RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 021361
(313 letters)
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
substrate binding domain, cofactor bindi domain,
oxidoreductase; 1.47A {Solenostemon scutellarioides}
PDB: 3baz_A*
Length = 333
Score = 459 bits (1184), Expect = e-164
Identities = 218/313 (69%), Positives = 258/313 (82%)
Query: 1 MEKIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAE 60
ME IGVLM PMS YLEQEL RF LF+ WTQ + F + +IRAVVG++ GADAE
Sbjct: 21 MEAIGVLMMCPMSTYLEQELDKRFKLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAE 80
Query: 61 LIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVC 120
LID+LP LEIV+S+SVGLDK+DL KC++K VRVTNTPDVLTDDVADLA+GL+LAVLRR+C
Sbjct: 81 LIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRIC 140
Query: 121 EFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD 180
E D++V+ G WK G F+L +KFSGK VGI+GLGRIG A+A+R EAF CPISY SRS+K +
Sbjct: 141 ECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPN 200
Query: 181 ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPE 240
NY YY ++++LASN IL+VAC LT ET HI+NR+VIDALGP G+LINIGRG H+DEPE
Sbjct: 201 TNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPE 260
Query: 241 LVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLV 300
LVSAL+EGRL GAGLDV+E EPEVPE++ GL NVVLLPHVGS T ET K MADLV+ NL
Sbjct: 261 LVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLE 320
Query: 301 AHFSNKPLLTPVI 313
AHFS KPLLTPV+
Sbjct: 321 AHFSGKPLLTPVV 333
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
oxidoreductase; 2.50A {Sinorhizobium meliloti}
Length = 340
Score = 438 bits (1129), Expect = e-156
Identities = 123/311 (39%), Positives = 183/311 (58%), Gaps = 2/311 (0%)
Query: 3 KIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELI 62
K +L+ PM ++ EL +++ +L+ + + + +IRAV G E +
Sbjct: 30 KPDLLLVEPMMPFVMDELQRNYSVHRLYQAADRPAL-EAALPSIRAVATGGGAGLSNEWM 88
Query: 63 DSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEF 122
+ LP+L I+A VG DK+DL + + + + VT TP VL DDVADL + L+LAVLRRV +
Sbjct: 89 EKLPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDG 148
Query: 123 DEFVKSGKWKNGH-FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA 181
D V+ G+W G LG GK +G++GLG+IG A+A R EAFG + Y +RS S
Sbjct: 149 DRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSGV 208
Query: 182 NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPEL 241
++ + + +DLA + +L V + + T +IV+ ++ ALGP GI++N+ RG +DE L
Sbjct: 209 DWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDAL 268
Query: 242 VSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVA 301
+ AL G +AGAGLDV+ NEP + + N VL+PH GS T ET AM LV+ NL A
Sbjct: 269 IEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLMPHQGSATVETRMAMGKLVLANLAA 328
Query: 302 HFSNKPLLTPV 312
HF+ + V
Sbjct: 329 HFAGEKAPNTV 339
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 367 bits (945), Expect = e-128
Identities = 101/319 (31%), Positives = 149/319 (46%), Gaps = 7/319 (2%)
Query: 1 MEKIGVLMTTPMSNYLEQELAARFTL-FKLWTQSCKNKFFQENSSAIRAVVGDTKCGADA 59
+ + +E EL RF L L + + A
Sbjct: 26 HPIQKAFLCRRFTPAIEAELRQRFDLEVNLEDTVLTPSGIASRAHGAEVLFVTATEAITA 85
Query: 60 ELIDSL-PTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRR 118
E+I L P L+ +A+ SVG D ID+ + ++V +TPDVL+D A++A+ LVL RR
Sbjct: 86 EVIRKLQPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRR 145
Query: 119 VCEFDEFVKSGKWKNGH--FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS 176
E D V+SG W LG +G+ +GI G+GRIG AIA R FG I YH+R+
Sbjct: 146 GYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRT 205
Query: 177 EKSDA---NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRG 233
S A Y+ + L I ++A E ++ I + ++INI RG
Sbjct: 206 RLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRG 265
Query: 234 AHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMAD 293
I++ L+ AL L AGLDV+ NEP + + L+N+ L PH+GS T ET AM
Sbjct: 266 DLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRDAMGW 325
Query: 294 LVIENLVAHFSNKPLLTPV 312
L+I+ + A + +
Sbjct: 326 LLIQGIEALNQSDVPDNLI 344
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B
Length = 348
Score = 337 bits (867), Expect = e-116
Identities = 83/338 (24%), Positives = 151/338 (44%), Gaps = 26/338 (7%)
Query: 1 MEKIGVLMTTPMSNY---LEQELAARFTLFKLWT-------QSCKNKFFQENSSAIRAVV 50
M + VL+ + + L + +F + Q+ + K + + + I+ V
Sbjct: 1 MPRPRVLLLGDPARHLDDLWSDFQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAV 60
Query: 51 GDTKCGA--DAELIDSLP-TLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADL 107
+ +A+LI LP +L++ A+ G D +DLD ++ V N+ +DL
Sbjct: 61 ENGTESYPWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDL 120
Query: 108 AVGLVLAVLRRVCEFDEFVKSGKWKNGHF------ELGSKFSGKSVGIVGLGRIGTAIAK 161
A+ L+L+V R + ++G + + + G +G VGLG I IA+
Sbjct: 121 ALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIAR 180
Query: 162 R-VEAFGCPISYHSRSEKSDA-----NYKYYTNIIDLASNCQILIVACSLTEETHHIVNR 215
+ V G + Y+ + + ++ +LA + V+ + THH+++
Sbjct: 181 KAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDE 240
Query: 216 KVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVV 275
A+ P ++N RG I + L++AL G+L AGLDV+E EP+V ++++ + +V
Sbjct: 241 AFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVT 300
Query: 276 LLPHVGSDTEETSKAMADLVIENLVAHFSN-KPLLTPV 312
L H+G ET L + N+ KPLLTP
Sbjct: 301 LTTHIGGVAIETFHEFERLTMTNIDRFLLQGKPLLTPA 338
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST
genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
horikoshii} PDB: 2dbr_A* 2dbz_A*
Length = 334
Score = 324 bits (833), Expect = e-111
Identities = 114/264 (43%), Positives = 162/264 (61%), Gaps = 9/264 (3%)
Query: 58 DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
D E+ ++ P L IVA+Y+VG D ID+++ + + VTNTPDVLTD ADLA L+LA R
Sbjct: 58 DKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATAR 117
Query: 118 RVCEFDEFVKSGKWKNGH------FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPIS 171
V + D FV+SG+WK + LG GK++GI+GLGRIG AIAKR + F I
Sbjct: 118 HVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRIL 177
Query: 172 YHSRSEKSDANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILI 228
Y+SR+ K + + + + DL +++A LT ET+H++N + + + + ILI
Sbjct: 178 YYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILI 237
Query: 229 NIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETS 288
NI RG +D LV AL EG +AGAGLDV+E EP E++ L+NVVL PH+GS +
Sbjct: 238 NIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAR 297
Query: 289 KAMADLVIENLVAHFSNKPLLTPV 312
+ MA+LV +NL+A + T V
Sbjct: 298 EGMAELVAKNLIAFKRGEIPPTLV 321
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
c.23.12.1
Length = 320
Score = 321 bits (825), Expect = e-110
Identities = 82/263 (31%), Positives = 131/263 (49%), Gaps = 8/263 (3%)
Query: 58 DAELIDSLP-TLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVL 116
E+ID +P ++ +++YS+G D IDLD CK + ++V N P +T A++A+ L+L
Sbjct: 57 RKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSA 116
Query: 117 RRVCEFDEFVKSGKWKNGH--FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHS 174
RR E ++ +++ W +G K K++GI G G IG A+AKR + F I Y
Sbjct: 117 RRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFD 176
Query: 175 RSEKSDA-----NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILIN 229
S + ++ ++ L S Q + T ET + N+ I +L I++N
Sbjct: 177 THRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVN 236
Query: 230 IGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSK 289
RG +D +V+AL GRLA AG DV+ EP + E L N L PH+GS + +
Sbjct: 237 TARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQARE 296
Query: 290 AMADLVIENLVAHFSNKPLLTPV 312
MA + + A F + +
Sbjct: 297 DMAHQANDLIDALFGGADMSYAL 319
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics,
riken structur genomics/proteomics initiative, RSGI,
NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Length = 311
Score = 316 bits (813), Expect = e-108
Identities = 105/259 (40%), Positives = 156/259 (60%), Gaps = 6/259 (2%)
Query: 58 DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
DAE++D L+++A YSVG+D +DL+ +++ +RVT+TP VLT+ ADL + L+LAV R
Sbjct: 56 DAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVAR 115
Query: 118 RVCEFDEFVKSGKWKNGHFE--LGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSR 175
RV E + + G WK H E LG G ++G+VG+GRIG A+AKR AFG + YH+R
Sbjct: 116 RVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHAR 175
Query: 176 SEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAH 235
+ K + ++ +L ++ + LT ETH ++NR+ + A+ IL+N RGA
Sbjct: 176 TPKPLP--YPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGAL 233
Query: 236 IDEPELVSALLEGRLAGAGLDVYENEPEVPEQ-MLGLNNVVLLPHVGSDTEETSKAMADL 294
+D LV A L G L GAGLDV + EP P + L N V+ PH+GS T + MA++
Sbjct: 234 VDTEALVEA-LRGHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEV 292
Query: 295 VIENLVAHFSNKPLLTPVI 313
+ENL+A + PV+
Sbjct: 293 AVENLLAVLEGREPPNPVV 311
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 314 bits (807), Expect = e-107
Identities = 95/263 (36%), Positives = 150/263 (57%), Gaps = 8/263 (3%)
Query: 58 DAELIDSL-PTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVL 116
D ++D+ L+++++ SVG+D + LD+ K + +RV TPDVLTD A+LAV L+L
Sbjct: 66 DKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTC 125
Query: 117 RRVCEFDEFVKSGKWKNGH--FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYH 173
RR+ E E VK+G W + + G + +VGI+GLGRIG AIA+R++ FG Y
Sbjct: 126 RRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYT 185
Query: 174 SRSEKSDANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINI 230
R + + ++ + + +LA+ ++VACSLT T + N+ + + + INI
Sbjct: 186 GRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINI 245
Query: 231 GRGAHIDEPELVSALLEGRLAGAGLDVYENEP-EVPEQMLGLNNVVLLPHVGSDTEETSK 289
RG +++ +L AL G++A AGLDV EP +L L N V+LPH+GS T T
Sbjct: 246 SRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRN 305
Query: 290 AMADLVIENLVAHFSNKPLLTPV 312
M+ L NL+A +P+ + +
Sbjct: 306 TMSLLAANNLLAGLRGEPMPSEL 328
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum
aerophilum} SCOP: c.2.1.4 c.23.12.1
Length = 303
Score = 305 bits (784), Expect = e-104
Identities = 56/259 (21%), Positives = 106/259 (40%), Gaps = 8/259 (3%)
Query: 58 DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
AE + +P L+ + + GLD + + V V D VA+ A+ L+LA +
Sbjct: 41 TAEELAKMPRLKFIQVVTAGLDHLPWESIP-PHVTVAGNAGSNADAVAEFALALLLAPYK 99
Query: 118 RVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE 177
R+ ++ E +K G + G+ V ++GLG IGT + K + A G + SR+
Sbjct: 100 RIIQYGEKMKRGDYGRDVE--IPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP 157
Query: 178 KSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHID 237
K +++ ++ + + + A L + T +V + + + + +N+GR +D
Sbjct: 158 KEGP-WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLD 216
Query: 238 EPELVSALLEGRLAGAGLDVYENEPEVPEQ--MLGLNNVVLLPHVGSDT--EETSKAMAD 293
++ L E DV+ + + L NVV P V E + M
Sbjct: 217 RDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQMVM 276
Query: 294 LVIENLVAHFSNKPLLTPV 312
+ NL+ + +
Sbjct: 277 EAVRNLITYATGGRPRNIA 295
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid
dehydrogenase, oxidoreductase; HET: NAD; 1.70A
{Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A*
4e5m_A*
Length = 330
Score = 296 bits (760), Expect = e-100
Identities = 71/268 (26%), Positives = 131/268 (48%), Gaps = 13/268 (4%)
Query: 58 DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
DA+ + + P L ++ G D D+D C + V +T PD+LT A+LA+GL + + R
Sbjct: 58 DADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 117
Query: 118 RVCEFDEFVKSGKWKNGHFE-LGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS 176
+ D FV+SGK++ G+ +VG +G+G IG A+A R++ +G + YH
Sbjct: 118 HLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAK 177
Query: 177 EKSDANYK----YYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGR 232
+ +L ++ +++A L +T H+VN +++ + P +L+N R
Sbjct: 178 ALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCR 237
Query: 233 GAHIDEPELVSALLEGRLAGAGLDVYENE--------PEVPEQMLGLNNVVLLPHVGSDT 284
G+ +DE +++AL G+L G DV+E E ++ +L N + PH+GS
Sbjct: 238 GSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAV 297
Query: 285 EETSKAMADLVIENLVAHFSNKPLLTPV 312
+ +N++ + + + V
Sbjct: 298 RAVRLEIERCAAQNILQALAGERPINAV 325
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 1.95A
{Pyrococcus horikoshii}
Length = 333
Score = 264 bits (677), Expect = 1e-87
Identities = 79/264 (29%), Positives = 138/264 (52%), Gaps = 10/264 (3%)
Query: 58 DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
E++++ L++++ +S G D IDL++ + + VT +L++ VA+ VGL++ ++R
Sbjct: 55 TREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMR 114
Query: 118 RVCEFDEFVKSGKWKNGHFE-----LGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISY 172
++ D+F++ G+W++ GK VGI+G+G IG AIA+R+ FG + Y
Sbjct: 115 KIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYY 174
Query: 173 HSRSEKSDANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILIN 229
SR K + + Y +I +L I+I+A LT +T+HI+N + + L+N
Sbjct: 175 WSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERV-KKLEGKYLVN 233
Query: 230 IGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGL-NNVVLLPHVGSDTEETS 288
IGRGA +DE + A+ +G+L G DV+E EP ++ VL PH E
Sbjct: 234 IGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQ 293
Query: 289 KAMADLVIENLVAHFSNKPLLTPV 312
+ + +ENL+ + V
Sbjct: 294 EDVGFRAVENLLKVLRGEVPEDLV 317
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 257 bits (658), Expect = 9e-85
Identities = 65/318 (20%), Positives = 125/318 (39%), Gaps = 13/318 (4%)
Query: 1 MEKIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAE 60
M + LM Q+L + + + + I + G+
Sbjct: 1 MSLV--LMAQATKPEQLQQLQTTYPDWTFKDAA---AVTAADYDQIEVMYGNHP-LLKTI 54
Query: 61 LIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVC 120
L L+ V S G+D + L + V V NT + D +++ + +L+V+R
Sbjct: 55 LARPTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYH 114
Query: 121 EFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD 180
+ + S +G+ + I G G+IG ++A + A G + + +
Sbjct: 115 AAWLNQRGARQWALPMT-TSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPA 173
Query: 181 ANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHID 237
++ +T D + ++ A LT THH+ + ++ +LINIGRG +D
Sbjct: 174 DHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVD 233
Query: 238 EPELVSALLEGRLAGAGLDVYENEPEVPEQ--MLGLNNVVLLPHVGSDTEETSKAMADLV 295
L++AL +L+ A LDV E EP +P + ++V++ PH+ + +
Sbjct: 234 TTALMTALDHHQLSMAALDVTEPEP-LPTDHPLWQRDDVLITPHISGQIAHFRATVFPIF 292
Query: 296 IENLVAHFSNKPLLTPVI 313
N + L+ +
Sbjct: 293 AANFAQFVKDGTLVRNQV 310
>2nac_A NAD-dependent formate dehydrogenase;
oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A*
2gsd_A* 3fn4_A
Length = 393
Score = 255 bits (654), Expect = 3e-83
Identities = 61/263 (23%), Positives = 104/263 (39%), Gaps = 7/263 (2%)
Query: 58 DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
E I L++ + +G D +DL D+ V V + VA+ V ++L+++R
Sbjct: 104 TPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVR 163
Query: 118 RVCEFDEFVKSGKWKNGHF-ELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS 176
E+ + G W VG V GRIG A+ +R+ F + Y R
Sbjct: 164 NYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRH 223
Query: 177 EKSDA-----NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIG 231
++ N ++ D+ C ++ + C L ET H++N + + ++N
Sbjct: 224 RLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTA 283
Query: 232 RGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQ-MLGLNNVVLLPHVGSDTEETSKA 290
RG D + AL GRLAG DV+ +P + + + PH+ T
Sbjct: 284 RGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQAR 343
Query: 291 MADLVIENLVAHFSNKPLLTPVI 313
A E L F +P+ +
Sbjct: 344 YAAGTREILECFFEGRPIRDEYL 366
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
structural genomics, protein structure initiative; 2.20A
{Thermoplasma acidophilum}
Length = 290
Score = 235 bits (602), Expect = 9e-77
Identities = 62/251 (24%), Positives = 115/251 (45%), Gaps = 7/251 (2%)
Query: 58 DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
+ +++ + S G+D ID++ + V +N + VA+ A L+LA +
Sbjct: 40 IKDRYVLGKRTKMIQAISAGVDHIDVNGIPENVVLCSNAG-AYSISVAEHAFALLLAHAK 98
Query: 118 RVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE 177
+ E +E +K+G ++ + GK++GI+G G IG +A +AFG + ++RS
Sbjct: 99 NILENNELMKAGIFRQS---PTTLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSS 155
Query: 178 KSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHID 237
+ DL +++A LT++T +VN +++ + ++N+ R +
Sbjct: 156 VDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVS 215
Query: 238 EPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDT-EETSKAMADLVI 296
+P+++ L E DV+ NEPE+ E L N +L PHV E L
Sbjct: 216 KPDMIGFLKERSDVWYLSDVWWNEPEITE--TNLRNAILSPHVAGGMSGEIMDIAIQLAF 273
Query: 297 ENLVAHFSNKP 307
EN+ F +
Sbjct: 274 ENVRNFFEGEG 284
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
3ga0_A 2ome_A*
Length = 347
Score = 235 bits (603), Expect = 3e-76
Identities = 66/267 (24%), Positives = 117/267 (43%), Gaps = 12/267 (4%)
Query: 58 DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
E ++ L I+ G D ID+ D + V N P ++ AD + +L + R
Sbjct: 76 TREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYR 135
Query: 118 RVCEFDEFVKSGKWKNGHFE------LGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPIS 171
R + ++ G + ++ G+++GI+GLGR+G A+A R +AFG +
Sbjct: 136 RATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVL 195
Query: 172 YHSRSEKSDA----NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGIL 227
++ + + + DL + + + C L E HH++N + + L
Sbjct: 196 FYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFL 255
Query: 228 INIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQ--MLGLNNVVLLPHVGSDTE 285
+N RG +DE L AL EGR+ GA LDV+E+EP Q + N++ PH +E
Sbjct: 256 VNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSE 315
Query: 286 ETSKAMADLVIENLVAHFSNKPLLTPV 312
+ S M + + + + +
Sbjct: 316 QASIEMREEAAREIRRAITGRIPDSLK 342
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 233 bits (597), Expect = 2e-75
Identities = 68/284 (23%), Positives = 134/284 (47%), Gaps = 20/284 (7%)
Query: 48 AVVGDTKCGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADL 107
+ EL+ +P L+++ + SVG D IDLD CK K + VT+ P + VA+
Sbjct: 45 LISVFVYDKLTEELLSKMPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEH 104
Query: 108 AVGLVLAVLRRVCEFDEFVKSGKW-KNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAF 166
++L +++R+ ++ VK + ++ L + + ++G++G GRIG+ +A AF
Sbjct: 105 TFAMILTLVKRLKRIEDRVKKLNFSQDSEI-LARELNRLTLGVIGTGRIGSRVAMYGLAF 163
Query: 167 GCPISYHSRSEKSDAN--YKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPS 224
G + + ++ D YT++ +L ++ + T+ETHH++N + I +
Sbjct: 164 GMKVLCYDVVKREDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHMINEERISLMKDG 223
Query: 225 GILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQ----------------M 268
LIN RG +D L A G+ +G GLDV+E+E + + +
Sbjct: 224 VYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILEL 283
Query: 269 LGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPV 312
+NV++ PH+ T+++ + + + ++ + A
Sbjct: 284 ACKDNVIITPHIAYYTDKSLERIREETVKVVKAFVKGDLEQIKG 327
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD,
oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana}
PDB: 3n7u_A* 3naq_A
Length = 351
Score = 224 bits (574), Expect = 9e-72
Identities = 62/263 (23%), Positives = 115/263 (43%), Gaps = 7/263 (2%)
Query: 58 DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
AE I L+++ + +G D IDL + V VA+ + +L ++R
Sbjct: 77 TAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMR 136
Query: 118 RVCEFDEFVKSGKW-KNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS 176
V G+W G GK++G VG GRIG + +R++ FGC + YH R
Sbjct: 137 NFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRL 196
Query: 177 EKSDA-----NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIG 231
+ + K+ ++ ++ C ++++ LTE+T + N+++I L +++N
Sbjct: 197 QMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNA 256
Query: 232 RGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQ-MLGLNNVVLLPHVGSDTEETSKA 290
RGA ++ +V A+ G + G DV++ +P + + N + PH T +
Sbjct: 257 RGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLR 316
Query: 291 MADLVIENLVAHFSNKPLLTPVI 313
A + L +F + T
Sbjct: 317 YAAGTKDMLERYFKGEDFPTENY 339
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 217 bits (554), Expect = 2e-69
Identities = 84/251 (33%), Positives = 133/251 (52%), Gaps = 5/251 (1%)
Query: 58 DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
+I+S P L+++A VGLD ID++ K+K + V N P + VA+LAVGL+ +V R
Sbjct: 57 TRRVIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVAR 116
Query: 118 RVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE 177
++ D ++ G W +G + GK++GI+G GRIG +AK A G I +
Sbjct: 117 KIAFADRKMREGVWAKKEA-MGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYP 175
Query: 178 KSDANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGA 234
+ + + ++ L ++ + L E T+H++N + + + + ILIN RG
Sbjct: 176 NEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGP 235
Query: 235 HIDEPELVSALLEGRLAGAGLDVYENEPEVPE-QMLGLNNVVLLPHVGSDTEETSKAMAD 293
+D LV AL EG +AGAGLDV+E EP + + +NVVL PH+G+ T E +
Sbjct: 236 VVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGV 295
Query: 294 LVIENLVAHFS 304
V E +V
Sbjct: 296 EVAEKVVKILK 306
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 215 bits (550), Expect = 2e-68
Identities = 61/283 (21%), Positives = 118/283 (41%), Gaps = 19/283 (6%)
Query: 48 AVVGDTKCGADAELIDSLPT--LEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVA 105
VV + AE + +L + ++ +VG+D ID+ K K+ ++TN P + +A
Sbjct: 49 GVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAIA 108
Query: 106 DLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEA 165
+ A +LR+ DE V + +G + + VG+VG G IG + +E
Sbjct: 109 EHAAIQAARILRQDKAMDEKVARHDLRWAPT-IGREVRDQVVGVVGTGHIGQVFMQIMEG 167
Query: 166 FGCPISYHSR--SEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGP 223
FG + + + + + Y ++ DL ++ + H++N + I +
Sbjct: 168 FGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQ 227
Query: 224 SGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQ--------------ML 269
+++N+ RG +D ++ L G++ G +DVYE E + + ++
Sbjct: 228 DVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLI 287
Query: 270 GLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPV 312
NV++ P T + M +N + K TPV
Sbjct: 288 ARPNVLVTPKTAFYTTHAVRNMVVKAFDNNLELVEGKEAETPV 330
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid
dehydrogenase, cofactor regenerator, yeast, CBFDH; HET:
PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Length = 364
Score = 206 bits (525), Expect = 2e-64
Identities = 60/270 (22%), Positives = 103/270 (38%), Gaps = 15/270 (5%)
Query: 58 DAELIDSLPTLEIVASYSVGLDKIDLDKCKDK--AVRVTNTPDVLTDDVADLAVGLVLAV 115
E ID L++V VG D IDLD + V VA+ V +L +
Sbjct: 75 TKERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVL 134
Query: 116 LRRVCEFDEFVKSGKWKNGHF-ELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGC------ 168
+R E + + W+ + GK++ +G GRIG + +R+ F
Sbjct: 135 VRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYY 194
Query: 169 PISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILI 228
+ + + NI +L + I+ V L T ++N++++ L+
Sbjct: 195 DYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLV 254
Query: 229 NIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQ-MLGLNNV-----VLLPHVGS 282
N RGA ++ +AL G+L G G DV+ +P + + N + PH
Sbjct: 255 NTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSG 314
Query: 283 DTEETSKAMADLVIENLVAHFSNKPLLTPV 312
T + A + L + F+ K P
Sbjct: 315 TTLDAQTRYAQGTVNILESFFTGKFDYRPQ 344
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 204 bits (521), Expect = 4e-64
Identities = 63/283 (22%), Positives = 113/283 (39%), Gaps = 18/283 (6%)
Query: 48 AVVGDTKCGADAELIDSLPTLEI--VASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVA 105
AV+ C A+ + +D L + + + + G D ID + K+ + P + +A
Sbjct: 48 AVILRGNCFANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIA 107
Query: 106 DLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEA 165
+LAV + +LR +K F + +VG+VGLGRIG A+
Sbjct: 108 ELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHG 167
Query: 166 FGCPISYHSRSEKSD-ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPS 224
G + E +Y ++ ++ I+ + +E +V R + +
Sbjct: 168 MGATVIGEDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDG 227
Query: 225 GILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQ---------------ML 269
IL+N RG +D ++ A+ G+L G G DV + E V + +
Sbjct: 228 AILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVD 287
Query: 270 GLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPV 312
V++ PH+GS T+E K M ++ +NL +
Sbjct: 288 LYPRVLITPHLGSYTDEAVKNMVEVSYQNLKDLAETGDCPNKI 330
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A
{Ralstonia solanacearum}
Length = 352
Score = 202 bits (516), Expect = 5e-63
Identities = 66/268 (24%), Positives = 116/268 (43%), Gaps = 19/268 (7%)
Query: 58 DAELIDSLPTLEIVASYSV----GLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVL 113
+L+D LP L+I++ IDL+ C DK V V A+L LV+
Sbjct: 62 TRQLLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVM 120
Query: 114 AVLRRVCEFDEFVKSGKWKNGHFE---------LGSKFSGKSVGIVGLGRIGTAIAKRVE 164
A RR+ ++ +K G W+ + +G G+++GI G G+IG +A
Sbjct: 121 AAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGR 180
Query: 165 AFGCPI----SYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDA 220
AFG + +S+ + + L +L V L +ET I+ +
Sbjct: 181 AFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTR 240
Query: 221 LGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQ-MLGLNNVVLLPH 279
+ P+ + +N R ++E +V+AL GR A +DV+E EP + +L + N + PH
Sbjct: 241 MKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPH 300
Query: 280 VGSDTEETSKAMADLVIENLVAHFSNKP 307
+G E+ + + +N++
Sbjct: 301 IGYVERESYEMYFGIAFQNILDILQGNV 328
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 206 bits (527), Expect = 8e-63
Identities = 79/258 (30%), Positives = 129/258 (50%), Gaps = 4/258 (1%)
Query: 58 DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
DAE++ + P L+IVA VGLD +D+D + V V N P A+ A+ L+LA R
Sbjct: 57 DAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASR 116
Query: 118 RVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSR-- 175
++ D ++ WK F G++ GK+VG+VGLGRIG +A+R+ AFG + +
Sbjct: 117 QIPAADASLREHTWKRSSF-SGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYV 175
Query: 176 -SEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGA 234
++ ++ DL + + V T ET +++++ + P I++N RG
Sbjct: 176 SPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGG 235
Query: 235 HIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADL 294
+DE L A+ G + AGLDV+ EP + L VV+ PH+G+ T E
Sbjct: 236 LVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRAGTD 295
Query: 295 VIENLVAHFSNKPLLTPV 312
V E++ + + + V
Sbjct: 296 VAESVRLALAGEFVPDAV 313
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S metabolism,
2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo
sapiens}
Length = 335
Score = 200 bits (512), Expect = 9e-63
Identities = 71/254 (27%), Positives = 126/254 (49%), Gaps = 4/254 (1%)
Query: 58 DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
A++I++ L++V G+D +DL+ K + V NTP+ + A+L G+++ + R
Sbjct: 80 TADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLAR 139
Query: 118 RVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHS--- 174
++ + +K GKW+ F +G++ +GK++GI+GLGRIG +A R+++FG +
Sbjct: 140 QIPQATASMKDGKWERKKF-MGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPII 198
Query: 175 RSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGA 234
E S + + ++ C + V L T ++N ++N RG
Sbjct: 199 SPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGG 258
Query: 235 HIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADL 294
+DE L+ AL G+ AGA LDV+ EP ++ NV+ PH+G+ T+E +
Sbjct: 259 IVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCGEE 318
Query: 295 VIENLVAHFSNKPL 308
+ V K L
Sbjct: 319 IAVQFVDMVKGKSL 332
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 200 bits (512), Expect = 1e-62
Identities = 72/286 (25%), Positives = 126/286 (44%), Gaps = 25/286 (8%)
Query: 48 AVVGDTKCGADAELIDSLPT--LEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVA 105
+ A + + + ++ + +VG D ID+ K +R++N P +A
Sbjct: 47 GINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIA 106
Query: 106 DLAVGLVLAVLRRVCEFDEFVKSGKW-KNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVE 164
+ A+ L +LR + + +++G + K G F +G + ++VG++G G IG K +
Sbjct: 107 EFALTDTLYLLRNMGKVQAQLQAGDYEKAGTF-IGKELGQQTVGVMGTGHIGQVAIKLFK 165
Query: 165 AFGCPI----SYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDA 220
FG + Y + + D + Y ++ DL ++ + E+ HI+N +
Sbjct: 166 GFGAKVIAYDPYPMKGDHPDFD---YVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNL 222
Query: 221 LGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQ------------- 267
+ P I+IN R ID ++S L G+LAG G+D YE E E
Sbjct: 223 MKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWD 282
Query: 268 -MLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPV 312
+LG+ NVVL PH+ TE M +++LV + T V
Sbjct: 283 ELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGETSTEV 328
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 199 bits (509), Expect = 2e-62
Identities = 63/259 (24%), Positives = 130/259 (50%), Gaps = 11/259 (4%)
Query: 58 DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
++I+ L+I+A +GLD ID ++ + + ++V P TD +L +GL++A R
Sbjct: 59 TKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAAR 118
Query: 118 RVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYH---- 173
++ KSG +K G + +GK++GIVG GRIGT + A G + +
Sbjct: 119 KMYTSMALAKSGIFKK--I-EGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILD 175
Query: 174 SRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRG 233
R + N K + + +L N ++ + +++++ I++ + + + I++N R
Sbjct: 176 IREKAEKINAKAVS-LEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRA 234
Query: 234 AHIDEPELVSALLEGRLAGAGLDVYENEP---EVPEQMLGLNNVVLLPHVGSDTEETSKA 290
++ L+ + +G++ DV+ NEP E ++L V++ H+G+ T+E K
Sbjct: 235 VAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKR 294
Query: 291 MADLVIENLVAHFSNKPLL 309
+A++ +NL+ ++
Sbjct: 295 VAEMTTQNLLNAMKELGMI 313
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 195 bits (497), Expect = 1e-60
Identities = 69/318 (21%), Positives = 135/318 (42%), Gaps = 17/318 (5%)
Query: 1 MEKIGVLMTTPMSNYLEQELAARF--TLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGAD 58
++ +L++ ++Y AA ++ ++ +
Sbjct: 4 SQRTLLLLSQDNAHYERLLKAAHLPHLRILRADNQSD---AEKLIGEAHILMAEPA--RA 58
Query: 59 AELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRR 118
L+ L S G+D + LD + ++TN + +++ G +L+++R+
Sbjct: 59 KPLLAKANKLSWFQSTYAGVDVL-LDARCRRDYQLTNVRGIFGPLMSEYVFGHLLSLMRQ 117
Query: 119 VCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK 178
+ + E K W+ G+++ I+G G IG IA + FG + SRS +
Sbjct: 118 LPLYREQQKQRLWQ--SHPYQG-LKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGR 174
Query: 179 SDANY-KYYT--NIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAH 235
A + + Y + + + +++ T ETHH+ + P IL N+GRG
Sbjct: 175 ERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNA 234
Query: 236 IDEPELVSALLEGRLAGAGLDVYENEPEVPEQML-GLNNVVLLPHVGSDTEETSKAMADL 294
I+E +L++AL G+L A LDV+E EP + L G N+++ PH + + +A +
Sbjct: 235 INEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYS--FPDDVAQI 292
Query: 295 VIENLVAHFSNKPLLTPV 312
+ N + +PL +
Sbjct: 293 FVRNYIRFIDGQPLDGKI 310
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 179 bits (457), Expect = 1e-54
Identities = 66/263 (25%), Positives = 112/263 (42%), Gaps = 15/263 (5%)
Query: 60 ELIDSLPTLEIVASYSVGLDKIDLDKCK-----DKAVRVTNTPDV-LTDDVADLAVGLVL 113
+ + L+ V G+D I D ++ + D + + + AV VL
Sbjct: 52 VEMLAGRRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVL 111
Query: 114 AVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYH 173
RR ++ WK SVGI+G G +G +A+ ++A+G P+
Sbjct: 112 HWFRRFDDYQALKNQALWKPLPEYT---REEFSVGIMGAGVLGAKVAESLQAWGFPLRCW 168
Query: 174 SRSEKSDANYKYYT---NIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINI 230
SRS KS + Y + + ++LI T +T I+N +++D L ++N+
Sbjct: 169 SRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNL 228
Query: 231 GRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQML-GLNNVVLLPHVGSDTEETSK 289
RG H+ E +L++AL G+L GA LDV+ EP E L V + PH+ + T
Sbjct: 229 ARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAVTRP--A 286
Query: 290 AMADLVIENLVAHFSNKPLLTPV 312
D + + +P+ V
Sbjct: 287 EAIDYISRTITQLEKGEPVTGQV 309
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase;
HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A*
2pa3_A* 2p9g_A*
Length = 404
Score = 178 bits (454), Expect = 2e-53
Identities = 73/264 (27%), Positives = 123/264 (46%), Gaps = 13/264 (4%)
Query: 58 DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
++I++ L + ++++G +++DLD + + V N P T VA+L +G +L +LR
Sbjct: 60 TEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLR 119
Query: 118 RVCEFDEFVKSGKW---KNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHS 174
V E + G G FE GK +GI+G G IGT + E+ G + ++
Sbjct: 120 GVPEANAKAHRGVGNKLAAGSFEA----RGKKLGIIGYGHIGTQLGILAESLGMYVYFYD 175
Query: 175 RSEK-SDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRG 233
K N ++ DL + ++ + T +++ K I + P +LIN RG
Sbjct: 176 IENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRG 235
Query: 234 AHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQ-----MLGLNNVVLLPHVGSDTEETS 288
+D P L AL LAGA +DV+ EP + +NV+L PH+G T+E
Sbjct: 236 TVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQ 295
Query: 289 KAMADLVIENLVAHFSNKPLLTPV 312
+ + V L+ + N L+ V
Sbjct: 296 ENIGLEVAGKLIKYSDNGSTLSAV 319
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infect disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
Length = 416
Score = 175 bits (445), Expect = 8e-52
Identities = 70/261 (26%), Positives = 121/261 (46%), Gaps = 7/261 (2%)
Query: 58 DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
E+ + L V +SVG ++++L + + + V N P T VA+L +G ++ ++R
Sbjct: 71 TEEIFAAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMR 130
Query: 118 RVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE 177
R+ +G W+ + GK++GIVG G IG+ + E+ G + Y+ S+
Sbjct: 131 RIFPRSVSAHAGGWEKTAI-GSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSD 189
Query: 178 K-SDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHI 236
K N K ++ +L ++ + ++ T ++ + + LIN RG+ +
Sbjct: 190 KLQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDV 249
Query: 237 DEPELVSALLEGRLAGAGLDVYENEPEVPEQM-----LGLNNVVLLPHVGSDTEETSKAM 291
D L L EG LAGA +DV+ EP + GL NV+L PH+G TEE + +
Sbjct: 250 DLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQERI 309
Query: 292 ADLVIENLVAHFSNKPLLTPV 312
V LV + + V
Sbjct: 310 GTEVTRKLVEYSDVGSTVGAV 330
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 160 bits (407), Expect = 1e-46
Identities = 48/259 (18%), Positives = 98/259 (37%), Gaps = 27/259 (10%)
Query: 53 TKCGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLV 112
T+ + P + V + ++G D +DLD + + ++ P V D +G +
Sbjct: 47 TEV--SRAALAGSP-VRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCL 103
Query: 113 LAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISY 172
LA+ G+ + ++ G+VG G++G + + + G +
Sbjct: 104 LAMAEVR-------------------GADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLV 144
Query: 173 HSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEE----THHIVNRKVIDALGPSGILI 228
++ + ++ L + ++ + L + T H+++ + AL P L+
Sbjct: 145 CDPPRQAREPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLV 204
Query: 229 NIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETS 288
N RGA +D L L G LDV+E EP+ + L ++ PH+ + E
Sbjct: 205 NASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQ-ADPELAARCLIATPHIAGYSLEGK 263
Query: 289 KAMADLVIENLVAHFSNKP 307
+ + A
Sbjct: 264 LRGTAQIYQAYCAWRGIAE 282
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 159 bits (404), Expect = 3e-46
Identities = 55/259 (21%), Positives = 97/259 (37%), Gaps = 27/259 (10%)
Query: 53 TKCGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLV 112
TK + L+ P + V + + G D +D K + + P V + +
Sbjct: 50 TKV--NESLLSGTP-INFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSAL 106
Query: 113 LAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISY 172
L + R G +++GIVG+G +G+ + R+EA G
Sbjct: 107 LMLAER-------------------DGFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLL 147
Query: 173 HSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEE----THHIVNRKVIDALGPSGILI 228
+ + + + +L +L L ++ T H+ + +I L P ILI
Sbjct: 148 CDPPRAARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILI 207
Query: 229 NIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETS 288
N RG +D L++ L G+ LDV+E EP++ +L ++ H+ T E
Sbjct: 208 NACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAVDIG-TSHIAGYTLEGK 266
Query: 289 KAMADLVIENLVAHFSNKP 307
V E A +
Sbjct: 267 ARGTTQVFEAYSAFIGREQ 285
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 62.3 bits (151), Expect = 2e-11
Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 12/97 (12%)
Query: 144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA-------NYKYYTNIIDLASNC 196
G +V ++GLGR+G ++A++ A G + +R A + + +
Sbjct: 155 GANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDV 214
Query: 197 QILIVACSLTEETHHIVNRKVIDALGPSGILINIGRG 233
+ I +V V+ + +I++
Sbjct: 215 DVCINTI-----PALVVTANVLAEMPSHTFVIDLASK 246
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 42.5 bits (99), Expect = 8e-05
Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 146 SVGIVGLGRIGTAIAKRVEAFGCPIS-YHSRSEKSDA------NYKYYTNIIDLASNCQI 198
+ ++G G + T +AK + G I +SR+E+S +Y T++ ++ ++
Sbjct: 12 PIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKL 71
Query: 199 LIVACS 204
IV+
Sbjct: 72 YIVSLK 77
>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6
Length = 276
Score = 41.4 bits (96), Expect = 2e-04
Identities = 7/64 (10%), Positives = 16/64 (25%), Gaps = 5/64 (7%)
Query: 146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS-----DANYKYYTNIIDLASNCQILI 200
+ VG G + + ++ SRS + + ++
Sbjct: 4 VLNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVF 63
Query: 201 VACS 204
V
Sbjct: 64 VIVP 67
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.003
Identities = 30/190 (15%), Positives = 54/190 (28%), Gaps = 49/190 (25%)
Query: 111 LVLAVLR---RVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEA-- 165
+ L V C+ D + W N L + S ++V + L ++ I +
Sbjct: 166 VALDVCLSYKVQCKMDFKIF---WLN----LKNCNSPETV-LEMLQKLLYQIDPNWTSRS 217
Query: 166 -FGCPISYHSRSEK-------SDANYK---------YYTNIID-LASNCQILIVACSLTE 207
I S + Y+ + +C+IL+ T
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL----TTR 273
Query: 208 ETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEP-EVPE 266
++V D L HI L + L + P ++P
Sbjct: 274 ------FKQVTDFLSA-------ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 267 QMLGLNNVVL 276
++L N L
Sbjct: 321 EVLTTNPRRL 330
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 35.0 bits (80), Expect = 0.015
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 147 VGIVGLGRIGTAIAKRVEAFGCPISYHSRS-EKSDA 181
V I G G G ++ ++ G + + SR+ + S
Sbjct: 22 VCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVSSL 57
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP
oxidoreductase coenzyme F420-dependent, structural
genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum
WCFS1}
Length = 209
Score = 34.8 bits (79), Expect = 0.019
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 128 SGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDAN 182
S K + H F G + I G G +G AI E G ++Y+ +++
Sbjct: 3 SDKIHHHHHHENLYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQATTL 57
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB:
2vq3_A*
Length = 215
Score = 34.9 bits (80), Expect = 0.020
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 147 VGIVGLGRIGTAIAKRVEAFGCPISYHSRS 176
VGI+G G ++A R+ G + SR+
Sbjct: 31 VGILGSGDFARSLATRLVGSGFKVVVGSRN 60
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 33.8 bits (78), Expect = 0.026
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCPI 170
+ K ++GLGR G +I K + G +
Sbjct: 2 GRIKNKQFAVIGLGRFGGSIVKELHRMGHEV 32
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 33.5 bits (76), Expect = 0.065
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 126 VKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS 176
+ S K + H F G + ++G G +G +A + G ++ +R
Sbjct: 1 MGSDKIHHHHHHENLYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRD 51
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI,
M structural genomics; 1.70A {Archaeoglobus fulgidus}
Length = 141
Score = 32.2 bits (74), Expect = 0.093
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 145 KSVGIVGLGRIGTAIAKRVEAFGCPI 170
++G G + + + A G +
Sbjct: 7 YEYIVIGSEAAGVGLVRELTAAGKKV 32
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.11
Identities = 52/321 (16%), Positives = 88/321 (27%), Gaps = 105/321 (32%)
Query: 12 MSNYLEQELAARFTLFKLWTQSCKNK---FFQENSSAIR----AVVGDTKCGADAELIDS 64
N+ + F++ + + N F E IR A++ +T +
Sbjct: 1649 ADNHFKDTYG--FSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKI 1706
Query: 65 LPTL-EIVASYSVGLDKIDLDKCKDKAVRVT-NT-PDVLTDDVADLAVGLVLAVLRRVCE 121
+ E SY+ +K L T T P + + A L+
Sbjct: 1707 FKEINEHSTSYTFRSEKGLLSA--------TQFTQPALTLMEKA------AFEDLK---- 1748
Query: 122 FDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVE--AFGCPISYHSRSEKS 179
G + F+G S+G E A
Sbjct: 1749 ----------SKGLIPADATFAGHSLG---------------EYAALAS----------- 1772
Query: 180 DANYKYYTNIIDLASNCQILIVACSLTEE----THHIVNRKVIDALGPSG---ILINIGR 232
+++ + S + V R D LG S I IN GR
Sbjct: 1773 ------LADVMSIES-------LVEVVFYRGMTMQVAVPR---DELGRSNYGMIAINPGR 1816
Query: 233 GAHIDEPELVSALLEGRLAGAGLDV----YENEPEVPEQ------MLGLNNVV-LLPHVG 281
A E + ++E G V Y N +Q + L+ V +L +
Sbjct: 1817 VAASFSQEALQYVVERVGKRTGWLVEIVNY-NVE--NQQYVAAGDLRALDTVTNVLNFIK 1873
Query: 282 SDTEETSKAMADLVIENLVAH 302
+ + L +E + H
Sbjct: 1874 LQKIDIIELQKSLSLEEVEGH 1894
Score = 31.2 bits (70), Expect = 0.57
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 259 ENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHF 303
++EP P +++G L +V S E + D V+ + F
Sbjct: 51 DDEPTTPAELVGK----FLGYVSSLVEPSKVGQFDQVLNLCLTEF 91
Score = 29.6 bits (66), Expect = 1.5
Identities = 25/122 (20%), Positives = 41/122 (33%), Gaps = 29/122 (23%)
Query: 8 MTTPM-SNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLP 66
+ +P S+ L A+ L + N+ I+ V DT G+D ++
Sbjct: 423 VASPFHSHLLVP--ASDLINKDLVKNN-----VSFNAKDIQIPVYDTFDGSDLRVLSGSI 475
Query: 67 TLEIVASYSVGLDKIDLDKCK-DKAVRVTNT------PD------VLTDDVAD-LAVGLV 112
+ IV D I K + + T P VLT D V ++
Sbjct: 476 SERIV-------DCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVI 528
Query: 113 LA 114
+A
Sbjct: 529 VA 530
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.21
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 16/42 (38%)
Query: 32 QSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVAS 73
Q+ K K + S K AD DS P L I A+
Sbjct: 20 QALK-KL--QAS---------LKLYAD----DSAPALAIKAT 45
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Length = 144
Score = 30.9 bits (71), Expect = 0.26
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 11/90 (12%)
Query: 137 ELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS--------EKSDANYKYYTN 188
++ K G + +VG G + + IA ++ R+ EK + Y +
Sbjct: 14 DIVRKNGGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLIND 73
Query: 189 IIDLASNCQILIVACSLTEETHHIVNRKVI 218
I L N ++I A T IV + +
Sbjct: 74 IDSLIKNNDVIITA---TSSKTPIVEERSL 100
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 31.0 bits (71), Expect = 0.41
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 19/92 (20%)
Query: 141 KFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQIL 199
F +SV + G R IG AIA+R+ A G ++ R + +
Sbjct: 12 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK---------------GLF 56
Query: 200 IVACSLT--EETHHIVNRKVIDALGPSGILIN 229
V +T + V + GP +L++
Sbjct: 57 GVEVDVTDSDAVDRAFT-AVEEHQGPVEVLVS 87
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase,
proline biosynthesis, NAD(P protein, rossmann fold,
doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes}
SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Length = 259
Score = 30.9 bits (71), Expect = 0.44
Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS-EKSDANYKYY-----TNIIDLASNC 196
+ +GI+G+G++ +AI K ++ + S E+S + + DL
Sbjct: 2 NAMKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQV 61
Query: 197 QILIVA 202
++I+
Sbjct: 62 DLVILG 67
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 30.6 bits (70), Expect = 0.50
Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 7/106 (6%)
Query: 127 KSGKWKNGHFELGSKFSGKSVGIVGLGR-IGTAIAKRVEAFGC--PISYHSRSEKSDANY 183
SG G + + + G R IG AIA + A G ++Y S + +D
Sbjct: 11 SSGLVPRGSHMTALPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVV 70
Query: 184 KYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILIN 229
I + S E + VI+ G +L+N
Sbjct: 71 AA---IAAAGGEAFAVKADVSQESEVEALFA-AVIERWGRLDVLVN 112
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein
structure initiative, joint center for structural G
oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima}
SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Length = 253
Score = 30.8 bits (69), Expect = 0.50
Identities = 18/93 (19%), Positives = 28/93 (30%), Gaps = 8/93 (8%)
Query: 147 VGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLT 206
V I+G+G IG + + I + R K + S+ ++ S
Sbjct: 15 VLIIGMGNIGKKLVELGNF--EKIYAYDRISKDIPGVVRLDE-FQVPSDVSTVVECAS-- 69
Query: 207 EETHHIVNRKVIDALGPSGILINIGRGAHIDEP 239
V + L I I A DE
Sbjct: 70 ---PEAVKEYSLQILKNPVNYIIISTSAFADEV 99
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 30.8 bits (70), Expect = 0.53
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 14/90 (15%)
Query: 144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVAC 203
K V + G G++G A+ + A G PIS R + + A + +N ++IV+
Sbjct: 22 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAE--------SILANADVVIVSV 73
Query: 204 --SLTEETHHIVNRKVIDALGPSGILINIG 231
+LT E ++ L + +L ++
Sbjct: 74 PINLTLE----TIERLKPYLTENMLLADLT 99
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A
{Archaeoglobus fulgidus}
Length = 236
Score = 30.5 bits (68), Expect = 0.54
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 147 VGIVGLGRIGTAIAKRVEAFGCPI 170
VG++G G IG +A+ +E G I
Sbjct: 3 VGLIGYGAIGKFLAEWLERNGFEI 26
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi
DSS, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Length = 286
Score = 30.6 bits (69), Expect = 0.55
Identities = 6/37 (16%), Positives = 13/37 (35%)
Query: 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA 181
++ G G +++ + G I SR+
Sbjct: 6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQME 42
>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics,
pyrroline reductase, oxidoredu structural genomics
consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}
Length = 262
Score = 30.2 bits (69), Expect = 0.66
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 143 SGKSVGIVGLGRIGTAIAKR-VEAFGCPISYHSRSEKSDANY--KYYTNIIDLASNCQIL 199
+G +GLG++G+A+A A S N Y ++ +LA +C I+
Sbjct: 3 ENIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKNTTLNYMSSNEELARHCDII 62
Query: 200 IVA 202
+ A
Sbjct: 63 VCA 65
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 30.2 bits (69), Expect = 0.67
Identities = 11/91 (12%), Positives = 27/91 (29%), Gaps = 11/91 (12%)
Query: 141 KFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQIL 199
S + I G + +G A R+ G + R+E + +L +
Sbjct: 24 TLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVT--------ELRQAGAVA 75
Query: 200 IVA-CSLTEETHHIVNRKVIDALGPSGILIN 229
+ S ++ + +++
Sbjct: 76 LYGDFSCETGIMAFIDL-LKTQTSSLRAVVH 105
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase,
zinc-dependent, plant DE biosynthesis, substrate
inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB:
1yqx_A*
Length = 366
Score = 30.2 bits (69), Expect = 0.73
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 10/52 (19%)
Query: 135 HFELGSKFSGKSVGIV---GLGRIGTAIAKRVEAFGCPISYHSRSE--KSDA 181
+F L GK +GIV GLG + AK AFG ++ S S K +A
Sbjct: 181 YFGLDE--PGKHIGIVGLGGLGHVAVKFAK---AFGSKVTVISTSPSKKEEA 227
>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like
family; putative rossmann-like dehydrogenase, structural
genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Length = 232
Score = 30.0 bits (67), Expect = 0.78
Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 146 SVGIVGLGRIGTAIAKRVEAFGCPIS-YHSRSEKSDA 181
VGI G +A+++++ G ++ H+ + D
Sbjct: 8 RVGIFDDGSSTVNMAEKLDSVGHYVTVLHAPEDIRDF 44
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 30.2 bits (69), Expect = 0.80
Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 19/91 (20%)
Query: 142 FSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILI 200
+SV + G R IG AIA+ G ++ RS + L
Sbjct: 19 HMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPE---------------GFLA 63
Query: 201 VACSLT--EETHHIVNRKVIDALGPSGILIN 229
V C +T E+ ++ + GP +LI
Sbjct: 64 VKCDITDTEQVEQAYK-EIEETHGPVEVLIA 93
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK;
oxidoreductase, zinc binding, oxydoreductase,
metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2
c.2.1.1
Length = 369
Score = 29.9 bits (68), Expect = 0.94
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 9/47 (19%)
Query: 135 HFELGSKFSGKSVGIV---GLGRIGTAIAKRVEAFGCPISYHSRSEK 178
H++ G GK VG+V GLG +G +A A G + + SE
Sbjct: 189 HWQAGP---GKKVGVVGIGGLGHMGIKLAH---AMGAHVVAFTTSEA 229
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H)
oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Length = 348
Score = 29.9 bits (68), Expect = 0.96
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 11/52 (21%)
Query: 135 HFELGSKFSGKSVGIV---GLGRIGTAIAKRVEAFGCPISYHSRSE--KSDA 181
++ G VG+ GLG + A A G +S +R+E K DA
Sbjct: 171 FSKVTK---GTKVGVAGFGGLGSMAVKYAV---AMGAEVSVFARNEHKKQDA 216
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F
structural genomics, JCSG, protein structure initiative;
2.60A {Corynebacterium glutamicum atcc 13032}
Length = 341
Score = 30.0 bits (68), Expect = 0.97
Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS---------DANYKYYTNIIDLASN 195
+ V I+GLG IG ++ + + A + ++RS D + + A+
Sbjct: 9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAE 68
Query: 196 CQILIVA 202
++++A
Sbjct: 69 DALIVLA 75
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 29.8 bits (68), Expect = 1.0
Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 11/96 (11%)
Query: 139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCP--ISYHSRSEKSDANYKYYTNIIDLASN 195
GS + + + G +G AI++R+ G +S+ R++ + +
Sbjct: 20 GSMQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHER-----DAG 74
Query: 196 CQILIVACSLT--EETHHIVNRKVIDALGPSGILIN 229
A + E KV+ G +LIN
Sbjct: 75 RDFKAYAVDVADFESCERCA-EKVLADFGKVDVLIN 109
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold,
structural genomics; HET: NAP F42; 1.65A {Archaeoglobus
fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Length = 212
Score = 29.4 bits (65), Expect = 1.1
Identities = 30/171 (17%), Positives = 55/171 (32%), Gaps = 23/171 (13%)
Query: 147 VGIVGL-GRIGTAIAKRVEAFGCPISYHSRS-EKSDANYKYYTNII-----------DLA 193
V ++G G +G +A R+ G I SR EK++A Y I D A
Sbjct: 3 VALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAA 62
Query: 194 SNCQILIVACS-------LTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALL 246
C I ++ + + + + V+ L P + +G + ++
Sbjct: 63 EACDIAVLTIPWEHAIDTARDLKNILREKIVVSPLVP---VSRGAKGFTYSSERSAAEIV 119
Query: 247 EGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIE 297
L + + V D +E+ K + L+ E
Sbjct: 120 AEVLESEKVVSALHTIPAARFANLDEKFDWDVPVCGDDDESKKVVMSLISE 170
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 29.4 bits (67), Expect = 1.1
Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 11/94 (11%)
Query: 141 KFSGKSVGIVGLGR-IGTAIAKRVEAFGCP--ISYHSRSEKSDANYKYYTNIIDLASNCQ 197
+ I + +G + +++ A G ++YHS + + + Y +
Sbjct: 4 GRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYK-----DVEER 58
Query: 198 ILIVACSLT--EETHHIVNRKVIDALGPSGILIN 229
+ V +T E+ H IV + + G LIN
Sbjct: 59 LQFVQADVTKKEDLHKIVE-EAMSHFGKIDFLIN 91
>2wnf_A CMP-N-acetylneuraminate-beta-galactosamide-alpha-
2,3-sialyltransferase; glycosyltransferase, disulfide
bond, golgi apparatus, glycoprotein; HET: CG3 A2G GAL;
1.25A {Sus scrofa} PDB: 2wnb_A* 2wml_A
Length = 298
Score = 29.5 bits (65), Expect = 1.5
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 222 GPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDV 257
G SG L G ID + V + + G DV
Sbjct: 104 GNSGNLKESYYGPQIDSHDFVLRMNKAPTEGFEADV 139
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 29.0 bits (66), Expect = 1.5
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Query: 142 FSGKSVGIVGLGR-IGTAIAKRVEAFGCP--ISYHSRSEKSDANYKYYTNIIDLASNCQI 198
GK + G R IG AIA + G ++Y +K++ I L S+
Sbjct: 2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDE---IKKLGSDAIA 58
Query: 199 LIVACSLTEETHHIVNRKVIDALGPSGILIN 229
+ + E+ ++V + +D G IL+N
Sbjct: 59 VRADVANAEDVTNMVK-QTVDVFGQVDILVN 88
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in
PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent,
oxidoreductase; HET: NAP; 3.00A {Saccharomyces
cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Length = 360
Score = 29.4 bits (67), Expect = 1.6
Identities = 21/43 (48%), Positives = 23/43 (53%), Gaps = 8/43 (18%)
Query: 144 GKSVGIVGLGRIG---TAIAKRVEAFGCPISYHSRSE--KSDA 181
GK VGIVGLG IG T I+K A G SRS + DA
Sbjct: 180 GKKVGIVGLGGIGSMGTLISK---AMGAETYVISRSSRKREDA 219
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 29.0 bits (66), Expect = 1.7
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Query: 141 KFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQIL 199
+ GK+ + G R +G AIA ++ G I + + + N +
Sbjct: 2 QLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLD-ATAEEFKAAGINVVVA 60
Query: 200 IVACSLTEETHHIVNRKVIDALGPSGILIN 229
E+ ++V +DA G IL+N
Sbjct: 61 KGDVKNPEDVENMVK-TAMDAFGRIDILVN 89
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 29.0 bits (66), Expect = 1.8
Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 7/92 (7%)
Query: 141 KFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQIL 199
K GK + G R IG AIA+++ + G + S + I +
Sbjct: 4 KLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKA---VAEEIANKYGVKAH 60
Query: 200 IVACSLT--EETHHIVNRKVIDALGPSGILIN 229
V +L E + ++ + + IL+N
Sbjct: 61 GVEMNLLSEESINKAFE-EIYNLVDGIDILVN 91
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis,
metal-binding, NADP, oxidoreductase, zinc; 2.0A
{Arabidopsis thaliana} PDB: 2cf6_A*
Length = 357
Score = 29.1 bits (66), Expect = 1.8
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 10/52 (19%)
Query: 135 HFELGSKFSGKSVGIV---GLGRIGTAIAKRVEAFGCPISYHSRSE--KSDA 181
HF L G GI+ G+G +G IAK A G ++ S S + +A
Sbjct: 174 HFGLKQ--PGLRGGILGLGGVGHMGVKIAK---AMGHHVTVISSSNKKREEA 220
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 29.1 bits (66), Expect = 1.8
Identities = 24/115 (20%), Positives = 37/115 (32%), Gaps = 10/115 (8%)
Query: 117 RRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCP-ISYHS 174
EF + K +N ++ K + G GR IG IAK + I
Sbjct: 21 HMKLEFMNLLSENKKENYYYCG----ENKVALVTGAGRGIGREIAKMLAKSVSHVICISR 76
Query: 175 RSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILIN 229
+ D+ I S EE ++N K++ IL+N
Sbjct: 77 TQKSCDSVVDE---IKSFGYESSGYAGDVSKKEEISEVIN-KILTEHKNVDILVN 127
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 28.7 bits (64), Expect = 1.9
Identities = 17/80 (21%), Positives = 24/80 (30%), Gaps = 11/80 (13%)
Query: 198 ILIVACSLTEETHHIVNRKVIDALGPSGILI---------NIGRGAHIDEPELVS-ALLE 247
I+ + C L + KV L P G+ I G D L L+
Sbjct: 98 IVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQ 157
Query: 248 GRLAGAGLDVYEN-EPEVPE 266
L + N E + E
Sbjct: 158 SELPSLNWLIANNLERNLDE 177
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 29.1 bits (66), Expect = 1.9
Identities = 28/113 (24%), Positives = 41/113 (36%), Gaps = 13/113 (11%)
Query: 123 DEFVKSGKWKNGHFELGSKFS--GKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRS-EK 178
V G N F L +FS GK + G IG AIA G I ++ + E
Sbjct: 12 SGLVPRGSHMNQQFSL-DQFSLKGKIALVTGASYGIGFAIASAYAKAGATIVFNDINQEL 70
Query: 179 SDANYKYYTNIIDLASNCQILIVACSLT--EETHHIVNRKVIDALGPSGILIN 229
D Y A+ C +T + +V ++ +G IL+N
Sbjct: 71 VDRGMAAYK-----AAGINAHGYVCDVTDEDGIQAMVA-QIESEVGIIDILVN 117
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.14A {Thermotoga maritima}
Length = 337
Score = 28.8 bits (65), Expect = 2.3
Identities = 10/87 (11%), Positives = 26/87 (29%), Gaps = 15/87 (17%)
Query: 147 VGIVGLGRIGT----AIAKRVEAFG-CPISYHSRSEKSDA-------NYKYYTNIIDLAS 194
+ ++G + + G P K + K Y N ++
Sbjct: 5 ICVIGSSGHFRYALEGLDEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLE 64
Query: 195 NCQILIVACSLTEETHHIVNRKVIDAL 221
+ I+ + + + +++AL
Sbjct: 65 KEKPDILVINTVFSLNGKI---LLEAL 88
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain;
structural genomics, center for structural genomics of
infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium
difficile}
Length = 308
Score = 28.8 bits (65), Expect = 2.4
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 147 VGIVGLGRIGTAI-------AKRVEAFGC--PISYHSRSEKSDANYKYYTNIIDLASNCQ 197
+G++GLG I ++R E G P SD + +I LA C
Sbjct: 9 MGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCD 68
Query: 198 ILIVACSLTEETHHIVNRKVIDA 220
+ + S T ETH+ + + +++
Sbjct: 69 CIFL-HSST-ETHYEIIKILLNL 89
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment,
heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP:
c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*
Length = 294
Score = 28.7 bits (64), Expect = 2.5
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 7/80 (8%)
Query: 147 VGIVGLGRIGTAIA------KRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILI 200
V +VG+GR G+ + I + SR E + ++ D + +I +
Sbjct: 10 VVVVGVGRAGSVRLRDLKDPRSAAFLNL-IGFVSRRELGSLDEVRQISLEDALRSQEIDV 68
Query: 201 VACSLTEETHHIVNRKVIDA 220
+H R+ + A
Sbjct: 69 AYICSESSSHEDYIRQFLQA 88
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 28.2 bits (64), Expect = 2.7
Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
Query: 143 SGKSVGIVGLGR-IGTAIAKRVEAFGC--PISYHSRSEKSDANYKYYTNIIDLASNCQIL 199
KS + G R IG +IA ++ G ++Y EK++A + I + +
Sbjct: 3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEE---IKAKGVDSFAI 59
Query: 200 IVACSLTEETHHIVNRKVIDALGPSGILIN 229
+ +E ++ +V+ G +L+N
Sbjct: 60 QANVADADEVKAMIK-EVVSQFGSLDVLVN 88
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 28.6 bits (64), Expect = 2.9
Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 12/94 (12%)
Query: 144 GKSVGIVGLGRIGTAIAKRVEAFGCP-----ISYHSRSEKSDANYK--YYTNIIDLASNC 196
G V ++GLGR G IA+ A G S + ++ + + + +
Sbjct: 157 GSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDI 216
Query: 197 QILIVACSLTEETHHIVNRKVIDALGPSGILINI 230
I I I+N+ V+ ++ P +++++
Sbjct: 217 DICINT-----IPSMILNQTVLSSMTPKTLILDL 245
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 28.3 bits (64), Expect = 2.9
Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 11/93 (11%)
Query: 142 FSGKSVGIVGLGR-IGTAIAKRVEAFGCP--ISYHSRSEKSDANYKYYTNIIDLASNCQI 198
S + + G IGT+I +R+ G S + + A
Sbjct: 11 MSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQK-----ALGFDF 65
Query: 199 LIVACSLT--EETHHIVNRKVIDALGPSGILIN 229
++ + T KV +G +L+N
Sbjct: 66 YASEGNVGDWDSTKQAF-DKVKAEVGEIDVLVN 97
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 28.3 bits (64), Expect = 3.0
Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 10/90 (11%)
Query: 143 SGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIV 201
+G++ + G G IG AIA G + R++ V
Sbjct: 30 AGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGVKEVADEIA-----DGGGSAEAV 84
Query: 202 ACSLT--EETHHIVNRKVIDALGPSGILIN 229
L E ++ + A +L+N
Sbjct: 85 VADLADLEGAANVAEE--LAATRRVDVLVN 112
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 28.3 bits (64), Expect = 3.0
Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 13/96 (13%)
Query: 140 SKFSGKSVGIVGLGR-IGTAIAKRVEAFGCP--ISYHSRSEKSDANYKYYTNIIDLASNC 196
+F+ +++ + G GR IG A A R G ++Y+ +E +
Sbjct: 4 QRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIE-----KLGR 58
Query: 197 QILIVACSLTEETHHIVNR---KVIDALGPSGILIN 229
L + LT V D G L++
Sbjct: 59 SALAIKADLTNAAE--VEAAISAAADKFGEIHGLVH 92
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 28.4 bits (64), Expect = 3.3
Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 12/99 (12%)
Query: 139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCP--ISYHSRSEKSDANYKYYTNIIDLASN 195
GS + + G + IG AIA ++ G I YH+ +E + + ++ +
Sbjct: 18 GSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADE----LNKERS 73
Query: 196 CQILIVACSLTEETHHIVN-----RKVIDALGPSGILIN 229
++ LT + A G +L+N
Sbjct: 74 NTAVVCQADLTNSNVLPASCEEIINSCFRAFGRCDVLVN 112
>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP,
oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo
sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*
Length = 322
Score = 28.4 bits (64), Expect = 3.4
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 11/72 (15%)
Query: 142 FSGKSVGIVGLGRIGTAIAKRVEAFG---------CPISYHSRSEKSDANY--KYYTNII 190
F SVG +G G++ A+AK A G + + K +
Sbjct: 20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNK 79
Query: 191 DLASNCQILIVA 202
+ + +L +A
Sbjct: 80 ETVQHSDVLFLA 91
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown
function, PSI-2, protein structure initiative; 1.44A
{Methylobacillus flagellatus KT}
Length = 286
Score = 28.1 bits (63), Expect = 3.5
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA 181
+ I G G +G +A+R+ A G ++ RS +
Sbjct: 4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMP 40
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell
cycle, cell division, cell shape, cell WAL
biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia
coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A*
2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A*
2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Length = 439
Score = 28.3 bits (64), Expect = 3.8
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 140 SKFSGKSVGIVGLGRIGTAIAK 161
+ + GK+V I+GLG G +
Sbjct: 1 ADYQGKNVVIIGLGLTGLSCVD 22
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 27.8 bits (63), Expect = 3.9
Identities = 13/91 (14%), Positives = 31/91 (34%), Gaps = 6/91 (6%)
Query: 141 KFSGKSVGIVGLGR-IGTAIAKRVEAFGCP-ISYHSRSEKSDANYKYYTNIIDLASNCQI 198
+ K + G R IG +A + + G + + ++ + + +
Sbjct: 2 SLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENS---MKEKGFKARG 58
Query: 199 LIVACSLTEETHHIVNRKVIDALGPSGILIN 229
L++ S E + ++ IL+N
Sbjct: 59 LVLNISDIESIQNFFA-EIKAENLAIDILVN 88
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium
channel, BK channel, rossmann fold, membrane protein;
2.40A {Escherichia coli} SCOP: c.2.1.9
Length = 153
Score = 27.4 bits (61), Expect = 4.2
Identities = 2/22 (9%), Positives = 7/22 (31%)
Query: 149 IVGLGRIGTAIAKRVEAFGCPI 170
+ G + ++ G +
Sbjct: 8 VCGHSILAINTILQLNQRGQNV 29
>2v6e_A Protelemorase; hairpin telomere, hydrolase, resolvase,
protelomerase, DNA distortion; 3.20A {Klebsiella phage
PHIKO2}
Length = 558
Score = 28.1 bits (61), Expect = 4.3
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 11/82 (13%)
Query: 69 EIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTD-----DVADLAVGLVLAVLRRVCEFD 123
+++ + ID + + N P V D +A LA L RR
Sbjct: 241 NVLSEKKRNVVVIDYPRYMQAIYDIINKPIVSFDLTTRRGMAPLAFALAALSGRR---MI 297
Query: 124 EFVKSGKWK-NGHFELGSKFSG 144
E + G++ G + + F G
Sbjct: 298 EIMLQGEFSVAGKYTV--TFLG 317
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 27.9 bits (63), Expect = 4.5
Identities = 14/92 (15%), Positives = 33/92 (35%), Gaps = 7/92 (7%)
Query: 141 KFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQIL 199
G+SV + G + IG IA G ++ RS +D + +++
Sbjct: 7 DLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDA---CVADLDQLGSGKVI 63
Query: 200 IVACSLT--EETHHIVNRKVIDALGPSGILIN 229
V ++ + + + ++ G ++
Sbjct: 64 GVQTDVSDRAQCDALAG-RAVEEFGGIDVVCA 94
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 27.9 bits (63), Expect = 4.5
Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 6/90 (6%)
Query: 142 FSGKSVGIVGLGR-IGTAIAKRVEAFGCP-ISYHSRSEKSDANYKYYTNIIDLASNCQIL 199
+ + G R IG AIA + G I + ++ +
Sbjct: 26 LDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAA---FKQAGLEGRGA 82
Query: 200 IVACSLTEETHHIVNRKVIDALGPSGILIN 229
++ + +V + G +L+N
Sbjct: 83 VLNVNDATAVDALVE-STLKEFGALNVLVN 111
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 27.5 bits (62), Expect = 4.7
Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 7/90 (7%)
Query: 141 KFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQIL 199
K +G+ + G IG AIA+ A G + H E L + +
Sbjct: 24 KLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAAD-----LGKDVFVF 78
Query: 200 IVACSLTEETHHIVNRKVIDALGPSGILIN 229
S + + + IL+N
Sbjct: 79 SANLSDRKSIKQLAE-VAEREMEGIDILVN 107
>1t10_A GPI, glucose-6-phosphate isomerase, PGI, phosphohexose;
phosphoglucose isomerase, substrate,
D-fructose-6-phosphate; HET: F6P; 2.35A {Leishmania
mexicana mexicana} SCOP: c.80.1.2
Length = 605
Score = 28.1 bits (63), Expect = 5.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 112 VLAVLRRVCEFDEFVKSGKWK 132
V VL ++ +F E V+SG+WK
Sbjct: 169 VNNVLAQMKDFTERVRSGEWK 189
>3qki_A Glucose-6-phosphate isomerase; structural genomics, structural
genomics consortium, SGC; 1.92A {Plasmodium falciparum}
PDB: 3pr3_A
Length = 597
Score = 28.1 bits (63), Expect = 5.0
Identities = 8/46 (17%), Positives = 20/46 (43%), Gaps = 10/46 (21%)
Query: 112 VLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSV-GIVGLGRIG 156
V VL+++ ++ + +++G K ++ +G IG
Sbjct: 139 VHGVLKKIEKYSDDIRNGVIKT--------CKNTKFKNVICIG-IG 175
>2cxn_A Glucose-6-phosphate isomerase; 1.40A {Mus musculus} PDB: 2cvp_A
2cxo_A* 2cxp_A* 2cxq_A* 2cxr_A* 2cxs_A* 2cxt_A* 2cxu_A
1u0e_A 1u0f_A* 1u0g_A* 1jiq_A 1iri_A 1nuh_A* 1jlh_A
1iat_A 1hm5_A 1g98_A 1hox_A* 1xtb_A* ...
Length = 557
Score = 28.0 bits (63), Expect = 5.2
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 10/46 (21%)
Query: 112 VLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVG-IVGLGRIG 156
V VL ++ F + V+SG WK ++GKS+ I+ +G IG
Sbjct: 122 VNRVLDKMKSFCQRVRSGDWKG--------YTGKSITDIINIG-IG 158
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 27.5 bits (62), Expect = 5.6
Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 7/90 (7%)
Query: 141 KFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQIL 199
GK + G R IG AIA+ + G + + SE Y L N + +
Sbjct: 6 NLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDY-----LGDNGKGM 60
Query: 200 IVACSLTEETHHIVNRKVIDALGPSGILIN 229
+ + E ++ + D G IL+N
Sbjct: 61 ALNVTNPESIEAVLK-AITDEFGGVDILVN 89
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural
genomics, NYSGXRC, PSI, protein structure initiative;
2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Length = 319
Score = 27.3 bits (61), Expect = 6.0
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 11/83 (13%)
Query: 147 VGIVGLGRIGTAIA-------KRVEAFG-CPISYHSRSEKSDA-NYKYYTNIIDLASNCQ 197
+G+VGLG I G + ++ Y ++ LA++C
Sbjct: 8 IGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCD 67
Query: 198 ILIVACSLTEETHHIVNRKVIDA 220
+ V S T +H V +++A
Sbjct: 68 AVFV-HSST-ASHFDVVSTLLNA 88
>3hjb_A Glucose-6-phosphate isomerase; PGI, IDP01329, gluconeogenesi
glycolysis, structural genomics, center for STRU
genomics of infectious diseases; HET: PG4; 1.50A {Vibrio
cholerae} PDB: 3nbu_A
Length = 574
Score = 27.6 bits (62), Expect = 6.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 112 VLAVLRRVCEFDEFVKSGKWK 132
V AVL ++ F E V G+WK
Sbjct: 145 VNAVLAKMKAFSERVIGGEWK 165
>3ljk_A Glucose-6-phosphate isomerase; structural genomics, IDP02733,
cytoplasm, gluconeogenesis, glycolysis; HET: MSE MES;
1.48A {Francisella tularensis} PDB: 3m5p_A* 3q7i_A*
3q88_A*
Length = 543
Score = 27.6 bits (62), Expect = 6.4
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 10/46 (21%)
Query: 112 VLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSV-GIVGLGRIG 156
V +RV E E V SG+W+ FSGK + IV +G IG
Sbjct: 113 VTKEKQRVKELVEKVVSGRWRG--------FSGKKITDIVNIG-IG 149
>3l6d_A Putative oxidoreductase; structural genomics, protein structure
initiative, oxidoredu PSI-2; HET: MSE; 1.90A
{Pseudomonas putida}
Length = 306
Score = 27.3 bits (61), Expect = 6.4
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRS-EKSDA 181
V ++GLG +GT +A+ + G ++ +RS K+ A
Sbjct: 11 DVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAA 47
>3ujh_A Glucose-6-phosphate isomerase; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease; HET: G6Q;
2.10A {Toxoplasma gondii}
Length = 567
Score = 27.6 bits (62), Expect = 6.4
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 90 AVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWK 132
A+R+ + + D ++ + V AVLRR+ F E V+SG+ +
Sbjct: 103 ALRMPEGSEPVHVDGKNV-LDEVHAVLRRIRVFSEKVRSGEIR 144
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 27.5 bits (62), Expect = 6.4
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 140 SKFSGKSVGIVGLGRIGTAIAK 161
+ F K V ++GL R G A A+
Sbjct: 5 TTFENKKVLVLGLARSGEAAAR 26
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 27.0 bits (60), Expect = 6.8
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 149 IVGLGRIGTAIAKRVEA 165
I+G+GRIGT + A
Sbjct: 44 ILGMGRIGTGAYDELRA 60
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 27.1 bits (61), Expect = 6.8
Identities = 13/92 (14%), Positives = 24/92 (26%), Gaps = 13/92 (14%)
Query: 141 KFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQIL 199
+ K+V I G IG A + G + E + A
Sbjct: 2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLR---------EAAEAVGAH 52
Query: 200 IVACSLT--EETHHIVNRKVIDALGPSGILIN 229
V + + + LG +++
Sbjct: 53 PVVMDVADPASVERGFA-EALAHLGRLDGVVH 83
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 27.1 bits (61), Expect = 7.3
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 3/46 (6%)
Query: 140 SKFSGKSVGIVGLGR-IGTAIAKRVEAFGCP--ISYHSRSEKSDAN 182
K + I G + +G AK + YH + AN
Sbjct: 7 HDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTAN 52
>4em6_D Glucose-6-phosphate isomerase; GPI, phosphoglucose isomerase
phosphohexose isomerase, PHI, ssgcid; 1.90A {Brucella
melitensis BV}
Length = 553
Score = 27.2 bits (61), Expect = 7.5
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 10/46 (21%)
Query: 112 VLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSV-GIVGLGRIG 156
V VL R+ F + ++SG K +G+ + IV +G IG
Sbjct: 123 VKHVLDRMAAFADGIRSGALKG--------ATGRKITDIVNIG-IG 159
>2wu8_A Glucose-6-phosphate isomerase; gluconeogenesis,
5-phosphoarabinonate (PAB), PGI, cytoplasm, glycolysis;
2.25A {Mycobacterium tuberculosis}
Length = 549
Score = 27.2 bits (61), Expect = 7.6
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 112 VLAVLRRVCEFDEFVKSGKWK 132
V AVL + F + ++SG+W
Sbjct: 116 VHAVLDAMGAFTDRLRSGEWT 136
>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase,
CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP:
a.100.1.1 c.2.1.6
Length = 478
Score = 27.3 bits (61), Expect = 7.6
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 147 VGIVGLGRIGTAIAKRVEAFGCPISYHSRS-EKSDA 181
VG+VGLG +G +A + G ++ +R+ KS+
Sbjct: 4 VGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEE 39
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 26.9 bits (60), Expect = 8.3
Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 7/95 (7%)
Query: 141 KFSGKSVGIVGLGR-IGTAIAKRVEAFGCP--ISYHSRSEKSDANYKYYTNIIDL-ASNC 196
GK++ I G R IG AIAKRV A G + S YT ++ +
Sbjct: 6 SLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGG 65
Query: 197 QILIVACSLTEET--HHIVNRKVIDALGPSGILIN 229
Q L + + + V + ++ G I +N
Sbjct: 66 QALPIVGDIRDGDAVAAAVAK-TVEQFGGIDICVN 99
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 26.8 bits (60), Expect = 8.4
Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 7/92 (7%)
Query: 141 KFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQIL 199
S +SV + G + IG IA G ++ +RS + ++ T + ++
Sbjct: 38 DLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSS---VTAELGELGAGNVI 94
Query: 200 IVACSLT--EETHHIVNRKVIDALGPSGILIN 229
V ++ V+DA G ++
Sbjct: 95 GVRLDVSDPGSCADAAR-TVVDAFGALDVVCA 125
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.390
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,930,193
Number of extensions: 308646
Number of successful extensions: 1061
Number of sequences better than 10.0: 1
Number of HSP's gapped: 958
Number of HSP's successfully gapped: 152
Length of query: 313
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 220
Effective length of database: 4,105,140
Effective search space: 903130800
Effective search space used: 903130800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)