iG~~~a~~l~~-~g~~V-~~~~~~~~~~-------~~~~~-~~~l~~l~~-----~aDvv~l~~p~~~~ 208 (313)
..++||||.|+||+..+..+.. -++++ .++++.+++. .+... +.+.+++++ +.|+|+.++|...+
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H 83 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAH 83 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHH
Confidence 4589999999999997776664 35675 4566655421 23332 467899985 58889999975433
Q ss_pred hhhccCHHHHhhcCCCcEEEEcC
Q 021361 209 THHIVNRKVIDALGPSGILINIG 231 (313)
Q Consensus 209 t~~~i~~~~l~~mk~ga~~in~~ 231 (313)
.+ . .....+.|..+|+-+
T Consensus 84 ~e--~---a~~a~eaGk~VID~s 101 (302)
T PRK08300 84 VR--H---AAKLREAGIRAIDLT 101 (302)
T ss_pred HH--H---HHHHHHcCCeEEECC
Confidence 22 1 122345677777765
No 381
>PRK15076 alpha-galactosidase; Provisional
Probab=94.70 E-value=0.053 Score=53.05 Aligned_cols=109 Identities=11% Similarity=0.094 Sum_probs=67.9
Q ss_pred CEEEEEcCChhHHHHHH--HH---Hhc-CCcEEEECCCCcccc-------------c----ccccCCHHHHHhhCCeeEE
Q 021361 145 KSVGIVGLGRIGTAIAK--RV---EAF-GCPISYHSRSEKSDA-------------N----YKYYTNIIDLASNCQILIV 201 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~--~l---~~~-g~~V~~~~~~~~~~~-------------~----~~~~~~l~~l~~~aDvv~l 201 (313)
.+|+|||.|++|-..+- .+ .++ |.+|..+|...+... + .....++.+.++.||+|+.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 48999999999844433 22 223 458999998764321 0 1224577899999999999
Q ss_pred ecCCC--hHhh-----------------hc----------cC-------HHHHhhcCCCcEEEEcCCCCccCHHHHHHHH
Q 021361 202 ACSLT--EETH-----------------HI----------VN-------RKVIDALGPSGILINIGRGAHIDEPELVSAL 245 (313)
Q Consensus 202 ~~p~~--~~t~-----------------~~----------i~-------~~~l~~mk~ga~~in~~rg~~vd~~al~~al 245 (313)
+.-.. ..-+ .. -+ .+.++...|++++||++-.-=+-..++. .+
T Consensus 82 ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~~-~~ 160 (431)
T PRK15076 82 AIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAMN-RY 160 (431)
T ss_pred eeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHh-cC
Confidence 88653 1110 01 00 1234446789999999876655555555 23
Q ss_pred HhCCceEEE
Q 021361 246 LEGRLAGAG 254 (313)
Q Consensus 246 ~~g~~~ga~ 254 (313)
...++.|.+
T Consensus 161 ~~~rviG~c 169 (431)
T PRK15076 161 PGIKTVGLC 169 (431)
T ss_pred CCCCEEEEC
Confidence 445666665
No 382
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=94.68 E-value=0.27 Score=44.50 Aligned_cols=121 Identities=20% Similarity=0.220 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhc----CC-------cEEE
Q 021361 104 VADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAF----GC-------PISY 172 (313)
Q Consensus 104 vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~----g~-------~V~~ 172 (313)
+|--+++-+++..|- .|+.|.+.+|.|+|.|..|-.+|+.+... |. +++.
T Consensus 4 TaaV~lAgll~Al~~-------------------~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~l 64 (255)
T PF03949_consen 4 TAAVVLAGLLNALRV-------------------TGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWL 64 (255)
T ss_dssp HHHHHHHHHHHHHHH-------------------HTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEE
T ss_pred hHHHHHHHHHHHHHH-------------------hCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEE
Confidence 566677888887663 24568899999999999999999999887 87 4888
Q ss_pred ECCCCc----c-c-c-----------cccccCCHHHHHhhC--CeeEEecCCChHhhhccCHHHHhhcCC---CcEEEEc
Q 021361 173 HSRSEK----S-D-A-----------NYKYYTNIIDLASNC--QILIVACSLTEETHHIVNRKVIDALGP---SGILINI 230 (313)
Q Consensus 173 ~~~~~~----~-~-~-----------~~~~~~~l~~l~~~a--Dvv~l~~p~~~~t~~~i~~~~l~~mk~---ga~~in~ 230 (313)
+|+..- . . . ......++.|+++.+ |+++=.. ...+.+.++.++.|.+ ..++.=.
T Consensus 65 vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S----~~~g~ft~evv~~Ma~~~erPIIF~L 140 (255)
T PF03949_consen 65 VDSKGLLTDDREDLNPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLS----GQGGAFTEEVVRAMAKHNERPIIFPL 140 (255)
T ss_dssp EETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECS----SSTTSS-HHHHHHCHHHSSSEEEEE-
T ss_pred EeccceEeccCccCChhhhhhhccCcccccccCHHHHHHhcCCCEEEEec----CCCCcCCHHHHHHHhccCCCCEEEEC
Confidence 887531 1 0 0 001124899999998 9877643 2567899999999987 8999999
Q ss_pred CCCCccCHHHHHHHHHh
Q 021361 231 GRGAHIDEPELVSALLE 247 (313)
Q Consensus 231 ~rg~~vd~~al~~al~~ 247 (313)
|.....-|-.-.++.+-
T Consensus 141 SNPt~~aE~~peda~~~ 157 (255)
T PF03949_consen 141 SNPTPKAECTPEDAYEW 157 (255)
T ss_dssp SSSCGGSSS-HHHHHHT
T ss_pred CCCCCcccCCHHHHHhh
Confidence 88777444444444443
No 383
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=94.56 E-value=0.12 Score=48.76 Aligned_cols=85 Identities=21% Similarity=0.360 Sum_probs=55.7
Q ss_pred CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCC---Cccc-----cccccc----CCHHH--HHhhCCeeEEecCCChH
Q 021361 143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS---EKSD-----ANYKYY----TNIID--LASNCQILIVACSLTEE 208 (313)
Q Consensus 143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~---~~~~-----~~~~~~----~~l~~--l~~~aDvv~l~~p~~~~ 208 (313)
.|.+|.|+|.|.+|...++.++..|++|++.+++ +++. .++... .+..+ .....|+|+-++....
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~- 250 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPP- 250 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHH-
Confidence 5889999999999999999999999999998874 2211 121111 11111 1234688887765321
Q ss_pred hhhccCHHHHhhcCCCcEEEEcCC
Q 021361 209 THHIVNRKVIDALGPSGILINIGR 232 (313)
Q Consensus 209 t~~~i~~~~l~~mk~ga~~in~~r 232 (313)
.+ .+.++.|+++..++.+|.
T Consensus 251 ---~~-~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 251 ---LA-FEALPALAPNGVVILFGV 270 (355)
T ss_pred ---HH-HHHHHHccCCcEEEEEec
Confidence 12 345677888888877764
No 384
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=94.53 E-value=0.19 Score=47.28 Aligned_cols=94 Identities=11% Similarity=0.143 Sum_probs=59.8
Q ss_pred CEEEEEcC-ChhHHHHHHHHHhcCC-------cEEEECCCCcc--ccc---------------ccccCCHHHHHhhCCee
Q 021361 145 KSVGIVGL-GRIGTAIAKRVEAFGC-------PISYHSRSEKS--DAN---------------YKYYTNIIDLASNCQIL 199 (313)
Q Consensus 145 ~~vgiiG~-G~iG~~~a~~l~~~g~-------~V~~~~~~~~~--~~~---------------~~~~~~l~~l~~~aDvv 199 (313)
.+|+|||. |.+|..+|-.|...|. ++..+|..... ..+ .....+..+.+++||+|
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV 83 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA 83 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence 48999998 9999999999987674 68888885421 111 01123556889999999
Q ss_pred EEecCCCh---Hhhh-cc--CH-------HHHhhcCC-CcEEEEcCCCCccCHHH
Q 021361 200 IVACSLTE---ETHH-IV--NR-------KVIDALGP-SGILINIGRGAHIDEPE 240 (313)
Q Consensus 200 ~l~~p~~~---~t~~-~i--~~-------~~l~~mk~-ga~~in~~rg~~vd~~a 240 (313)
+++.-... .++. ++ |. ..+....| +++++.++ .++|.-.
T Consensus 84 VitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t 136 (323)
T TIGR01759 84 LLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG--NPANTNA 136 (323)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence 99875421 1221 11 11 12233444 88999886 5555544
No 385
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.52 E-value=0.044 Score=44.49 Aligned_cols=34 Identities=29% Similarity=0.458 Sum_probs=29.2
Q ss_pred CCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCC
Q 021361 144 GKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSE 177 (313)
Q Consensus 144 g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~ 177 (313)
.++|.|+|+|.+|..+|+.|...|. ++..+|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 5799999999999999999999999 588887643
No 386
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.41 E-value=0.32 Score=45.71 Aligned_cols=97 Identities=13% Similarity=0.184 Sum_probs=61.1
Q ss_pred CEEEEEcC-ChhHHHHHHHHHhcCC-------cEEEECCCC--ccccc---------------ccccCCHHHHHhhCCee
Q 021361 145 KSVGIVGL-GRIGTAIAKRVEAFGC-------PISYHSRSE--KSDAN---------------YKYYTNIIDLASNCQIL 199 (313)
Q Consensus 145 ~~vgiiG~-G~iG~~~a~~l~~~g~-------~V~~~~~~~--~~~~~---------------~~~~~~l~~l~~~aDvv 199 (313)
.+|+|+|. |.+|..+|..|...|. ++..+|+.. +...+ .....+..+.+++||+|
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV 80 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA 80 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence 37999999 9999999999886553 388888875 32211 01114567899999999
Q ss_pred EEecCCCh---Hhhh-cc--CH-------HHHhhc-CCCcEEEEcCCCCccCHHHHHH
Q 021361 200 IVACSLTE---ETHH-IV--NR-------KVIDAL-GPSGILINIGRGAHIDEPELVS 243 (313)
Q Consensus 200 ~l~~p~~~---~t~~-~i--~~-------~~l~~m-k~ga~~in~~rg~~vd~~al~~ 243 (313)
++..-... .++. ++ |. ..++.. +|++++|.++ .++|.-+.+-
T Consensus 81 VitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~~ 136 (323)
T cd00704 81 ILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNALIA 136 (323)
T ss_pred EEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHHHHH
Confidence 98764321 1221 11 11 123334 5888888885 6666555433
No 387
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=94.40 E-value=0.074 Score=46.95 Aligned_cols=60 Identities=12% Similarity=0.204 Sum_probs=47.0
Q ss_pred EEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccc-------cccc-------ccCCHHHHHhhCCeeEEecCCC
Q 021361 147 VGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSD-------ANYK-------YYTNIIDLASNCQILIVACSLT 206 (313)
Q Consensus 147 vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~-------~~~~-------~~~~l~~l~~~aDvv~l~~p~~ 206 (313)
|.|+|. |.+|+.+++.|...+++|.+..|...+. .+.. ...++.+.++.+|.|++++|..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence 678996 9999999999999999999988876431 1221 1246777899999999999953
No 388
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=94.39 E-value=0.24 Score=46.93 Aligned_cols=105 Identities=12% Similarity=0.060 Sum_probs=67.9
Q ss_pred CEEEEEcCChhHHHHHHHHHhc--CCcE-EEECCCCccc------ccccccCCHHHHHhhCCeeEEecCCC-h-Hhhhcc
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAF--GCPI-SYHSRSEKSD------ANYKYYTNIIDLASNCQILIVACSLT-E-ETHHIV 213 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~--g~~V-~~~~~~~~~~------~~~~~~~~l~~l~~~aDvv~l~~p~~-~-~t~~~i 213 (313)
.+|||||. .+|+.-++.++.. ++++ .++|+..++. .+...+.++++++++.|++++++|.+ + ....-+
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~ 82 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSAL 82 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHH
Confidence 68999999 6899999988875 4775 4678876542 23345789999999999999999752 2 222222
Q ss_pred CHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEE
Q 021361 214 NRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGA 253 (313)
Q Consensus 214 ~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga 253 (313)
. .+.|+.|.-++.=---..-+.++|+++.++.++...
T Consensus 83 a---~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 83 A---RALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred H---HHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 2 233455543332211124566678888877766633
No 389
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=94.39 E-value=0.36 Score=45.08 Aligned_cols=106 Identities=19% Similarity=0.310 Sum_probs=63.5
Q ss_pred CEEEEEcC-ChhHHHHHHHHHhcCCc--EEEECCCC--cccc-------------c--ccc--cCCHHHHHhhCCeeEEe
Q 021361 145 KSVGIVGL-GRIGTAIAKRVEAFGCP--ISYHSRSE--KSDA-------------N--YKY--YTNIIDLASNCQILIVA 202 (313)
Q Consensus 145 ~~vgiiG~-G~iG~~~a~~l~~~g~~--V~~~~~~~--~~~~-------------~--~~~--~~~l~~l~~~aDvv~l~ 202 (313)
.+|+|+|. |.+|..++..|...|.. |..+|+.. +... + ... ..+. +.+++||+|+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEe
Confidence 47999998 99999999999988864 88889844 2110 0 011 1244 459999999999
Q ss_pred cCCChH---hh-hc-------cC--HHHHhhcCCCcEEEEcCCCCccCHHHHHHH----HHhCCceEE
Q 021361 203 CSLTEE---TH-HI-------VN--RKVIDALGPSGILINIGRGAHIDEPELVSA----LLEGRLAGA 253 (313)
Q Consensus 203 ~p~~~~---t~-~~-------i~--~~~l~~mk~ga~~in~~rg~~vd~~al~~a----l~~g~~~ga 253 (313)
...... ++ .+ +. ...+....+++++|+++ .++|.-..+-. +...++.|.
T Consensus 80 ag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~--npvd~~t~~~~~~~g~~~~~viG~ 145 (309)
T cd05294 80 AGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVT--NPVDVMTYKALKESGFDKNRVFGL 145 (309)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC--CchHHHHHHHHHhcCCCHHHEeec
Confidence 863221 11 11 11 11234445677888776 55554443222 334455555
No 390
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.38 E-value=0.087 Score=38.56 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=31.6
Q ss_pred EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc
Q 021361 146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD 180 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~ 180 (313)
++.|||.|.+|-.+|..|+.+|.+|+.+.+.+...
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 58999999999999999999999999998877644
No 391
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=94.09 E-value=0.23 Score=47.13 Aligned_cols=85 Identities=25% Similarity=0.410 Sum_probs=54.0
Q ss_pred CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc------cccccc---CC---HHHHHhhCCeeEEecCCChHhh
Q 021361 143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD------ANYKYY---TN---IIDLASNCQILIVACSLTEETH 210 (313)
Q Consensus 143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------~~~~~~---~~---l~~l~~~aDvv~l~~p~~~~t~ 210 (313)
.|++|.|.|.|.+|..+++.++.+|.+|++.+.+.++. .++... .+ +.++....|+++-++... .+
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~~-~~- 260 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSAV-HA- 260 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCCH-HH-
Confidence 58899999999999999999999999987766554321 122111 11 222223467777665421 11
Q ss_pred hccCHHHHhhcCCCcEEEEcCC
Q 021361 211 HIVNRKVIDALGPSGILINIGR 232 (313)
Q Consensus 211 ~~i~~~~l~~mk~ga~~in~~r 232 (313)
+ ...++.++++..++.+|.
T Consensus 261 --~-~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 261 --L-GPLLGLLKVNGKLITLGL 279 (360)
T ss_pred --H-HHHHHHhcCCcEEEEeCC
Confidence 1 235666788888877764
No 392
>PRK14851 hypothetical protein; Provisional
Probab=94.05 E-value=0.13 Score=53.23 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=31.5
Q ss_pred cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECC
Q 021361 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSR 175 (313)
Q Consensus 140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~ 175 (313)
..|++++|+|+|+|.+|..+++.|...|. ++..+|.
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~ 75 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADF 75 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcC
Confidence 46899999999999999999999999998 4666663
No 393
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=94.05 E-value=0.11 Score=53.33 Aligned_cols=84 Identities=20% Similarity=0.249 Sum_probs=57.3
Q ss_pred CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccc----cCCHHHH----HhhCCeeEEecCCChHhh
Q 021361 144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKY----YTNIIDL----ASNCQILIVACSLTEETH 210 (313)
Q Consensus 144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~----~~~l~~l----~~~aDvv~l~~p~~~~t~ 210 (313)
.++|-|+|+|++|+.+++.|...|.++.+.|.+++.. .+... .++.+-+ ++++|.++++++.++.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 4689999999999999999999999999999877532 22211 1233322 458999999997665555
Q ss_pred hccCHHHHhhcCCCcEEEE
Q 021361 211 HIVNRKVIDALGPSGILIN 229 (313)
Q Consensus 211 ~~i~~~~l~~mk~ga~~in 229 (313)
.++ ...+.+.|+..++-
T Consensus 480 ~i~--~~ar~~~p~~~iia 496 (621)
T PRK03562 480 QLV--ELVKEHFPHLQIIA 496 (621)
T ss_pred HHH--HHHHHhCCCCeEEE
Confidence 432 23444556655544
No 394
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=94.04 E-value=0.21 Score=46.22 Aligned_cols=88 Identities=17% Similarity=0.225 Sum_probs=57.3
Q ss_pred EEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcc-------------ccc-----------------cc-------ccC
Q 021361 146 SVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKS-------------DAN-----------------YK-------YYT 187 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~-------------~~~-----------------~~-------~~~ 187 (313)
+|.|||.|.+|..+++.|...|. ++.++|...-. ..+ .. ...
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 58999999999999999999998 47777743210 000 00 011
Q ss_pred CHHHHHhhCCeeEEecCCChHhhhccCHHHHhhc-----CCCcEEEEcCCCC
Q 021361 188 NIIDLASNCQILIVACSLTEETHHIVNRKVIDAL-----GPSGILINIGRGA 234 (313)
Q Consensus 188 ~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~m-----k~ga~~in~~rg~ 234 (313)
..++++++.|+|+.++- +.+++..+++...... +.+.-+|..|..+
T Consensus 81 ~~~~f~~~fdvVi~alD-n~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G 131 (291)
T cd01488 81 KDEEFYRQFNIIICGLD-SIEARRWINGTLVSLLLYEDPESIIPLIDGGTEG 131 (291)
T ss_pred hhHHHhcCCCEEEECCC-CHHHHHHHHHHHHHhccccccccCccEEEEEEcc
Confidence 23578889999888764 5567777777555443 2335577776544
No 395
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=94.03 E-value=0.16 Score=47.60 Aligned_cols=76 Identities=17% Similarity=0.215 Sum_probs=50.7
Q ss_pred CEEEEEc-CChhHHHHHHHHHhcCC-cEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhh-c
Q 021361 145 KSVGIVG-LGRIGTAIAKRVEAFGC-PISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDA-L 221 (313)
Q Consensus 145 ~~vgiiG-~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~-m 221 (313)
.+|+||| .|-.|+.+.++|..... ++.....+..... ...++.++++|++++++|.... . +.... .
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~~-----~~~~~~~~~~DvvFlalp~~~s-~-----~~~~~~~ 71 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKDA-----AARRELLNAADVAILCLPDDAA-R-----EAVALID 71 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCcc-----cCchhhhcCCCEEEECCCHHHH-H-----HHHHHHH
Confidence 4799999 79999999999987653 5555443332211 2345667889999999985322 2 22222 2
Q ss_pred CCCcEEEEcC
Q 021361 222 GPSGILINIG 231 (313)
Q Consensus 222 k~ga~~in~~ 231 (313)
+.|..+||.|
T Consensus 72 ~~g~~VIDlS 81 (313)
T PRK11863 72 NPATRVIDAS 81 (313)
T ss_pred hCCCEEEECC
Confidence 4688889888
No 396
>PRK05442 malate dehydrogenase; Provisional
Probab=93.99 E-value=0.46 Score=44.77 Aligned_cols=97 Identities=9% Similarity=0.130 Sum_probs=59.8
Q ss_pred CEEEEEcC-ChhHHHHHHHHHhcCC-------cEEEECCCCcc--ccc---------------ccccCCHHHHHhhCCee
Q 021361 145 KSVGIVGL-GRIGTAIAKRVEAFGC-------PISYHSRSEKS--DAN---------------YKYYTNIIDLASNCQIL 199 (313)
Q Consensus 145 ~~vgiiG~-G~iG~~~a~~l~~~g~-------~V~~~~~~~~~--~~~---------------~~~~~~l~~l~~~aDvv 199 (313)
++|+|||. |.+|..+|-.|...|. ++..+|..... ..+ .....+..+.+++||+|
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV 84 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA 84 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence 48999998 9999999998875443 68888875421 111 11123556889999999
Q ss_pred EEecCCCh---Hhhh-cc--C----HH---HHhh-cCCCcEEEEcCCCCccCHHHHHH
Q 021361 200 IVACSLTE---ETHH-IV--N----RK---VIDA-LGPSGILINIGRGAHIDEPELVS 243 (313)
Q Consensus 200 ~l~~p~~~---~t~~-~i--~----~~---~l~~-mk~ga~~in~~rg~~vd~~al~~ 243 (313)
+++.-... .++. ++ | ++ .+.. .++.+++|.++ .++|.-..+-
T Consensus 85 VitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t~v~ 140 (326)
T PRK05442 85 LLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNALIA 140 (326)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHHHHH
Confidence 99775321 1221 11 1 11 2222 44688999987 5666555333
No 397
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=93.97 E-value=2.4 Score=42.83 Aligned_cols=188 Identities=19% Similarity=0.196 Sum_probs=120.9
Q ss_pred cCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHh--
Q 021361 88 DKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEA-- 165 (313)
Q Consensus 88 ~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~-- 165 (313)
+..|++.|..- .+ +|-.+++-+++..|- .++.|...+|.|+|.|..|-.+|+.+..
T Consensus 287 r~~i~~FnDDi-QG--TaaV~lAgll~A~r~-------------------~g~~l~d~riv~~GAGsAgigia~ll~~~~ 344 (581)
T PLN03129 287 RTTHLCFNDDI-QG--TAAVALAGLLAALRA-------------------TGGDLADQRILFAGAGEAGTGIAELIALAM 344 (581)
T ss_pred ccCCCEecccc-ch--HHHHHHHHHHHHHHH-------------------hCCchhhceEEEECCCHHHHHHHHHHHHHH
Confidence 45788888743 33 677788888887773 2456889999999999999999999876
Q ss_pred ---cCC-------cEEEECCCCc----ccc---c--------ccccCCHHHHHhh--CCeeEEecCCChHhhhccCHHHH
Q 021361 166 ---FGC-------PISYHSRSEK----SDA---N--------YKYYTNIIDLASN--CQILIVACSLTEETHHIVNRKVI 218 (313)
Q Consensus 166 ---~g~-------~V~~~~~~~~----~~~---~--------~~~~~~l~~l~~~--aDvv~l~~p~~~~t~~~i~~~~l 218 (313)
.|. +++.+|+..- ... . .....++.|+++. .|+++=.. ...+.+.++.+
T Consensus 345 ~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~Ft~evi 420 (581)
T PLN03129 345 SRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLS----GVGGTFTKEVL 420 (581)
T ss_pred HhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEec----CCCCCCCHHHH
Confidence 476 6888887541 100 0 1123589999998 89777533 22368999999
Q ss_pred hhcC---CCcEEEEcCCCCccCHHHHHHHHH--hCCceEEEccCCCCCCCCC-------cccCCCCcEEEcCCCCCCcHH
Q 021361 219 DALG---PSGILINIGRGAHIDEPELVSALL--EGRLAGAGLDVYENEPEVP-------EQMLGLNNVVLLPHVGSDTEE 286 (313)
Q Consensus 219 ~~mk---~ga~~in~~rg~~vd~~al~~al~--~g~~~ga~lDV~~~EP~~~-------~~l~~~pnvi~TPHia~~t~~ 286 (313)
+.|. +..++.=.|.....-|-.-.++.+ +|+...|. .-|.++ ...-+..|+++=|=++-..-.
T Consensus 421 ~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~T~G~ai~At-----GSPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~ 495 (581)
T PLN03129 421 EAMASLNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFAS-----GSPFDPVEYNGKTFHPGQANNAYIFPGIGLGALL 495 (581)
T ss_pred HHHHhcCCCCEEEECCCCCCCcCcCHHHHHHhhcCCEEEEe-----CCCCCCeeeCCeeecCccccceeeccchhhHHHh
Confidence 9995 788988888765433333333333 46644331 122211 124466789999987633222
Q ss_pred H-----HHHHHHHHHHHHHHHHcCC
Q 021361 287 T-----SKAMADLVIENLVAHFSNK 306 (313)
Q Consensus 287 ~-----~~~~~~~~~~ni~~~~~g~ 306 (313)
+ .+.|...+++-|-.+..-+
T Consensus 496 ~~a~~Itd~m~~aAA~aLA~~v~~~ 520 (581)
T PLN03129 496 SGAIRVTDDMLLAAAEALAAQVTEE 520 (581)
T ss_pred cCCcCCCHHHHHHHHHHHHHhCCcc
Confidence 2 2556666666666555433
No 398
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=93.96 E-value=0.23 Score=48.30 Aligned_cols=103 Identities=14% Similarity=0.207 Sum_probs=67.1
Q ss_pred EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----------cccccc--CCHHHHHhhCCeeEEecCCC---hHh
Q 021361 146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----------ANYKYY--TNIIDLASNCQILIVACSLT---EET 209 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----------~~~~~~--~~l~~l~~~aDvv~l~~p~~---~~t 209 (313)
++.|||+|.+|.++|+.|+..|++|.++|...... .+.... .+ .+.+.++|+|+..-... |..
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~ 79 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV 79 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence 47899999999999999999999999999754311 122211 23 44567899887754332 221
Q ss_pred h-------hccCH-HHH-hhcCCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 021361 210 H-------HIVNR-KVI-DALGPSGILINIGRGAHIDEPELVSALLEGR 249 (313)
Q Consensus 210 ~-------~~i~~-~~l-~~mk~ga~~in~~rg~~vd~~al~~al~~g~ 249 (313)
. .++.+ +++ ..++.-.+-|.-+.|+.--..-+...|+...
T Consensus 80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g 128 (433)
T TIGR01087 80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG 128 (433)
T ss_pred HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 1 13333 233 3334345666666899888888888887644
No 399
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=93.96 E-value=0.31 Score=45.58 Aligned_cols=83 Identities=19% Similarity=0.202 Sum_probs=54.5
Q ss_pred EEEEEcCChhHHHHHHHHHhcCCc-EEEECCCCccc-------------cc-----------------cc------ccCC
Q 021361 146 SVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRSEKSD-------------AN-----------------YK------YYTN 188 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~~~~~-------------~~-----------------~~------~~~~ 188 (313)
+|.|||+|.+|..+++.|...|.. +..+|...-.. .+ .. ...+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 589999999999999999999984 77777543110 00 00 0111
Q ss_pred ---HHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCC
Q 021361 189 ---IIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGR 232 (313)
Q Consensus 189 ---l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~r 232 (313)
..+.+++.|+|+.++ .+.+.+..+++.... .+.-+|+.+.
T Consensus 81 ~~~~~~f~~~~DvVv~a~-Dn~~ar~~in~~c~~---~~ip~I~~gt 123 (312)
T cd01489 81 PDFNVEFFKQFDLVFNAL-DNLAARRHVNKMCLA---ADVPLIESGT 123 (312)
T ss_pred ccchHHHHhcCCEEEECC-CCHHHHHHHHHHHHH---CCCCEEEEec
Confidence 347788999888877 456667677765433 2345677654
No 400
>PLN00106 malate dehydrogenase
Probab=93.91 E-value=0.17 Score=47.54 Aligned_cols=92 Identities=14% Similarity=0.256 Sum_probs=58.7
Q ss_pred CCCEEEEEcC-ChhHHHHHHHHHhcCC--cEEEECCCCccc---c----c--cc-----ccCCHHHHHhhCCeeEEecCC
Q 021361 143 SGKSVGIVGL-GRIGTAIAKRVEAFGC--PISYHSRSEKSD---A----N--YK-----YYTNIIDLASNCQILIVACSL 205 (313)
Q Consensus 143 ~g~~vgiiG~-G~iG~~~a~~l~~~g~--~V~~~~~~~~~~---~----~--~~-----~~~~l~~l~~~aDvv~l~~p~ 205 (313)
..+||+|||. |.+|..+|..|...+. ++..+|...... . . .. ...++.+.+++||+|+++.-.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV 96 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence 3469999999 9999999999985554 688888765110 0 0 01 123457889999999997654
Q ss_pred ChH---hhh-cc--C----H---HHHhhcCCCcEEEEcCCCC
Q 021361 206 TEE---THH-IV--N----R---KVIDALGPSGILINIGRGA 234 (313)
Q Consensus 206 ~~~---t~~-~i--~----~---~~l~~mk~ga~~in~~rg~ 234 (313)
... ++. ++ | . +.+....|++++++++-.-
T Consensus 97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv 138 (323)
T PLN00106 97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV 138 (323)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 221 111 11 1 1 2333455789999985433
No 401
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=93.91 E-value=0.28 Score=45.26 Aligned_cols=64 Identities=22% Similarity=0.225 Sum_probs=44.3
Q ss_pred CEEEEEcCChhHHHHHHHHHh-cCCcEE-EECCCCccc-------cccc-ccCCHHHHHh--hCCeeEEecCCChH
Q 021361 145 KSVGIVGLGRIGTAIAKRVEA-FGCPIS-YHSRSEKSD-------ANYK-YYTNIIDLAS--NCQILIVACSLTEE 208 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~-~g~~V~-~~~~~~~~~-------~~~~-~~~~l~~l~~--~aDvv~l~~p~~~~ 208 (313)
.+|||||.|.||+..+..+.. -++++. ++++.+++. .+.. .+.+.+++++ +.|+|++++|...+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H 77 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAH 77 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHH
Confidence 379999999999988766654 466764 567655431 2222 2457888886 57889999986544
No 402
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=93.90 E-value=0.16 Score=45.30 Aligned_cols=38 Identities=21% Similarity=0.387 Sum_probs=34.1
Q ss_pred ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361 141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK 178 (313)
Q Consensus 141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~ 178 (313)
.+.||++.|.|. |.||+.+++.|...|++|...+|+..
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~ 45 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPA 45 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 478999999996 89999999999999999999888754
No 403
>PRK08265 short chain dehydrogenase; Provisional
Probab=93.89 E-value=0.25 Score=44.42 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=34.2
Q ss_pred ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361 141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK 178 (313)
Q Consensus 141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~ 178 (313)
.++||++-|.|. |.||+.+|+.|...|++|++.+|+.+
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 41 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD 41 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 478999999997 89999999999999999999988754
No 404
>PRK06523 short chain dehydrogenase; Provisional
Probab=93.83 E-value=0.4 Score=42.72 Aligned_cols=40 Identities=25% Similarity=0.281 Sum_probs=35.0
Q ss_pred ccccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361 139 GSKFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK 178 (313)
Q Consensus 139 ~~~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~ 178 (313)
...++||++.|.|. |.||+.+++.|...|++|+..+|+..
T Consensus 4 ~~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~ 44 (260)
T PRK06523 4 FLELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRP 44 (260)
T ss_pred CcCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChh
Confidence 34688999999996 79999999999999999999888654
No 405
>PLN02214 cinnamoyl-CoA reductase
Probab=93.82 E-value=0.19 Score=47.33 Aligned_cols=64 Identities=20% Similarity=0.263 Sum_probs=47.5
Q ss_pred ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccc------------cccc-------ccCCHHHHHhhCCeeE
Q 021361 141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSD------------ANYK-------YYTNIIDLASNCQILI 200 (313)
Q Consensus 141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~------------~~~~-------~~~~l~~l~~~aDvv~ 200 (313)
.+++++|.|.|. |.||+.+++.|...|++|.+..|+.+.. .... ...+++++++.+|+|+
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 86 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF 86 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence 367899999998 9999999999999999999888764321 0011 1134667788899887
Q ss_pred EecC
Q 021361 201 VACS 204 (313)
Q Consensus 201 l~~p 204 (313)
-+..
T Consensus 87 h~A~ 90 (342)
T PLN02214 87 HTAS 90 (342)
T ss_pred EecC
Confidence 7664
No 406
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=93.81 E-value=0.36 Score=47.30 Aligned_cols=97 Identities=11% Similarity=0.152 Sum_probs=62.0
Q ss_pred CEEEEEcC-ChhHHHHHHHHHhc-------CC--cEEEECCCCccccc---------------ccccCCHHHHHhhCCee
Q 021361 145 KSVGIVGL-GRIGTAIAKRVEAF-------GC--PISYHSRSEKSDAN---------------YKYYTNIIDLASNCQIL 199 (313)
Q Consensus 145 ~~vgiiG~-G~iG~~~a~~l~~~-------g~--~V~~~~~~~~~~~~---------------~~~~~~l~~l~~~aDvv 199 (313)
.+|+|||. |.+|..+|-.|... |. +++.+|+..+...+ .....+..+.+++||+|
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiV 180 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWA 180 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEE
Confidence 58999999 99999999988765 44 68888887654311 11123456889999999
Q ss_pred EEecCCCh---Hhh-hcc--C-------HHHHhh-cCCCcEEEEcCCCCccCHHHHHH
Q 021361 200 IVACSLTE---ETH-HIV--N-------RKVIDA-LGPSGILINIGRGAHIDEPELVS 243 (313)
Q Consensus 200 ~l~~p~~~---~t~-~~i--~-------~~~l~~-mk~ga~~in~~rg~~vd~~al~~ 243 (313)
++..-... .++ .++ | ...+.. ..+++++|.++ .++|.-..+-
T Consensus 181 VitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v~ 236 (444)
T PLN00112 181 LLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALIC 236 (444)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHHH
Confidence 99775421 111 111 1 123344 46788998876 5555555443
No 407
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=93.79 E-value=5.1 Score=40.34 Aligned_cols=213 Identities=15% Similarity=0.136 Sum_probs=132.1
Q ss_pred hcCCCceEEEEcCCCCCc-CChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccc
Q 021361 63 DSLPTLEIVASYSVGLDK-IDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSK 141 (313)
Q Consensus 63 ~~~~~Lk~i~~~~~G~d~-id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~ 141 (313)
..+|+ -+|+.-=-+..+ +.+..-.+..|++.|..- . .+|-.+++-+|+..|- .++.
T Consensus 238 ~~~P~-~~Iq~EDf~~~naf~iL~kyr~~i~~FnDDi-Q--GTaaV~lAgll~Alr~-------------------~g~~ 294 (559)
T PTZ00317 238 SRWPN-AVVQFEDFSNNHCFDLLERYQNKYRCFNDDI-Q--GTGAVIAAGFLNALKL-------------------SGVP 294 (559)
T ss_pred HhCCC-eEEehhhcCCccHHHHHHHhccCCCEecccc-h--hHHHHHHHHHHHHHHH-------------------hCCC
Confidence 34677 366665444444 333333334589988743 3 3677788889988773 2456
Q ss_pred cCCCEEEEEcCChhHHHHHHHHHh----cCC-------cEEEECCCCc----c---ccc-----c-----cc---cCCHH
Q 021361 142 FSGKSVGIVGLGRIGTAIAKRVEA----FGC-------PISYHSRSEK----S---DAN-----Y-----KY---YTNII 190 (313)
Q Consensus 142 l~g~~vgiiG~G~iG~~~a~~l~~----~g~-------~V~~~~~~~~----~---~~~-----~-----~~---~~~l~ 190 (313)
|...+|.|+|.|..|-.+|+.+.. .|. +++.+|+..- . ... + .. ..++.
T Consensus 295 l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~ 374 (559)
T PTZ00317 295 PEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLE 374 (559)
T ss_pred hhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHH
Confidence 889999999999999999998873 687 6888886531 0 000 0 11 34899
Q ss_pred HHHhhC--CeeEEecCCChHhhhccCHHHHhhcCC---CcEEEEcCCCCccCHHHHHHHHH--hCCceEEEccCCCCCCC
Q 021361 191 DLASNC--QILIVACSLTEETHHIVNRKVIDALGP---SGILINIGRGAHIDEPELVSALL--EGRLAGAGLDVYENEPE 263 (313)
Q Consensus 191 ~l~~~a--Dvv~l~~p~~~~t~~~i~~~~l~~mk~---ga~~in~~rg~~vd~~al~~al~--~g~~~ga~lDV~~~EP~ 263 (313)
|+++.. |+++=+. ...+.+.++.++.|.+ ..++.=.|.....-|-.-.++.+ +|+...|. -..-+|.
T Consensus 375 e~v~~~KPtvLIG~S----~~~g~Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~T~Grai~At--Gspf~pv 448 (559)
T PTZ00317 375 DVVRFVKPTALLGLS----GVGGVFTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWTNGRAIVAS--GSPFPPV 448 (559)
T ss_pred HHHhccCCCEEEEec----CCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhhccCCEEEEE--CCCCCCc
Confidence 999988 8777533 2246889999999874 88999888776544444444443 56644331 1111221
Q ss_pred C-Cc---ccCCCCcEEEcCCCCCCcHH-----HHHHHHHHHHHHHHHHHc
Q 021361 264 V-PE---QMLGLNNVVLLPHVGSDTEE-----TSKAMADLVIENLVAHFS 304 (313)
Q Consensus 264 ~-~~---~l~~~pnvi~TPHia~~t~~-----~~~~~~~~~~~ni~~~~~ 304 (313)
. +. ..-+..|+++=|=++-..-. -.+.|...+++-+-.+..
T Consensus 449 ~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v~ 498 (559)
T PTZ00317 449 TLNGKTIQPSQGNNLYVFPGVGLGCAIAQPSYIPDEMLIAAAASLATLVS 498 (559)
T ss_pred ccCCeeeccCcCcceeeccchhhhhHhhcccCCCHHHHHHHHHHHHhhCC
Confidence 1 11 24466799999977632222 235566666666655554
No 408
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=93.79 E-value=0.19 Score=46.35 Aligned_cols=62 Identities=18% Similarity=0.239 Sum_probs=45.1
Q ss_pred CCCEEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCccc---------c----ccc-------ccCCHHHHHhhCCeeEE
Q 021361 143 SGKSVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEKSD---------A----NYK-------YYTNIIDLASNCQILIV 201 (313)
Q Consensus 143 ~g~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~---------~----~~~-------~~~~l~~l~~~aDvv~l 201 (313)
+|++|.|.| .|-||+.+++.|...|++|.+..|..... . ... ....++++++.+|+|+.
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 378999999 69999999999999999998877654321 0 001 11346677888998877
Q ss_pred ecC
Q 021361 202 ACS 204 (313)
Q Consensus 202 ~~p 204 (313)
+..
T Consensus 83 ~A~ 85 (322)
T PLN02662 83 TAS 85 (322)
T ss_pred eCC
Confidence 654
No 409
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=93.71 E-value=0.57 Score=44.28 Aligned_cols=62 Identities=6% Similarity=0.018 Sum_probs=46.2
Q ss_pred c-CCCEEEEEcCC-------hhHHHHHHHHHhcCCcEEEECC-CCccc--------------cc--ccccCCHHHHHhhC
Q 021361 142 F-SGKSVGIVGLG-------RIGTAIAKRVEAFGCPISYHSR-SEKSD--------------AN--YKYYTNIIDLASNC 196 (313)
Q Consensus 142 l-~g~~vgiiG~G-------~iG~~~a~~l~~~g~~V~~~~~-~~~~~--------------~~--~~~~~~l~~l~~~a 196 (313)
+ .|++|+|+|.| ++.++++..+..+|++|.+..| ..-.. .+ .....++++.++++
T Consensus 166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~a 245 (335)
T PRK04523 166 TLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAGA 245 (335)
T ss_pred ccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 5 68999776543 7888999999999999999888 32110 01 22357899999999
Q ss_pred CeeEEec
Q 021361 197 QILIVAC 203 (313)
Q Consensus 197 Dvv~l~~ 203 (313)
|+|..-.
T Consensus 246 Dvvy~~~ 252 (335)
T PRK04523 246 DVVYAKS 252 (335)
T ss_pred CEEEece
Confidence 9998743
No 410
>PTZ00325 malate dehydrogenase; Provisional
Probab=93.70 E-value=0.16 Score=47.73 Aligned_cols=64 Identities=13% Similarity=0.187 Sum_probs=44.5
Q ss_pred cCCCEEEEEcC-ChhHHHHHHHHHhcC--CcEEEECCCCccc---c------cccc--cC---CHHHHHhhCCeeEEecC
Q 021361 142 FSGKSVGIVGL-GRIGTAIAKRVEAFG--CPISYHSRSEKSD---A------NYKY--YT---NIIDLASNCQILIVACS 204 (313)
Q Consensus 142 l~g~~vgiiG~-G~iG~~~a~~l~~~g--~~V~~~~~~~~~~---~------~~~~--~~---~l~~l~~~aDvv~l~~p 204 (313)
++.++|+|||. |.+|..+|..|...+ .++..+|+..... . .... .. +..+.++.||+|++++-
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG 85 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence 56679999999 999999999998444 5788888732110 0 0111 11 12678999999998775
Q ss_pred C
Q 021361 205 L 205 (313)
Q Consensus 205 ~ 205 (313)
.
T Consensus 86 ~ 86 (321)
T PTZ00325 86 V 86 (321)
T ss_pred C
Confidence 4
No 411
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=93.70 E-value=0.11 Score=52.39 Aligned_cols=64 Identities=14% Similarity=0.225 Sum_probs=47.2
Q ss_pred cCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcccc--------------c------ccc----c---CCHHHHH
Q 021361 142 FSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDA--------------N------YKY----Y---TNIIDLA 193 (313)
Q Consensus 142 l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~--------------~------~~~----~---~~l~~l~ 193 (313)
-.|++|.|.|. |.||+.+++.|...|++|.++.|+..... + ... . .++.+.+
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 46889999997 89999999999999999998888654210 0 110 1 2345567
Q ss_pred hhCCeeEEecCC
Q 021361 194 SNCQILIVACSL 205 (313)
Q Consensus 194 ~~aDvv~l~~p~ 205 (313)
.++|+|+.++..
T Consensus 158 ggiDiVVn~AG~ 169 (576)
T PLN03209 158 GNASVVICCIGA 169 (576)
T ss_pred cCCCEEEEcccc
Confidence 889999888753
No 412
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.69 E-value=0.2 Score=44.25 Aligned_cols=38 Identities=32% Similarity=0.513 Sum_probs=34.1
Q ss_pred ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361 141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK 178 (313)
Q Consensus 141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~ 178 (313)
+++++++.|+|. |.+|+.+++.|...|++|++.+|+..
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~ 40 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEE 40 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 367899999996 88999999999999999999999764
No 413
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=93.67 E-value=0.38 Score=44.43 Aligned_cols=38 Identities=32% Similarity=0.483 Sum_probs=33.7
Q ss_pred cccCCCEEEEEcCChhHHHHHHHHHhcCCc-EEEECCCC
Q 021361 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRSE 177 (313)
Q Consensus 140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~~ 177 (313)
+.|+..+|.|+|+|.+|..+|+.|...|.+ |..+|...
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 568999999999999999999999999985 88888654
No 414
>PRK10206 putative oxidoreductase; Provisional
Probab=93.67 E-value=0.14 Score=48.47 Aligned_cols=63 Identities=11% Similarity=0.254 Sum_probs=43.3
Q ss_pred EEEEEcCChhHHH-HHHHHHh--cCCcEE-EECCCCccc-----c-cccccCCHHHHHh--hCCeeEEecCCChH
Q 021361 146 SVGIVGLGRIGTA-IAKRVEA--FGCPIS-YHSRSEKSD-----A-NYKYYTNIIDLAS--NCQILIVACSLTEE 208 (313)
Q Consensus 146 ~vgiiG~G~iG~~-~a~~l~~--~g~~V~-~~~~~~~~~-----~-~~~~~~~l~~l~~--~aDvv~l~~p~~~~ 208 (313)
++||||+|.+++. .+..+.. -++++. ++|+.++.. . ....+.+++++++ +.|+|++++|...+
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H 77 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSH 77 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHH
Confidence 7999999998754 3454432 357764 688865322 1 1334678999996 57999999997554
No 415
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=93.64 E-value=0.59 Score=43.20 Aligned_cols=104 Identities=13% Similarity=0.149 Sum_probs=70.9
Q ss_pred CCEEEEEcC-ChhHHHHHHHHHhcCCcE-EEECCC--CcccccccccCCHHHHHhh--CCeeEEecCCChHhhhccCHHH
Q 021361 144 GKSVGIVGL-GRIGTAIAKRVEAFGCPI-SYHSRS--EKSDANYKYYTNIIDLASN--CQILIVACSLTEETHHIVNRKV 217 (313)
Q Consensus 144 g~~vgiiG~-G~iG~~~a~~l~~~g~~V-~~~~~~--~~~~~~~~~~~~l~~l~~~--aDvv~l~~p~~~~t~~~i~~~~ 217 (313)
..+|.|.|. |.+|..+-+.+...|.++ ..+++. .....+...+.+++|+... .|+.++++|. +.+...+.+ .
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~~~~~~v~G~~~y~sv~dlp~~~~~Dlavi~vpa-~~v~~~l~e-~ 83 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFDSVKEAVEETGANASVIFVPA-PFAADAIFE-A 83 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCCCCcceecCeeccCCHHHHhhccCCCEEEEecCH-HHHHHHHHH-H
Confidence 346888885 899999999999999883 446666 4445677778899999987 7999999994 333434332 2
Q ss_pred HhhcC-CCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361 218 IDALG-PSGILINIGRGAHIDEPELVSALLEGRLA 251 (313)
Q Consensus 218 l~~mk-~ga~~in~~rg~~vd~~al~~al~~g~~~ 251 (313)
.+ .. +.++++.-+-++ -+++.|.+..++..+.
T Consensus 84 ~~-~Gvk~avIis~Gf~e-~~~~~l~~~a~~~gir 116 (286)
T TIGR01019 84 ID-AGIELIVCITEGIPV-HDMLKVKRYMEESGTR 116 (286)
T ss_pred HH-CCCCEEEEECCCCCH-HHHHHHHHHHHHcCCE
Confidence 22 22 234444444333 3677888888887655
No 416
>CHL00194 ycf39 Ycf39; Provisional
Probab=93.64 E-value=0.13 Score=47.82 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=44.4
Q ss_pred EEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCccc-----cccc-------ccCCHHHHHhhCCeeEEecC
Q 021361 146 SVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYK-------YYTNIIDLASNCQILIVACS 204 (313)
Q Consensus 146 ~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~-------~~~~l~~l~~~aDvv~l~~p 204 (313)
+|.|.| .|.+|+.+++.|...|++|.+.+|+.... .+.+ ...++.++++.+|+|+.+.+
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 689999 59999999999999999999998875321 1111 12346677899998887654
No 417
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.63 E-value=0.11 Score=51.30 Aligned_cols=108 Identities=15% Similarity=0.198 Sum_probs=68.4
Q ss_pred ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc----------cccccc--CCHHHHHhhCCeeEEecCCC
Q 021361 139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD----------ANYKYY--TNIIDLASNCQILIVACSLT 206 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----------~~~~~~--~~l~~l~~~aDvv~l~~p~~ 206 (313)
+..+.+++|.|||.|.+|.++|+.|+..|++|.++|+..... .+.... .... ....+|+|+.+.-..
T Consensus 11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~-~~~~~D~Vv~s~Gi~ 89 (480)
T PRK01438 11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPT-LPEDTDLVVTSPGWR 89 (480)
T ss_pred ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc-ccCCCCEEEECCCcC
Confidence 345789999999999999999999999999999998654211 122111 1111 345689998876433
Q ss_pred hHhh----------hccCH-HHH-hhcCC----CcEEEEcCCCCccCHHHHHHHHHh
Q 021361 207 EETH----------HIVNR-KVI-DALGP----SGILINIGRGAHIDEPELVSALLE 247 (313)
Q Consensus 207 ~~t~----------~~i~~-~~l-~~mk~----ga~~in~~rg~~vd~~al~~al~~ 247 (313)
+.+. .++++ +++ ..+.+ ..+-|--+.|+.--..-+...|+.
T Consensus 90 ~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~ 146 (480)
T PRK01438 90 PDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA 146 (480)
T ss_pred CCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence 3221 13332 232 33422 235555557887777777778865
No 418
>PRK12937 short chain dehydrogenase; Provisional
Probab=93.63 E-value=0.34 Score=42.63 Aligned_cols=35 Identities=31% Similarity=0.423 Sum_probs=30.5
Q ss_pred cCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCC
Q 021361 142 FSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRS 176 (313)
Q Consensus 142 l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~ 176 (313)
+.++++.|.|. |.||+.+|+.|...|++|+...++
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~ 38 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAG 38 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC
Confidence 57899999995 999999999999999998776554
No 419
>PRK08374 homoserine dehydrogenase; Provisional
Probab=93.54 E-value=0.59 Score=44.19 Aligned_cols=114 Identities=17% Similarity=0.236 Sum_probs=64.6
Q ss_pred CEEEEEcCChhHHHHHHHHHh--------cC--CcEEE-ECCCCcc--cccc----------------cc-------cCC
Q 021361 145 KSVGIVGLGRIGTAIAKRVEA--------FG--CPISY-HSRSEKS--DANY----------------KY-------YTN 188 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~--------~g--~~V~~-~~~~~~~--~~~~----------------~~-------~~~ 188 (313)
-+|+|+|+|++|+.+++.|.. +| .+|.+ .|++... ..+. .+ ..+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 489999999999999998876 66 44443 3433210 0010 00 116
Q ss_pred HHHHH--hhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCc-cCHHHHHHHHHhCCce-EEEccCCCCCCC
Q 021361 189 IIDLA--SNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAH-IDEPELVSALLEGRLA-GAGLDVYENEPE 263 (313)
Q Consensus 189 l~~l~--~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~-vd~~al~~al~~g~~~-ga~lDV~~~EP~ 263 (313)
+++++ ..+|+|+-+.+.. ... .-..+.++.|.-+|-...|.+ ...+.|.+..++.+.. .+.-.|.-.-|.
T Consensus 83 ~~ell~~~~~DVvVd~t~~~-~a~----~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiPi 156 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDK-NAH----EWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTPI 156 (336)
T ss_pred HHHHHhcCCCCEEEECCCcH-HHH----HHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCCc
Confidence 77887 4799999777432 212 122344566666665555533 3555666665554432 244556566664
No 420
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=93.53 E-value=0.21 Score=53.81 Aligned_cols=89 Identities=12% Similarity=0.176 Sum_probs=62.1
Q ss_pred ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc--------------------------------cccc--c---
Q 021361 141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK--------------------------------SDAN--Y--- 183 (313)
Q Consensus 141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~--------------------------------~~~~--~--- 183 (313)
.+.-.++.|+|.|++|+..++.+..+|++ . .++..- ...+ +
T Consensus 200 gv~P~~vVi~G~G~Vg~gA~~i~~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~ 277 (1042)
T PLN02819 200 GICPLVFVFTGSGNVSQGAQEIFKLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKA 277 (1042)
T ss_pred CCCCeEEEEeCCchHHHHHHHHHhhcCCC-c-cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchh
Confidence 34457899999999999999999988665 1 111000 0000 0
Q ss_pred cc------c-CC-HHHHHhhCCeeEEecCCChHhhhccCHH-HHhhcCCCc----EEEEcC
Q 021361 184 KY------Y-TN-IIDLASNCQILIVACSLTEETHHIVNRK-VIDALGPSG----ILINIG 231 (313)
Q Consensus 184 ~~------~-~~-l~~l~~~aDvv~l~~p~~~~t~~~i~~~-~l~~mk~ga----~~in~~ 231 (313)
.+ + .. +++.+..+|+++.++-..+..-.++.++ ..+.||+|. +++|++
T Consensus 278 ~y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs 338 (1042)
T PLN02819 278 DYYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT 338 (1042)
T ss_pred hhccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence 00 0 11 3567889999999997777777889888 777899998 889876
No 421
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=93.51 E-value=0.25 Score=47.70 Aligned_cols=64 Identities=20% Similarity=0.207 Sum_probs=52.3
Q ss_pred cCCCEEEEEcCC----------hhHHHHHHHHHhcCCcEEEECCCCcccc--cccccCCHHHHHhhCCeeEEecCC
Q 021361 142 FSGKSVGIVGLG----------RIGTAIAKRVEAFGCPISYHSRSEKSDA--NYKYYTNIIDLASNCQILIVACSL 205 (313)
Q Consensus 142 l~g~~vgiiG~G----------~iG~~~a~~l~~~g~~V~~~~~~~~~~~--~~~~~~~l~~l~~~aDvv~l~~p~ 205 (313)
.+|++|+|+|+. +-+..+++.|...|.+|.+|||...... +.....++.++++.||+|++..-.
T Consensus 294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (388)
T PRK15057 294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDSFFNSRLERDLATFKQQADVIISNRMA 369 (388)
T ss_pred hcCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchhhcCCeeeCCHHHHHHhCCEEEEcCCc
Confidence 368999999994 4677899999999999999999754322 445678999999999999997743
No 422
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.49 E-value=0.13 Score=48.03 Aligned_cols=60 Identities=18% Similarity=0.298 Sum_probs=43.2
Q ss_pred EEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCccccc----------------ccccCCHHHHHhhCCeeEEecCC
Q 021361 146 SVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSDAN----------------YKYYTNIIDLASNCQILIVACSL 205 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~----------------~~~~~~l~~l~~~aDvv~l~~p~ 205 (313)
||+|||.|.+|..+|-.|...|. ++..+|...+...+ .....+-.+.+++||+|+++.-.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~ 78 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGP 78 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCC
Confidence 58999999999999998876665 68889986543211 01112335788999999997654
No 423
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.49 E-value=0.36 Score=47.25 Aligned_cols=105 Identities=13% Similarity=0.165 Sum_probs=66.4
Q ss_pred CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc---------cccccc--CCHHHHHhhCCeeEEecCCC---hHh
Q 021361 144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD---------ANYKYY--TNIIDLASNCQILIVACSLT---EET 209 (313)
Q Consensus 144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~---------~~~~~~--~~l~~l~~~aDvv~l~~p~~---~~t 209 (313)
+-+++|+|+|.+|.++|+.|...|++|.++|...... .+.... ..-.+.+.++|+|+.+-... |..
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~ 85 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPAL 85 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHH
Confidence 4589999999999999999999999999999754321 022221 11234466899887754222 221
Q ss_pred h-------hccCH-HHHhh-cCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 021361 210 H-------HIVNR-KVIDA-LGPSGILINIGRGAHIDEPELVSALLEG 248 (313)
Q Consensus 210 ~-------~~i~~-~~l~~-mk~ga~~in~~rg~~vd~~al~~al~~g 248 (313)
. .++.+ +.+.. ++...+-|--+.|+.--.+-+...|+..
T Consensus 86 ~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~ 133 (448)
T PRK03803 86 RAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAA 133 (448)
T ss_pred HHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhc
Confidence 1 13332 33333 3433455555678888888888888753
No 424
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=93.49 E-value=0.2 Score=53.64 Aligned_cols=66 Identities=23% Similarity=0.364 Sum_probs=53.8
Q ss_pred cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc--------------------------cccc--------ccC
Q 021361 142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD--------------------------ANYK--------YYT 187 (313)
Q Consensus 142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~--------------------------~~~~--------~~~ 187 (313)
=.|++|+|||-|..|-+.|..|...|+.|.+|.|+...- .+.. ...
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~v 1862 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKHV 1862 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccccc
Confidence 369999999999999999999999999999999876420 1111 136
Q ss_pred CHHHHHhhCCeeEEecCCCh
Q 021361 188 NIIDLASNCQILIVACSLTE 207 (313)
Q Consensus 188 ~l~~l~~~aDvv~l~~p~~~ 207 (313)
+++++.++-|.|++++-.|.
T Consensus 1863 s~d~l~~~~daiv~a~gst~ 1882 (2142)
T KOG0399|consen 1863 SLDELKKENDAIVLATGSTT 1882 (2142)
T ss_pred cHHHHhhccCeEEEEeCCCC
Confidence 89999999999999986553
No 425
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=93.48 E-value=0.33 Score=45.46 Aligned_cols=91 Identities=11% Similarity=0.231 Sum_probs=58.1
Q ss_pred EEEEEcC-ChhHHHHHHHHHhcCC--cEEEECCCCccc------cc---cccc----C-CHHHHHhhCCeeEEecCCCh-
Q 021361 146 SVGIVGL-GRIGTAIAKRVEAFGC--PISYHSRSEKSD------AN---YKYY----T-NIIDLASNCQILIVACSLTE- 207 (313)
Q Consensus 146 ~vgiiG~-G~iG~~~a~~l~~~g~--~V~~~~~~~~~~------~~---~~~~----~-~l~~l~~~aDvv~l~~p~~~- 207 (313)
||+|||. |.+|..+|-.|...+. ++..+|...... .. .... . ++.+.++.||+|+++.....
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 5899999 9999999999876664 688888765110 00 1111 1 24678999999999876421
Q ss_pred --Hhh-hcc--C-------HHHHhhcCCCcEEEEcCCCCccCH
Q 021361 208 --ETH-HIV--N-------RKVIDALGPSGILINIGRGAHIDE 238 (313)
Q Consensus 208 --~t~-~~i--~-------~~~l~~mk~ga~~in~~rg~~vd~ 238 (313)
.++ .++ | .+.+..-.|++++|+++ .++|.
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvs--NPvDv 121 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVIT--NPVNS 121 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEec--Cchhh
Confidence 111 122 1 12334457899999984 55654
No 426
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=93.38 E-value=0.25 Score=46.24 Aligned_cols=85 Identities=16% Similarity=0.191 Sum_probs=56.1
Q ss_pred CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCH-HHHHhhCCeeEEecCCChHhhhccCHH
Q 021361 143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNI-IDLASNCQILIVACSLTEETHHIVNRK 216 (313)
Q Consensus 143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l-~~l~~~aDvv~l~~p~~~~t~~~i~~~ 216 (313)
.|.+|.|.|.|.+|...++.++..|.+|++.+++.++. .++....+. ++.-...|+++.+.... . . -..
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~-~---~-~~~ 239 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG-G---L-VPP 239 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH-H---H-HHH
Confidence 47899999999999999999999999998888776532 222211111 11112357666655432 1 2 234
Q ss_pred HHhhcCCCcEEEEcCC
Q 021361 217 VIDALGPSGILINIGR 232 (313)
Q Consensus 217 ~l~~mk~ga~~in~~r 232 (313)
.++.++++..++.+|.
T Consensus 240 ~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 240 ALEALDRGGVLAVAGI 255 (329)
T ss_pred HHHhhCCCcEEEEEec
Confidence 6778899998888774
No 427
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=93.35 E-value=0.38 Score=45.21 Aligned_cols=88 Identities=15% Similarity=0.237 Sum_probs=55.6
Q ss_pred CCCEEEEEcCChhHHHHHHHHHh-cC-CcEEEECCCCcccccc---cccCCHHHHHh--hCCeeEEecCCChHhhhccCH
Q 021361 143 SGKSVGIVGLGRIGTAIAKRVEA-FG-CPISYHSRSEKSDANY---KYYTNIIDLAS--NCQILIVACSLTEETHHIVNR 215 (313)
Q Consensus 143 ~g~~vgiiG~G~iG~~~a~~l~~-~g-~~V~~~~~~~~~~~~~---~~~~~l~~l~~--~aDvv~l~~p~~~~t~~~i~~ 215 (313)
.|.+|.|+|.|.+|...++.++. +| .+|++.++++++.... ......+++.. ..|+|+-++... .+...++
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~~g~d~viD~~G~~-~~~~~~~- 240 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPEDLAVDHAFECVGGR-GSQSAIN- 240 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhccCCcEEEECCCCC-ccHHHHH-
Confidence 47899999999999999999886 54 6798888876432111 11111222222 368888777531 0111122
Q ss_pred HHHhhcCCCcEEEEcCC
Q 021361 216 KVIDALGPSGILINIGR 232 (313)
Q Consensus 216 ~~l~~mk~ga~~in~~r 232 (313)
..++.++++..++.+|-
T Consensus 241 ~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 241 QIIDYIRPQGTIGLMGV 257 (341)
T ss_pred HHHHhCcCCcEEEEEee
Confidence 35677899888888763
No 428
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=93.34 E-value=0.58 Score=44.02 Aligned_cols=93 Identities=11% Similarity=0.144 Sum_probs=57.8
Q ss_pred EEEEEcC-ChhHHHHHHHHHhcCC-------cEEEECCCCcc--ccc-------cc--------ccCCHHHHHhhCCeeE
Q 021361 146 SVGIVGL-GRIGTAIAKRVEAFGC-------PISYHSRSEKS--DAN-------YK--------YYTNIIDLASNCQILI 200 (313)
Q Consensus 146 ~vgiiG~-G~iG~~~a~~l~~~g~-------~V~~~~~~~~~--~~~-------~~--------~~~~l~~l~~~aDvv~ 200 (313)
+|+|||. |.+|..+|..|...|. ++..+|+.... ..+ .. ...+..+.+++||+|+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 5899999 9999999999987554 48888885432 111 00 0124468899999999
Q ss_pred EecCCChH---hh-hccC---------HHHHhhc-CCCcEEEEcCCCCccCHHH
Q 021361 201 VACSLTEE---TH-HIVN---------RKVIDAL-GPSGILINIGRGAHIDEPE 240 (313)
Q Consensus 201 l~~p~~~~---t~-~~i~---------~~~l~~m-k~ga~~in~~rg~~vd~~a 240 (313)
+..-.... ++ .++. ...+... ++++++|.++ .++|.-.
T Consensus 81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~t 132 (324)
T TIGR01758 81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTNA 132 (324)
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence 87654211 11 1221 1223334 5788888876 5555544
No 429
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=93.27 E-value=0.19 Score=47.36 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=32.4
Q ss_pred cCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCC
Q 021361 142 FSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSE 177 (313)
Q Consensus 142 l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~ 177 (313)
+++++|.|.|. |-||+.+++.|...|.+|+++++..
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~ 49 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFS 49 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 56799999995 9999999999999999999998754
No 430
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=93.14 E-value=0.5 Score=45.21 Aligned_cols=35 Identities=43% Similarity=0.646 Sum_probs=31.5
Q ss_pred CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCC
Q 021361 143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE 177 (313)
Q Consensus 143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~ 177 (313)
.|.+|.|.|.|.+|..+++.++.+|.+|++.+++.
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~ 212 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS 212 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh
Confidence 58899999999999999999999999988877654
No 431
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.13 E-value=0.46 Score=42.66 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=32.9
Q ss_pred ccCCCEEEEEcCC---hhHHHHHHHHHhcCCcEEEECCCC
Q 021361 141 KFSGKSVGIVGLG---RIGTAIAKRVEAFGCPISYHSRSE 177 (313)
Q Consensus 141 ~l~g~~vgiiG~G---~iG~~~a~~l~~~g~~V~~~~~~~ 177 (313)
.++||++.|.|.+ .||+++|+.|...|++|+..+|+.
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~ 46 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLND 46 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence 4789999999986 799999999999999998887764
No 432
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.12 E-value=0.12 Score=45.59 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=33.7
Q ss_pred cCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361 142 FSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK 178 (313)
Q Consensus 142 l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~ 178 (313)
++|+++.|.|. |.||+.+++.|...|++|+..+|+..
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~ 40 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQE 40 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 67999999998 99999999999999999998888753
No 433
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=93.12 E-value=0.29 Score=45.33 Aligned_cols=62 Identities=24% Similarity=0.260 Sum_probs=44.5
Q ss_pred CCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccc---------c----ccc-------ccCCHHHHHhhCCeeEE
Q 021361 143 SGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSD---------A----NYK-------YYTNIIDLASNCQILIV 201 (313)
Q Consensus 143 ~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~---------~----~~~-------~~~~l~~l~~~aDvv~l 201 (313)
.||++.|.|. |.||+.+++.|...|++|.+..|+.... . ... ...+++++++++|+|+.
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih 83 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH 83 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence 3789999995 9999999999999999998776554311 0 011 12346677888998877
Q ss_pred ecC
Q 021361 202 ACS 204 (313)
Q Consensus 202 ~~p 204 (313)
+..
T Consensus 84 ~A~ 86 (325)
T PLN02989 84 TAS 86 (325)
T ss_pred eCC
Confidence 764
No 434
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=93.11 E-value=0.2 Score=46.35 Aligned_cols=92 Identities=14% Similarity=0.260 Sum_probs=66.9
Q ss_pred ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----cc--------------cccc----------CCH
Q 021361 139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----AN--------------YKYY----------TNI 189 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~--------------~~~~----------~~l 189 (313)
+-...+.++-++|+|.+|-..+...+..|+-|..++-.+... .+ +-.. .-+
T Consensus 159 agtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~ 238 (356)
T COG3288 159 AGTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELV 238 (356)
T ss_pred cccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHH
Confidence 445778889999999999999999999999998888654221 01 1100 114
Q ss_pred HHHHhhCCeeEEec--CCChHhhhccCHHHHhhcCCCcEEEEcC
Q 021361 190 IDLASNCQILIVAC--SLTEETHHIVNRKVIDALGPSGILINIG 231 (313)
Q Consensus 190 ~~l~~~aDvv~l~~--p~~~~t~~~i~~~~l~~mk~ga~~in~~ 231 (313)
.+.+++.|+|+... |..+. -.++.++..+.||||+++||.+
T Consensus 239 a~~~~~~DivITTAlIPGrpA-P~Lvt~~mv~sMkpGSViVDlA 281 (356)
T COG3288 239 AEQAKEVDIVITTALIPGRPA-PKLVTAEMVASMKPGSVIVDLA 281 (356)
T ss_pred HHHhcCCCEEEEecccCCCCC-chhhHHHHHHhcCCCcEEEEeh
Confidence 45678899988753 33332 3378899999999999999974
No 435
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=93.09 E-value=0.22 Score=46.85 Aligned_cols=29 Identities=28% Similarity=0.457 Sum_probs=23.6
Q ss_pred EEEEEcCChhHHHHHHHHHhcC----CcEEEEC
Q 021361 146 SVGIVGLGRIGTAIAKRVEAFG----CPISYHS 174 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~g----~~V~~~~ 174 (313)
+|||+|+|+||+.+.+.|...+ ++|...+
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaIn 33 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALN 33 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEe
Confidence 5899999999999999987653 6776554
No 436
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=93.09 E-value=0.21 Score=48.15 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=34.6
Q ss_pred ccccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCC
Q 021361 139 GSKFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSE 177 (313)
Q Consensus 139 ~~~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~ 177 (313)
++...|++|.|+|. |.||+.+++.|...|++|.+++|..
T Consensus 55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~ 94 (390)
T PLN02657 55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK 94 (390)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence 45567899999997 9999999999999999999988865
No 437
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=93.02 E-value=0.23 Score=45.95 Aligned_cols=117 Identities=14% Similarity=0.174 Sum_probs=72.8
Q ss_pred HhhcC-CCceEEEEcCCCCCcCChhhhhcCCc-EEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCccc
Q 021361 61 LIDSL-PTLEIVASYSVGLDKIDLDKCKDKAV-RVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFEL 138 (313)
Q Consensus 61 ~l~~~-~~Lk~i~~~~~G~d~id~~~~~~~gI-~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~ 138 (313)
.++.+ ++.=+|=+...|+-++ ++..-++ +|.|+.+....-=. .++.=++...+. .
T Consensus 97 tl~ayg~D~iViRH~~egaa~~---~a~~~~~~pvINaGDG~~qHPT-Q~LLDl~TI~~~-------------------~ 153 (316)
T COG0540 97 TLSAYGVDAIVIRHPEEGAARL---LAEFSGVNPVINAGDGSHQHPT-QALLDLYTIREE-------------------F 153 (316)
T ss_pred HHHhhCCCEEEEeCccccHHHH---HHHhcCCCceEECCCCCCCCcc-HHHHHHHHHHHH-------------------h
Confidence 44444 5555555566666654 2222356 79997654332111 222222222221 2
Q ss_pred ccccCCCEEEEEc---CChhHHHHHHHHHhcCCcEEEECCCCccc----------cc-c-cccCCHHHHHhhCCeeEE
Q 021361 139 GSKFSGKSVGIVG---LGRIGTAIAKRVEAFGCPISYHSRSEKSD----------AN-Y-KYYTNIIDLASNCQILIV 201 (313)
Q Consensus 139 ~~~l~g~~vgiiG---~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----------~~-~-~~~~~l~~l~~~aDvv~l 201 (313)
|+ +.|++|+|+| +|+..++.++.|+.||.+|..+.|..-.. .+ . ......++.+.++|++.+
T Consensus 154 G~-~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~ 230 (316)
T COG0540 154 GR-LDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVVEHDSDEEVIEEADVLYM 230 (316)
T ss_pred CC-cCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCCchhHHHHHhhcCceEEEecchhhhhccCCEEEe
Confidence 22 8899999999 89999999999999999999998864222 11 1 223455669999998865
No 438
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=93.00 E-value=0.28 Score=44.13 Aligned_cols=87 Identities=18% Similarity=0.229 Sum_probs=57.4
Q ss_pred CCCEEEEEcCChhHHHHHHHHHhcCCc-EEEECCCCcccc-----c-ccccCC-HHHH--HhhCCeeEEecCCChHhhhc
Q 021361 143 SGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRSEKSDA-----N-YKYYTN-IIDL--ASNCQILIVACSLTEETHHI 212 (313)
Q Consensus 143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~~~~~~-----~-~~~~~~-l~~l--~~~aDvv~l~~p~~~~t~~~ 212 (313)
.|.++.|.|.|.+|..+++.++..|.+ |++.+++.++.. + ...... .+.. -...|+++.++....
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~----- 171 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGSPS----- 171 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCChH-----
Confidence 478999999999999999999999999 888877654321 1 110000 1111 124787777654322
Q ss_pred cCHHHHhhcCCCcEEEEcCCCC
Q 021361 213 VNRKVIDALGPSGILINIGRGA 234 (313)
Q Consensus 213 i~~~~l~~mk~ga~~in~~rg~ 234 (313)
.-...++.+++++.++++|-.+
T Consensus 172 ~~~~~~~~l~~~g~~~~~g~~~ 193 (277)
T cd08255 172 ALETALRLLRDRGRVVLVGWYG 193 (277)
T ss_pred HHHHHHHHhcCCcEEEEEeccC
Confidence 1234677899999999987543
No 439
>PRK08324 short chain dehydrogenase; Validated
Probab=92.96 E-value=0.22 Score=51.56 Aligned_cols=39 Identities=33% Similarity=0.456 Sum_probs=35.1
Q ss_pred cccCCCEEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361 140 SKFSGKSVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEK 178 (313)
Q Consensus 140 ~~l~g~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~ 178 (313)
+.+.||++.|.| .|.||+.+++.|...|++|+..+|+..
T Consensus 418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~ 457 (681)
T PRK08324 418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEE 457 (681)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHH
Confidence 457899999999 599999999999999999999998764
No 440
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=92.94 E-value=0.24 Score=46.10 Aligned_cols=83 Identities=17% Similarity=0.257 Sum_probs=54.0
Q ss_pred EEcCChhHHHHHHHHHhcCC--cEEEECCCCccccc---------------ccccCCHHHHHhhCCeeEEecCCCh---H
Q 021361 149 IVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSDAN---------------YKYYTNIIDLASNCQILIVACSLTE---E 208 (313)
Q Consensus 149 iiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~---------------~~~~~~l~~l~~~aDvv~l~~p~~~---~ 208 (313)
|||.|.+|..+|..|...+. ++..+|...+...+ .....+-.+.+++||+|+++.-... .
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk~g~ 80 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGE 80 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCCCCC
Confidence 69999999999999987665 68999986643211 1112244578899999999765421 1
Q ss_pred hh--------hccC--HHHHhhcCCCcEEEEcC
Q 021361 209 TH--------HIVN--RKVIDALGPSGILINIG 231 (313)
Q Consensus 209 t~--------~~i~--~~~l~~mk~ga~~in~~ 231 (313)
++ .++. .+.+....|.+++++++
T Consensus 81 ~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs 113 (299)
T TIGR01771 81 TRLELVGRNVRIMKSIVPEVVKSGFDGIFLVAT 113 (299)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 11 1111 12334457889999886
No 441
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=92.92 E-value=0.17 Score=47.31 Aligned_cols=64 Identities=14% Similarity=0.220 Sum_probs=45.1
Q ss_pred CEEEEEcCChhHHHHHHHHHhc--CCcEEEECCCCcccccc---------------cccC-CHHHHHhhCCeeEEec--C
Q 021361 145 KSVGIVGLGRIGTAIAKRVEAF--GCPISYHSRSEKSDANY---------------KYYT-NIIDLASNCQILIVAC--S 204 (313)
Q Consensus 145 ~~vgiiG~G~iG~~~a~~l~~~--g~~V~~~~~~~~~~~~~---------------~~~~-~l~~l~~~aDvv~l~~--p 204 (313)
++|+|||.|.+|+.+|-.|... +-++..+|...+...+. .... +-.+.++.||+|+++. |
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~p 80 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGVP 80 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCCCC
Confidence 4899999999999999999644 44788999885432220 0111 1256788999999988 5
Q ss_pred CChH
Q 021361 205 LTEE 208 (313)
Q Consensus 205 ~~~~ 208 (313)
..|.
T Consensus 81 rKpG 84 (313)
T COG0039 81 RKPG 84 (313)
T ss_pred CCCC
Confidence 5554
No 442
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=92.91 E-value=0.61 Score=43.40 Aligned_cols=85 Identities=21% Similarity=0.315 Sum_probs=54.8
Q ss_pred CCCEEEEEcCChhHHHHHHHHHhcCCc-EEEECCCCccc-----ccccc---c--CCHHH---HHh--hCCeeEEecCCC
Q 021361 143 SGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRSEKSD-----ANYKY---Y--TNIID---LAS--NCQILIVACSLT 206 (313)
Q Consensus 143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~~~~~-----~~~~~---~--~~l~~---l~~--~aDvv~l~~p~~ 206 (313)
.|.+|.|+|.|.+|..+++.++.+|++ |++.+++.++. .++.. . .+.++ +.. ..|+++-+....
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~~ 242 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGNT 242 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCCH
Confidence 488999999999999999999999999 98888765432 11111 0 11122 222 367777665421
Q ss_pred hHhhhccCHHHHhhcCCCcEEEEcCC
Q 021361 207 EETHHIVNRKVIDALGPSGILINIGR 232 (313)
Q Consensus 207 ~~t~~~i~~~~l~~mk~ga~~in~~r 232 (313)
. . ....+..+++++.++.+|.
T Consensus 243 -~---~-~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 243 -A---A-RRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred -H---H-HHHHHHHhhcCCEEEEEcC
Confidence 1 1 1234666788888777764
No 443
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=92.84 E-value=0.25 Score=44.90 Aligned_cols=61 Identities=20% Similarity=0.165 Sum_probs=44.8
Q ss_pred EEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcccc--cc-------cccCCHHHHH------hh-CCeeEEecCCC
Q 021361 146 SVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDA--NY-------KYYTNIIDLA------SN-CQILIVACSLT 206 (313)
Q Consensus 146 ~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~--~~-------~~~~~l~~l~------~~-aDvv~l~~p~~ 206 (313)
+|.|+|. |.+|+.+++.|...|++|.+..|++++.. +. ....++.+++ +. +|.|+++.|..
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~ 78 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPI 78 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCC
Confidence 3678887 99999999999999999999998875321 11 1123455666 45 89999888754
No 444
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=92.83 E-value=0.99 Score=42.06 Aligned_cols=88 Identities=13% Similarity=0.201 Sum_probs=56.6
Q ss_pred cCCCEEEEEcCC-hhHHHHHHHHHhcCCcEEEECCCCcccc--------------ccc--ccCCHHHHHhhCCeeEEecC
Q 021361 142 FSGKSVGIVGLG-RIGTAIAKRVEAFGCPISYHSRSEKSDA--------------NYK--YYTNIIDLASNCQILIVACS 204 (313)
Q Consensus 142 l~g~~vgiiG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~--------------~~~--~~~~l~~l~~~aDvv~l~~p 204 (313)
+.|++|+++|=+ ++.++++..+..+|++|.+..|..-... +.. ...+. +.++++|+|..-.-
T Consensus 145 l~g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~-~a~~~aDvvy~~~w 223 (302)
T PRK14805 145 VSKVKLAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTSDI-EAIEGHDAIYTDTW 223 (302)
T ss_pred cCCcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEcCH-HHHCCCCEEEeece
Confidence 789999999984 5678889999999999998887542211 111 23554 56899999987331
Q ss_pred C---C----hHh-----hhccCHHHHhhcCCCcEEEEcC
Q 021361 205 L---T----EET-----HHIVNRKVIDALGPSGILINIG 231 (313)
Q Consensus 205 ~---~----~~t-----~~~i~~~~l~~mk~ga~~in~~ 231 (313)
. . +.. ..-++++.++.+|++ +|..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~y~vt~~~l~~a~~~-~vmH~l 261 (302)
T PRK14805 224 ISMGDDTPLAEIKAKFAPYQVNKALMEKAGAT-FVMHCQ 261 (302)
T ss_pred EeCCCccccHHHHHhccCCcCCHHHHhcCCCC-eEECCC
Confidence 0 0 111 134456666666654 555544
No 445
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=92.80 E-value=0.12 Score=44.99 Aligned_cols=37 Identities=30% Similarity=0.436 Sum_probs=33.0
Q ss_pred cccCCCEEEEEcCChhHHHHHHHHHhcCCc-EEEECCC
Q 021361 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRS 176 (313)
Q Consensus 140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~ 176 (313)
+.|++.+|.|||+|.+|..+++.|...|.. +..+|..
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 468999999999999999999999999985 7777754
No 446
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=92.80 E-value=0.41 Score=45.46 Aligned_cols=85 Identities=16% Similarity=0.192 Sum_probs=55.2
Q ss_pred CCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccc-----cccccc-----CCHHHHHh-----hCCeeEEecCCC
Q 021361 143 SGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSD-----ANYKYY-----TNIIDLAS-----NCQILIVACSLT 206 (313)
Q Consensus 143 ~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~-----~~~~~~-----~~l~~l~~-----~aDvv~l~~p~~ 206 (313)
.|.+|.|.|.|.+|..+++.++..|+ +|++.++++++. .++... .+..+.+. ..|+++-++...
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~ 270 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGSV 270 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCCh
Confidence 47899999999999999999999999 588888766432 122110 11111111 368877766432
Q ss_pred hHhhhccCHHHHhhcCCCcEEEEcCC
Q 021361 207 EETHHIVNRKVIDALGPSGILINIGR 232 (313)
Q Consensus 207 ~~t~~~i~~~~l~~mk~ga~~in~~r 232 (313)
.. -...++.++++..++.+|-
T Consensus 271 ~~-----~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 271 PA-----LETAYEITRRGGTTVTAGL 291 (371)
T ss_pred HH-----HHHHHHHHhcCCEEEEEcc
Confidence 21 1234667888888888764
No 447
>PLN02427 UDP-apiose/xylose synthase
Probab=92.77 E-value=0.26 Score=47.11 Aligned_cols=65 Identities=11% Similarity=0.176 Sum_probs=46.8
Q ss_pred ccccCCCEEEEEcC-ChhHHHHHHHHHhc-CCcEEEECCCCccc-----c-------cccc-------cCCHHHHHhhCC
Q 021361 139 GSKFSGKSVGIVGL-GRIGTAIAKRVEAF-GCPISYHSRSEKSD-----A-------NYKY-------YTNIIDLASNCQ 197 (313)
Q Consensus 139 ~~~l~g~~vgiiG~-G~iG~~~a~~l~~~-g~~V~~~~~~~~~~-----~-------~~~~-------~~~l~~l~~~aD 197 (313)
|+.+..++|.|.|. |-||+.+++.|... |++|.+++++.... . ..+. ..+++++++++|
T Consensus 9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d 88 (386)
T PLN02427 9 GKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMAD 88 (386)
T ss_pred CCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCC
Confidence 56778889999995 99999999999987 58999998764321 0 1111 124566788899
Q ss_pred eeEEec
Q 021361 198 ILIVAC 203 (313)
Q Consensus 198 vv~l~~ 203 (313)
+|+-+.
T Consensus 89 ~ViHlA 94 (386)
T PLN02427 89 LTINLA 94 (386)
T ss_pred EEEEcc
Confidence 876655
No 448
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=92.75 E-value=0.26 Score=47.08 Aligned_cols=61 Identities=18% Similarity=0.251 Sum_probs=43.6
Q ss_pred CCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccc-c----cccc----c---CCHHHHHhhCCeeEEec
Q 021361 143 SGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSD-A----NYKY----Y---TNIIDLASNCQILIVAC 203 (313)
Q Consensus 143 ~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~-~----~~~~----~---~~l~~l~~~aDvv~l~~ 203 (313)
.+++|.|.|. |-||+.+++.|...|++|.+.+|..... . .... . .++..+++++|+|+-+.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A 93 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA 93 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence 5689999998 9999999999999999999998754211 0 0110 1 22344567899887665
No 449
>PRK06701 short chain dehydrogenase; Provisional
Probab=92.72 E-value=0.41 Score=43.95 Aligned_cols=38 Identities=32% Similarity=0.307 Sum_probs=33.5
Q ss_pred cccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCC
Q 021361 140 SKFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSE 177 (313)
Q Consensus 140 ~~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~ 177 (313)
..+.||++.|.|. |.||..+++.|...|++|..++++.
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~ 80 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDE 80 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4688999999995 7899999999999999998888764
No 450
>PRK09186 flagellin modification protein A; Provisional
Probab=92.69 E-value=0.26 Score=43.71 Aligned_cols=37 Identities=27% Similarity=0.408 Sum_probs=32.9
Q ss_pred cCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361 142 FSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK 178 (313)
Q Consensus 142 l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~ 178 (313)
++||++.|.|. |.||+.+|+.|...|++|.+.+|+.+
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~ 39 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKE 39 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChH
Confidence 57899999997 78999999999999999998887653
No 451
>PRK08264 short chain dehydrogenase; Validated
Probab=92.69 E-value=0.29 Score=42.94 Aligned_cols=39 Identities=28% Similarity=0.382 Sum_probs=34.1
Q ss_pred ccCCCEEEEEcC-ChhHHHHHHHHHhcCC-cEEEECCCCcc
Q 021361 141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGC-PISYHSRSEKS 179 (313)
Q Consensus 141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~-~V~~~~~~~~~ 179 (313)
++.++++.|+|. |.+|+.+|+.|...|+ +|...+|+.+.
T Consensus 3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~ 43 (238)
T PRK08264 3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPES 43 (238)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhh
Confidence 367899999995 9999999999999999 99999887643
No 452
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.67 E-value=0.53 Score=44.02 Aligned_cols=90 Identities=11% Similarity=0.257 Sum_probs=58.2
Q ss_pred EEEEEcC-ChhHHHHHHHHHhcCC--cEEEECCCCccc--------c-c-cccc-----CCHHHHHhhCCeeEEecCCCh
Q 021361 146 SVGIVGL-GRIGTAIAKRVEAFGC--PISYHSRSEKSD--------A-N-YKYY-----TNIIDLASNCQILIVACSLTE 207 (313)
Q Consensus 146 ~vgiiG~-G~iG~~~a~~l~~~g~--~V~~~~~~~~~~--------~-~-~~~~-----~~l~~l~~~aDvv~l~~p~~~ 207 (313)
+|+|||. |.+|..+|-.|...|. ++..+|.. ... . . .... .++.+.+++||+|+++.-...
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~-~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~ 80 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV-NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR 80 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC-ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence 7999999 9999999999987774 68888876 211 0 0 1111 123578999999999875422
Q ss_pred ---Hhhh-cc--C-------HHHHhhcCCCcEEEEcCCCCccCH
Q 021361 208 ---ETHH-IV--N-------RKVIDALGPSGILINIGRGAHIDE 238 (313)
Q Consensus 208 ---~t~~-~i--~-------~~~l~~mk~ga~~in~~rg~~vd~ 238 (313)
.++. ++ | .+.+....|++++|+++ .++|.
T Consensus 81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvt--NPvDv 122 (310)
T cd01337 81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIIS--NPVNS 122 (310)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc--Cchhh
Confidence 1221 22 1 12334456899999985 44554
No 453
>PRK05884 short chain dehydrogenase; Provisional
Probab=92.64 E-value=0.39 Score=42.16 Aligned_cols=33 Identities=18% Similarity=0.234 Sum_probs=28.6
Q ss_pred EEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361 146 SVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK 178 (313)
Q Consensus 146 ~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~ 178 (313)
++.|.|. |.||+.+++.|...|++|+..+|+.+
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~ 35 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRD 35 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 5778876 89999999999999999999888754
No 454
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=92.61 E-value=0.41 Score=45.05 Aligned_cols=36 Identities=19% Similarity=0.383 Sum_probs=32.5
Q ss_pred CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361 143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK 178 (313)
Q Consensus 143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~ 178 (313)
.|.+|.|+|.|.+|..+++.++..|.+|++.+++++
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~ 201 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPE 201 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHH
Confidence 478999999999999999999999999988887654
No 455
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=92.59 E-value=0.28 Score=43.17 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=34.3
Q ss_pred cccCCCEEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361 140 SKFSGKSVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEK 178 (313)
Q Consensus 140 ~~l~g~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~ 178 (313)
+.+.++++.|.| .|.+|+.+++.|...|++|++.+|+..
T Consensus 2 ~~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~ 41 (251)
T PRK12826 2 RDLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGD 41 (251)
T ss_pred CCCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 346789999999 699999999999999999999988753
No 456
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=92.57 E-value=0.3 Score=48.71 Aligned_cols=137 Identities=18% Similarity=0.221 Sum_probs=89.6
Q ss_pred ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361 139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV 217 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~ 217 (313)
+..+.|+..-|+|-.. +|..++..|+.....|..+-.. ..++.+.+.++|+|+.++-- .+++-.+
T Consensus 157 ~v~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSK---------T~~lae~v~~ADIvIvAiG~----PefVKgd- 222 (935)
T KOG4230|consen 157 GVFVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHSK---------TRNLAEKVSRADIVIVAIGQ----PEFVKGD- 222 (935)
T ss_pred CCccccceeEEEecccccCChHHHHHHhcCceEEEecCC---------CccHHHHhccCCEEEEEcCC----cceeecc-
Confidence 4468999999999887 5899999999988888876432 24799999999999998843 3445443
Q ss_pred HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHH
Q 021361 218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIE 297 (313)
Q Consensus 218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ 297 (313)
.+|||+++|++|---+-|... ++|.- ..=||-.++-. +. --.+||-=||.-.=+..-+.+.+++
T Consensus 223 --WiKpGavVIDvGINyvpD~~K-----ksg~k--lvGDVdfe~Ak---ev----as~ITPVPGGVGPMTVAMLmqNtve 286 (935)
T KOG4230|consen 223 --WIKPGAVVIDVGINYVPDPSK-----KSGFK--LVGDVDFESAK---EV----ASFITPVPGGVGPMTVAMLMQNTVE 286 (935)
T ss_pred --cccCCcEEEEccccccCCCCC-----cccce--EeeecchHhhh---hh----hhccccCCCCcchHHHHHHHHHHHH
Confidence 468999999998654443221 22322 24466333321 00 1357887777655555445555555
Q ss_pred HHHHHHcC
Q 021361 298 NLVAHFSN 305 (313)
Q Consensus 298 ni~~~~~g 305 (313)
.-.|++.+
T Consensus 287 aAKR~r~e 294 (935)
T KOG4230|consen 287 AAKRQREE 294 (935)
T ss_pred HHHHHHHh
Confidence 55565554
No 457
>PRK06153 hypothetical protein; Provisional
Probab=92.51 E-value=0.12 Score=49.49 Aligned_cols=36 Identities=28% Similarity=0.455 Sum_probs=32.2
Q ss_pred ccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCC
Q 021361 141 KFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRS 176 (313)
Q Consensus 141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~ 176 (313)
.|++++|+|||+|.+|..++..|.+.|. ++..+|..
T Consensus 173 kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 173 KLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred HHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 6899999999999999999999999998 57777743
No 458
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=92.50 E-value=0.57 Score=43.69 Aligned_cols=85 Identities=26% Similarity=0.418 Sum_probs=52.8
Q ss_pred CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc-----cccc---cCC---HHHHHhhCCeeEEecCCChHhhh
Q 021361 143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA-----NYKY---YTN---IIDLASNCQILIVACSLTEETHH 211 (313)
Q Consensus 143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-----~~~~---~~~---l~~l~~~aDvv~l~~p~~~~t~~ 211 (313)
.|.++.|.|.|.+|+.+++.++.+|++|++.+++.+... +... ..+ ..+.-...|+++-+.+...
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~~---- 244 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSASH---- 244 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCcc----
Confidence 467999999999999999999999999988887654211 1110 001 1112234666666555321
Q ss_pred ccCHHHHhhcCCCcEEEEcCC
Q 021361 212 IVNRKVIDALGPSGILINIGR 232 (313)
Q Consensus 212 ~i~~~~l~~mk~ga~~in~~r 232 (313)
.....++.+++++.++++|.
T Consensus 245 -~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 245 -DLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred -hHHHHHHHhcCCCEEEEEec
Confidence 12334566666667776654
No 459
>PRK05717 oxidoreductase; Validated
Probab=92.47 E-value=0.57 Score=41.72 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=33.4
Q ss_pred ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCC
Q 021361 141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSE 177 (313)
Q Consensus 141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~ 177 (313)
.+.||++.|.|. |.||+.+|+.|...|++|...+++.
T Consensus 7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~ 44 (255)
T PRK05717 7 GHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR 44 (255)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH
Confidence 578999999996 8999999999999999999888764
No 460
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=92.46 E-value=1.1 Score=41.54 Aligned_cols=90 Identities=13% Similarity=0.253 Sum_probs=67.4
Q ss_pred cCCCEEEEEcCC-hhHHHHHHHHHhcCCcEEEECCCCccc--------------cc--ccccCCHHHHHhhCCeeEEecC
Q 021361 142 FSGKSVGIVGLG-RIGTAIAKRVEAFGCPISYHSRSEKSD--------------AN--YKYYTNIIDLASNCQILIVACS 204 (313)
Q Consensus 142 l~g~~vgiiG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~--------------~~--~~~~~~l~~l~~~aDvv~l~~p 204 (313)
|+|+|+..+|=| +++.++......+||+|.+..|..-.. .+ .....++++.++.+|+|..=+.
T Consensus 151 l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~eAv~gADvvyTDvW 230 (310)
T COG0078 151 LKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDVW 230 (310)
T ss_pred ccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHHHhCCCCEEEecCc
Confidence 899999999977 588999999999999998877754321 11 2345799999999999986544
Q ss_pred CC--hHhh-----------hccCHHHHhhcCCCcEEEEcC
Q 021361 205 LT--EETH-----------HIVNRKVIDALGPSGILINIG 231 (313)
Q Consensus 205 ~~--~~t~-----------~~i~~~~l~~mk~ga~~in~~ 231 (313)
.. .+.+ .-++.+.++..+++++|..|-
T Consensus 231 vSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHCL 270 (310)
T COG0078 231 VSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHCL 270 (310)
T ss_pred ccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeCC
Confidence 21 1111 456788888888888888875
No 461
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.46 E-value=0.46 Score=42.45 Aligned_cols=36 Identities=22% Similarity=0.434 Sum_probs=32.5
Q ss_pred ccCCCEEEEEcCC---hhHHHHHHHHHhcCCcEEEECCC
Q 021361 141 KFSGKSVGIVGLG---RIGTAIAKRVEAFGCPISYHSRS 176 (313)
Q Consensus 141 ~l~g~~vgiiG~G---~iG~~~a~~l~~~g~~V~~~~~~ 176 (313)
.+.||++.|.|.+ .||+++|+.|...|++|+..+|+
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~ 42 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN 42 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc
Confidence 3789999999986 89999999999999999888775
No 462
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=92.46 E-value=0.22 Score=48.36 Aligned_cols=64 Identities=22% Similarity=0.384 Sum_probs=47.1
Q ss_pred ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcccc--------ccc-------ccCCHHHHHhhCCeeEEecC
Q 021361 141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDA--------NYK-------YYTNIIDLASNCQILIVACS 204 (313)
Q Consensus 141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~--------~~~-------~~~~l~~l~~~aDvv~l~~p 204 (313)
.++||++.|.|. |.||+++++.|...|++|.+.+|+.+... ... ...++.+.+.+.|+++.+..
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnAG 254 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINHG 254 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECCC
Confidence 578999999998 89999999999999999998887653210 000 01234556778999987653
No 463
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=92.45 E-value=0.26 Score=44.27 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=30.9
Q ss_pred ccCCCEEEEEcC---ChhHHHHHHHHHhcCCcEEEECCC
Q 021361 141 KFSGKSVGIVGL---GRIGTAIAKRVEAFGCPISYHSRS 176 (313)
Q Consensus 141 ~l~g~~vgiiG~---G~iG~~~a~~l~~~g~~V~~~~~~ 176 (313)
++.||++-|.|. +.||+++|+.|...|++|+...++
T Consensus 3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~ 41 (258)
T PRK07370 3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLP 41 (258)
T ss_pred ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecC
Confidence 468999999997 489999999999999998766543
No 464
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=92.41 E-value=0.57 Score=44.22 Aligned_cols=85 Identities=21% Similarity=0.292 Sum_probs=53.4
Q ss_pred CCCEEEEEcCChhHHHHHHHHHhcCCc-EEEECCCCccc-----ccccc-----cCCHHH----HHh--hCCeeEEecCC
Q 021361 143 SGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRSEKSD-----ANYKY-----YTNIID----LAS--NCQILIVACSL 205 (313)
Q Consensus 143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~~~~~-----~~~~~-----~~~l~~----l~~--~aDvv~l~~p~ 205 (313)
.|.+|.|.|.|.+|...++.++..|.+ |++.+++.++. .+... ..+..+ +.. ..|+|+-++..
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g~ 255 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVGR 255 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECCCC
Confidence 478999999999999999999999996 88887765432 11110 011111 221 36777765542
Q ss_pred ChHhhhccCHHHHhhcCCCcEEEEcCC
Q 021361 206 TEETHHIVNRKVIDALGPSGILINIGR 232 (313)
Q Consensus 206 ~~~t~~~i~~~~l~~mk~ga~~in~~r 232 (313)
+.+ + ...+..++++..+|.+|-
T Consensus 256 -~~~---~-~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 256 -PET---Y-KQAFYARDLAGTVVLVGV 277 (358)
T ss_pred -HHH---H-HHHHHHhccCCEEEEECC
Confidence 111 1 224566777887777764
No 465
>PRK12367 short chain dehydrogenase; Provisional
Probab=92.39 E-value=0.25 Score=44.30 Aligned_cols=65 Identities=23% Similarity=0.380 Sum_probs=46.8
Q ss_pred cccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccc-----cc----c--c--ccCCHHHHHhhCCeeEEecC
Q 021361 140 SKFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSD-----AN----Y--K--YYTNIIDLASNCQILIVACS 204 (313)
Q Consensus 140 ~~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~----~--~--~~~~l~~l~~~aDvv~l~~p 204 (313)
..++||++.|.|. |.||+.+|+.|...|++|++.+|+.... .. . . ...+.++.+.+.|+++.+..
T Consensus 10 ~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~iDilVnnAG 88 (245)
T PRK12367 10 STWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDKQLASLDVLILNHG 88 (245)
T ss_pred HhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHHhcCCCCEEEECCc
Confidence 3578999999997 6799999999999999999888765111 00 0 0 01234456677999988774
No 466
>PRK06841 short chain dehydrogenase; Provisional
Probab=92.39 E-value=0.54 Score=41.73 Aligned_cols=38 Identities=37% Similarity=0.460 Sum_probs=34.0
Q ss_pred ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361 141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK 178 (313)
Q Consensus 141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~ 178 (313)
.+.||++.|.|. |.||..+|+.|...|++|+..+|+..
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~ 50 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSED 50 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 478999999995 99999999999999999998888653
No 467
>PRK06196 oxidoreductase; Provisional
Probab=92.39 E-value=0.34 Score=44.95 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=34.0
Q ss_pred ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361 141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK 178 (313)
Q Consensus 141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~ 178 (313)
.+.||++.|.|. |.||+.+++.|...|++|++.+|+.+
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~ 61 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPD 61 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 478999999998 78999999999999999999888754
No 468
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.36 E-value=0.21 Score=48.79 Aligned_cols=106 Identities=14% Similarity=0.094 Sum_probs=65.5
Q ss_pred cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc------cccccc--CCHHHHHhhCCeeEEecCCChHhh---
Q 021361 142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD------ANYKYY--TNIIDLASNCQILIVACSLTEETH--- 210 (313)
Q Consensus 142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------~~~~~~--~~l~~l~~~aDvv~l~~p~~~~t~--- 210 (313)
+.+++|.|+|+|..|.+.++.|+..|++|.++|...... .+.... ....+.++..|+|+..-...++..
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~ 83 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVASPGIALAHPSLS 83 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEECCCCCCCCHHHH
Confidence 468899999999999999999999999999999654321 121111 112345667886665432222211
Q ss_pred -------hccCH-HHHhhc-CCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361 211 -------HIVNR-KVIDAL-GPSGILINIGRGAHIDEPELVSALLE 247 (313)
Q Consensus 211 -------~~i~~-~~l~~m-k~ga~~in~~rg~~vd~~al~~al~~ 247 (313)
.++.+ +.+..+ +.-.+-|--+.|+.--.+-|...|+.
T Consensus 84 ~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 129 (438)
T PRK03806 84 AAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA 129 (438)
T ss_pred HHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 12222 333333 32344455557888888888888875
No 469
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=92.35 E-value=0.28 Score=44.48 Aligned_cols=57 Identities=12% Similarity=0.208 Sum_probs=42.3
Q ss_pred EEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhC--CeeEEecCC
Q 021361 146 SVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNC--QILIVACSL 205 (313)
Q Consensus 146 ~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~a--Dvv~l~~p~ 205 (313)
+|.|+|. |.+|+.+++.|...|++|.+.+|... ......++.++++.+ |+|+.+...
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~---d~~~~~~~~~~~~~~~~d~vi~~a~~ 60 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQL---DLTDPEALERLLRAIRPDAVVNTAAY 60 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCccc---CCCCHHHHHHHHHhCCCCEEEECCcc
Confidence 4788995 99999999999999999999988621 111223566677765 988876653
No 470
>PRK14852 hypothetical protein; Provisional
Probab=92.29 E-value=0.33 Score=51.70 Aligned_cols=160 Identities=12% Similarity=0.084 Sum_probs=88.5
Q ss_pred cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcc-------------ccc-------------------cc--
Q 021361 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKS-------------DAN-------------------YK-- 184 (313)
Q Consensus 140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~-------------~~~-------------------~~-- 184 (313)
..|+.++|+|||+|.+|..+++.|...|. ++...|...-. ..+ ..
T Consensus 328 ~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~ 407 (989)
T PRK14852 328 RRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSF 407 (989)
T ss_pred HHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEE
Confidence 36899999999999999999999999998 46666532210 000 00
Q ss_pred ----ccCCHHHHHhhCCeeEEecCC-ChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCC
Q 021361 185 ----YYTNIIDLASNCQILIVACSL-TEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYE 259 (313)
Q Consensus 185 ----~~~~l~~l~~~aDvv~l~~p~-~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~ 259 (313)
...+.+++++++|+|+-++-. .-+.+..++... .+.+.-+|..+-.+..-.-.. ....|. ..-|.|+
T Consensus 408 ~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c---~~~~IP~I~ag~~G~~g~v~v--~~p~~~---~~~~~f~ 479 (989)
T PRK14852 408 PEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRA---LELGIPVITAGPLGYSCALLV--FMPGGM---NFDSYFG 479 (989)
T ss_pred ecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHH---HHcCCCEEEeeccccCeeEEE--EcCCCC---CHHHhCC
Confidence 014577888999999987743 112333333322 233444555443110000000 000000 0011222
Q ss_pred CCC-----------------CCCc-ccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 021361 260 NEP-----------------EVPE-QMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKP 307 (313)
Q Consensus 260 ~EP-----------------~~~~-~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~ 307 (313)
-|| .+-+ ..++..++-+.=+.+-++.-+..-....+.....+++-|+.
T Consensus 480 ~~~~~p~~~~~~~~~l~~~p~~~~~~~~~~~~~~l~~~~~Ps~~~~~~l~a~~~~~~~~killg~~ 545 (989)
T PRK14852 480 IDDDTPPMEGYLRFGMGLAPRPAHLGYMDRRFVSLHDRRGPSLDIACHLCAGMAATEAVRILLHRR 545 (989)
T ss_pred CCCCCchHhhhhhhhccCCcchhhhcccCcccccccccCCCchHHHHHHhHHHHHHHHHHHHhCCC
Confidence 222 1111 23345566555566666666777788889999999999883
No 471
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=92.28 E-value=0.29 Score=46.11 Aligned_cols=66 Identities=14% Similarity=0.210 Sum_probs=47.0
Q ss_pred ccccCCCEEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCcccc----------cccc-------cCCHHHHHhhCCeeE
Q 021361 139 GSKFSGKSVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEKSDA----------NYKY-------YTNIIDLASNCQILI 200 (313)
Q Consensus 139 ~~~l~g~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----------~~~~-------~~~l~~l~~~aDvv~ 200 (313)
+++-++++|.|.| .|-||+.+++.|...|++|++.+|...... .... ...+++++++.|+|+
T Consensus 5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 84 (353)
T PLN02896 5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVF 84 (353)
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence 5677899999999 599999999999999999988777543210 1111 123556677788776
Q ss_pred EecC
Q 021361 201 VACS 204 (313)
Q Consensus 201 l~~p 204 (313)
-+..
T Consensus 85 h~A~ 88 (353)
T PLN02896 85 HVAA 88 (353)
T ss_pred ECCc
Confidence 6554
No 472
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.25 E-value=0.17 Score=45.23 Aligned_cols=120 Identities=18% Similarity=0.273 Sum_probs=72.1
Q ss_pred cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcc-------------ccc-----------------cc----
Q 021361 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKS-------------DAN-----------------YK---- 184 (313)
Q Consensus 140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~-------------~~~-----------------~~---- 184 (313)
..|++++|.|+|+|.+|..+++.|...|. +++.+|...-. ..+ .+
T Consensus 7 ~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~ 86 (231)
T cd00755 7 EKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAV 86 (231)
T ss_pred HHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEe
Confidence 35889999999999999999999999998 57777753210 000 00
Q ss_pred --c--cCCHHHHHh-hCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCH-----------------HHHH
Q 021361 185 --Y--YTNIIDLAS-NCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDE-----------------PELV 242 (313)
Q Consensus 185 --~--~~~l~~l~~-~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~-----------------~al~ 242 (313)
. ..+.++++. +.|+|+.|+- +...+..+++...+ . .=.++...|-|+-.|. ..+.
T Consensus 87 ~~~i~~~~~~~l~~~~~D~VvdaiD-~~~~k~~L~~~c~~-~-~ip~I~s~g~g~~~dp~~i~i~di~~t~~~pla~~~R 163 (231)
T cd00755 87 EEFLTPDNSEDLLGGDPDFVVDAID-SIRAKVALIAYCRK-R-KIPVISSMGAGGKLDPTRIRVADISKTSGDPLARKVR 163 (231)
T ss_pred eeecCHhHHHHHhcCCCCEEEEcCC-CHHHHHHHHHHHHH-h-CCCEEEEeCCcCCCCCCeEEEccEeccccCcHHHHHH
Confidence 0 024556664 6899888774 33444444432222 1 1245555666655442 3456
Q ss_pred HHHHhCCceEEEcc-CCCCCCC
Q 021361 243 SALLEGRLAGAGLD-VYENEPE 263 (313)
Q Consensus 243 ~al~~g~~~ga~lD-V~~~EP~ 263 (313)
+.|++.++.. .+. ||..|++
T Consensus 164 ~~Lrk~~~~~-~~~~v~S~E~~ 184 (231)
T cd00755 164 KRLRKRGIFF-GVPVVYSTEPP 184 (231)
T ss_pred HHHHHcCCCC-CeEEEeCCCCC
Confidence 6677776651 234 5777764
No 473
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.24 E-value=0.38 Score=45.27 Aligned_cols=94 Identities=10% Similarity=0.115 Sum_probs=58.7
Q ss_pred CEEEEEcC-ChhHHHHHHHHHhcC-------CcEEEECCCCcc--ccc----c-----------cccCCHHHHHhhCCee
Q 021361 145 KSVGIVGL-GRIGTAIAKRVEAFG-------CPISYHSRSEKS--DAN----Y-----------KYYTNIIDLASNCQIL 199 (313)
Q Consensus 145 ~~vgiiG~-G~iG~~~a~~l~~~g-------~~V~~~~~~~~~--~~~----~-----------~~~~~l~~l~~~aDvv 199 (313)
.+|+|+|. |.+|..++..|...+ .+|..+|+.... ..+ . ....++.+.++.||+|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV 82 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence 37999999 999999999998744 478889885421 111 0 0124567889999999
Q ss_pred EEecCCChH---hh-hcc--CH-------HHHhhc-CCCcEEEEcCCCCccCHHH
Q 021361 200 IVACSLTEE---TH-HIV--NR-------KVIDAL-GPSGILINIGRGAHIDEPE 240 (313)
Q Consensus 200 ~l~~p~~~~---t~-~~i--~~-------~~l~~m-k~ga~~in~~rg~~vd~~a 240 (313)
+.+.-.... ++ .++ |. ..+... ++++++|.++ .++|.-.
T Consensus 83 I~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t 135 (325)
T cd01336 83 ILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG--NPANTNA 135 (325)
T ss_pred EEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec--CcHHHHH
Confidence 987654221 11 111 11 123334 5788888876 3444433
No 474
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=92.22 E-value=0.63 Score=44.17 Aligned_cols=81 Identities=19% Similarity=0.300 Sum_probs=50.5
Q ss_pred CCEEEEEcC-ChhHHHHHHHHHh-cCCc---EEEE-CC-CCcccccc-----cc-cCCHHHHHhhCCeeEEecCCChHhh
Q 021361 144 GKSVGIVGL-GRIGTAIAKRVEA-FGCP---ISYH-SR-SEKSDANY-----KY-YTNIIDLASNCQILIVACSLTEETH 210 (313)
Q Consensus 144 g~~vgiiG~-G~iG~~~a~~l~~-~g~~---V~~~-~~-~~~~~~~~-----~~-~~~l~~l~~~aDvv~l~~p~~~~t~ 210 (313)
+.+|||||. |.+|+.+.+.|.. -.++ +..+ +. +..+.... .. ..+.++ ++++|++++++|.. .
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~~~~Divf~a~~~~-~-- 80 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-FEGVDIAFFSAGGE-V-- 80 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-hcCCCEEEECCChH-H--
Confidence 468999998 9999999999984 6666 4333 32 22221111 11 123444 47899999999853 2
Q ss_pred hccCHHHHhh-cCCCcEEEEcC
Q 021361 211 HIVNRKVIDA-LGPSGILINIG 231 (313)
Q Consensus 211 ~~i~~~~l~~-mk~ga~~in~~ 231 (313)
.+++... .+.|..+|+.|
T Consensus 81 ---s~~~~~~~~~~G~~VID~S 99 (347)
T PRK06728 81 ---SRQFVNQAVSSGAIVIDNT 99 (347)
T ss_pred ---HHHHHHHHHHCCCEEEECc
Confidence 2222222 35688899887
No 475
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=92.21 E-value=0.43 Score=45.31 Aligned_cols=85 Identities=22% Similarity=0.365 Sum_probs=57.9
Q ss_pred CCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcccc------ccccc----C-C----HHHHH--hhCCeeEEecCC
Q 021361 144 GKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDA------NYKYY----T-N----IIDLA--SNCQILIVACSL 205 (313)
Q Consensus 144 g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~------~~~~~----~-~----l~~l~--~~aDvv~l~~p~ 205 (313)
+.++.|+|.|.||...++.++.+|. +|++.|+++++.. +.... . . ..++- ..+|+++-|+..
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~ 248 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGS 248 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCC
Confidence 3399999999999999999999997 5778888775421 11111 1 1 11222 248999998872
Q ss_pred ChHhhhccCHHHHhhcCCCcEEEEcCCC
Q 021361 206 TEETHHIVNRKVIDALGPSGILINIGRG 233 (313)
Q Consensus 206 ~~~t~~~i~~~~l~~mk~ga~~in~~rg 233 (313)
+. .+ ...++.++++..++.+|=.
T Consensus 249 -~~---~~-~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 249 -PP---AL-DQALEALRPGGTVVVVGVY 271 (350)
T ss_pred -HH---HH-HHHHHHhcCCCEEEEEecc
Confidence 22 11 3466778999988888854
No 476
>PRK06128 oxidoreductase; Provisional
Probab=92.21 E-value=0.25 Score=45.46 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=31.5
Q ss_pred ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCC
Q 021361 141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRS 176 (313)
Q Consensus 141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~ 176 (313)
.++||++.|.|. |.||+.+|+.|...|++|.+..+.
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~ 88 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLP 88 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 588999999996 889999999999999998776554
No 477
>PRK06172 short chain dehydrogenase; Provisional
Probab=92.17 E-value=0.27 Score=43.62 Aligned_cols=38 Identities=29% Similarity=0.336 Sum_probs=33.9
Q ss_pred ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361 141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK 178 (313)
Q Consensus 141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~ 178 (313)
.+.||++.|.|. |.||+.+++.|...|++|+..+|+.+
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~ 42 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAA 42 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 477999999996 78999999999999999999998754
No 478
>PRK07890 short chain dehydrogenase; Provisional
Probab=92.16 E-value=0.44 Score=42.31 Aligned_cols=37 Identities=24% Similarity=0.454 Sum_probs=33.1
Q ss_pred cCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361 142 FSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK 178 (313)
Q Consensus 142 l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~ 178 (313)
+.+|++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~ 40 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAE 40 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 57899999996 79999999999999999999988654
No 479
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=92.13 E-value=0.29 Score=45.09 Aligned_cols=60 Identities=15% Similarity=0.258 Sum_probs=44.3
Q ss_pred CEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcccc-----ccc-------ccCCHHHHHhhCCeeEEecC
Q 021361 145 KSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDA-----NYK-------YYTNIIDLASNCQILIVACS 204 (313)
Q Consensus 145 ~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-----~~~-------~~~~l~~l~~~aDvv~l~~p 204 (313)
++|.|.|. |.+|+.+++.|...|++|.+.+|+..... +.. ...++.++++.+|+|+.+..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 36889985 99999999999999999999988754321 111 11346677888998887664
No 480
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=92.09 E-value=0.24 Score=42.64 Aligned_cols=60 Identities=18% Similarity=0.270 Sum_probs=43.8
Q ss_pred EEEEEcCChhHHHHHHHH--HhcCCcE-EEECCCCccc----cc--ccccCCHHHHHh--hCCeeEEecCC
Q 021361 146 SVGIVGLGRIGTAIAKRV--EAFGCPI-SYHSRSEKSD----AN--YKYYTNIIDLAS--NCQILIVACSL 205 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l--~~~g~~V-~~~~~~~~~~----~~--~~~~~~l~~l~~--~aDvv~l~~p~ 205 (313)
++.|||.|++|++++..- +..||++ .++|..++.. .+ ....++++..++ +.|+.++|+|.
T Consensus 86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa 156 (211)
T COG2344 86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPA 156 (211)
T ss_pred eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccH
Confidence 699999999999999753 4788986 5788776521 11 122356777777 68889999985
No 481
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=92.07 E-value=0.38 Score=45.27 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=32.8
Q ss_pred cCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361 142 FSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK 178 (313)
Q Consensus 142 l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~ 178 (313)
++|++|.|.|. |.||+.+++.|...|++|++.+|...
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 39 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPP 39 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCc
Confidence 46899999996 89999999999999999999887654
No 482
>PRK06398 aldose dehydrogenase; Validated
Probab=92.07 E-value=0.6 Score=41.85 Aligned_cols=38 Identities=21% Similarity=0.264 Sum_probs=33.8
Q ss_pred ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361 141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK 178 (313)
Q Consensus 141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~ 178 (313)
+++||++.|.|. |.||+.+|+.|...|++|+..+|+..
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~ 41 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEP 41 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcc
Confidence 478999999996 58999999999999999999888754
No 483
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.05 E-value=0.86 Score=44.55 Aligned_cols=106 Identities=14% Similarity=0.196 Sum_probs=65.1
Q ss_pred cCC-CEEEEEcCChhHHHHHHHHHhc--CCcEEEECCCCccc------cccccc-C-CHHHHHhhCCeeEEecCCChH--
Q 021361 142 FSG-KSVGIVGLGRIGTAIAKRVEAF--GCPISYHSRSEKSD------ANYKYY-T-NIIDLASNCQILIVACSLTEE-- 208 (313)
Q Consensus 142 l~g-~~vgiiG~G~iG~~~a~~l~~~--g~~V~~~~~~~~~~------~~~~~~-~-~l~~l~~~aDvv~l~~p~~~~-- 208 (313)
++| ++|.|||+|..|.+.++.|... |++|.++|...... .+.... . .-.+.+.++|+|+..-...+.
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~p 83 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPEDVELHSGGWNLEWLLEADLVVTNPGIALATP 83 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhcCCEEEeCCCChHHhccCCEEEECCCCCCCCH
Confidence 456 7899999999999999999877 58899999654221 122221 1 122345789988775433222
Q ss_pred -hh-------hccCH-HHHh-hcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361 209 -TH-------HIVNR-KVID-ALGPSGILINIGRGAHIDEPELVSALLE 247 (313)
Q Consensus 209 -t~-------~~i~~-~~l~-~mk~ga~~in~~rg~~vd~~al~~al~~ 247 (313)
.+ .++.+ +.+. .++...+-|--+-|+.--.+-+...|+.
T Consensus 84 ~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 132 (438)
T PRK04663 84 EIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKA 132 (438)
T ss_pred HHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 11 13322 3332 3343345555557888877777787775
No 484
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=91.99 E-value=0.36 Score=41.58 Aligned_cols=62 Identities=19% Similarity=0.201 Sum_probs=48.1
Q ss_pred CEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccccc---c-------cccCCHHHHHhhCCeeEEecCCC
Q 021361 145 KSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDAN---Y-------KYYTNIIDLASNCQILIVACSLT 206 (313)
Q Consensus 145 ~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~---~-------~~~~~l~~l~~~aDvv~l~~p~~ 206 (313)
.+|+|||. |.+|+.+++-++..|++|+++-|++.+... . ...+++.+.+...|+|+.+....
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence 47999996 899999999999999999999888765422 1 11245567888999999987543
No 485
>PLN02740 Alcohol dehydrogenase-like
Probab=91.98 E-value=0.65 Score=44.35 Aligned_cols=36 Identities=36% Similarity=0.493 Sum_probs=32.3
Q ss_pred CCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCc
Q 021361 143 SGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEK 178 (313)
Q Consensus 143 ~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~ 178 (313)
.|.+|.|+|.|.+|..+++.++.+|. +|++.+++.+
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~ 234 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPE 234 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChH
Confidence 58899999999999999999999999 5888887654
No 486
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=91.95 E-value=0.57 Score=44.32 Aligned_cols=85 Identities=25% Similarity=0.310 Sum_probs=55.7
Q ss_pred CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc------ccccc---cCC---HHHHHhhCCeeEEecCCChHhh
Q 021361 143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD------ANYKY---YTN---IIDLASNCQILIVACSLTEETH 210 (313)
Q Consensus 143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------~~~~~---~~~---l~~l~~~aDvv~l~~p~~~~t~ 210 (313)
.|.++.|+|.|.+|..+++.++..|.+|++.+++.++. .++.. ..+ +.++....|+++-+++....
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~~-- 257 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFHP-- 257 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchHH--
Confidence 57899999999999999999999999988777654321 12211 111 22222346887777653211
Q ss_pred hccCHHHHhhcCCCcEEEEcCC
Q 021361 211 HIVNRKVIDALGPSGILINIGR 232 (313)
Q Consensus 211 ~~i~~~~l~~mk~ga~~in~~r 232 (313)
-...++.++++..++.+|.
T Consensus 258 ---~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 258 ---LEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred ---HHHHHHHhccCCEEEEECC
Confidence 1235677888888888874
No 487
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=91.90 E-value=0.36 Score=45.10 Aligned_cols=63 Identities=22% Similarity=0.261 Sum_probs=44.5
Q ss_pred cCCCEEEEEcC-ChhHHHHHHHHHhcC--CcEEEECCCCccc---------ccccc-------cCCHHHHHhhCCeeEEe
Q 021361 142 FSGKSVGIVGL-GRIGTAIAKRVEAFG--CPISYHSRSEKSD---------ANYKY-------YTNIIDLASNCQILIVA 202 (313)
Q Consensus 142 l~g~~vgiiG~-G~iG~~~a~~l~~~g--~~V~~~~~~~~~~---------~~~~~-------~~~l~~l~~~aDvv~l~ 202 (313)
+.|++|.|.|. |.||+.+++.|...| .+|.+++|..... ..... ..++.+++++.|+|+.+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~ 81 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHA 81 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEEC
Confidence 56899999996 899999999998876 6898888764321 01111 12456677889988765
Q ss_pred cC
Q 021361 203 CS 204 (313)
Q Consensus 203 ~p 204 (313)
..
T Consensus 82 Ag 83 (324)
T TIGR03589 82 AA 83 (324)
T ss_pred cc
Confidence 43
No 488
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.86 E-value=0.29 Score=43.96 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=32.8
Q ss_pred ccCCCEEEEEcC---ChhHHHHHHHHHhcCCcEEEECCCC
Q 021361 141 KFSGKSVGIVGL---GRIGTAIAKRVEAFGCPISYHSRSE 177 (313)
Q Consensus 141 ~l~g~~vgiiG~---G~iG~~~a~~l~~~g~~V~~~~~~~ 177 (313)
.++||++.|.|. +.||.++|+.|...|++|+..+|+.
T Consensus 4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~ 43 (256)
T PRK07889 4 LLEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGR 43 (256)
T ss_pred cccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCcc
Confidence 378999999996 7999999999999999998887653
No 489
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=91.84 E-value=0.66 Score=45.73 Aligned_cols=67 Identities=18% Similarity=0.277 Sum_probs=53.9
Q ss_pred ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc--------------------------cccc--------
Q 021361 139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD--------------------------ANYK-------- 184 (313)
Q Consensus 139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~--------------------------~~~~-------- 184 (313)
.....|++|+|||.|.-|-..|..|...|+.|++|.+....- .+.+
T Consensus 118 ~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG 197 (457)
T COG0493 118 PGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVG 197 (457)
T ss_pred CCCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceEC
Confidence 345678999999999999999999999999999999876430 1111
Q ss_pred ccCCHHHHHhhCCeeEEecCC
Q 021361 185 YYTNIIDLASNCQILIVACSL 205 (313)
Q Consensus 185 ~~~~l~~l~~~aDvv~l~~p~ 205 (313)
...+++++.++.|.|++++..
T Consensus 198 ~~it~~~L~~e~Dav~l~~G~ 218 (457)
T COG0493 198 RDITLEELLKEYDAVFLATGA 218 (457)
T ss_pred CcCCHHHHHHhhCEEEEeccc
Confidence 125799999999999998764
No 490
>PRK08628 short chain dehydrogenase; Provisional
Probab=91.81 E-value=0.32 Score=43.29 Aligned_cols=38 Identities=29% Similarity=0.335 Sum_probs=33.4
Q ss_pred ccCCCEEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361 141 KFSGKSVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEK 178 (313)
Q Consensus 141 ~l~g~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~ 178 (313)
.+.|+++.|.| .|.||+.+|+.|...|++|.+.+|+..
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~ 42 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAP 42 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChh
Confidence 47899999999 478999999999999999988887654
No 491
>PRK07856 short chain dehydrogenase; Provisional
Probab=91.79 E-value=0.37 Score=42.89 Aligned_cols=38 Identities=26% Similarity=0.382 Sum_probs=33.3
Q ss_pred ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361 141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK 178 (313)
Q Consensus 141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~ 178 (313)
.+.||++.|.|. |.||+.+++.|...|++|+..+|+..
T Consensus 3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~ 41 (252)
T PRK07856 3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAP 41 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChh
Confidence 367999999996 68999999999999999998888653
No 492
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.72 E-value=0.6 Score=42.20 Aligned_cols=35 Identities=23% Similarity=0.458 Sum_probs=31.7
Q ss_pred cCCCEEEEEcCC---hhHHHHHHHHHhcCCcEEEECCC
Q 021361 142 FSGKSVGIVGLG---RIGTAIAKRVEAFGCPISYHSRS 176 (313)
Q Consensus 142 l~g~~vgiiG~G---~iG~~~a~~l~~~g~~V~~~~~~ 176 (313)
++||++-|.|.| .||+++|+.|...|++|+..+|+
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~ 41 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN 41 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc
Confidence 789999999997 69999999999999999887775
No 493
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=91.68 E-value=0.34 Score=46.20 Aligned_cols=34 Identities=21% Similarity=0.391 Sum_probs=31.0
Q ss_pred EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc
Q 021361 146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS 179 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~ 179 (313)
+|+|||.|..|..+++.++.+|++|+++|+.+..
T Consensus 1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~~~~ 34 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYANA 34 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 5899999999999999999999999999987643
No 494
>PRK06182 short chain dehydrogenase; Validated
Probab=91.64 E-value=0.85 Score=41.09 Aligned_cols=36 Identities=28% Similarity=0.331 Sum_probs=32.0
Q ss_pred CCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361 143 SGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK 178 (313)
Q Consensus 143 ~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~ 178 (313)
+++++.|.|. |.||+.+++.|...|++|++.+|+.+
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~ 38 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVD 38 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 5789999995 89999999999999999999888754
No 495
>PRK12939 short chain dehydrogenase; Provisional
Probab=91.62 E-value=0.3 Score=43.05 Aligned_cols=38 Identities=18% Similarity=0.407 Sum_probs=33.3
Q ss_pred ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361 141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK 178 (313)
Q Consensus 141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~ 178 (313)
.+.|+++.|.|. |.||+.+|+.|...|++|.+.+|+.+
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~ 42 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAA 42 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 367899999996 89999999999999999988887654
No 496
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=91.56 E-value=0.63 Score=43.45 Aligned_cols=76 Identities=17% Similarity=0.192 Sum_probs=49.4
Q ss_pred EEEEEcC-ChhHHHHHHHHHhc-CCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCC
Q 021361 146 SVGIVGL-GRIGTAIAKRVEAF-GCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGP 223 (313)
Q Consensus 146 ~vgiiG~-G~iG~~~a~~l~~~-g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ 223 (313)
+|+|+|. |-.|..+.++|... .+++......... . ..+.+++++++|++++++|... ...+. ... .+.
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~----~-~~~~~~~~~~~D~vFlalp~~~-s~~~~-~~~---~~~ 72 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRK----D-AAERAKLLNAADVAILCLPDDA-AREAV-SLV---DNP 72 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEeccccc----C-cCCHhHhhcCCCEEEECCCHHH-HHHHH-HHH---HhC
Confidence 7999986 77899999999865 3465544322211 1 1246677789999999998542 22222 111 245
Q ss_pred CcEEEEcC
Q 021361 224 SGILINIG 231 (313)
Q Consensus 224 ga~~in~~ 231 (313)
|..+||.|
T Consensus 73 g~~VIDlS 80 (310)
T TIGR01851 73 NTCIIDAS 80 (310)
T ss_pred CCEEEECC
Confidence 78888887
No 497
>PRK08862 short chain dehydrogenase; Provisional
Probab=91.47 E-value=0.28 Score=43.39 Aligned_cols=38 Identities=13% Similarity=0.300 Sum_probs=33.7
Q ss_pred ccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCc
Q 021361 141 KFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEK 178 (313)
Q Consensus 141 ~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~ 178 (313)
+++||++.|.|.+. ||+++|+.|...|++|...+|+.+
T Consensus 2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~ 40 (227)
T PRK08862 2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQS 40 (227)
T ss_pred CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 36799999999876 999999999999999999888654
No 498
>PRK05866 short chain dehydrogenase; Provisional
Probab=91.32 E-value=0.32 Score=44.76 Aligned_cols=40 Identities=25% Similarity=0.381 Sum_probs=35.7
Q ss_pred ccccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361 139 GSKFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK 178 (313)
Q Consensus 139 ~~~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~ 178 (313)
+..+.|+++.|.|. |.||+.+|+.|...|++|+..+|+.+
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~ 75 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARRED 75 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 45788999999997 99999999999999999999988753
No 499
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=91.31 E-value=0.73 Score=45.06 Aligned_cols=32 Identities=28% Similarity=0.439 Sum_probs=28.0
Q ss_pred EEEEEcCChhHHHHHHHHHhcCC------cEEEECCCC
Q 021361 146 SVGIVGLGRIGTAIAKRVEAFGC------PISYHSRSE 177 (313)
Q Consensus 146 ~vgiiG~G~iG~~~a~~l~~~g~------~V~~~~~~~ 177 (313)
+|.|||.|.+|..+++.|...|. ++.++|...
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~ 38 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDN 38 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCC
Confidence 48999999999999999999988 688888643
No 500
>PRK10537 voltage-gated potassium channel; Provisional
Probab=91.31 E-value=0.94 Score=43.81 Aligned_cols=83 Identities=7% Similarity=0.043 Sum_probs=51.4
Q ss_pred CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc---ccccc----cCCHHHH----HhhCCeeEEecCCChHhhhc
Q 021361 144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD---ANYKY----YTNIIDL----ASNCQILIVACSLTEETHHI 212 (313)
Q Consensus 144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~---~~~~~----~~~l~~l----~~~aDvv~l~~p~~~~t~~~ 212 (313)
..++-|+|+|.+|+.+++.|+..|.++.+.++..... .+... ..+.+.+ +++|+.|+++++.+.++...
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~i 319 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGLEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNAFV 319 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECchhhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHHH
Confidence 5689999999999999999999999988777542211 11111 1222222 45788888877765544432
Q ss_pred cCHHHHhhcCCCcEEE
Q 021361 213 VNRKVIDALGPSGILI 228 (313)
Q Consensus 213 i~~~~l~~mk~ga~~i 228 (313)
+ ...+.+.|+..+|
T Consensus 320 v--L~ar~l~p~~kII 333 (393)
T PRK10537 320 V--LAAKEMSSDVKTV 333 (393)
T ss_pred H--HHHHHhCCCCcEE
Confidence 2 2344555554433
Done!