BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021362
(313 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C8U|A Chain A, Crystal Structure Of Putative Fructose Transport System
Kinase (Yp_612366.1) From Silicibacter Sp. Tm1040 At
1.95 A Resolution
Length = 208
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 95/201 (47%), Gaps = 18/201 (8%)
Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ 166
+ +V L+G PG+GKSTL+ + A++ +Q P A V+P DGFHL
Sbjct: 22 RQLVALSGAPGSGKSTLSNPL-----------AAALSAQGLP---AEVVPXDGFHLD--- 64
Query: 167 LDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXXXQGSVYAPSFDHGVGDPVEDDILVGLQ 226
+ + +P+ R+GAP TF Q V P FD + VG +
Sbjct: 65 -NRLLEPRGLLPRKGAPETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPE 123
Query: 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRI 286
+V I++GNYL D W+D+++++D +EV R+++R + G D A R
Sbjct: 124 CRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPXADLEARLVQRWLDHGLNHDAAVARA 183
Query: 287 EYNDRPNAELIMKSKKNADLV 307
+ ND NA I ++ ADL
Sbjct: 184 QGNDLANARAIEAARLPADLT 204
>pdb|2GA8|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae: A
Putative P-Loop Containing Kinase With A Circular
Permutation.
pdb|2GAA|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae: A
Putative P-Loop Containing Kinase With A Circular
Permutation
Length = 359
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 73/173 (42%), Gaps = 34/173 (19%)
Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXXXQG------- 202
++A ++PMDGFHL LD +DP+ AH RRG+P TF
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLXKVSSH 213
Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
++ P F+H + DP D + ++VI++G YL D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273
Query: 241 GGVWKDVSSMFDEK-----WFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEY 288
WK + + + I++D + +RV KRH+ +G +A+ R ++
Sbjct: 274 QENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQSGLVTTIAEGREKF 326
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIW 135
N + V L G PG+GKST+A E+ + IN+ +
Sbjct: 22 NYRVCVILVGSPGSGKSTIAEELXQIINEKY 52
>pdb|1XRJ|A Chain A, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
pdb|1XRJ|B Chain B, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
Length = 261
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 88/207 (42%), Gaps = 27/207 (13%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
++G++G +GKS++ A++V+ + + + D + K +L D F+ L+
Sbjct: 22 LIGVSGGTASGKSSVCAKIVQLLGQ------NEVDYRQKQ---VVILSQDSFYRVLT--- 69
Query: 169 AMEDPKEAHARRGA-----PWTFXXXXXXXXXXXXXXQGSVYAPSFDHGVGDPVEDDILV 223
++A A +G P F +V P +D V +++ +
Sbjct: 70 ---SEQKAKALKGQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDF-VSHSRKEETVT 125
Query: 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKPPD-V 281
VV+ +G F ++V +F K F++ D DT + R + R IS G+ + +
Sbjct: 126 VYPADVVLFEGILAFYS----QEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQI 181
Query: 282 AKWRIEYNDRPNAELIMKSKKNADLVI 308
I + E + +KK AD++I
Sbjct: 182 LSQYITFVKPAFEEFCLPTKKYADVII 208
>pdb|1UDW|A Chain A, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With A Feedback-inhibitor, Ctp
pdb|1UDW|B Chain B, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With A Feedback-inhibitor, Ctp
pdb|1UEI|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Feedback-Inhibitor, Utp
pdb|1UEI|B Chain B, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Feedback-Inhibitor, Utp
pdb|1UEJ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Substrate, Cytidine
pdb|1UEJ|B Chain B, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Substrate, Cytidine
pdb|1UFQ|A Chain A, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|B Chain B, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|C Chain C, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|D Chain D, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UJ2|A Chain A, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With Products, Cmp And Adp
pdb|1UJ2|B Chain B, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With Products, Cmp And Adp
Length = 252
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 88/207 (42%), Gaps = 27/207 (13%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
++G++G +GKS++ A++V+ + + + D + K +L D F+ L+
Sbjct: 24 LIGVSGGTASGKSSVCAKIVQLLGQ------NEVDYRQKQ---VVILSQDSFYRVLT--- 71
Query: 169 AMEDPKEAHARRGA-----PWTFXXXXXXXXXXXXXXQGSVYAPSFDHGVGDPVEDDILV 223
++A A +G P F +V P +D V +++ +
Sbjct: 72 ---SEQKAKALKGQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDF-VSHSRKEETVT 127
Query: 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKPPD-V 281
VV+ +G F ++V +F K F++ D DT + R + R IS G+ + +
Sbjct: 128 VYPADVVLFEGILAFYS----QEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQI 183
Query: 282 AKWRIEYNDRPNAELIMKSKKNADLVI 308
I + E + +KK AD++I
Sbjct: 184 LSQYITFVKPAFEEFCLPTKKYADVII 210
>pdb|3TQC|A Chain A, Structure Of The Pantothenate Kinase (Coaa) From Coxiella
Burnetii
pdb|3TQC|B Chain B, Structure Of The Pantothenate Kinase (Coaa) From Coxiella
Burnetii
Length = 321
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 92/241 (38%), Gaps = 48/241 (19%)
Query: 72 QREIPVVEARCMDEVYDALAQRLLPTSALASNV--------------NVKHIVGLAGPPG 117
Q +I +V + + E+Y L+ RLL A V +I+G+AG
Sbjct: 44 QGQIEIVSLKEVTEIYLPLS-RLLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVA 102
Query: 118 AGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177
GKST + V++ + WP P+V V+ DGF LY +A + +
Sbjct: 103 VGKST-TSRVLKALLSRWPDH----------PNVE-VITTDGF-LY---SNAKLEKQGLM 146
Query: 178 ARRGAPWTFXX-XXXXXXXXXXXXQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236
R+G P ++ Q +V P + H D V + Q +VI++G
Sbjct: 147 KRKGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLN 206
Query: 237 LFLDGGVWKD-------VSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYN 289
+ L GV K VS FD F++ + + R +S WR +
Sbjct: 207 I-LQTGVRKTLQQLQVFVSDFFDFSLFVDAQAQVIQKWYIDRVLSF--------WRTTFK 257
Query: 290 D 290
D
Sbjct: 258 D 258
>pdb|2V3C|C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
pdb|2V3C|D Chain D, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
Length = 432
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 21/95 (22%)
Query: 56 RSLVQNKTSLKVLCSQQREIPVVEARCMDE---------------VYDALAQRLLPTSAL 100
R+L+Q ++K++ +EI E R ++E VY+ L +LL A
Sbjct: 35 RALIQADVNVKLVLKMSKEI---ERRALEEKTPKGLSKKEHIIKIVYEELV-KLLGEEAK 90
Query: 101 ASNVNVK--HIVGLAGPPGAGKSTLAAEVVRRINK 133
+N K +++ L G G+GK+T AA++ R I K
Sbjct: 91 KLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQK 125
>pdb|3NDB|B Chain B, Crystal Structure Of A Signal Sequence Bound To The Signal
Recognition Particle
Length = 454
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 21/95 (22%)
Query: 56 RSLVQNKTSLKVLCSQQREIPVVEARCMDE---------------VYDALAQRLLPTSAL 100
R+L+Q ++K++ +EI E R ++E VY+ L +LL A
Sbjct: 35 RALIQADVNVKLVLKMSKEI---ERRALEEKTPKGLSKKEHIIKIVYEELV-KLLGEEAK 90
Query: 101 ASNVNVK--HIVGLAGPPGAGKSTLAAEVVRRINK 133
+N K +++ L G G+GK+T AA++ R I K
Sbjct: 91 KLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQK 125
>pdb|1W5S|A Chain A, Structure Of The Aeropyrum Pernix Orc2 Protein (Adp Form)
pdb|1W5S|B Chain B, Structure Of The Aeropyrum Pernix Orc2 Protein (Adp Form)
pdb|1W5T|A Chain A, Structure Of The Aeropyrum Pernix Orc2 Protein (Adpnp-Adp
Complexes)
pdb|1W5T|B Chain B, Structure Of The Aeropyrum Pernix Orc2 Protein (Adpnp-Adp
Complexes)
pdb|1W5T|C Chain C, Structure Of The Aeropyrum Pernix Orc2 Protein (Adpnp-Adp
Complexes)
Length = 412
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
Query: 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK 138
EA + +Y RLL + L S+VN+ I G G G GK+TLA V+R+++ ++
Sbjct: 30 EAEALARIY---LNRLLSGAGL-SDVNM--IYGSIGRVGIGKTTLAKFTVKRVSEAAAKE 83
Query: 139 A----SSFDSQVKPPDVATVLPM 157
++ + P++ T+L +
Sbjct: 84 GLTVKQAYVNAFNAPNLYTILSL 106
>pdb|2JEO|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1
pdb|2UVQ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1 In
Complex With Adp
Length = 245
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 41/210 (19%), Positives = 88/210 (41%), Gaps = 34/210 (16%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ 166
++G++G +GKST+ +++ + N++ ++ +L D F+ L+
Sbjct: 27 LIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRK-----------VVILSQDRFYKVLTA 75
Query: 167 LDAMEDPKEAHARRGA-----PWTFXXXXXXXXXXXXXXQGSVYAPSFDHGVGDPVEDDI 221
++A A +G P F +V P++D + +
Sbjct: 76 ------EQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETT 129
Query: 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDV 281
+V VV+ +G +F +++ MF + F++ D D + R + R + G+ D+
Sbjct: 130 VV-YPADVVLFEGILVFYS----QEIRDMFHLRLFVDTDSDVRLSRRVLRDVRRGR--DL 182
Query: 282 AKWRIEYND--RPN-AELIMKSKKNADLVI 308
+ +Y +P E + +KK AD++I
Sbjct: 183 EQILTQYTTFVKPAFEEFCLPTKKYADVII 212
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 20/82 (24%)
Query: 84 DEVYDALAQRLLPTSALASNVNVKHIVG------------------LAGPPGAGKSTLAA 125
D + LA R+ P + LA + +H++ L GPPG GK+TL A
Sbjct: 10 DNTFQPLAARMRPEN-LAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTL-A 67
Query: 126 EVVRRINKIWPQKASSFDSQVK 147
EV+ R ++ S+ S VK
Sbjct: 68 EVIARYANADVERISAVTSGVK 89
>pdb|2WWW|A Chain A, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|B Chain B, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|C Chain C, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|D Chain D, Crystal Structure Of Methylmalonic Acidemia Type A Protein
Length = 349
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/14 (85%), Positives = 13/14 (92%)
Query: 110 VGLAGPPGAGKSTL 123
VGL+GPPGAGKST
Sbjct: 77 VGLSGPPGAGKSTF 90
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 93 RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVA 152
R+ +A A ++H++ L GPPG GK+TLA + + + +S + KP D+A
Sbjct: 25 RVYLEAAKARKEPLEHLL-LFGPPGLGKTTLAHVIAHELG--VNLRVTSGPAIEKPGDLA 81
Query: 153 TVLP---MDGFHLYLSQLDAMEDPKEAH 177
+L +G L++ ++ + E H
Sbjct: 82 AILANSLEEGDILFIDEIHRLSRQAEEH 109
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 93 RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVA 152
R+ +A A ++H++ L GPPG GK+TLA + + + +S + KP D+A
Sbjct: 25 RVYLEAAKARKEPLEHLL-LFGPPGLGKTTLAHVIAHELGVNL--RVTSGPAIEKPGDLA 81
Query: 153 TVLP---MDGFHLYLSQLDAMEDPKEAH 177
+L +G L++ ++ + E H
Sbjct: 82 AILANSLEEGDILFIDEIHRLSRQAEEH 109
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK 133
I+ LAGPPG GK++LA + + + +
Sbjct: 110 ILCLAGPPGVGKTSLAKSIAKSLGR 134
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP- 156
+A A ++H++ L GPPG GK+TLA + + + +S + KP D+A +L
Sbjct: 30 AAKARKEPLEHLL-LFGPPGLGKTTLAHVIAHELGVNL--RVTSGPAIEKPGDLAAILAN 86
Query: 157 --MDGFHLYLSQLDAMEDPKEAH 177
+G L++ ++ + E H
Sbjct: 87 SLEEGDILFIDEIHRLSRQAEEH 109
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 81 RCMDEVY--DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129
R +DEV D + QRL N+ H++ +GPPG GK+ A + R
Sbjct: 14 RTLDEVVGQDEVIQRL---KGYVERKNIPHLL-FSGPPGTGKTATAIALAR 60
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 81 RCMDEVY--DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129
R +DEV D + QRL N+ H++ +GPPG GK+ A + R
Sbjct: 14 RTLDEVVGQDEVIQRL---KGYVERKNIPHLL-FSGPPGTGKTATAIALAR 60
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 100 LASNVNVKHIVGLAGPPGAGKSTLAAEV 127
L+ V I+ L GP GAGKSTL A +
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARM 46
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 100 LASNVNVKHIVGLAGPPGAGKSTLAAEV 127
L+ V I+ L GP GAGKSTL A +
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARM 46
>pdb|3NWP|A Chain A, Crystal Structure Of A 6-Phosphogluconolactonase
(Sbal_2240) From Shewanella Baltica Os155 At 1.40 A
Resolution
pdb|3NWP|B Chain B, Crystal Structure Of A 6-Phosphogluconolactonase
(Sbal_2240) From Shewanella Baltica Os155 At 1.40 A
Resolution
Length = 233
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 244 WKDVS-SMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWR 285
W DV ++ DE+W +E D D + +R+++ H+ + + AK+R
Sbjct: 63 WSDVYITLADERW-VEADADASNERLVREHLLQNRASN-AKFR 103
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 110 VGLAGPPGAGKSTLAAEVVRRINKIWP 136
VGL G P AGKS+L A + R KI P
Sbjct: 160 VGLVGYPNAGKSSLLAAMTRAHPKIAP 186
>pdb|1YE8|A Chain A, Crystal Structure Of Thep1 From The Hyperthermophile
Aquifex Aeolicus
Length = 178
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 112 LAGPPGAGKSTLAAEVVRRINK 133
+ G PG GK+TL ++V R+ K
Sbjct: 5 ITGEPGVGKTTLVKKIVERLGK 26
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 100 LASNVNVKHIVGLAGPPGAGKSTLAA 125
L+ V I+ L GP GAGKSTL A
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLA 44
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 100 LASNVNVKHIVGLAGPPGAGKSTLAA 125
L+ V I+ L GP GAGKSTL A
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLA 44
>pdb|2XZL|A Chain A, Upf1-Rna Complex
Length = 802
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 112 LAGPPGAGKSTLAAEVVRRINKI 134
+ GPPG GK+ +A +V ++KI
Sbjct: 380 IQGPPGTGKTVTSATIVYHLSKI 402
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,185,208
Number of Sequences: 62578
Number of extensions: 367891
Number of successful extensions: 1197
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1163
Number of HSP's gapped (non-prelim): 53
length of query: 313
length of database: 14,973,337
effective HSP length: 99
effective length of query: 214
effective length of database: 8,778,115
effective search space: 1878516610
effective search space used: 1878516610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)