Query 021362
Match_columns 313
No_of_seqs 437 out of 1414
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 02:22:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021362.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021362hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 9.4E-49 2E-53 336.6 9.6 199 77-284 2-226 (240)
2 COG1125 OpuBA ABC-type proline 100.0 1.4E-45 3.1E-50 323.4 9.8 207 77-299 1-234 (309)
3 COG3842 PotA ABC-type spermidi 100.0 1.4E-45 3E-50 343.4 10.1 210 75-300 3-236 (352)
4 COG1116 TauB ABC-type nitrate/ 100.0 1.1E-44 2.5E-49 319.1 11.4 185 76-269 2-202 (248)
5 COG3839 MalK ABC-type sugar tr 100.0 1E-44 2.3E-49 335.9 11.6 201 75-284 1-224 (338)
6 COG1135 AbcC ABC-type metal io 100.0 2.3E-44 5.1E-49 323.9 11.7 202 77-283 1-231 (339)
7 COG3638 ABC-type phosphate/pho 100.0 5.7E-43 1.2E-47 304.4 11.4 207 76-291 2-245 (258)
8 COG1120 FepC ABC-type cobalami 100.0 5.5E-43 1.2E-47 313.3 11.4 206 77-291 2-236 (258)
9 COG1127 Ttg2A ABC-type transpo 100.0 7.2E-43 1.6E-47 304.5 11.2 200 75-283 6-235 (263)
10 COG2884 FtsE Predicted ATPase 100.0 8.4E-43 1.8E-47 293.9 10.8 191 77-275 1-218 (223)
11 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.2E-42 2.7E-47 309.6 11.0 203 75-284 2-228 (254)
12 COG1118 CysA ABC-type sulfate/ 100.0 7.3E-43 1.6E-47 313.7 8.9 207 77-299 2-236 (345)
13 COG1124 DppF ABC-type dipeptid 100.0 2.9E-42 6.3E-47 301.7 10.7 205 75-284 1-232 (252)
14 COG1136 SalX ABC-type antimicr 100.0 4.5E-42 9.8E-47 301.8 10.1 188 77-269 1-213 (226)
15 COG4175 ProV ABC-type proline/ 100.0 8.5E-42 1.8E-46 307.4 8.2 204 76-284 3-255 (386)
16 COG1131 CcmA ABC-type multidru 100.0 2.2E-40 4.7E-45 306.0 12.4 201 75-284 2-227 (293)
17 COG1122 CbiO ABC-type cobalt t 100.0 4.3E-40 9.2E-45 293.6 12.9 202 76-284 2-229 (235)
18 COG1117 PstB ABC-type phosphat 100.0 6.8E-40 1.5E-44 281.1 13.3 200 75-284 5-238 (253)
19 COG4555 NatA ABC-type Na+ tran 100.0 1.1E-40 2.4E-45 283.4 8.3 200 77-284 1-223 (245)
20 PRK11432 fbpC ferric transport 100.0 3.6E-40 7.9E-45 311.4 11.6 201 74-283 3-226 (351)
21 TIGR03265 PhnT2 putative 2-ami 100.0 4.6E-40 1E-44 311.1 11.9 200 75-283 2-224 (353)
22 PRK11650 ugpC glycerol-3-phosp 100.0 2.9E-40 6.2E-45 312.8 10.4 200 75-283 1-224 (356)
23 COG1137 YhbG ABC-type (unclass 100.0 3.1E-41 6.6E-46 286.6 2.7 202 75-285 2-230 (243)
24 TIGR02314 ABC_MetN D-methionin 100.0 1.1E-39 2.4E-44 306.9 10.7 202 77-283 1-230 (343)
25 PRK13537 nodulation ABC transp 100.0 1.8E-39 4E-44 301.9 11.4 200 76-284 6-228 (306)
26 PRK09452 potA putrescine/sperm 100.0 2.5E-39 5.5E-44 307.8 11.5 200 75-283 12-234 (375)
27 PRK11607 potG putrescine trans 100.0 5.2E-39 1.1E-43 306.1 12.0 200 75-283 17-239 (377)
28 PRK13536 nodulation factor exp 100.0 4.1E-39 8.9E-44 303.2 10.9 201 75-284 39-262 (340)
29 COG0411 LivG ABC-type branched 100.0 1.6E-39 3.5E-44 284.6 7.3 200 76-284 3-240 (250)
30 TIGR03258 PhnT 2-aminoethylpho 100.0 6.5E-39 1.4E-43 303.9 10.1 199 77-284 5-229 (362)
31 PRK11000 maltose/maltodextrin 100.0 1.1E-38 2.4E-43 303.6 10.8 200 75-283 1-223 (369)
32 PRK11022 dppD dipeptide transp 100.0 3.1E-38 6.6E-43 296.0 11.7 209 75-283 1-243 (326)
33 COG0410 LivF ABC-type branched 100.0 2.7E-38 5.8E-43 274.9 9.9 200 76-284 2-227 (237)
34 PRK10851 sulfate/thiosulfate t 100.0 3E-38 6.5E-43 298.7 10.6 198 77-283 2-226 (353)
35 COG1123 ATPase components of v 100.0 5.8E-38 1.3E-42 304.1 12.7 208 74-284 277-520 (539)
36 COG0444 DppD ABC-type dipeptid 100.0 4.2E-38 9E-43 286.4 10.1 208 77-284 1-244 (316)
37 TIGR01288 nodI ATP-binding ABC 100.0 4.8E-38 1E-42 292.2 10.6 199 77-284 4-225 (303)
38 PRK11308 dppF dipeptide transp 100.0 7E-38 1.5E-42 293.6 11.7 206 75-283 3-244 (327)
39 COG4525 TauB ABC-type taurine 100.0 7.8E-38 1.7E-42 264.9 10.3 198 75-279 1-220 (259)
40 PRK15079 oligopeptide ABC tran 100.0 6.7E-38 1.4E-42 294.1 10.5 206 75-283 6-251 (331)
41 PRK09536 btuD corrinoid ABC tr 100.0 5.9E-38 1.3E-42 300.4 10.1 199 75-282 1-227 (402)
42 COG4598 HisP ABC-type histidin 100.0 2.1E-38 4.6E-43 265.2 6.1 200 75-283 4-241 (256)
43 COG4181 Predicted ABC-type tra 100.0 2E-37 4.4E-42 257.4 11.7 193 77-274 6-226 (228)
44 cd03265 ABC_DrrA DrrA is the A 100.0 8.7E-38 1.9E-42 277.4 9.7 194 78-280 1-218 (220)
45 PRK11153 metN DL-methionine tr 100.0 1.1E-37 2.4E-42 294.3 10.6 202 77-283 1-230 (343)
46 COG4152 ABC-type uncharacteriz 100.0 9.9E-38 2.2E-42 272.4 9.4 199 77-284 2-220 (300)
47 cd03261 ABC_Org_Solvent_Resist 100.0 1.3E-37 2.7E-42 279.0 9.6 196 78-282 1-225 (235)
48 PRK15093 antimicrobial peptide 100.0 2.4E-37 5.1E-42 290.6 11.8 209 75-283 1-248 (330)
49 PRK09473 oppD oligopeptide tra 100.0 2.6E-37 5.6E-42 290.1 12.0 208 73-283 8-251 (330)
50 TIGR03522 GldA_ABC_ATP gliding 100.0 2.2E-37 4.7E-42 287.5 11.1 199 77-284 2-222 (301)
51 PRK13637 cbiO cobalt transport 100.0 2.8E-37 6E-42 284.9 11.3 203 77-283 2-234 (287)
52 COG3840 ThiQ ABC-type thiamine 100.0 1.9E-37 4E-42 259.9 9.2 197 77-284 1-220 (231)
53 PRK13651 cobalt transporter AT 100.0 3.2E-37 6.9E-42 286.6 10.3 202 77-283 2-254 (305)
54 cd03263 ABC_subfamily_A The AB 100.0 3.1E-37 6.8E-42 273.6 9.6 195 78-281 1-219 (220)
55 cd03258 ABC_MetN_methionine_tr 100.0 3.3E-37 7.2E-42 275.9 9.8 201 77-282 1-229 (233)
56 TIGR01186 proV glycine betaine 100.0 2.3E-37 4.9E-42 292.9 8.8 190 85-283 1-219 (363)
57 PRK11264 putative amino-acid A 100.0 6.6E-37 1.4E-41 276.7 11.3 200 75-283 1-233 (250)
58 PRK13634 cbiO cobalt transport 100.0 4.5E-37 9.8E-42 283.9 10.3 202 77-283 2-235 (290)
59 COG1123 ATPase components of v 100.0 5.4E-37 1.2E-41 297.4 11.2 206 76-284 4-245 (539)
60 cd03296 ABC_CysA_sulfate_impor 100.0 5.9E-37 1.3E-41 275.4 10.7 197 77-282 2-225 (239)
61 PRK11629 lolD lipoprotein tran 100.0 5.7E-37 1.2E-41 274.5 10.4 197 76-277 4-228 (233)
62 PRK11831 putative ABC transpor 100.0 8E-37 1.7E-41 279.4 11.5 200 75-283 5-233 (269)
63 cd03259 ABC_Carb_Solutes_like 100.0 4E-37 8.6E-42 271.8 9.2 180 78-266 1-196 (213)
64 TIGR00960 3a0501s02 Type II (G 100.0 4.5E-37 9.7E-42 272.0 9.3 183 77-266 1-203 (216)
65 cd03260 ABC_PstB_phosphate_tra 100.0 4.9E-37 1.1E-41 273.7 9.3 193 78-280 1-226 (227)
66 TIGR03415 ABC_choXWV_ATP choli 100.0 6.3E-37 1.4E-41 291.3 10.6 193 82-283 29-254 (382)
67 PRK10070 glycine betaine trans 100.0 1E-36 2.2E-41 291.8 11.6 202 77-283 4-254 (400)
68 TIGR01188 drrA daunorubicin re 100.0 4.7E-37 1E-41 285.4 8.5 191 85-284 1-214 (302)
69 PRK13641 cbiO cobalt transport 100.0 1.1E-36 2.5E-41 280.9 10.8 202 77-283 2-234 (287)
70 PRK13643 cbiO cobalt transport 100.0 8.7E-37 1.9E-41 281.8 10.0 202 77-283 1-233 (288)
71 cd03218 ABC_YhbG The ABC trans 100.0 1.1E-36 2.3E-41 272.3 9.8 196 78-282 1-221 (232)
72 cd03256 ABC_PhnC_transporter A 100.0 1.8E-36 3.9E-41 272.2 11.2 198 78-284 1-235 (241)
73 cd03219 ABC_Mj1267_LivG_branch 100.0 1.2E-36 2.5E-41 272.7 9.7 196 78-282 1-231 (236)
74 PRK10895 lipopolysaccharide AB 100.0 1.3E-36 2.9E-41 273.4 10.1 200 75-283 1-226 (241)
75 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.7E-36 3.6E-41 272.0 10.6 199 77-284 1-222 (236)
76 PRK13647 cbiO cobalt transport 100.0 1E-36 2.2E-41 279.4 9.5 198 77-282 4-226 (274)
77 cd03301 ABC_MalK_N The N-termi 100.0 1.2E-36 2.6E-41 268.6 9.5 190 78-276 1-213 (213)
78 cd03266 ABC_NatA_sodium_export 100.0 1.2E-36 2.6E-41 269.5 9.2 185 77-266 1-201 (218)
79 PRK14247 phosphate ABC transpo 100.0 3.4E-36 7.3E-41 272.2 12.0 200 75-283 1-234 (250)
80 PRK13650 cbiO cobalt transport 100.0 1.4E-36 3.1E-41 279.1 9.6 203 77-284 4-230 (279)
81 PRK13652 cbiO cobalt transport 100.0 2.3E-36 5E-41 277.5 11.0 201 75-283 1-227 (277)
82 TIGR02315 ABC_phnC phosphonate 100.0 1.9E-36 4.2E-41 272.5 10.2 197 77-282 1-234 (243)
83 PRK13638 cbiO cobalt transport 100.0 1.7E-36 3.7E-41 277.5 9.9 199 77-283 1-225 (271)
84 cd03269 ABC_putative_ATPase Th 100.0 1.5E-36 3.3E-41 267.5 9.2 180 78-266 1-193 (210)
85 cd03224 ABC_TM1139_LivF_branch 100.0 2.2E-36 4.8E-41 268.4 10.0 194 78-282 1-220 (222)
86 PRK09493 glnQ glutamine ABC tr 100.0 2.5E-36 5.5E-41 271.4 10.2 198 77-283 1-225 (240)
87 cd03295 ABC_OpuCA_Osmoprotecti 100.0 2.4E-36 5.3E-41 271.9 9.7 196 78-282 1-224 (242)
88 PRK13636 cbiO cobalt transport 100.0 3.4E-36 7.4E-41 277.2 10.4 199 77-283 5-231 (283)
89 PRK13548 hmuV hemin importer A 100.0 5.5E-36 1.2E-40 272.3 11.6 198 77-283 2-230 (258)
90 PRK13644 cbiO cobalt transport 100.0 2.3E-36 4.9E-41 277.1 9.1 198 77-283 1-224 (274)
91 TIGR03411 urea_trans_UrtD urea 100.0 6E-36 1.3E-40 269.2 11.5 197 77-282 2-230 (242)
92 PRK11248 tauB taurine transpor 100.0 4E-36 8.6E-41 272.8 10.4 192 77-277 1-214 (255)
93 TIGR00972 3a0107s01c2 phosphat 100.0 6E-36 1.3E-40 270.1 11.4 197 77-283 1-232 (247)
94 cd03264 ABC_drug_resistance_li 100.0 3.8E-36 8.1E-41 265.2 9.5 179 78-266 1-194 (211)
95 PRK13646 cbiO cobalt transport 100.0 3.8E-36 8.3E-41 277.2 9.9 203 77-284 2-236 (286)
96 cd03268 ABC_BcrA_bacitracin_re 100.0 4.3E-36 9.3E-41 264.2 9.8 185 78-275 1-207 (208)
97 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 4.6E-36 9.9E-41 265.8 10.0 183 78-265 1-205 (218)
98 PRK14267 phosphate ABC transpo 100.0 7.7E-36 1.7E-40 270.3 11.7 200 75-283 2-237 (253)
99 cd03235 ABC_Metallic_Cations A 100.0 2.8E-36 6.1E-41 266.3 8.4 181 79-266 1-197 (213)
100 PRK14273 phosphate ABC transpo 100.0 1.1E-35 2.5E-40 269.4 12.1 198 76-283 6-238 (254)
101 COG4604 CeuD ABC-type enteroch 100.0 6.7E-37 1.5E-41 259.6 3.8 202 77-287 1-229 (252)
102 TIGR02211 LolD_lipo_ex lipopro 100.0 5.4E-36 1.2E-40 265.9 9.6 185 77-266 1-207 (221)
103 PRK13631 cbiO cobalt transport 100.0 8.8E-36 1.9E-40 278.6 11.4 203 76-283 20-265 (320)
104 PRK14268 phosphate ABC transpo 100.0 1.1E-35 2.4E-40 270.2 11.7 198 75-282 10-241 (258)
105 PRK10908 cell division protein 100.0 5.2E-36 1.1E-40 266.3 9.3 181 77-266 1-202 (222)
106 TIGR03410 urea_trans_UrtE urea 100.0 6.4E-36 1.4E-40 267.0 9.9 195 78-284 1-222 (230)
107 cd03294 ABC_Pro_Gly_Bertaine T 100.0 4.7E-36 1E-40 274.3 9.2 196 79-283 26-250 (269)
108 PRK11124 artP arginine transpo 100.0 8.4E-36 1.8E-40 268.3 10.7 196 77-281 2-228 (242)
109 TIGR02673 FtsE cell division A 100.0 9.6E-36 2.1E-40 263.0 10.8 181 77-266 1-202 (214)
110 PRK13635 cbiO cobalt transport 100.0 6.4E-36 1.4E-40 274.8 9.8 201 76-283 4-229 (279)
111 PRK10584 putative ABC transpor 100.0 1.1E-35 2.4E-40 265.1 10.9 186 76-266 5-212 (228)
112 cd03226 ABC_cobalt_CbiO_domain 100.0 6.9E-36 1.5E-40 262.4 9.3 176 79-266 1-191 (205)
113 PRK10619 histidine/lysine/argi 100.0 1.1E-35 2.4E-40 270.0 11.0 198 77-283 5-241 (257)
114 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.4E-35 2.9E-40 263.3 11.1 184 78-266 1-197 (220)
115 COG4161 ArtP ABC-type arginine 100.0 1E-35 2.2E-40 245.3 9.4 196 77-281 2-228 (242)
116 PRK11614 livF leucine/isoleuci 100.0 7.8E-36 1.7E-40 267.8 9.5 198 75-283 3-226 (237)
117 TIGR02769 nickel_nikE nickel i 100.0 1.6E-35 3.5E-40 270.1 11.8 204 77-283 2-240 (265)
118 PRK14242 phosphate transporter 100.0 2.4E-35 5.2E-40 267.0 12.8 201 76-283 5-237 (253)
119 PRK11701 phnK phosphonate C-P 100.0 2E-35 4.3E-40 268.5 11.7 201 76-283 5-241 (258)
120 PRK15112 antimicrobial peptide 100.0 1.4E-35 3E-40 270.9 10.5 205 76-283 3-239 (267)
121 cd03257 ABC_NikE_OppD_transpor 100.0 1.8E-35 4E-40 263.4 10.8 187 77-266 1-211 (228)
122 PRK13639 cbiO cobalt transport 100.0 1.1E-35 2.4E-40 272.7 9.5 198 77-283 1-226 (275)
123 PRK14250 phosphate ABC transpo 100.0 2.2E-35 4.8E-40 265.7 11.0 195 75-283 1-221 (241)
124 PRK13633 cobalt transporter AT 100.0 1.2E-35 2.6E-40 273.2 9.4 204 76-283 3-233 (280)
125 PRK14241 phosphate transporter 100.0 3.4E-35 7.5E-40 266.9 12.0 198 77-283 4-242 (258)
126 PRK10261 glutathione transport 100.0 2.1E-35 4.5E-40 298.7 11.6 205 76-283 312-553 (623)
127 PRK10744 pstB phosphate transp 100.0 3.9E-35 8.4E-40 266.9 12.2 202 75-283 11-244 (260)
128 PRK14235 phosphate transporter 100.0 4.4E-35 9.5E-40 267.6 12.4 199 75-283 17-251 (267)
129 PRK10261 glutathione transport 100.0 2.1E-35 4.6E-40 298.7 11.3 205 75-282 10-257 (623)
130 PRK11231 fecE iron-dicitrate t 100.0 2.2E-35 4.8E-40 267.7 10.2 198 77-283 2-227 (255)
131 PRK11247 ssuB aliphatic sulfon 100.0 1.9E-35 4.1E-40 268.5 9.7 188 76-278 11-218 (257)
132 PRK13649 cbiO cobalt transport 100.0 2.4E-35 5.1E-40 271.1 10.4 202 77-283 2-234 (280)
133 PRK14274 phosphate ABC transpo 100.0 3.9E-35 8.4E-40 266.7 11.7 202 75-283 10-243 (259)
134 TIGR03005 ectoine_ehuA ectoine 100.0 1.6E-35 3.4E-40 268.2 9.1 197 78-283 1-236 (252)
135 PRK13632 cbiO cobalt transport 100.0 2.3E-35 5.1E-40 270.0 10.3 199 76-283 6-231 (271)
136 PRK14270 phosphate ABC transpo 100.0 4.5E-35 9.8E-40 265.1 11.9 198 76-283 3-235 (251)
137 PRK10418 nikD nickel transport 100.0 6.2E-35 1.3E-39 264.7 12.5 197 77-283 4-230 (254)
138 cd03225 ABC_cobalt_CbiO_domain 100.0 2.7E-35 5.7E-40 259.6 9.8 179 79-266 1-199 (211)
139 COG4559 ABC-type hemin transpo 100.0 1.6E-35 3.5E-40 253.8 8.1 200 77-285 1-232 (259)
140 PRK11144 modC molybdate transp 100.0 2.6E-35 5.7E-40 279.0 10.4 190 77-284 1-219 (352)
141 PRK11300 livG leucine/isoleuci 100.0 3.6E-35 7.9E-40 266.1 10.8 197 77-282 5-242 (255)
142 PRK14262 phosphate ABC transpo 100.0 6.5E-35 1.4E-39 263.8 12.1 199 75-283 1-234 (250)
143 PRK13549 xylose transporter AT 100.0 2.1E-35 4.6E-40 292.3 9.7 198 76-282 4-231 (506)
144 PRK10575 iron-hydroxamate tran 100.0 3.7E-35 8.1E-40 267.8 10.4 199 76-283 10-237 (265)
145 PRK14269 phosphate ABC transpo 100.0 6.5E-35 1.4E-39 263.3 11.8 200 77-283 2-230 (246)
146 PRK14239 phosphate transporter 100.0 8.3E-35 1.8E-39 263.3 12.5 198 76-283 4-236 (252)
147 PRK13640 cbiO cobalt transport 100.0 2.7E-35 5.9E-40 271.0 9.4 201 77-283 5-232 (282)
148 PRK10762 D-ribose transporter 100.0 2E-35 4.3E-40 292.2 9.0 199 76-283 3-230 (501)
149 cd03262 ABC_HisP_GlnQ_permease 100.0 2.8E-35 6.1E-40 259.7 9.0 180 78-266 1-200 (213)
150 cd03292 ABC_FtsE_transporter F 100.0 3.4E-35 7.3E-40 259.4 9.3 180 78-266 1-201 (214)
151 PRK10771 thiQ thiamine transpo 100.0 5.4E-35 1.2E-39 261.6 10.4 197 77-284 1-220 (232)
152 PRK14254 phosphate ABC transpo 100.0 1.1E-34 2.5E-39 267.3 12.8 201 75-283 37-269 (285)
153 PRK10253 iron-enterobactin tra 100.0 5.1E-35 1.1E-39 266.9 10.4 199 76-283 6-233 (265)
154 PRK13648 cbiO cobalt transport 100.0 3.8E-35 8.2E-40 268.3 9.2 202 76-283 6-231 (269)
155 PRK14240 phosphate transporter 100.0 1.2E-34 2.6E-39 262.0 12.3 202 75-283 1-234 (250)
156 PRK14256 phosphate ABC transpo 100.0 1.4E-34 3E-39 262.0 12.7 201 77-283 4-236 (252)
157 PRK09984 phosphonate/organopho 100.0 6.6E-35 1.4E-39 265.6 10.6 197 76-281 3-240 (262)
158 PRK13645 cbiO cobalt transport 100.0 4.8E-35 1E-39 270.3 9.7 203 77-283 6-240 (289)
159 PRK10419 nikE nickel transport 100.0 8.3E-35 1.8E-39 265.9 11.1 205 75-282 1-240 (268)
160 PRK13642 cbiO cobalt transport 100.0 5.4E-35 1.2E-39 268.4 9.9 201 77-283 4-229 (277)
161 PRK14237 phosphate transporter 100.0 1.3E-34 2.9E-39 264.5 12.4 201 76-283 19-251 (267)
162 TIGR02323 CP_lyasePhnK phospho 100.0 9.1E-35 2E-39 263.3 11.1 201 76-283 2-238 (253)
163 TIGR03873 F420-0_ABC_ATP propo 100.0 6.7E-35 1.5E-39 264.7 10.3 197 78-283 2-226 (256)
164 PRK14245 phosphate ABC transpo 100.0 1.4E-34 3.1E-39 261.6 12.3 198 76-283 2-234 (250)
165 PRK14253 phosphate ABC transpo 100.0 1.4E-34 3E-39 261.5 12.1 198 75-282 1-232 (249)
166 PRK15439 autoinducer 2 ABC tra 100.0 7.8E-35 1.7E-39 288.5 10.9 196 76-284 10-230 (510)
167 cd03298 ABC_ThiQ_thiamine_tran 100.0 6.9E-35 1.5E-39 257.1 9.4 178 78-266 1-194 (211)
168 TIGR02142 modC_ABC molybdenum 100.0 8.1E-35 1.8E-39 275.9 10.3 189 82-283 4-221 (354)
169 COG4172 ABC-type uncharacteriz 100.0 2.6E-34 5.7E-39 266.1 12.8 206 75-284 274-517 (534)
170 TIGR03740 galliderm_ABC gallid 100.0 1.1E-34 2.4E-39 257.9 10.1 190 78-280 1-210 (223)
171 PRK09700 D-allose transporter 100.0 7.2E-35 1.6E-39 288.8 9.7 199 76-283 4-234 (510)
172 TIGR03608 L_ocin_972_ABC putat 100.0 1.1E-34 2.3E-39 254.8 9.6 176 80-264 1-197 (206)
173 PRK14272 phosphate ABC transpo 100.0 2.5E-34 5.4E-39 260.2 12.2 198 77-283 4-236 (252)
174 TIGR01978 sufC FeS assembly AT 100.0 1.6E-34 3.6E-39 259.8 10.6 195 78-281 1-232 (243)
175 PRK14248 phosphate ABC transpo 100.0 4.1E-34 8.8E-39 261.3 13.0 201 76-283 20-252 (268)
176 PRK13538 cytochrome c biogenes 100.0 2.6E-34 5.6E-39 252.4 10.9 178 77-266 1-194 (204)
177 PRK14251 phosphate ABC transpo 100.0 4.1E-34 9E-39 258.7 12.4 199 77-282 4-234 (251)
178 cd03300 ABC_PotA_N PotA is an 100.0 1.9E-34 4.2E-39 258.0 10.2 197 78-283 1-220 (232)
179 PRK14259 phosphate ABC transpo 100.0 3.3E-34 7.1E-39 262.1 11.7 200 76-283 12-253 (269)
180 PRK15134 microcin C ABC transp 100.0 2.2E-34 4.8E-39 286.5 11.4 204 76-282 4-245 (529)
181 PRK14275 phosphate ABC transpo 100.0 3.4E-34 7.4E-39 264.2 11.8 203 74-283 36-270 (286)
182 PRK15056 manganese/iron transp 100.0 2.2E-34 4.7E-39 263.7 10.4 199 77-282 6-229 (272)
183 TIGR01277 thiQ thiamine ABC tr 100.0 2.6E-34 5.6E-39 253.9 10.5 189 78-277 1-212 (213)
184 COG4608 AppF ABC-type oligopep 100.0 3.1E-34 6.8E-39 256.0 10.8 176 75-284 2-200 (268)
185 COG1129 MglA ABC-type sugar tr 100.0 1.4E-34 3E-39 278.9 9.0 194 75-277 6-228 (500)
186 PRK13547 hmuV hemin importer A 100.0 1.5E-34 3.3E-39 264.7 8.8 198 77-283 1-244 (272)
187 PRK14271 phosphate ABC transpo 100.0 4E-34 8.7E-39 262.5 11.3 198 76-283 20-251 (276)
188 PRK14261 phosphate ABC transpo 100.0 5.4E-34 1.2E-38 258.3 12.1 200 76-283 5-237 (253)
189 PRK14249 phosphate ABC transpo 100.0 7.1E-34 1.5E-38 257.2 12.6 198 76-283 3-235 (251)
190 PRK10247 putative ABC transpor 100.0 5.8E-34 1.3E-38 253.9 11.7 178 76-265 6-202 (225)
191 TIGR00968 3a0106s01 sulfate AB 100.0 2.8E-34 6.1E-39 257.8 9.6 197 78-283 1-220 (237)
192 cd03299 ABC_ModC_like Archeal 100.0 3.7E-34 8E-39 256.8 10.3 196 78-283 1-219 (235)
193 PRK14236 phosphate transporter 100.0 5.7E-34 1.2E-38 261.0 11.7 202 75-283 23-256 (272)
194 TIGR03269 met_CoM_red_A2 methy 100.0 4.1E-34 8.9E-39 284.0 11.5 199 78-284 1-259 (520)
195 PRK14260 phosphate ABC transpo 100.0 7.7E-34 1.7E-38 258.2 12.3 199 75-283 5-243 (259)
196 PRK14243 phosphate transporter 100.0 8.5E-34 1.8E-38 258.7 12.3 200 76-283 9-248 (264)
197 PRK14238 phosphate transporter 100.0 8.5E-34 1.9E-38 259.7 12.3 201 76-283 23-255 (271)
198 PRK14255 phosphate ABC transpo 100.0 9.4E-34 2E-38 256.5 12.4 200 76-283 4-236 (252)
199 TIGR02324 CP_lyasePhnL phospho 100.0 7.5E-34 1.6E-38 252.7 11.5 185 77-266 1-214 (224)
200 PRK15134 microcin C ABC transp 100.0 3.7E-34 8.1E-39 284.9 10.5 204 76-283 274-515 (529)
201 TIGR03269 met_CoM_red_A2 methy 100.0 5.1E-34 1.1E-38 283.4 11.2 203 75-283 277-517 (520)
202 PRK09544 znuC high-affinity zi 100.0 8.2E-34 1.8E-38 257.0 11.2 190 76-282 3-208 (251)
203 PRK13539 cytochrome c biogenes 100.0 7.1E-34 1.5E-38 250.2 10.4 177 77-266 2-192 (207)
204 cd03297 ABC_ModC_molybdenum_tr 100.0 5E-34 1.1E-38 252.2 9.2 184 78-276 2-214 (214)
205 PRK13543 cytochrome c biogenes 100.0 2.5E-33 5.5E-38 247.9 13.0 179 76-266 10-202 (214)
206 PRK14246 phosphate ABC transpo 100.0 1.5E-33 3.3E-38 256.1 11.6 200 75-283 8-241 (257)
207 PRK11288 araG L-arabinose tran 100.0 6.4E-34 1.4E-38 281.5 9.5 193 76-277 3-223 (501)
208 cd03267 ABC_NatA_like Similar 100.0 8.2E-34 1.8E-38 254.7 8.8 167 96-266 36-219 (236)
209 PRK14265 phosphate ABC transpo 100.0 2.9E-33 6.3E-38 256.6 12.2 201 75-283 18-258 (274)
210 TIGR01166 cbiO cobalt transpor 100.0 7E-34 1.5E-38 246.8 7.6 164 96-264 7-190 (190)
211 TIGR01257 rim_protein retinal- 100.0 1.2E-33 2.5E-38 308.9 11.0 202 76-284 1936-2160(2272)
212 PRK14266 phosphate ABC transpo 100.0 2.9E-33 6.3E-38 253.0 11.7 202 75-283 1-234 (250)
213 PRK14252 phosphate ABC transpo 100.0 4.5E-33 9.8E-38 254.0 12.9 198 76-283 15-249 (265)
214 TIGR02633 xylG D-xylose ABC tr 100.0 9.1E-34 2E-38 280.3 9.0 196 77-281 1-228 (500)
215 PRK13540 cytochrome c biogenes 100.0 3.2E-33 7E-38 244.7 11.3 175 77-265 1-191 (200)
216 PRK14258 phosphate ABC transpo 100.0 3.3E-33 7.1E-38 254.4 11.6 198 76-283 6-245 (261)
217 PRK13549 xylose transporter AT 100.0 1E-33 2.2E-38 280.3 8.9 202 76-282 258-493 (506)
218 cd03252 ABCC_Hemolysin The ABC 100.0 4.4E-34 9.5E-39 256.3 5.5 193 78-284 1-226 (237)
219 PRK14244 phosphate ABC transpo 100.0 2.6E-33 5.5E-38 253.6 10.5 199 78-283 6-237 (251)
220 COG3845 ABC-type uncharacteriz 100.0 2.2E-33 4.8E-38 266.2 10.4 190 76-274 3-220 (501)
221 TIGR01189 ccmA heme ABC export 100.0 2.4E-33 5.1E-38 245.1 9.6 175 78-265 1-191 (198)
222 PRK11819 putative ABC transpor 100.0 7E-33 1.5E-37 277.2 14.3 195 75-281 4-248 (556)
223 PRK10982 galactose/methyl gala 100.0 1E-33 2.2E-38 279.3 8.2 194 80-282 1-222 (491)
224 PRK10938 putative molybdenum t 100.0 2.1E-33 4.5E-38 277.1 10.2 193 75-282 1-223 (490)
225 PRK14257 phosphate ABC transpo 100.0 4.6E-33 1E-37 261.1 12.0 203 76-283 79-313 (329)
226 TIGR02770 nickel_nikD nickel i 100.0 2.6E-33 5.6E-38 250.5 9.4 185 96-283 1-215 (230)
227 TIGR02982 heterocyst_DevA ABC 100.0 1.9E-33 4.2E-38 249.6 8.5 183 77-264 1-205 (220)
228 cd03231 ABC_CcmA_heme_exporter 100.0 3.6E-33 7.8E-38 244.6 10.1 174 78-266 1-190 (201)
229 COG2274 SunT ABC-type bacterio 100.0 3E-33 6.5E-38 283.1 10.8 194 77-284 471-697 (709)
230 PRK14263 phosphate ABC transpo 100.0 9.7E-33 2.1E-37 251.4 12.4 197 76-283 7-245 (261)
231 PRK14264 phosphate ABC transpo 100.0 1.1E-32 2.5E-37 256.3 12.7 201 76-283 44-289 (305)
232 cd03251 ABCC_MsbA MsbA is an e 100.0 1.6E-33 3.4E-38 252.2 6.6 197 78-284 1-226 (234)
233 PRK15064 ABC transporter ATP-b 100.0 1.1E-32 2.4E-37 274.3 12.9 194 76-284 318-526 (530)
234 TIGR01257 rim_protein retinal- 100.0 6.2E-33 1.3E-37 303.3 11.8 199 76-283 927-1149(2272)
235 PRK15064 ABC transporter ATP-b 100.0 1.4E-32 3E-37 273.6 13.3 194 77-282 1-241 (530)
236 CHL00131 ycf16 sulfate ABC tra 100.0 1.1E-32 2.3E-37 249.5 10.9 195 76-279 6-237 (252)
237 COG1134 TagH ABC-type polysacc 100.0 1.4E-32 3.1E-37 241.2 11.2 202 76-286 2-239 (249)
238 COG4172 ABC-type uncharacteriz 100.0 2.3E-32 5E-37 253.2 13.0 210 75-284 4-248 (534)
239 TIGR01184 ntrCD nitrate transp 100.0 5.5E-33 1.2E-37 248.4 8.2 180 97-281 1-202 (230)
240 cd03245 ABCC_bacteriocin_expor 100.0 6.3E-33 1.4E-37 246.0 8.3 173 78-264 3-202 (220)
241 cd03254 ABCC_Glucan_exporter_l 100.0 9.1E-33 2E-37 246.4 9.1 190 78-283 3-226 (229)
242 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 4E-33 8.6E-38 248.4 6.7 176 78-266 23-207 (224)
243 COG4148 ModC ABC-type molybdat 100.0 1.2E-32 2.7E-37 244.6 9.7 186 82-284 5-219 (352)
244 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 4.4E-32 9.5E-37 271.3 14.3 194 77-282 4-247 (552)
245 PRK13541 cytochrome c biogenes 100.0 1.9E-32 4.2E-37 238.9 10.0 175 77-266 1-188 (195)
246 KOG0058 Peptide exporter, ABC 100.0 1.2E-32 2.5E-37 271.4 9.4 195 77-284 465-692 (716)
247 cd03234 ABCG_White The White s 100.0 2.6E-32 5.7E-37 243.2 10.5 198 77-276 3-226 (226)
248 PRK09700 D-allose transporter 100.0 1.1E-32 2.4E-37 273.2 8.7 193 76-278 264-493 (510)
249 COG4674 Uncharacterized ABC-ty 100.0 1.5E-32 3.2E-37 232.8 8.1 199 76-283 4-235 (249)
250 cd03289 ABCC_CFTR2 The CFTR su 100.0 2.3E-32 5E-37 250.4 9.8 189 78-284 3-226 (275)
251 cd03369 ABCC_NFT1 Domain 2 of 100.0 5E-32 1.1E-36 238.3 11.5 181 77-277 6-206 (207)
252 cd03244 ABCC_MRP_domain2 Domai 100.0 2.1E-32 4.5E-37 242.9 9.1 185 78-277 3-220 (221)
253 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.9E-32 4.1E-37 280.4 10.2 193 77-284 451-674 (686)
254 PRK13546 teichoic acids export 100.0 5.7E-32 1.2E-36 246.6 11.8 198 77-284 4-233 (264)
255 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 7E-33 1.5E-37 248.7 5.7 193 78-283 1-226 (238)
256 TIGR02633 xylG D-xylose ABC tr 100.0 1.3E-32 2.8E-37 272.1 7.7 196 77-280 257-489 (500)
257 PRK03695 vitamin B12-transport 100.0 1.7E-32 3.6E-37 248.0 7.6 189 79-282 2-221 (248)
258 PRK09580 sufC cysteine desulfu 100.0 7.8E-32 1.7E-36 243.2 12.0 196 77-281 1-233 (248)
259 PRK11176 lipid transporter ATP 100.0 3.3E-32 7.2E-37 273.7 10.6 195 77-284 341-568 (582)
260 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 2.8E-32 6E-37 280.2 10.2 194 77-284 477-701 (710)
261 cd03247 ABCC_cytochrome_bd The 100.0 2.4E-32 5.1E-37 235.0 7.8 149 78-266 1-162 (178)
262 PRK13545 tagH teichoic acids e 100.0 4.7E-32 1E-36 263.9 10.3 198 76-284 20-233 (549)
263 cd03213 ABCG_EPDR ABCG transpo 100.0 4.3E-32 9.4E-37 236.6 9.0 158 77-266 3-177 (194)
264 cd03248 ABCC_TAP TAP, the Tran 100.0 1.9E-32 4.1E-37 244.0 6.8 184 76-266 10-214 (226)
265 PRK11174 cysteine/glutathione 100.0 5.7E-32 1.2E-36 272.4 10.5 191 77-284 349-573 (588)
266 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.4E-31 3.1E-36 267.5 13.0 196 76-284 321-532 (552)
267 cd03253 ABCC_ATM1_transporter 100.0 2.1E-32 4.6E-37 245.1 6.2 190 78-283 1-224 (236)
268 COG4619 ABC-type uncharacteriz 100.0 1.3E-32 2.8E-37 228.1 4.3 178 77-266 3-199 (223)
269 cd03233 ABC_PDR_domain1 The pl 100.0 1.1E-31 2.3E-36 235.6 10.3 167 77-266 3-185 (202)
270 COG4167 SapF ABC-type antimicr 100.0 6.7E-32 1.4E-36 226.8 8.4 207 75-284 2-240 (267)
271 PRK11819 putative ABC transpor 100.0 1.8E-31 3.9E-36 267.0 13.1 196 76-284 323-534 (556)
272 cd03232 ABC_PDR_domain2 The pl 100.0 8.6E-32 1.9E-36 234.3 9.4 155 77-263 3-170 (192)
273 COG4988 CydD ABC-type transpor 100.0 1.1E-31 2.4E-36 259.7 11.1 193 77-284 320-544 (559)
274 cd03230 ABC_DR_subfamily_A Thi 100.0 8.5E-32 1.8E-36 230.5 9.1 146 78-266 1-160 (173)
275 KOG0055 Multidrug/pheromone ex 100.0 5.4E-32 1.2E-36 279.9 9.0 195 77-284 350-577 (1228)
276 PRK10762 D-ribose transporter 100.0 5.8E-32 1.3E-36 267.5 8.4 194 76-282 256-483 (501)
277 cd03215 ABC_Carb_Monos_II This 100.0 1.4E-31 3.1E-36 231.0 9.7 149 77-266 4-169 (182)
278 cd03223 ABCD_peroxisomal_ALDP 100.0 1.7E-31 3.8E-36 227.2 9.9 146 78-264 1-151 (166)
279 PRK10790 putative multidrug tr 100.0 1.2E-31 2.7E-36 270.2 10.5 191 77-283 340-563 (592)
280 cd03229 ABC_Class3 This class 100.0 1E-31 2.2E-36 231.1 8.4 148 78-266 1-166 (178)
281 TIGR00958 3a01208 Conjugate Tr 100.0 1.3E-31 2.8E-36 275.0 10.5 195 77-284 478-703 (711)
282 PLN03211 ABC transporter G-25; 100.0 1.7E-31 3.6E-36 270.9 10.7 195 79-283 70-296 (659)
283 TIGR01193 bacteriocin_ABC ABC- 100.0 1.4E-31 3E-36 274.9 10.2 193 77-283 473-697 (708)
284 cd03246 ABCC_Protease_Secretio 100.0 1.3E-31 2.8E-36 229.4 8.1 145 78-265 1-160 (173)
285 PRK11288 araG L-arabinose tran 100.0 7.3E-32 1.6E-36 266.8 7.5 198 76-285 256-487 (501)
286 COG4586 ABC-type uncharacteriz 100.0 1.5E-31 3.3E-36 237.0 8.5 206 76-285 2-248 (325)
287 TIGR03375 type_I_sec_LssB type 100.0 1.7E-31 3.6E-36 273.8 10.1 194 77-284 463-689 (694)
288 cd03288 ABCC_SUR2 The SUR doma 100.0 3.4E-31 7.3E-36 240.7 11.0 194 75-283 17-243 (257)
289 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.4E-31 3.1E-36 234.3 8.1 166 78-282 1-192 (200)
290 PRK10938 putative molybdenum t 100.0 1E-31 2.2E-36 265.1 7.9 185 75-266 258-467 (490)
291 PRK11160 cysteine/glutathione 100.0 1.8E-31 3.9E-36 268.0 9.6 194 77-284 338-563 (574)
292 PRK10636 putative ABC transpor 100.0 4.4E-31 9.5E-36 267.7 11.9 192 76-283 311-517 (638)
293 cd03250 ABCC_MRP_domain1 Domai 100.0 5.9E-31 1.3E-35 230.9 10.5 171 78-266 1-193 (204)
294 PRK11147 ABC transporter ATPas 100.0 1.2E-30 2.7E-35 264.6 14.1 196 75-282 1-242 (635)
295 PRK13657 cyclic beta-1,2-gluca 100.0 4.6E-31 9.9E-36 265.8 10.5 192 77-283 334-558 (588)
296 TIGR03771 anch_rpt_ABC anchore 100.0 4.5E-31 9.7E-36 235.0 9.2 179 102-283 1-201 (223)
297 KOG0057 Mitochondrial Fe/S clu 100.0 7.6E-31 1.6E-35 251.1 11.4 191 77-283 351-574 (591)
298 cd03228 ABCC_MRP_Like The MRP 100.0 5E-31 1.1E-35 225.4 8.9 146 78-266 1-160 (171)
299 PRK15439 autoinducer 2 ABC tra 100.0 3.2E-31 6.9E-36 262.8 8.8 195 76-283 267-492 (510)
300 TIGR02203 MsbA_lipidA lipid A 100.0 6.6E-31 1.4E-35 263.7 11.1 194 77-283 330-556 (571)
301 PRK10535 macrolide transporter 100.0 6.5E-31 1.4E-35 267.0 11.0 201 77-282 4-231 (648)
302 TIGR02868 CydC thiol reductant 100.0 6E-31 1.3E-35 261.8 10.4 170 77-261 334-529 (529)
303 COG1132 MdlB ABC-type multidru 100.0 3E-31 6.5E-36 266.1 7.4 192 77-284 328-553 (567)
304 cd03214 ABC_Iron-Siderophores_ 100.0 2.2E-31 4.8E-36 229.4 5.4 153 79-266 1-163 (180)
305 COG4987 CydC ABC-type transpor 100.0 4.7E-31 1E-35 252.3 7.9 193 77-283 336-561 (573)
306 COG1119 ModF ABC-type molybden 100.0 3.4E-31 7.4E-36 232.3 6.3 196 75-277 29-256 (257)
307 PRK10982 galactose/methyl gala 100.0 6E-31 1.3E-35 259.7 8.8 195 76-280 249-477 (491)
308 COG1101 PhnK ABC-type uncharac 100.0 5E-31 1.1E-35 226.6 6.5 195 77-274 1-229 (263)
309 PRK10636 putative ABC transpor 100.0 3.3E-30 7.2E-35 261.3 13.5 193 77-282 1-235 (638)
310 PRK13409 putative ATPase RIL; 100.0 1.8E-30 3.8E-35 260.5 11.2 182 76-277 339-536 (590)
311 TIGR02204 MsbA_rel ABC transpo 100.0 1.2E-30 2.5E-35 262.2 9.8 195 77-284 337-564 (576)
312 PRK11147 ABC transporter ATPas 100.0 4.4E-30 9.5E-35 260.6 12.8 193 76-281 318-526 (635)
313 COG4107 PhnK ABC-type phosphon 100.0 3.3E-30 7.2E-35 215.0 9.8 202 76-284 5-242 (258)
314 cd03290 ABCC_SUR1_N The SUR do 100.0 3.7E-30 8E-35 228.1 10.5 171 79-265 2-206 (218)
315 cd03216 ABC_Carb_Monos_I This 100.0 1.6E-30 3.5E-35 220.7 7.7 131 78-266 1-147 (163)
316 TIGR01842 type_I_sec_PrtD type 100.0 1E-30 2.3E-35 261.0 6.9 193 77-283 316-542 (544)
317 TIGR01846 type_I_sec_HlyB type 100.0 2.2E-30 4.7E-35 265.5 9.4 194 77-284 455-681 (694)
318 TIGR01192 chvA glucan exporter 100.0 3.6E-30 7.8E-35 259.1 10.8 193 77-284 334-559 (585)
319 PRK10789 putative multidrug tr 100.0 4.1E-30 8.8E-35 258.0 10.0 193 77-283 313-538 (569)
320 PLN03073 ABC transporter F fam 100.0 2.7E-29 5.8E-34 256.5 14.7 190 76-281 507-712 (718)
321 cd03291 ABCC_CFTR1 The CFTR su 100.0 1.9E-29 4E-34 232.0 12.1 185 75-283 37-247 (282)
322 PRK15177 Vi polysaccharide exp 100.0 6.9E-30 1.5E-34 225.9 8.7 174 96-282 2-191 (213)
323 PLN03130 ABC transporter C fam 100.0 6.3E-30 1.4E-34 280.0 10.2 193 77-284 1237-1462(1622)
324 PLN03232 ABC transporter C fam 100.0 5.3E-30 1.1E-34 279.9 9.5 193 77-284 1234-1459(1495)
325 cd03237 ABC_RNaseL_inhibitor_d 100.0 9.9E-30 2.2E-34 229.6 9.6 157 97-266 15-181 (246)
326 COG4136 ABC-type uncharacteriz 100.0 3.8E-30 8.2E-35 209.9 6.0 182 77-265 2-199 (213)
327 TIGR01187 potA spermidine/putr 100.0 4.3E-30 9.4E-35 240.9 7.0 167 112-283 1-190 (325)
328 TIGR02857 CydD thiol reductant 100.0 1.6E-29 3.4E-34 251.7 10.2 176 77-266 320-522 (529)
329 COG0396 sufC Cysteine desulfur 100.0 6.1E-29 1.3E-33 216.0 12.3 202 75-284 1-234 (251)
330 TIGR00956 3a01205 Pleiotropic 100.0 7.6E-30 1.7E-34 276.6 8.1 211 76-288 758-1001(1394)
331 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 3E-29 6.6E-34 208.6 9.5 128 78-266 1-132 (144)
332 PRK10522 multidrug transporter 100.0 2.2E-29 4.8E-34 251.6 9.6 180 77-275 322-530 (547)
333 PTZ00243 ABC transporter; Prov 100.0 3.5E-29 7.6E-34 273.7 11.2 192 77-283 1308-1533(1560)
334 TIGR00957 MRP_assoc_pro multi 100.0 4.5E-29 9.7E-34 273.0 11.1 193 77-284 1284-1509(1522)
335 PTZ00265 multidrug resistance 100.0 4E-29 8.6E-34 271.5 10.4 194 77-283 1165-1452(1466)
336 KOG0055 Multidrug/pheromone ex 100.0 4.2E-29 9.2E-34 258.5 9.8 195 77-284 987-1214(1228)
337 cd03236 ABC_RNaseL_inhibitor_d 100.0 8.7E-29 1.9E-33 224.5 8.9 181 81-276 4-220 (255)
338 TIGR00955 3a01204 The Eye Pigm 100.0 1.2E-28 2.5E-33 249.3 10.7 185 94-283 38-256 (617)
339 PTZ00265 multidrug resistance 100.0 9.3E-29 2E-33 268.7 9.7 186 77-269 382-650 (1466)
340 TIGR00954 3a01203 Peroxysomal 100.0 1.8E-28 4E-33 249.5 11.3 178 76-266 450-644 (659)
341 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.3E-28 2.9E-33 246.3 9.3 175 77-266 337-536 (555)
342 COG4133 CcmA ABC-type transpor 100.0 1.4E-28 3E-33 207.6 7.7 176 77-264 2-193 (209)
343 COG0488 Uup ATPase components 100.0 6.5E-28 1.4E-32 237.4 13.4 197 75-283 1-240 (530)
344 KOG0056 Heavy metal exporter H 99.9 1.5E-28 3.3E-33 232.1 7.9 193 77-284 537-762 (790)
345 KOG0059 Lipid exporter ABCA1 a 99.9 3.7E-28 8E-33 253.8 11.6 200 76-283 563-787 (885)
346 TIGR01271 CFTR_protein cystic 99.9 3.7E-28 8.1E-33 265.2 12.0 191 77-283 1217-1440(1490)
347 cd03222 ABC_RNaseL_inhibitor T 99.9 4.9E-28 1.1E-32 207.8 9.6 126 81-266 4-137 (177)
348 COG4618 ArpD ABC-type protease 99.9 1.8E-27 3.9E-32 226.2 13.1 195 77-285 334-562 (580)
349 COG4778 PhnL ABC-type phosphon 99.9 1.9E-27 4E-32 197.8 8.1 184 77-265 4-216 (235)
350 PLN03140 ABC transporter G fam 99.9 1.4E-27 3E-32 258.9 8.0 208 77-288 867-1118(1470)
351 PLN03130 ABC transporter C fam 99.9 4.7E-27 1E-31 257.5 12.3 188 77-283 614-828 (1622)
352 PLN03140 ABC transporter G fam 99.9 7.1E-27 1.5E-31 253.3 13.3 185 94-283 178-427 (1470)
353 TIGR00956 3a01205 Pleiotropic 99.9 5.4E-27 1.2E-31 254.5 12.0 188 94-283 74-300 (1394)
354 TIGR00957 MRP_assoc_pro multi 99.9 5.4E-27 1.2E-31 256.7 11.2 187 77-283 636-850 (1522)
355 PRK13409 putative ATPase RIL; 99.9 4.2E-27 9.1E-32 236.1 9.2 169 81-266 77-276 (590)
356 PLN03073 ABC transporter F fam 99.9 1.6E-27 3.5E-32 243.4 5.9 200 74-281 174-429 (718)
357 PLN03232 ABC transporter C fam 99.9 5.9E-27 1.3E-31 256.1 10.6 189 77-283 614-828 (1495)
358 cd03238 ABC_UvrA The excision 99.9 1.1E-26 2.4E-31 199.2 8.9 131 95-266 9-154 (176)
359 cd00267 ABC_ATPase ABC (ATP-bi 99.9 2.4E-26 5.2E-31 193.5 9.0 129 80-266 2-145 (157)
360 COG0488 Uup ATPase components 99.9 4.3E-26 9.3E-31 224.5 11.4 175 75-266 319-501 (530)
361 TIGR01271 CFTR_protein cystic 99.9 2E-26 4.3E-31 251.7 9.0 173 96-283 441-636 (1490)
362 KOG0061 Transporter, ABC super 99.9 3.2E-25 6.9E-30 223.2 13.8 205 77-283 25-260 (613)
363 PF00005 ABC_tran: ABC transpo 99.9 2.1E-26 4.5E-31 189.0 1.5 122 97-236 1-136 (137)
364 PTZ00243 ABC transporter; Prov 99.9 6.3E-25 1.4E-29 240.4 10.5 170 96-283 675-870 (1560)
365 COG5265 ATM1 ABC-type transpor 99.9 2.7E-25 5.8E-30 207.3 4.8 193 77-284 262-487 (497)
366 KOG0054 Multidrug resistance-a 99.9 1.9E-24 4.1E-29 228.5 11.4 193 77-284 1138-1363(1381)
367 cd03270 ABC_UvrA_I The excisio 99.9 1.9E-24 4.1E-29 192.8 9.3 168 96-266 10-204 (226)
368 KOG0054 Multidrug resistance-a 99.9 4.1E-24 9E-29 225.9 11.7 189 76-283 517-731 (1381)
369 COG4138 BtuD ABC-type cobalami 99.9 1.8E-23 3.8E-28 174.9 6.5 195 76-289 2-227 (248)
370 cd03278 ABC_SMC_barmotin Barmo 99.9 6E-23 1.3E-27 179.4 9.8 143 98-265 14-180 (197)
371 COG4615 PvdE ABC-type sideroph 99.9 4.8E-22 1E-26 184.3 9.6 180 76-275 321-529 (546)
372 KOG0927 Predicted transporter 99.9 1.7E-21 3.6E-26 186.7 12.0 179 74-266 386-571 (614)
373 KOG2702 Predicted panthothenat 99.9 2.6E-21 5.6E-26 167.8 10.5 203 104-312 116-322 (323)
374 COG4170 SapD ABC-type antimicr 99.9 1.4E-21 3E-26 168.0 8.2 208 75-283 1-248 (330)
375 cd03273 ABC_SMC2_euk Eukaryoti 99.8 4E-21 8.8E-26 173.9 8.2 176 78-266 6-234 (251)
376 cd03271 ABC_UvrA_II The excisi 99.8 3.6E-21 7.8E-26 174.7 7.0 174 96-277 10-260 (261)
377 cd03272 ABC_SMC3_euk Eukaryoti 99.8 1.7E-20 3.6E-25 168.8 7.3 174 78-265 4-224 (243)
378 cd02025 PanK Pantothenate kina 99.8 2.2E-19 4.7E-24 159.5 13.1 187 109-311 1-210 (220)
379 COG1245 Predicted ATPase, RNas 99.8 3.3E-20 7.1E-25 174.8 7.4 170 77-266 342-521 (591)
380 KOG0065 Pleiotropic drug resis 99.8 1.4E-19 3.1E-24 188.4 12.1 204 77-283 787-1021(1391)
381 COG1129 MglA ABC-type sugar tr 99.8 1E-19 2.3E-24 176.0 10.3 190 75-275 261-482 (500)
382 cd03279 ABC_sbcCD SbcCD and ot 99.8 5E-20 1.1E-24 162.8 7.4 165 77-266 5-198 (213)
383 COG4178 ABC-type uncharacteriz 99.8 1.2E-19 2.6E-24 178.8 10.7 175 76-266 391-579 (604)
384 cd03274 ABC_SMC4_euk Eukaryoti 99.8 8.1E-21 1.8E-25 167.8 1.2 166 78-264 6-193 (212)
385 KOG0066 eIF2-interacting prote 99.8 1.4E-19 3E-24 169.8 8.5 175 74-266 583-766 (807)
386 TIGR00554 panK_bact pantothena 99.8 2.7E-18 5.7E-23 157.8 13.3 191 105-311 60-278 (290)
387 PTZ00301 uridine kinase; Provi 99.8 7.9E-18 1.7E-22 148.3 15.6 184 108-311 4-189 (210)
388 KOG0927 Predicted transporter 99.8 9.5E-19 2.1E-23 167.9 9.2 200 77-295 75-321 (614)
389 KOG0062 ATPase component of AB 99.8 1.8E-18 3.8E-23 165.2 9.9 190 77-283 80-285 (582)
390 PRK09270 nucleoside triphospha 99.8 1.6E-17 3.5E-22 148.5 14.7 191 104-311 30-221 (229)
391 PRK00349 uvrA excinuclease ABC 99.8 2.2E-18 4.9E-23 179.6 10.5 94 191-284 810-928 (943)
392 COG0572 Udk Uridine kinase [Nu 99.8 1.5E-17 3.3E-22 145.2 14.0 183 105-311 6-190 (218)
393 COG3845 ABC-type uncharacteriz 99.8 5.5E-18 1.2E-22 161.6 11.9 204 75-284 255-493 (501)
394 cd03240 ABC_Rad50 The catalyti 99.7 2.2E-18 4.8E-23 151.4 7.9 143 102-265 18-187 (204)
395 KOG0060 Long-chain acyl-CoA tr 99.7 1.7E-17 3.8E-22 160.4 11.5 183 76-266 432-632 (659)
396 cd02023 UMPK Uridine monophosp 99.7 1E-16 2.3E-21 139.8 15.3 178 109-312 1-182 (198)
397 PRK00635 excinuclease ABC subu 99.7 8.4E-18 1.8E-22 182.6 9.1 117 166-283 762-906 (1809)
398 cd03276 ABC_SMC6_euk Eukaryoti 99.7 3E-17 6.5E-22 143.6 10.5 148 96-266 11-181 (198)
399 PF00485 PRK: Phosphoribulokin 99.7 7E-18 1.5E-22 147.0 6.0 185 109-312 1-189 (194)
400 KOG2355 Predicted ABC-type tra 99.7 4.4E-17 9.6E-22 139.9 10.6 191 77-274 13-228 (291)
401 TIGR00235 udk uridine kinase. 99.7 9.5E-17 2.1E-21 141.3 13.1 182 105-310 4-187 (207)
402 cd03275 ABC_SMC1_euk Eukaryoti 99.7 1.6E-17 3.4E-22 150.2 6.8 171 78-266 4-224 (247)
403 TIGR00630 uvra excinuclease AB 99.7 3.9E-17 8.4E-22 170.1 10.5 91 191-281 808-923 (924)
404 PRK05439 pantothenate kinase; 99.7 2.2E-16 4.7E-21 146.2 13.2 191 105-311 84-298 (311)
405 KOG0062 ATPase component of AB 99.7 6.1E-17 1.3E-21 154.8 7.8 178 75-266 360-544 (582)
406 PRK05480 uridine/cytidine kina 99.7 1.2E-15 2.6E-20 134.3 15.6 183 105-311 4-188 (209)
407 PLN02318 phosphoribulokinase/u 99.7 3.9E-16 8.4E-21 153.4 13.0 173 106-310 64-238 (656)
408 KOG0064 Peroxisomal long-chain 99.7 6.4E-17 1.4E-21 154.9 5.7 167 77-266 481-674 (728)
409 COG2401 ABC-type ATPase fused 99.6 4E-16 8.7E-21 146.0 7.7 160 95-266 397-573 (593)
410 KOG0065 Pleiotropic drug resis 99.6 3E-15 6.5E-20 156.5 12.2 188 94-283 128-351 (1391)
411 COG1072 CoaA Panthothenate kin 99.6 1.1E-14 2.4E-19 130.6 11.8 187 104-306 79-266 (283)
412 PLN02348 phosphoribulokinase 99.6 5E-14 1.1E-18 133.3 14.8 193 105-312 47-245 (395)
413 COG1245 Predicted ATPase, RNas 99.6 1.5E-15 3.3E-20 143.6 4.0 170 82-266 79-278 (591)
414 cd02029 PRK_like Phosphoribulo 99.6 1.4E-13 3E-18 124.1 16.2 184 109-312 1-203 (277)
415 cd03283 ABC_MutS-like MutS-lik 99.5 1.4E-14 3E-19 126.9 7.8 130 96-266 16-153 (199)
416 cd02026 PRK Phosphoribulokinas 99.5 2.1E-13 4.6E-18 124.9 15.0 176 109-312 1-178 (273)
417 PRK07429 phosphoribulokinase; 99.5 1.7E-12 3.6E-17 121.7 17.5 176 106-312 7-187 (327)
418 PRK00635 excinuclease ABC subu 99.5 1E-13 2.3E-18 151.1 10.6 94 191-284 1679-1797(1809)
419 cd03280 ABC_MutS2 MutS2 homolo 99.5 2.8E-14 6E-19 124.9 3.8 128 96-265 16-155 (200)
420 COG0178 UvrA Excinuclease ATPa 99.5 1.4E-13 3E-18 138.0 9.1 91 193-283 804-919 (935)
421 KOG0066 eIF2-interacting prote 99.5 3.1E-13 6.8E-18 127.5 10.7 173 78-266 265-474 (807)
422 cd02028 UMPK_like Uridine mono 99.4 8.1E-13 1.8E-17 113.8 11.7 175 109-310 1-179 (179)
423 PRK15453 phosphoribulokinase; 99.4 5.2E-12 1.1E-16 114.8 16.6 186 106-312 4-209 (290)
424 cd03282 ABC_MSH4_euk MutS4 hom 99.4 1.3E-13 2.8E-18 121.2 3.7 129 96-266 18-156 (204)
425 cd03277 ABC_SMC5_euk Eukaryoti 99.4 6.8E-13 1.5E-17 117.4 7.9 64 203-266 121-197 (213)
426 cd03227 ABC_Class2 ABC-type Cl 99.4 1.4E-12 3E-17 110.4 6.9 121 101-266 15-146 (162)
427 cd00820 PEPCK_HprK Phosphoenol 99.3 6.4E-13 1.4E-17 104.2 4.2 68 95-176 3-78 (107)
428 cd03239 ABC_SMC_head The struc 99.3 3.7E-12 8E-17 109.6 8.8 58 209-266 95-163 (178)
429 KOG0063 RNAse L inhibitor, ABC 99.3 3E-12 6.4E-17 120.6 7.6 155 97-266 352-522 (592)
430 cd03243 ABC_MutS_homologs The 99.3 2.2E-12 4.8E-17 113.1 5.0 128 99-266 21-156 (202)
431 cd03285 ABC_MSH2_euk MutS2 hom 99.3 1.5E-12 3.2E-17 115.9 3.2 127 96-264 19-156 (222)
432 cd02024 NRK1 Nicotinamide ribo 99.2 1E-10 2.2E-15 101.2 11.4 138 109-271 1-151 (187)
433 PRK06696 uridine kinase; Valid 99.2 1.2E-10 2.6E-15 103.6 11.3 184 105-312 20-211 (223)
434 cd03241 ABC_RecN RecN ATPase i 99.2 2.9E-11 6.4E-16 111.0 6.7 59 208-266 170-238 (276)
435 cd03281 ABC_MSH5_euk MutS5 hom 99.1 2.7E-10 5.9E-15 100.8 10.2 129 96-266 18-159 (213)
436 TIGR02858 spore_III_AA stage I 99.1 9.1E-11 2E-15 107.2 4.0 38 108-148 112-149 (270)
437 PLN02796 D-glycerate 3-kinase 99.1 1.5E-09 3.3E-14 101.6 11.6 187 96-297 81-316 (347)
438 TIGR03238 dnd_assoc_3 dnd syst 99.0 8.5E-11 1.8E-15 113.6 3.2 49 95-148 20-69 (504)
439 PRK07667 uridine kinase; Provi 99.0 4.9E-09 1.1E-13 91.3 13.9 167 106-309 16-193 (193)
440 cd03284 ABC_MutS1 MutS1 homolo 99.0 6.7E-10 1.4E-14 98.5 7.9 35 96-131 20-54 (216)
441 cd03242 ABC_RecF RecF is a rec 99.0 8.8E-10 1.9E-14 100.9 8.9 59 207-265 182-252 (270)
442 cd03287 ABC_MSH3_euk MutS3 hom 99.0 2.3E-09 4.9E-14 95.4 10.8 46 96-144 20-66 (222)
443 PRK06995 flhF flagellar biosyn 99.0 7.4E-10 1.6E-14 108.3 7.1 103 96-217 245-349 (484)
444 TIGR01069 mutS2 MutS2 family p 99.0 3.2E-10 7E-15 117.3 4.2 127 100-266 314-450 (771)
445 smart00534 MUTSac ATPase domai 98.9 1.9E-10 4.1E-15 99.5 0.8 61 204-265 57-126 (185)
446 cd01128 rho_factor Transcripti 98.9 5.2E-09 1.1E-13 94.6 8.8 57 208-266 129-199 (249)
447 cd01130 VirB11-like_ATPase Typ 98.9 2.5E-09 5.4E-14 92.5 6.4 47 97-146 15-61 (186)
448 PF02463 SMC_N: RecF/RecN/SMC 98.9 1.5E-09 3.3E-14 96.0 3.7 59 208-266 136-204 (220)
449 TIGR02788 VirB11 P-type DNA tr 98.9 1.3E-08 2.8E-13 95.0 9.8 41 100-143 137-177 (308)
450 KOG0063 RNAse L inhibitor, ABC 98.8 1.2E-09 2.7E-14 103.2 2.8 158 105-266 98-278 (592)
451 PLN03046 D-glycerate 3-kinase; 98.8 4.5E-08 9.9E-13 93.5 13.1 179 106-299 211-430 (460)
452 PRK06002 fliI flagellum-specif 98.8 6.5E-09 1.4E-13 100.6 7.5 79 75-160 137-230 (450)
453 PRK00349 uvrA excinuclease ABC 98.8 2.1E-09 4.6E-14 112.9 3.8 90 194-283 472-585 (943)
454 PRK08233 hypothetical protein; 98.8 1.5E-07 3.3E-12 80.3 13.3 80 228-311 79-161 (182)
455 cd03286 ABC_MSH6_euk MutS6 hom 98.7 3.7E-08 8E-13 87.4 8.1 36 96-131 19-54 (218)
456 PRK06547 hypothetical protein; 98.7 1.7E-07 3.6E-12 80.2 11.8 151 105-309 13-171 (172)
457 PRK07721 fliI flagellum-specif 98.7 3.2E-08 6.8E-13 96.2 8.1 47 96-146 148-194 (438)
458 PRK00064 recF recombination pr 98.7 3.9E-08 8.5E-13 93.7 7.9 59 207-265 272-343 (361)
459 TIGR00630 uvra excinuclease AB 98.7 1.5E-08 3.3E-13 106.3 4.8 82 202-283 481-583 (924)
460 PRK00409 recombination and DNA 98.7 5.9E-09 1.3E-13 108.2 1.3 127 98-266 319-455 (782)
461 PRK08533 flagellar accessory p 98.7 1.6E-07 3.4E-12 84.1 10.2 142 78-264 8-165 (230)
462 PRK07196 fliI flagellum-specif 98.7 1.4E-08 3E-13 98.2 3.4 80 95-180 144-240 (434)
463 COG4240 Predicted kinase [Gene 98.6 3.3E-07 7.2E-12 80.4 11.2 121 103-241 46-177 (300)
464 PRK14721 flhF flagellar biosyn 98.6 1.2E-07 2.5E-12 91.6 9.0 96 104-218 188-285 (420)
465 PTZ00132 GTP-binding nuclear p 98.6 9.7E-09 2.1E-13 90.5 0.3 45 207-251 149-200 (215)
466 PRK06315 type III secretion sy 98.6 5.7E-08 1.2E-12 94.2 5.3 103 94-200 152-276 (442)
467 PRK09862 putative ATP-dependen 98.4 2.5E-07 5.4E-12 91.4 5.9 64 80-150 187-250 (506)
468 PRK13695 putative NTPase; Prov 98.4 1E-07 2.2E-12 81.4 2.6 129 109-264 2-139 (174)
469 PRK07594 type III secretion sy 98.4 1.7E-07 3.8E-12 90.6 3.8 63 76-146 128-191 (433)
470 PF13555 AAA_29: P-loop contai 98.4 3.1E-07 6.7E-12 64.8 3.9 36 97-132 12-48 (62)
471 PRK08149 ATP synthase SpaL; Va 98.4 4.4E-07 9.5E-12 87.7 5.2 49 95-147 140-191 (428)
472 PRK14723 flhF flagellar biosyn 98.3 9.2E-07 2E-11 90.7 7.4 87 96-199 174-262 (767)
473 KOG2878 Predicted kinase [Gene 98.3 8E-06 1.7E-10 70.5 11.8 176 108-300 32-255 (282)
474 cd01136 ATPase_flagellum-secre 98.3 3.7E-07 7.9E-12 85.5 3.6 58 81-145 47-104 (326)
475 PRK09825 idnK D-gluconate kina 98.3 6.7E-07 1.5E-11 76.7 4.7 27 106-132 2-28 (176)
476 KOG4203 Armadillo/beta-Catenin 98.3 2.3E-06 5E-11 84.0 8.6 192 104-312 41-237 (473)
477 PRK01889 GTPase RsgA; Reviewed 98.3 9.5E-07 2.1E-11 84.1 5.3 63 97-162 185-252 (356)
478 PRK00300 gmk guanylate kinase; 98.2 1E-06 2.3E-11 76.9 4.5 28 105-132 3-30 (205)
479 PRK09099 type III secretion sy 98.2 8.3E-07 1.8E-11 86.2 4.0 48 95-146 152-199 (441)
480 TIGR00767 rho transcription te 98.2 1.3E-06 2.9E-11 83.4 5.1 53 77-132 130-193 (415)
481 TIGR02546 III_secr_ATP type II 98.2 9.2E-07 2E-11 85.8 3.8 46 96-145 135-180 (422)
482 PRK10078 ribose 1,5-bisphospho 98.2 1.3E-06 2.7E-11 75.5 4.0 26 107-132 2-27 (186)
483 TIGR01026 fliI_yscN ATPase Fli 98.2 1.1E-06 2.4E-11 85.6 3.7 48 95-146 152-199 (440)
484 PRK06793 fliI flagellum-specif 98.2 1.7E-06 3.7E-11 83.8 4.9 63 77-146 130-192 (432)
485 TIGR03498 FliI_clade3 flagella 98.2 1.1E-06 2.4E-11 84.9 3.5 62 78-146 115-176 (418)
486 PRK14722 flhF flagellar biosyn 98.2 3.2E-06 6.8E-11 80.6 6.0 73 94-183 124-196 (374)
487 TIGR03496 FliI_clade1 flagella 98.1 1.6E-06 3.5E-11 83.7 3.8 63 77-146 111-173 (411)
488 TIGR03497 FliI_clade2 flagella 98.1 1.7E-06 3.7E-11 83.6 3.9 48 96-147 127-174 (413)
489 TIGR00152 dephospho-CoA kinase 98.1 1.8E-05 4E-10 68.3 9.9 57 247-311 120-176 (188)
490 cd01131 PilT Pilus retraction 98.1 2E-05 4.3E-10 68.9 9.7 24 109-132 3-26 (198)
491 PLN03210 Resistant to P. syrin 98.1 8.9E-06 1.9E-10 88.6 9.2 44 100-145 200-243 (1153)
492 PRK05922 type III secretion sy 98.1 2.5E-06 5.4E-11 82.6 4.3 47 95-145 146-192 (434)
493 PRK10416 signal recognition pa 98.1 3.5E-06 7.7E-11 78.9 5.1 40 105-147 112-151 (318)
494 PRK07960 fliI flagellum-specif 98.1 1.8E-06 3.9E-11 83.7 3.1 48 96-147 165-215 (455)
495 cd01124 KaiC KaiC is a circadi 98.1 2E-05 4.3E-10 67.5 8.6 123 109-263 1-142 (187)
496 PRK08472 fliI flagellum-specif 98.1 3.3E-06 7.1E-11 81.9 4.0 62 79-147 133-194 (434)
497 PRK03846 adenylylsulfate kinas 98.1 3E-06 6.6E-11 73.9 3.5 38 105-145 22-60 (198)
498 COG0178 UvrA Excinuclease ATPa 98.1 3.8E-06 8.2E-11 85.4 4.5 84 201-284 474-578 (935)
499 PRK05688 fliI flagellum-specif 98.0 2.8E-06 6E-11 82.7 3.3 39 95-137 157-195 (451)
500 TIGR02322 phosphon_PhnN phosph 98.0 4.7E-06 1E-10 71.2 4.4 26 107-132 1-26 (179)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.4e-49 Score=336.62 Aligned_cols=199 Identities=18% Similarity=0.240 Sum_probs=177.3
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
||+++||+|+||+.. +|+|||++|++||+++|+||||||||||+|||++|.. |++|+|.++|.+.
T Consensus 2 mi~i~~l~K~fg~~~----VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~---~~~G~I~i~g~~~~~~~~~~~ 74 (240)
T COG1126 2 MIEIKNLSKSFGDKE----VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE---PDSGSITVDGEDVGDKKDILK 74 (240)
T ss_pred eEEEEeeeEEeCCeE----EecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC---CCCceEEECCEeccchhhHHH
Confidence 799999999999988 9999999999999999999999999999999999999 9999999999643
Q ss_pred -CCeEEEEecCCCCCCcccCCcccChHHHHH-hcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhc
Q 021362 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 -~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~-~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
++.+|+|||+ |++++ ++||.||+.++.. ..+.++++..+++.++|+++| +..+.|+.+|||||||||+|||||+
T Consensus 75 ~R~~vGmVFQ~-fnLFP-HlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALa 152 (240)
T COG1126 75 LRRKVGMVFQQ-FNLFP-HLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA 152 (240)
T ss_pred HHHhcCeeccc-ccccc-cchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHc
Confidence 3469999999 55553 6999999999754 567888888899999999999 4567788899999999999999999
Q ss_pred cCceEEEEcCCccccCh----hhHHHHHhhccce---EEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFDEK---WFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE----~~~~~l~~l~~~~---i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
.+++++++|+|+.-||+ ++++.++++.+++ ++|||+|.+|.+ |++ |++++.|+|+++...
T Consensus 153 M~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 153 MDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred CCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 99999999999999999 6677777777775 699999999998 777 999999999988643
No 2
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-45 Score=323.35 Aligned_cols=207 Identities=14% Similarity=0.157 Sum_probs=180.0
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
||+++|++|.|++.. +++|+||+|++||+++++|||||||||+||+|++++. |++|+|+++|++.
T Consensus 1 MI~~~nvsk~y~~~~----av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie---pt~G~I~i~g~~i~~~d~~~L 73 (309)
T COG1125 1 MIEFENVSKRYGNKK----AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE---PTSGEILIDGEDISDLDPVEL 73 (309)
T ss_pred CceeeeeehhcCCce----eeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC---CCCceEEECCeecccCCHHHH
Confidence 589999999999887 9999999999999999999999999999999999999 9999999999874
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc----CCCccCCCCCCcCCCcchhhhhhc
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN----QGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~----~~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
++.+||+-|.-..++ ++||.||+.+.....+++++...+++.++|+.+++ +.++++.+|||||+|||.+|+|++
T Consensus 74 Rr~IGYviQqigLFP--h~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALA 151 (309)
T COG1125 74 RRKIGYVIQQIGLFP--HLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALA 151 (309)
T ss_pred HHhhhhhhhhcccCC--CccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHh
Confidence 346999999865554 59999999999999888888888899999999994 457788899999999999999999
Q ss_pred cCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHHHHHHhc
Q 021362 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWRIEYN 289 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~~~~~~ 289 (313)
.++.+|++|+|+--||+ .+.+++.++.+ ..+|||||+++|.+ |++ |+++..+.|++++..
T Consensus 152 adP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~----- 226 (309)
T COG1125 152 ADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN----- 226 (309)
T ss_pred cCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC-----
Confidence 99999999999999999 44444444433 35799999999998 766 999999999999765
Q ss_pred CCchhHHhhh
Q 021362 290 DRPNAELIMK 299 (313)
Q Consensus 290 ~~~~~~~i~~ 299 (313)
|..+|+..
T Consensus 227 --Pan~FV~~ 234 (309)
T COG1125 227 --PANDFVED 234 (309)
T ss_pred --ccHHHHHH
Confidence 55555544
No 3
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-45 Score=343.42 Aligned_cols=210 Identities=16% Similarity=0.210 Sum_probs=176.1
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
++.|+++||+|.||+.. +|+|+||+|++||+++|+||||||||||||+|+|+.. |++|+|.++|++.
T Consensus 3 ~~~l~i~~v~k~yg~~~----av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~---p~~G~I~l~G~~i~~lpp~ 75 (352)
T COG3842 3 KPALEIRNVSKSFGDFT----AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ---PSSGEILLDGEDITDVPPE 75 (352)
T ss_pred CceEEEEeeeeecCCee----EEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence 45799999999999877 9999999999999999999999999999999999999 9999999999773
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCC-CCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhcc
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~-~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~ 225 (313)
.+.+++|||+ |-+++ +|||.||++|++...+. +.++..+++.++|+.++ ...++++.+|||||||||++|+||+.
T Consensus 76 kR~ig~VFQ~-YALFP-HltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~ 153 (352)
T COG3842 76 KRPIGMVFQS-YALFP-HMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVP 153 (352)
T ss_pred hcccceeecC-cccCC-CCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhc
Confidence 3569999999 44443 79999999999985443 33456678999999988 45677888999999999999999999
Q ss_pred CceEEEEcCCccccChhh----HHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHHHHHHhcC
Q 021362 226 QHKVVIVDGNYLFLDGGV----WKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWRIEYND 290 (313)
Q Consensus 226 ~ar~Li~d~~~lllDE~~----~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~~~~~~~ 290 (313)
++++|++|+|+.-||.++ ..+++++.++ .||||||.++++. |++ |++...|+|+|+..+
T Consensus 154 ~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~------ 227 (352)
T COG3842 154 EPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER------ 227 (352)
T ss_pred CcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC------
Confidence 999999999999999844 4444444433 4799999999998 776 999999999999554
Q ss_pred CchhHHhhhc
Q 021362 291 RPNAELIMKS 300 (313)
Q Consensus 291 ~~~~~~i~~~ 300 (313)
|...|+...
T Consensus 228 -P~~~fVA~F 236 (352)
T COG3842 228 -PATRFVADF 236 (352)
T ss_pred -cchHHHHHH
Confidence 555554443
No 4
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-44 Score=319.11 Aligned_cols=185 Identities=17% Similarity=0.211 Sum_probs=163.3
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC---CCCeE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---PPDVA 152 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~---~~~~i 152 (313)
.+++++++++.|++.. +|+|+||+|.+|||++|+||||||||||||+|+|+.+ |++|+|.++|.+ +...+
T Consensus 2 ~~l~i~~v~~~f~~~~----vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~---p~~G~V~~~g~~v~~p~~~~ 74 (248)
T COG1116 2 ALLEIEGVSKSFGGVE----VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK---PTSGEVLLDGRPVTGPGPDI 74 (248)
T ss_pred ceEEEEeeEEEeCceE----EeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCcccCCCCCCE
Confidence 4799999999999876 9999999999999999999999999999999999999 999999999976 34569
Q ss_pred EEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEE
Q 021362 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 153 ~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~L 230 (313)
+||||+...++ |+||.+|+.+++...+.+..+..+++.++|+.+|+ ..++++.+|||||||||+||+|++.++++|
T Consensus 75 ~~vFQ~~~LlP--W~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lL 152 (248)
T COG1116 75 GYVFQEDALLP--WLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLL 152 (248)
T ss_pred EEEeccCcccc--hhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEE
Confidence 99999966544 69999999999988877777777889999999994 567788899999999999999999999999
Q ss_pred EEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh
Q 021362 231 IVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL 269 (313)
Q Consensus 231 i~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~ 269 (313)
++|+|+--||+ ++.+.+.++..+ ++|||||+++|.. ||+
T Consensus 153 LlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRiv 202 (248)
T COG1116 153 LLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVV 202 (248)
T ss_pred EEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEE
Confidence 99999999999 555555555543 5799999999987 554
No 5
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-44 Score=335.87 Aligned_cols=201 Identities=17% Similarity=0.188 Sum_probs=177.2
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~----- 149 (313)
|.+|+++||+|.||+.. +|+++||+|+.||+++|+||||||||||||+|+||.. |++|+|.++|.+..
T Consensus 1 M~~i~l~~v~K~yg~~~----~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~---~~~G~I~i~g~~vt~l~P~ 73 (338)
T COG3839 1 MAELELKNVRKSFGSFE----VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE---PTSGEILIDGRDVTDLPPE 73 (338)
T ss_pred CcEEEEeeeEEEcCCce----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence 56899999999999876 8999999999999999999999999999999999999 99999999997643
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
+.+++|||+. .+++ +|||+||+.|+++..+.++.+..+++.++.+.++ ...++++.+|||||||||++|+|++.+
T Consensus 74 ~R~iamVFQ~y-ALyP-hmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~ 151 (338)
T COG3839 74 KRGIAMVFQNY-ALYP-HMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRK 151 (338)
T ss_pred HCCEEEEeCCc-cccC-CCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcC
Confidence 4699999994 4443 6999999999999999998888999999999998 557888889999999999999999999
Q ss_pred ceEEEEcCCccccChh----hHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 227 HKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 227 ar~Li~d~~~lllDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
++++++|+|+.-||.+ +..+|+++.+ ..|+||||..+++. |++ |++...|+|.++...
T Consensus 152 P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 152 PKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred CCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 9999999999999994 4444444433 24899999999998 665 999999999998643
No 6
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-44 Score=323.90 Aligned_cols=202 Identities=16% Similarity=0.176 Sum_probs=175.1
Q ss_pred EEEEccceEEccc-cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~-~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
||++++++|.|.. ....+.+|+||||+|++|||+||+|.||||||||+|||++|.+ |++|+|.++|++.
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~---PtsG~v~v~G~di~~l~~~~ 77 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER---PTSGSVFVDGQDLTALSEAE 77 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC---CCCceEEEcCEecccCChHH
Confidence 5899999999987 3234569999999999999999999999999999999999999 9999999999652
Q ss_pred ----CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhh
Q 021362 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~a 222 (313)
+++||++||+. ++.. ..||++|++|++...+.++++..+++.++|+.+| +..+.++.+|||||||||+||||
T Consensus 78 Lr~~R~~IGMIFQhF-nLLs-srTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARA 155 (339)
T COG1135 78 LRQLRQKIGMIFQHF-NLLS-SRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARA 155 (339)
T ss_pred HHHHHhhccEEeccc-cccc-cchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHH
Confidence 35699999994 4443 3799999999999999998889999999999999 44566777999999999999999
Q ss_pred hccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++.+|++|+.|+.+.-||+ .+++.|+++..+ .++|||.|+.+.. |+. |++++.|+..++..
T Consensus 156 La~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~ 231 (339)
T COG1135 156 LANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFA 231 (339)
T ss_pred HhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhc
Confidence 9999999999999999999 444444444433 3699999999998 776 99999999888743
No 7
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.7e-43 Score=304.39 Aligned_cols=207 Identities=17% Similarity=0.166 Sum_probs=176.8
Q ss_pred cEEEEccceEEc-cccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 76 PVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 76 ~~l~~~~l~~~y-~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
.+|+++||++.| +++. +|+||||+|++||+++|+||||||||||||+|+|+.. |++|+|.++|.+.
T Consensus 2 ~~i~~~nl~k~yp~~~~----aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d---~t~G~i~~~g~~i~~~~~k 74 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQ----ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD---PTSGEILFNGVQITKLKGK 74 (258)
T ss_pred ceEEEeeeeeecCCCce----eeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC---CCcceEEecccchhccchH
Confidence 479999999999 6666 9999999999999999999999999999999999999 9999999999663
Q ss_pred -----CCeEEEEecCCCCCCcccCCcccChHHHHH--------hcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcC
Q 021362 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHA--------RRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGV 213 (313)
Q Consensus 149 -----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~--------~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~ 213 (313)
++.+||+||++...+ .++|.+|+..+.. .++....+++..+.++|+++|. ....+..+|||||
T Consensus 75 ~lr~~r~~iGmIfQ~~nLv~--r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQ 152 (258)
T COG3638 75 ELRKLRRDIGMIFQQFNLVP--RLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQ 152 (258)
T ss_pred HHHHHHHhceeEeccCCccc--ccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcch
Confidence 235999999965444 4899999987642 3456667788889999999994 4556778999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCc
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKP 278 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~ 278 (313)
+|||+||+||+.++++++.|+|+.-||+ .+++.|+++..+ .++..|+++.|.+ |++ ||++++|++
T Consensus 153 QQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~ 232 (258)
T COG3638 153 QQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPA 232 (258)
T ss_pred hHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCCh
Confidence 9999999999999999999999999999 677777777643 3588899999999 888 999999999
Q ss_pred hHHHHHHHHhcCC
Q 021362 279 PDVAKWRIEYNDR 291 (313)
Q Consensus 279 ~ev~~~~~~~~~~ 291 (313)
.++-.+.+...+-
T Consensus 233 ~el~~~~~~~iYg 245 (258)
T COG3638 233 SELTDEALDEIYG 245 (258)
T ss_pred hhhhHHHHHHHhc
Confidence 8876665554443
No 8
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=5.5e-43 Score=313.29 Aligned_cols=206 Identities=17% Similarity=0.151 Sum_probs=176.8
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
+|+++||++.|+++. +|+|+||+|++|++++|+||||||||||||+|+|+++ |.+|+|.++|++.
T Consensus 2 ~L~~~~ls~~y~~~~----il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~---p~~G~V~l~g~~i~~~~~kel 74 (258)
T COG1120 2 MLEVENLSFGYGGKP----ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK---PKSGEVLLDGKDIASLSPKEL 74 (258)
T ss_pred eeEEEEEEEEECCee----EEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCCchhhcCHHHH
Confidence 699999999999888 9999999999999999999999999999999999999 9999999999773
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHh----cCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhh
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~----~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~a 222 (313)
.+.++|+||..... ..+||+|-+.++..- ++.+...|.+.+.++|+.++ ...++.+.+|||||||||.||+|
T Consensus 75 Ak~ia~vpQ~~~~~--~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArA 152 (258)
T COG1120 75 AKKLAYVPQSPSAP--FGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARA 152 (258)
T ss_pred hhhEEEeccCCCCC--CCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHH
Confidence 35799999996433 358999999887542 22234556667889999998 56778899999999999999999
Q ss_pred hccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHHHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWRIE 287 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~~~~ 287 (313)
++.++++|++|+|+..||. ++++.++++.++ +|+|.||++.+.+ +++ |++++.|.|++++.....
T Consensus 153 LaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l 232 (258)
T COG1120 153 LAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENL 232 (258)
T ss_pred HhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCHHHH
Confidence 9999999999999999999 788888888744 4799999999998 666 999999999998766544
Q ss_pred hcCC
Q 021362 288 YNDR 291 (313)
Q Consensus 288 ~~~~ 291 (313)
..++
T Consensus 233 ~~Vy 236 (258)
T COG1120 233 REVY 236 (258)
T ss_pred HHHh
Confidence 4433
No 9
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=7.2e-43 Score=304.50 Aligned_cols=200 Identities=20% Similarity=0.243 Sum_probs=171.5
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
.++|++++|+++||++. +++|+||+|++||+++|+||||||||||+|+|.|+++ |++|+|+++|.+.
T Consensus 6 ~~~I~vr~v~~~fG~~~----Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~---P~~GeI~i~G~~i~~ls~~ 78 (263)
T COG1127 6 EPLIEVRGVTKSFGDRV----ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR---PDKGEILIDGEDIPQLSEE 78 (263)
T ss_pred cceEEEeeeeeecCCEE----EecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC---CCCCeEEEcCcchhccCHH
Confidence 35899999999999998 9999999999999999999999999999999999999 9999999999873
Q ss_pred -----CCeEEEEecCCCCCCcccCCcccChHHHHHhc-CCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchh
Q 021362 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 149 -----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~i 219 (313)
.+++|++||++..+. .+||+||+.++++.+ ..++...++.+..-|+.+|+. .+.++.+|||||++|+++
T Consensus 79 ~~~~ir~r~GvlFQ~gALFs--sltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaL 156 (263)
T COG1127 79 ELYEIRKRMGVLFQQGALFS--SLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVAL 156 (263)
T ss_pred HHHHHHhheeEEeecccccc--ccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHH
Confidence 346999999987665 499999999987654 466666677777888888854 456777999999999999
Q ss_pred hhhhccCceEEEEcCCccccCh----hhHHHHHhhcc---c-eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 220 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---E-KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 220 a~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~---~-~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
|||++.++.+|+.|+|+..||+ .+-+.|+++.+ . .++||||++.+.. |++ |++++.|+++++..
T Consensus 157 ARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 157 ARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred HHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999999999 33333333333 2 4799999999988 665 99999999999865
No 10
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=8.4e-43 Score=293.94 Aligned_cols=191 Identities=18% Similarity=0.131 Sum_probs=164.5
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
||+++||+|.|++.. .+|+||||+|++||++.|+||||||||||+|+|.+..+ |++|+|+++|.+.
T Consensus 1 mI~f~~V~k~Y~~g~---~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~---pt~G~i~~~~~dl~~l~~~~i 74 (223)
T COG2884 1 MIRFENVSKAYPGGR---EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER---PTRGKILVNGHDLSRLKGREI 74 (223)
T ss_pred CeeehhhhhhcCCCc---hhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc---CCCceEEECCeeccccccccc
Confidence 589999999998643 39999999999999999999999999999999999999 9999999999772
Q ss_pred ---CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhh
Q 021362 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al 223 (313)
+++||+||||.-.++ ++||+||+++++...|.+..+..+++.++|+.+|+. .+..+.+|||||||||+||+|+
T Consensus 75 P~LRR~IGvVFQD~rLL~--~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAi 152 (223)
T COG2884 75 PFLRRQIGVVFQDFRLLP--DRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAI 152 (223)
T ss_pred chhhheeeeEeeeccccc--cchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHH
Confidence 356999999954444 489999999999999999888999999999999954 4456679999999999999999
Q ss_pred ccCceEEEEcCCccccChhhHHHHHhhcc-------ceEEEEcChHHHHH---HHh----hccccc
Q 021362 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKWFIEVDLDTAMQ---RVL----KRHIST 275 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE~~~~~l~~l~~-------~~i~vtHd~~~~~~---rv~----griv~~ 275 (313)
+.++.+|+.|+|+--||+..-.+|.+++. .+++.|||.+.+.. |++ ||++.+
T Consensus 153 V~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d 218 (223)
T COG2884 153 VNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRD 218 (223)
T ss_pred ccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEec
Confidence 99999999999999999944444444333 34799999999988 555 777754
No 11
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-42 Score=309.65 Aligned_cols=203 Identities=16% Similarity=0.153 Sum_probs=171.2
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-----C
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----P 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-----~ 149 (313)
|++|+++|+++.|++.. +|+||||+|++|++++|+||||||||||+|+|+|+++ |++|+|.+.|.+. .
T Consensus 2 ~~~i~v~nl~v~y~~~~----vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~---p~~G~i~~~g~~~~~~~~~ 74 (254)
T COG1121 2 MPMIEVENLTVSYGNRP----VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK---PSSGEIKIFGKPVRKRRKR 74 (254)
T ss_pred CcEEEEeeeEEEECCEe----eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCcceEEEccccccccccC
Confidence 56899999999999656 9999999999999999999999999999999999999 9999999998752 2
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHh----cCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhh
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~----~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al 223 (313)
.+||||||....-....+||+|.+..+... .+.+.+.+.+.+.++|++++ ...++.+.+|||||+|||.||+||
T Consensus 75 ~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL 154 (254)
T COG1121 75 LRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARAL 154 (254)
T ss_pred CeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHh
Confidence 469999996422222238999998886322 22334556788999999999 567889999999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh---hcccccCCchHHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL---KRHISTGKPPDVAKW 284 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~---griv~~G~~~ev~~~ 284 (313)
+.+|++|++|+|+..+|. .+.+.|.++.++ +++||||++.+.. +++ +++++.|+++++...
T Consensus 155 ~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~~~~G~~~~~~~~ 228 (254)
T COG1121 155 AQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPPEEVLTE 228 (254)
T ss_pred ccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCeeEeccChhhccCH
Confidence 999999999999999999 555666666554 4699999999998 666 888999999998764
No 12
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.3e-43 Score=313.66 Aligned_cols=207 Identities=18% Similarity=0.262 Sum_probs=174.3
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCC---CC-----
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV---KP----- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~---~~----- 148 (313)
+|.+++++|.|+... +++|||++|+.||.++|+||||||||||||+|+||+. |++|.|.++|+ +.
T Consensus 2 ~i~i~~~~~~~~~~~----a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~---p~~G~I~~~~~~l~D~~~~~~ 74 (345)
T COG1118 2 SIRINNVKKRFGAFG----ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET---PDAGRIRLNGRVLFDVSNLAV 74 (345)
T ss_pred ceeehhhhhhccccc----ccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC---CCCceEEECCEeccchhccch
Confidence 589999999999988 9999999999999999999999999999999999999 99999999998 42
Q ss_pred -CCeEEEEecCCCCCCcccCCcccChHHHHHhcC-CC-CCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhh
Q 021362 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-AP-WTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 -~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~-~~-~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al 223 (313)
.++||||||+. .+++ +|||.+|++|++..+. .+ ....+.++.++|+.+. ...++|+.+|||||+|||++|+|+
T Consensus 75 ~~R~VGfvFQ~Y-ALF~-HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARAL 152 (345)
T COG1118 75 RDRKVGFVFQHY-ALFP-HMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARAL 152 (345)
T ss_pred hhcceeEEEech-hhcc-cchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHh
Confidence 34699999994 4443 7999999999986552 22 3456778899998877 456778889999999999999999
Q ss_pred ccCceEEEEcCCccccChhhHHHHHhhc----cc----eEEEEcChHHHHH---HHh----hcccccCCchHHHHHHHHh
Q 021362 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMF----DE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWRIEY 288 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE~~~~~l~~l~----~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~~~~~ 288 (313)
+..+++|++|+|+--||.++.+++++.. ++ .+|||||.+++.+ |++ |+|...|+++|+...
T Consensus 153 A~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~---- 228 (345)
T COG1118 153 AVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDH---- 228 (345)
T ss_pred hcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcC----
Confidence 9999999999999999996665555544 32 4799999999999 776 999999999999543
Q ss_pred cCCchhHHhhh
Q 021362 289 NDRPNAELIMK 299 (313)
Q Consensus 289 ~~~~~~~~i~~ 299 (313)
|+..|+.+
T Consensus 229 ---P~s~fV~~ 236 (345)
T COG1118 229 ---PASRFVAR 236 (345)
T ss_pred ---CCccceec
Confidence 66555433
No 13
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-42 Score=301.68 Aligned_cols=205 Identities=15% Similarity=0.131 Sum_probs=175.8
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
|++|+++||++.|+.......+|++|||+|.+||++||+|+||||||||+++|+|+.+ |++|+|.++|.+.
T Consensus 1 ~~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~---p~~G~I~~~G~~~~~~~~~ 77 (252)
T COG1124 1 MTLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK---PSSGSILLDGKPLAPKKRA 77 (252)
T ss_pred CceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC---CCCceEEECCcccCccccc
Confidence 3589999999999876544569999999999999999999999999999999999999 9999999999642
Q ss_pred ---CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---CCCccCCCCCCcCCCcchhhhh
Q 021362 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ---~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~LSgG~kqRv~ia~a 222 (313)
.+.+.+||||++.-.++..||.+.+..++...+.+. ...++.++|+.++. ..++++.+|||||+||++||+|
T Consensus 78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~--~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARA 155 (252)
T COG1124 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSK--SQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARA 155 (252)
T ss_pred hhhccceeEEecCCccccCcchhHHHHHhhhhccCCccH--HHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHH
Confidence 345899999999888888999999999887766554 34458899999994 4577888999999999999999
Q ss_pred hccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
++.++++||+|+++.-||- .+|+.+.++.++ .+|||||+..+.. |++ |++++.++..++...
T Consensus 156 L~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 156 LIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred hccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 9999999999999999998 566666666554 3799999999998 766 999999998887543
No 14
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4.5e-42 Score=301.85 Aligned_cols=188 Identities=16% Similarity=0.120 Sum_probs=158.0
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC---------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------- 147 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~--------- 147 (313)
+++++||+|.|+.....+.+|+++||+|++||+++|+|||||||||||++|.|+.+ |++|.|+++|++
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~---pt~G~v~i~g~d~~~l~~~~~ 77 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PTSGEVLINGKDLTKLSEKEL 77 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEcCcCCHHHH
Confidence 47899999999765444669999999999999999999999999999999999999 999999999965
Q ss_pred ---CCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CC-ccCCCCCCcCCCcchhhh
Q 021362 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GS-VYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 148 ---~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~-~~~~~LSgG~kqRv~ia~ 221 (313)
+.+.+|||||+...++ .+|+.||+.+++...+.+.....+++.++++.++.. .. +++.+|||||||||+|||
T Consensus 78 ~~~R~~~iGfvFQ~~nLl~--~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIAR 155 (226)
T COG1136 78 AKLRRKKIGFVFQNFNLLP--DLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIAR 155 (226)
T ss_pred HHHHHHhEEEECccCCCCC--CCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHH
Confidence 2346999999954444 599999999998777665444566778888888843 34 456699999999999999
Q ss_pred hhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH--HHh
Q 021362 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ--RVL 269 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~--rv~ 269 (313)
|++.++++++.|+|+--||+ .+++.+.++.++ .++||||...+.. |++
T Consensus 156 AL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i 213 (226)
T COG1136 156 ALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVI 213 (226)
T ss_pred HHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEE
Confidence 99999999999999999999 567777776543 4799999999987 554
No 15
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.5e-42 Score=307.43 Aligned_cols=204 Identities=17% Similarity=0.210 Sum_probs=177.8
Q ss_pred cEEEEccceEEcccccc--------------------ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccC
Q 021362 76 PVVEARCMDEVYDALAQ--------------------RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIW 135 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~--------------------~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~ 135 (313)
..|+++|++|.||.+.. .+..++|+||+|+.|||+.|+|-||||||||+|+|++|+.
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--- 79 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--- 79 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC---
Confidence 46999999999986532 2446899999999999999999999999999999999999
Q ss_pred CCCceeecCCCC------------CCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cC
Q 021362 136 PQKASSFDSQVK------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQ 201 (313)
Q Consensus 136 p~~G~i~~~g~~------------~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~ 201 (313)
|++|+|.++|.+ +++.+++|||....++ +.||.||..|++...|.++.+..+++.++|+.+| ..
T Consensus 80 pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlP--hrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~ 157 (386)
T COG4175 80 PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLP--HRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGY 157 (386)
T ss_pred CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcccc--chhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhh
Confidence 999999999987 3456999999944444 6999999999999999999999999999999999 45
Q ss_pred CCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhh----ccceEEEEcChHHHHH---HHh-
Q 021362 202 GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSM----FDEKWFIEVDLDTAMQ---RVL- 269 (313)
Q Consensus 202 ~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l----~~~~i~vtHd~~~~~~---rv~- 269 (313)
.++++.+|||||||||.+|+|++.++.+|++|+++.-||+ ++.++|.++ .+.++|||||++++++ |+.
T Consensus 158 ~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIai 237 (386)
T COG4175 158 ADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAI 237 (386)
T ss_pred hhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEE
Confidence 6778889999999999999999999999999999999999 444444444 3446799999999999 766
Q ss_pred ---hcccccCCchHHHHH
Q 021362 270 ---KRHISTGKPPDVAKW 284 (313)
Q Consensus 270 ---griv~~G~~~ev~~~ 284 (313)
|+++..|+|+|++..
T Consensus 238 mkdG~ivQ~Gtp~eIl~~ 255 (386)
T COG4175 238 MKDGEIVQVGTPEEILLN 255 (386)
T ss_pred ecCCeEEEeCCHHHHHcC
Confidence 999999999999754
No 16
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.2e-40 Score=306.01 Aligned_cols=201 Identities=18% Similarity=0.215 Sum_probs=177.1
Q ss_pred ccEEEEccceEEcc-ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC----
Q 021362 75 IPVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~-~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~---- 149 (313)
+.+++++||+|.|+ +.. +|+||||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 2 ~~~i~~~~l~k~~~~~~~----~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~---p~~G~i~i~G~~~~~~~~ 74 (293)
T COG1131 2 IEVIEVRNLTKKYGGDKT----ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK---PTSGEILVLGYDVVKEPA 74 (293)
T ss_pred CceeeecceEEEeCCCCE----EEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEEcCEeCccCHH
Confidence 34689999999999 577 9999999999999999999999999999999999999 99999999997643
Q ss_pred ---CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCC--CccCCCCCCcCCCcchhhhhhc
Q 021362 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 150 ---~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~LSgG~kqRv~ia~al~ 224 (313)
+.+||++|++.+++ .+|++||+.+....++.+...+.+++.++++.+++.. ++++.+||+|||||+.||.||+
T Consensus 75 ~~~~~igy~~~~~~~~~--~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~ 152 (293)
T COG1131 75 KVRRRIGYVPQEPSLYP--ELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALL 152 (293)
T ss_pred HHHhheEEEccCCCCCc--cccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHh
Confidence 35999999976444 5999999999999888665556778999999999665 6678899999999999999999
Q ss_pred cCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
.+|++|++|+|+..||+ .+++.|+++.++ ++++||.++++.. |++ |++++.|++.++...
T Consensus 153 ~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 153 HDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999 788888888764 3599999999998 555 999999988886544
No 17
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-40 Score=293.59 Aligned_cols=202 Identities=14% Similarity=0.153 Sum_probs=177.6
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
++++++++++.|++. ..+|+++||+|++|++++|+|+||||||||+++++|+++ |++|.|.++|.+.
T Consensus 2 ~~i~~~~l~~~y~~~---~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~---p~~G~v~~~g~~~~~~~~~~ 75 (235)
T COG1122 2 RMIEAENLSFRYPGR---KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK---PTSGEVLVDGLDTSSEKSLL 75 (235)
T ss_pred ceEEEEEEEEEcCCC---ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc---CCCCEEEECCeeccchhhHH
Confidence 479999999999875 229999999999999999999999999999999999999 9999999999753
Q ss_pred --CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhc
Q 021362 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 --~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
.+.+|||||++..... .-||.+.++|+....+.+.++...++.++++.++ ...++.+.+|||||||||+||.+++
T Consensus 76 ~~~~~vG~VfQnpd~q~~-~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa 154 (235)
T COG1122 76 ELRQKVGLVFQNPDDQLF-GPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLA 154 (235)
T ss_pred HhhcceEEEEECcccccc-cCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHH
Confidence 4569999999865443 3599999999999999988778888999999998 3466777799999999999999999
Q ss_pred cCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
.++++|++|||+..||. .+++.++++..+ .|++|||++.+.. |++ |+++.+|+|.++..+
T Consensus 155 ~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 155 MGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 99999999999999999 566666666544 5799999999998 555 999999999988775
No 18
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.8e-40 Score=281.05 Aligned_cols=200 Identities=13% Similarity=0.114 Sum_probs=167.0
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC-----CceeecCCCCC-
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSFDSQVKP- 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~-----~G~i~~~g~~~- 148 (313)
++.++++||++.||++. +|+|||++|+++++++|+||||||||||||+++.+.. .. +|+|.++|++.
T Consensus 5 ~~~~~~~~l~~yYg~~~----aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmnd---l~~~~r~~G~v~~~g~ni~ 77 (253)
T COG1117 5 IPAIEVRDLNLYYGDKH----ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMND---LIPGARVEGEVLLDGKNIY 77 (253)
T ss_pred cceeEecceeEEECchh----hhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcc---cCcCceEEEEEEECCeecc
Confidence 35799999999999888 9999999999999999999999999999999999986 44 49999999773
Q ss_pred ---------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh------cCCCccCCCCCCcC
Q 021362 149 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR------NQGSVYAPSFDHGV 213 (313)
Q Consensus 149 ---------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~------~~~~~~~~~LSgG~ 213 (313)
++++|+|||.+..++ ++++||+.++.+.+|.....-.+.+++.|+... +..+.....|||||
T Consensus 78 ~~~~d~~~lRr~vGMVFQkPnPFp---~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQ 154 (253)
T COG1117 78 DPKVDVVELRRRVGMVFQKPNPFP---MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQ 154 (253)
T ss_pred CCCCCHHHHHHHheeeccCCCCCC---chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhH
Confidence 346999999987554 899999999999888765444555666666544 34455666999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HHh----hcccccCCchH
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv~----griv~~G~~~e 280 (313)
|||++|||+++.++.+|++|+|+.-||+ ++-+.|.++.++ +++|||+|..|.+ +.. |++++.|++++
T Consensus 155 QQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~ 234 (253)
T COG1117 155 QQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK 234 (253)
T ss_pred HHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence 9999999999999999999999999999 455555555544 4799999999988 333 99999999999
Q ss_pred HHHH
Q 021362 281 VAKW 284 (313)
Q Consensus 281 v~~~ 284 (313)
+...
T Consensus 235 iF~~ 238 (253)
T COG1117 235 IFTN 238 (253)
T ss_pred hhcC
Confidence 8643
No 19
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-40 Score=283.43 Aligned_cols=200 Identities=18% Similarity=0.147 Sum_probs=175.2
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------C
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------P 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------~ 149 (313)
||++.+++|+|+... .+++||||++++|+++||+|||||||||+||+|++++. |++|.|+++|.+. +
T Consensus 1 Ml~v~~l~K~y~~~v---~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~---P~~G~v~idg~d~~~~p~~vr 74 (245)
T COG4555 1 MLEVTDLTKSYGSKV---QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI---PDSGKVTIDGVDTVRDPSFVR 74 (245)
T ss_pred CeeeeehhhhccCHH---hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc---CCCceEEEeecccccChHHHh
Confidence 589999999999854 38999999999999999999999999999999999999 9999999999773 3
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccCc
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~a 227 (313)
+.+|+++-. ..++. .||++||+.|..+++++...+...+..++.+.|+ ...++++.+||.||||||+||+|++++|
T Consensus 75 r~IGVl~~e-~glY~-RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P 152 (245)
T COG4555 75 RKIGVLFGE-RGLYA-RLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDP 152 (245)
T ss_pred hhcceecCC-cChhh-hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCC
Confidence 468988844 33333 5999999999999999988888888999999988 4578899999999999999999999999
Q ss_pred eEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 228 KVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 228 r~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
+++++|+|+..||- .+.+.|.++..+ ++|.||+|+++.. |++ |.++..|.++++...
T Consensus 153 ~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 153 SILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred CeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 99999999999998 556666666554 4799999999997 666 999999999888665
No 20
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-40 Score=311.42 Aligned_cols=201 Identities=15% Similarity=0.175 Sum_probs=170.3
Q ss_pred CccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-----
Q 021362 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 74 ~m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~----- 148 (313)
+|++|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~~ 75 (351)
T PRK11432 3 QKNFVVLKNITKRFGSNT----VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK---PTEGQIFIDGEDVTHRSI 75 (351)
T ss_pred CCcEEEEEeEEEEECCeE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCH
Confidence 467899999999998766 9999999999999999999999999999999999999 9999999999653
Q ss_pred -CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhcc
Q 021362 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 -~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~ 225 (313)
.+.++|+||+...++ ++|++||+.++...++.+..+..+++.++++.++. ..++++.+|||||||||+||+|++.
T Consensus 76 ~~r~ig~vfQ~~~lfp--~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~ 153 (351)
T PRK11432 76 QQRDICMVFQSYALFP--HMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALIL 153 (351)
T ss_pred HHCCEEEEeCCcccCC--CCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 256999999965443 58999999998766555544456678889998884 3567788999999999999999999
Q ss_pred CceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 226 ~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++++|++|+|+..||. .+++.|+++.+ ..++||||++++.. |++ |+++..|+++++..
T Consensus 154 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~ 226 (351)
T PRK11432 154 KPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYR 226 (351)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999 44455555433 24799999999977 665 99999999988854
No 21
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=4.6e-40 Score=311.07 Aligned_cols=200 Identities=14% Similarity=0.168 Sum_probs=170.6
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~----- 149 (313)
|++|+++|+++.|++.. +|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|++..
T Consensus 2 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~ 74 (353)
T TIGR03265 2 SPYLSIDNIRKRFGAFT----ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER---QTAGTIYQGGRDITRLPPQ 74 (353)
T ss_pred CcEEEEEEEEEEeCCeE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHH
Confidence 56899999999998766 9999999999999999999999999999999999999 99999999996532
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
+.++|+||+...++ ++|++||+.++...++.+..+...++.++++.++. ..++++.+|||||||||+||+|++.+
T Consensus 75 ~r~ig~v~Q~~~lfp--~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~ 152 (353)
T TIGR03265 75 KRDYGIVFQSYALFP--NLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATS 152 (353)
T ss_pred HCCEEEEeCCcccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 45999999955443 59999999998766555444456678899999884 35678889999999999999999999
Q ss_pred ceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 227 HKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 227 ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+++|++|+|+..||. .+++.|+++.++ .|+||||++++.. |++ |++++.|+++++..
T Consensus 153 P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 153 PGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999 455555555432 4799999999987 555 99999999988864
No 22
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-40 Score=312.81 Aligned_cols=200 Identities=16% Similarity=0.122 Sum_probs=169.0
Q ss_pred ccEEEEccceEEc-cccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-----
Q 021362 75 IPVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 75 m~~l~~~~l~~~y-~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~----- 148 (313)
|.+|+++|+++.| ++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 m~~l~i~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~ 73 (356)
T PRK11650 1 MAGLKLQAVRKSYDGKTQ----VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGGRVVNELEP 73 (356)
T ss_pred CCEEEEEeEEEEeCCCCE----EEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCH
Confidence 4579999999999 6655 9999999999999999999999999999999999999 9999999999753
Q ss_pred -CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhcc
Q 021362 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 -~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~ 225 (313)
.+.++|+||+...++ ++||+||+.++...++.+.....+++.++++.++. ..++++.+|||||||||+||+|++.
T Consensus 74 ~~r~ig~v~Q~~~lfp--~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~ 151 (356)
T PRK11650 74 ADRDIAMVFQNYALYP--HMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVR 151 (356)
T ss_pred HHCCEEEEeCCccccC--CCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 246999999965443 59999999998765554444445678889998884 4567788999999999999999999
Q ss_pred CceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 226 ~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++++|++|+|+..||. .+++.|+++.++ .|+||||++++.. |++ |++++.|+++++..
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~ 224 (356)
T PRK11650 152 EPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYE 224 (356)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHh
Confidence 9999999999999998 455556555442 4799999999987 554 99999999998854
No 23
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.1e-41 Score=286.56 Aligned_cols=202 Identities=17% Similarity=0.222 Sum_probs=172.5
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCC----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD---- 150 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~---- 150 (313)
|.+|.++||.|+|+++. ++++|||+|++||+|||+|||||||||.+.++.|+.+ |++|.|.+++.+...
T Consensus 2 ~~~L~a~~l~K~y~kr~----Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~---~d~G~i~ld~~diT~lPm~ 74 (243)
T COG1137 2 MSTLVAENLAKSYKKRK----VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR---PDSGKILLDDEDITKLPMH 74 (243)
T ss_pred CcEEEehhhhHhhCCee----eeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe---cCCceEEECCcccccCChH
Confidence 56899999999999988 9999999999999999999999999999999999999 999999999988543
Q ss_pred -----eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCC--ccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhh
Q 021362 151 -----VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT--FNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 151 -----~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~--~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~ 221 (313)
-+||++|++..+- .+||.||+...+..+..... +...++.++|+.|. ...+.+..+||||||+|+.||+
T Consensus 75 ~RArlGigYLpQE~SIFr--~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIAR 152 (243)
T COG1137 75 KRARLGIGYLPQEASIFR--KLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIAR 152 (243)
T ss_pred HHhhcCcccccccchHhh--cCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHH
Confidence 3899999976544 59999999998887654333 44455778999888 4466777799999999999999
Q ss_pred hhccCceEEEEcCCccccCh----hhHHHHHhhccce---EEEEcChHHHHH---HHh----hcccccCCchHHHHHH
Q 021362 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEK---WFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWR 285 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~~---i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~~ 285 (313)
|++.+++.+++|+|+...|+ ++.+.|+.+.+.+ ++.+|+..+.+. |.. |++++.|+|++++...
T Consensus 153 aLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 153 ALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred HHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 99999999999999999999 5666666666654 477799999887 443 9999999999998653
No 24
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.1e-39 Score=306.93 Aligned_cols=202 Identities=15% Similarity=0.129 Sum_probs=168.2
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
||+++|++|.|++......+|+|+||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~---p~~G~I~i~G~~i~~~~~~~l 77 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTSGSVIVDGQDLTTLSNSEL 77 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHHHH
Confidence 48999999999632112349999999999999999999999999999999999999 9999999999753
Q ss_pred ---CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhh
Q 021362 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al 223 (313)
.+.++|+||+...+. .+|++||+.++....+.+.....+++.++++.++. ..++++.+|||||||||+||+|+
T Consensus 78 ~~~r~~Ig~v~Q~~~l~~--~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL 155 (343)
T TIGR02314 78 TKARRQIGMIFQHFNLLS--SRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARAL 155 (343)
T ss_pred HHHhcCEEEEECCccccc--cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 236999999965433 48999999998765555544556678899999884 45677889999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+.++++|++|+++..||. .+++.|+++.++ .+++|||++.+.+ |++ |++++.|++.++..
T Consensus 156 ~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 156 ASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 999999999999999999 566666666432 4799999999977 665 99999999988753
No 25
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.8e-39 Score=301.89 Aligned_cols=200 Identities=18% Similarity=0.168 Sum_probs=170.5
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
++|+++||+|.|++.. +|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 6 ~~i~i~~l~k~~~~~~----~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~---p~~G~v~i~G~~~~~~~~~~ 78 (306)
T PRK13537 6 APIDFRNVEKRYGDKL----VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH---PDAGSISLCGEPVPSRARHA 78 (306)
T ss_pred ceEEEEeEEEEECCeE----EEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEecccchHHH
Confidence 4799999999998766 9999999999999999999999999999999999999 99999999997642
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
+.++|++|++..++ .+|++||+.+....++.+......++.++++.++. ..++++.+||+|||||++||+|++++
T Consensus 79 ~~~ig~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~ 156 (306)
T PRK13537 79 RQRVGVVPQFDNLDP--DFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVND 156 (306)
T ss_pred HhcEEEEeccCcCCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCC
Confidence 46999999965443 48999999987666665444445567788888874 34667889999999999999999999
Q ss_pred ceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 227 HKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 227 ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
+++|++|+|+..||. .+++.|+++.++ .+++||+++++.. |++ |++++.|+++++...
T Consensus 157 P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 157 PDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999 677777777543 4699999999977 655 999999999988654
No 26
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=2.5e-39 Score=307.85 Aligned_cols=200 Identities=17% Similarity=0.194 Sum_probs=168.4
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
+++|+++|+++.|++.. +|+++||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 12 ~~~L~l~~l~~~~~~~~----~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~~~ 84 (375)
T PRK09452 12 SPLVELRGISKSFDGKE----VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET---PDSGRIMLDGQDITHVPAE 84 (375)
T ss_pred CceEEEEEEEEEECCeE----EEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCHH
Confidence 45799999999998766 9999999999999999999999999999999999999 9999999999753
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
.+.++|+||+...++ ++||+||+.++...++.+.....+++.++++.++. ..++++.+|||||||||+||+|++.+
T Consensus 85 ~r~ig~vfQ~~~lfp--~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~ 162 (375)
T PRK09452 85 NRHVNTVFQSYALFP--HMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNK 162 (375)
T ss_pred HCCEEEEecCcccCC--CCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 245999999965443 58999999998765554443345577888888884 35677789999999999999999999
Q ss_pred ceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 227 HKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 227 ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+++|++|+|+..||. .+++.|+++.++ .|+||||++++.. |++ |+++..|++.++..
T Consensus 163 P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~ 234 (375)
T PRK09452 163 PKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYE 234 (375)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999 455555555432 4799999999887 655 99999999988854
No 27
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-39 Score=306.10 Aligned_cols=200 Identities=15% Similarity=0.172 Sum_probs=168.2
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
+++|+++|++|.|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 17 ~~~l~l~~v~~~~~~~~----~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~~ 89 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQH----AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ---PTAGQIMLDGVDLSHVPPY 89 (377)
T ss_pred CceEEEEeEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCHH
Confidence 45899999999998766 9999999999999999999999999999999999999 9999999999753
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
.+.++|+||+...++ ++|+.||+.++....+.+..+..+++.++++.++. ..++++.+|||||||||+||+|++.+
T Consensus 90 ~r~ig~vfQ~~~lfp--~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~ 167 (377)
T PRK11607 90 QRPINMMFQSYALFP--HMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKR 167 (377)
T ss_pred HCCEEEEeCCCccCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 246999999965443 59999999998765554444445677888888884 35677889999999999999999999
Q ss_pred ceEEEEcCCccccChhhH----HHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 227 HKVVIVDGNYLFLDGGVW----KDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 227 ar~Li~d~~~lllDE~~~----~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+++|++|+|+..||.... +.|+++.++ .|+||||++++.. |++ |+++..|+++++..
T Consensus 168 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 168 PKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 999999999999999443 444454332 4799999999887 655 99999999998864
No 28
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=4.1e-39 Score=303.18 Aligned_cols=201 Identities=18% Similarity=0.178 Sum_probs=170.2
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
+++|+++||+|.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 39 ~~~i~i~nl~k~y~~~~----~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~---p~~G~i~i~G~~~~~~~~~ 111 (340)
T PRK13536 39 TVAIDLAGVSKSYGDKA----VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS---PDAGKITVLGVPVPARARL 111 (340)
T ss_pred ceeEEEEEEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCceEEEECCEECCcchHH
Confidence 45899999999999876 9999999999999999999999999999999999999 9999999999763
Q ss_pred -CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhcc
Q 021362 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 -~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~ 225 (313)
.+.++|++|+...+. .+|+.||+.+....++.+.....+++.++++.++.. .++++.+||+|||||++||+|+++
T Consensus 112 ~~~~ig~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~ 189 (340)
T PRK13536 112 ARARIGVVPQFDNLDL--EFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALIN 189 (340)
T ss_pred HhccEEEEeCCccCCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhc
Confidence 245999999965433 489999998766555544333445667888888743 577888999999999999999999
Q ss_pred CceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 226 ~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
++++|++|+|+..||+ .+++.|+++.+. ++++||+++++.. |++ |++++.|+++++...
T Consensus 190 ~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 190 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999 667777776443 4799999999987 655 999999999998654
No 29
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-39 Score=284.62 Aligned_cols=200 Identities=20% Similarity=0.195 Sum_probs=167.0
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCC-----
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD----- 150 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~----- 150 (313)
+++++++|+|.||+.. +++||||++++||++||+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 3 ~lL~v~~l~k~FGGl~----Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~---P~~G~v~~~G~~it~l~p~~ 75 (250)
T COG0411 3 PLLEVRGLSKRFGGLT----AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK---PSSGTVIFRGRDITGLPPHR 75 (250)
T ss_pred ceeeeccceeecCCEE----EEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc---CCCceEEECCcccCCCCHHH
Confidence 5799999999999998 9999999999999999999999999999999999999 999999999987432
Q ss_pred ----eEEEEecCCCCCCcccCCcccChHHHHHhc-------CC-----CCCccHHHHHHHHHHhhc--CCCccCCCCCCc
Q 021362 151 ----VATVLPMDGFHLYLSQLDAMEDPKEAHARR-------GA-----PWTFNPLLLLNCLKNLRN--QGSVYAPSFDHG 212 (313)
Q Consensus 151 ----~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~-------~~-----~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG 212 (313)
-++--||....+. .|||.||+..+...+ +. ..++..+++.++|+.+++ ..+.+..+||+|
T Consensus 76 iar~Gi~RTFQ~~rlF~--~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG 153 (250)
T COG0411 76 IARLGIARTFQITRLFP--GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYG 153 (250)
T ss_pred HHhccceeecccccccC--CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChh
Confidence 2566788865544 599999999874422 11 123445677888999884 456677799999
Q ss_pred CCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCC
Q 021362 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 213 ~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~ 277 (313)
||+|+.||+|++.+|++|++|+|...+.. ++.+.|+++.+. .++|.|||+.++. |++ |+++++|+
T Consensus 154 ~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~ 233 (250)
T COG0411 154 QQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGT 233 (250)
T ss_pred HhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCC
Confidence 99999999999999999999999999888 566666666653 3599999999998 655 99999999
Q ss_pred chHHHHH
Q 021362 278 PPDVAKW 284 (313)
Q Consensus 278 ~~ev~~~ 284 (313)
|+++.++
T Consensus 234 P~eV~~d 240 (250)
T COG0411 234 PEEVRNN 240 (250)
T ss_pred HHHHhcC
Confidence 9998654
No 30
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=6.5e-39 Score=303.91 Aligned_cols=199 Identities=14% Similarity=0.165 Sum_probs=169.0
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCC--ceeecCCCCC------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK--ASSFDSQVKP------ 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~--G~i~~~g~~~------ 148 (313)
.|+++||+|.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ |++ |+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~~~G~i~~~g~~~~~~~~~ 77 (362)
T TIGR03258 5 GIRIDHLRVAYGANT----VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK---AAGLTGRIAIADRDLTHAPPH 77 (362)
T ss_pred EEEEEEEEEEECCeE----EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCEEEEECCEECCCCCHH
Confidence 489999999998766 9999999999999999999999999999999999999 999 9999999653
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
.+.++|+||+...++ ++|++||+.+++..++.+......++.++++.++. ..++++.+|||||||||+||+|++.+
T Consensus 78 ~r~ig~vfQ~~~l~p--~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~ 155 (362)
T TIGR03258 78 KRGLALLFQNYALFP--HLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIE 155 (362)
T ss_pred HCCEEEEECCcccCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 245999999965443 58999999998766555544455678889998884 35678889999999999999999999
Q ss_pred ceEEEEcCCccccCh----hhHHHHHhhccc-----eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 227 HKVVIVDGNYLFLDG----GVWKDVSSMFDE-----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 227 ar~Li~d~~~lllDE----~~~~~l~~l~~~-----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
+++|++|+|+..||. .+++.|+++.++ .++||||++++.. |++ |+++..|+++++..+
T Consensus 156 P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 156 PDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999 455555555432 4799999999977 655 999999999988643
No 31
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-38 Score=303.60 Aligned_cols=200 Identities=16% Similarity=0.151 Sum_probs=167.1
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
|.+|+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 m~~l~i~~l~~~~~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~---p~~G~I~~~g~~i~~~~~~ 73 (369)
T PRK11000 1 MASVTLRNVTKAYGDVV----ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED---ITSGDLFIGEKRMNDVPPA 73 (369)
T ss_pred CCEEEEEEEEEEeCCeE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCHh
Confidence 45799999999998766 9999999999999999999999999999999999999 9999999999653
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
.+.++|++|+...++ .+|+.||+.+.....+.+.....+++.++++.++.. .++++.+|||||||||+||+|++.+
T Consensus 74 ~~~i~~v~Q~~~l~~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~ 151 (369)
T PRK11000 74 ERGVGMVFQSYALYP--HLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAE 151 (369)
T ss_pred HCCEEEEeCCcccCC--CCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 245999999965443 489999999886654444333456778889988843 4667789999999999999999999
Q ss_pred ceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 227 HKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 227 ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+++|++|+|+..||. .+++.|+++.++ .|+||||++++.. |++ |+++..|+++++..
T Consensus 152 P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 152 PSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999 445555655432 4799999999876 555 99999999988754
No 32
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-38 Score=296.00 Aligned_cols=209 Identities=14% Similarity=0.146 Sum_probs=168.1
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcc-cCCCCceeecCCCCCC----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-IWPQKASSFDSQVKPP---- 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~-~~p~~G~i~~~g~~~~---- 149 (313)
|.+|+++||++.|+...+...+|+||||+|++||++||+|+||||||||+++|+|+++. ..|++|+|.++|++..
T Consensus 1 m~~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~ 80 (326)
T PRK11022 1 MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE 80 (326)
T ss_pred CceEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence 56899999999997642223499999999999999999999999999999999999861 0138999999997632
Q ss_pred --------CeEEEEecCCCCCCcccCCcccChHHHHHhc-CCCCCccHHHHHHHHHHhhcC-----CCccCCCCCCcCCC
Q 021362 150 --------DVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVGD 215 (313)
Q Consensus 150 --------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~LSgG~kq 215 (313)
+.++|+||+++...++.+++.+++....... +....+..+++.++|+.++.. .+.++.+|||||+|
T Consensus 81 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~Q 160 (326)
T PRK11022 81 KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ 160 (326)
T ss_pred HHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHH
Confidence 2599999997644455688888877665433 333334556788999999853 25677799999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~e 280 (313)
||+||+|++.++++|++|+++..||. .+++.|+++.++ .+|||||++++.+ |++ |++++.|++++
T Consensus 161 Rv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~ 240 (326)
T PRK11022 161 RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHD 240 (326)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999 466666666542 4799999999876 665 99999999988
Q ss_pred HHH
Q 021362 281 VAK 283 (313)
Q Consensus 281 v~~ 283 (313)
+..
T Consensus 241 ~~~ 243 (326)
T PRK11022 241 IFR 243 (326)
T ss_pred Hhh
Confidence 864
No 33
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-38 Score=274.92 Aligned_cols=200 Identities=16% Similarity=0.174 Sum_probs=170.5
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCC-----
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD----- 150 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~----- 150 (313)
+||+++||+..||... +|++|||++++||+++|+|+||+|||||+|+|+|+.+ +.+|+|.++|++...
T Consensus 2 ~mL~v~~l~~~YG~~~----~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~---~~~G~I~~~G~dit~~p~~~ 74 (237)
T COG0410 2 PMLEVENLSAGYGKIQ----ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR---PRSGRIIFDGEDITGLPPHE 74 (237)
T ss_pred CceeEEeEeeccccee----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeeEEECCeecCCCCHHH
Confidence 5899999999999987 9999999999999999999999999999999999999 999999999988543
Q ss_pred ----eEEEEecCCCCCCcccCCcccChHHHHHhcCC--CCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhc
Q 021362 151 ----VATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 151 ----~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
-++||||....++ .|||.||+..+...... ....+.+.+.+++-++....+++..+|||||||.++||+|++
T Consensus 75 r~r~Gi~~VPegR~iF~--~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm 152 (237)
T COG0410 75 RARLGIAYVPEGRRIFP--RLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALM 152 (237)
T ss_pred HHhCCeEeCcccccchh--hCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHh
Confidence 3899999866555 49999999987654332 222235667788888888889999999999999999999999
Q ss_pred cCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
.++++|++|+|...|-+ ++.+.|+++.++ +++|.++.+.+++ |.+ ||++..|+.+++...
T Consensus 153 ~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 153 SRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred cCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 99999999999999988 666667777653 3699999999998 443 999999999998654
No 34
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=3e-38 Score=298.75 Aligned_cols=198 Identities=14% Similarity=0.169 Sum_probs=165.5
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------CC
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 150 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------~~ 150 (313)
+|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|++. .+
T Consensus 2 ~L~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~~~r 74 (353)
T PRK10851 2 SIEIANIKKSFGRTQ----VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH---QTSGHIRFHGTDVSRLHARDR 74 (353)
T ss_pred EEEEEEEEEEeCCeE----EEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHHC
Confidence 589999999998766 9999999999999999999999999999999999999 9999999999753 24
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHhc----CCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhc
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~----~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
.++|+||+...++ ++|+.||+.++.... +.+.....+++.++++.++. ..++++.+|||||||||+||+|++
T Consensus 75 ~i~~v~Q~~~l~p--~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~ 152 (353)
T PRK10851 75 KVGFVFQHYALFR--HMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALA 152 (353)
T ss_pred CEEEEecCcccCC--CCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHh
Confidence 6999999955443 589999999876532 22223345677888998884 356778899999999999999999
Q ss_pred cCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
.++++|++|+|+..||. .+++.|+++.++ .++||||++++.. |++ |++++.|+++++..
T Consensus 153 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 153 VEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999 445555555432 4799999999987 555 99999999988854
No 35
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=5.8e-38 Score=304.15 Aligned_cols=208 Identities=19% Similarity=0.188 Sum_probs=176.1
Q ss_pred CccEEEEccceEEcccc-------ccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCC
Q 021362 74 EIPVVEARCMDEVYDAL-------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 74 ~m~~l~~~~l~~~y~~~-------~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~ 146 (313)
.-++++++||+|.|... .+.+.+++||||++.+||++||+|+||||||||.|+|+|+++ |++|+|.++|.
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~---P~~G~i~~~g~ 353 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP---PSSGSIIFDGQ 353 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEEeCc
Confidence 34689999999999842 234679999999999999999999999999999999999999 99999999996
Q ss_pred C----------CCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCC-CCccHHHHHHHHHHhhcC---CCccCCCCCCc
Q 021362 147 K----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ---GSVYAPSFDHG 212 (313)
Q Consensus 147 ~----------~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG 212 (313)
+ ..+.+.++|||++...++.+||.+++..++..++.. .....+++.++|+.+++. .++++.+||||
T Consensus 354 ~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGG 433 (539)
T COG1123 354 DLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGG 433 (539)
T ss_pred ccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcc
Confidence 5 124689999999998888999999999988765433 344456788999999943 56788899999
Q ss_pred CCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCC
Q 021362 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 213 ~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~ 277 (313)
||||++||+|++.++++|+.|+++.-||. .+.+.|.++.++ .+|||||++.+.+ |++ |++++.|+
T Consensus 434 QrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~ 513 (539)
T COG1123 434 QRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGP 513 (539)
T ss_pred hhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCC
Confidence 99999999999999999999999999999 455555555544 3799999999998 666 99999997
Q ss_pred chHHHHH
Q 021362 278 PPDVAKW 284 (313)
Q Consensus 278 ~~ev~~~ 284 (313)
.+++...
T Consensus 514 ~~~v~~~ 520 (539)
T COG1123 514 TEKVFEN 520 (539)
T ss_pred HHHHhcC
Confidence 7777543
No 36
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-38 Score=286.41 Aligned_cols=208 Identities=16% Similarity=0.163 Sum_probs=173.7
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcc--cCCCCceeecCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVK------- 147 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~--~~p~~G~i~~~g~~------- 147 (313)
+|+++||+..|....+.+.+++||||+|++||++||+|.|||||||+.+.|+|+++. ..-.+|+|.++|++
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 478999999998755556699999999999999999999999999999999999951 11256899999975
Q ss_pred -----CCCeEEEEecCCCCCCcccCCcccChHHHHHhcC-C-CCCccHHHHHHHHHHhhcC-----CCccCCCCCCcCCC
Q 021362 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-A-PWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVGD 215 (313)
Q Consensus 148 -----~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~-~-~~~~~~~~~~~~l~~l~~~-----~~~~~~~LSgG~kq 215 (313)
+.+.|+++|||+....++.+++.+.+......+. . .+++..+++.++|+.++.. .+.|+.+|||||+|
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 3457999999998888888999998888776543 2 3455677889999999943 25677799999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~e 280 (313)
||.||+|++.++++||.|+|+.-||- ++++.|+++.++ .+|||||+..+.+ ||+ |++|+.|++++
T Consensus 161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~ 240 (316)
T COG0444 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEE 240 (316)
T ss_pred HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHH
Confidence 99999999999999999999999999 555555555542 3799999999998 666 99999999999
Q ss_pred HHHH
Q 021362 281 VAKW 284 (313)
Q Consensus 281 v~~~ 284 (313)
+..+
T Consensus 241 i~~~ 244 (316)
T COG0444 241 IFKN 244 (316)
T ss_pred HhcC
Confidence 8764
No 37
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=4.8e-38 Score=292.15 Aligned_cols=199 Identities=18% Similarity=0.170 Sum_probs=164.7
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------C
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------P 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------~ 149 (313)
+|+++|+++.|++.. +|+++||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 4 ~i~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 76 (303)
T TIGR01288 4 AIDLVGVSKSYGDKV----VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS---PDRGKITVLGEPVPSRARLAR 76 (303)
T ss_pred EEEEEeEEEEeCCeE----EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECcccHHHHh
Confidence 699999999998766 9999999999999999999999999999999999999 9999999998653 3
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCc
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~a 227 (313)
+.++|++|++..++ .+|+.||+.+....++.......+++.++++.++. ..++++.+||||||||++||++++.++
T Consensus 77 ~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 154 (303)
T TIGR01288 77 VAIGVVPQFDNLDP--EFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDP 154 (303)
T ss_pred hcEEEEeccccCCc--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 46999999965433 48999999875544443322233456778888874 346677899999999999999999999
Q ss_pred eEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 228 KVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 228 r~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
++|++|+|+..||. .+++.|+++.++ .+++|||++++.. |++ |+++..|+++++...
T Consensus 155 ~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 155 QLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999 566666666432 4699999999876 555 999999999888654
No 38
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-38 Score=293.56 Aligned_cols=206 Identities=16% Similarity=0.143 Sum_probs=168.2
Q ss_pred ccEEEEccceEEccccc------cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC
Q 021362 75 IPVVEARCMDEVYDALA------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~------~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~ 148 (313)
+++|+++||++.|+... +.+.+|+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~---p~~G~i~~~g~~l 79 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET---PTGGELYYQGQDL 79 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC---CCCcEEEECCEEc
Confidence 45899999999996321 12349999999999999999999999999999999999999 9999999999653
Q ss_pred -----------CCeEEEEecCCCCCCcccCCcccChHHHHHhc-CCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcC
Q 021362 149 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV 213 (313)
Q Consensus 149 -----------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~ 213 (313)
.+.++|+||+++...++.+++.+++.+..... +.......+++.++++.++.. .+.++.+|||||
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq 159 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQ 159 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHH
Confidence 23599999997544455689999987765443 333334456788999998853 366788999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCc
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKP 278 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~ 278 (313)
+||++||+|++.++++|++|+++..||. .+++.|.++.++ .+|||||++++.. |++ |++++.|++
T Consensus 160 ~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~ 239 (327)
T PRK11308 160 RQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTK 239 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999 455566655432 4799999999986 655 999999999
Q ss_pred hHHHH
Q 021362 279 PDVAK 283 (313)
Q Consensus 279 ~ev~~ 283 (313)
+++..
T Consensus 240 ~~~~~ 244 (327)
T PRK11308 240 EQIFN 244 (327)
T ss_pred HHHhc
Confidence 88865
No 39
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.8e-38 Score=264.91 Aligned_cols=198 Identities=15% Similarity=0.175 Sum_probs=165.2
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC---Ce
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---DV 151 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~---~~ 151 (313)
|.++.+++++.+|+++. ..+|+|+|++|.+||+++++||||||||||+|+++|+.. |+.|+|.++|+.+. ..
T Consensus 1 M~~l~~~~~sl~y~g~~--~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~---P~~G~i~l~~r~i~gPgae 75 (259)
T COG4525 1 MCMLNVSHLSLSYEGKP--RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT---PSRGSIQLNGRRIEGPGAE 75 (259)
T ss_pred CceeehhheEEecCCcc--hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC---cccceEEECCEeccCCCcc
Confidence 56789999999998754 448999999999999999999999999999999999999 99999999997532 34
Q ss_pred EEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccCceE
Q 021362 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~ar~ 229 (313)
-|+|||++-.++ ++++.+|++|++...|.++....+.+.+.+..+| ...++++-+|||||||||.||+|++.+++.
T Consensus 76 rgvVFQ~~~LlP--Wl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~ 153 (259)
T COG4525 76 RGVVFQNEALLP--WLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQL 153 (259)
T ss_pred ceeEeccCccch--hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcce
Confidence 578999977665 6999999999999999998888888999999998 445677789999999999998888777777
Q ss_pred EEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh------hcccccCCch
Q 021362 230 VIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL------KRHISTGKPP 279 (313)
Q Consensus 230 Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~------griv~~G~~~ 279 (313)
|++|+|+--+|- ++.+.+.++... .++||||++++.- |++ ||+++.-+++
T Consensus 154 LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 154 LLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred EeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 777777777776 444445554432 4799999999987 555 7888765554
No 40
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=6.7e-38 Score=294.07 Aligned_cols=206 Identities=16% Similarity=0.114 Sum_probs=166.9
Q ss_pred ccEEEEccceEEccccc---------cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCC
Q 021362 75 IPVVEARCMDEVYDALA---------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~---------~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g 145 (313)
.++|+++||++.|+... ....+|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~---p~~G~I~~~G 82 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK---ATDGEVAWLG 82 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCCcEEEECC
Confidence 35899999999996421 12459999999999999999999999999999999999999 9999999999
Q ss_pred CCC-----------CCeEEEEecCCCCCCcccCCcccChHHHHHhc--CCCCCccHHHHHHHHHHhhcC---CCccCCCC
Q 021362 146 VKP-----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSF 209 (313)
Q Consensus 146 ~~~-----------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~---~~~~~~~L 209 (313)
.+. .+.++|++|+++....+.+|+.+|+.+....+ +.......+++.++++.++.. .++++.+|
T Consensus 83 ~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~L 162 (331)
T PRK15079 83 KDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEF 162 (331)
T ss_pred EECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccC
Confidence 763 23599999997422334589999998876543 233333455677889988852 46777899
Q ss_pred CCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccc
Q 021362 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHIS 274 (313)
Q Consensus 210 SgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~ 274 (313)
||||+||++||+|++.++++|++|+|+..||. .+++.|+++.+ ..+|||||++++.. |++ |++++
T Consensus 163 SgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive 242 (331)
T PRK15079 163 SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVE 242 (331)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999 45555655543 24799999999986 555 99999
Q ss_pred cCCchHHHH
Q 021362 275 TGKPPDVAK 283 (313)
Q Consensus 275 ~G~~~ev~~ 283 (313)
.|+++++..
T Consensus 243 ~g~~~~i~~ 251 (331)
T PRK15079 243 LGTYDEVYH 251 (331)
T ss_pred EcCHHHHHc
Confidence 999888764
No 41
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=5.9e-38 Score=300.39 Aligned_cols=199 Identities=18% Similarity=0.206 Sum_probs=166.4
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
|++|+++||++.|++.. +|+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 1 ~~~L~~~nls~~y~~~~----vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~---p~sG~I~l~G~~i~~~~~~ 73 (402)
T PRK09536 1 MPMIDVSDLSVEFGDTT----VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT---PTAGTVLVAGDDVEALSAR 73 (402)
T ss_pred CceEEEeeEEEEECCEE----EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEEcCcCCHH
Confidence 45899999999998776 9999999999999999999999999999999999999 9999999999653
Q ss_pred --CCeEEEEecCCCCCCcccCCcccChHHHHHhc----CCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhh
Q 021362 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 149 --~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~----~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia 220 (313)
.+.++|++|+...++ .+|+.||+.+....+ +.....+.+++.++++.++. ..++++.+||||||||++||
T Consensus 74 ~~~~~ig~v~q~~~l~~--~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IA 151 (402)
T PRK09536 74 AASRRVASVPQDTSLSF--EFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLA 151 (402)
T ss_pred HHhcceEEEccCCCCCC--CCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 245999999965444 489999998754321 11123455678889999884 34667889999999999999
Q ss_pred hhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 221 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 221 ~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
+++++++++|++|+|+..||. ++++.|+++.++ .+++|||++++.+ |++ |++++.|+++++.
T Consensus 152 rAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 152 RALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999 566666666532 3799999999977 655 9999999999874
No 42
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-38 Score=265.23 Aligned_cols=200 Identities=17% Similarity=0.180 Sum_probs=173.6
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
++.|+++|+.|.||... +|++||++-++|+++.|+|.|||||||++|||+=+.+ |+.|.|.++|..+
T Consensus 4 ~~~l~v~dlHK~~G~~e----VLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~---P~~G~I~v~geei~~k~~~ 76 (256)
T COG4598 4 ENALEVEDLHKRYGEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSAGSIRVNGEEIRLKRDK 76 (256)
T ss_pred ccceehhHHHhhcccch----hhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC---CCCceEEECCeEEEeeeCC
Confidence 34699999999999988 9999999999999999999999999999999999999 9999999999651
Q ss_pred ---------------CCeEEEEecCCCCCCcccCCcccChHHHH-HhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCC
Q 021362 149 ---------------PDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFD 210 (313)
Q Consensus 149 ---------------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LS 210 (313)
+.+.++|||. |+++. +||+.||+.... ...|.++.+..++++.+|.++|. ..+.|+..||
T Consensus 77 ~G~l~~ad~~q~~r~Rs~L~mVFQ~-FNLWs-HmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LS 154 (256)
T COG4598 77 DGQLKPADKRQLQRLRTRLGMVFQH-FNLWS-HMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLS 154 (256)
T ss_pred CCCeeeCCHHHHHHHHHHhhHhhhh-cchhH-HHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccC
Confidence 1237899999 55554 699999988753 45678888888999999999994 4556777999
Q ss_pred CcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccce---EEEEcChHHHHH---HHh----hcccccC
Q 021362 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEK---WFIEVDLDTAMQ---RVL----KRHISTG 276 (313)
Q Consensus 211 gG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~~---i~vtHd~~~~~~---rv~----griv~~G 276 (313)
|||+||++||+|++..+.++++|+|+.-||+ ++++.++++..++ ++|||.|.++.. .++ |.+-+.|
T Consensus 155 GGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G 234 (256)
T COG4598 155 GGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEG 234 (256)
T ss_pred chHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccC
Confidence 9999999999999999999999999999999 6677777777664 799999999988 555 8888999
Q ss_pred CchHHHH
Q 021362 277 KPPDVAK 283 (313)
Q Consensus 277 ~~~ev~~ 283 (313)
+|+++..
T Consensus 235 ~P~qvf~ 241 (256)
T COG4598 235 PPEQVFG 241 (256)
T ss_pred ChHHHhc
Confidence 9999854
No 43
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2e-37 Score=257.38 Aligned_cols=193 Identities=19% Similarity=0.142 Sum_probs=164.7
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC---------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------- 147 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~--------- 147 (313)
+|++++++|..+.....+.+|++|+|.|++||-++|+||||||||||+-+++|+.. |++|+|++.|++
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~---~ssGeV~l~G~~L~~ldEd~r 82 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD---PSSGEVRLLGQPLHKLDEDAR 82 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC---CCCceEEEcCcchhhcCHHHH
Confidence 79999999999988888889999999999999999999999999999999999999 999999999976
Q ss_pred ---CCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCC--CccCCCCCCcCCCcchhhhh
Q 021362 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 148 ---~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~LSgG~kqRv~ia~a 222 (313)
+.+++|+|||. |++.+ .||..||+..++...|.........+.++|+++|... ..++.+|||||+|||+||+|
T Consensus 83 A~~R~~~vGfVFQS-F~Lip-~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARA 160 (228)
T COG4181 83 AALRARHVGFVFQS-FHLIP-NLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARA 160 (228)
T ss_pred HHhhccceeEEEEe-eeccc-cchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHH
Confidence 34579999999 55443 5999999999999988666666677899999999554 44666999999999999999
Q ss_pred hccCceEEEEcCCccccChh----hHHHHHhhccc----eEEEEcChHHHHH--HHh----hcccc
Q 021362 223 VGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDE----KWFIEVDLDTAMQ--RVL----KRHIS 274 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE~----~~~~l~~l~~~----~i~vtHd~~~~~~--rv~----griv~ 274 (313)
++..+++|+.|+|+--||-. +.+.+-.+..+ -++||||..++.+ |.+ |++++
T Consensus 161 fa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 161 FAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred hcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 99999999999999999984 44444444333 3799999999988 555 77654
No 44
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.7e-38 Score=277.38 Aligned_cols=194 Identities=19% Similarity=0.206 Sum_probs=158.7
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------CC
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PD 150 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------~~ 150 (313)
|+++|+++.|++.. +|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+. .+
T Consensus 1 i~~~~~~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (220)
T cd03265 1 IEVENLVKKYGDFE----AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK---PTSGRATVAGHDVVREPREVRR 73 (220)
T ss_pred CEEEEEEEEECCEE----eeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecCcChHHHhh
Confidence 57899999998766 9999999999999999999999999999999999999 9999999998653 23
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCce
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar 228 (313)
.++|++|++..+. .+|+.+|+.+....++.......+++.++++.++.. .+.++.+||||||||++||++++.+++
T Consensus 74 ~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~ 151 (220)
T cd03265 74 RIGIVFQDLSVDD--ELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPE 151 (220)
T ss_pred cEEEecCCccccc--cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 5899999965433 489999998876554443333445678888888843 466777999999999999999999999
Q ss_pred EEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchH
Q 021362 229 VVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 229 ~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~e 280 (313)
+|++|+|+..||. .+++.|.++.++ .+++|||++++.. |++ |+++..|++++
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 152 VLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred EEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 9999999999999 455555555432 4799999999876 554 88887777655
No 45
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-37 Score=294.26 Aligned_cols=202 Identities=16% Similarity=0.166 Sum_probs=164.7
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
||+++||++.|+.......+|+|+||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~---p~~G~I~~~g~~i~~~~~~~~ 77 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER---PTSGRVLVDGQDLTALSEKEL 77 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHH
Confidence 48999999999721111239999999999999999999999999999999999999 9999999999653
Q ss_pred ---CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhh
Q 021362 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al 223 (313)
.+.++|++|++..++ .+|+.||+.+....++.+.....+++.++++.++.. .++++.+||||||||++||+++
T Consensus 78 ~~~~~~ig~v~q~~~l~~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL 155 (343)
T PRK11153 78 RKARRQIGMIFQHFNLLS--SRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARAL 155 (343)
T ss_pred HHHhcCEEEEeCCCccCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 245999999965443 489999999876655544333445678888888843 4567779999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+.++++|++|+|+..||. .+++.|+++.+ ..+++|||++++.. |++ |++++.|+++++..
T Consensus 156 ~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 156 ASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999 56666666643 24699999999876 555 89999998887753
No 46
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.9e-38 Score=272.39 Aligned_cols=199 Identities=17% Similarity=0.170 Sum_probs=178.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC----CCeE
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----PDVA 152 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~----~~~i 152 (313)
+|++++|+|+||++. +++|+||++++|++.|++|||||||||++|+|.|++. |++|+|.|+|.+. ..+|
T Consensus 2 ~L~ie~vtK~Fg~k~----av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle---~~~G~I~~~g~~~~~~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFGDKK----AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE---PTEGEITWNGGPLSQEIKNRI 74 (300)
T ss_pred ceEEecchhccCcee----eecceeeeecCCeEEEeecCCCCCccchHHHHhccCC---ccCceEEEcCcchhhhhhhhc
Confidence 589999999999998 9999999999999999999999999999999999999 9999999999774 4579
Q ss_pred EEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccCceEE
Q 021362 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 153 ~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~ar~L 230 (313)
||+|.+...++. +||.|.+.|.+...|++.++...++..+|++++ ....+++.+||.|++|++.+..++++.+.++
T Consensus 75 GyLPEERGLy~k--~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLl 152 (300)
T COG4152 75 GYLPEERGLYPK--MTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELL 152 (300)
T ss_pred ccChhhhccCcc--CcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEE
Confidence 999999765554 999999999999999999999999999999999 4566788899999999999999999999999
Q ss_pred EEcCCccccChh----hHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 231 IVDGNYLFLDGG----VWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 231 i~d~~~lllDE~----~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
|+|+|+..||+- +.+.|.++.++ +||.||.|+.+.+ +++ |+.|.+|+..++.+.
T Consensus 153 ILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~ 220 (300)
T COG4152 153 ILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRS 220 (300)
T ss_pred EecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHh
Confidence 999999999993 34444455544 4799999999988 666 999999999998764
No 47
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-37 Score=279.04 Aligned_cols=196 Identities=18% Similarity=0.235 Sum_probs=159.1
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 148 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--------- 148 (313)
|+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~ 73 (235)
T cd03261 1 IELRGLTKSFGGRT----VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR---PDSGEVLIDGEDISGLSEAELY 73 (235)
T ss_pred CeEEEEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccChhhHH
Confidence 46899999998766 9999999999999999999999999999999999999 9999999998642
Q ss_pred --CCeEEEEecCCCCCCcccCCcccChHHHHHhc-CCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhh
Q 021362 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 --~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al 223 (313)
.+.++|++|++..++ .+|+.+|+.+....+ +.......+++.++++.++.. .++++.+||||||||++||+++
T Consensus 74 ~~~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al 151 (235)
T cd03261 74 RLRRRMGMLFQSGALFD--SLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARAL 151 (235)
T ss_pred HHhcceEEEccCcccCC--CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 235899999965443 489999998864432 222222345677888888743 4667779999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
+.++++|++|+|+..||. .+++.|+++.. ..+++|||++++.. |++ |++++.|+++++.
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 152 ALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 999999999999999999 55566666543 24799999998876 554 8888888877764
No 48
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-37 Score=290.61 Aligned_cols=209 Identities=11% Similarity=0.140 Sum_probs=164.5
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc-CCCCceeecCCCCC-----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKASSFDSQVKP----- 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~-~p~~G~i~~~g~~~----- 148 (313)
|++|+++||++.|+...+...+|+|+||+|++||++||+|+||||||||+++|+|+++.. .|++|+|.++|++.
T Consensus 1 ~~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~ 80 (330)
T PRK15093 1 MPLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred CCeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence 568999999999953222234999999999999999999999999999999999998510 14899999999653
Q ss_pred -------CCeEEEEecCCCCCCcccCCcccChHHHHHhc---CC--CC-CccHHHHHHHHHHhhcCC-----CccCCCCC
Q 021362 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR---GA--PW-TFNPLLLLNCLKNLRNQG-----SVYAPSFD 210 (313)
Q Consensus 149 -------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~---~~--~~-~~~~~~~~~~l~~l~~~~-----~~~~~~LS 210 (313)
.+.++|+||++....++.+|+.+++.+..... +. .. .+..+++.++|+.++... +.++.+||
T Consensus 81 ~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LS 160 (330)
T PRK15093 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT 160 (330)
T ss_pred HHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCC
Confidence 13599999997654455689999987643221 10 01 123456788999988542 46777999
Q ss_pred CcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hccccc
Q 021362 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHIST 275 (313)
Q Consensus 211 gG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~ 275 (313)
|||+|||+||+|++.++++|++|+|+..||. .+++.|+++.++ .||||||++++.. |++ |++++.
T Consensus 161 gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~ 240 (330)
T PRK15093 161 EGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVET 240 (330)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999 556666665442 4799999999987 555 999999
Q ss_pred CCchHHHH
Q 021362 276 GKPPDVAK 283 (313)
Q Consensus 276 G~~~ev~~ 283 (313)
|+++++..
T Consensus 241 g~~~~i~~ 248 (330)
T PRK15093 241 APSKELVT 248 (330)
T ss_pred CCHHHHHh
Confidence 99888754
No 49
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=2.6e-37 Score=290.09 Aligned_cols=208 Identities=15% Similarity=0.154 Sum_probs=167.0
Q ss_pred CCccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC---CceeecCCCCC-
Q 021362 73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASSFDSQVKP- 148 (313)
Q Consensus 73 ~~m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~---~G~i~~~g~~~- 148 (313)
..+++|+++||++.|+...+...+|+||||+|++||++||+|+||||||||+++|+|+++ |+ +|+|.++|.+.
T Consensus 8 ~~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~---p~~~~sG~I~~~G~~i~ 84 (330)
T PRK09473 8 QADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA---ANGRIGGSATFNGREIL 84 (330)
T ss_pred CCCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCCCCeEEEECCEECC
Confidence 345689999999999643223349999999999999999999999999999999999998 85 99999999763
Q ss_pred -----------CCeEEEEecCCCCCCcccCCcccChHHHHHhcC-CCCCccHHHHHHHHHHhhcCC-----CccCCCCCC
Q 021362 149 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQG-----SVYAPSFDH 211 (313)
Q Consensus 149 -----------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~-----~~~~~~LSg 211 (313)
.+.++|+||+++...++.+++.+++.+....++ .......+++.++|+.++... +.++.+|||
T Consensus 85 ~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSg 164 (330)
T PRK09473 85 NLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSG 164 (330)
T ss_pred cCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCH
Confidence 136999999975444556899999877654432 222333456788888887432 446779999
Q ss_pred cCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccC
Q 021362 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTG 276 (313)
Q Consensus 212 G~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G 276 (313)
||+|||+||+|++.++++|++|+++..||. .+++.|+++.++ .+|||||++++.. |++ |++++.|
T Consensus 165 G~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g 244 (330)
T PRK09473 165 GMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYG 244 (330)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999 455555555432 4799999999876 555 9999999
Q ss_pred CchHHHH
Q 021362 277 KPPDVAK 283 (313)
Q Consensus 277 ~~~ev~~ 283 (313)
+++++..
T Consensus 245 ~~~~i~~ 251 (330)
T PRK09473 245 NARDVFY 251 (330)
T ss_pred CHHHHHh
Confidence 9988865
No 50
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=2.2e-37 Score=287.48 Aligned_cols=199 Identities=15% Similarity=0.111 Sum_probs=168.2
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------C
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------P 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------~ 149 (313)
+++++|++|.|++.. +|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 2 ~l~~~~l~~~~~~~~----~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~---~~~G~i~i~g~~~~~~~~~~~ 74 (301)
T TIGR03522 2 SIRVSSLTKLYGTQN----ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP---PDSGSVQVCGEDVLQNPKEVQ 74 (301)
T ss_pred EEEEEEEEEEECCEE----EEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccChHHHH
Confidence 589999999998766 9999999999999999999999999999999999999 9999999999653 2
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCc
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~a 227 (313)
+.++|++|++..++ .+|+.||+.+....++.+.....+++.++++.++.. .++++..||+|||||++||+|++.++
T Consensus 75 ~~ig~~~q~~~l~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p 152 (301)
T TIGR03522 75 RNIGYLPEHNPLYL--DMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDP 152 (301)
T ss_pred hceEEecCCCCCCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 35999999965433 489999999877666654444456678888888843 46778899999999999999999999
Q ss_pred eEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 228 KVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 228 r~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
++|++|+|+..||. .+++.|+++.+. .+++||+++++.. |++ |++++.|+++++...
T Consensus 153 ~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 153 KVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 99999999999999 566666666432 4799999999887 555 999999999988654
No 51
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-37 Score=284.95 Aligned_cols=203 Identities=14% Similarity=0.140 Sum_probs=164.8
Q ss_pred EEEEccceEEcccccc-ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~-~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
.|+++||++.|+.... ...+|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|+++|.+..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK---PTSGKIIIDGVDITDKKVKL 78 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCccEEEECCEECCCcCccH
Confidence 4899999999975211 1239999999999999999999999999999999999999 99999999996532
Q ss_pred ----CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC----CCccCCCCCCcCCCcchhhh
Q 021362 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 150 ----~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~LSgG~kqRv~ia~ 221 (313)
..++|+||++..... ..|+++|+.+.....+.......+++.++++.++.. .+.++.+|||||+||++||+
T Consensus 79 ~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAr 157 (287)
T PRK13637 79 SDIRKKVGLVFQYPEYQLF-EETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAG 157 (287)
T ss_pred HHHhhceEEEecCchhccc-cccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHH
Confidence 358999998632221 369999999876555544444455678889988853 46677899999999999999
Q ss_pred hhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
|++.++++|++|+|+..||. .+++.|+++.++ ++++|||++++.. |++ |++++.|+++++..
T Consensus 158 aL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 158 VVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred HHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999 566666666432 4799999999876 655 99999999988754
No 52
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.9e-37 Score=259.95 Aligned_cols=197 Identities=16% Similarity=0.137 Sum_probs=162.7
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------CC
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 150 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------~~ 150 (313)
||.++++.+.|+..+ -..+++|+.||+++|+||||||||||+++|+|+.. |.+|+|+++|++. .+
T Consensus 1 ~l~L~~V~~~y~~~~------~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~---P~~G~i~i~g~d~t~~~P~~R 71 (231)
T COG3840 1 MLALDDVRFSYGHLP------MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET---PASGEILINGVDHTASPPAER 71 (231)
T ss_pred CccccceEEeeCcce------EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccC---CCCceEEEcCeecCcCCcccC
Confidence 467899999998754 45788999999999999999999999999999999 9999999999872 34
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccCce
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~ar 228 (313)
-++++||+...+. ++||.+|+.++..-.-.-.+.+++++..++.++| ...++.+.+|||||||||++|++++++-.
T Consensus 72 PVSmlFQEnNLFa--HLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~P 149 (231)
T COG3840 72 PVSMLFQENNLFA--HLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQP 149 (231)
T ss_pred Chhhhhhccccch--hhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCC
Confidence 5899999965444 6999999988643211123567888999999999 45667778999999999999999999999
Q ss_pred EEEEcCCccccChh----hHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 229 VVIVDGNYLFLDGG----VWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 229 ~Li~d~~~lllDE~----~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
+|++|+|+.-||+. .+..+.+++++ .+||||.++.+.+ |++ ||+.+.|..+++...
T Consensus 150 ilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 150 ILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred eEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 99999999999994 44455555544 3699999999988 665 999999998887643
No 53
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-37 Score=286.62 Aligned_cols=202 Identities=12% Similarity=0.117 Sum_probs=165.0
Q ss_pred EEEEccceEEcccccc-ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~-~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
+|+++|+++.|++... ...+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.+.
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~~~~~~~~~ 78 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL---PDTGTIEWIFKDEKNKKKTK 78 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEEeceecccccccc
Confidence 5899999999975311 1238999999999999999999999999999999999999 9999999986432
Q ss_pred -------------------------CCeEEEEecCCC-CCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC-
Q 021362 149 -------------------------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ- 201 (313)
Q Consensus 149 -------------------------~~~i~~v~qd~~-~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~- 201 (313)
.+.++|+||++. .++. .|+.||+.++....+.+.....+++.++++.++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~ 156 (305)
T PRK13651 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFE--QTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDE 156 (305)
T ss_pred cccccccccccccccccccchHHHHHhceEEEeeCccccccc--ccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh
Confidence 234899999852 3332 69999999876665655445556788899998853
Q ss_pred --CCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh
Q 021362 202 --GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL 269 (313)
Q Consensus 202 --~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~ 269 (313)
.++++.+||||||||++||++++.++++|++|+|+..||. .+++.|+++.+. +|++|||++.+.. |++
T Consensus 157 ~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~ 236 (305)
T PRK13651 157 SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTI 236 (305)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEE
Confidence 4667779999999999999999999999999999999999 455666655432 4799999998876 665
Q ss_pred ----hcccccCCchHHHH
Q 021362 270 ----KRHISTGKPPDVAK 283 (313)
Q Consensus 270 ----griv~~G~~~ev~~ 283 (313)
|++++.|+++++..
T Consensus 237 vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 237 FFKDGKIIKDGDTYDILS 254 (305)
T ss_pred EEECCEEEEECCHHHHhc
Confidence 99999999988754
No 54
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=3.1e-37 Score=273.62 Aligned_cols=195 Identities=18% Similarity=0.194 Sum_probs=158.3
Q ss_pred EEEccceEEccc--cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 78 VEARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 78 l~~~~l~~~y~~--~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
|+++|+++.|++ .. +|+|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (220)
T cd03263 1 LQIRNLTKTYKKGTKP----AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR---PTSGTAYINGYSIRTDRKAA 73 (220)
T ss_pred CEEEeeEEEeCCCCce----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccchHHH
Confidence 578999999976 44 9999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
.+.++|++|++..+. .+|+.+|+.+....++.+.....+++.++++.++. ..+.++.+||+||+||++||++++.+
T Consensus 74 ~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (220)
T cd03263 74 RQSLGYCPQFDALFD--ELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGG 151 (220)
T ss_pred hhhEEEecCcCCccc--cCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcC
Confidence 235899999965433 48999999887655543333334567788888874 34567779999999999999999999
Q ss_pred ceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HHh----hcccccCCchHH
Q 021362 227 HKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 227 ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv~----griv~~G~~~ev 281 (313)
+++|++|+|+..||. .+++.|+++.+. .+++|||++.+.. +++ |++++.|+++++
T Consensus 152 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 152 PSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 999999999999999 455555555442 4799999999876 444 888888877653
No 55
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-37 Score=275.88 Aligned_cols=201 Identities=17% Similarity=0.169 Sum_probs=160.8
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
||+++|+++.|++..+...+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER---PTSGSVLVDGTDLTLLSGKEL 77 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHHHH
Confidence 48899999999865101129999999999999999999999999999999999999 9999999999753
Q ss_pred ---CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhh
Q 021362 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al 223 (313)
.+.++|++|++..++ .+|+.||+.+....++.......+.+.++++.++.. .+..+.+|||||+||++||+++
T Consensus 78 ~~~~~~i~~~~q~~~~~~--~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 155 (233)
T cd03258 78 RKARRRIGMIFQHFNLLS--SRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARAL 155 (233)
T ss_pred HHHHhheEEEccCcccCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 235899999965443 489999998765444332222345677888888743 4567779999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
+.++++|++|+|+..||. .+++.|.++.+ ..+++|||++++.. +++ |++++.|+++++.
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 156 ANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred hcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999 45566666543 24799999999866 544 8888888876653
No 56
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.3e-37 Score=292.94 Aligned_cols=190 Identities=16% Similarity=0.188 Sum_probs=159.6
Q ss_pred EEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------------CCeE
Q 021362 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------------PDVA 152 (313)
Q Consensus 85 ~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------------~~~i 152 (313)
|.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.+
T Consensus 1 ~~~~~~~----~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~---p~~G~I~i~G~~i~~~~~~~~~~~rr~~i 73 (363)
T TIGR01186 1 KKTGGKK----GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE---PTAGQIFIDGENIMKQSPVELREVRRKKI 73 (363)
T ss_pred CccCCce----eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHHHHHHhCcE
Confidence 4677666 9999999999999999999999999999999999999 9999999999653 3469
Q ss_pred EEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEE
Q 021362 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 153 ~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~L 230 (313)
+|++|+...++ ++|+.||+.+.....+.+.....+++.++++.++. ..++++.+|||||||||+||+|++.++++|
T Consensus 74 ~~v~Q~~~l~~--~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iL 151 (363)
T TIGR01186 74 GMVFQQFALFP--HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDIL 151 (363)
T ss_pred EEEECCCcCCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999965444 48999999998766665544456678899998884 356677899999999999999999999999
Q ss_pred EEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 231 IVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 231 i~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++|+|+..||. .+.+.+.++.+ ..+|||||++++.. |++ |+++..|+++++..
T Consensus 152 LlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 152 LMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 99999999999 45555555432 24799999999877 655 99999999988754
No 57
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=6.6e-37 Score=276.72 Aligned_cols=200 Identities=15% Similarity=0.185 Sum_probs=160.7
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
|+||+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 m~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~ 73 (250)
T PRK11264 1 MSAIEVKNLVKKFHGQT----VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ---PEAGTIRVGDITIDTARSL 73 (250)
T ss_pred CCcEEEeceEEEECCee----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccccc
Confidence 45799999999998765 9999999999999999999999999999999999999 9999999988542
Q ss_pred ----------CCeEEEEecCCCCCCcccCCcccChHHHHHh-cCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCC
Q 021362 149 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ----------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kq 215 (313)
.+.++|++|++..++ .+|+.||+.+.... .+.......+++.++++.++.. .+.++.+|||||+|
T Consensus 74 ~~~~~~~~~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~q 151 (250)
T PRK11264 74 SQQKGLIRQLRQHVGFVFQNFNLFP--HRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQ 151 (250)
T ss_pred cchhhHHHHhhhhEEEEecCcccCC--CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHH
Confidence 235899999965443 47999999875432 2222222345677888888743 45677799999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev 281 (313)
|++||++++.++++|++|+|+..||. .+++.|.++.+. .|++|||++++.. |++ |++++.|+++++
T Consensus 152 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 231 (250)
T PRK11264 152 RVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKAL 231 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999 445555555432 4699999999865 554 899888988777
Q ss_pred HH
Q 021362 282 AK 283 (313)
Q Consensus 282 ~~ 283 (313)
..
T Consensus 232 ~~ 233 (250)
T PRK11264 232 FA 233 (250)
T ss_pred hc
Confidence 43
No 58
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-37 Score=283.92 Aligned_cols=202 Identities=11% Similarity=0.066 Sum_probs=164.7
Q ss_pred EEEEccceEEcccccc-ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~-~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
.|+++|+++.|++..+ ...+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ---PTSGTVTIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 4899999999974211 1239999999999999999999999999999999999999 99999999997542
Q ss_pred ------CeEEEEecCCC-CCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchh
Q 021362 150 ------DVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 150 ------~~i~~v~qd~~-~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~i 219 (313)
+.++|++|++. .++. .|+.||+.+.....+.+.....+++.++++.++.. .+.++.+|||||+||++|
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~l 156 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQLFE--ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAI 156 (290)
T ss_pred hHHHHHhhEEEEeeCchhhhhh--hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHH
Confidence 35899999853 2332 69999999876555544433445678889998853 356778999999999999
Q ss_pred hhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 220 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 220 a~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
|++++.++++|++|+|+..||. .+++.|+++.+ .+|++|||++++.. |++ |++++.|++.++..
T Consensus 157 AraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 157 AGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999 55666666643 24799999999876 665 99999999888753
No 59
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=5.4e-37 Score=297.38 Aligned_cols=206 Identities=18% Similarity=0.220 Sum_probs=177.1
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC----CceeecCCCC----
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ----KASSFDSQVK---- 147 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~----~G~i~~~g~~---- 147 (313)
++|+++||++.|....+.+.+++||||+|++||++||+|.|||||||+++.|.|+++ +. +|+|.++|++
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~---~~~~~~~G~I~~~g~dl~~l 80 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLP---EGGRITSGEVILDGRDLLGL 80 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCC---CCCcccceEEEECCcchhcC
Confidence 389999999999866444569999999999999999999999999999999999997 55 7999999975
Q ss_pred --------CCCeEEEEecCCCCCCcccCCcccChHHHHHhcC-CCCCccHHHHHHHHHHhhc--CC--CccCCCCCCcCC
Q 021362 148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRN--QG--SVYAPSFDHGVG 214 (313)
Q Consensus 148 --------~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~--~~--~~~~~~LSgG~k 214 (313)
+.+.++|+||+++..+++.+|+.+.+......++ ....+..+++.++|+.++. .. ++++++||||||
T Consensus 81 ~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~r 160 (539)
T COG1123 81 SEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMR 160 (539)
T ss_pred CHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHH
Confidence 3356999999999888888899999888776654 3456677888999999983 22 347779999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCch
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ 279 (313)
|||.||+|++.++++||.|+|+--||. ++++.|+++.++ .+|||||+..+.+ |++ |++++.|+++
T Consensus 161 QRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~ 240 (539)
T COG1123 161 QRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTE 240 (539)
T ss_pred HHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHH
Confidence 999999999999999999999999999 566666666643 3799999999998 766 9999999999
Q ss_pred HHHHH
Q 021362 280 DVAKW 284 (313)
Q Consensus 280 ev~~~ 284 (313)
++...
T Consensus 241 ~i~~~ 245 (539)
T COG1123 241 EILSN 245 (539)
T ss_pred HHHhc
Confidence 99775
No 60
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.9e-37 Score=275.42 Aligned_cols=197 Identities=17% Similarity=0.235 Sum_probs=159.6
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------CC
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 150 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------~~ 150 (313)
+|+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+
T Consensus 2 ~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 74 (239)
T cd03296 2 SIEVRNVSKRFGDFV----ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER---PDSGTILFGGEDATDVPVQER 74 (239)
T ss_pred EEEEEeEEEEECCEE----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccc
Confidence 589999999998765 9999999999999999999999999999999999999 9999999998653 23
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHhcCC----CCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhc
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGA----PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~----~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
.++|++|++..+. .+|+.||+.+.....+. ......+++.++++.++.. .+.++.+||+||+||++||+|++
T Consensus 75 ~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~ 152 (239)
T cd03296 75 NVGFVFQHYALFR--HMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALA 152 (239)
T ss_pred ceEEEecCCcccC--CCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHh
Confidence 5899999965443 47999999876543322 1112234567788888743 45667799999999999999999
Q ss_pred cCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
.++++|++|+|+..||. .+++.|.++.+ ..|++|||++++.. |++ |++++.|+++++.
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 153 VEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 99999999999999999 45555665543 24799999998766 554 8988889887764
No 61
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-37 Score=274.53 Aligned_cols=197 Identities=13% Similarity=0.058 Sum_probs=155.5
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
++|+++|+++.|++......+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|++..
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~ 80 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT---PTSGDVIFNGQPMSKLSSAA 80 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCCHHH
Confidence 479999999999752111239999999999999999999999999999999999999 99999999996531
Q ss_pred ------CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhh
Q 021362 150 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 150 ------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~ 221 (313)
+.++|++|++..++ .+|+.+|+.+.....+.......+++.++++.++.. .+..+.+||||||||++||+
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~ 158 (233)
T PRK11629 81 KAELRNQKLGFIYQFHHLLP--DFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIAR 158 (233)
T ss_pred HHHHHhccEEEEecCcccCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHH
Confidence 35899999965433 479999998865433333233345678888888843 35567799999999999999
Q ss_pred hhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH--HHh----hcccccCC
Q 021362 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGK 277 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~--rv~----griv~~G~ 277 (313)
+++.++++|++|+|+..||. .+++.|+++.+ ..|++|||++++.. |++ |++++.|+
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 159 ALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999 55566666532 24799999999876 443 66665443
No 62
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=8e-37 Score=279.39 Aligned_cols=200 Identities=13% Similarity=0.173 Sum_probs=161.5
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
+++|+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 5 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~ 77 (269)
T PRK11831 5 ANLVDMRGVSFTRGNRC----IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA---PDHGEILFDGENIPAMSRS 77 (269)
T ss_pred cceEEEeCeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccChh
Confidence 45899999999998766 9999999999999999999999999999999999999 9999999998643
Q ss_pred -----CCeEEEEecCCCCCCcccCCcccChHHHHHhc-CCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhh
Q 021362 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 149 -----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia 220 (313)
.+.++|++|+...++ .+|+.||+.+..... +........++.++++.++.. .++++.+||||||||++||
T Consensus 78 ~~~~~~~~i~~v~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~la 155 (269)
T PRK11831 78 RLYTVRKRMSMLFQSGALFT--DMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALA 155 (269)
T ss_pred hHHHHhhcEEEEecccccCC--CCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 235899999965433 479999998764332 122222234567788888743 4567779999999999999
Q ss_pred hhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 221 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 221 ~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++++.++++|++|+|+..||. .+++.|+++.+ ..|++|||++++.. |++ |++++.|+++++..
T Consensus 156 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 156 RAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999 45556666543 24799999998876 554 89988998887653
No 63
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-37 Score=271.76 Aligned_cols=180 Identities=16% Similarity=0.184 Sum_probs=147.4
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------CCe
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDV 151 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------~~~ 151 (313)
|+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.
T Consensus 1 l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~ 73 (213)
T cd03259 1 LELKGLSKTYGSVR----ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER---PDSGEILIDGRDVTGVPPERRN 73 (213)
T ss_pred CeeeeeEEEeCCee----eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcCcCchhhcc
Confidence 46899999998765 9999999999999999999999999999999999999 9999999998653 235
Q ss_pred EEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCceE
Q 021362 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar~ 229 (313)
++|++|++..+. .+|+.+|+.+.....+.......+++.++++.++.. .+.++.+||||||||++||++++.++++
T Consensus 74 i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~ 151 (213)
T cd03259 74 IGMVFQDYALFP--HLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSL 151 (213)
T ss_pred EEEEcCchhhcc--CCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 899999965433 479999998765443332223345677888888743 3566779999999999999999999999
Q ss_pred EEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH
Q 021362 230 VIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 230 Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
|++|+|+..||. .+++.|.++.+ ..+++|||++++..
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~ 196 (213)
T cd03259 152 LLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALA 196 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHH
Confidence 999999999999 55666666543 24799999998765
No 64
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=4.5e-37 Score=271.99 Aligned_cols=183 Identities=13% Similarity=0.053 Sum_probs=148.6
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
||+++|+++.|++.. ..+|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 75 (216)
T TIGR00960 1 MIRFEQVSKAYPGGH--QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK---PTRGKIRFNGQDLTRLRGREI 75 (216)
T ss_pred CeEEEEEEEEecCCC--eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEehhhcChhHH
Confidence 489999999996421 128999999999999999999999999999999999999 9999999999653
Q ss_pred ---CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhh
Q 021362 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al 223 (313)
.+.++|++|++..++ .+|+.||+.+.....+.......+++.++++.++. ..++++.+|||||+||++||+++
T Consensus 76 ~~~~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral 153 (216)
T TIGR00960 76 PFLRRHIGMVFQDHRLLS--DRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAI 153 (216)
T ss_pred HHHHHhceEEecCccccc--cccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 135899999965443 47999999887654443322344567888888884 34567779999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
+.++++|++|+|+..||. .+++.|.++.++ .+++|||++++..
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~ 203 (216)
T TIGR00960 154 VHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVET 203 (216)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 999999999999999999 455555555332 4799999998764
No 65
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=4.9e-37 Score=273.73 Aligned_cols=193 Identities=15% Similarity=0.115 Sum_probs=156.7
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh-----cccCCCCceeecCCCCC----
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI-----NKIWPQKASSFDSQVKP---- 148 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~-----~~~~p~~G~i~~~g~~~---- 148 (313)
|+++||++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|++ + |++|+|.++|.+.
T Consensus 1 i~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~---~~~G~i~~~g~~~~~~~ 73 (227)
T cd03260 1 IELRDLNVYYGDKH----ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA---PDEGEVLLDGKDIYDLD 73 (227)
T ss_pred CEEEEEEEEcCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC---CCCeEEEECCEEhhhcc
Confidence 47899999998766 999999999999999999999999999999999999 8 9999999999653
Q ss_pred ------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCC-ccHHHHHHHHHHhhcCC--Ccc--CCCCCCcCCCcc
Q 021362 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQG--SVY--APSFDHGVGDPV 217 (313)
Q Consensus 149 ------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~~--~~~--~~~LSgG~kqRv 217 (313)
.+.++|++|++..+ .+|+.||+.+.....+.... ...+++.++++.++... +.. +.+|||||+||+
T Consensus 74 ~~~~~~~~~i~~~~q~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv 150 (227)
T cd03260 74 VDVLELRRRVGMVFQKPNPF---PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRL 150 (227)
T ss_pred hHHHHHHhhEEEEecCchhc---cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHH
Confidence 23589999996543 37999999886544432221 13456778888887432 344 479999999999
Q ss_pred hhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HHh----hcccccCCchH
Q 021362 218 EDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 218 ~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv~----griv~~G~~~e 280 (313)
+||++++.++++|++|+|+..||. .+++.|+++.++ .|++|||++++.. |++ |++++.|++++
T Consensus 151 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 151 CLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999999 556666666443 5799999998876 554 88888887765
No 66
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=6.3e-37 Score=291.33 Aligned_cols=193 Identities=16% Similarity=0.141 Sum_probs=159.1
Q ss_pred cceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCC----CC---------
Q 021362 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV----KP--------- 148 (313)
Q Consensus 82 ~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~----~~--------- 148 (313)
++.+.|+... +|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|. +.
T Consensus 29 ~~~~~~g~~~----~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~---p~~G~I~idG~~~~~~i~~~~~~~l~ 101 (382)
T TIGR03415 29 EILDETGLVV----GVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP---VSRGSVLVKDGDGSIDVANCDAATLR 101 (382)
T ss_pred HHHHhhCCEE----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEecccccccCCHHHHH
Confidence 4455565555 9999999999999999999999999999999999999 99999999984 21
Q ss_pred ---CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhh
Q 021362 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al 223 (313)
.+.++|+||+...++ ++|+.||+.++....+.+..+...++.++++.++. ..+.++.+||||||||++||+++
T Consensus 102 ~~r~~~i~~vfQ~~~l~p--~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARAL 179 (382)
T TIGR03415 102 RLRTHRVSMVFQKFALMP--WLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAF 179 (382)
T ss_pred HHhcCCEEEEECCCcCCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 136999999965443 48999999988765555544455678889999884 34667779999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+.++++|++|+|+..||. .+++.|.++.+ ..+|+|||++++.+ |++ |++++.|+++++..
T Consensus 180 a~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~ 254 (382)
T TIGR03415 180 AMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVL 254 (382)
T ss_pred hcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 999999999999999999 45555555543 24799999999876 555 99999999988853
No 67
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-36 Score=291.77 Aligned_cols=202 Identities=16% Similarity=0.232 Sum_probs=162.9
Q ss_pred EEEEccceEEcccccc--------------------ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC
Q 021362 77 VVEARCMDEVYDALAQ--------------------RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP 136 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~--------------------~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p 136 (313)
+|+++||+|.||.... ...+|+|+||+|++||+++|+||||||||||+|+|+|+++ |
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~---p 80 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE---P 80 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---C
Confidence 5777777777765421 1127999999999999999999999999999999999999 9
Q ss_pred CCceeecCCCCCC------------CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CC
Q 021362 137 QKASSFDSQVKPP------------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QG 202 (313)
Q Consensus 137 ~~G~i~~~g~~~~------------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~ 202 (313)
++|+|.++|.+.. +.++|++|+...++ ++|+.||+.+.....+.+.....+++.++++.++. ..
T Consensus 81 ~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~--~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~ 158 (400)
T PRK10070 81 TRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMP--HMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYA 158 (400)
T ss_pred CCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhh
Confidence 9999999996531 35999999965443 48999999987665554433445677888998884 34
Q ss_pred CccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh--
Q 021362 203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL-- 269 (313)
Q Consensus 203 ~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~-- 269 (313)
++++.+||||||||++||+|++.++++|++|+|+..||. .+++.|.++.. ..|++|||++++.. |++
T Consensus 159 ~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL 238 (400)
T PRK10070 159 HSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIM 238 (400)
T ss_pred hcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEE
Confidence 667789999999999999999999999999999999999 45556655532 24799999999876 555
Q ss_pred --hcccccCCchHHHH
Q 021362 270 --KRHISTGKPPDVAK 283 (313)
Q Consensus 270 --griv~~G~~~ev~~ 283 (313)
|+++..|+++++..
T Consensus 239 ~~G~i~~~g~~~~l~~ 254 (400)
T PRK10070 239 QNGEVVQVGTPDEILN 254 (400)
T ss_pred ECCEEEecCCHHHHHh
Confidence 89999998888754
No 68
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=4.7e-37 Score=285.38 Aligned_cols=191 Identities=17% Similarity=0.212 Sum_probs=158.7
Q ss_pred EEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------CCeEEEEec
Q 021362 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PDVATVLPM 157 (313)
Q Consensus 85 ~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------~~~i~~v~q 157 (313)
|.|++.. +|+|+||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|.+. .+.++|++|
T Consensus 1 k~y~~~~----~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~~~q 73 (302)
T TIGR01188 1 KVYGDFK----AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR---PTSGTARVAGYDVVREPRKVRRSIGIVPQ 73 (302)
T ss_pred CeeCCee----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCHHHHHhhcEEecC
Confidence 4676655 9999999999999999999999999999999999999 9999999999653 235899999
Q ss_pred CCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEEEEcCC
Q 021362 158 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 235 (313)
Q Consensus 158 d~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~ 235 (313)
+...++ .+|+.||+.+....++.+.....+++.++++.++. ..++++.+||||||||++||+|++.++++|++|+|
T Consensus 74 ~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 151 (302)
T TIGR01188 74 YASVDE--DLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEP 151 (302)
T ss_pred CCCCCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 965433 48999999887665554433344567888998884 34667889999999999999999999999999999
Q ss_pred ccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 236 YLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 236 ~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
+..||. .+++.|+++.++ .+++|||++++.. |++ |+++..|+++++...
T Consensus 152 t~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 152 TTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999 566666666533 4699999999886 554 999999999887654
No 69
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-36 Score=280.87 Aligned_cols=202 Identities=14% Similarity=0.116 Sum_probs=162.8
Q ss_pred EEEEccceEEccccc-cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 77 VVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~-~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
+|+++|+++.|++.. ....+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK---PSSGTITIAGYHITPETGNK 78 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 689999999997421 01239999999999999999999999999999999999999 99999999997531
Q ss_pred ------CeEEEEecCCC-CCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchh
Q 021362 150 ------DVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 150 ------~~i~~v~qd~~-~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~i 219 (313)
..++|++|++. .++ .+|+.||+.+.....+.......+++.++++.++.. .++++.+||||||||++|
T Consensus 79 ~~~~~~~~ig~v~q~~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~l 156 (287)
T PRK13641 79 NLKKLRKKVSLVFQFPEAQLF--ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAI 156 (287)
T ss_pred hHHHHHhceEEEEeChhhhhc--cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHH
Confidence 25899999963 233 279999998765444333333445678888988853 366788999999999999
Q ss_pred hhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 220 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 220 a~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
|++++.++++|++|+|+..||. .+++.|+++.+. .+++|||++++.. |++ |++++.|+++++..
T Consensus 157 aral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 157 AGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999 455666655432 4699999999876 555 89999999888754
No 70
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-37 Score=281.77 Aligned_cols=202 Identities=16% Similarity=0.124 Sum_probs=163.9
Q ss_pred EEEEccceEEcccccc-ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~-~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
||+++|+++.|+.... ...+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.+.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 77 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ---PTEGKVTVGDIVVSSTSKQK 77 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 5899999999974211 1238999999999999999999999999999999999999 9999999999753
Q ss_pred -----CCeEEEEecCCC-CCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchh
Q 021362 149 -----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 149 -----~~~i~~v~qd~~-~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~i 219 (313)
.+.++|++|++. .++. .|+.+|+.+.....+.+......++.++++.++.. .++.+.+||||||||++|
T Consensus 78 ~~~~~~~~ig~v~q~~~~~l~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvai 155 (288)
T PRK13643 78 EIKPVRKKVGVVFQFPESQLFE--ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAI 155 (288)
T ss_pred cHHHHHhhEEEEecCcchhccc--chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHH
Confidence 135899999862 3332 59999999876655554444455678888888852 356777999999999999
Q ss_pred hhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 220 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 220 a~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
|++++.++++|++|+|+..||. .+++.|.++.++ ++++|||++++.. |++ |++++.|+++++..
T Consensus 156 A~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 156 AGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred HHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 9999999999999999999999 455555555432 4799999999876 665 99999999988754
No 71
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.1e-36 Score=272.32 Aligned_cols=196 Identities=19% Similarity=0.228 Sum_probs=158.3
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 148 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--------- 148 (313)
|+++|+++.|++.. +|+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~ 73 (232)
T cd03218 1 LRAENLSKRYGKRK----VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK---PDSGKILLDGQDITKLPMHKRA 73 (232)
T ss_pred CeEEEEEEEeCCEE----eeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccCCHhHHH
Confidence 47899999998766 9999999999999999999999999999999999999 9999999998652
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
...++|++|++..++ .+|+.+|+.+....++........++.++++.++.. .+..+.+||||||||++||++++.+
T Consensus 74 ~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 151 (232)
T cd03218 74 RLGIGYLPQEASIFR--KLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATN 151 (232)
T ss_pred hccEEEecCCccccc--cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 135899999965433 489999998765443332223344667888888743 4567779999999999999999999
Q ss_pred ceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 227 HKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 227 ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
+++|++|+|+..||. .+++.|+++.+. .|++|||++.+.. |++ |+++..|+++++.
T Consensus 152 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 152 PKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 999999999999999 455555555432 4699999998876 554 8888888877664
No 72
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-36 Score=272.20 Aligned_cols=198 Identities=18% Similarity=0.163 Sum_probs=159.3
Q ss_pred EEEccceEEccc-cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 78 l~~~~l~~~y~~-~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
|+++|+++.|++ .. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 73 (241)
T cd03256 1 IEVENLSKTYPNGKK----ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE---PTSGSVLIDGTDINKLKGKAL 73 (241)
T ss_pred CEEeeEEEecCCccE----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEeccccCHhHH
Confidence 468999999986 55 9999999999999999999999999999999999999 99999999996532
Q ss_pred ----CeEEEEecCCCCCCcccCCcccChHHHHHh--------cCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCC
Q 021362 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHAR--------RGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGD 215 (313)
Q Consensus 150 ----~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~--------~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kq 215 (313)
+.++|++|+...++ .+|+.+|+.+.... .+.......+++.++++.++. ..+.++.+|||||||
T Consensus 74 ~~~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 151 (241)
T cd03256 74 RQLRRQIGMIFQQFNLIE--RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQ 151 (241)
T ss_pred HHHHhccEEEcccCcccc--cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHH
Confidence 35899999965443 47999999765321 111112234567788888874 346677899999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~e 280 (313)
|++||++++.++++|++|+|+..||. .+++.|+++.+ ..+++|||++++.. +++ |++++.|++++
T Consensus 152 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (241)
T cd03256 152 RVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAE 231 (241)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHH
Confidence 99999999999999999999999999 55666666642 24799999999885 554 89999998888
Q ss_pred HHHH
Q 021362 281 VAKW 284 (313)
Q Consensus 281 v~~~ 284 (313)
+..+
T Consensus 232 ~~~~ 235 (241)
T cd03256 232 LTDE 235 (241)
T ss_pred hhHH
Confidence 6443
No 73
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.2e-36 Score=272.75 Aligned_cols=196 Identities=20% Similarity=0.178 Sum_probs=158.2
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC--------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-------- 149 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~-------- 149 (313)
|+++|+++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (236)
T cd03219 1 LEVRGLTKRFGGLV----ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR---PTSGSVLFDGEDITGLPPHEIA 73 (236)
T ss_pred CeeeeeEEEECCEE----EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEECCCCCHHHHH
Confidence 46899999998765 9999999999999999999999999999999999999 99999999986532
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCC----------CCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCc
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP----------WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDP 216 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~----------~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqR 216 (313)
..++|++|++..++ .+|+.||+.+.....+.. .....+++.++++.++.. .+.++.+|||||+||
T Consensus 74 ~~~i~~v~q~~~l~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 151 (236)
T cd03219 74 RLGIGRTFQIPRLFP--ELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRR 151 (236)
T ss_pred hcCEEEEeccccccc--CCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHH
Confidence 34899999965433 489999998865433211 112344567888888743 356777999999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
++||++++.++++|++|+|+..||. .+++.|+++.+ ..|++|||++++.. |++ |+++..|+++++.
T Consensus 152 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 152 LEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence 9999999999999999999999999 55666666542 24799999999876 554 8888888877764
No 74
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-36 Score=273.38 Aligned_cols=200 Identities=17% Similarity=0.206 Sum_probs=160.6
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
|.+|+++|+++.|++.. +|+|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~ 73 (241)
T PRK10895 1 MATLTAKNLAKAYKGRR----VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP---RDAGNIIIDDEDISLLPLH 73 (241)
T ss_pred CceEEEeCcEEEeCCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHH
Confidence 45799999999998765 9999999999999999999999999999999999999 9999999999653
Q ss_pred ---CCeEEEEecCCCCCCcccCCcccChHHHHHhcC-CCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhh
Q 021362 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ---~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~a 222 (313)
...++|++|++..+. .+|+.||+.+.....+ ........++.++++.++. ..+..+.+|||||+||++||++
T Consensus 74 ~~~~~~i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 151 (241)
T PRK10895 74 ARARRGIGYLPQEASIFR--RLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARA 151 (241)
T ss_pred HHHHhCeEEeccCCcccc--cCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHH
Confidence 235899999965443 4799999987543221 2222234567788888774 2356777999999999999999
Q ss_pred hccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++.++++|++|+|+..||. .+++.+.++... .+++|||++++.. +++ |++++.|+++++..
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 152 LAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 9999999999999999998 444555555432 4799999988876 544 89988998887743
No 75
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.7e-36 Score=271.99 Aligned_cols=199 Identities=17% Similarity=0.124 Sum_probs=161.3
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
+|+++|+++.|++.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~i~~~~~~~~ 73 (236)
T TIGR03864 1 ALEVAGLSFAYGARR----ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV---AQEGQISVAGHDLRRAPRAAL 73 (236)
T ss_pred CEEEEeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcccCChhhh
Confidence 488999999998765 9999999999999999999999999999999999999 99999999986532
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCc
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~a 227 (313)
+.++|++|++..++ .+|+.+|+.+.....+.......+.+.++++.++.. .+..+.+|||||+||++||++++.++
T Consensus 74 ~~i~~~~q~~~~~~--~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p 151 (236)
T TIGR03864 74 ARLGVVFQQPTLDL--DLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRP 151 (236)
T ss_pred hhEEEeCCCCCCcc--cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 35899999965433 489999998765443332222345677888888743 45677799999999999999999999
Q ss_pred eEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH--HHh----hcccccCCchHHHHH
Q 021362 228 KVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 228 r~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~~ 284 (313)
+++++|+|+..||. .+++.|+++.+ ..+++|||++++.. |++ |++++.|+++++...
T Consensus 152 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 152 ALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999 55566666542 24699999999865 544 888888888777543
No 76
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-36 Score=279.37 Aligned_cols=198 Identities=17% Similarity=0.153 Sum_probs=161.3
Q ss_pred EEEEccceEEcc-ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 77 ~l~~~~l~~~y~-~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
+|+++|+++.|+ +.. +|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 4 ~l~~~~l~~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 76 (274)
T PRK13647 4 IIEVEDLHFRYKDGTK----ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL---PQRGRVKVMGREVNAENEKW 76 (274)
T ss_pred eEEEEEEEEEeCCCCe----eeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEECCCCCHHH
Confidence 799999999996 344 9999999999999999999999999999999999999 99999999996532
Q ss_pred --CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhcc
Q 021362 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 150 --~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~ 225 (313)
..++|++|++..... ..|+.+|+.+.....+.......+++.++++.++. ..++++.+|||||+||++||+|++.
T Consensus 77 ~~~~i~~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~ 155 (274)
T PRK13647 77 VRSKVGLVFQDPDDQVF-SSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAM 155 (274)
T ss_pred HHhhEEEEecChhhhhc-cCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 358999999632222 36999999876554443333334567788888874 3466777999999999999999999
Q ss_pred CceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 226 ~ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
++++|++|+|+..||. .+++.|+++.+ ..+++|||++++.+ |++ |++++.|+++++.
T Consensus 156 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 156 DPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 9999999999999999 55666666643 24799999999876 554 9999999886553
No 77
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.2e-36 Score=268.57 Aligned_cols=190 Identities=14% Similarity=0.110 Sum_probs=152.7
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------CCe
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDV 151 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------~~~ 151 (313)
|+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. ...
T Consensus 1 i~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~v~~~g~~~~~~~~~~~~ 73 (213)
T cd03301 1 VELENVTKRFGNVT----ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE---PTSGRIYIGGRDVTDLPPKDRD 73 (213)
T ss_pred CEEEeeEEEECCee----eeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccce
Confidence 46899999998766 9999999999999999999999999999999999999 9999999998653 235
Q ss_pred EEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceE
Q 021362 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~ 229 (313)
++|++|++..+. .+|+.+|+.+.....+.......+++.++++.++. ..+.++.+||||||||++||++++.++++
T Consensus 74 i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 151 (213)
T cd03301 74 IAMVFQNYALYP--HMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKV 151 (213)
T ss_pred EEEEecChhhcc--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 899999965443 47999999886544333222334566778888874 34667789999999999999999999999
Q ss_pred EEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccC
Q 021362 230 VIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTG 276 (313)
Q Consensus 230 Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G 276 (313)
+++|+|+..||. .+++.|+++.+ ..+++|||++++.. +++ |++++.|
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 152 FLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999 45666666543 24799999998865 443 6655543
No 78
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.2e-36 Score=269.54 Aligned_cols=185 Identities=14% Similarity=0.089 Sum_probs=150.2
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------C
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------P 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------~ 149 (313)
||+++|+++.|++......+|+++||++++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 77 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE---PDAGFATVDGFDVVKEPAEAR 77 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEEcccCHHHHH
Confidence 48899999999865111139999999999999999999999999999999999999 9999999998653 2
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCc
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~a 227 (313)
+.++|++|++..+. .+|+.||+.+....++.......+++.++++.++.. .++.+.+|||||+||++||++++.++
T Consensus 78 ~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 155 (218)
T cd03266 78 RRLGFVSDSTGLYD--RLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDP 155 (218)
T ss_pred hhEEEecCCcccCc--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCC
Confidence 45999999974433 479999998765544433333345678888888743 46677799999999999999999999
Q ss_pred eEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH
Q 021362 228 KVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 228 r~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
++|++|+|+..||. .+++.|+++.+ ..|++|||++++..
T Consensus 156 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~ 201 (218)
T cd03266 156 PVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVER 201 (218)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99999999999999 45566665543 24799999998765
No 79
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-36 Score=272.17 Aligned_cols=200 Identities=14% Similarity=0.050 Sum_probs=161.0
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCceeecCCCCC-
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-----~~G~i~~~g~~~- 148 (313)
|++|+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~i~ 73 (250)
T PRK14247 1 MNKIEIRDLKVSFGQVE----VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIE---LYPEARVSGEVYLDGQDIF 73 (250)
T ss_pred CceEEEEeeEEEECCee----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCCCCceEEEECCEECC
Confidence 56899999999998765 9999999999999999999999999999999999986 5 699999999653
Q ss_pred -------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCC--CCCccHHHHHHHHHHhhcC------CCccCCCCCCcC
Q 021362 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 213 (313)
Q Consensus 149 -------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~------~~~~~~~LSgG~ 213 (313)
...++|++|++..++ .+|+.||+.+.....+. ......+.+.++++.++.. .+..+.+|||||
T Consensus 74 ~~~~~~~~~~i~~v~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~ 151 (250)
T PRK14247 74 KMDVIELRRRVQMVFQIPNPIP--NLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQ 151 (250)
T ss_pred cCCHHHHhccEEEEeccCccCC--CCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHH
Confidence 245899999965443 48999999876543222 1122235567888888742 356677999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchH
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~e 280 (313)
+||+++|++++.++++|++|+|+..||. .+++.|+++.. ..+++|||++++.. |++ |++++.|++++
T Consensus 152 ~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14247 152 QQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTRE 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHH
Confidence 9999999999999999999999999999 45555555533 24799999998865 554 89999999887
Q ss_pred HHH
Q 021362 281 VAK 283 (313)
Q Consensus 281 v~~ 283 (313)
+..
T Consensus 232 ~~~ 234 (250)
T PRK14247 232 VFT 234 (250)
T ss_pred HHc
Confidence 753
No 80
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-36 Score=279.12 Aligned_cols=203 Identities=16% Similarity=0.148 Sum_probs=164.5
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
+|+++|+++.|++.. ...+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.+..
T Consensus 4 ~l~~~~l~~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~ 79 (279)
T PRK13650 4 IIEVKNLTFKYKEDQ-EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE---AESGQIIIDGDLLTEENVWDI 79 (279)
T ss_pred eEEEEeEEEEcCCCC-cCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECCcCcHHHH
Confidence 699999999997421 1238999999999999999999999999999999999999 99999999997642
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
+.++|++|++...+. .+|+.+|+.+.....+.......+++.++++.++. ..++.+.+|||||+||++||++++.+
T Consensus 80 ~~~i~~v~q~~~~~~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~ 158 (279)
T PRK13650 80 RHKIGMVFQNPDNQFV-GATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMR 158 (279)
T ss_pred HhhceEEEcChHHhcc-cccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 358999999632222 37999999887655454443445667888898884 34667789999999999999999999
Q ss_pred ceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH--HHh----hcccccCCchHHHHH
Q 021362 227 HKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 227 ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~~ 284 (313)
+++|++|+|+..||. .+++.|+++.++ .+++|||++++.. |++ |+++..|+++++...
T Consensus 159 p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 159 PKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999 556666666432 4699999999854 554 899999998887543
No 81
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-36 Score=277.45 Aligned_cols=201 Identities=14% Similarity=0.110 Sum_probs=163.1
Q ss_pred ccEEEEccceEEcc-ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC----
Q 021362 75 IPVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~-~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~---- 149 (313)
|.+|+++|+++.|+ +.. +|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|++..
T Consensus 1 ~~~l~~~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~ 73 (277)
T PRK13652 1 MHLIETRDLCYSYSGSKE----ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK---PTSGSVLIRGEPITKENI 73 (277)
T ss_pred CceEEEEEEEEEeCCCCc----eeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCH
Confidence 56899999999996 344 8999999999999999999999999999999999999 99999999997532
Q ss_pred ----CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhh
Q 021362 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 150 ----~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al 223 (313)
..++|++|++..... ..|+.+|+.+.....+.......+++.++++.++. ..++.+.+|||||+||++||+++
T Consensus 74 ~~~~~~i~~v~q~~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL 152 (277)
T PRK13652 74 REVRKFVGLVFQNPDDQIF-SPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVI 152 (277)
T ss_pred HHHHhheEEEecCcccccc-cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 258999999632222 36999999876544333322334457788888774 34667789999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+.++++|++|+|+..||. .+++.|+++..+ .+++|||++++.+ |++ |++++.|+++++..
T Consensus 153 ~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 153 AMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 999999999999999998 555666665432 4799999999876 655 99999999988854
No 82
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.9e-36 Score=272.47 Aligned_cols=197 Identities=18% Similarity=0.196 Sum_probs=158.2
Q ss_pred EEEEccceEEcc-ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~-~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
||+++|+++.|+ +.. +|+|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~~----il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQ----ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE---PSSGSILLEGTDITKLRGKK 73 (243)
T ss_pred CeEEEeeeeecCCCcc----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCccEEEECCEEhhhCCHHH
Confidence 488999999997 555 9999999999999999999999999999999999999 9999999999653
Q ss_pred ----CCeEEEEecCCCCCCcccCCcccChHHHHHhc--------CCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCC
Q 021362 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--------GAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVG 214 (313)
Q Consensus 149 ----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~--------~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~k 214 (313)
.+.++|++|++..++ .+|+.+|+.+..... +.......+++.++++.++. ..+..+.+|||||+
T Consensus 74 ~~~~~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 151 (243)
T TIGR02315 74 LRKLRRRIGMIFQHYNLIE--RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQ 151 (243)
T ss_pred HHHHHhheEEEcCCCcccc--cccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHH
Confidence 234899999965443 479999997643211 11112334567788888874 34567779999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCch
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ 279 (313)
||++||++++.++++|++|+|+..||. .+.+.|+++.+ ..+++|||++++.. +++ |++++.|+++
T Consensus 152 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 231 (243)
T TIGR02315 152 QRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPS 231 (243)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHH
Confidence 999999999999999999999999999 45566666542 24699999999865 554 8999889887
Q ss_pred HHH
Q 021362 280 DVA 282 (313)
Q Consensus 280 ev~ 282 (313)
++.
T Consensus 232 ~~~ 234 (243)
T TIGR02315 232 ELD 234 (243)
T ss_pred HhC
Confidence 763
No 83
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-36 Score=277.47 Aligned_cols=199 Identities=17% Similarity=0.134 Sum_probs=159.7
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
||+++|+++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 1 ml~~~~l~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~ 73 (271)
T PRK13638 1 MLATSDLWFRYQDEP----VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR---PQKGAVLWQGKPLDYSKRGLL 73 (271)
T ss_pred CeEEEEEEEEcCCcc----cccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCccEEEECCEEcccccCCHH
Confidence 489999999998765 9999999999999999999999999999999999999 99999999997531
Q ss_pred ---CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhc
Q 021362 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 150 ---~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
+.++|++|++..... ..++.+|+.+.....+.......+++.++++.++. ..+.++.+||||||||++||++++
T Consensus 74 ~~~~~i~~v~q~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~ 152 (271)
T PRK13638 74 ALRQQVATVFQDPEQQIF-YTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALV 152 (271)
T ss_pred HHHhheEEEeeChhhccc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHH
Confidence 358999998642222 25788888876544443322233456778888773 346677799999999999999999
Q ss_pred cCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
.++++|++|+|+..||. .+++.|.++... .|++|||++++.. |++ |++++.|+++++..
T Consensus 153 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (271)
T PRK13638 153 LQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999 455666655432 4699999999866 554 89999999887753
No 84
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-36 Score=267.47 Aligned_cols=180 Identities=14% Similarity=0.131 Sum_probs=148.4
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC----CCeEE
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----PDVAT 153 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~----~~~i~ 153 (313)
|+++|+++.|++.. +|+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. ...++
T Consensus 1 l~~~~l~~~~~~~~----~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGRVT----ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL---PDSGEVLFDGKPLDIAARNRIG 73 (210)
T ss_pred CEEEEEEEEECCEE----EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCCchhHHHHccEE
Confidence 46899999998665 9999999999999999999999999999999999999 9999999999764 34699
Q ss_pred EEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCceEEE
Q 021362 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 154 ~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar~Li 231 (313)
|++|++..+. .+|+.||+.+....++.+.....+.+.++++.++.. .+.++.+|||||+||++||++++.++++++
T Consensus 74 ~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~ll 151 (210)
T cd03269 74 YLPEERGLYP--KMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLI 151 (210)
T ss_pred EeccCCcCCc--CCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999965433 479999998765444443333445677888888743 355677999999999999999999999999
Q ss_pred EcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH
Q 021362 232 VDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 232 ~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
+|+|+..||. .+++.|+++.+ ..+++|||++++..
T Consensus 152 lDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~ 193 (210)
T cd03269 152 LDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEE 193 (210)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 9999999999 45555655543 24799999998765
No 85
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=2.2e-36 Score=268.39 Aligned_cols=194 Identities=16% Similarity=0.141 Sum_probs=155.7
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 148 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--------- 148 (313)
|+++|+++.|++.. +|+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (222)
T cd03224 1 LEVENLNAGYGKSQ----ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP---PRSGSIRFDGRDITGLPPHERA 73 (222)
T ss_pred CEEeeEEeecCCee----EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCCCCHHHHH
Confidence 57899999998765 9999999999999999999999999999999999999 9999999998652
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---cCCCccCCCCCCcCCCcchhhhhhcc
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---NQGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---~~~~~~~~~LSgG~kqRv~ia~al~~ 225 (313)
.+.++|++|++..++ .+|+.+|+.+.....+ ......++.++++.++ ...+.++.+|||||+||++||++++.
T Consensus 74 ~~~i~~~~q~~~~~~--~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 149 (222)
T cd03224 74 RAGIGYVPEGRRIFP--ELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMS 149 (222)
T ss_pred hcCeEEeccccccCC--CCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhc
Confidence 234899999965443 4899999988654332 1223344566666663 33466777999999999999999999
Q ss_pred CceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 226 ~ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
++++|++|+|+..||. .+++.|+++.+ ..+++|||++++.. +++ |+++..|+++++.
T Consensus 150 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 150 RPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999 55666666543 24799999998876 554 8888888776653
No 86
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.5e-36 Score=271.42 Aligned_cols=198 Identities=18% Similarity=0.200 Sum_probs=159.9
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
||+++|+++.|++.. +|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 1 ~l~~~~l~~~~~~~~----il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 73 (240)
T PRK09493 1 MIEFKNVSKHFGPTQ----VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE---ITSGDLIVDGLKVNDPKVDER 73 (240)
T ss_pred CEEEEeEEEEECCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCChhHH
Confidence 488999999998765 9999999999999999999999999999999999998 99999999996532
Q ss_pred ---CeEEEEecCCCCCCcccCCcccChHHHHH-hcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhh
Q 021362 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 150 ---~~i~~v~qd~~~~~~~~ltv~e~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al 223 (313)
+.++|++|++..++ .+|+.+|+.+... ..+.......+++.++++.++.. .+.++.+||+||+||++||+++
T Consensus 74 ~~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 74 LIRQEAGMVFQQFYLFP--HLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred HHhhceEEEecccccCC--CCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHH
Confidence 35899999965443 4799999987542 22222223345677888888743 4567779999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+.+++++++|+|+..||. .+++.|.++.+ ..+++|||++++.. |++ |++++.|++.++..
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhc
Confidence 999999999999999999 44555555533 24799999999875 554 89998898877643
No 87
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-36 Score=271.90 Aligned_cols=196 Identities=15% Similarity=0.159 Sum_probs=159.6
Q ss_pred EEEccceEEccc-cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 78 l~~~~l~~~y~~-~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
|+++|+++.|++ .. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 73 (242)
T cd03295 1 IEFENVTKRYGGGKK----AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE---PTSGEIFIDGEDIREQDPVEL 73 (242)
T ss_pred CEEEEEEEEeCCcce----EeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCeEcCcCChHHh
Confidence 468999999987 55 9999999999999999999999999999999999999 9999999999653
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC----CCccCCCCCCcCCCcchhhhhhc
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
...++|++|++..++ .+|+.||+.+.....+.......+++.++++.++.. .+.++.+|||||+||++||++++
T Consensus 74 ~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 74 RRKIGYVIQQIGLFP--HMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred hcceEEEccCccccC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 235899999965443 489999998765444333223345678888988854 35667799999999999999999
Q ss_pred cCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
.++++|++|+|+..||. .+++.|+++.+ ..|++|||++++.. |++ |++++.|+++++.
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999 45555665543 24799999998765 554 8988888877764
No 88
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-36 Score=277.15 Aligned_cols=199 Identities=17% Similarity=0.145 Sum_probs=164.2
Q ss_pred EEEEccceEEcc-ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~-~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
+|+++|+++.|+ +.. +|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~---p~~G~i~i~g~~~~~~~~~~ 77 (283)
T PRK13636 5 ILKVEELNYNYSDGTH----ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK---PSSGRILFDGKPIDYSRKGL 77 (283)
T ss_pred eEEEEeEEEEeCCCCe----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCccEEEECCEECCCCcchH
Confidence 799999999996 444 9999999999999999999999999999999999999 9999999999653
Q ss_pred ---CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhh
Q 021362 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al 223 (313)
...++|++|++..... ..|++||+.+.....+.+.....+++.++++.++. ..+.++.+|||||+||++||+++
T Consensus 78 ~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL 156 (283)
T PRK13636 78 MKLRESVGMVFQDPDNQLF-SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVL 156 (283)
T ss_pred HHHHhhEEEEecCcchhhc-cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 1358999999632222 36999999886554454443444667888888884 34667889999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+.++++|++|+|+..||. .+++.|+++.+ ..+++|||++++.. |++ |++++.|+++++..
T Consensus 157 ~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 157 VMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999 45566666643 24699999999875 555 99999999988764
No 89
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-36 Score=272.28 Aligned_cols=198 Identities=19% Similarity=0.222 Sum_probs=160.7
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
||+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~G~i~~~g~~~~~~~~~~~ 74 (258)
T PRK13548 2 MLEARNLSVRLGGRT----LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS---PDSGEVRLNGRPLADWSPAEL 74 (258)
T ss_pred eEEEEeEEEEeCCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcccCCHHHh
Confidence 689999999998766 9999999999999999999999999999999999999 9999999999653
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhc--
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG-- 224 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~-- 224 (313)
.+.++|++|++..++ .+|+.||+.+.....+........++.++++.++. ..+..+.+|||||+||++||++++
T Consensus 75 ~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~ 152 (258)
T PRK13548 75 ARRRAVLPQHSSLSF--PFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQL 152 (258)
T ss_pred hhheEEEccCCcCCC--CCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcc
Confidence 235899999965433 37999999876433222222234557788888774 346678899999999999999999
Q ss_pred ----cCceEEEEcCCccccCh----hhHHHHHhhc-c---ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 225 ----LQHKVVIVDGNYLFLDG----GVWKDVSSMF-D---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 225 ----~~ar~Li~d~~~lllDE----~~~~~l~~l~-~---~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
.++++|++|+|+..||. .+.+.|+++. + ..|++|||++++.. |++ |++++.|+++++..
T Consensus 153 ~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 153 WEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred cccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 58999999999999999 4556666654 2 24799999999875 554 89998898887754
No 90
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-36 Score=277.11 Aligned_cols=198 Identities=16% Similarity=0.205 Sum_probs=161.6
Q ss_pred EEEEccceEEcc-ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 77 ~l~~~~l~~~y~-~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
||+++|+++.|+ +.. +|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.+..
T Consensus 1 ml~~~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 73 (274)
T PRK13644 1 MIRLENVSYSYPDGTP----ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR---PQKGKVLVSGIDTGDFSKLQ 73 (274)
T ss_pred CEEEEEEEEEcCCCCc----eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEECCccccHH
Confidence 488999999995 344 9999999999999999999999999999999999999 99999999996532
Q ss_pred ---CeEEEEecCCCC-CCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhh
Q 021362 150 ---DVATVLPMDGFH-LYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 150 ---~~i~~v~qd~~~-~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al 223 (313)
..++|++|++.. +. ..|+.+|+.+.....+.......+++.++++.++. ..+.++.+||+||+||++||+|+
T Consensus 74 ~~~~~i~~v~q~~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral 151 (274)
T PRK13644 74 GIRKLVGIVFQNPETQFV--GRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGIL 151 (274)
T ss_pred HHHhheEEEEEChhhhcc--cchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 348999999642 33 37999999876554443333334567778888874 34567779999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
+.++++|++|+|+..||. .+++.|+++.++ .+++|||++++.. |++ |++++.|+++++..
T Consensus 152 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 152 TMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999998 566666666442 3799999999854 554 89999999888754
No 91
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=6e-36 Score=269.18 Aligned_cols=197 Identities=15% Similarity=0.142 Sum_probs=160.0
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
+|+++|+++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 2 ~i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~ 74 (242)
T TIGR03411 2 ILYLEGLSVSFDGFK----ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR---PDEGSVLFGGTDLTGLPEHQI 74 (242)
T ss_pred eEEEEeeEEEcCCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCeecCCCCHHHH
Confidence 699999999998765 9999999999999999999999999999999999999 99999999997532
Q ss_pred --CeEEEEecCCCCCCcccCCcccChHHHHHhcC--------CCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcc
Q 021362 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG--------APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPV 217 (313)
Q Consensus 150 --~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~--------~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv 217 (313)
..++|++|++..++ .+|+.||+.+...... ........++.++++.++.. .+..+.+|||||+||+
T Consensus 75 ~~~~i~~~~q~~~~~~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv 152 (242)
T TIGR03411 75 ARAGIGRKFQKPTVFE--NLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWL 152 (242)
T ss_pred HhcCeeEeccccccCC--CCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 24899999965443 4899999987543110 11122345678888888743 3567779999999999
Q ss_pred hhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 218 EDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 218 ~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
+||++++.++++|++|+|+..||. .+++.|+++.. ..|++|||++++.. |++ |++++.|+++++.
T Consensus 153 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 153 EIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred HHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence 999999999999999999999999 45555555543 34799999999876 554 8988889887764
No 92
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-36 Score=272.77 Aligned_cols=192 Identities=13% Similarity=0.106 Sum_probs=154.9
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC---CeEE
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---DVAT 153 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~---~~i~ 153 (313)
||+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.. ..++
T Consensus 1 ml~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 73 (255)
T PRK11248 1 MLQISHLYADYGGKP----ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP---YQHGSITLDGKPVEGPGAERG 73 (255)
T ss_pred CEEEEEEEEEeCCee----eEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCCcEE
Confidence 489999999998765 9999999999999999999999999999999999999 99999999986542 3589
Q ss_pred EEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCceEEE
Q 021362 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 154 ~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar~Li 231 (313)
|++|++..+. .+|+.+|+.+.....+.......+++.++++.++.. .+.++.+|||||+||++||++++.++++|+
T Consensus 74 ~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lll 151 (255)
T PRK11248 74 VVFQNEGLLP--WRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLL 151 (255)
T ss_pred EEeCCCccCC--CCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999965433 479999998765444433333345678888888843 355677999999999999999999999999
Q ss_pred EcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh------hcccccCC
Q 021362 232 VDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL------KRHISTGK 277 (313)
Q Consensus 232 ~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~------griv~~G~ 277 (313)
+|+|+..||. .+++.|.++.. ..|++|||++++.. |++ |++++.+.
T Consensus 152 LDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~ 214 (255)
T PRK11248 152 LDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLP 214 (255)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEec
Confidence 9999999999 55666666532 24799999998876 433 66665543
No 93
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=6e-36 Score=270.14 Aligned_cols=197 Identities=12% Similarity=0.104 Sum_probs=160.0
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC-----CceeecCCCCCC--
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSFDSQVKPP-- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~-----~G~i~~~g~~~~-- 149 (313)
+|+++|+++.|++.. +|+|+||+|++||+++|+|+||||||||+++|+|+++ |+ +|+|.++|.+..
T Consensus 1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~~~~~~G~i~~~g~~~~~~ 73 (247)
T TIGR00972 1 AIEIENLNLFYGEKE----ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND---LVPGVRIEGKVLFDGQDIYDK 73 (247)
T ss_pred CEEEEEEEEEECCee----eecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceEEEECCEEcccc
Confidence 488999999998765 9999999999999999999999999999999999998 98 999999986532
Q ss_pred --------CeEEEEecCCCCCCcccCCcccChHHHHHhcCC-CCCccHHHHHHHHHHhhcC------CCccCCCCCCcCC
Q 021362 150 --------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (313)
Q Consensus 150 --------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~------~~~~~~~LSgG~k 214 (313)
+.++|++|+... +. +|+.||+.+.....+. +.....+++.++++.++.. .+.++.+||||||
T Consensus 74 ~~~~~~~~~~i~~v~q~~~~-~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~ 150 (247)
T TIGR00972 74 KIDVVELRRRVGMVFQKPNP-FP--MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQ 150 (247)
T ss_pred ccchHHHHhheEEEecCccc-CC--CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHH
Confidence 358999999643 32 7999999886544332 2222345677788888754 3456779999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HHh----hcccccCCchHH
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv~----griv~~G~~~ev 281 (313)
||++||++++.+++++++|+|+..||. .+++.|+++.+. .+++|||++++.. |++ |+++..|+++++
T Consensus 151 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 151 QRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999 455555555432 4799999998876 555 899999988877
Q ss_pred HH
Q 021362 282 AK 283 (313)
Q Consensus 282 ~~ 283 (313)
..
T Consensus 231 ~~ 232 (247)
T TIGR00972 231 FT 232 (247)
T ss_pred Hh
Confidence 43
No 94
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-36 Score=265.15 Aligned_cols=179 Identities=15% Similarity=0.072 Sum_probs=146.8
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------CC
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PD 150 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------~~ 150 (313)
|+++|+++.|++.. +|+|+||++++| +++|+||||||||||+++|+|+++ |++|+|.++|.+. .+
T Consensus 1 i~~~~~~~~~~~~~----~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 72 (211)
T cd03264 1 LQLENLTKRYGKKR----ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP---PSSGTIRIDGQDVLKQPQKLRR 72 (211)
T ss_pred CEEEEEEEEECCEE----EEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCCccccchHHHHh
Confidence 47899999998765 999999999999 999999999999999999999999 9999999999764 24
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCce
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar 228 (313)
.++|++|++..++ .+|+.||+.+.....+.......+.+.++++.++. ..+.++.+|||||+||++||++++.+++
T Consensus 73 ~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 150 (211)
T cd03264 73 RIGYLPQEFGVYP--NFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPS 150 (211)
T ss_pred heEEecCCCcccc--cCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 5899999976443 47999999886554443333334567788888874 3456777999999999999999999999
Q ss_pred EEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH
Q 021362 229 VVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ 266 (313)
Q Consensus 229 ~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~ 266 (313)
+|++|+|+..||. .+++.|+++.+. .+++|||++++..
T Consensus 151 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~ 194 (211)
T cd03264 151 ILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVES 194 (211)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHH
Confidence 9999999999999 445555555322 4799999999865
No 95
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-36 Score=277.25 Aligned_cols=203 Identities=12% Similarity=0.074 Sum_probs=163.5
Q ss_pred EEEEccceEEccccc-cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 77 VVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~-~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
.|+++||++.|++.. ....+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK---PTTGTVTVDDITITHKTKDK 78 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 489999999996421 11239999999999999999999999999999999999999 9999999999653
Q ss_pred -----CCeEEEEecCCC-CCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchh
Q 021362 149 -----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 149 -----~~~i~~v~qd~~-~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~i 219 (313)
.+.++|+||++. .++. .|+.+|+.+.....+.......+++.++++.++.. .+..+.+|||||+||++|
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~l 156 (286)
T PRK13646 79 YIRPVRKRIGMVFQFPESQLFE--DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAI 156 (286)
T ss_pred hHHHHHhheEEEecChHhccch--hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHH
Confidence 235899999853 2332 59999998876554444333455678888888853 345777999999999999
Q ss_pred hhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 220 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 220 a~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
|++++.++++|++|+|+..||. .+++.|+++.+ ..+++|||++++.. |++ |++++.|++.++...
T Consensus 157 araL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 236 (286)
T PRK13646 157 VSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD 236 (286)
T ss_pred HHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999 55566666532 24799999999865 665 999999999887653
No 96
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=4.3e-36 Score=264.21 Aligned_cols=185 Identities=16% Similarity=0.112 Sum_probs=151.1
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------Ce
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------DV 151 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------~~ 151 (313)
|+++|+++.|++.. +|+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.. +.
T Consensus 1 l~~~~l~~~~~~~~----~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (208)
T cd03268 1 LKTNDLTKTYGKKR----VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK---PDSGEITFDGKSYQKNIEALRR 73 (208)
T ss_pred CEEEEEEEEECCeE----eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCCcccchHHHHhh
Confidence 47899999997665 9999999999999999999999999999999999999 99999999997642 35
Q ss_pred EEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceE
Q 021362 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~ 229 (313)
++|++|++..++ .+|+.||+.+....++. ..+++.++++.++. ..++++.+||||||||++||++++.++++
T Consensus 74 i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 147 (208)
T cd03268 74 IGALIEAPGFYP--NLTARENLRLLARLLGI----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDL 147 (208)
T ss_pred EEEecCCCccCc--cCcHHHHHHHHHHhcCC----cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 899999965433 48999999887544332 34567788888874 34667779999999999999999999999
Q ss_pred EEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hccccc
Q 021362 230 VIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHIST 275 (313)
Q Consensus 230 Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~ 275 (313)
|++|+|+..||. .+++.|+++.++ .+++|||++++.. +++ |++++.
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~ 207 (208)
T cd03268 148 LILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEE 207 (208)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEec
Confidence 999999999999 455555555432 4799999998865 443 665543
No 97
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=4.6e-36 Score=265.78 Aligned_cols=183 Identities=16% Similarity=0.123 Sum_probs=146.9
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 148 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--------- 148 (313)
|+++|+++.|++..+...+|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 77 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PTSGEVRVDGTDISKLSEKELA 77 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC---CCceeEEECCEehhhcchhHHH
Confidence 4689999999762101129999999999999999999999999999999999999 9999999998652
Q ss_pred ---CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhh
Q 021362 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al 223 (313)
.+.++|++|++..+. .+|+.||+.+.....+.......+++.++++.++.. .++.+.+||||||||++||+++
T Consensus 78 ~~~~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 155 (218)
T cd03255 78 AFRRRHIGFVFQSFNLLP--DLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARAL 155 (218)
T ss_pred HHHhhcEEEEeeccccCC--CCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHH
Confidence 135899999965443 479999998875544432222345677888888843 3567779999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAM 265 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~ 265 (313)
+.++++|++|+|+..||. .+++.|.++.+ ..+++|||++++.
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 205 (218)
T cd03255 156 ANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE 205 (218)
T ss_pred ccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh
Confidence 999999999999999999 55666666644 2469999999874
No 98
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-36 Score=270.29 Aligned_cols=200 Identities=13% Similarity=0.050 Sum_probs=160.0
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCceeecCCCCCC
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKPP 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-----~~G~i~~~g~~~~ 149 (313)
+++|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.+..
T Consensus 2 ~~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~~~~~~G~i~~~g~~i~ 74 (253)
T PRK14267 2 KFAIETVNLRVYYGSNH----VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLE---LNEEARVEGEVRLFGRNIY 74 (253)
T ss_pred cceEEEEeEEEEeCCee----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---cccCCCCceEEEECCEEcc
Confidence 35799999999998765 9999999999999999999999999999999999997 7 4999999986532
Q ss_pred ----------CeEEEEecCCCCCCcccCCcccChHHHHHhcCC--CCCccHHHHHHHHHHhhcC------CCccCCCCCC
Q 021362 150 ----------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDH 211 (313)
Q Consensus 150 ----------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~------~~~~~~~LSg 211 (313)
..++|++|++..+. .+|+.||+.+.....+. +......++.++++.++.. .+.++.+|||
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 152 (253)
T PRK14267 75 SPDVDPIEVRREVGMVFQYPNPFP--HLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSG 152 (253)
T ss_pred ccccChHHHhhceeEEecCCccCC--CCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCH
Confidence 35899999965443 48999999876543332 1122234567777777632 3556779999
Q ss_pred cCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCc
Q 021362 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKP 278 (313)
Q Consensus 212 G~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~ 278 (313)
||+||++||++++.++++|++|+|+..||. .+.+.|+++.+ ..|++|||++++.. |++ |++++.|++
T Consensus 153 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 232 (253)
T PRK14267 153 GQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPT 232 (253)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999 45555555543 24799999999865 554 899999998
Q ss_pred hHHHH
Q 021362 279 PDVAK 283 (313)
Q Consensus 279 ~ev~~ 283 (313)
+++..
T Consensus 233 ~~~~~ 237 (253)
T PRK14267 233 RKVFE 237 (253)
T ss_pred HHHHh
Confidence 87753
No 99
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=2.8e-36 Score=266.34 Aligned_cols=181 Identities=12% Similarity=0.072 Sum_probs=145.2
Q ss_pred EEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---CCeEEEE
Q 021362 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDVATVL 155 (313)
Q Consensus 79 ~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~---~~~i~~v 155 (313)
+++|+++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.++|+
T Consensus 1 ~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGGHP----VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK---PTSGSIRVFGKPLEKERKRIGYV 73 (213)
T ss_pred CcccceeEECCEE----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCccHHHHHhheEEe
Confidence 3689999998765 9999999999999999999999999999999999999 9999999999753 4569999
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcC----CCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceE
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRG----APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~----~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~ 229 (313)
+|++.......+|+.||+.+...... .......+++.++++.++. ..++++.+||||||||++||++++.++++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 153 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDL 153 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 99965422223799999987543211 1112234567788888874 34567789999999999999999999999
Q ss_pred EEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH
Q 021362 230 VIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 230 Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
|++|+|+..||. .+.+.|+++.+ ..|++|||++++..
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~ 197 (213)
T cd03235 154 LLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLE 197 (213)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 999999999999 45566665542 24799999998865
No 100
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=269.39 Aligned_cols=198 Identities=13% Similarity=0.107 Sum_probs=159.1
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCceeecCCCCC--
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP-- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-----~~G~i~~~g~~~-- 148 (313)
++|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 6 ~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~i~~~g~~i~~ 78 (254)
T PRK14273 6 AIIETENLNLFYTDFK----ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMND---LVEGIKIEGNVIYEGKNIYS 78 (254)
T ss_pred ceEEEeeeEEEeCCce----eecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCcCCCCceEEEECCEeccc
Confidence 4799999999998765 9999999999999999999999999999999999998 6 489999998642
Q ss_pred --------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC-CccHHHHHHHHHHhhc------CCCccCCCCCCcC
Q 021362 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGV 213 (313)
Q Consensus 149 --------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~LSgG~ 213 (313)
...++|++|++..+ . +|++||+.+.....+... ....+++.++++.++. ..+.++.+|||||
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~ 155 (254)
T PRK14273 79 NNFDILELRRKIGMVFQTPNPF-L--MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQ 155 (254)
T ss_pred ccccHHHHhhceEEEeeccccc-c--CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHH
Confidence 23589999996543 2 799999988654333211 1223456677777653 2456777999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HHh----hcccccCCchH
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv~----griv~~G~~~e 280 (313)
|||++||++++.++++|++|+|+..||. .+++.|.++... .|++|||++++.. |++ |+++..|++.+
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 235 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDE 235 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999 455555555432 4699999999876 554 89999999888
Q ss_pred HHH
Q 021362 281 VAK 283 (313)
Q Consensus 281 v~~ 283 (313)
+..
T Consensus 236 ~~~ 238 (254)
T PRK14273 236 LFF 238 (254)
T ss_pred HHh
Confidence 754
No 101
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.7e-37 Score=259.56 Aligned_cols=202 Identities=15% Similarity=0.192 Sum_probs=164.9
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
||+++|++|.|+++. +|+++|++|++|.+++|+|||||||||||.+++.|++ .++|+|+++|.+..
T Consensus 1 MI~i~nv~K~y~~~~----vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~---~d~G~i~i~g~~~~~~~s~~L 73 (252)
T COG4604 1 MITIENVSKSYGTKV----VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK---KDSGEITIDGLELTSTPSKEL 73 (252)
T ss_pred CeeehhhhHhhCCEE----eeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc---ccCceEEEeeeecccCChHHH
Confidence 589999999999988 9999999999999999999999999999999999999 99999999997743
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHH--hcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhc
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHA--RRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~--~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
+.++++-|+.... ..+||+|-+.|+.. .+|.+.++++..+.++++.+. ...+++..+||||||||..||+.++
T Consensus 74 Ak~lSILkQ~N~i~--~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVla 151 (252)
T COG4604 74 AKKLSILKQENHIN--SRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLA 151 (252)
T ss_pred HHHHHHHHhhchhh--heeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeee
Confidence 3467788875433 35899999988754 346667888899999999988 4567889999999999999966666
Q ss_pred cCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHHHHHH
Q 021362 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWRIE 287 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~~~~ 287 (313)
.+...+++|+|+.-||- .+++.++.+.++ +++|-||+++|.. .++ |+++..|+|+|++.....
T Consensus 152 QdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~~~L 229 (252)
T COG4604 152 QDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEIL 229 (252)
T ss_pred ccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCHHHH
Confidence 66666666666666665 455555555443 5799999999988 555 999999999999766543
No 102
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=5.4e-36 Score=265.88 Aligned_cols=185 Identities=14% Similarity=0.063 Sum_probs=147.3
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
+|+++|+++.|++..+...+|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN---PTSGEVLFNGQSLSKLSSNER 77 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcCHhHH
Confidence 37899999999752111239999999999999999999999999999999999999 99999999986531
Q ss_pred -----CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhh
Q 021362 150 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 150 -----~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~a 222 (313)
+.++|++|++..+. .+|+.||+.+.............+++.++++.++.. .++.+.+|||||+||++||++
T Consensus 78 ~~~~~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 155 (221)
T TIGR02211 78 AKLRNKKLGFIYQFHHLLP--DFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARA 155 (221)
T ss_pred HHHHHhcEEEEecccccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 35899999965433 479999998765433322222345677888888743 456677999999999999999
Q ss_pred hccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
++.++++|++|+|+..||. .+++.|+++.+ ..+++|||++++..
T Consensus 156 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~ 207 (221)
T TIGR02211 156 LVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK 207 (221)
T ss_pred HhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 9999999999999999999 55566665543 24799999998754
No 103
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.8e-36 Score=278.60 Aligned_cols=203 Identities=14% Similarity=0.124 Sum_probs=162.1
Q ss_pred cEEEEccceEEccccc-cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 76 PVVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~-~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
++|+++|+++.|++.. ....+|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|+++|.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~---p~~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK---SKYGTIQVGDIYIGDKKNN 96 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCEEccccccc
Confidence 4799999999997421 11239999999999999999999999999999999999999 9999999998442
Q ss_pred ------------------CCeEEEEecCCC-CCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccC
Q 021362 149 ------------------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYA 206 (313)
Q Consensus 149 ------------------~~~i~~v~qd~~-~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~ 206 (313)
.+.++|++|++. .++. .|+.||+.++....+.+......++.++++.++.. .+..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 174 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK--DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSP 174 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhcccc--chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 234899999863 3333 59999998865444433333445677888888853 45677
Q ss_pred CCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH---HHh----hcc
Q 021362 207 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRH 272 (313)
Q Consensus 207 ~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rv~----gri 272 (313)
.+||||||||++||++++.++++|++|+|+..||. .+++.|.++.+ ..+++|||++++.. |++ |++
T Consensus 175 ~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i 254 (320)
T PRK13631 175 FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKI 254 (320)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 79999999999999999999999999999999999 45555555533 24799999998765 555 999
Q ss_pred cccCCchHHHH
Q 021362 273 ISTGKPPDVAK 283 (313)
Q Consensus 273 v~~G~~~ev~~ 283 (313)
++.|+++++..
T Consensus 255 ~~~g~~~~~~~ 265 (320)
T PRK13631 255 LKTGTPYEIFT 265 (320)
T ss_pred EEeCCHHHHhc
Confidence 99999987743
No 104
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=270.19 Aligned_cols=198 Identities=13% Similarity=0.082 Sum_probs=159.4
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCceeecCCCCC-
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-----~~G~i~~~g~~~- 148 (313)
+++|+++|+++.|++.. +|+|+||+|++|++++|+|+||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 10 ~~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---~~~~~~~~G~i~~~g~~i~ 82 (258)
T PRK14268 10 QPQIKVENLNLWYGEKQ----ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMND---LIKNCRIEGKVSIEGEDIY 82 (258)
T ss_pred ceeEEEeeeEEEeCCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---cccCCCcceEEEECCEEcc
Confidence 56899999999998765 9999999999999999999999999999999999986 5 799999998652
Q ss_pred ---------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC------CCccCCCCCCcC
Q 021362 149 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 213 (313)
Q Consensus 149 ---------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~------~~~~~~~LSgG~ 213 (313)
.+.++|++|++.. +. +|+.||+.+.....+.......+++.++++.++.. .+..+.+|||||
T Consensus 83 ~~~~~~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~ 159 (258)
T PRK14268 83 EPDVDVVELRKNVGMVFQKPNP-FP--MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQ 159 (258)
T ss_pred cccchHHHHhhhEEEEecCCcc-Cc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHH
Confidence 2358999998643 32 69999998765444432222234567778877642 355677999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchH
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~e 280 (313)
+||++||++++.++++|++|+|+..||. .+++.|+++.+ ..+++|||++++.. |++ |++++.|++++
T Consensus 160 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 239 (258)
T PRK14268 160 QQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQ 239 (258)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999 45555555533 24699999999876 554 89999999887
Q ss_pred HH
Q 021362 281 VA 282 (313)
Q Consensus 281 v~ 282 (313)
+.
T Consensus 240 ~~ 241 (258)
T PRK14268 240 IF 241 (258)
T ss_pred Hh
Confidence 74
No 105
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=5.2e-36 Score=266.34 Aligned_cols=181 Identities=14% Similarity=0.090 Sum_probs=147.8
Q ss_pred EEEEccceEEc-cccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 77 VVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y-~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
||+++|+++.| ++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~ 73 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQ----ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER---PSAGKIWFSGHDITRLKNRE 73 (222)
T ss_pred CEEEEeeEEEecCCCe----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCChhH
Confidence 48899999999 5544 9999999999999999999999999999999999999 9999999998643
Q ss_pred ----CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhh
Q 021362 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~a 222 (313)
.+.++|++|++..++ .+|+.||+.+.....+.......+++.++++.++. ..++.+.+||+||+||++||++
T Consensus 74 ~~~~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 151 (222)
T PRK10908 74 VPFLRRQIGMIFQDHHLLM--DRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARA 151 (222)
T ss_pred HHHHHhheEEEecCccccc--cccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHH
Confidence 235899999965434 37999999886544443322334456778888874 3456777999999999999999
Q ss_pred hccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
++.++++|++|+|+..||. .+++.|.++.++ .+++|||++++..
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 202 (222)
T PRK10908 152 VVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISR 202 (222)
T ss_pred HHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 9999999999999999999 455666665432 4799999999876
No 106
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=6.4e-36 Score=267.05 Aligned_cols=195 Identities=12% Similarity=0.069 Sum_probs=157.2
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 148 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--------- 148 (313)
|+++||++.|++.. +|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (230)
T TIGR03410 1 LEVSNLNVYYGQSH----ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP---VKSGSIRLDGEDITKLPPHERA 73 (230)
T ss_pred CEEEeEEEEeCCeE----EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHHHHH
Confidence 46899999998766 9999999999999999999999999999999999999 9999999998652
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---cCCCccCCCCCCcCCCcchhhhhhcc
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---NQGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---~~~~~~~~~LSgG~kqRv~ia~al~~ 225 (313)
.+.++|++|++..++ .+|+.+|+.+....++.. ..+...++++.++ ...+.++.+|||||+||++||++++.
T Consensus 74 ~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 74 RAGIAYVPQGREIFP--RLTVEENLLTGLAALPRR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred HhCeEEeccCCcccC--CCcHHHHHHHHHHhcCcc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 235899999965433 479999998765433211 2233455666554 34567788999999999999999999
Q ss_pred CceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 226 ~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
+++++++|+|+..||. .+++.|.++.+ ..+++|||++++.. |++ |++++.|+++++..+
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~~~ 222 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELDED 222 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcChH
Confidence 9999999999999999 55556665543 24699999999876 555 899999988887444
No 107
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-36 Score=274.29 Aligned_cols=196 Identities=17% Similarity=0.198 Sum_probs=159.9
Q ss_pred EEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC----------
Q 021362 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---------- 148 (313)
Q Consensus 79 ~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~---------- 148 (313)
.++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 26 ~~~~~~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~---p~~G~i~i~g~~~~~~~~~~~~~ 98 (269)
T cd03294 26 SKEEILKKTGQTV----GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE---PTSGKVLIDGQDIAAMSRKELRE 98 (269)
T ss_pred hhhhhhhhcCCce----EeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccChhhhhh
Confidence 5679999999877 9999999999999999999999999999999999999 9999999998642
Q ss_pred --CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhc
Q 021362 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 --~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
.+.++|++|++..++ .+|+.+|+.+.....+.......+++.++++.++.. .+..+.+|||||+||++||++++
T Consensus 99 ~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~ 176 (269)
T cd03294 99 LRRKKISMVFQSFALLP--HRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALA 176 (269)
T ss_pred hhcCcEEEEecCcccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 235899999965443 489999998875443332223345677888888743 46677899999999999999999
Q ss_pred cCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
.++++|++|+|+..||. .+++.|.++.+ ..+++|||++++.. +++ |++++.|+++++..
T Consensus 177 ~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 177 VDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999 45555555532 23699999998865 554 89988898887754
No 108
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.4e-36 Score=268.33 Aligned_cols=196 Identities=15% Similarity=0.115 Sum_probs=157.6
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
+|+++|+++.|++.. +|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 74 (242)
T PRK11124 2 SIQLNGINCFYGAHQ----ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPSD 74 (242)
T ss_pred EEEEEeeEEEECCee----eEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecccccccch
Confidence 689999999998766 9999999999999999999999999999999999999 9999999998753
Q ss_pred ------CCeEEEEecCCCCCCcccCCcccChHHH-HHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchh
Q 021362 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 149 ------~~~i~~v~qd~~~~~~~~ltv~e~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~i 219 (313)
.+.++|++|++..+. .+|+.||+.+. ....+........++.++++.++.. .+..+.+|||||+||++|
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~--~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~l 152 (242)
T PRK11124 75 KAIRELRRNVGMVFQQYNLWP--HLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAI 152 (242)
T ss_pred hhHHHHHhheEEEecCccccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence 235899999965443 47999999753 2233332222345577788888743 456777999999999999
Q ss_pred hhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHH
Q 021362 220 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 220 a~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev 281 (313)
|++++.+++++++|+|+..||. .+++.|+++.+. .+++|||++++.. |++ |+++..|+++++
T Consensus 153 aral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999 444555554322 4699999999865 554 888888887765
No 109
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=9.6e-36 Score=263.01 Aligned_cols=181 Identities=15% Similarity=0.109 Sum_probs=147.3
Q ss_pred EEEEccceEEcc-ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~-~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
||+++|+++.|+ +.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~~----il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVA----ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT---PSRGQVRIAGEDVNRLRGRQ 73 (214)
T ss_pred CEEEEeeeEEeCCCce----eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHHH
Confidence 488999999994 444 9999999999999999999999999999999999999 9999999998653
Q ss_pred ----CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhh
Q 021362 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~a 222 (313)
.+.++|++|++..++ .+|+.+|+.+.....+.......+++.++++.++.. .++.+.+|||||+||++||++
T Consensus 74 ~~~~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a 151 (214)
T TIGR02673 74 LPLLRRRIGVVFQDFRLLP--DRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARA 151 (214)
T ss_pred HHHHHhheEEEecChhhcc--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 235899999965443 479999998875444332223345677888888743 355677999999999999999
Q ss_pred hccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
++.++++|++|+|+..||. .+++.|+++.++ .+++|||++++..
T Consensus 152 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~ 202 (214)
T TIGR02673 152 IVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDR 202 (214)
T ss_pred HhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 9999999999999999999 455555555332 4699999998765
No 110
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-36 Score=274.79 Aligned_cols=201 Identities=18% Similarity=0.176 Sum_probs=163.4
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
++|+++||++.|++. ...+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 4 ~~l~~~~l~~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~---p~~G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13635 4 EIIRVEHISFRYPDA--ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL---PEAGTITVGGMVLSEETVWD 78 (279)
T ss_pred ceEEEEEEEEEeCCC--CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCcHHH
Confidence 379999999999742 1129999999999999999999999999999999999999 9999999999753
Q ss_pred -CCeEEEEecCCC-CCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhc
Q 021362 149 -PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 -~~~i~~v~qd~~-~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
.+.++|++|++. .++ ..|+.||+.+.....+.+.....+++.++++.++. ..+.++.+|||||+||++||++++
T Consensus 79 ~~~~i~~~~q~~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~ 156 (279)
T PRK13635 79 VRRQVGMVFQNPDNQFV--GATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLA 156 (279)
T ss_pred HhhheEEEEeCHHHhcc--cccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 235899999963 233 37999999887554444333334567888888774 345677799999999999999999
Q ss_pred cCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
.++++|++|+|+..||. .+++.|+++.++ .+++|||++++.. |++ |++++.|+++++..
T Consensus 157 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 157 LQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999 566666666532 3699999999875 554 89999999887754
No 111
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.1e-35 Score=265.12 Aligned_cols=186 Identities=16% Similarity=0.054 Sum_probs=148.8
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
++|+++|+++.|++......+|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~~ 81 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD---GSSGEVSLVGQPLHQMDEEA 81 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeeEEECCEEcccCCHHH
Confidence 479999999999752111238999999999999999999999999999999999999 99999999986531
Q ss_pred ------CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhh
Q 021362 150 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 150 ------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~ 221 (313)
..++|++|++..+. .+|+.||+.+.....+.......+++.++++.++.. .+.++.+|||||+||++||+
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~ 159 (228)
T PRK10584 82 RAKLRAKHVGFVFQSFMLIP--TLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALAR 159 (228)
T ss_pred HHHHHhheEEEEEcccccCC--CcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHH
Confidence 35899999965433 479999998765433333233455678888888843 35677799999999999999
Q ss_pred hhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH
Q 021362 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
+++.++++|++|+|+..||. .+++.|+++.. ..+++|||++++..
T Consensus 160 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~ 212 (228)
T PRK10584 160 AFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR 212 (228)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh
Confidence 99999999999999999999 45556655532 24799999998744
No 112
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=6.9e-36 Score=262.42 Aligned_cols=176 Identities=16% Similarity=0.047 Sum_probs=144.1
Q ss_pred EEccceEEccc-cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-----CCeE
Q 021362 79 EARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PDVA 152 (313)
Q Consensus 79 ~~~~l~~~y~~-~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-----~~~i 152 (313)
+++|+++.|++ .. +|+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.+
T Consensus 1 ~~~~l~~~~~~~~~----~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~i 73 (205)
T cd03226 1 RIENISFSYKKGTE----ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK---ESSGSILLNGKPIKAKERRKSI 73 (205)
T ss_pred CcccEEEEeCCcCc----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEhhhHHhhcce
Confidence 36899999986 55 9999999999999999999999999999999999999 9999999999763 2469
Q ss_pred EEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEE
Q 021362 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 153 ~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~L 230 (313)
+|++|++..... .+|+.||+.+.....+ ....++.++++.++. ..++++.+||||||||++||++++.++++|
T Consensus 74 ~~~~q~~~~~~~-~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 148 (205)
T cd03226 74 GYVMQDVDYQLF-TDSVREELLLGLKELD----AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLL 148 (205)
T ss_pred EEEecChhhhhh-hccHHHHHhhhhhhcC----ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEE
Confidence 999999632222 3699999987643322 223567888998884 346677799999999999999999999999
Q ss_pred EEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH
Q 021362 231 IVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 231 i~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
++|+|+..||. .+++.|+++.++ .+++|||++++..
T Consensus 149 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~ 191 (205)
T cd03226 149 IFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAK 191 (205)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99999999999 455555555332 4799999998764
No 113
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.1e-35 Score=270.00 Aligned_cols=198 Identities=15% Similarity=0.138 Sum_probs=160.9
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
+|+++||++.|++.. +|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (257)
T PRK10619 5 KLNVIDLHKRYGEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGSIVVNGQTINLVRDKDG 77 (257)
T ss_pred cEEEeeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEccccccccc
Confidence 699999999998766 9999999999999999999999999999999999999 9999999998643
Q ss_pred -------------CCeEEEEecCCCCCCcccCCcccChHHHHH-hcCCCCCccHHHHHHHHHHhhcCC---CccCCCCCC
Q 021362 149 -------------PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDH 211 (313)
Q Consensus 149 -------------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~~---~~~~~~LSg 211 (313)
.+.++|++|++..+. .+|++||+.+... ..+.......+++.++++.++... +.++.+|||
T Consensus 78 ~~~~~~~~~~~~~~~~i~~v~q~~~l~~--~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~ 155 (257)
T PRK10619 78 QLKVADKNQLRLLRTRLTMVFQHFNLWS--HMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSG 155 (257)
T ss_pred ccccccchHHHHHhhceEEEecCcccCC--CCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCH
Confidence 235899999965433 4899999987532 222222234456778889888532 566779999
Q ss_pred cCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCC
Q 021362 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 212 G~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~ 277 (313)
||+||++||++++.++++|++|+|+..||. .+.+.|+++.+. .+++|||++++.. |++ |++++.|+
T Consensus 156 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 235 (257)
T PRK10619 156 GQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGA 235 (257)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999 445555555432 4799999999876 555 89999998
Q ss_pred chHHHH
Q 021362 278 PPDVAK 283 (313)
Q Consensus 278 ~~ev~~ 283 (313)
++++..
T Consensus 236 ~~~~~~ 241 (257)
T PRK10619 236 PEQLFG 241 (257)
T ss_pred HHHhhh
Confidence 887753
No 114
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-35 Score=263.31 Aligned_cols=184 Identities=16% Similarity=0.198 Sum_probs=148.2
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---CCeEEE
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDVATV 154 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~---~~~i~~ 154 (313)
|+++|+++.|++......+|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~i~~ 77 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER---PTSGEVLVDGEPVTGPGPDRGY 77 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECccccCcEEE
Confidence 4689999999861111129999999999999999999999999999999999999 9999999999653 356999
Q ss_pred EecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCceEEEE
Q 021362 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (313)
Q Consensus 155 v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~ 232 (313)
++|++..+. .+|+.||+.+....++.......+++.++++.++.. .++.+.+||||||||++||++++.+++++++
T Consensus 78 v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllL 155 (220)
T cd03293 78 VFQQDALLP--WLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLL 155 (220)
T ss_pred Eeccccccc--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999965433 479999998875544433223345677888888743 4567779999999999999999999999999
Q ss_pred cCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH
Q 021362 233 DGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 233 d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
|+|+..||. .+++.|+++.. ..+++|||++++..
T Consensus 156 DEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~ 197 (220)
T cd03293 156 DEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVF 197 (220)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHH
Confidence 999999999 55566666532 24799999998765
No 115
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-35 Score=245.31 Aligned_cols=196 Identities=17% Similarity=0.165 Sum_probs=169.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC---------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------- 147 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~--------- 147 (313)
.|+++|+++.||... +|.||+|+-+.||.+.++||||+|||||+|.|.-+.- |.+|+..+.|..
T Consensus 2 sirv~~in~~yg~~q----~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~---p~sg~l~ia~~~fd~s~~~~~ 74 (242)
T COG4161 2 SIQLNGINCFYGAHQ----ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPSD 74 (242)
T ss_pred ceEEcccccccccch----heeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC---CCCCeEEecccccccccCccH
Confidence 389999999999988 9999999999999999999999999999999999988 999999887643
Q ss_pred -----CCCeEEEEecCCCCCCcccCCcccChHHH-HHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchh
Q 021362 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 148 -----~~~~i~~v~qd~~~~~~~~ltv~e~~~~~-~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~i 219 (313)
.++.+|+|||. |++++ ++||.||+-.. .+..|.++.+...++.++|+++. ...++.+-.|||||+|||+|
T Consensus 75 k~i~~lr~~vgmvfqq-y~lwp-hltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvai 152 (242)
T COG4161 75 KAIRDLRRNVGMVFQQ-YNLWP-HLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAI 152 (242)
T ss_pred HHHHHHHHhhhhhhhh-hccCc-hhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHH
Confidence 23459999999 66654 79999998764 45678888888888999999988 45677777999999999999
Q ss_pred hhhhccCceEEEEcCCccccCh----hhHHHHHhhccce---EEEEcChHHHHH---HHh----hcccccCCchHH
Q 021362 220 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEK---WFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 220 a~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~~---i~vtHd~~~~~~---rv~----griv~~G~~~ev 281 (313)
|+|++..+.+|++|+|+.-||+ .+.+.|+++...+ ++|||..+.+.+ |++ |++++.|+..-+
T Consensus 153 aralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~f 228 (242)
T COG4161 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence 9999999999999999999999 4566667776665 599999999988 766 999999976544
No 116
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.8e-36 Score=267.76 Aligned_cols=198 Identities=12% Similarity=0.109 Sum_probs=158.1
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
|++|+++|+++.|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~ 75 (237)
T PRK11614 3 KVMLSFDKVSAHYGKIQ----ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR---ATSGRIVFDGKDITDWQTA 75 (237)
T ss_pred ccEEEEEeEEEeeCCce----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEecCCCCHH
Confidence 45899999999998765 9999999999999999999999999999999999999 9999999999653
Q ss_pred ---CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---cCCCccCCCCCCcCCCcchhhhh
Q 021362 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---NQGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ---~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---~~~~~~~~~LSgG~kqRv~ia~a 222 (313)
...++|++|+...++ .+|+.+|+.+..... ......+.+.++++.++ ...+.++.+|||||+||++||++
T Consensus 76 ~~~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~a 151 (237)
T PRK11614 76 KIMREAVAIVPEGRRVFS--RMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRA 151 (237)
T ss_pred HHHHhCEEEeccCcccCC--CCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHH
Confidence 234899999965443 479999998754221 11122334556666653 23455777999999999999999
Q ss_pred hccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++.++++|++|+|+..||. .+++.|+++.+. .|++|||++++.. |++ |+++..|+++++..
T Consensus 152 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred HHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 9999999999999999999 445555555432 3699999998876 554 89999999888753
No 117
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1.6e-35 Score=270.15 Aligned_cols=204 Identities=15% Similarity=0.123 Sum_probs=162.0
Q ss_pred EEEEccceEEccccc-----cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---
Q 021362 77 VVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~-----~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--- 148 (313)
||+++||++.|+... ....+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~ 78 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK---PAQGTVSFRGQDLYQL 78 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccc
Confidence 689999999996310 01239999999999999999999999999999999999999 9999999999653
Q ss_pred --------CCeEEEEecCCCCCCcccCCcccChHHHHHhc-CCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCc
Q 021362 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDP 216 (313)
Q Consensus 149 --------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqR 216 (313)
.+.++|++|++.....+.+|+.+|+.+..... +.......+++.++++.++.. .+.++.+|||||+||
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qr 158 (265)
T TIGR02769 79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQR 158 (265)
T ss_pred CHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHH
Confidence 23599999996322223579999997765432 222223445678888888853 356777999999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHH
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev 281 (313)
++||++++.++++|++|+|+..||. .+++.|+++.+ ..|++|||++.+.. |++ |++++.|+++++
T Consensus 159 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 238 (265)
T TIGR02769 159 INIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQL 238 (265)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHH
Confidence 9999999999999999999999999 46666666643 24799999999875 554 899999998887
Q ss_pred HH
Q 021362 282 AK 283 (313)
Q Consensus 282 ~~ 283 (313)
..
T Consensus 239 ~~ 240 (265)
T TIGR02769 239 LS 240 (265)
T ss_pred cC
Confidence 53
No 118
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-35 Score=267.04 Aligned_cols=201 Identities=13% Similarity=0.113 Sum_probs=158.7
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc--CCCCceeecCCCCC-----
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~--~p~~G~i~~~g~~~----- 148 (313)
|+|+++|+++.|++.. +|+++||+|++||+++|+||||||||||+++|+|++... .|++|+|.++|++.
T Consensus 5 ~~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 80 (253)
T PRK14242 5 PKMEARGLSFFYGDFQ----ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHV 80 (253)
T ss_pred cEEEEeeeEEEECCee----eecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccccc
Confidence 5799999999998765 999999999999999999999999999999999986300 14799999999653
Q ss_pred -----CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC-CccHHHHHHHHHHhhcC------CCccCCCCCCcCCCc
Q 021362 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP 216 (313)
Q Consensus 149 -----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~LSgG~kqR 216 (313)
.+.++|++|++.. +. .|+.||+.+.....+... ....+++.++++.++.. .+..+.+|||||+||
T Consensus 81 ~~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 157 (253)
T PRK14242 81 DVVELRRRVGMVFQKPNP-FP--KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQR 157 (253)
T ss_pred CHHHHhhcEEEEecCCCC-Cc--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHH
Confidence 2359999999643 33 499999988654433221 12345667778877642 355677999999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++||++++.++++|++|+|+..||. .+++.|+++.+ ..+++|||++++.. |++ |++++.|.++++..
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 237 (253)
T PRK14242 158 LCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFT 237 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 9999999999999999999999999 45555555533 24699999999876 554 89988898877643
No 119
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=2e-35 Score=268.49 Aligned_cols=201 Identities=16% Similarity=0.155 Sum_probs=160.5
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC-----CC-
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----PP- 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~-----~~- 149 (313)
++|+++|+++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+ ..
T Consensus 5 ~~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~i~~ 77 (258)
T PRK11701 5 PLLSVRGLTKLYGPRK----GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA---PDAGEVHYRMRDGQLRDLYA 77 (258)
T ss_pred ceEEEeeeEEEcCCce----eeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCcccccccccc
Confidence 3799999999998765 9999999999999999999999999999999999999 999999999975 21
Q ss_pred -----------CeEEEEecCCCCCCcccCCcccChHHHHHhcCCC-CCccHHHHHHHHHHhhcC---CCccCCCCCCcCC
Q 021362 150 -----------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVG 214 (313)
Q Consensus 150 -----------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~k 214 (313)
..++|++|++.......+++.+|+.+.....+.. ......++.++++.++.. .+..+.+|||||+
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~ 157 (258)
T PRK11701 78 LSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQ 157 (258)
T ss_pred CCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHH
Confidence 2489999996432333478888987654322211 112345567888888753 3567779999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCch
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ 279 (313)
||++||++++.++++|++|+|+..||. .+++.|+++.+ ..|++|||++++.. +++ |++++.|+++
T Consensus 158 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 237 (258)
T PRK11701 158 QRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTD 237 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999 44555555443 23699999999975 554 9999999888
Q ss_pred HHHH
Q 021362 280 DVAK 283 (313)
Q Consensus 280 ev~~ 283 (313)
++..
T Consensus 238 ~~~~ 241 (258)
T PRK11701 238 QVLD 241 (258)
T ss_pred HHhc
Confidence 7753
No 120
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.4e-35 Score=270.93 Aligned_cols=205 Identities=16% Similarity=0.144 Sum_probs=160.9
Q ss_pred cEEEEccceEEccccc-----cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-
Q 021362 76 PVVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP- 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~-----~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~- 149 (313)
+||+++||++.|+... +...+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~ 79 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGELLIDDHPLHF 79 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCC
Confidence 3699999999996321 11249999999999999999999999999999999999999 99999999986532
Q ss_pred -------CeEEEEecCCCCCCcccCCcccChHHHHHhc-CCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcch
Q 021362 150 -------DVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 150 -------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ 218 (313)
..++|++|++..+..+.+++.+++.+..... +.......+.+.++++.++.. .+.++.+|||||+||++
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~ 159 (267)
T PRK15112 80 GDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLG 159 (267)
T ss_pred CchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHH
Confidence 3589999996432333578888887755432 222222345677888888852 34566799999999999
Q ss_pred hhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 219 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 219 ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
||++++.++++|++|+|+..||. .+++.|.++.+ ..|++|||++++.. |++ |++++.|+++++..
T Consensus 160 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 239 (267)
T PRK15112 160 LARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLA 239 (267)
T ss_pred HHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhc
Confidence 99999999999999999999999 45556666543 24799999999876 554 89988898877754
No 121
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.8e-35 Score=263.41 Aligned_cols=187 Identities=17% Similarity=0.165 Sum_probs=145.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
+|+++|+++.|++......+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK---PTSGSIIFDGKDLLKLSRRLR 77 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccchhhH
Confidence 47899999999764101129999999999999999999999999999999999999 9999999998653
Q ss_pred ---CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCC-ccHHH-HHHHHHHhhcC---CCccCCCCCCcCCCcchhh
Q 021362 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLL-LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 149 ---~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~-~~~~~-~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia 220 (313)
.+.++|++|++.......+|+.+|+.+.....+.... ..... +.++++.++.. .+..+.+|||||+||++||
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 157 (228)
T cd03257 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIA 157 (228)
T ss_pred HHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHH
Confidence 2358999999732222358999999876544332111 11122 24677777752 3567779999999999999
Q ss_pred hhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH
Q 021362 221 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 221 ~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
++++.++++|++|+|+..||. .+++.|.++.+ ..|++|||++++..
T Consensus 158 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~ 211 (228)
T cd03257 158 RALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAK 211 (228)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 999999999999999999999 45556665543 24799999998875
No 122
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-35 Score=272.74 Aligned_cols=198 Identities=18% Similarity=0.168 Sum_probs=160.9
Q ss_pred EEEEccceEEccc-cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~-~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
||+++|+++.|++ .. +|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (275)
T PRK13639 1 ILETRDLKYSYPDGTE----ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK---PTSGEVLIKGEPIKYDKKSL 73 (275)
T ss_pred CEEEEEEEEEeCCCCe----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEECccccchH
Confidence 4889999999963 34 8999999999999999999999999999999999999 9999999999653
Q ss_pred ---CCeEEEEecCCC-CCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhh
Q 021362 149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ---~~~i~~v~qd~~-~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~a 222 (313)
...++|++|++. .++. .|+.||+.+.....+.......+++.++++.++. ..++++.+|||||+||++||++
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~lara 151 (275)
T PRK13639 74 LEVRKTVGIVFQNPDDQLFA--PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGI 151 (275)
T ss_pred HHHHhheEEEeeChhhhhcc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 234899999953 2232 6999999876443333222334567788888874 3566778999999999999999
Q ss_pred hccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++.++++|++|+|+..||. .+++.|.++.++ .+++|||++++.. |++ |++++.|+++++..
T Consensus 152 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 152 LAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999 455666665432 4799999999876 555 89999999888754
No 123
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-35 Score=265.65 Aligned_cols=195 Identities=14% Similarity=0.087 Sum_probs=158.8
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
|.+|+++|+++.|++.. +|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~ 73 (241)
T PRK14250 1 MNEIEFKEVSYSSFGKE----ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID---PTEGSILIDGVDIKTIDVI 73 (241)
T ss_pred CceEEEEeEEEEeCCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcChH
Confidence 45799999999998765 9999999999999999999999999999999999999 9999999999653
Q ss_pred --CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhh
Q 021362 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 --~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al 223 (313)
...++|++|++..+ . .|+.+|+.+.....+ ....++.++++.++.. .++++.+|||||+||++||+++
T Consensus 74 ~~~~~i~~~~q~~~~~-~--~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al 146 (241)
T PRK14250 74 DLRRKIGMVFQQPHLF-E--GTVKDNIEYGPMLKG----EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTL 146 (241)
T ss_pred HhhhcEEEEecCchhc-h--hhHHHHHhcchhhcC----cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHH
Confidence 24589999996543 2 599999876533221 2235677888888753 3567779999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+.++++|++|+|+..||. .+.+.|+++.+ ..+++|||++++.. |++ |+++..|++.++..
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (241)
T PRK14250 147 ANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221 (241)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhc
Confidence 999999999999999999 44455555532 24799999999876 554 88988898887743
No 124
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-35 Score=273.18 Aligned_cols=204 Identities=15% Similarity=0.180 Sum_probs=163.9
Q ss_pred cEEEEccceEEccccc--cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-----
Q 021362 76 PVVEARCMDEVYDALA--QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~--~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~----- 148 (313)
+||+++|+++.|++.. +...+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~~~ 79 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI---PSEGKVYVDGLDTSDEEN 79 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccccc
Confidence 4799999999997421 11239999999999999999999999999999999999999 9999999998653
Q ss_pred ----CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhh
Q 021362 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~a 222 (313)
.+.++|++|++..... ..++.+|+.+.....+.+.....+++.++++.++. ..++++.+|||||+||++||++
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~lara 158 (280)
T PRK13633 80 LWDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGI 158 (280)
T ss_pred HHHHhhheEEEecChhhhhc-cccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHH
Confidence 2358999999632222 25899999887554444333344567888888874 3466778999999999999999
Q ss_pred hccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
++.++++|++|+|+..||. .+++.|.++.+ .++++|||++++.. |++ |+++..|+++++..
T Consensus 159 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 159 LAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFK 233 (280)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999 56666666643 24799999999876 555 89999999988754
No 125
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-35 Score=266.91 Aligned_cols=198 Identities=10% Similarity=0.111 Sum_probs=158.3
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCceeecCCCCC---
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP--- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-----~~G~i~~~g~~~--- 148 (313)
+|+++|+++.|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 4 ~l~i~~v~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~---~~~~~~~~G~I~~~g~~~~~~ 76 (258)
T PRK14241 4 RIDVKDLNIYYGSFH----AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHE---VIPGARVEGEVLLDGEDLYGP 76 (258)
T ss_pred cEEEeeEEEEECCEe----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---cccCCCcceEEEECCEecccc
Confidence 699999999998766 9999999999999999999999999999999999986 5 699999998653
Q ss_pred -------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCC-CCCccHHHHHHHHHHhhc------CCCccCCCCCCcCC
Q 021362 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGVG 214 (313)
Q Consensus 149 -------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~------~~~~~~~~LSgG~k 214 (313)
.+.++|++|+...++ .+|+.+|+.+.....+. ......+++.++++.++. ..+..+.+|||||+
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 154 (258)
T PRK14241 77 GVDPVAVRRTIGMVFQRPNPFP--TMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQ 154 (258)
T ss_pred ccChHHHhcceEEEccccccCC--CCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHH
Confidence 135899999965443 47999999876544332 222233456777877764 23556779999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----------hccccc
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----------KRHIST 275 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----------griv~~ 275 (313)
||++||++++.++++|++|+|+..||. .+++.|.++.+ ..|++|||++++.. |++ |++++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 999999999999999999999999999 45555555533 24799999999876 442 788888
Q ss_pred CCchHHHH
Q 021362 276 GKPPDVAK 283 (313)
Q Consensus 276 G~~~ev~~ 283 (313)
|+++++..
T Consensus 235 ~~~~~~~~ 242 (258)
T PRK14241 235 DDTEKIFS 242 (258)
T ss_pred CCHHHHHh
Confidence 88877743
No 126
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-35 Score=298.73 Aligned_cols=205 Identities=16% Similarity=0.153 Sum_probs=165.3
Q ss_pred cEEEEccceEEccccc-------cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC
Q 021362 76 PVVEARCMDEVYDALA-------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~-------~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~ 148 (313)
++|+++||++.|+... ....+|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|+++|.+.
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~i 388 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE---SQGGEIIFNGQRI 388 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCcEEEECCEEC
Confidence 5899999999996210 01238999999999999999999999999999999999999 9999999998642
Q ss_pred -----------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCC-CCccHHHHHHHHHHhhcC---CCccCCCCCCcC
Q 021362 149 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV 213 (313)
Q Consensus 149 -----------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~ 213 (313)
.+.++|+||+++....+.+|+.+|+.+.....+.. .....+++.++|+.++.. .++++.+|||||
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGq 468 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQ 468 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHH
Confidence 23599999996422333589999998865444321 222345678899998853 467788999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCc
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKP 278 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~ 278 (313)
||||+||+|++.++++|++|+|+..||. .+++.|+++.++ .||||||++++.. |++ |++++.|++
T Consensus 469 rQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~ 548 (623)
T PRK10261 469 RQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPR 548 (623)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 9999999999999999999999999999 455556555432 4799999999987 655 999999999
Q ss_pred hHHHH
Q 021362 279 PDVAK 283 (313)
Q Consensus 279 ~ev~~ 283 (313)
+++..
T Consensus 549 ~~i~~ 553 (623)
T PRK10261 549 RAVFE 553 (623)
T ss_pred HHHhc
Confidence 88854
No 127
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-35 Score=266.90 Aligned_cols=202 Identities=10% Similarity=0.052 Sum_probs=159.6
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcc--cCCCCceeecCCCCC----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVKP---- 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~--~~p~~G~i~~~g~~~---- 148 (313)
..+|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++. ..|++|+|.++|.+.
T Consensus 11 ~~~l~~~~l~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~ 86 (260)
T PRK10744 11 PSKIQVRNLNFYYGKFH----ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK 86 (260)
T ss_pred CceEEEEEEEEEeCCeE----EeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc
Confidence 45799999999998755 99999999999999999999999999999999999840 014799999998653
Q ss_pred ------CCeEEEEecCCCCCCcccCCcccChHHHHHhc-CCCCCccHHHHHHHHHHhhcC------CCccCCCCCCcCCC
Q 021362 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~------~~~~~~~LSgG~kq 215 (313)
.+.++|++|++.. +. .|+.+|+.+....+ +.+.....+++.++++.++.. .+..+.+|||||+|
T Consensus 87 ~~~~~~~~~i~~~~q~~~~-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 163 (260)
T PRK10744 87 QDIALLRAKVGMVFQKPTP-FP--MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQ 163 (260)
T ss_pred cchHHHhcceEEEecCCcc-Cc--CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHH
Confidence 2359999999653 32 69999998765433 222222335677788887742 35567799999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
|++||++++.++++|++|+|+..||. .+.+.|+++.. ..|++|||++++.. |++ |++++.|+++++.
T Consensus 164 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 164 RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred HHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999 45555555533 24799999999865 555 8999999888775
Q ss_pred H
Q 021362 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 244 ~ 244 (260)
T PRK10744 244 T 244 (260)
T ss_pred h
Confidence 4
No 128
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-35 Score=267.63 Aligned_cols=199 Identities=12% Similarity=0.063 Sum_probs=159.2
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCceeecCCCCC-
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-----~~G~i~~~g~~~- 148 (313)
+++|+++||++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ | ++|+|+++|.+.
T Consensus 17 ~~~l~~~nl~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~I~~~g~~i~ 89 (267)
T PRK14235 17 EIKMRARDVSVFYGEKQ----ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMND---TIDGCRVTGKITLDGEDIY 89 (267)
T ss_pred CceEEEEeEEEEECCEE----EEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc---cccCCCCceEEEECCEECc
Confidence 35799999999998765 9999999999999999999999999999999999996 5 899999999653
Q ss_pred ---------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCC--CCccHHHHHHHHHHhhcC------CCccCCCCCC
Q 021362 149 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP--WTFNPLLLLNCLKNLRNQ------GSVYAPSFDH 211 (313)
Q Consensus 149 ---------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~------~~~~~~~LSg 211 (313)
...++|++|++..+ . .|+.||+.+....++.. .....+++.++++.++.. .+..+.+|||
T Consensus 90 ~~~~~~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg 166 (267)
T PRK14235 90 DPRLDVVELRARVGMVFQKPNPF-P--KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSG 166 (267)
T ss_pred ccccchHHHhhceEEEecCCCCC-C--CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCH
Confidence 23589999996533 3 49999998765433321 122245567788887752 2456779999
Q ss_pred cCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HHh----hcccccCCc
Q 021362 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKP 278 (313)
Q Consensus 212 G~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv~----griv~~G~~ 278 (313)
||+||++||++++.++++|++|+|+..||. .+.+.|+++.+. .+++|||++.+.. |++ |++++.|.+
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999 445555555332 4799999999876 554 899999988
Q ss_pred hHHHH
Q 021362 279 PDVAK 283 (313)
Q Consensus 279 ~ev~~ 283 (313)
+++..
T Consensus 247 ~~~~~ 251 (267)
T PRK14235 247 EKMFT 251 (267)
T ss_pred HHHHh
Confidence 77743
No 129
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-35 Score=298.66 Aligned_cols=205 Identities=17% Similarity=0.169 Sum_probs=165.3
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
+++|+++||++.|+...+...+|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~---p~~G~i~~~g~~~~~~~~~ 86 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE---QAGGLVQCDKMLLRRRSRQ 86 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCeEEEECCEEecccccc
Confidence 4589999999999642222349999999999999999999999999999999999999 9999999877411
Q ss_pred ----------------CCeEEEEecCCCCCCcccCCcccChHHHHHhc-CCCCCccHHHHHHHHHHhhcC-----CCccC
Q 021362 149 ----------------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ-----GSVYA 206 (313)
Q Consensus 149 ----------------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~-----~~~~~ 206 (313)
...++|++|++.....+.+|+.+|+.+..... +.+.....+++.++|+.++.. .+.++
T Consensus 87 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 166 (623)
T PRK10261 87 VIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYP 166 (623)
T ss_pred ccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCC
Confidence 13589999996321223589999999876542 443333456788899999863 35678
Q ss_pred CCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hc
Q 021362 207 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KR 271 (313)
Q Consensus 207 ~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----gr 271 (313)
.+|||||||||+||+|++.++++|++|+|+..||. .+++.|+++.++ .|+||||++++.. |++ |+
T Consensus 167 ~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~ 246 (623)
T PRK10261 167 HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGE 246 (623)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCe
Confidence 89999999999999999999999999999999999 566666666432 4799999999877 555 99
Q ss_pred ccccCCchHHH
Q 021362 272 HISTGKPPDVA 282 (313)
Q Consensus 272 iv~~G~~~ev~ 282 (313)
+++.|++.++.
T Consensus 247 i~~~g~~~~~~ 257 (623)
T PRK10261 247 AVETGSVEQIF 257 (623)
T ss_pred ecccCCHHHhh
Confidence 99999888775
No 130
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-35 Score=267.74 Aligned_cols=198 Identities=17% Similarity=0.192 Sum_probs=159.2
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
||+++|+++.|++.. +|+++||++++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 74 (255)
T PRK11231 2 TLRTENLTVGYGTKR----ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT---PQSGTVFLGDKPISMLSSRQL 74 (255)
T ss_pred EEEEEeEEEEECCEE----EEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCcEEEECCEEhHHCCHHHH
Confidence 699999999998766 9999999999999999999999999999999999999 9999999999652
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHH----hcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhh
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHA----RRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~----~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~a 222 (313)
.+.++|++|+...+. .+|+++|+.+... .++.......+++.++++.++. ..+.++.+|||||+||++||+|
T Consensus 75 ~~~i~~~~q~~~~~~--~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 152 (255)
T PRK11231 75 ARRLALLPQHHLTPE--GITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMV 152 (255)
T ss_pred hhheEEecccCCCCC--CccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHH
Confidence 235899999965433 4799999876421 1121122234567788888774 3466778999999999999999
Q ss_pred hccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++.++++|++|+|+..||. .+++.|+++.++ .+++|||++++.. |++ |+++..|+++++..
T Consensus 153 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 153 LAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999 445555554332 4799999999876 554 89888888877744
No 131
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-35 Score=268.50 Aligned_cols=188 Identities=14% Similarity=0.126 Sum_probs=153.7
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---CCeE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDVA 152 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~---~~~i 152 (313)
++|+++|+++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.+
T Consensus 11 ~~l~i~~l~~~~~~~~----il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~i 83 (257)
T PRK11247 11 TPLLLNAVSKRYGERT----VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET---PSAGELLAGTAPLAEAREDT 83 (257)
T ss_pred CcEEEEEEEEEECCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEHHHhhCce
Confidence 4699999999998766 9999999999999999999999999999999999999 9999999988652 3569
Q ss_pred EEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCceEE
Q 021362 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 153 ~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar~L 230 (313)
+|++|++..+. .+|+.||+.+... . ...+++.++++.++.. .+.++.+||||||||++||++++.++++|
T Consensus 84 ~~v~q~~~l~~--~~tv~enl~~~~~--~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~ll 155 (257)
T PRK11247 84 RLMFQDARLLP--WKKVIDNVGLGLK--G----QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLL 155 (257)
T ss_pred EEEecCccCCC--CCcHHHHHHhccc--c----hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999965443 4799999876421 1 1245677888888743 35677799999999999999999999999
Q ss_pred EEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCc
Q 021362 231 IVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKP 278 (313)
Q Consensus 231 i~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~ 278 (313)
++|+|+..||. .+.+.|.++.+ ..+++|||++++.. |++ |++++.|+.
T Consensus 156 lLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 218 (257)
T PRK11247 156 LLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTV 218 (257)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeccc
Confidence 99999999999 44555555532 24799999998765 554 788776654
No 132
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-35 Score=271.11 Aligned_cols=202 Identities=13% Similarity=0.067 Sum_probs=159.5
Q ss_pred EEEEccceEEcccccc-ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~-~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
.|+++|+++.|++... ...+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV---PTQGSVRVDDTLITSTSKNK 78 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccccccc
Confidence 4899999999975210 1238999999999999999999999999999999999999 99999999986531
Q ss_pred ------CeEEEEecCCC-CCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchh
Q 021362 150 ------DVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 150 ------~~i~~v~qd~~-~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~i 219 (313)
+.++|++|++. .++. .|+.+|+.+.....+.......+++.++++.++.. .++++.+||||||||++|
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~l 156 (280)
T PRK13649 79 DIKQIRKKVGLVFQFPESQLFE--ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAI 156 (280)
T ss_pred CHHHHHhheEEEeeChhhhhcc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHH
Confidence 35899999952 2332 59999998765444332222334567788888753 356777999999999999
Q ss_pred hhhhccCceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 220 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 220 a~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
|++++.++++|++|+|+..||. .+++.|.++.+ .+|++|||++++.. |++ |++++.|+++++..
T Consensus 157 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 157 AGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999 45555555543 24699999998866 554 89988999888754
No 133
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-35 Score=266.71 Aligned_cols=202 Identities=11% Similarity=0.064 Sum_probs=158.9
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc--ccCCCCceeecCCCCCC---
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASSFDSQVKPP--- 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~--~~~p~~G~i~~~g~~~~--- 149 (313)
+++|+++|+++.|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ ..+|++|+|.++|.+..
T Consensus 10 ~~~l~i~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~ 85 (259)
T PRK14274 10 QEVYQINGMNLWYGQHH----ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85 (259)
T ss_pred CceEEEeeEEEEECCee----eEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccc
Confidence 35899999999998765 9999999999999999999999999999999999986 11126999999986531
Q ss_pred -------CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC-CccHHHHHHHHHHhhcC------CCccCCCCCCcCCC
Q 021362 150 -------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (313)
Q Consensus 150 -------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~LSgG~kq 215 (313)
..++|++|++..+ . .|++||+.+.....+... ....+++.++++.++.. .+..+.+|||||+|
T Consensus 86 ~~~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 86 VDLVELRKNIGMVFQKGNPF-P--QSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQ 162 (259)
T ss_pred cCHHHHhhceEEEecCCccc-c--cCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHH
Confidence 3489999996543 3 499999987654433221 12234566777777642 35567799999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
|++||++++.++++|++|+|+..||. .+++.|.++.. ..+++|||++.+.. |++ |++++.|+++++.
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999 45555555533 24799999998876 554 8999999988875
Q ss_pred H
Q 021362 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 243 ~ 243 (259)
T PRK14274 243 S 243 (259)
T ss_pred h
Confidence 4
No 134
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.6e-35 Score=268.17 Aligned_cols=197 Identities=16% Similarity=0.156 Sum_probs=158.4
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 148 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--------- 148 (313)
|+++||++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~~ 73 (252)
T TIGR03005 1 VRFSDVTKRFGILT----VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP---IDEGQIQVEGEQLYHMPGRNGP 73 (252)
T ss_pred CEEEEEEEEeCCee----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccccccccc
Confidence 47899999998765 9999999999999999999999999999999999999 9999999998643
Q ss_pred ------------CCeEEEEecCCCCCCcccCCcccChHHHHH-hcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcC
Q 021362 149 ------------PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGV 213 (313)
Q Consensus 149 ------------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~ 213 (313)
.+.++|++|++..++ .+|+.+|+.+... ..+.......+.+.++++.++. ..+..+.+|||||
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~ 151 (252)
T TIGR03005 74 LVPADEKHLRQMRNKIGMVFQSFNLFP--HKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQ 151 (252)
T ss_pred ccccchhHHHHHhhCeEEEecCcccCC--CCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHH
Confidence 235899999965443 4799999987532 2222222234556788888874 3355677999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCc
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKP 278 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~ 278 (313)
+||++||++++.++++|++|+|+..||. .+++.|+++.+ ..|++|||++++.. |++ |++++.|++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 231 (252)
T TIGR03005 152 QQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKP 231 (252)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999998 45556666543 24799999999865 554 999998988
Q ss_pred hHHHH
Q 021362 279 PDVAK 283 (313)
Q Consensus 279 ~ev~~ 283 (313)
+++..
T Consensus 232 ~~~~~ 236 (252)
T TIGR03005 232 DEIFR 236 (252)
T ss_pred HHHhc
Confidence 77753
No 135
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-35 Score=269.98 Aligned_cols=199 Identities=16% Similarity=0.173 Sum_probs=160.2
Q ss_pred cEEEEccceEEcc--ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-----
Q 021362 76 PVVEARCMDEVYD--ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~--~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~----- 148 (313)
++|+++|+++.|+ +.. +|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 6 ~~l~~~nl~~~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~ 78 (271)
T PRK13632 6 VMIKVENVSFSYPNSENN----ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK---PQSGEIKIDGITISKENL 78 (271)
T ss_pred eEEEEEeEEEEcCCCCcc----ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEecCcCCH
Confidence 4799999999996 334 9999999999999999999999999999999999999 9999999999653
Q ss_pred ---CCeEEEEecCCC-CCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhh
Q 021362 149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ---~~~i~~v~qd~~-~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~a 222 (313)
.+.++|++|++. .++ .+|+.||+.+.....+........++.++++.++. ..+..+.+|||||+||++||+|
T Consensus 79 ~~~~~~i~~v~q~~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lara 156 (271)
T PRK13632 79 KEIRKKIGIIFQNPDNQFI--GATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASV 156 (271)
T ss_pred HHHhcceEEEEeCHHHhcC--cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHH
Confidence 235899999963 233 37999999876543333222234457788888874 3566778999999999999999
Q ss_pred hccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
++.++++|++|+|+..||. .+++.|+++.+ ..+++|||++++.. +++ |+++..|+++++..
T Consensus 157 l~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 157 LALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999 55666666542 24699999998754 444 88888888877643
No 136
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-35 Score=265.05 Aligned_cols=198 Identities=13% Similarity=0.065 Sum_probs=159.5
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCceeecCCCCC--
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP-- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-----~~G~i~~~g~~~-- 148 (313)
++|+++|+++.|++.. +|+|+||+|++||+++|+|+||||||||+++|+|+.+ | ++|+|.++|.+.
T Consensus 3 ~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~~~~~~G~i~~~g~~i~~ 75 (251)
T PRK14270 3 IKMESKNLNLWYGEKQ----ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMND---LISNVKIEGEVLLDGKNIYD 75 (251)
T ss_pred cEEEEEEeEEEECCee----eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---cccCCCCccEEEECCEeccc
Confidence 4799999999998765 9999999999999999999999999999999999986 5 799999998653
Q ss_pred --------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCC-CCccHHHHHHHHHHhhcC------CCccCCCCCCcC
Q 021362 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 213 (313)
Q Consensus 149 --------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~------~~~~~~~LSgG~ 213 (313)
...++|++|++.. +. +|+.+|+.+.....+.. ......++.++++.++.. .+.++.+||+||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 152 (251)
T PRK14270 76 KDVDVVELRKRVGMVFQKPNP-FP--MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQ 152 (251)
T ss_pred ccccHHHHHhheEEEecCCCc-CC--CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHH
Confidence 2348999999653 32 79999998765444331 122234566777777632 355677999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HHh----hcccccCCchH
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv~----griv~~G~~~e 280 (313)
+||++||++++.++++|++|+|+..||. .+++.|+++.+. .+++|||++++.. |++ |++++.|++++
T Consensus 153 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (251)
T PRK14270 153 QQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEK 232 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHH
Confidence 9999999999999999999999999999 455555555432 4799999998876 554 89999999888
Q ss_pred HHH
Q 021362 281 VAK 283 (313)
Q Consensus 281 v~~ 283 (313)
+..
T Consensus 233 ~~~ 235 (251)
T PRK14270 233 IFL 235 (251)
T ss_pred Hhc
Confidence 754
No 137
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=6.2e-35 Score=264.72 Aligned_cols=197 Identities=13% Similarity=0.134 Sum_probs=159.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC----CCceeecCCCCC----
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKASSFDSQVKP---- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p----~~G~i~~~g~~~---- 148 (313)
+|+++|+++.| +.. +|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~-~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~~~G~i~~~g~~i~~~~ 75 (254)
T PRK10418 4 QIELRNIALQA-AQP----LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP---AGVRQTAGRVLLDGKPVAPCA 75 (254)
T ss_pred EEEEeCeEEEe-ccc----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCcCCEEEECCeeccccc
Confidence 69999999999 444 8999999999999999999999999999999999998 8 999999999753
Q ss_pred --CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCC-----CccCCCCCCcCCCcchhhh
Q 021362 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-----SVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 149 --~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-----~~~~~~LSgG~kqRv~ia~ 221 (313)
.+.++|++|++...+.+.+++.+++.+.....+.. ...+++.++++.++... +..+.+|||||+||++||+
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~lar 153 (254)
T PRK10418 76 LRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKP--ADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIAL 153 (254)
T ss_pred cccceEEEEecCCccccCccccHHHHHHHHHHHcCCC--hHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHH
Confidence 24599999996432333467878876654333322 23466788888888543 5677899999999999999
Q ss_pred hhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+++.++++|++|+|+..||. .+++.|+++.+ ..+++||+++++.. |++ |+++..|+++++..
T Consensus 154 al~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 154 ALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred HHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999998 45666666643 24699999999875 554 89999998887743
No 138
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.7e-35 Score=259.63 Aligned_cols=179 Identities=13% Similarity=0.120 Sum_probs=144.9
Q ss_pred EEccceEEccc--cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 79 EARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 79 ~~~~l~~~y~~--~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
+++|+++.|++ .. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 1 ~~~~l~~~~~~~~~~----il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 73 (211)
T cd03225 1 ELKNLSFSYPDGARP----ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG---PTSGEVLVDGKDLTKLSLKEL 73 (211)
T ss_pred CceeEEEecCCCCee----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEcccCCHHHH
Confidence 36899999986 55 9999999999999999999999999999999999999 99999999986532
Q ss_pred -CeEEEEecCCCC-CCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhcc
Q 021362 150 -DVATVLPMDGFH-LYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 150 -~~i~~v~qd~~~-~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~ 225 (313)
+.++|++|++.. ++ .+|+.+|+.+.....+........++.++++.++.. .++++.+|||||+||++||+|++.
T Consensus 74 ~~~i~~~~q~~~~~~~--~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~ 151 (211)
T cd03225 74 RRKVGLVFQNPDDQFF--GPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAM 151 (211)
T ss_pred HhhceEEecChhhhcC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 358999999632 33 379999998765433322222345677788888743 456778999999999999999999
Q ss_pred CceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH
Q 021362 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 226 ~ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
++++|++|+|+..||. .+++.|.++.+ ..+++|||++++..
T Consensus 152 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~ 199 (211)
T cd03225 152 DPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLE 199 (211)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 9999999999999999 45566666544 24799999998764
No 139
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-35 Score=253.78 Aligned_cols=200 Identities=17% Similarity=0.181 Sum_probs=167.9
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
||+++|++++..++. +|+++||++.+||+++|+||||||||||+|.|+|.+. |++|++.++|.+..
T Consensus 1 mi~a~nls~~~~Gr~----ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~---p~~G~v~~~g~~l~~~~~~~l 73 (259)
T COG4559 1 MIRAENLSYSLAGRR----LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS---PDSGEVTLNGVPLNSWPPEEL 73 (259)
T ss_pred CeeeeeeEEEeecce----eccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC---CCCCeEeeCCcChhhCCHHHH
Confidence 589999999999988 9999999999999999999999999999999999999 99999999998743
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCC--ccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhc
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT--FNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~--~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
+.-++++|+...-++ +||+|-+.++..-++...+ ++...+.++|...+ ....+.+.+|||||||||.+|+.++
T Consensus 74 A~~raVlpQ~s~laFp--Ftv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLa 151 (259)
T COG4559 74 ARHRAVLPQNSSLAFP--FTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLA 151 (259)
T ss_pred HHHhhhcccCcccccc--eEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHH
Confidence 235789999665554 7999999988655543333 45555788888887 4567788999999999999999987
Q ss_pred c------CceEEEEcCCccccCh----hhHHHHHhhccce---EEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 225 L------QHKVVIVDGNYLFLDG----GVWKDVSSMFDEK---WFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 225 ~------~ar~Li~d~~~lllDE----~~~~~l~~l~~~~---i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
. ..|+|++|+|+.-||- ..++..+++.+++ +.|-||++.+.. |++ ||+++.|+|++++..
T Consensus 152 Ql~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~ 231 (259)
T COG4559 152 QLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTD 231 (259)
T ss_pred HccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCH
Confidence 5 4468888888888888 6677777887763 699999999988 776 999999999998754
Q ss_pred H
Q 021362 285 R 285 (313)
Q Consensus 285 ~ 285 (313)
.
T Consensus 232 E 232 (259)
T COG4559 232 E 232 (259)
T ss_pred H
Confidence 3
No 140
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-35 Score=278.95 Aligned_cols=190 Identities=15% Similarity=0.115 Sum_probs=157.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
||++ ||+|.|++.. + |+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~-~l~k~~~~~~-----~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~~~~~~~~~~ 70 (352)
T PRK11144 1 MLEL-NFKQQLGDLC-----L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR---PQKGRIVLNGRVLFDAEKGIC 70 (352)
T ss_pred CeEE-EEEEEeCCEE-----E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccccccc
Confidence 4788 9999998643 3 8999999999999999999999999999999999 9999999998542
Q ss_pred ----CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhh
Q 021362 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~a 222 (313)
.+.++|++|+...++ .+|+.+|+.+... ....+++.++++.++.. .++++.+||||||||++||++
T Consensus 71 ~~~~~~~i~~v~q~~~l~~--~~tv~enl~~~~~------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalara 142 (352)
T PRK11144 71 LPPEKRRIGYVFQDARLFP--HYKVRGNLRYGMA------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRA 142 (352)
T ss_pred cchhhCCEEEEcCCcccCC--CCcHHHHHHhhhh------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHH
Confidence 245899999965443 5899999987542 12345678889988843 466778999999999999999
Q ss_pred hccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
++.++++|++|+|+..||. .+++.|+++.++ .++||||++++.. |++ |+++..|+++++...
T Consensus 143 L~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~ 219 (352)
T PRK11144 143 LLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWAS 219 (352)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhC
Confidence 9999999999999999999 455566665432 4799999999876 555 999999999888653
No 141
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-35 Score=266.08 Aligned_cols=197 Identities=16% Similarity=0.151 Sum_probs=158.4
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
+|+++|+++.|++.. +|+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 5 ~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 77 (255)
T PRK11300 5 LLSVSGLMMRFGGLL----AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK---PTGGTILLRGQHIEGLPGHQI 77 (255)
T ss_pred eEEEeeEEEEECCEE----EEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCcceEEECCEECCCCCHHHH
Confidence 799999999998766 9999999999999999999999999999999999999 99999999996532
Q ss_pred --CeEEEEecCCCCCCcccCCcccChHHHHHh----------cCCC---C--CccHHHHHHHHHHhhc--CCCccCCCCC
Q 021362 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHAR----------RGAP---W--TFNPLLLLNCLKNLRN--QGSVYAPSFD 210 (313)
Q Consensus 150 --~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~----------~~~~---~--~~~~~~~~~~l~~l~~--~~~~~~~~LS 210 (313)
..++|++|++..++ .+|+.+|+.+.... .+.+ . ......+.++++.++. ..+.++.+||
T Consensus 78 ~~~~i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS 155 (255)
T PRK11300 78 ARMGVVRTFQHVRLFR--EMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLA 155 (255)
T ss_pred HhcCeEEeccCcccCC--CCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCC
Confidence 23788999965443 48999999875321 1100 0 1122456777888774 3466778999
Q ss_pred CcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hccccc
Q 021362 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHIST 275 (313)
Q Consensus 211 gG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~ 275 (313)
|||+||++||++++.++++|++|+|+..||. .+++.|.++.++ .|++|||++++.. +++ |+++..
T Consensus 156 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 235 (255)
T PRK11300 156 YGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLAN 235 (255)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEec
Confidence 9999999999999999999999999999999 455666655432 4799999999876 554 899988
Q ss_pred CCchHHH
Q 021362 276 GKPPDVA 282 (313)
Q Consensus 276 G~~~ev~ 282 (313)
|+++++.
T Consensus 236 ~~~~~~~ 242 (255)
T PRK11300 236 GTPEEIR 242 (255)
T ss_pred CCHHHHh
Confidence 9887764
No 142
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-35 Score=263.79 Aligned_cols=199 Identities=12% Similarity=0.141 Sum_probs=158.7
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCceeecCCCCC-
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-----~~G~i~~~g~~~- 148 (313)
|++|+++|+++.|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---~~~~~~~~G~i~i~g~~~~ 73 (250)
T PRK14262 1 EPIIEIENFSAYYGEKK----AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMND---HIPGFRVEGKIYFKGQDIY 73 (250)
T ss_pred CceEEEEeeEEEeCCce----eEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhcccc---CCCCCCcceEEEECCEEcc
Confidence 45899999999998665 9999999999999999999999999999999999986 5 899999998653
Q ss_pred ---------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC-CccHHHHHHHHHHhhcC------CCccCCCCCCc
Q 021362 149 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHG 212 (313)
Q Consensus 149 ---------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~LSgG 212 (313)
...++|++|++.. +. +|+.+|+.+.....+... ....+.+.++++.++.. .+..+.+||||
T Consensus 74 ~~~~~~~~~~~~i~~~~q~~~~-~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 150 (250)
T PRK14262 74 DPQLDVTEYRKKVGMVFQKPTP-FP--MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGG 150 (250)
T ss_pred cchhhHHHhhhhEEEEecCCcc-Cc--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHH
Confidence 2359999999653 32 699999987654333221 12334466777777642 35567799999
Q ss_pred CCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCch
Q 021362 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 213 ~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~ 279 (313)
|+||++||++++.++++|++|+|+..||. .+++.|.++.. ..+++|||++.+.. |++ |+++..|+++
T Consensus 151 q~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14262 151 QQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTR 230 (250)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999 45555555533 24699999998766 554 8999999888
Q ss_pred HHHH
Q 021362 280 DVAK 283 (313)
Q Consensus 280 ev~~ 283 (313)
++..
T Consensus 231 ~~~~ 234 (250)
T PRK14262 231 EIVE 234 (250)
T ss_pred HHHh
Confidence 7754
No 143
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-35 Score=292.32 Aligned_cols=198 Identities=16% Similarity=0.156 Sum_probs=161.5
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC--CCceeecCCCCC-----
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p--~~G~i~~~g~~~----- 148 (313)
+||+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ | ++|+|.++|.+.
T Consensus 4 ~~l~~~nl~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~G~i~~~g~~~~~~~~ 76 (506)
T PRK13549 4 YLLEMKNITKTFGGVK----ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP---HGTYEGEIIFEGEELQASNI 76 (506)
T ss_pred ceEEEeeeEEEeCCeE----eecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCCH
Confidence 5799999999998766 9999999999999999999999999999999999997 7 799999998653
Q ss_pred ----CCeEEEEecCCCCCCcccCCcccChHHHHHhc--C-CCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchh
Q 021362 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--G-APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 149 ----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~--~-~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~i 219 (313)
.+.++|++|++..+. .+|+.||+.+....+ + .......+++.++++.++. ..++++.+||||||||++|
T Consensus 77 ~~~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 77 RDTERAGIAIIHQELALVK--ELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred HHHHHCCeEEEEeccccCC--CCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHH
Confidence 245899999965433 489999998764322 1 1112234567888998884 3466778999999999999
Q ss_pred hhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 220 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 220 a~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
|++++.++++|++|+|+..||+ .+++.|.++.++ .|++|||++++.. |++ |+++..|+++++.
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 9999999999999999999999 455666555432 4799999999876 555 8999988887764
No 144
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-35 Score=267.78 Aligned_cols=199 Identities=16% Similarity=0.111 Sum_probs=160.0
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
++|+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 10 ~~l~i~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 82 (265)
T PRK10575 10 TTFALRNVSFRVPGRT----LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP---PSEGEILLDAQPLESWSSKA 82 (265)
T ss_pred ceEEEeeEEEEECCEE----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEehhhCCHHH
Confidence 4799999999998765 9999999999999999999999999999999999999 9999999999653
Q ss_pred -CCeEEEEecCCCCCCcccCCcccChHHHHHh-cC---CCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhh
Q 021362 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RG---APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 149 -~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~-~~---~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~ 221 (313)
.+.++|++|+...++ .+|+.+|+.+.... .+ .......+++.++++.++. ..+.++.+|||||+||++||+
T Consensus 83 ~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar 160 (265)
T PRK10575 83 FARKVAYLPQQLPAAE--GMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAM 160 (265)
T ss_pred HhhheEEeccCCCCCC--CccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHH
Confidence 235899999854433 47999998764321 11 1112234567788888874 346677899999999999999
Q ss_pred hhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+++.++++|++|+|+..||. .+++.|.++.+ ..+++|||++++.. |++ |++++.|+++++..
T Consensus 161 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 161 LVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 99999999999999999999 45566666542 24799999999876 554 89988898877643
No 145
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-35 Score=263.33 Aligned_cols=200 Identities=13% Similarity=0.103 Sum_probs=158.5
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
+++++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++...|++|+|.++|++.
T Consensus 2 ~~~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~ 77 (246)
T PRK14269 2 IAKTTNLNLFYGKKQ----ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77 (246)
T ss_pred ceeeeeeEEEECCEe----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHH
Confidence 589999999998765 99999999999999999999999999999999999741116899999999763
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCC--CCccHHHHHHHHHHhhcC------CCccCCCCCCcCCCcchhh
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP--WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~------~~~~~~~LSgG~kqRv~ia 220 (313)
...++|++|++..+ . .|+.||+.+....++.. .....+++.++++.++.. .+..+.+|||||+||+++|
T Consensus 78 ~~~i~~~~q~~~l~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 154 (246)
T PRK14269 78 RKNVGMVFQQPNVF-V--KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIA 154 (246)
T ss_pred hhhEEEEecCCccc-c--ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHH
Confidence 23589999996543 3 59999998765443321 122344567788887752 3456779999999999999
Q ss_pred hhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 221 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 221 ~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++++.+++++++|+|+..||. .+.+.|.++... .+++|||++++.. |++ |++++.|++.++..
T Consensus 155 ral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 155 RALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999 445555554322 3799999998876 554 99999998887743
No 146
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-35 Score=263.29 Aligned_cols=198 Identities=16% Similarity=0.139 Sum_probs=157.6
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh--cccCC---CCceeecCCCCC--
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWP---QKASSFDSQVKP-- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~--~~~~p---~~G~i~~~g~~~-- 148 (313)
++|+++|+++.|++.. +|+++||+|++||+++|+||||||||||+++|+|+. . | ++|+|.++|.+.
T Consensus 4 ~~l~~~~l~~~~~~~~----~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---p~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14239 4 PILQVSDLSVYYNKKK----ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLN---PEVTITGSIVYNGHNIYS 76 (252)
T ss_pred ceEEEEeeEEEECCee----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccC---CCCCccceEEECCEECcC
Confidence 4799999999998765 999999999999999999999999999999999984 4 5 599999998653
Q ss_pred --------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCC-ccHHHHHHHHHHhhc------CCCccCCCCCCcC
Q 021362 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFDHGV 213 (313)
Q Consensus 149 --------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~------~~~~~~~~LSgG~ 213 (313)
...++|++|++.. +. +|+.||+.+.....+.... ...+.+.++++.++. ..+..+.+||+||
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 153 (252)
T PRK14239 77 PRTDTVDLRKEIGMVFQQPNP-FP--MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQ 153 (252)
T ss_pred cccchHhhhhcEEEEecCCcc-Cc--CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHH
Confidence 2359999999653 33 6999999876544333221 123456667777763 2356777999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchH
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~e 280 (313)
+||++||++++.++++|++|+|+..||. .+++.|+++.. ..+++|||++++.. |++ |++++.|++.+
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T PRK14239 154 QQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQ 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999 44555555432 24799999998876 555 89999999888
Q ss_pred HHH
Q 021362 281 VAK 283 (313)
Q Consensus 281 v~~ 283 (313)
+..
T Consensus 234 ~~~ 236 (252)
T PRK14239 234 MFM 236 (252)
T ss_pred HHh
Confidence 754
No 147
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-35 Score=271.04 Aligned_cols=201 Identities=15% Similarity=0.182 Sum_probs=161.9
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCC---ceeecCCCCCC----
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---ASSFDSQVKPP---- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~---G~i~~~g~~~~---- 149 (313)
+|+++|+++.|++.. ..+|+++||+|++||+++|+||||||||||+++|+|+++ |++ |+|.++|.+..
T Consensus 5 ~l~i~~l~~~~~~~~--~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~---p~~g~~G~i~i~g~~~~~~~~ 79 (282)
T PRK13640 5 IVEFKHVSFTYPDSK--KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL---PDDNPNSKITVDGITLTAKTV 79 (282)
T ss_pred eEEEEEEEEEcCCCC--ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC---CCCCCCcEEEECCEECCcCCH
Confidence 699999999996421 128999999999999999999999999999999999998 987 89999997642
Q ss_pred ----CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhh
Q 021362 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 150 ----~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al 223 (313)
..++|++|++...+. ..|+.||+.+.....+...+...+++.++++.++.. .+.++.+|||||+||++||+++
T Consensus 80 ~~~~~~ig~v~q~~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral 158 (282)
T PRK13640 80 WDIREKVGIVFQNPDNQFV-GATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGIL 158 (282)
T ss_pred HHHHhheEEEEECHHHhhc-cCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 358999999632222 379999998765444433333345677888888843 4667789999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
+.++++|++|+|+..||. .+++.|+++.+ .++++|||++++.. |++ |++++.|+++++..
T Consensus 159 ~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 159 AVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999 55666666543 24699999999855 544 99999999888754
No 148
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2e-35 Score=292.20 Aligned_cols=199 Identities=17% Similarity=0.182 Sum_probs=161.0
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
+||+++|+++.|++.. +|+|+||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 3 ~~i~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~ 75 (501)
T PRK10762 3 ALLQLKGIDKAFPGVK----ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT---RDAGSILYLGKEVTFNGPKS 75 (501)
T ss_pred ceEEEeeeEEEeCCeE----EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence 3799999999998766 9999999999999999999999999999999999999 9999999998653
Q ss_pred --CCeEEEEecCCCCCCcccCCcccChHHHHHhc---C-CCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhh
Q 021362 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR---G-APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 149 --~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~---~-~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia 220 (313)
.+.++|++|++..+. .+|++||+.++...+ + .......+++.++++.++.. .++++.+||||||||++||
T Consensus 76 ~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 76 SQEAGIGIIHQELNLIP--QLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred HHhCCEEEEEcchhccC--CCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHH
Confidence 235899999964433 489999998764322 1 11112235677888888843 4667789999999999999
Q ss_pred hhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 221 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 221 ~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+|++.++++|++|+|+..||. .+++.|+++.+. .|++|||++++.. |++ |+++..|+++++..
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTE 230 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCH
Confidence 999999999999999999999 455555555432 4799999999876 555 89988888877643
No 149
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=2.8e-35 Score=259.71 Aligned_cols=180 Identities=17% Similarity=0.182 Sum_probs=146.4
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 148 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--------- 148 (313)
|+++|+++.|++.. +|+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~----~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (213)
T cd03262 1 IEIKNLHKSFGDFH----VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE---PDSGTIIIDGLKLTDDKKNINE 73 (213)
T ss_pred CEEEEEEEEECCeE----eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccchhHHH
Confidence 46899999998766 9999999999999999999999999999999999999 9999999998653
Q ss_pred -CCeEEEEecCCCCCCcccCCcccChHHHHH-hcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhc
Q 021362 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 -~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
.+.++|++|++..++ .+|+.||+.+... .++.......+++.++++.++.. .++.+.+|||||+||++||++++
T Consensus 74 ~~~~i~~~~q~~~~~~--~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 151 (213)
T cd03262 74 LRQKVGMVFQQFNLFP--HLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA 151 (213)
T ss_pred HHhcceEEecccccCC--CCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHh
Confidence 235899999975443 4799999987643 22322222345667788888743 46677899999999999999999
Q ss_pred cCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH
Q 021362 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
.++++|++|+|+..||. .+++.|+++.+. .|++|||++++..
T Consensus 152 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~ 200 (213)
T cd03262 152 MNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFARE 200 (213)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 99999999999999998 455666655432 4699999998864
No 150
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=3.4e-35 Score=259.40 Aligned_cols=180 Identities=16% Similarity=0.075 Sum_probs=146.4
Q ss_pred EEEccceEEccc-cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 78 l~~~~l~~~y~~-~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
|+++|+++.|++ .. +|+|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~~~~----~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~ 73 (214)
T cd03292 1 IEFINVTKTYPNGTA----ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL---PTSGTIRVNGQDVSDLRGRAI 73 (214)
T ss_pred CEEEEEEEEeCCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcccCCHHHH
Confidence 468999999964 34 9999999999999999999999999999999999999 99999999986532
Q ss_pred ----CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhh
Q 021362 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 150 ----~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al 223 (313)
+.++|++|++..++ .+|+.||+.+....++.......+++.++++.++. ..+.++.+|||||+||++||+++
T Consensus 74 ~~~~~~i~~v~q~~~~~~--~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 151 (214)
T cd03292 74 PYLRRKIGVVFQDFRLLP--DRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAI 151 (214)
T ss_pred HHHHHheEEEecCchhcc--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHH
Confidence 35899999965443 47999999887554443322334567788888774 34566779999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
+.+++++++|+|+..||. .+.+.|+++.+. .|++|||++++..
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~ 201 (214)
T cd03292 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDT 201 (214)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 999999999999999998 455556655432 4799999998864
No 151
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-35 Score=261.56 Aligned_cols=197 Identities=16% Similarity=0.122 Sum_probs=157.2
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------C
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------D 150 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------~ 150 (313)
||+++||++.|++.. .++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.. .
T Consensus 1 ~l~~~~l~~~~~~~~------~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 71 (232)
T PRK10771 1 MLKLTDITWLYHHLP------MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT---PASGSLTLNGQDHTTTPPSRR 71 (232)
T ss_pred CeEEEEEEEEECCcc------ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCeecCcCChhhc
Confidence 488999999997532 38999999999999999999999999999999999 99999999997532 3
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCce
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar 228 (313)
.++|++|++..+. .+|+.||+.+.............+++.++++.++. ..++++.+|||||+||++||++++.+++
T Consensus 72 ~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 149 (232)
T PRK10771 72 PVSMLFQENNLFS--HLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQP 149 (232)
T ss_pred cEEEEeccccccc--CCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 5899999965443 47999999765321101112234567888888874 3466777999999999999999999999
Q ss_pred EEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 229 VVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 229 ~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
++++|+|+..||. .+++.|.++.+ ..|++|||++++.. |++ |++++.|+++++...
T Consensus 150 lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 150 ILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999 45566666543 24799999999865 555 899889988777543
No 152
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=267.27 Aligned_cols=201 Identities=11% Similarity=0.078 Sum_probs=159.8
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc--CCCCceeecCCCCC----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP---- 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~--~p~~G~i~~~g~~~---- 148 (313)
.++|+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++.. .|++|+|.++|.+.
T Consensus 37 ~~~l~i~~l~~~~~~~~----il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~ 112 (285)
T PRK14254 37 ETVIEARDLNVFYGDEQ----ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDAD 112 (285)
T ss_pred CceEEEEEEEEEECCEe----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence 35799999999998765 999999999999999999999999999999999998510 04899999998653
Q ss_pred ------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC------CCccCCCCCCcCCCc
Q 021362 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP 216 (313)
Q Consensus 149 ------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~------~~~~~~~LSgG~kqR 216 (313)
.+.++|++|++.. +. .++.||+.+.....+.+. ...+++.++++.++.. .+.++.+||||||||
T Consensus 113 ~~~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qr 188 (285)
T PRK14254 113 VDPVALRRRIGMVFQKPNP-FP--KSIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQR 188 (285)
T ss_pred cchHhhhccEEEEecCCcc-Cc--CCHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHH
Confidence 2358999999643 33 499999987655444322 2345677888887642 356777999999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HH-h----hcccccCCchHHH
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RV-L----KRHISTGKPPDVA 282 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv-~----griv~~G~~~ev~ 282 (313)
++||++++.++++|++|+|+..||. .+++.|+++.++ .|++|||++++.. |+ + |++++.|++.++.
T Consensus 189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 9999999999999999999999999 455566665433 4799999999876 53 2 8888888887764
Q ss_pred H
Q 021362 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 269 ~ 269 (285)
T PRK14254 269 E 269 (285)
T ss_pred h
Confidence 3
No 153
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-35 Score=266.87 Aligned_cols=199 Identities=13% Similarity=0.154 Sum_probs=160.6
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
.+|+++|+++.|++.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 6 ~~l~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~ 78 (265)
T PRK10253 6 ARLRGEQLTLGYGKYT----VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT---PAHGHVWLDGEHIQHYASKE 78 (265)
T ss_pred cEEEEEEEEEEECCEE----EeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEEhhhCCHHH
Confidence 3799999999998766 9999999999999999999999999999999999999 9999999998653
Q ss_pred -CCeEEEEecCCCCCCcccCCcccChHHHHHhc-CC---CCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhh
Q 021362 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GA---PWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 149 -~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~-~~---~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~ 221 (313)
...++|++|++..++ .+++.+|+.+..... +. ......+++.++++.++. ..++++.+|||||+||++||+
T Consensus 79 ~~~~i~~v~q~~~~~~--~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lar 156 (265)
T PRK10253 79 VARRIGLLAQNATTPG--DITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAM 156 (265)
T ss_pred HhhheEEeeccCcCCC--CCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHH
Confidence 235899999965443 379999987642111 10 111223466788888774 346778899999999999999
Q ss_pred hhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
|++.++++|++|+|+..||. .+++.|.++.+ ..|++|||++++.. |++ |++++.|++.++..
T Consensus 157 al~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 157 VLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 99999999999999999999 45666666543 24799999998876 554 89999999888754
No 154
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-35 Score=268.29 Aligned_cols=202 Identities=16% Similarity=0.164 Sum_probs=161.6
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
++|+++|+++.|++.. ..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 6 ~~l~i~~l~~~~~~~~--~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~ 80 (269)
T PRK13648 6 SIIVFKNVSFQYQSDA--SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK---VKSGEIFYNNQAITDDNFEK 80 (269)
T ss_pred ceEEEEEEEEEcCCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHHH
Confidence 4799999999997521 128999999999999999999999999999999999999 99999999997632
Q ss_pred --CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhcc
Q 021362 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 150 --~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~ 225 (313)
+.++|++|++..++. ..++.+|+.+.....+.......+++.++++.++. ..+.++.+||+||+||++||+|++.
T Consensus 81 ~~~~i~~v~q~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 159 (269)
T PRK13648 81 LRKHIGIVFQNPDNQFV-GSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLAL 159 (269)
T ss_pred HHhheeEEEeChHHhcc-cccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 358999999642222 36888998776544433322334566788888874 3456777999999999999999999
Q ss_pred CceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 226 ~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
++++|++|+|+..||. .+++.|+++.+ ..|++|||++++.. |++ |++++.|+++++..
T Consensus 160 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 160 NPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999 55566666543 24699999999876 554 89999999888754
No 155
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-34 Score=262.00 Aligned_cols=202 Identities=11% Similarity=0.111 Sum_probs=157.6
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcc--cCCCCceeecCCCCC----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVKP---- 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~--~~p~~G~i~~~g~~~---- 148 (313)
|.+|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++. ..|++|+|.++|.+.
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14240 1 MGKISVKDLDLFYGDFQ----ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD 76 (250)
T ss_pred CCeEEEEEEEEEECCce----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 34699999999998765 99999999999999999999999999999999998750 001699999998653
Q ss_pred ------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC-CccHHHHHHHHHHhhc------CCCccCCCCCCcCCC
Q 021362 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~LSgG~kq 215 (313)
...++|++|++.. +. +|+.+|+.+.....+... ....+++.++++.++. ..+.++.+|||||+|
T Consensus 77 ~~~~~~~~~i~~~~q~~~~-~~--~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 153 (250)
T PRK14240 77 IDVNQLRKRVGMVFQQPNP-FP--MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQ 153 (250)
T ss_pred cchHHHhccEEEEecCCcc-Cc--ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHH
Confidence 2358999998643 32 699999988654443221 1234456677777653 235667799999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
|++||++++.++++|++|+|+..||. .+++.|+++.. ..+++|||++.+.. |++ |++++.|.++++.
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 154 RLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999 45555555532 24799999998876 554 8999999887764
Q ss_pred H
Q 021362 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 234 ~ 234 (250)
T PRK14240 234 T 234 (250)
T ss_pred h
Confidence 3
No 156
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=261.99 Aligned_cols=201 Identities=10% Similarity=0.084 Sum_probs=158.0
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcc--cCCCCceeecCCCCC------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVKP------ 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~--~~p~~G~i~~~g~~~------ 148 (313)
.|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++. ..|++|+|.++|.+.
T Consensus 4 ~l~~~nl~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 4 KVKLEQLNVHFGKNH----AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred EEEEEEEEEEeCCee----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 689999999998665 99999999999999999999999999999999999840 002689999999653
Q ss_pred ----CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCC-CCccHHHHHHHHHHhhcC------CCccCCCCCCcCCCcc
Q 021362 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPV 217 (313)
Q Consensus 149 ----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~------~~~~~~~LSgG~kqRv 217 (313)
.+.++|++|+...+. .+|+.||+.+.....+.. .....+++.++++.++.. .+..+.+|||||+||+
T Consensus 80 ~~~~~~~i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl 157 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFP--AMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRL 157 (252)
T ss_pred hHHhhccEEEEecCCCCCC--cCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHH
Confidence 234899999965443 479999998765433322 122234567777777742 2456779999999999
Q ss_pred hhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 218 EDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 218 ~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+||++++.++++|++|+|+..||. .+.+.|+++.+ ..|++|||++++.. |++ |++++.|+++++..
T Consensus 158 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14256 158 CIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFT 236 (252)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999 44555555533 24799999999876 554 89999999888753
No 157
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=6.6e-35 Score=265.62 Aligned_cols=197 Identities=15% Similarity=0.110 Sum_probs=158.7
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC---CceeecCCCCCC---
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASSFDSQVKPP--- 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~---~G~i~~~g~~~~--- 149 (313)
++|+++||++.|++.. +|+++||++.+||+++|+||||||||||+++|+|+++ |+ +|+|.++|.+..
T Consensus 3 ~~l~~~nl~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~~~~G~i~~~g~~~~~~~ 75 (262)
T PRK09984 3 TIIRVEKLAKTFNQHQ----ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT---GDKSAGSHIELLGRTVQREG 75 (262)
T ss_pred cEEEEeeEEEEeCCeE----EEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCCceEEEECCEeccccc
Confidence 3799999999998766 9999999999999999999999999999999999998 76 499999996531
Q ss_pred ----------CeEEEEecCCCCCCcccCCcccChHHHHHhc--------CCCCCccHHHHHHHHHHhhcC--CCccCCCC
Q 021362 150 ----------DVATVLPMDGFHLYLSQLDAMEDPKEAHARR--------GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSF 209 (313)
Q Consensus 150 ----------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~--------~~~~~~~~~~~~~~l~~l~~~--~~~~~~~L 209 (313)
..++|++|++..++ .+|+.+|+.+..... +........++.++++.++.. .++.+.+|
T Consensus 76 ~~~~~~~~~~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 153 (262)
T PRK09984 76 RLARDIRKSRANTGYIFQQFNLVN--RLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTL 153 (262)
T ss_pred ccchhHHHHHhheEEEcccccccc--CCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCcccc
Confidence 24899999965433 489999997653210 111122345678888888743 46677799
Q ss_pred CCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccc
Q 021362 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHIS 274 (313)
Q Consensus 210 SgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~ 274 (313)
|+||+||++||++++.++++|++|+|+..||. .+++.|+++.+ ..|++|||++++.. |++ |+++.
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~ 233 (262)
T PRK09984 154 SGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFY 233 (262)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999 55666666643 24799999998776 554 88989
Q ss_pred cCCchHH
Q 021362 275 TGKPPDV 281 (313)
Q Consensus 275 ~G~~~ev 281 (313)
.|+++++
T Consensus 234 ~g~~~~~ 240 (262)
T PRK09984 234 DGSSQQF 240 (262)
T ss_pred eCCHHHh
Confidence 9988775
No 158
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-35 Score=270.26 Aligned_cols=203 Identities=12% Similarity=0.051 Sum_probs=158.9
Q ss_pred EEEEccceEEcccccc-ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~-~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
.|+++|+++.|++... ...+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 82 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII---SETGQTIVGDYAIPANLKKI 82 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEcccccccc
Confidence 5999999999975320 1238999999999999999999999999999999999999 9999999998542
Q ss_pred ------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---CCCccCCCCCCcCCCcchh
Q 021362 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 149 ------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~LSgG~kqRv~i 219 (313)
.+.++|++|++..... ..|+.||+.+.....+.......+++.++++.++. ..++++.+|||||+||++|
T Consensus 83 ~~~~~~~~~i~~v~q~~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~l 161 (289)
T PRK13645 83 KEVKRLRKEIGLVFQFPEYQLF-QETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVAL 161 (289)
T ss_pred ccHHHHhccEEEEEeCcchhhh-hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHH
Confidence 2358999999632221 25999999876543332222223456677887775 2356777999999999999
Q ss_pred hhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 220 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 220 a~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
|+|++.++++|++|+|+..||. .+++.|+++.+ ..|++|||++++.. |++ |++++.|+++++..
T Consensus 162 aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (289)
T PRK13645 162 AGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFS 240 (289)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999 45555565542 24799999998876 554 89998998887643
No 159
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=8.3e-35 Score=265.94 Aligned_cols=205 Identities=18% Similarity=0.116 Sum_probs=160.9
Q ss_pred ccEEEEccceEEcccc-----ccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-
Q 021362 75 IPVVEARCMDEVYDAL-----AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP- 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~-----~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~- 148 (313)
|++|+++||++.|++. .....+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~sG~i~~~g~~~~ 77 (268)
T PRK10419 1 MTLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES---PSQGNVSWRGEPLA 77 (268)
T ss_pred CceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecc
Confidence 5689999999999730 001239999999999999999999999999999999999999 9999999999753
Q ss_pred ----------CCeEEEEecCCCCCCcccCCcccChHHHHHhc-CCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCC
Q 021362 149 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVG 214 (313)
Q Consensus 149 ----------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~k 214 (313)
.+.++|++|++...+.+..++.+|+.+..... +........++.++++.++.. .+..+.+||+||+
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~ 157 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQL 157 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHH
Confidence 23599999996322223478999887654321 222222344678888888753 3567779999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCch
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ 279 (313)
||++||++++.++++|++|+|+..||. .+.+.|+++.+ ..|++|||++++.. |++ |++++.|++.
T Consensus 158 qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~ 237 (268)
T PRK10419 158 QRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVG 237 (268)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChh
Confidence 999999999999999999999999999 35566666543 24799999999875 554 8999999888
Q ss_pred HHH
Q 021362 280 DVA 282 (313)
Q Consensus 280 ev~ 282 (313)
++.
T Consensus 238 ~~~ 240 (268)
T PRK10419 238 DKL 240 (268)
T ss_pred hcc
Confidence 764
No 160
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-35 Score=268.40 Aligned_cols=201 Identities=15% Similarity=0.136 Sum_probs=160.9
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
+|+++|+++.|++.. ...+|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~~ 79 (277)
T PRK13642 4 ILEVENLVFKYEKES-DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE---EFEGKVKIDGELLTAENVWNL 79 (277)
T ss_pred eEEEEEEEEEcCCCC-cCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECCEECCcCCHHHH
Confidence 799999999997421 2238999999999999999999999999999999999999 9999999999653
Q ss_pred CCeEEEEecCCC-CCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhcc
Q 021362 149 PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 ~~~i~~v~qd~~-~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~ 225 (313)
...++|++|++. .++ ..|+.+|+.+.....+.......+++.++++.++. ..+.++.+|||||+||++||++++.
T Consensus 80 ~~~i~~v~q~~~~~~~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~ 157 (277)
T PRK13642 80 RRKIGMVFQNPDNQFV--GATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIAL 157 (277)
T ss_pred hcceEEEEECHHHhhc--cCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 235899999963 233 37999999876543333322223456778887773 3456677999999999999999999
Q ss_pred CceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 226 ~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
++++|++|+|+..||. .+++.|.++.+ ..+++|||++++.. |++ |++++.|+++++..
T Consensus 158 ~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (277)
T PRK13642 158 RPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229 (277)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999 45555555543 24799999999865 554 99999999888764
No 161
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-34 Score=264.47 Aligned_cols=201 Identities=13% Similarity=0.093 Sum_probs=158.7
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc--CCCCceeecCCCCC-----
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~--~p~~G~i~~~g~~~----- 148 (313)
++|+++|+++.|+++. +|+|+||++.+||+++|+||||||||||+++|+|+++.. .|++|+|.++|.+.
T Consensus 19 ~~l~~~nl~~~~~~~~----il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 19 IALSTKDLHVYYGKKE----AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred eEEEEeeEEEEECCee----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 3799999999998766 999999999999999999999999999999999998500 04799999998653
Q ss_pred -----CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC-CccHHHHHHHHHHhhc------CCCccCCCCCCcCCCc
Q 021362 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDP 216 (313)
Q Consensus 149 -----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~LSgG~kqR 216 (313)
...++|++|++..+ . .|+.+|+.+.....+... ....+++.++++.++. ..+.++.+||+||+||
T Consensus 95 ~~~~~~~~i~~v~q~~~~~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qr 171 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPF-A--KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQR 171 (267)
T ss_pred ChHHHhcceEEEecCCccc-c--ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHH
Confidence 23589999996543 2 599999988654333221 1223456677777764 2356677999999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++||++++.++++|++|+|+..||. .+.+.|.++.. ..|++|||++++.. |++ |++++.|++.++..
T Consensus 172 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 251 (267)
T PRK14237 172 LCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFT 251 (267)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999 45555555532 24799999999866 554 99999999888743
No 162
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=9.1e-35 Score=263.29 Aligned_cols=201 Identities=15% Similarity=0.155 Sum_probs=158.2
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC-----C--
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----P-- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~-----~-- 148 (313)
++|+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+ .
T Consensus 2 ~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 74 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGK----GCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA---PDHGTATYIMRSGAELELYQ 74 (253)
T ss_pred ceEEEeeeEEEeCCce----EeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEEeccccccccccc
Confidence 3699999999998765 8999999999999999999999999999999999999 999999999865 2
Q ss_pred ----------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCC-CCCccHHHHHHHHHHhhcC---CCccCCCCCCcCC
Q 021362 149 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVG 214 (313)
Q Consensus 149 ----------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~k 214 (313)
.+.++|++|++.......+++.+|+.+....... ......+.+.++++.++.. .+..+.+|||||+
T Consensus 75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~ 154 (253)
T TIGR02323 75 LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQ 154 (253)
T ss_pred CCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHH
Confidence 1248999999643233346778888654322211 1112345677888888753 3557779999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCch
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ 279 (313)
||++||++++.++++|++|+|+..||. .+++.|.++.+ ..|++|||++++.. |++ |++++.|+++
T Consensus 155 qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~ 234 (253)
T TIGR02323 155 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTD 234 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999 44555555533 24799999999876 554 8999889887
Q ss_pred HHHH
Q 021362 280 DVAK 283 (313)
Q Consensus 280 ev~~ 283 (313)
++..
T Consensus 235 ~~~~ 238 (253)
T TIGR02323 235 QVLD 238 (253)
T ss_pred HHhc
Confidence 7753
No 163
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=6.7e-35 Score=264.71 Aligned_cols=197 Identities=15% Similarity=0.126 Sum_probs=158.5
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------C
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------P 149 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--------~ 149 (313)
|+++|+++.|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 2 l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 74 (256)
T TIGR03873 2 LRLSRVSWSAGGRL----IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR---PDAGTVDLAGVDLHGLSRRARA 74 (256)
T ss_pred ceEEeEEEEECCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEEcccCCHHHHh
Confidence 67899999998766 9999999999999999999999999999999999999 9999999999653 2
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHH-h---cCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhh
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHA-R---RGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~-~---~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al 223 (313)
+.++|++|++..++ .+|+.+|+.+... . .+.+.....+++.++++.++. ..+.++.+||+||+||++||+++
T Consensus 75 ~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 152 (256)
T TIGR03873 75 RRVALVEQDSDTAV--PLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARAL 152 (256)
T ss_pred hheEEecccCccCC--CCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 35899999964333 4799999987521 1 111222234467788888874 34667789999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+.+++++++|+|+..||. .+.+.|+++.+ ..+++|||++++.. |++ |++++.|+++++..
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 153 AQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999999999999999999 44555555533 24799999999976 555 89999998887743
No 164
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=261.63 Aligned_cols=198 Identities=14% Similarity=0.083 Sum_probs=158.1
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHH---hcccCC--CCceeecCCCCCC-
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR---INKIWP--QKASSFDSQVKPP- 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl---~~~~~p--~~G~i~~~g~~~~- 149 (313)
++|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+ ++ | ++|+|.++|.+..
T Consensus 2 ~~l~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~---~~~~~G~i~~~g~~~~~ 74 (250)
T PRK14245 2 VKIDARDVNFWYGDFH----ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIP---ATRLEGEIRIDGRNIYD 74 (250)
T ss_pred cEEEEEEEEEEECCEe----EEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccC---CCCCceEEEECCEeccc
Confidence 4799999999998765 99999999999999999999999999999999997 33 4 5899999996532
Q ss_pred ---------CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC-CccHHHHHHHHHHhhcC------CCccCCCCCCcC
Q 021362 150 ---------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 213 (313)
Q Consensus 150 ---------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~LSgG~ 213 (313)
+.++|++|++..+ . .|+.+|+.+.....+... ....+++.++++.++.. .+..+.+|||||
T Consensus 75 ~~~~~~~~~~~i~~v~q~~~~~-~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 151 (250)
T PRK14245 75 KGVQVDELRKNVGMVFQRPNPF-P--KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQ 151 (250)
T ss_pred ccccHHHHhhheEEEecCCccC-c--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHH
Confidence 2489999996543 2 599999987654433221 12334567788877642 345667999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchH
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~e 280 (313)
+||++||++++.++++|++|+|+..||. .+++.|+++.+ ..|++|||++++.. |++ |++++.|++++
T Consensus 152 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~ 231 (250)
T PRK14245 152 QQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKK 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999 45555555532 24799999999866 655 89999999988
Q ss_pred HHH
Q 021362 281 VAK 283 (313)
Q Consensus 281 v~~ 283 (313)
+..
T Consensus 232 ~~~ 234 (250)
T PRK14245 232 IFT 234 (250)
T ss_pred Hhc
Confidence 854
No 165
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=261.50 Aligned_cols=198 Identities=12% Similarity=0.075 Sum_probs=156.7
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCceeecCCCCC-
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-----~~G~i~~~g~~~- 148 (313)
|++|+++|+++.|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~~ 73 (249)
T PRK14253 1 MNKFNIENLDLFYGENQ----ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMND---LIEGVKITGKLTMDGEDIY 73 (249)
T ss_pred CCeEEEeccEEEECCee----eeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcc---cccCCCCceEEEECCEEcc
Confidence 56799999999998766 9999999999999999999999999999999999987 6 499999998643
Q ss_pred --------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC-CccHHHHHHHHHHhhc------CCCccCCCCCCcC
Q 021362 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGV 213 (313)
Q Consensus 149 --------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~LSgG~ 213 (313)
...++|++|++..+ . .|+.+|+.+.....+... ....+++.++++.++. ..+..+.+|||||
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~-~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~ 150 (249)
T PRK14253 74 GNIDVADLRIKVGMVFQKPNPF-P--MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQ 150 (249)
T ss_pred cccchHHHHhheeEEecCCCcC-c--ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHH
Confidence 23589999996533 3 699999987644333221 1223445666666653 2345667999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HHh----hcccccCCchH
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv~----griv~~G~~~e 280 (313)
+||++||++++.++++|++|+|+..||. .+++.|+++.+. .|++||+++++.. |++ |++++.|++++
T Consensus 151 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 230 (249)
T PRK14253 151 QQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQV 230 (249)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999 445555555432 4799999999876 554 89999998877
Q ss_pred HH
Q 021362 281 VA 282 (313)
Q Consensus 281 v~ 282 (313)
+.
T Consensus 231 ~~ 232 (249)
T PRK14253 231 IF 232 (249)
T ss_pred HH
Confidence 64
No 166
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=7.8e-35 Score=288.50 Aligned_cols=196 Identities=17% Similarity=0.152 Sum_probs=161.7
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
++|+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 10 ~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 82 (510)
T PRK15439 10 PLLCARSISKQYSGVE----VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP---PDSGTLEIGGNPCARLTPAK 82 (510)
T ss_pred ceEEEEeEEEEeCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCHHH
Confidence 4799999999998766 9999999999999999999999999999999999999 99999999986532
Q ss_pred ---CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhc
Q 021362 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 150 ---~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
..++|++|++..+. .+|+.||+.+.... .....+++.++++.++. ..++++.+|||||||||+||++++
T Consensus 83 ~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 83 AHQLGIYLVPQEPLLFP--NLSVKENILFGLPK----RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred HHhCCEEEEeccCccCC--CCcHHHHhhccccc----chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHH
Confidence 34899999965443 48999998775321 12234567888888884 346677899999999999999999
Q ss_pred cCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
.++++|++|+|+..||. .+++.|+++.++ .|++|||++++.. |++ |+++..|+++++...
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTD 230 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHH
Confidence 99999999999999999 455555555433 4699999999876 554 899989988877543
No 167
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.9e-35 Score=257.09 Aligned_cols=178 Identities=14% Similarity=0.104 Sum_probs=142.5
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------Ce
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------DV 151 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------~~ 151 (313)
|+++|+++.|++.. .|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.. +.
T Consensus 1 i~~~~l~~~~~~~~------~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~---~~~G~i~~~g~~~~~~~~~~~~ 71 (211)
T cd03298 1 VRLDKIRFSYGEQP------MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET---PQSGRVLINGVDVTAAPPADRP 71 (211)
T ss_pred CEEEeEEEEeCCEe------cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCcCCHhHcc
Confidence 46899999997532 29999999999999999999999999999999999 99999999996532 35
Q ss_pred EEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCceE
Q 021362 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar~ 229 (313)
++|++|++..++ .+|+.||+.+.............+++.++++.++.. .+.++.+||+|||||++||++++.++++
T Consensus 72 i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~l 149 (211)
T cd03298 72 VSMLFQENNLFA--HLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPV 149 (211)
T ss_pred EEEEecccccCC--CCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 899999975443 479999998754321111122345677888888743 4567779999999999999999999999
Q ss_pred EEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH
Q 021362 230 VIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 230 Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
+++|+|+..||. .+++.|+++.+ ..+++|||++++..
T Consensus 150 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~ 194 (211)
T cd03298 150 LLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKR 194 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh
Confidence 999999999999 45566665542 24699999999865
No 168
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=8.1e-35 Score=275.89 Aligned_cols=189 Identities=12% Similarity=0.100 Sum_probs=154.8
Q ss_pred cceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------------C
Q 021362 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------------P 149 (313)
Q Consensus 82 ~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------------~ 149 (313)
||+|.|++.. + ++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 4 ~l~~~~~~~~-----~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~i~~~~~~~~~~~~~ 74 (354)
T TIGR02142 4 RFSKRLGDFS-----L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR---PDEGEIVLNGRTLFDSRKGIFLPPEK 74 (354)
T ss_pred EEEEEECCEE-----E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECccCccccccchhh
Confidence 7899998643 4 8999999999999999999999999999999999 9999999998542 2
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCc
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~a 227 (313)
+.++|++|++..++ .+|+.||+.+..... ......+++.++++.++. ..++++.+||||||||++||+|++.++
T Consensus 75 ~~i~~v~q~~~l~~--~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p 150 (354)
T TIGR02142 75 RRIGYVFQEARLFP--HLSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSP 150 (354)
T ss_pred CCeEEEecCCccCC--CCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 35899999965443 489999998865422 222234567888988884 346677899999999999999999999
Q ss_pred eEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 228 KVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 228 r~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++|++|+|+..||. .+++.|+++.++ .+++|||++++.. |++ |+++..|+++++..
T Consensus 151 ~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 151 RLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 99999999999999 456666666432 4799999999876 554 89999999888754
No 169
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.6e-34 Score=266.08 Aligned_cols=206 Identities=17% Similarity=0.181 Sum_probs=172.2
Q ss_pred ccEEEEccceEEcccc-------ccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC
Q 021362 75 IPVVEARCMDEVYDAL-------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~-------~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~ 147 (313)
-++++++++...|.-+ ...+.+++++||++.+|+.+||+|.||||||||-.+|.+++ +.+|+|.|+|++
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~----~s~G~I~F~G~~ 349 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI----PSQGEIRFDGQD 349 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc----CcCceEEECCcc
Confidence 3589999999999532 23466999999999999999999999999999999999999 556999999976
Q ss_pred C-----------CCeEEEEecCCCCCCcccCCcccChHHHHHhcC--CCCCccHHHHHHHHHHhhc---CCCccCCCCCC
Q 021362 148 P-----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG--APWTFNPLLLLNCLKNLRN---QGSVYAPSFDH 211 (313)
Q Consensus 148 ~-----------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~--~~~~~~~~~~~~~l~~l~~---~~~~~~~~LSg 211 (313)
. ++.+.+||||+|-..++.|||.+.+..++..++ ....+..+++.++|+.+|. ..++|+.++||
T Consensus 350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSG 429 (534)
T COG4172 350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSG 429 (534)
T ss_pred ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCc
Confidence 3 345899999999888889999999999987764 3345556778889999984 35678889999
Q ss_pred cCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccC
Q 021362 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTG 276 (313)
Q Consensus 212 G~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G 276 (313)
|||||++||+|++.+++.+++|+|+.-||- .+.+.++++.++ -+|||||+..+.. +++ |++|++|
T Consensus 430 GQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G 509 (534)
T COG4172 430 GQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQG 509 (534)
T ss_pred chhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeC
Confidence 999999998888888888888888888888 455556665443 3699999999988 666 9999999
Q ss_pred CchHHHHH
Q 021362 277 KPPDVAKW 284 (313)
Q Consensus 277 ~~~ev~~~ 284 (313)
+.+++...
T Consensus 510 ~~~~if~~ 517 (534)
T COG4172 510 PTEAVFAN 517 (534)
T ss_pred CHHHHhcC
Confidence 99999654
No 170
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1.1e-34 Score=257.92 Aligned_cols=190 Identities=19% Similarity=0.134 Sum_probs=156.0
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC----CeEE
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----DVAT 153 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~----~~i~ 153 (313)
|+++|+++.|++.. +|+++||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.. +.++
T Consensus 1 l~l~~v~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~~~~~~~~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGKQT----AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR---PTSGEIIFDGHPWTRKDLHKIG 73 (223)
T ss_pred CEEEeEEEEECCEE----EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEeccccccccEE
Confidence 46899999998765 9999999999999999999999999999999999999 99999999986532 3689
Q ss_pred EEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCceEEE
Q 021362 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 154 ~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar~Li 231 (313)
|++|++..++ .+|+++|+.+.....+. ...++.++++.++.. .+..+.+||+||+||+++|++++.++++|+
T Consensus 74 ~~~q~~~~~~--~~t~~~~~~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~lll 147 (223)
T TIGR03740 74 SLIESPPLYE--NLTARENLKVHTTLLGL----PDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLI 147 (223)
T ss_pred EEcCCCCccc--cCCHHHHHHHHHHHcCC----CHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999865443 47999999876543332 245677888888743 456677999999999999999999999999
Q ss_pred EcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchH
Q 021362 232 VDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 232 ~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~e 280 (313)
+|+|+..||. .+++.|.++.+. .+++|||++++.. |++ |+++..|++.+
T Consensus 148 lDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 148 LDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred ECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999 455555555432 4799999999876 554 88888887654
No 171
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-35 Score=288.82 Aligned_cols=199 Identities=17% Similarity=0.141 Sum_probs=161.1
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
++|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 4 ~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~ 76 (510)
T PRK09700 4 PYISMAGIGKSFGPVH----ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE---PTKGTITINNINYNKLDHKL 76 (510)
T ss_pred ceEEEeeeEEEcCCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC---CCccEEEECCEECCCCCHHH
Confidence 4799999999998766 9999999999999999999999999999999999999 99999999986531
Q ss_pred ---CeEEEEecCCCCCCcccCCcccChHHHHHh----cCCC---CCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcc
Q 021362 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAP---WTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPV 217 (313)
Q Consensus 150 ---~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~----~~~~---~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv 217 (313)
..++|++|++..+. .+|+.||+.+.... ++.. .....+++.++++.++. ..++++.+|||||||||
T Consensus 77 ~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 77 AAQLGIGIIYQELSVID--ELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQML 154 (510)
T ss_pred HHHCCeEEEeecccccC--CCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHH
Confidence 35899999965433 48999999764321 1211 11234567788888884 34667789999999999
Q ss_pred hhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 218 EDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 218 ~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+||++++.++++|++|+|+..||. .+++.|+++.++ .|++|||++++.. |++ |+++..|.++++..
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence 999999999999999999999999 455555555433 4799999999986 555 89988898877643
No 172
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.1e-34 Score=254.77 Aligned_cols=176 Identities=12% Similarity=0.015 Sum_probs=144.4
Q ss_pred EccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-----------
Q 021362 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----------- 148 (313)
Q Consensus 80 ~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~----------- 148 (313)
++|+++.|++.. +|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 i~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~ 73 (206)
T TIGR03608 1 LKNISKKFGDKI----ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK---FDSGQVYLNGKETPPLNSKKASKF 73 (206)
T ss_pred CcceEEEECCEE----EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccchhhHHHH
Confidence 478999998766 9999999999999999999999999999999999999 9999999999762
Q ss_pred -CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhcc
Q 021362 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 -~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~ 225 (313)
.+.++|++|++..++ .+|+.||+.+.....+.......+++.++++.++. ..++.+.+||+||+||++||++++.
T Consensus 74 ~~~~i~~~~q~~~~~~--~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~ 151 (206)
T TIGR03608 74 RREKLGYLFQNFALIE--NETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILK 151 (206)
T ss_pred HHhCeeEEecchhhcc--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 235899999965433 48999999886544333333345567888888874 3466778999999999999999999
Q ss_pred CceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHH
Q 021362 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTA 264 (313)
Q Consensus 226 ~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~ 264 (313)
++++|++|+|+..||. .+++.|+++.+. .+++||+++..
T Consensus 152 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 197 (206)
T TIGR03608 152 DPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA 197 (206)
T ss_pred CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 9999999999999999 555555555432 46999999864
No 173
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-34 Score=260.18 Aligned_cols=198 Identities=10% Similarity=0.084 Sum_probs=155.8
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC-----CceeecCCCCC---
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSFDSQVKP--- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~-----~G~i~~~g~~~--- 148 (313)
+|+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |+ +|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~~~~~ 76 (252)
T PRK14272 4 LLSAQDVNIYYGDKQ----AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHD---LTPGARVTGRILLDGQDIYGP 76 (252)
T ss_pred EEEEeeeEEEECCEE----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceeEEECCEEcccC
Confidence 699999999998765 9999999999999999999999999999999999987 64 89999998653
Q ss_pred -------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC-CccHHHHHHHHHHhhc------CCCccCCCCCCcCC
Q 021362 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGVG 214 (313)
Q Consensus 149 -------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~LSgG~k 214 (313)
...++|++|++..+. .+|+.||+.+.....+... ....+.+.++++.++. ..+.++.+|||||+
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~--~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 154 (252)
T PRK14272 77 RVDPVAMRRRVGMVFQKPNPFP--TMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQ 154 (252)
T ss_pred ccCHHHhhceeEEEeccCccCc--CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHH
Confidence 235899999965443 4799999987654332211 1122344455555532 23566779999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchHH
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~ev 281 (313)
||++||++++.++++|++|+|+..||. .+.+.|+++.+ ..+++|||++++.. |++ |++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999 44555555542 24799999999886 554 899999998887
Q ss_pred HH
Q 021362 282 AK 283 (313)
Q Consensus 282 ~~ 283 (313)
..
T Consensus 235 ~~ 236 (252)
T PRK14272 235 FT 236 (252)
T ss_pred Hh
Confidence 54
No 174
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.6e-34 Score=259.79 Aligned_cols=195 Identities=16% Similarity=0.027 Sum_probs=153.1
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh--cccCCCCceeecCCCCCC------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~--~~~~p~~G~i~~~g~~~~------ 149 (313)
|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|++ + |++|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~g~~~~~~~~~~ 73 (243)
T TIGR01978 1 LKIKDLHVSVEDKE----ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYE---VTSGTILFKGQDLLELEPDE 73 (243)
T ss_pred CeEeeEEEEECCEE----EEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCcceEEECCEecCCCCHHH
Confidence 47899999998765 999999999999999999999999999999999994 6 99999999996531
Q ss_pred ---CeEEEEecCCCCCCcccCCcccChHHHHHhcC-C------CCCccHHHHHHHHHHhhcC---CCccCC-CCCCcCCC
Q 021362 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-A------PWTFNPLLLLNCLKNLRNQ---GSVYAP-SFDHGVGD 215 (313)
Q Consensus 150 ---~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~-~------~~~~~~~~~~~~l~~l~~~---~~~~~~-~LSgG~kq 215 (313)
..++|++|++..+. .+|+.+|+.+...... . ......+++.++++.++.. .++.+. +|||||||
T Consensus 74 ~~~~~i~~v~q~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~q 151 (243)
T TIGR01978 74 RARAGLFLAFQYPEEIP--GVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKK 151 (243)
T ss_pred hhccceEeeeccccccC--CcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHH
Confidence 23789999965443 4899999987643221 1 1111234567788888753 345555 59999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH----HHh----hcccccCCchH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ----RVL----KRHISTGKPPD 280 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~----rv~----griv~~G~~~e 280 (313)
|++||++++.++++|++|+|+..||. .+++.|+++.++ .+++|||++++.. |++ |++++.|++++
T Consensus 152 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (243)
T TIGR01978 152 RNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVEL 231 (243)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHH
Confidence 99999999999999999999999999 555666665432 4799999999864 443 88888887765
Q ss_pred H
Q 021362 281 V 281 (313)
Q Consensus 281 v 281 (313)
+
T Consensus 232 ~ 232 (243)
T TIGR01978 232 A 232 (243)
T ss_pred h
Confidence 4
No 175
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-34 Score=261.31 Aligned_cols=201 Identities=12% Similarity=0.122 Sum_probs=156.6
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc--CCCCceeecCCCCC-----
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~--~p~~G~i~~~g~~~----- 148 (313)
++|+++|+++.|++.. +|+++||+|++||+++|+||||||||||+++|+|+++.. .|++|+|.++|.+.
T Consensus 20 ~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 95 (268)
T PRK14248 20 HILEVKDLSIYYGEKR----AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI 95 (268)
T ss_pred ceEEEEEEEEEeCCce----eeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc
Confidence 4799999999998766 999999999999999999999999999999999986200 15899999998653
Q ss_pred -----CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC-CccHHHHHHHHHHhhcC------CCccCCCCCCcCCCc
Q 021362 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP 216 (313)
Q Consensus 149 -----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~LSgG~kqR 216 (313)
.+.++|++|++..+ . .|+.+|+.+.....+... ....+.+.+.++.++.. .+.++.+|||||+||
T Consensus 96 ~~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 172 (268)
T PRK14248 96 NVVNLRREIGMVFQKPNPF-P--KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQR 172 (268)
T ss_pred cHHHHhccEEEEecCCccC-c--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHH
Confidence 23589999996543 3 499999987643332211 11234456667766532 345677999999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++||++++.++++|++|+|+..||. .+++.|+++.. ..|++|||++++.. |++ |++++.|+++++..
T Consensus 173 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 252 (268)
T PRK14248 173 LCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFT 252 (268)
T ss_pred HHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999 45555555543 24799999998876 655 89999998877743
No 176
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.6e-34 Score=252.38 Aligned_cols=178 Identities=17% Similarity=0.085 Sum_probs=147.2
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------C
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------P 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------~ 149 (313)
||+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~v~~~g~~~~~~~~~~~ 73 (204)
T PRK13538 1 MLEARNLACERDERI----LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR---PDAGEVLWQGEPIRRQRDEYH 73 (204)
T ss_pred CeEEEEEEEEECCEE----EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccchHHhh
Confidence 489999999998766 9999999999999999999999999999999999999 9999999998653 2
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCc
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~a 227 (313)
+.++|++|++..++ .+|+.||+.+....++. ...+++.++++.++. ..+.++.+|||||+||++||++++.++
T Consensus 74 ~~~~~~~~~~~~~~--~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p 148 (204)
T PRK13538 74 QDLLYLGHQPGIKT--ELTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRA 148 (204)
T ss_pred hheEEeCCccccCc--CCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCC
Confidence 35889998854333 47999999887544321 344667888888884 346677799999999999999999999
Q ss_pred eEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH
Q 021362 228 KVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 228 r~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
+++++|+|+..||. .+++.|+++.+ ..+++|||++++..
T Consensus 149 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 149 PLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVAS 194 (204)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhcc
Confidence 99999999999999 45555555532 24799999998865
No 177
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-34 Score=258.68 Aligned_cols=199 Identities=14% Similarity=0.108 Sum_probs=156.6
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcc--cCCCCceeecCCCCC------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVKP------ 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~--~~p~~G~i~~~g~~~------ 148 (313)
+|+++|+++.|+... +|+++||+|++||+++|+|+||||||||+++|+|+++. ..|++|+|.++|++.
T Consensus 4 ~l~~~~l~~~~~~~~----~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~ 79 (251)
T PRK14251 4 IISAKDVHLSYGNYE----ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79 (251)
T ss_pred eEEEEeeEEEECCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccch
Confidence 799999999998765 99999999999999999999999999999999999850 012799999999653
Q ss_pred ----CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCC-ccHHHHHHHHHHhhcC------CCccCCCCCCcCCCcc
Q 021362 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPV 217 (313)
Q Consensus 149 ----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~------~~~~~~~LSgG~kqRv 217 (313)
...++|++|++..+ . .|+.||+.+.....+.... ....++.++++.++.. .+..+.+|||||+||+
T Consensus 80 ~~~~~~~i~~~~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~ 156 (251)
T PRK14251 80 LVELRKEVGMVFQQPTPF-P--FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRI 156 (251)
T ss_pred HHHhhccEEEEecCCccC-C--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHH
Confidence 23589999996533 3 6999999876544333211 1234566777777642 3556779999999999
Q ss_pred hhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 218 EDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 218 ~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
+||++++.++++|++|+|+..||. .+.+.|.++.. ..|++|||++++.. |++ |+++..|+++++.
T Consensus 157 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 157 CIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999 44455555432 24799999999876 554 8999999887764
No 178
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-34 Score=258.02 Aligned_cols=197 Identities=14% Similarity=0.156 Sum_probs=159.7
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------CCe
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDV 151 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------~~~ 151 (313)
|+++|+++.|++.. +++++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.
T Consensus 1 l~~~~l~~~~~~~~----il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (232)
T cd03300 1 IELENVSKFYGGFV----ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET---PTSGEILLDGKDITNLPPHKRP 73 (232)
T ss_pred CEEEeEEEEeCCee----eeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhcc
Confidence 46899999998766 9999999999999999999999999999999999999 9999999998653 246
Q ss_pred EEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCceE
Q 021362 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar~ 229 (313)
++|++|++..+. .+|+.+|+.+.....+........++.++++.++.. .+..+.+||+||+||++||++++.++++
T Consensus 74 i~~~~q~~~~~~--~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (232)
T cd03300 74 VNTVFQNYALFP--HLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKV 151 (232)
T ss_pred eEEEecccccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 899999965443 479999998765544322222345667788887743 4567779999999999999999999999
Q ss_pred EEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 230 VIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 230 Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+++|+|+..||. .+++.|.++.. ..+++||+++++.. |++ |++++.|+..++..
T Consensus 152 lllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~ 220 (232)
T cd03300 152 LLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220 (232)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHh
Confidence 999999999999 45555555543 24799999999866 554 89988888776654
No 179
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-34 Score=262.14 Aligned_cols=200 Identities=12% Similarity=0.102 Sum_probs=157.4
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc--CCCCceeecCCCCC-----
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~--~p~~G~i~~~g~~~----- 148 (313)
++|+++||++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++.. +|++|+|.++|.+.
T Consensus 12 ~~l~i~nl~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 12 IIISLQNVTISYGTFE----AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred ceEEEEeEEEEECCEE----EEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 3799999999998766 999999999999999999999999999999999998610 14899999998653
Q ss_pred -----CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc------CCCccCCCCCCcCCCcc
Q 021362 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDPV 217 (313)
Q Consensus 149 -----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~~~~LSgG~kqRv 217 (313)
.+.++|++|++.. +. .|+.||+.+.....+.. ....+++.++++.++. ..+.++.+||+|||||+
T Consensus 88 ~~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl 163 (269)
T PRK14259 88 DPVEVRRRIGMVFQQPNP-FP--KSIYENIAFGARINGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRL 163 (269)
T ss_pred CHHHHhhceEEEccCCcc-ch--hhHHHHHhhhhhhcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHH
Confidence 1358999999643 33 49999998765443322 1223455667777753 24567779999999999
Q ss_pred hhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh---------------hccc
Q 021362 218 EDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL---------------KRHI 273 (313)
Q Consensus 218 ~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~---------------griv 273 (313)
+||++++.++++|++|+|+..||. .+++.|.++.. ..|++|||++++.. |++ |+++
T Consensus 164 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~ 243 (269)
T PRK14259 164 CIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLV 243 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEE
Confidence 999999999999999999999999 45556655543 24799999999876 432 3578
Q ss_pred ccCCchHHHH
Q 021362 274 STGKPPDVAK 283 (313)
Q Consensus 274 ~~G~~~ev~~ 283 (313)
+.|++.++..
T Consensus 244 ~~~~~~~~~~ 253 (269)
T PRK14259 244 EFNETKKIFN 253 (269)
T ss_pred EeCCHHHHHh
Confidence 8899888865
No 180
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.2e-34 Score=286.53 Aligned_cols=204 Identities=15% Similarity=0.158 Sum_probs=161.1
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCceeecCCCCC--
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP-- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-----~~G~i~~~g~~~-- 148 (313)
+||+++|+++.|++......+|+++||+|++||+++|+||||||||||+|+|+|+++ | ++|+|.++|.+.
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~i~~ 80 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLP---SPPVVYPSGDIRFHGESLLH 80 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC---CCcCCccceEEEECCEeccc
Confidence 479999999999631111239999999999999999999999999999999999997 6 799999998652
Q ss_pred ----------CCeEEEEecCCCCCCcccCCcccChHHHHHh-cCCCCCccHHHHHHHHHHhhcC-----CCccCCCCCCc
Q 021362 149 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHG 212 (313)
Q Consensus 149 ----------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~LSgG 212 (313)
.+.++|++|++.....+.+++.+++.+.... .+.+.....+++.++++.++.. .++++.+||||
T Consensus 81 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgG 160 (529)
T PRK15134 81 ASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGG 160 (529)
T ss_pred CCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHH
Confidence 1358999999642222346888888765432 2333333456778899998853 25678899999
Q ss_pred CCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCC
Q 021362 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 213 ~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~ 277 (313)
|||||+||+|++.++++|++|+|+..||. .+++.|+++.++ .|+||||++.+.. |++ |++++.|.
T Consensus 161 e~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~ 240 (529)
T PRK15134 161 ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNR 240 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999 555666665432 4799999999876 665 89988888
Q ss_pred chHHH
Q 021362 278 PPDVA 282 (313)
Q Consensus 278 ~~ev~ 282 (313)
++++.
T Consensus 241 ~~~~~ 245 (529)
T PRK15134 241 AATLF 245 (529)
T ss_pred HHHHh
Confidence 87774
No 181
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-34 Score=264.24 Aligned_cols=203 Identities=10% Similarity=0.085 Sum_probs=159.0
Q ss_pred CccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc--ccCCCCceeecCCCCC---
Q 021362 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASSFDSQVKP--- 148 (313)
Q Consensus 74 ~m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~--~~~p~~G~i~~~g~~~--- 148 (313)
..++|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+.+ ..+|++|+|.++|.+.
T Consensus 36 ~~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~ 111 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEFE----AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGK 111 (286)
T ss_pred CceEEEEeeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhc
Confidence 345799999999998765 9999999999999999999999999999999999852 0013999999998542
Q ss_pred -------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC-CccHHHHHHHHHHhhc------CCCccCCCCCCcCC
Q 021362 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGVG 214 (313)
Q Consensus 149 -------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~LSgG~k 214 (313)
.+.++|++|++..+ . .|+.||+.+.....+... ....+++.++++.++. ..+.++.+|||||+
T Consensus 112 ~~~~~~~~~~i~~v~q~~~l~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~ 188 (286)
T PRK14275 112 FTDEVLLRKKIGMVFQKPNPF-P--KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQ 188 (286)
T ss_pred ccchHHhhhcEEEECCCCCCC-c--cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHH
Confidence 23589999996543 3 499999988654433321 1123456667777653 23556779999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchHH
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~ev 281 (313)
||++||++++.++++|++|+|+..||. .+++.|+++.. ..|++|||++++.. |++ |+++..|++.++
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999 45555555543 24799999999876 554 899999998887
Q ss_pred HH
Q 021362 282 AK 283 (313)
Q Consensus 282 ~~ 283 (313)
..
T Consensus 269 ~~ 270 (286)
T PRK14275 269 FT 270 (286)
T ss_pred Hh
Confidence 54
No 182
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-34 Score=263.73 Aligned_cols=199 Identities=12% Similarity=0.053 Sum_probs=154.9
Q ss_pred EEEEccceEEcc-ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-----CC
Q 021362 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PD 150 (313)
Q Consensus 77 ~l~~~~l~~~y~-~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-----~~ 150 (313)
+|+++|+++.|+ +.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. ..
T Consensus 6 ~l~~~~l~~~~~~~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (272)
T PRK15056 6 GIVVNDVTVTWRNGHT----ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR---LASGKISILGQPTRQALQKN 78 (272)
T ss_pred eEEEEeEEEEecCCcE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEhHHhhccc
Confidence 699999999996 444 9999999999999999999999999999999999999 9999999999653 23
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHh-cC---CCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhc
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHAR-RG---APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~-~~---~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
.++|++|++........++.+++.+.... .+ .+.....+++.++++.++. ..+.++.+|||||+||++||++++
T Consensus 79 ~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~ 158 (272)
T PRK15056 79 LVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIA 158 (272)
T ss_pred eEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 58999998643221124577776543210 11 1112234456778888874 346677899999999999999999
Q ss_pred cCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh---hcccccCCchHHH
Q 021362 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL---KRHISTGKPPDVA 282 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~---griv~~G~~~ev~ 282 (313)
.++++|++|+|+..||. .+.+.|.++.++ .|++|||++++.. |++ |+++..|+++++.
T Consensus 159 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~~G~i~~~g~~~~~~ 229 (272)
T PRK15056 159 QQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLASGPTETTF 229 (272)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEECCEEEeecCHHhcc
Confidence 99999999999999999 455555555432 4799999998876 544 8988889888764
No 183
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=2.6e-34 Score=253.94 Aligned_cols=189 Identities=14% Similarity=0.100 Sum_probs=149.5
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------CCe
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDV 151 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------~~~ 151 (313)
++++|+++.|+. .+.++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. ...
T Consensus 1 ~~~~~l~~~~~~------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 71 (213)
T TIGR01277 1 LALDKVRYEYEH------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE---PASGSIKVNDQSHTGLAPYQRP 71 (213)
T ss_pred CeEEeeeEEeCC------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEcccCChhccc
Confidence 468999999973 5679999999999999999999999999999999999 9999999999653 245
Q ss_pred EEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceE
Q 021362 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~ 229 (313)
++|++|++..+. .+|+.||+.+.............+++.++++.++. ..++.+.+||+||+||++||++++.++++
T Consensus 72 i~~v~q~~~~~~--~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 149 (213)
T TIGR01277 72 VSMLFQENNLFA--HLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPI 149 (213)
T ss_pred eEEEeccCccCC--CCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 899999975443 47999999875432111111234567778888874 34566779999999999999999999999
Q ss_pred EEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCC
Q 021362 230 VIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 230 Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~ 277 (313)
+++|+|+..||. .+++.|.++.+ ..+++|||++++.. +++ |++++.|.
T Consensus 150 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 150 LLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999 45556665543 24799999998765 544 77766653
No 184
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-34 Score=255.96 Aligned_cols=176 Identities=17% Similarity=0.207 Sum_probs=145.3
Q ss_pred ccEEEEccceEEcccccc-----ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC
Q 021362 75 IPVVEARCMDEVYDALAQ-----RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~-----~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~ 149 (313)
+++++++||+|.|..... .+.+++||||+|++||++||+|+||||||||.|+|.||++ |++|+|+++|++..
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~---pt~G~i~f~g~~i~ 78 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE---PTSGEILFEGKDIT 78 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC---CCCceEEEcCcchh
Confidence 458999999999964321 2469999999999999999999999999999999999999 99999999987622
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---CCCccCCCCCCcCCCcchhhhhhccC
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
. ++ .....+++.++|+.++. ...+++.+|||||+||++||+|++.+
T Consensus 79 ~----------------~~---------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~ 127 (268)
T COG4608 79 K----------------LS---------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALN 127 (268)
T ss_pred h----------------cc---------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhC
Confidence 1 11 22345678899999984 35678889999999999999999999
Q ss_pred ceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 227 HKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 227 ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
+.+++.|+++..||- .++..+.++.++ .+|||||+..+.. |++ |++++.|+.+++..+
T Consensus 128 P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~ 200 (268)
T COG4608 128 PKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSN 200 (268)
T ss_pred CcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhC
Confidence 999999999999998 344444444433 3699999999998 665 999999999998653
No 185
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-34 Score=278.88 Aligned_cols=194 Identities=15% Similarity=0.136 Sum_probs=164.6
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~----- 149 (313)
+++++++|++|+|++.. +|++|||++.+||+++|+|.||||||||+|+|+|.++ |++|+|.++|+...
T Consensus 6 ~~ll~~~~i~K~FggV~----AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~---p~~G~I~~~G~~~~~~sp~ 78 (500)
T COG1129 6 PPLLELRGISKSFGGVK----ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP---PDSGEILIDGKPVAFSSPR 78 (500)
T ss_pred cceeeeecceEEcCCce----eeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc---CCCceEEECCEEccCCCHH
Confidence 45899999999999988 9999999999999999999999999999999999999 99999999997632
Q ss_pred ----CeEEEEecCCCCCCcccCCcccChHHHHHhcC----CCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchh
Q 021362 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG----APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 150 ----~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~----~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~i 219 (313)
.-|.+|+|+....+ +|||.||+.++..... ..+.....++.++|+.++. ..+..+.+||.||||.|+|
T Consensus 79 ~A~~~GI~~V~QEl~L~p--~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeI 156 (500)
T COG1129 79 DALAAGIATVHQELSLVP--NLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEI 156 (500)
T ss_pred HHHhCCcEEEeechhccC--CccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHH
Confidence 23889999966554 5999999987654322 2233445567788888874 3666788999999999999
Q ss_pred hhhhccCceEEEEcCCccccCh----hhHHHHHhhccce---EEEEcChHHHHH---HHh----hcccccCC
Q 021362 220 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEK---WFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 220 a~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~~---i~vtHd~~~~~~---rv~----griv~~G~ 277 (313)
|+|+..++++||+|+|+.-|++ .+++.++++.+++ |||||.++++.+ |+. |+.+..++
T Consensus 157 ArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 157 ARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 9999999999999999999999 6788888887764 699999999998 554 88887665
No 186
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-34 Score=264.69 Aligned_cols=198 Identities=17% Similarity=0.130 Sum_probs=157.8
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC--------CceeecCCCCC
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--------KASSFDSQVKP 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~--------~G~i~~~g~~~ 148 (313)
||+++|+++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ |+ +|+|.++|.+.
T Consensus 1 ml~~~nl~~~~~~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~---p~~~~~~~~~~G~i~~~g~~~ 73 (272)
T PRK13547 1 MLTADHLHVARRHRA----ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT---GGGAPRGARVTGDVTLNGEPL 73 (272)
T ss_pred CeEEEEEEEEECCEe----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CcccccccCCceEEEECCEEc
Confidence 489999999998766 9999999999999999999999999999999999998 88 99999999653
Q ss_pred C--------CeEEEEecCCCCCCcccCCcccChHHHHHhc----CCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCC
Q 021362 149 P--------DVATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVG 214 (313)
Q Consensus 149 ~--------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~----~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~k 214 (313)
. +.++|++|++..++. +|+.||+.+..... +.......+.+.++++.++. ..++++.+|||||+
T Consensus 74 ~~~~~~~~~~~~~~v~q~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 151 (272)
T PRK13547 74 AAIDAPRLARLRAVLPQAAQPAFA--FSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGEL 151 (272)
T ss_pred ccCCHHHHHhhcEEecccCCCCCC--CcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHH
Confidence 2 247999999654343 79999997753211 11112234456778888874 34667789999999
Q ss_pred Ccchhhhhhc---------cCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----h
Q 021362 215 DPVEDDILVG---------LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----K 270 (313)
Q Consensus 215 qRv~ia~al~---------~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----g 270 (313)
||++||++++ .++++|++|+|+..||. .+++.|+++.++ .+++|||++++.. |++ |
T Consensus 152 qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G 231 (272)
T PRK13547 152 ARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADG 231 (272)
T ss_pred HHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999 59999999999999999 455555555432 4799999999875 554 8
Q ss_pred cccccCCchHHHH
Q 021362 271 RHISTGKPPDVAK 283 (313)
Q Consensus 271 riv~~G~~~ev~~ 283 (313)
++++.|+++++..
T Consensus 232 ~i~~~g~~~~~~~ 244 (272)
T PRK13547 232 AIVAHGAPADVLT 244 (272)
T ss_pred eEEEecCHHHHcC
Confidence 9999998887743
No 187
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-34 Score=262.51 Aligned_cols=198 Identities=14% Similarity=0.104 Sum_probs=156.8
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCceeecCCCCC--
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP-- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-----~~G~i~~~g~~~-- 148 (313)
++|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 20 ~~l~i~nl~~~~~~~~----il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---p~~~~~~~G~i~~~g~~i~~ 92 (276)
T PRK14271 20 PAMAAVNLTLGFAGKT----VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMND---KVSGYRYSGDVLLGGRSIFN 92 (276)
T ss_pred cEEEEeeEEEEECCEE----EeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---cCCCCCCceEEEECCEEccc
Confidence 4799999999998766 9999999999999999999999999999999999997 6 699999998542
Q ss_pred -------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCC-CCCccHHHHHHHHHHhhcC------CCccCCCCCCcCC
Q 021362 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (313)
Q Consensus 149 -------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~------~~~~~~~LSgG~k 214 (313)
...++|++|++.. ++ .|+++|+.+.....+. ........+.++++.++.. .+..+.+|||||+
T Consensus 93 ~~~~~~~~~~i~~v~q~~~l-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~ 169 (276)
T PRK14271 93 YRDVLEFRRRVGMLFQRPNP-FP--MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQ 169 (276)
T ss_pred cchhHHHhhheEEeccCCcc-CC--ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHH
Confidence 2358999999653 33 6999999876432221 1112223456677777642 2456679999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchHH
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~ev 281 (313)
||++||++++.++++|++|+|+..||. .+.+.|.++.+ ..|++|||++++.. |++ |++++.|+++++
T Consensus 170 qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~ 249 (276)
T PRK14271 170 QLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL 249 (276)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999 34455555433 24799999999876 555 899999998887
Q ss_pred HH
Q 021362 282 AK 283 (313)
Q Consensus 282 ~~ 283 (313)
..
T Consensus 250 ~~ 251 (276)
T PRK14271 250 FS 251 (276)
T ss_pred Hh
Confidence 54
No 188
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-34 Score=258.29 Aligned_cols=200 Identities=14% Similarity=0.097 Sum_probs=157.0
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC---CCceeecCCCCC----
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKASSFDSQVKP---- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p---~~G~i~~~g~~~---- 148 (313)
++|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|++... | ++|+|.++|++.
T Consensus 5 ~~i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~~~~~~G~i~~~g~~~~~~~ 79 (253)
T PRK14261 5 IILSTKNLNLWYGEKH----ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLI-PGCRITGDILYNGENIMDSG 79 (253)
T ss_pred ceEEEeeeEEEECCee----eeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCC-CCCCcceEEEECCEEccccc
Confidence 4799999999998766 999999999999999999999999999999999987500 2 489999998653
Q ss_pred ------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC-CccHHHHHHHHHHhhc------CCCccCCCCCCcCCC
Q 021362 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~LSgG~kq 215 (313)
...++|++|++..+ . .|++||+.+....++... ......+.++++.++. ..+..+.+||+||+|
T Consensus 80 ~~~~~~~~~i~~~~q~~~~~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 80 ADVVALRRKIGMVFQRPNPF-P--KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQ 156 (253)
T ss_pred cchhhhhceEEEEecCCccC-c--ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHH
Confidence 23489999996543 3 499999988655443221 1223456667776653 235677799999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
|++||++++.+++++++|+|+..||. .+.+.|+++.+ ..+++|||++++.. |++ |+++..|+++++.
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 99999999999999999999999999 44455555433 24799999999875 554 8999999988775
Q ss_pred H
Q 021362 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 237 ~ 237 (253)
T PRK14261 237 E 237 (253)
T ss_pred h
Confidence 3
No 189
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-34 Score=257.24 Aligned_cols=198 Identities=11% Similarity=0.107 Sum_probs=157.2
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC-----CceeecCCCCC--
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSFDSQVKP-- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~-----~G~i~~~g~~~-- 148 (313)
++|+++|+++.|++.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |+ +|+|.++|.+.
T Consensus 3 ~~l~~~~l~~~~~~~~----il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~~~ 75 (251)
T PRK14249 3 PKIKIRGVNFFYHKHQ----VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND---IVSGARLEGAVLLDNENIYS 75 (251)
T ss_pred ceEEEEEEEEEECCee----EecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---ccccCCcccEEEECCEEccc
Confidence 3699999999998765 9999999999999999999999999999999999998 87 69999998653
Q ss_pred --------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC-CccHHHHHHHHHHhhc------CCCccCCCCCCcC
Q 021362 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGV 213 (313)
Q Consensus 149 --------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~LSgG~ 213 (313)
.+.++|++|++..+ + .|+.||+.+....++... ....+.+.++++.++. ..+..+.+|||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq 152 (251)
T PRK14249 76 PNLDVVNLRKRVGMVFQQPNPF-P--KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQ 152 (251)
T ss_pred cccChHHhhceEEEEecCCccC-c--CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHH
Confidence 23599999996543 3 499999987654433321 1123445566666653 2356777999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchH
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~e 280 (313)
+||++||++++.++++|++|+|+..||. .+++.|+++.+ ..+++|||++++.. |++ |++++.|++.+
T Consensus 153 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 153 QQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 9999999999999999999999999999 44555555532 24799999999886 554 88888998887
Q ss_pred HHH
Q 021362 281 VAK 283 (313)
Q Consensus 281 v~~ 283 (313)
+..
T Consensus 233 ~~~ 235 (251)
T PRK14249 233 IFS 235 (251)
T ss_pred HHh
Confidence 743
No 190
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=5.8e-34 Score=253.88 Aligned_cols=178 Identities=14% Similarity=0.119 Sum_probs=145.9
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
++|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 6 ~~i~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 78 (225)
T PRK10247 6 PLLQLQNVGYLAGDAK----ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDISTLKPEI 78 (225)
T ss_pred ceEEEeccEEeeCCce----eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEcCcCCHHH
Confidence 3799999999998766 9999999999999999999999999999999999999 9999999998653
Q ss_pred -CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhc
Q 021362 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 -~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
...++|++|++.. +. .|+.||+.+....++. .....++.++++.++.. .+.++.+||+||+||++||++++
T Consensus 79 ~~~~i~~~~q~~~l-~~--~tv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 79 YRQQVSYCAQTPTL-FG--DTVYDNLIFPWQIRNQ--QPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred HHhccEEEeccccc-cc--ccHHHHHHhHHhhcCC--ChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 2358999999654 33 4999999875443322 12345667888888753 35677899999999999999999
Q ss_pred cCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHH
Q 021362 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAM 265 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~ 265 (313)
.+++++++|+|+..||. .+.+.|.++.+ ..+++|||++++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~ 202 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN 202 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH
Confidence 99999999999999999 34455555532 2479999999874
No 191
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=2.8e-34 Score=257.84 Aligned_cols=197 Identities=17% Similarity=0.216 Sum_probs=159.6
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------CCe
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDV 151 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------~~~ 151 (313)
|+++|+++.|++.. +|+|+||++.+||+++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.
T Consensus 1 i~i~~l~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~i~g~~~~~~~~~~~~ 73 (237)
T TIGR00968 1 IEIANISKRFGSFQ----ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ---PDSGRIRLNGQDATRVHARDRK 73 (237)
T ss_pred CEEEEEEEEECCee----eeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhcC
Confidence 46899999998766 9999999999999999999999999999999999998 9999999998653 235
Q ss_pred EEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCceE
Q 021362 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar~ 229 (313)
++|++|++..+. .+|+.||+.+....++.......+.+.++++.++.. .+..+..||+||+||++||++++.++++
T Consensus 74 i~~~~q~~~~~~--~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (237)
T TIGR00968 74 IGFVFQHYALFK--HLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQV 151 (237)
T ss_pred EEEEecChhhcc--CCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 899999965433 479999998765443332223345567788887743 4566779999999999999999999999
Q ss_pred EEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 230 VIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 230 Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+++|+|+..||. .+++.|.++.. ..+++||+++++.. |++ |++++.|+.+++..
T Consensus 152 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 999999999999 45556655533 24799999998766 554 89988888877754
No 192
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-34 Score=256.77 Aligned_cols=196 Identities=15% Similarity=0.174 Sum_probs=158.6
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------CCe
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDV 151 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------~~~ 151 (313)
|+++|+++.|++ . +|+|+||+|.+||+++|+||||||||||+++|+|+++ |++|+|+++|.+. .+.
T Consensus 1 l~~~~l~~~~~~-~----~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~---p~~G~v~i~g~~~~~~~~~~~~ 72 (235)
T cd03299 1 LKVENLSKDWKE-F----KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK---PDSGKILLNGKDITNLPPEKRD 72 (235)
T ss_pred CeeEeEEEEeCC-c----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcCcCChhHcC
Confidence 468999999975 3 7999999999999999999999999999999999999 9999999999653 236
Q ss_pred EEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCceE
Q 021362 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar~ 229 (313)
++|++|+...++ .+|+.||+.+.....+.......+.+.++++.++.. .+.++.+||+||+||++||++++.++++
T Consensus 73 i~~~~q~~~~~~--~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 150 (235)
T cd03299 73 ISYVPQNYALFP--HMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKI 150 (235)
T ss_pred EEEEeecCccCC--CccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 899999965443 489999998765444332223344567788888743 4567779999999999999999999999
Q ss_pred EEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 230 VIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 230 Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+++|+|+..||. .+++.|+++.. ..+++||+++++.. |++ |++++.|+++++..
T Consensus 151 lllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 219 (235)
T cd03299 151 LLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK 219 (235)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 999999999999 55666666543 24799999999875 554 89998888776643
No 193
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-34 Score=260.96 Aligned_cols=202 Identities=11% Similarity=0.061 Sum_probs=157.6
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcc--cCCCCceeecCCCCC----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVKP---- 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~--~~p~~G~i~~~g~~~---- 148 (313)
.++|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++. ..|++|+|.++|.+.
T Consensus 23 ~~~l~~~nl~~~~~~~~----il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~ 98 (272)
T PRK14236 23 QTALEVRNLNLFYGDKQ----ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK 98 (272)
T ss_pred CcEEEEEEEEEEECCee----EeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc
Confidence 45799999999998765 99999999999999999999999999999999999860 002799999998653
Q ss_pred ------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC-CccHHHHHHHHHHhhcC------CCccCCCCCCcCCC
Q 021362 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~LSgG~kq 215 (313)
...++|++|+... +. .|+.||+.+.....+... ....+++.++++.++.. .+..+.+|||||+|
T Consensus 99 ~~~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 175 (272)
T PRK14236 99 VDVAELRRRVGMVFQRPNP-FP--KSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQ 175 (272)
T ss_pred cCHHHHhccEEEEecCCcc-Cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHH
Confidence 2358999999643 33 399999987654333211 11234566777776642 34567799999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
|++||++++.+++++++|+|+..||. .+++.|.++.+. .+++|||++++.. |++ |++++.|+++++.
T Consensus 176 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 176 RLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred HHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHh
Confidence 99999999999999999999999999 445555555332 4799999999876 555 8999999888774
Q ss_pred H
Q 021362 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 256 ~ 256 (272)
T PRK14236 256 T 256 (272)
T ss_pred c
Confidence 3
No 194
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=4.1e-34 Score=284.04 Aligned_cols=199 Identities=14% Similarity=0.106 Sum_probs=159.5
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh--cccCCCCceeecC-----------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDS----------- 144 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~--~~~~p~~G~i~~~----------- 144 (313)
|+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+|+|+|++ + |++|+|.++
T Consensus 1 l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~---p~~G~i~~~~~~~~~~~~~~ 73 (520)
T TIGR03269 1 IEVKNLTKKFDGKE----VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYE---PTSGRIIYHVALCEKCGYVE 73 (520)
T ss_pred CEEEEEEEEECCeE----eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCC---CCceEEEEeccccccccccc
Confidence 57899999998765 999999999999999999999999999999999996 7 999999986
Q ss_pred ------------CCC------------------CCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHH
Q 021362 145 ------------QVK------------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC 194 (313)
Q Consensus 145 ------------g~~------------------~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~ 194 (313)
|.+ ..+.++|++|+...++. .+|+++|+.+.....+.+.....+++.++
T Consensus 74 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~ 152 (520)
T TIGR03269 74 RPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYG-DDTVLDNVLEALEEIGYEGKEAVGRAVDL 152 (520)
T ss_pred cccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCC-CCCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 211 12348999997333332 47999999887654444333344577888
Q ss_pred HHHhhcC--CCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHH
Q 021362 195 LKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTA 264 (313)
Q Consensus 195 l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~ 264 (313)
++.++.. .++++.+|||||||||+||+|++.++++|++|+|+..||. .+++.|+++.+ .+|+||||++.+
T Consensus 153 l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~ 232 (520)
T TIGR03269 153 IEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVI 232 (520)
T ss_pred HHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH
Confidence 9998843 4567789999999999999999999999999999999999 44555566643 247999999998
Q ss_pred HH---HHh----hcccccCCchHHHHH
Q 021362 265 MQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 265 ~~---rv~----griv~~G~~~ev~~~ 284 (313)
.. |++ |+++..|.++++...
T Consensus 233 ~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 233 EDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred HHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 76 555 888888988887654
No 195
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-34 Score=258.24 Aligned_cols=199 Identities=14% Similarity=0.117 Sum_probs=158.0
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCceeecCCCCC-
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-----~~G~i~~~g~~~- 148 (313)
+++|+++|+++.|++.. +|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|++.
T Consensus 5 ~~~l~~~~l~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~---~~~~~~~~G~i~~~g~~i~ 77 (259)
T PRK14260 5 IPAIKVKDLSFYYNTSK----AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISE---LEGPVKVEGVVDFFGQNIY 77 (259)
T ss_pred cceEEEEEEEEEECCeE----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcC---cccCCccceEEEECCEecc
Confidence 45799999999998765 9999999999999999999999999999999999987 5 489999998653
Q ss_pred ---------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCC-CCCccHHHHHHHHHHhhc------CCCccCCCCCCc
Q 021362 149 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRN------QGSVYAPSFDHG 212 (313)
Q Consensus 149 ---------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~------~~~~~~~~LSgG 212 (313)
...++|++|++..+ . +|++||+.+.....+. +.....+.+.++++.++. ..+..+.+||+|
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~l~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G 154 (259)
T PRK14260 78 DPRININRLRRQIGMVFQRPNPF-P--MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGG 154 (259)
T ss_pred ccccchHhhhhheEEEecccccC-C--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHH
Confidence 13589999996543 2 6999999876543321 222233456677777663 245567799999
Q ss_pred CCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HH--h-------hcccc
Q 021362 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RV--L-------KRHIS 274 (313)
Q Consensus 213 ~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv--~-------griv~ 274 (313)
|+||++||++++.++++|++|+|+..||. .+++.|.++... .+++|||++++.. |+ + |++++
T Consensus 155 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 234 (259)
T PRK14260 155 QQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVE 234 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEE
Confidence 99999999999999999999999999998 455666555432 4799999999976 32 2 78888
Q ss_pred cCCchHHHH
Q 021362 275 TGKPPDVAK 283 (313)
Q Consensus 275 ~G~~~ev~~ 283 (313)
.|++.++..
T Consensus 235 ~~~~~~~~~ 243 (259)
T PRK14260 235 FGVTTQIFS 243 (259)
T ss_pred eCCHHHHhc
Confidence 888888743
No 196
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-34 Score=258.73 Aligned_cols=200 Identities=12% Similarity=0.086 Sum_probs=154.9
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc--CCCCceeecCCCCC-----
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~--~p~~G~i~~~g~~~----- 148 (313)
++|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|++... .|++|+|.++|.+.
T Consensus 9 ~~l~i~~v~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 84 (264)
T PRK14243 9 TVLRTENLNVYYGSFL----AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV 84 (264)
T ss_pred eEEEEeeeEEEECCEE----EeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccccc
Confidence 3799999999998765 999999999999999999999999999999999998510 02799999998653
Q ss_pred -----CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc------CCCccCCCCCCcCCCcc
Q 021362 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDPV 217 (313)
Q Consensus 149 -----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~~~~LSgG~kqRv 217 (313)
...++|++|++..+ . .|+.+|+.+.....+.. ....+++.++++.++. ..+..+.+|||||+||+
T Consensus 85 ~~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 85 DPVEVRRRIGMVFQKPNPF-P--KSIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRL 160 (264)
T ss_pred ChHHHhhhEEEEccCCccc-c--ccHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHH
Confidence 23589999996433 3 49999998765433221 1223445556666553 23556779999999999
Q ss_pred hhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HHh-------------hccccc
Q 021362 218 EDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL-------------KRHIST 275 (313)
Q Consensus 218 ~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv~-------------griv~~ 275 (313)
+||++++.++++|++|+|+..||. .+++.|.++.+. .|++|||++++.. |++ |++++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 999999999999999999999999 445555555432 4799999999887 432 688888
Q ss_pred CCchHHHH
Q 021362 276 GKPPDVAK 283 (313)
Q Consensus 276 G~~~ev~~ 283 (313)
|+++++..
T Consensus 241 ~~~~~~~~ 248 (264)
T PRK14243 241 DRTEKIFN 248 (264)
T ss_pred CCHHHHHh
Confidence 88888854
No 197
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-34 Score=259.67 Aligned_cols=201 Identities=10% Similarity=0.075 Sum_probs=155.3
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc--ccCCCCceeecCCCCC-----
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~--~~~p~~G~i~~~g~~~----- 148 (313)
++|+++|+++.|++.. +|+|+||+|++|++++|+|+||||||||+++|+|+++ ..+|++|+|.++|.+.
T Consensus 23 ~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 98 (271)
T PRK14238 23 VVFDTQNLNLWYGEDH----ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98 (271)
T ss_pred eEEEEeeeEEEECCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence 3799999999998765 9999999999999999999999999999999999985 1124899999998653
Q ss_pred -----CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCC-ccHHHHHHHHHHhh------cCCCccCCCCCCcCCCc
Q 021362 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLR------NQGSVYAPSFDHGVGDP 216 (313)
Q Consensus 149 -----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~-~~~~~~~~~l~~l~------~~~~~~~~~LSgG~kqR 216 (313)
...++|++|++..+ . .|+.||+.+.....+.... .....+.+.++.++ ...+.++.+|||||+||
T Consensus 99 ~~~~~~~~i~~v~q~~~~~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qr 175 (271)
T PRK14238 99 SVEELRTNVGMVFQKPNPF-P--KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQR 175 (271)
T ss_pred cHHHHhhhEEEEecCCccc-c--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHH
Confidence 23589999996543 3 4999999876543332211 11233455555543 22355677999999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++||++++.++++|++|+|+..||. .+.+.|.++.. ..+++|||++++.. |++ |+++..|++.++..
T Consensus 176 v~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 255 (271)
T PRK14238 176 LCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFS 255 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 9999999999999999999999999 44445555433 24799999999876 554 89999998877743
No 198
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-34 Score=256.50 Aligned_cols=200 Identities=15% Similarity=0.101 Sum_probs=155.8
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC---CCceeecCCCCC----
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKASSFDSQVKP---- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p---~~G~i~~~g~~~---- 148 (313)
+||+++|+++.|++.. +|+++||+|.+||+++|+||||||||||+++|+|+++.. | ++|+|.++|.+.
T Consensus 4 ~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14255 4 KIITSSDVHLFYGKFE----ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLI-PGVTITGNVSLRGQNIYAPN 78 (252)
T ss_pred ceEEEEeEEEEECCee----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccC-CCCCcccEEEEcCEEccccc
Confidence 3699999999998755 999999999999999999999999999999999986300 3 589999999653
Q ss_pred ------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCc-cHHHHHHHHHHhhc------CCCccCCCCCCcCCC
Q 021362 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF-NPLLLLNCLKNLRN------QGSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~------~~~~~~~~LSgG~kq 215 (313)
...++|++|++..+ . .|+.+|+.+.....+..... ..+.+.+.++.++. ..+..+.+||+||+|
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~-~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 79 EDVVQLRKQVGMVFQQPNPF-P--FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQ 155 (252)
T ss_pred ccHHHhcCeEEEEECCCccC-C--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHH
Confidence 23589999996433 3 59999998765443322111 12345566666653 234567799999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
|++||++++.++++|++|+|+..||. .+.+.|+++.+ ..|++|||++++.. |++ |++++.|++.++.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999 44555555533 24799999999876 555 8999999888775
Q ss_pred H
Q 021362 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 236 ~ 236 (252)
T PRK14255 236 L 236 (252)
T ss_pred c
Confidence 3
No 199
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=7.5e-34 Score=252.70 Aligned_cols=185 Identities=18% Similarity=0.120 Sum_probs=145.0
Q ss_pred EEEEccceEEccccc---cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecC--CC--CC-
Q 021362 77 VVEARCMDEVYDALA---QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS--QV--KP- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~---~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~--g~--~~- 148 (313)
||+++|+++.|+... ....+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++ |. +.
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~~~g~~~~~~ 77 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL---PDSGRILVRHEGAWVDLA 77 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEEecCCCccchh
Confidence 489999999996411 01238999999999999999999999999999999999999 999999997 42 21
Q ss_pred -----------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCC
Q 021362 149 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVG 214 (313)
Q Consensus 149 -----------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~k 214 (313)
...++|++|++..++ .+|+.||+.+.....+.......+++.++++.++.. .+.++.+||+||+
T Consensus 78 ~~~~~~~~~~~~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~ 155 (224)
T TIGR02324 78 QASPREVLEVRRKTIGYVSQFLRVIP--RVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQ 155 (224)
T ss_pred hcCHHHHHHHHhcceEEEecccccCC--CccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHH
Confidence 235899999965433 489999998765433432223345677888888743 2456779999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
||++||++++.++++|++|+|+..||. .+.+.|+++.++ .+++|||++++..
T Consensus 156 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~ 214 (224)
T TIGR02324 156 QRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVREL 214 (224)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 999999999999999999999999999 445555555332 4799999888753
No 200
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=3.7e-34 Score=284.88 Aligned_cols=204 Identities=15% Similarity=0.182 Sum_probs=161.0
Q ss_pred cEEEEccceEEccccc-------cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC
Q 021362 76 PVVEARCMDEVYDALA-------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~-------~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~ 148 (313)
++|+++|+++.|+... ....+|+++||+|++|++++|+||||||||||+|+|+|++ |++|+|+++|.+.
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~----~~~G~i~~~g~~i 349 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI----NSQGEIWFDGQPL 349 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC----CCCcEEEECCEEc
Confidence 4799999999996210 0123899999999999999999999999999999999998 7899999998542
Q ss_pred -----------CCeEEEEecCCCCCCcccCCcccChHHHHHhcC--CCCCccHHHHHHHHHHhhcC---CCccCCCCCCc
Q 021362 149 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG--APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHG 212 (313)
Q Consensus 149 -----------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~--~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG 212 (313)
...++|++|++.....+.+|+.||+.+....++ .+.....+++.++++.++.. .++++.+||||
T Consensus 350 ~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 429 (529)
T PRK15134 350 HNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGG 429 (529)
T ss_pred cccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHH
Confidence 235899999963112234899999988654332 22222345678889988853 46677899999
Q ss_pred CCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCC
Q 021362 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 213 ~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~ 277 (313)
|||||+||++++.++++|++|+|+..||. .+++.|+++.++ .|+||||++++.. |++ |++++.|+
T Consensus 430 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~ 509 (529)
T PRK15134 430 QRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGD 509 (529)
T ss_pred HHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcC
Confidence 99999999999999999999999999999 456666665432 4799999999886 655 99999998
Q ss_pred chHHHH
Q 021362 278 PPDVAK 283 (313)
Q Consensus 278 ~~ev~~ 283 (313)
++++..
T Consensus 510 ~~~~~~ 515 (529)
T PRK15134 510 CERVFA 515 (529)
T ss_pred HHHHhc
Confidence 888753
No 201
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=5.1e-34 Score=283.37 Aligned_cols=203 Identities=17% Similarity=0.219 Sum_probs=159.2
Q ss_pred ccEEEEccceEEcccc-ccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecC-CCC-----
Q 021362 75 IPVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS-QVK----- 147 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~-~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~-g~~----- 147 (313)
.++|+++|+++.|++. .+...+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++ |.+
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~g~~~~~~~ 353 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE---PTSGEVNVRVGDEWVDMT 353 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEEecCCcccccc
Confidence 3489999999999531 011238999999999999999999999999999999999999 999999995 421
Q ss_pred ---------CCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC-------CCccCCCCCC
Q 021362 148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------GSVYAPSFDH 211 (313)
Q Consensus 148 ---------~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------~~~~~~~LSg 211 (313)
..+.++|++|++..++ .+|+.+|+.+.... +.+.....+++.++++.++.. .++++.+|||
T Consensus 354 ~~~~~~~~~~~~~i~~v~q~~~l~~--~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSg 430 (520)
T TIGR03269 354 KPGPDGRGRAKRYIGILHQEYDLYP--HRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSE 430 (520)
T ss_pred ccchhhHHHHhhhEEEEccCcccCC--CCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCH
Confidence 1235899999964333 48999999875432 222222345677888888853 3567789999
Q ss_pred cCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccC
Q 021362 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTG 276 (313)
Q Consensus 212 G~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G 276 (313)
||||||+||+|++.++++|++|+|+..||. .+++.|+++.++ .|++|||++++.. |++ |++++.|
T Consensus 431 Gq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g 510 (520)
T TIGR03269 431 GERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIG 510 (520)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999 455555555332 4799999999886 554 8888888
Q ss_pred CchHHHH
Q 021362 277 KPPDVAK 283 (313)
Q Consensus 277 ~~~ev~~ 283 (313)
+++++..
T Consensus 511 ~~~~~~~ 517 (520)
T TIGR03269 511 DPEEIVE 517 (520)
T ss_pred CHHHHHh
Confidence 8877654
No 202
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=8.2e-34 Score=257.00 Aligned_cols=190 Identities=17% Similarity=0.145 Sum_probs=150.6
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
++|+++|+++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++. ..++|+
T Consensus 3 ~~l~~~~l~~~~~~~~----vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~~~---~~i~~v 72 (251)
T PRK09544 3 SLVSLENVSVSFGQRR----VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA---PDEGVIKRNGK---LRIGYV 72 (251)
T ss_pred cEEEEeceEEEECCce----EEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCc---cCEEEe
Confidence 3799999999998766 9999999999999999999999999999999999999 99999999873 359999
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCceEEEEc
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d 233 (313)
+|++.....-..++.+++.+ . .....+++.++++.++.. .+.++.+|||||+||++||++++.++++|++|
T Consensus 73 ~q~~~~~~~l~~~~~~~~~~----~---~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD 145 (251)
T PRK09544 73 PQKLYLDTTLPLTVNRFLRL----R---PGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLD 145 (251)
T ss_pred ccccccccccChhHHHHHhc----c---ccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99964322111244444321 1 112245677888888743 45677799999999999999999999999999
Q ss_pred CCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh---hcccccCCchHHH
Q 021362 234 GNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL---KRHISTGKPPDVA 282 (313)
Q Consensus 234 ~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~---griv~~G~~~ev~ 282 (313)
+|+..||. .+++.|.++.. ..|++|||++++.. |++ +++++.|+++++.
T Consensus 146 EPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~~i~~~g~~~~~~ 208 (251)
T PRK09544 146 EPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNHHICCSGTPEVVS 208 (251)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECCceEeeCCHHHHh
Confidence 99999999 45555555533 24799999999876 554 7777889888764
No 203
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=7.1e-34 Score=250.21 Aligned_cols=177 Identities=15% Similarity=0.031 Sum_probs=145.5
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-----CCe
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PDV 151 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-----~~~ 151 (313)
||+++|+++.|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+. ...
T Consensus 2 ~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 74 (207)
T PRK13539 2 MLEGEDLACVRGGRV----LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP---PAAGTIKLDGGDIDDPDVAEA 74 (207)
T ss_pred EEEEEeEEEEECCeE----EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEeCcchhhHhh
Confidence 699999999998766 9999999999999999999999999999999999999 9999999999653 235
Q ss_pred EEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCceE
Q 021362 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar~ 229 (313)
++|++|+...++ .+|+.+|+.+.....+ ...+++.++++.++.. .+.++.+|||||+||++||++++.++++
T Consensus 75 ~~~~~~~~~~~~--~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 148 (207)
T PRK13539 75 CHYLGHRNAMKP--ALTVAENLEFWAAFLG----GEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPI 148 (207)
T ss_pred cEEecCCCcCCC--CCcHHHHHHHHHHhcC----CcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 789988754333 4899999987544332 1234577888888743 3566779999999999999999999999
Q ss_pred EEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH
Q 021362 230 VIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 230 Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
|++|+|+..||. .+++.|.++.++ .+++|||++++..
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 149 WILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG 192 (207)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc
Confidence 999999999998 455555555332 4699999998876
No 204
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5e-34 Score=252.19 Aligned_cols=184 Identities=16% Similarity=0.166 Sum_probs=145.3
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 148 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--------- 148 (313)
+++ +|+|.|++.. + |+||+|++ |+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~~~-~l~~~~~~~~----~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 70 (214)
T cd03297 2 LCV-DIEKRLPDFT----L--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK---PDGGTIVLNGTVLFDSRKKINL 70 (214)
T ss_pred cee-eeeEecCCee----e--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccccchhhh
Confidence 455 9999999864 5 99999999 9999999999999999999999999 9999999998653
Q ss_pred ---CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhh
Q 021362 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al 223 (313)
.+.++|++|+...++ .+|+.+|+.+..... ......+++.++++.++.. .+.++.+||||||||++||+++
T Consensus 71 ~~~~~~i~~~~q~~~~~~--~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 146 (214)
T cd03297 71 PPQQRKIGLVFQQYALFP--HLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARAL 146 (214)
T ss_pred hhHhhcEEEEecCCccCC--CCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHH
Confidence 235899999965443 479999998764322 1122345677888888743 3567779999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccC
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTG 276 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G 276 (313)
+.+++++++|+|+..||. .+++.|+++.++ .+++|||++++.. |++ |++++.|
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 147 AAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999 455555555332 4799999999865 443 5655443
No 205
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.5e-33 Score=247.93 Aligned_cols=179 Identities=14% Similarity=0.036 Sum_probs=146.4
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-----C
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-----D 150 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~-----~ 150 (313)
++|+++|+++.|++.. +|+++||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.. +
T Consensus 10 ~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~i~~~~~~~ 82 (214)
T PRK13543 10 PLLAAHALAFSRNEEP----VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH---VESGQIQIDGKTATRGDRSR 82 (214)
T ss_pred ceEEEeeEEEecCCce----eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCeeEEECCEEccchhhhh
Confidence 4799999999998766 9999999999999999999999999999999999999 99999999996532 3
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCce
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar 228 (313)
.++|++|++..+. .+|+.||+.+....++. ...+.+.++++.++. ..+.++.+||+|||||+++|++++.+++
T Consensus 83 ~i~~~~q~~~~~~--~~t~~e~l~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (214)
T PRK13543 83 FMAYLGHLPGLKA--DLSTLENLHFLCGLHGR---RAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAP 157 (214)
T ss_pred ceEEeecCccccc--CCcHHHHHHHHHHhcCC---cHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 4899999865433 47999999876543331 233456778888773 3466778999999999999999999999
Q ss_pred EEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH
Q 021362 229 VVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 229 ~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
+|++|+|+..||. .+++.|+++.++ .+++|||++++..
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 202 (214)
T PRK13543 158 LWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPP 202 (214)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhh
Confidence 9999999999999 344444444322 4799999998875
No 206
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-33 Score=256.08 Aligned_cols=200 Identities=14% Similarity=0.113 Sum_probs=159.1
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCC------CCC
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ------VKP 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g------~~~ 148 (313)
.++|+++|+++.|++.. +|+|+||++.+||+++|+||||||||||+++|+|+++ |++|+|.++| .+.
T Consensus 8 ~~~i~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~---~~~G~v~~~G~~~~~g~~~ 80 (257)
T PRK14246 8 EDVFNISRLYLYINDKA----ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE---IYDSKIKVDGKVLYFGKDI 80 (257)
T ss_pred hhheeeeeEEEecCCce----eEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCcCceeEcCEEEECCccc
Confidence 35799999999999877 9999999999999999999999999999999999998 9997766655 332
Q ss_pred --------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCC-CCccHHHHHHHHHHhhcC------CCccCCCCCCcC
Q 021362 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 213 (313)
Q Consensus 149 --------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~------~~~~~~~LSgG~ 213 (313)
...++|++|++..++ .+|+.+|+.+.....+.. ......++.++++.++.. .+..+..||+||
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~ 158 (257)
T PRK14246 81 FQIDAIKLRKEVGMVFQQPNPFP--HLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQ 158 (257)
T ss_pred ccCCHHHHhcceEEEccCCccCC--CCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHH
Confidence 245899999976443 479999998865433221 122334567788887742 345667999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchH
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~e 280 (313)
+||++||++++.+++++++|+|+..||. .+++.|.++.+ ..|++||+++++.. |++ |++++.|.+++
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~ 238 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNE 238 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999 45555555533 24799999999865 554 89999998888
Q ss_pred HHH
Q 021362 281 VAK 283 (313)
Q Consensus 281 v~~ 283 (313)
+..
T Consensus 239 ~~~ 241 (257)
T PRK14246 239 IFT 241 (257)
T ss_pred HHh
Confidence 754
No 207
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-34 Score=281.47 Aligned_cols=193 Identities=13% Similarity=0.141 Sum_probs=155.4
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
++|+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~l~~~~l~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~~~ 75 (501)
T PRK11288 3 PYLSFDGIGKTFPGVK----ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ---PDAGSILIDGQEMRFASTTA 75 (501)
T ss_pred ceEEEeeeEEEECCEE----EEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHHH
Confidence 5799999999998766 9999999999999999999999999999999999999 9999999998653
Q ss_pred --CCeEEEEecCCCCCCcccCCcccChHHHHHh--cC-CCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhh
Q 021362 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR--RG-APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 149 --~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~--~~-~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~ 221 (313)
.+.++|++|++..++ .+|+.+|+.+.... .+ .......+++.++++.++.. .++++.+||||||||++||+
T Consensus 76 ~~~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lar 153 (501)
T PRK11288 76 ALAAGVAIIYQELHLVP--EMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAK 153 (501)
T ss_pred HHhCCEEEEEechhccC--CCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHH
Confidence 235899999865433 48999999875321 12 11122345677888888843 45677799999999999999
Q ss_pred hhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCC
Q 021362 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~ 277 (313)
+++.++++|++|+|+..||. .+++.|+++.++ .|++|||++++.. |++ |+++..+.
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 99999999999999999999 455555555432 4799999999876 555 78776554
No 208
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=8.2e-34 Score=254.71 Aligned_cols=167 Identities=14% Similarity=0.058 Sum_probs=133.0
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------CCeEEEEecCCCCCCcccCC
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PDVATVLPMDGFHLYLSQLD 168 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------~~~i~~v~qd~~~~~~~~lt 168 (313)
+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. ...++|++|+...++ ..+|
T Consensus 36 il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~-~~~t 111 (236)
T cd03267 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ---PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLW-WDLP 111 (236)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEccccchhhcccEEEEcCCccccC-CCCc
Confidence 9999999999999999999999999999999999999 9999999998642 235889885433333 2489
Q ss_pred cccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----h
Q 021362 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----G 242 (313)
Q Consensus 169 v~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~ 242 (313)
+.||+.+....++.......+++.++++.++. ..+.++.+|||||+||++||++++.++++|++|+|+..||. .
T Consensus 112 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~ 191 (236)
T cd03267 112 VIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQEN 191 (236)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence 99999876554443322334456677887764 34567779999999999999999999999999999999999 4
Q ss_pred hHHHHHhhcc----ceEEEEcChHHHHH
Q 021362 243 VWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 243 ~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
+.+.|.++.+ ..+++|||++++..
T Consensus 192 l~~~l~~~~~~~~~tiiivsH~~~~~~~ 219 (236)
T cd03267 192 IRNFLKEYNRERGTTVLLTSHYMKDIEA 219 (236)
T ss_pred HHHHHHHHHhcCCCEEEEEecCHHHHHH
Confidence 5555555533 24799999998765
No 209
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-33 Score=256.56 Aligned_cols=201 Identities=13% Similarity=0.096 Sum_probs=155.0
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc--CCCCceeecCCCCC----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP---- 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~--~p~~G~i~~~g~~~---- 148 (313)
.++|+++|+++.|++.. +|+++||+|++||+++|+||||||||||+++|+|+++.. .|++|+|.++|.+.
T Consensus 18 ~~~l~~~nl~~~~~~~~----~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~ 93 (274)
T PRK14265 18 HSVFEVEGVKVFYGGFL----ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93 (274)
T ss_pred CceEEEeeEEEEeCCeE----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccccc
Confidence 35899999999998765 999999999999999999999999999999999998510 01689999998653
Q ss_pred ------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc------CCCccCCCCCCcCCCc
Q 021362 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDP 216 (313)
Q Consensus 149 ------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~~~~LSgG~kqR 216 (313)
...++|++|++..+ . .++.+|+.+.....+.. ....+.+.+.++.++. ..+.++.+|||||+||
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~-~--~tv~~nl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 94 INSVKLRRQVGMVFQRPNPF-P--KSIYENIAFAPRANGYK-GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQR 169 (274)
T ss_pred chhHHHhhcEEEEccCCccc-c--ccHHHHHHhHHHhcCch-HHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHH
Confidence 23589999996543 3 48999998764333221 1123344556666552 2355677999999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HH--h-----------hcccc
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RV--L-----------KRHIS 274 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv--~-----------griv~ 274 (313)
++||+|++.++++|++|+|+..||. .+.+.|.++.+. .+++|||++++.. |+ + |++++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 9999999999999999999999999 455555555432 4799999999976 32 1 67888
Q ss_pred cCCchHHHH
Q 021362 275 TGKPPDVAK 283 (313)
Q Consensus 275 ~G~~~ev~~ 283 (313)
.|++.++..
T Consensus 250 ~g~~~~~~~ 258 (274)
T PRK14265 250 FSPTEQMFG 258 (274)
T ss_pred eCCHHHHHh
Confidence 899888854
No 210
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=7e-34 Score=246.80 Aligned_cols=164 Identities=18% Similarity=0.106 Sum_probs=131.7
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC----------CCeEEEEecCCC-CCCc
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----------PDVATVLPMDGF-HLYL 164 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~----------~~~i~~v~qd~~-~~~~ 164 (313)
+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.++|++|++. .++.
T Consensus 7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR---PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 9999999999999999999999999999999999999 9999999998653 134899999963 2332
Q ss_pred ccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh-
Q 021362 165 SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG- 241 (313)
Q Consensus 165 ~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE- 241 (313)
.|+.||+.+.....+.......+++.++++.++. ..++++.+||+||+||++||++++.++++|++|+|+..||.
T Consensus 84 --~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 161 (190)
T TIGR01166 84 --ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPA 161 (190)
T ss_pred --ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 6999999876543333222234467788888774 34667779999999999999999999999999999999999
Q ss_pred ---hhHHHHHhhccc---eEEEEcChHHH
Q 021362 242 ---GVWKDVSSMFDE---KWFIEVDLDTA 264 (313)
Q Consensus 242 ---~~~~~l~~l~~~---~i~vtHd~~~~ 264 (313)
.+++.|.++.++ .+++|||++++
T Consensus 162 ~~~~~~~~l~~~~~~~~tili~sH~~~~~ 190 (190)
T TIGR01166 162 GREQMLAILRRLRAEGMTVVISTHDVDLA 190 (190)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeeccccC
Confidence 455555555332 47999998753
No 211
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.2e-33 Score=308.92 Aligned_cols=202 Identities=15% Similarity=0.093 Sum_probs=170.8
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
.+|+++||+|.|++. ...+|+|+||+|++||++||+||||||||||+|+|+|+++ |++|+|+++|.+.
T Consensus 1936 ~~L~v~nLsK~Y~~~--~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~---ptsG~I~i~G~~i~~~~~~~ 2010 (2272)
T TIGR01257 1936 DILRLNELTKVYSGT--SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT---VTSGDATVAGKSILTNISDV 2010 (2272)
T ss_pred ceEEEEEEEEEECCC--CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECcchHHHH
Confidence 479999999999852 1229999999999999999999999999999999999999 9999999999764
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
.+.+||++|++..+. .+|++|++.+....++.+.....+.+.++++.++. ..++++.+||||||||+++|+|++.+
T Consensus 2011 r~~IGy~pQ~~~L~~--~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~ 2088 (2272)
T TIGR01257 2011 HQNMGYCPQFDAIDD--LLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGC 2088 (2272)
T ss_pred hhhEEEEeccccCCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 245999999865444 48999999987777776554445567788888884 45778889999999999999999999
Q ss_pred ceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 227 HKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 227 ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
+++|++|||+..||+ .+|+.|+++.++ +|++||+++++.. |++ |+++..|+++++...
T Consensus 2089 P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2089 PPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 999999999999999 677777776543 4799999999987 655 999999999887544
No 212
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-33 Score=252.98 Aligned_cols=202 Identities=12% Similarity=0.116 Sum_probs=157.4
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc--ccCCCCceeecCCCCC----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASSFDSQVKP---- 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~--~~~p~~G~i~~~g~~~---- 148 (313)
|-+|+++||++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+.. ...|++|+|.++|.+.
T Consensus 1 ~~~l~~~~v~~~~~~~~----~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 76 (250)
T PRK14266 1 MYRIEVENLNTYFDDAH----ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA 76 (250)
T ss_pred CcEEEEEeEEEEeCCeE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccc
Confidence 45799999999998765 9999999999999999999999999999999999863 1113899999999653
Q ss_pred ------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC-CccHHHHHHHHHHhhc------CCCccCCCCCCcCCC
Q 021362 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~LSgG~kq 215 (313)
.+.++|++|++..+ . .|+.+|+.+.....+... ....+++.++++.++. ..+..+.+||+||+|
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~-~--~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~q 153 (250)
T PRK14266 77 VDVVELRKKVGMVFQKPNPF-P--KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQ 153 (250)
T ss_pred ccHHHHhhheEEEecCCccC-c--chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHH
Confidence 23599999996543 3 489999987644333211 1223456667777653 235567799999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
|++||++++.++++|++|+|+..||. .+.+.|+++... .+++||+++++.. +++ |++++.|++.++.
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 99999999999999999999999999 445555555332 4799999999987 443 8999999988874
Q ss_pred H
Q 021362 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 234 ~ 234 (250)
T PRK14266 234 I 234 (250)
T ss_pred h
Confidence 3
No 213
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-33 Score=254.02 Aligned_cols=198 Identities=14% Similarity=0.090 Sum_probs=156.5
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCceeecCCCCC--
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP-- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-----~~G~i~~~g~~~-- 148 (313)
.+|+++|+++.|++.. +|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 15 ~~l~~~~l~~~~~~~~----vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~sG~i~~~g~~~~~ 87 (265)
T PRK14252 15 QKSEVNKLNFYYGGYQ----ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHD---LYPGNHYEGEIILHPDNVNI 87 (265)
T ss_pred ceEEEEEEEEEECCee----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCCCcccEEEEcCccccc
Confidence 4799999999998765 9999999999999999999999999999999999986 5 799999987542
Q ss_pred ----------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCC-ccHHHHHHHHHHhhc------CCCccCCCCCC
Q 021362 149 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFDH 211 (313)
Q Consensus 149 ----------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~------~~~~~~~~LSg 211 (313)
...++|++|++..+ . .|+.||+.+.....+.... ...+++.++++.++. ..+..+.+||+
T Consensus 88 ~~~~~~~~~~~~~i~~~~q~~~~~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~ 164 (265)
T PRK14252 88 LSPEVDPIEVRMRISMVFQKPNPF-P--KSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSG 164 (265)
T ss_pred cccccCHHHHhccEEEEccCCcCC-c--chHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCH
Confidence 23589999996543 3 4999999876543333221 123455666666653 23456779999
Q ss_pred cCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCc
Q 021362 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKP 278 (313)
Q Consensus 212 G~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~ 278 (313)
||+||++||++++.+++++++|+|+..||. .+.+.|.++.. ..+++|||++++.. |++ |++++.|+.
T Consensus 165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~ 244 (265)
T PRK14252 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGAT 244 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999 44455555443 24799999999876 555 899999988
Q ss_pred hHHHH
Q 021362 279 PDVAK 283 (313)
Q Consensus 279 ~ev~~ 283 (313)
+++..
T Consensus 245 ~~~~~ 249 (265)
T PRK14252 245 DTIFI 249 (265)
T ss_pred HHHHh
Confidence 77743
No 214
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=9.1e-34 Score=280.31 Aligned_cols=196 Identities=16% Similarity=0.154 Sum_probs=156.8
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC--CCceeecCCCCC------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKASSFDSQVKP------ 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p--~~G~i~~~g~~~------ 148 (313)
+|+++|+++.|++.. +|+|+||++++|++++|+||||||||||+++|+|+++ | ++|+|.++|++.
T Consensus 1 ~l~i~~l~~~~~~~~----il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~---~~~~~G~i~~~g~~~~~~~~~ 73 (500)
T TIGR02633 1 LLEMKGIVKTFGGVK----ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP---HGTWDGEIYWSGSPLKASNIR 73 (500)
T ss_pred CEEEEeEEEEeCCeE----eecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCCHH
Confidence 488999999998766 9999999999999999999999999999999999997 7 799999998653
Q ss_pred ---CCeEEEEecCCCCCCcccCCcccChHHHHHhc--C--CCCCccHHHHHHHHHHhhcCC---CccCCCCCCcCCCcch
Q 021362 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--G--APWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVE 218 (313)
Q Consensus 149 ---~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~--~--~~~~~~~~~~~~~l~~l~~~~---~~~~~~LSgG~kqRv~ 218 (313)
...++|++|++..+. .+|+.+|+.+..... + .......+++.++++.++... ++++.+|||||||||+
T Consensus 74 ~~~~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ 151 (500)
T TIGR02633 74 DTERAGIVIIHQELTLVP--ELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVE 151 (500)
T ss_pred HHHhCCEEEEeeccccCC--CCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHH
Confidence 235899999965333 489999998764321 1 111223356778888888532 3557799999999999
Q ss_pred hhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHH
Q 021362 219 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 219 ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev 281 (313)
||++++.++++|++|+|+..||. .+++.|+++.++ .+++|||++++.. |++ |+++..|.++++
T Consensus 152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 99999999999999999999999 455555555433 4799999999876 554 888888877654
No 215
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.2e-33 Score=244.68 Aligned_cols=175 Identities=13% Similarity=0.012 Sum_probs=143.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
||+++|+++.|++.. +|+++||++++||+++|+||||||||||+++|+|+++ |++|+|+++|.+..
T Consensus 1 ml~~~~l~~~~~~~~----il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~ 73 (200)
T PRK13540 1 MLDVIELDFDYHDQP----LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN---PEKGEILFERQSIKKDLCTYQ 73 (200)
T ss_pred CEEEEEEEEEeCCee----EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeeEEECCCccccCHHHHH
Confidence 488999999998766 9999999999999999999999999999999999999 99999999997632
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCc
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~a 227 (313)
+.++|++|+...++ .+|+.+|+.+..... .....+.++++.++. ..+.++.+||+||+||++||++++.++
T Consensus 74 ~~i~~~~q~~~~~~--~~tv~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p 146 (200)
T PRK13540 74 KQLCFVGHRSGINP--YLTLRENCLYDIHFS-----PGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKA 146 (200)
T ss_pred hheEEeccccccCc--CCCHHHHHHHHHhcC-----cchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCC
Confidence 35899999855333 489999988764211 123467788887774 335566799999999999999999999
Q ss_pred eEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHH
Q 021362 228 KVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAM 265 (313)
Q Consensus 228 r~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~ 265 (313)
++|++|+|+..||. .+++.|+++.+ ..+++||+.+.+.
T Consensus 147 ~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 191 (200)
T PRK13540 147 KLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLN 191 (200)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhcc
Confidence 99999999999999 45555555432 2469999988764
No 216
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-33 Score=254.44 Aligned_cols=198 Identities=13% Similarity=0.090 Sum_probs=156.2
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC-----CceeecCCCCC--
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSFDSQVKP-- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~-----~G~i~~~g~~~-- 148 (313)
++|+++|+++.|++.. +|+|+||++++|++++|+|+||||||||+++|+|+++ |+ +|+|.++|++.
T Consensus 6 ~~l~~~nl~~~~~~~~----il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~g~i~~~G~i~~~g~~i~~ 78 (261)
T PRK14258 6 PAIKVNNLSFYYDTQK----ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQNIYE 78 (261)
T ss_pred ceEEEeeEEEEeCCee----EeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCccccceEEECCEEhhc
Confidence 4799999999998755 9999999999999999999999999999999999998 75 89999988652
Q ss_pred --------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCC-CCCccHHHHHHHHHHhhcC------CCccCCCCCCcC
Q 021362 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 213 (313)
Q Consensus 149 --------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~------~~~~~~~LSgG~ 213 (313)
.+.++|++|+... +. +|+.||+.+.....+. +.....+++.++++.++.. .+..+.+|||||
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq 155 (261)
T PRK14258 79 RRVNLNRLRRQVSMVHPKPNL-FP--MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQ 155 (261)
T ss_pred cccchHHhhccEEEEecCCcc-Cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHH
Confidence 2348999998653 33 6999999876443332 2222234567777777642 355677999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh---------hccc
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL---------KRHI 273 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~---------griv 273 (313)
+||++||++++.++++|++|+|+..||. .+.+.|.++.. ..+++|||++++.. |++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 9999999999999999999999999999 44555555432 24699999999876 432 5777
Q ss_pred ccCCchHHHH
Q 021362 274 STGKPPDVAK 283 (313)
Q Consensus 274 ~~G~~~ev~~ 283 (313)
..|+++++..
T Consensus 236 ~~~~~~~~~~ 245 (261)
T PRK14258 236 EFGLTKKIFN 245 (261)
T ss_pred EeCCHHHHHh
Confidence 8888888744
No 217
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-33 Score=280.33 Aligned_cols=202 Identities=14% Similarity=0.141 Sum_probs=157.8
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-CCceeecCCCCCC-----
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFDSQVKPP----- 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-~~G~i~~~g~~~~----- 149 (313)
++|+++|+++.|+.. +...+|+|+||+|++|++++|+||||||||||+|+|+|+++ | ++|+|.++|++..
T Consensus 258 ~~l~~~~l~~~~~~~-~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~~~G~i~~~g~~~~~~~~~ 333 (506)
T PRK13549 258 VILEVRNLTAWDPVN-PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYP---GRWEGEIFIDGKPVKIRNPQ 333 (506)
T ss_pred ceEEEecCccccccc-cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCcEEEECCEECCCCCHH
Confidence 479999999999421 01128999999999999999999999999999999999997 6 8999999986532
Q ss_pred ----CeEEEEecCCC--CCCcccCCcccChHHHHH--hcC---CCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCC
Q 021362 150 ----DVATVLPMDGF--HLYLSQLDAMEDPKEAHA--RRG---APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGD 215 (313)
Q Consensus 150 ----~~i~~v~qd~~--~~~~~~ltv~e~~~~~~~--~~~---~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kq 215 (313)
..++|++|++. .++ +.+|+.||+.+... ..+ .......+++.++++.++.. .++++.+|||||||
T Consensus 334 ~~~~~~i~~v~q~~~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kq 412 (506)
T PRK13549 334 QAIAQGIAMVPEDRKRDGIV-PVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQ 412 (506)
T ss_pred HHHHCCCEEeCcchhhCCCc-CCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHH
Confidence 34899999853 222 35899999987532 111 11122335678889998853 46677899999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev 281 (313)
||+||++++.++++|++|+|+..||. .+++.|.++.++ .|++|||++++.. |++ |+++..|+++++
T Consensus 413 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 413 KAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccC
Confidence 99999999999999999999999999 455555555433 4799999999987 554 899888887776
Q ss_pred H
Q 021362 282 A 282 (313)
Q Consensus 282 ~ 282 (313)
.
T Consensus 493 ~ 493 (506)
T PRK13549 493 T 493 (506)
T ss_pred C
Confidence 3
No 218
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=4.4e-34 Score=256.31 Aligned_cols=193 Identities=14% Similarity=0.165 Sum_probs=148.5
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------C
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------P 149 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--------~ 149 (313)
|+++|+++.|+... ..+|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 1 i~~~~l~~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 75 (237)
T cd03252 1 ITFEHVRFRYKPDG--PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV---PENGRVLVDGHDLALADPAWLR 75 (237)
T ss_pred CEEEEEEEecCCCC--ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCeehHhcCHHHHh
Confidence 46899999996421 128999999999999999999999999999999999999 9999999999653 2
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHH---------HHHHHHhh----cCCCccCCCCCCcCCCc
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLL---------LNCLKNLR----NQGSVYAPSFDHGVGDP 216 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~---------~~~l~~l~----~~~~~~~~~LSgG~kqR 216 (313)
+.++|++|++.. +. .|+.+|+.+... +. ....+ .++++.+. ...+.++.+||||||||
T Consensus 76 ~~i~~~~q~~~~-~~--~tv~~nl~~~~~--~~----~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qr 146 (237)
T cd03252 76 RQVGVVLQENVL-FN--RSIRDNIALADP--GM----SMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQR 146 (237)
T ss_pred hcEEEEcCCchh-cc--chHHHHhhccCC--CC----CHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHH
Confidence 458999999653 32 699999876321 11 11122 22233331 11245677999999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHHH
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~~ 284 (313)
++||++++.++++|++|+|+..||. .+.+.|+++.. ..+++|||++++.. +++ |++++.|+++++...
T Consensus 147 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 147 IAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE 226 (237)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 9999999999999999999999999 45555655543 24699999999865 444 899999988887654
No 219
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-33 Score=253.59 Aligned_cols=199 Identities=11% Similarity=0.052 Sum_probs=154.3
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcc--cCCCCceeecCCCCC-------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVKP------- 148 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~--~~p~~G~i~~~g~~~------- 148 (313)
-+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+.+. ..|++|+|.++|.+.
T Consensus 6 ~~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 81 (251)
T PRK14244 6 ASVKNLNLWYGSKQ----ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNV 81 (251)
T ss_pred EEeeeEEEEECCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccch
Confidence 46899999998665 99999999999999999999999999999999999740 003699999998652
Q ss_pred ---CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC--CccHHHHHHHHHHhhcC------CCccCCCCCCcCCCcc
Q 021362 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW--TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPV 217 (313)
Q Consensus 149 ---~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~--~~~~~~~~~~l~~l~~~------~~~~~~~LSgG~kqRv 217 (313)
...++|++|++..++ .|+.+|+.+....++... ....+.+.++++.++.. .+..+.+|||||+||+
T Consensus 82 ~~~~~~i~~v~q~~~~~~---~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 158 (251)
T PRK14244 82 VLLRAKVGMVFQKPNPFP---KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRL 158 (251)
T ss_pred HHHhhhEEEEecCccccc---CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHH
Confidence 235899999965433 389999987643333211 12234566778888742 2456679999999999
Q ss_pred hhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 218 EDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 218 ~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+||++++.++++|++|+|+..||. .+.+.|.++.. ..+++|||++++.. |++ |++++.|++.++..
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (251)
T PRK14244 159 CIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFK 237 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999 45555555532 24799999999876 555 89988898877643
No 220
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=2.2e-33 Score=266.19 Aligned_cols=190 Identities=16% Similarity=0.112 Sum_probs=159.9
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
+.|++++++|.|++.. ++++|||+|.+|||.+|+|.||||||||+++|.|+++ |++|+|+++|++..
T Consensus 3 ~~l~~~~itK~f~~~~----And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~---P~~GeI~v~G~~v~~~sP~d 75 (501)
T COG3845 3 PALEMRGITKRFPGVV----ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ---PDSGEIRVDGKEVRIKSPRD 75 (501)
T ss_pred ceEEEeccEEEcCCEE----ecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc---CCcceEEECCEEeccCCHHH
Confidence 4799999999999887 9999999999999999999999999999999999999 99999999997632
Q ss_pred ---CeEEEEecCCCCCCcccCCcccChHHHHHhc---CCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhh
Q 021362 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARR---GAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 150 ---~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~---~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~ 221 (313)
.-||+|+|+....+ .+||.||+.++.... ........+++.++.+++|. ..+.++..||-|+||||.|..
T Consensus 76 A~~~GIGMVhQHF~Lv~--~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlK 153 (501)
T COG3845 76 AIRLGIGMVHQHFMLVP--TLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILK 153 (501)
T ss_pred HHHcCCcEEeecccccc--ccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHH
Confidence 24899999944433 599999999876432 12334456677888888884 466788899999999999999
Q ss_pred hhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccc
Q 021362 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHIS 274 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~ 274 (313)
+|.+++++||+|+|+..|-+ ++++.++.+.++ +|||||-++++++ |+- |+++.
T Consensus 154 aLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg 220 (501)
T COG3845 154 ALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG 220 (501)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe
Confidence 99999999999999999998 677777777665 4799999999998 443 77664
No 221
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=2.4e-33 Score=245.10 Aligned_cols=175 Identities=15% Similarity=0.019 Sum_probs=142.9
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------CC
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PD 150 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------~~ 150 (313)
|+++|+++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+
T Consensus 1 l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (198)
T TIGR01189 1 LAARNLACSRGERM----LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR---PDSGEVRWNGTALAEQRDEPHR 73 (198)
T ss_pred CEEEEEEEEECCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccchHHhhh
Confidence 47899999998766 9999999999999999999999999999999999999 9999999999753 24
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCce
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar 228 (313)
.++|++|+...++ .+|+.+|+.+.....+ ....++.++++.++. ..+.++.+|||||+||++||++++.+++
T Consensus 74 ~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 147 (198)
T TIGR01189 74 NILYLGHLPGLKP--ELSALENLHFWAAIHG----GAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAP 147 (198)
T ss_pred heEEeccCccccc--CCcHHHHHHHHHHHcC----CcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 5899999854333 4799999987654332 123457788888774 3466778999999999999999999999
Q ss_pred EEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHH
Q 021362 229 VVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAM 265 (313)
Q Consensus 229 ~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~ 265 (313)
++++|+|+..||. .+++.|.++.++ .+++||+...+.
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~ 191 (198)
T TIGR01189 148 LWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV 191 (198)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc
Confidence 9999999999998 455555555322 479999986543
No 222
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=7e-33 Score=277.18 Aligned_cols=195 Identities=15% Similarity=0.021 Sum_probs=154.5
Q ss_pred ccEEEEccceEEcc-ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEE
Q 021362 75 IPVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 153 (313)
Q Consensus 75 m~~l~~~~l~~~y~-~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~ 153 (313)
++||+++||++.|+ +.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++ ...++
T Consensus 4 ~~~l~i~~l~~~y~~~~~----il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~---p~~G~i~~~~---~~~i~ 73 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKKQ----ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFEGEARPAP---GIKVG 73 (556)
T ss_pred cEEEEEeeEEEEeCCCCe----eeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecC---CCEEE
Confidence 35899999999998 555 9999999999999999999999999999999999999 9999999875 24699
Q ss_pred EEecCCCCCCcccCCcccChHHHHHh--------------cCCCCC----------------------ccHHHHHHHHHH
Q 021362 154 VLPMDGFHLYLSQLDAMEDPKEAHAR--------------RGAPWT----------------------FNPLLLLNCLKN 197 (313)
Q Consensus 154 ~v~qd~~~~~~~~ltv~e~~~~~~~~--------------~~~~~~----------------------~~~~~~~~~l~~ 197 (313)
|++|++..++ .+|+.||+.+.... ...... ....++.++++.
T Consensus 74 ~v~Q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 151 (556)
T PRK11819 74 YLPQEPQLDP--EKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDA 151 (556)
T ss_pred EEecCCCCCC--CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHh
Confidence 9999965433 58999999875321 011100 113456677777
Q ss_pred hhc-CCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChh----hHHHHHhhccceEEEEcChHHHHH---HHh
Q 021362 198 LRN-QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDEKWFIEVDLDTAMQ---RVL 269 (313)
Q Consensus 198 l~~-~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~----~~~~l~~l~~~~i~vtHd~~~~~~---rv~ 269 (313)
++. ..++++.+|||||||||+||++++.++++|++|+|+..||+. +.+.|+++....|+||||++++.. +++
T Consensus 152 ~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~ 231 (556)
T PRK11819 152 LRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWIL 231 (556)
T ss_pred CCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEE
Confidence 774 346677799999999999999999999999999999999994 444445444345799999999987 555
Q ss_pred ----hccc-ccCCchHH
Q 021362 270 ----KRHI-STGKPPDV 281 (313)
Q Consensus 270 ----griv-~~G~~~ev 281 (313)
|+++ ..|..+++
T Consensus 232 ~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 232 ELDRGRGIPWEGNYSSW 248 (556)
T ss_pred EEeCCEEEEecCCHHHH
Confidence 7876 56776654
No 223
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-33 Score=279.35 Aligned_cols=194 Identities=13% Similarity=0.098 Sum_probs=155.9
Q ss_pred EccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---------CC
Q 021362 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---------PD 150 (313)
Q Consensus 80 ~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~---------~~ 150 (313)
++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+. ..
T Consensus 1 ~~nl~~~~~~~~----il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~~ 73 (491)
T PRK10982 1 MSNISKSFPGVK----ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ---KDSGSILFQGKEIDFKSSKEALEN 73 (491)
T ss_pred CCceEEEeCCEE----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCEECCCCCHHHHHhC
Confidence 478999998766 9999999999999999999999999999999999999 9999999999653 23
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHH-hcCC--CCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhcc
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGA--PWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~-~~~~--~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~ 225 (313)
.++|++|++..++ .+|+.+|+.+... ..+. ......+++.++++.++. ..++++.+|||||||||+||++++.
T Consensus 74 ~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 74 GISMVHQELNLVL--QRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred CEEEEeccccccc--CCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHh
Confidence 5899999965433 4899999987532 1121 111223467788888874 3466778999999999999999999
Q ss_pred CceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 226 ~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
++++|++|+|+..||. .+++.|+++.+. .|++|||++++.. |++ |++++.|+++++.
T Consensus 152 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 9999999999999999 455555555432 4799999999876 555 8999988877753
No 224
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.1e-33 Score=277.09 Aligned_cols=193 Identities=10% Similarity=-0.023 Sum_probs=154.3
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~----- 149 (313)
|.||+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 1 m~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~---p~~G~i~~~~~~~~~~~~~ 73 (490)
T PRK10938 1 MSSLQISQGTFRLSDTK----TLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP---LLSGERQSQFSHITRLSFE 73 (490)
T ss_pred CceEEEEeEEEEcCCee----ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCceEEECCcccccCCHH
Confidence 34799999999998766 9999999999999999999999999999999999999 99999999875431
Q ss_pred ---CeEEEEecCCCCC-Cc-----ccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcch
Q 021362 150 ---DVATVLPMDGFHL-YL-----SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 150 ---~~i~~v~qd~~~~-~~-----~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ 218 (313)
+.++|++|++... .. ..+++.+++.+. ....+++.++++.++. ..++++.+||||||||++
T Consensus 74 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 145 (490)
T PRK10938 74 QLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE--------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTL 145 (490)
T ss_pred HHHHHhceeccCcchhhcccchhhccccHHHhcccc--------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHH
Confidence 2388999974321 10 124666654321 1234567888998884 346778899999999999
Q ss_pred hhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 219 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 219 ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
||++++.++++|++|+|+..||. .+++.|.++.++ .|++|||++.+.. |++ |+++..|+++++.
T Consensus 146 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 146 LCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999 455666555432 4799999999876 554 8999889887764
No 225
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-33 Score=261.11 Aligned_cols=203 Identities=12% Similarity=0.085 Sum_probs=158.3
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc--CCCCceeecCCCCC-----
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~--~p~~G~i~~~g~~~----- 148 (313)
.+|+++|+++.|.+. ...+|+|+||+|++||++||+||||||||||+++|+|+.... .|++|+|.++|++.
T Consensus 79 ~~i~~~nls~~y~~~--~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 79 NVFEIRNFNFWYMNR--TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred ceEEEEeeEEEecCC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 379999999999631 122899999999999999999999999999999999998510 04799999999764
Q ss_pred -----CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCc-cHHHHHHHHHHhhc------CCCccCCCCCCcCCCc
Q 021362 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF-NPLLLLNCLKNLRN------QGSVYAPSFDHGVGDP 216 (313)
Q Consensus 149 -----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~------~~~~~~~~LSgG~kqR 216 (313)
...++|+||++..+ . .|+++|+.+.....+..... ..+.+.++++.++. ..+.+...||||||||
T Consensus 157 ~~~~lr~~i~~v~q~~~~~-~--~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqR 233 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPF-E--MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQR 233 (329)
T ss_pred chHhhhccEEEEecCCccC-C--CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHH
Confidence 24599999997644 2 69999998764332222111 12234566666653 2345677999999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++||+|++.++++|++|+++..||. .+.+.|+++.+. .++|||+++++.. |++ |++++.|.+.++..
T Consensus 234 l~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~ 313 (329)
T PRK14257 234 LCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFI 313 (329)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999 455555555433 4799999999876 666 99999999999864
No 226
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=2.6e-33 Score=250.46 Aligned_cols=185 Identities=16% Similarity=0.129 Sum_probs=148.3
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC----CCceeecCCCCC------CCeEEEEecCCCCCCcc
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKASSFDSQVKP------PDVATVLPMDGFHLYLS 165 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p----~~G~i~~~g~~~------~~~i~~v~qd~~~~~~~ 165 (313)
+|+|+||+|++|++++|+||||||||||+++|+|+++ | ++|+|.++|.+. .+.++|++|++...+.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP---PGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CccCccccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 5789999999999999999999999999999999998 8 899999999763 24699999996422333
Q ss_pred cCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC-----CCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccC
Q 021362 166 QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240 (313)
Q Consensus 166 ~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllD 240 (313)
.+|+.+|+.+.....+.......+++.++++.++.. .+..+.+||||||||++||++++.++++|++|+|+..||
T Consensus 78 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD 157 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLD 157 (230)
T ss_pred ccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 578999987655443332223345678888888754 356777999999999999999999999999999999999
Q ss_pred h----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 241 G----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 241 E----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
. .+++.|.++.+ ..+++|||++++.. |++ |++++.|+++++..
T Consensus 158 ~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 215 (230)
T TIGR02770 158 VVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFY 215 (230)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9 45566666543 24699999999875 554 89999998887753
No 227
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.9e-33 Score=249.56 Aligned_cols=183 Identities=17% Similarity=0.076 Sum_probs=146.0
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
+|+++|+++.|+...+...+|+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (220)
T TIGR02982 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS---VQEGSLKVLGQELYGASEKEL 77 (220)
T ss_pred CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEhHhcCHhHH
Confidence 37899999999752112339999999999999999999999999999999999999 9999999998753
Q ss_pred ---CCeEEEEecCCCCCCcccCCcccChHHHHHhcC-CCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhh
Q 021362 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ---~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~a 222 (313)
...++|++|++..+. .+|+.+|+.+...... .......+++.++++.++.. .+..+.+||+||+||++||++
T Consensus 78 ~~~~~~i~~~~q~~~~~~--~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~lara 155 (220)
T TIGR02982 78 VQLRRNIGYIFQAHNLLG--FLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARA 155 (220)
T ss_pred HHHHhheEEEcCChhhcC--CCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHH
Confidence 245999999965443 4799999988654332 22222344678888888843 455677999999999999999
Q ss_pred hccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTA 264 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~ 264 (313)
++.++++|++|+|+..||. .+++.|+++.+ ..+++|||++..
T Consensus 156 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~ 205 (220)
T TIGR02982 156 LVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL 205 (220)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 9999999999999999999 44566665543 247999999854
No 228
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=3.6e-33 Score=244.64 Aligned_cols=174 Identities=16% Similarity=0.039 Sum_probs=142.1
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------CC
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PD 150 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------~~ 150 (313)
|+++|+++.|++.. +|+++||+|++|+++||+|+||||||||+++|+|+++ |++|+|.++|.+. .+
T Consensus 1 l~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (201)
T cd03231 1 LEADELTCERDGRA----LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP---PLAGRVLLNGGPLDFQRDSIAR 73 (201)
T ss_pred CEEEEEEEEeCCce----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccccHHhhh
Confidence 47899999998766 9999999999999999999999999999999999999 9999999998653 23
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCce
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar 228 (313)
.++|++|++..++ .+|+.||+.+.... ...+++.++++.++.. .+.++.+|||||+||+++|++++.+++
T Consensus 74 ~i~~~~q~~~~~~--~~tv~e~l~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 145 (201)
T cd03231 74 GLLYLGHAPGIKT--TLSVLENLRFWHAD------HSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRP 145 (201)
T ss_pred heEEeccccccCC--CcCHHHHHHhhccc------ccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 5899999854333 47999998775311 1345678888888743 456777999999999999999999999
Q ss_pred EEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH
Q 021362 229 VVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 229 ~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
++++|+|+..||. .+.+.|.++.+. .+++|||......
T Consensus 146 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~ 190 (201)
T cd03231 146 LWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSE 190 (201)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhh
Confidence 9999999999999 445555444322 4699998876654
No 229
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=3e-33 Score=283.14 Aligned_cols=194 Identities=14% Similarity=0.112 Sum_probs=159.8
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
-|+++|+++.|+... ..+|+|+||+|++||++||+|+||||||||+|+|.|++. |++|+|.+||.+.
T Consensus 471 ~I~~~nvsf~y~~~~--~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~---p~~G~I~~dg~dl~~i~~~~l 545 (709)
T COG2274 471 EIEFENVSFRYGPDD--PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK---PQQGRILLDGVDLNDIDLASL 545 (709)
T ss_pred eEEEEEEEEEeCCCC--cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEeHHhcCHHHH
Confidence 499999999998752 249999999999999999999999999999999999999 9999999999873
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCc----cCCCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~LSgG~kq 215 (313)
++.++||+||++.+. -|++||+.+. .|... .+.+.++++.-+ .+-+. ....|||||||
T Consensus 546 R~~ig~V~Q~~~Lf~---gSI~eNi~l~-----~p~~~-~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQ 616 (709)
T COG2274 546 RRQVGYVLQDPFLFS---GSIRENIALG-----NPEAT-DEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQ 616 (709)
T ss_pred HhheeEEcccchhhc---CcHHHHHhcC-----CCCCC-HHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHH
Confidence 457999999977655 4999999764 23322 344444444433 12222 33489999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhc--cceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMF--DEKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~--~~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||||+.+++++|++||++.-||+ .+.+.|.++. ...|+|+|.+..+.. |++ |+++++|+.+|+..
T Consensus 617 rlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 617 RLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred HHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHH
Confidence 99999999999999999999999999 5666666776 446899999999998 666 99999999999977
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 697 ~ 697 (709)
T COG2274 697 Q 697 (709)
T ss_pred h
Confidence 5
No 230
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.7e-33 Score=251.38 Aligned_cols=197 Identities=12% Similarity=0.074 Sum_probs=157.9
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCceeecCCCCC--
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP-- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-----~~G~i~~~g~~~-- 148 (313)
+.+.++++++.|++.. +|+++||+|++|++++|+|+||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 7 ~~~~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~~G~i~~~g~~i~~ 79 (261)
T PRK14263 7 IVMDCKLDKIFYGNFM----AVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMND---LVKGFRFEGHVHFLGQDVYG 79 (261)
T ss_pred ceEEEEeEEEEeCCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccc---cccCCCCceEEEECCEeccc
Confidence 4689999999998766 9999999999999999999999999999999999997 6 799999999653
Q ss_pred --------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC------CCccCCCCCCcCC
Q 021362 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (313)
Q Consensus 149 --------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~------~~~~~~~LSgG~k 214 (313)
.+.++|++|++..+ . +|+.||+.+.....+.. ....+++.++++.++.. .+.++.+||+||+
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~ 155 (261)
T PRK14263 80 KGVDPVVVRRYIGMVFQQPNPF-S--MSIFDNVAFGLRLNRYK-GDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQ 155 (261)
T ss_pred cccchHhhhhceEEEecCCccc-c--ccHHHHHHHHHhhcCch-HHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHH
Confidence 23489999996543 2 79999998875443321 22345677788877642 2345669999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HH--h----------hccc
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RV--L----------KRHI 273 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv--~----------griv 273 (313)
||++||+|++.++++|++|+|+..||. .+++.|+++.+. .+++|||++++.. |+ + |+++
T Consensus 156 qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~ 235 (261)
T PRK14263 156 QRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLV 235 (261)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEE
Confidence 999999999999999999999999999 556666665432 4699999998876 32 2 6788
Q ss_pred ccCCchHHHH
Q 021362 274 STGKPPDVAK 283 (313)
Q Consensus 274 ~~G~~~ev~~ 283 (313)
+.|+++++..
T Consensus 236 ~~g~~~~~~~ 245 (261)
T PRK14263 236 EMGPTAQIFQ 245 (261)
T ss_pred EeCCHHHHHh
Confidence 8888887754
No 231
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=1.1e-32 Score=256.27 Aligned_cols=201 Identities=13% Similarity=0.104 Sum_probs=157.1
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc--CCCCceeecCCCCC-----
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~--~p~~G~i~~~g~~~----- 148 (313)
++|+++|+++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++.. +|++|+|.++|.+.
T Consensus 44 ~~l~i~nl~~~~~~~~----iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~ 119 (305)
T PRK14264 44 AKLSVEDLDVYYGDDH----ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV 119 (305)
T ss_pred ceEEEEEEEEEeCCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 3799999999998766 999999999999999999999999999999999998510 15899999998643
Q ss_pred -----CCeEEEEecCCCCCCcccCCcccChHHHHHhcC------------CCC-CccHHHHHHHHHHhhc------CCCc
Q 021362 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG------------APW-TFNPLLLLNCLKNLRN------QGSV 204 (313)
Q Consensus 149 -----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~------------~~~-~~~~~~~~~~l~~l~~------~~~~ 204 (313)
.+.++|++|+... +. .|++||+.+.....+ ... ....+++.++++.++. ..+.
T Consensus 120 ~~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 196 (305)
T PRK14264 120 NLVELRKRVGMVFQSPNP-FP--KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDD 196 (305)
T ss_pred cHHHHhhceEEEccCCcc-cc--ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcC
Confidence 1358999999643 33 599999987643221 111 1123456677777753 2355
Q ss_pred cCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HH-h----h
Q 021362 205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RV-L----K 270 (313)
Q Consensus 205 ~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv-~----g 270 (313)
++.+|||||+||++||++++.++++|++|+|+..||. .+++.|+++.+. .|++|||++++.. |+ + |
T Consensus 197 ~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G 276 (305)
T PRK14264 197 NALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGG 276 (305)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCC
Confidence 6779999999999999999999999999999999999 455555555443 4799999999876 53 2 8
Q ss_pred cccccCCchHHHH
Q 021362 271 RHISTGKPPDVAK 283 (313)
Q Consensus 271 riv~~G~~~ev~~ 283 (313)
++++.|+++++..
T Consensus 277 ~i~~~g~~~~~~~ 289 (305)
T PRK14264 277 ELVEYDDTDKIFE 289 (305)
T ss_pred EEEEeCCHHHHHh
Confidence 9999998887743
No 232
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=1.6e-33 Score=252.16 Aligned_cols=197 Identities=15% Similarity=0.110 Sum_probs=148.4
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------C
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------P 149 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--------~ 149 (313)
|+++|+++.|++.. ..+|+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 1 i~~~~l~~~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~ 75 (234)
T cd03251 1 VEFKNVTFRYPGDG--PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD---VDSGRILIDGHDVRDYTLASLR 75 (234)
T ss_pred CEEEEEEEEeCCCC--ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCCCEEEECCEEhhhCCHHHHH
Confidence 46899999997641 128999999999999999999999999999999999999 9999999999653 2
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHH-----HHHHHHHHh--h--cCCCccCCCCCCcCCCcchhh
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPL-----LLLNCLKNL--R--NQGSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~-----~~~~~l~~l--~--~~~~~~~~~LSgG~kqRv~ia 220 (313)
+.++|++|++..+ . .|+.||+.+..... ....... .+.++++.+ + ...+.++.+||+||+||++||
T Consensus 76 ~~i~~~~q~~~~~-~--~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 150 (234)
T cd03251 76 RQIGLVSQDVFLF-N--DTVAENIAYGRPGA--TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIA 150 (234)
T ss_pred hhEEEeCCCCeec-c--ccHHHHhhccCCCC--CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHH
Confidence 3589999996543 2 59999987643211 1000000 122333333 1 123456679999999999999
Q ss_pred hhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHHHH
Q 021362 221 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 221 ~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~~ 284 (313)
++++.+++++++|+|+..||. .+.+.|+++.+. .|++|||++++.. |++ |++++.|+++++...
T Consensus 151 ~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 151 RALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ 226 (234)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc
Confidence 999999999999999999999 455555555432 4699999999866 544 888888887776443
No 233
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=1.1e-32 Score=274.33 Aligned_cols=194 Identities=13% Similarity=0.074 Sum_probs=157.3
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
++|+++|+++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|. ..++|+
T Consensus 318 ~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~---~~i~~~ 387 (530)
T PRK15064 318 NALEVENLTKGFDNGP----LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE---PDSGTVKWSEN---ANIGYY 387 (530)
T ss_pred ceEEEEeeEEeeCCce----eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCc---eEEEEE
Confidence 4799999999998766 9999999999999999999999999999999999999 99999999874 469999
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---CCCccCCCCCCcCCCcchhhhhhccCceEEEE
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~ 232 (313)
+|+....+...+|+.+|+.+.. . .....+++.++++.++. ..++++.+||||||||++||++++.++++|++
T Consensus 388 ~q~~~~~~~~~~t~~~~~~~~~---~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllL 462 (530)
T PRK15064 388 AQDHAYDFENDLTLFDWMSQWR---Q--EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVM 462 (530)
T ss_pred cccccccCCCCCcHHHHHHHhc---c--CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9986422333578988875421 1 12234567888998875 24677889999999999999999999999999
Q ss_pred cCCccccCh----hhHHHHHhhccceEEEEcChHHHHH---HHh----hccc-ccCCchHHHHH
Q 021362 233 DGNYLFLDG----GVWKDVSSMFDEKWFIEVDLDTAMQ---RVL----KRHI-STGKPPDVAKW 284 (313)
Q Consensus 233 d~~~lllDE----~~~~~l~~l~~~~i~vtHd~~~~~~---rv~----griv-~~G~~~ev~~~ 284 (313)
|+|+..||. .+++.|+++....|+||||++++.. |++ |+++ ..|++.++...
T Consensus 463 DEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 463 DEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 999999999 4455555543335799999999887 554 7887 67888776543
No 234
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.98 E-value=6.2e-33 Score=303.26 Aligned_cols=199 Identities=17% Similarity=0.190 Sum_probs=169.1
Q ss_pred cEEEEccceEEcc--ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-----
Q 021362 76 PVVEARCMDEVYD--ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~--~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~----- 148 (313)
+.|+++||+|.|+ ++. +|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 927 ~~L~I~nLsK~y~~~~k~----aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~---PtsG~I~i~G~dI~~~~~ 999 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRP----AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP---PTSGTVLVGGKDIETNLD 999 (2272)
T ss_pred ceEEEEeEEEEecCCCce----EEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC---CCceEEEECCEECcchHH
Confidence 4799999999995 334 9999999999999999999999999999999999999 9999999999764
Q ss_pred --CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhc
Q 021362 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 --~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
++.+||++|++..+. .+|+.||+.+....++.+.....+++.++++.++. ..++++.+||||||||++||+|++
T Consensus 1000 ~~r~~IG~~pQ~~~L~~--~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi 1077 (2272)
T TIGR01257 1000 AVRQSLGMCPQHNILFH--HLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFV 1077 (2272)
T ss_pred HHhhcEEEEecCCcCCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 245899999965443 58999999998776665544445678889999884 346678899999999999999999
Q ss_pred cCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
.++++|++|+|+..||+ .+|+.|+++.+. ++++|||++++.. |++ |+++..|++.++.+
T Consensus 1078 ~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257 1078 GDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999 677777777432 4799999999986 655 99999999887754
No 235
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=1.4e-32 Score=273.64 Aligned_cols=194 Identities=12% Similarity=0.051 Sum_probs=154.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEe
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~ 156 (313)
||+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|. ..++|++
T Consensus 1 ml~i~~ls~~~~~~~----il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~~---~~i~~~~ 70 (530)
T PRK15064 1 MLSTANITMQFGAKP----LFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE---PSAGNVSLDPN---ERLGKLR 70 (530)
T ss_pred CEEEEEEEEEeCCcE----eEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---CEEEEEe
Confidence 489999999998766 9999999999999999999999999999999999999 99999999873 4589999
Q ss_pred cCCCCCCcccCCcccChHHHHHh-----------cCCCC---------------------CccHHHHHHHHHHhhcCC--
Q 021362 157 MDGFHLYLSQLDAMEDPKEAHAR-----------RGAPW---------------------TFNPLLLLNCLKNLRNQG-- 202 (313)
Q Consensus 157 qd~~~~~~~~ltv~e~~~~~~~~-----------~~~~~---------------------~~~~~~~~~~l~~l~~~~-- 202 (313)
|++..+. .+|+.||+.++... .+.+. .....++.++++.++...
T Consensus 71 q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 148 (530)
T PRK15064 71 QDQFAFE--EFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQ 148 (530)
T ss_pred ccCCcCC--CCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhH
Confidence 9865333 48999998764210 01110 012345677888888532
Q ss_pred -CccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhcc----ceEEEEcChHHHHH---HHh----h
Q 021362 203 -SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----K 270 (313)
Q Consensus 203 -~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----g 270 (313)
+.++.+|||||||||+||++++.++++|++|+|+..||....+.+.++.. .+|+||||++++.. |++ |
T Consensus 149 ~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g 228 (530)
T PRK15064 149 HYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYG 228 (530)
T ss_pred hcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCC
Confidence 34677999999999999999999999999999999999955544444432 24799999999876 555 8
Q ss_pred ccc-ccCCchHHH
Q 021362 271 RHI-STGKPPDVA 282 (313)
Q Consensus 271 riv-~~G~~~ev~ 282 (313)
+++ ..|.++++.
T Consensus 229 ~i~~~~g~~~~~~ 241 (530)
T PRK15064 229 ELRVYPGNYDEYM 241 (530)
T ss_pred EEEEecCCHHHHH
Confidence 884 688887664
No 236
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.98 E-value=1.1e-32 Score=249.49 Aligned_cols=195 Identities=16% Similarity=0.085 Sum_probs=151.1
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHH--hcccCCCCceeecCCCCCC----
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKASSFDSQVKPP---- 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl--~~~~~p~~G~i~~~g~~~~---- 149 (313)
++|+++|+++.|++.. +|+++||+|++||+++|+|+||||||||+++|+|+ ++ |++|+|.++|.+..
T Consensus 6 ~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~---~~~G~i~~~g~~~~~~~~ 78 (252)
T CHL00131 6 PILEIKNLHASVNENE----ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYK---ILEGDILFKGESILDLEP 78 (252)
T ss_pred ceEEEEeEEEEeCCEE----eeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCc---CCCceEEECCEEcccCCh
Confidence 3799999999998655 99999999999999999999999999999999998 46 99999999986531
Q ss_pred ----C-eEEEEecCCCCCCcccCCcccChHHHHHhc----CCCCC---ccHHHHHHHHHHhhcC---CCccCC-CCCCcC
Q 021362 150 ----D-VATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWT---FNPLLLLNCLKNLRNQ---GSVYAP-SFDHGV 213 (313)
Q Consensus 150 ----~-~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~----~~~~~---~~~~~~~~~l~~l~~~---~~~~~~-~LSgG~ 213 (313)
+ .++|++|++..+. .+++.+++.+..... +.... ...+++.++++.++.. .+..+. .|||||
T Consensus 79 ~~~~~~~~~~~~q~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~ 156 (252)
T CHL00131 79 EERAHLGIFLAFQYPIEIP--GVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGE 156 (252)
T ss_pred hhhheeeEEEEeccccccc--cccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHH
Confidence 1 3678999865433 468888877643221 11110 1124566778887743 345565 599999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH----HHh----hcccccCCc
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ----RVL----KRHISTGKP 278 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~----rv~----griv~~G~~ 278 (313)
+||++||++++.++++|++|+|+..||. .+++.|+++.+ ..|++|||++++.. |++ |++++.|++
T Consensus 157 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~ 236 (252)
T CHL00131 157 KKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDA 236 (252)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecCh
Confidence 9999999999999999999999999999 45566665543 24799999998763 443 889888887
Q ss_pred h
Q 021362 279 P 279 (313)
Q Consensus 279 ~ 279 (313)
+
T Consensus 237 ~ 237 (252)
T CHL00131 237 E 237 (252)
T ss_pred h
Confidence 6
No 237
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.98 E-value=1.4e-32 Score=241.16 Aligned_cols=202 Identities=14% Similarity=0.134 Sum_probs=161.6
Q ss_pred cEEEEccceEEcccc--------------------ccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccC
Q 021362 76 PVVEARCMDEVYDAL--------------------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIW 135 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~--------------------~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~ 135 (313)
++|+++||+|.|.-. .....+|+||||++++||.+||+|+||||||||+|+|+|.++
T Consensus 2 ~~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~--- 78 (249)
T COG1134 2 VVIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK--- 78 (249)
T ss_pred cEEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC---
Confidence 457777777766321 234569999999999999999999999999999999999999
Q ss_pred CCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHH--HhhcCCCccCCCCCCcC
Q 021362 136 PQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK--NLRNQGSVYAPSFDHGV 213 (313)
Q Consensus 136 p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~--~l~~~~~~~~~~LSgG~ 213 (313)
|++|+|.++|+ ++.+..-+.- +++++|.+||+.+.....|+...+..+++.++.+ .||...+.++..||-||
T Consensus 79 Pt~G~v~v~G~-----v~~li~lg~G-f~pelTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM 152 (249)
T COG1134 79 PTSGKVKVTGK-----VAPLIELGAG-FDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGM 152 (249)
T ss_pred CCCceEEEcce-----EehhhhcccC-CCcccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHH
Confidence 99999999885 2222222112 2346999999999988889888777788877766 45577888999999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH---HHh----hcccccCCch
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rv~----griv~~G~~~ 279 (313)
+-|++++.++..++.+|++|+-+..-|+ +..+.+.++.. ..++||||++.+.+ |++ |++...|.++
T Consensus 153 ~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~ 232 (249)
T COG1134 153 YARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPE 232 (249)
T ss_pred HHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHH
Confidence 9999999988888888888888888888 34444555522 24799999999998 666 9999999999
Q ss_pred HHHHHHH
Q 021362 280 DVAKWRI 286 (313)
Q Consensus 280 ev~~~~~ 286 (313)
+++..+.
T Consensus 233 ~vi~~Y~ 239 (249)
T COG1134 233 EVIPAYE 239 (249)
T ss_pred HHHHHHH
Confidence 9988753
No 238
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.98 E-value=2.3e-32 Score=253.19 Aligned_cols=210 Identities=15% Similarity=0.145 Sum_probs=175.2
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcc--cCCCCceeecCCCC-----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVK----- 147 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~--~~p~~G~i~~~g~~----- 147 (313)
+++|+++||++.|+...+...++++|||+|++||.++|+|.||||||-..+.|+++++. ...-+|+|.++|.+
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 56899999999998655556699999999999999999999999999999999999952 11237899999977
Q ss_pred -------CCCeEEEEecCCCCCCcccCCcccChHHHHHh-cCCCCCccHHHHHHHHHHhhcC-----CCccCCCCCCcCC
Q 021362 148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVG 214 (313)
Q Consensus 148 -------~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~LSgG~k 214 (313)
+..+|+++||++....++-.|+...+....+. +|...+..++++.++|+.+|.. .+.++.+||||||
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqR 163 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQR 163 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchh
Confidence 23469999999987777777888877776654 5677777888999999999932 3557779999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCch
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ 279 (313)
|||.||+|++..+++||.|+|+.-||- ++++.|+++..+ .+|||||+..+.+ ||. |++++.|..+
T Consensus 164 QRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~ 243 (534)
T COG4172 164 QRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTE 243 (534)
T ss_pred hHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHH
Confidence 999999999999999999999999999 555555555443 3699999999988 666 9999999998
Q ss_pred HHHHH
Q 021362 280 DVAKW 284 (313)
Q Consensus 280 ev~~~ 284 (313)
++...
T Consensus 244 ~lF~~ 248 (534)
T COG4172 244 TLFAA 248 (534)
T ss_pred HHhhC
Confidence 88653
No 239
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.98 E-value=5.5e-33 Score=248.40 Aligned_cols=180 Identities=17% Similarity=0.180 Sum_probs=142.0
Q ss_pred ccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC---CeEEEEecCCCCCCcccCCcccCh
Q 021362 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---DVATVLPMDGFHLYLSQLDAMEDP 173 (313)
Q Consensus 97 L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~---~~i~~v~qd~~~~~~~~ltv~e~~ 173 (313)
|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.. ...+|++|++..+. .+|+.||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~--~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ---PTSGGVILEGKQITEPGPDRMVVFQNYSLLP--WLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChhheEEecCcccCC--CCCHHHHH
Confidence 579999999999999999999999999999999999 99999999996542 23589999965443 47999999
Q ss_pred HHHHHh--cCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHH
Q 021362 174 KEAHAR--RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWK 245 (313)
Q Consensus 174 ~~~~~~--~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~ 245 (313)
.+.... .+.......+++.++++.++.. .+.++.+||||||||++||++++.++++|++|+|+..||. .+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~ 155 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQE 155 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHH
Confidence 876421 1222222344567888888743 4567779999999999999999999999999999999999 5555
Q ss_pred HHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHH
Q 021362 246 DVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 246 ~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev 281 (313)
.|.++.++ .+++|||++++.. |++ |++++.|...++
T Consensus 156 ~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 156 ELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 56555432 4799999998876 554 888888765544
No 240
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.98 E-value=6.3e-33 Score=246.02 Aligned_cols=173 Identities=12% Similarity=0.070 Sum_probs=135.8
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------C
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------P 149 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--------~ 149 (313)
|+++|+++.|++.. ..+|+|+||+|++|++++|+||||||||||+++|+|+.+ |++|+|.++|.+. .
T Consensus 3 l~~~~l~~~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 77 (220)
T cd03245 3 IEFRNVSFSYPNQE--IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK---PTSGSVLLDGTDIRQLDPADLR 77 (220)
T ss_pred EEEEEEEEEcCCCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCeEEECCEEhHHCCHHHHH
Confidence 78999999997521 128999999999999999999999999999999999999 9999999999653 2
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCc-----------cCCCCCCcCCCc
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSV-----------YAPSFDHGVGDP 216 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~-----------~~~~LSgG~kqR 216 (313)
+.++|++|++..+ . .|+.||+.+... ......+.++++.++.. .+. .+.+|||||+||
T Consensus 78 ~~i~~~~q~~~~~-~--~tv~e~l~~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qr 148 (220)
T cd03245 78 RNIGYVPQDVTLF-Y--GTLRDNITLGAP------LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQA 148 (220)
T ss_pred hhEEEeCCCCccc-c--chHHHHhhcCCC------CCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHH
Confidence 3589999996533 2 589998865321 11234455566655421 111 345999999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHH
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTA 264 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~ 264 (313)
++||++++.++++|++|+|+..||. .+++.|+++..+ .|++|||+++.
T Consensus 149 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~ 202 (220)
T cd03245 149 VALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL 202 (220)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence 9999999999999999999999999 455666665442 46999999976
No 241
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=9.1e-33 Score=246.43 Aligned_cols=190 Identities=17% Similarity=0.216 Sum_probs=145.9
Q ss_pred EEEccceEEccc-cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 78 l~~~~l~~~y~~-~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
|+++|+++.|++ .. +|+|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 l~~~~l~~~~~~~~~----~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 75 (229)
T cd03254 3 IEFENVNFSYDEKKP----VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD---PQKGQILIDGIDIRDISRKSL 75 (229)
T ss_pred EEEEEEEEecCCCCc----cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEeHHHcCHHHH
Confidence 789999999974 34 9999999999999999999999999999999999999 9999999998653
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh-------------cCCCccCCCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR-------------NQGSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------------~~~~~~~~~LSgG~kq 215 (313)
...++|++|++.. +. .|+.+|+.+.... .....+.+.++.++ ...+..+.+||+||+|
T Consensus 76 ~~~i~~~~q~~~~-~~--~tv~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~ 146 (229)
T cd03254 76 RSMIGVVLQDTFL-FS--GTIMENIRLGRPN------ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQ 146 (229)
T ss_pred hhhEEEecCCchh-hh--hHHHHHHhccCCC------CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHH
Confidence 2458999999643 32 4888888654211 11223333333222 1123456799999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||++++.++++|++|+|+..||. .+++.|.++.+ ..+++|||++++.. +++ |+++..|+.+++..
T Consensus 147 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 147 LLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999999999998 45555555542 24699999999865 444 78887777666543
No 242
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.98 E-value=4e-33 Score=248.43 Aligned_cols=176 Identities=13% Similarity=0.078 Sum_probs=139.9
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEec
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~q 157 (313)
+.++++++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|+++|.+.. +. +
T Consensus 23 l~~~~~~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~----~~-~ 90 (224)
T cd03220 23 LGILGRKGEVGEFW----ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP---PDSGTVTVRGRVSS----LL-G 90 (224)
T ss_pred hhhhhhhhhcCCeE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEch----hh-c
Confidence 78899999999877 9999999999999999999999999999999999999 99999999986532 11 1
Q ss_pred CCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEEEEcCC
Q 021362 158 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 235 (313)
Q Consensus 158 d~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~ 235 (313)
....+. +.+|+.||+.+....++.......+++.++++.++. ..+..+.+||||||||++||++++.++++|++|+|
T Consensus 91 ~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP 169 (224)
T cd03220 91 LGGGFN-PELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEV 169 (224)
T ss_pred ccccCC-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 111222 248999999887554433222233456677777763 34567789999999999999999999999999999
Q ss_pred ccccCh----hhHHHHHhhccc---eEEEEcChHHHHH
Q 021362 236 YLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 236 ~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
+..||. .+++.|.++..+ .|++|||++++..
T Consensus 170 ~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~ 207 (224)
T cd03220 170 LAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKR 207 (224)
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 999999 456666665433 4799999998875
No 243
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=1.2e-32 Score=244.60 Aligned_cols=186 Identities=14% Similarity=0.115 Sum_probs=156.3
Q ss_pred cceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC------------CC
Q 021362 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------------PP 149 (313)
Q Consensus 82 ~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~------------~~ 149 (313)
|+.+.+|+.. -+++|+.+...+++|-|+||||||||+|+|+|+.+ |+.|.|.++|.- -.
T Consensus 5 ~~~~~lG~~~------l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r---PdeG~I~lngr~L~Ds~k~i~lp~~~ 75 (352)
T COG4148 5 NFRQRLGNFA------LDANFTLPARGITALFGPSGSGKTSLINMIAGLTR---PDEGRIELNGRVLVDAEKGIFLPPEK 75 (352)
T ss_pred ehhhhcCceE------EEEeccCCCCceEEEecCCCCChhhHHHHHhccCC---ccccEEEECCEEeecccCCcccChhh
Confidence 4566666643 36899998878999999999999999999999999 999999999953 23
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccCc
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~a 227 (313)
+++||||||...|+ ++||+.|+.|+.... ....+.++.+.+| ...++++..|||||||||+|++|+...+
T Consensus 76 RriGYVFQDARLFp--H~tVrgNL~YG~~~~------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P 147 (352)
T COG4148 76 RRIGYVFQDARLFP--HYTVRGNLRYGMWKS------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAP 147 (352)
T ss_pred heeeeEeecccccc--ceEEecchhhhhccc------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCC
Confidence 56999999966554 599999998875432 4456777778887 4567888899999999999999999999
Q ss_pred eEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 228 KVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 228 r~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
++|++|+|+.-||+ +++..|+.+.++ +++|||.++++.+ +++ |++.+.|+.+++...
T Consensus 148 ~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 148 ELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred CeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence 99999999999999 788888888776 3699999999998 666 999999999998554
No 244
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=4.4e-32 Score=271.26 Aligned_cols=194 Identities=15% Similarity=0.028 Sum_probs=151.6
Q ss_pred EEEEccceEEcc-ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 77 ~l~~~~l~~~y~-~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
||+++||++.|+ +.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++ ...++|+
T Consensus 4 ~i~~~nls~~~~~~~~----il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~---p~~G~i~~~~---~~~i~~v 73 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKE----ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFNGEARPAP---GIKVGYL 73 (552)
T ss_pred EEEEeeEEEecCCCCe----eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecC---CCEEEEE
Confidence 799999999997 555 9999999999999999999999999999999999999 9999999875 2469999
Q ss_pred ecCCCCCCcccCCcccChHHHHHh--------------cCCCCCc----------------------cHHHHHHHHHHhh
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHAR--------------RGAPWTF----------------------NPLLLLNCLKNLR 199 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~--------------~~~~~~~----------------------~~~~~~~~l~~l~ 199 (313)
+|++..+. .+|+.||+.++... .+.+... ...++.++++.++
T Consensus 74 ~Q~~~~~~--~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 151 (552)
T TIGR03719 74 PQEPQLDP--TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALR 151 (552)
T ss_pred eccCCCCC--CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCC
Confidence 99965433 48999999874321 0111110 0123455666666
Q ss_pred c-CCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhH----HHHHhhccceEEEEcChHHHHH---HHh--
Q 021362 200 N-QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFDEKWFIEVDLDTAMQ---RVL-- 269 (313)
Q Consensus 200 ~-~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~----~~l~~l~~~~i~vtHd~~~~~~---rv~-- 269 (313)
. ..+.++.+||||||||++||++++.++++|++|+|+..||.... +.|.++....|+||||++.+.. +++
T Consensus 152 l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l 231 (552)
T TIGR03719 152 CPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILEL 231 (552)
T ss_pred CCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEE
Confidence 4 23567779999999999999999999999999999999999444 4444443345799999999886 555
Q ss_pred --hccc-ccCCchHHH
Q 021362 270 --KRHI-STGKPPDVA 282 (313)
Q Consensus 270 --griv-~~G~~~ev~ 282 (313)
|+++ ..|...++.
T Consensus 232 ~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 232 DRGRGIPWEGNYSSWL 247 (552)
T ss_pred ECCEEEEecCCHHHHH
Confidence 7765 568777643
No 245
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=1.9e-32 Score=238.87 Aligned_cols=175 Identities=11% Similarity=0.031 Sum_probs=139.5
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC----CeE
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----DVA 152 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~----~~i 152 (313)
||+++|+++.|++.. +++ +||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+.. ..+
T Consensus 1 ~l~~~~l~~~~~~~~----l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~ 72 (195)
T PRK13541 1 MLSLHQLQFNIEQKN----LFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ---PSSGNIYYKNCNINNIAKPYC 72 (195)
T ss_pred CeEEEEeeEEECCcE----EEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCcccChhhhhhE
Confidence 488999999997643 555 999999999999999999999999999999999 99999999997642 347
Q ss_pred EEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEE
Q 021362 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 153 ~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~L 230 (313)
+|++|+...++ .+|+.+|+.+....++ ..+.+.++++.++. ..++.+.+||+||+||+++|++++.+++++
T Consensus 73 ~~~~~~~~~~~--~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~l 145 (195)
T PRK13541 73 TYIGHNLGLKL--EMTVFENLKFWSEIYN-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLW 145 (195)
T ss_pred EeccCCcCCCc--cCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 89998854333 4899999987643322 23456777777763 346677799999999999999999999999
Q ss_pred EEcCCccccChh----hHHHHHhhccc---eEEEEcChHHHHH
Q 021362 231 IVDGNYLFLDGG----VWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 231 i~d~~~lllDE~----~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
++|+|+..||.. +++.|++..+. .+++|||++.+..
T Consensus 146 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~ 188 (195)
T PRK13541 146 LLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKS 188 (195)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccch
Confidence 999999999993 44444333222 4699999987654
No 246
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.2e-32 Score=271.44 Aligned_cols=195 Identities=16% Similarity=0.174 Sum_probs=156.2
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
.|+++||++.|..++ ...+|+|+||+|++||+++|+||||+||||++++|..++. |++|+|.+||++++
T Consensus 465 ~IeF~~VsFaYP~Rp-~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~---PtsG~IllDG~~i~~~~~~~l 540 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRP-DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD---PTSGRILLDGVPISDINHKYL 540 (716)
T ss_pred eEEEEEeeeecCCCC-CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCeehhhcCHHHH
Confidence 699999999998875 5569999999999999999999999999999999999999 99999999998843
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHH---------HhhcCCCc----cCCCCCCcCCC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQGSV----YAPSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~---------~l~~~~~~----~~~~LSgG~kq 215 (313)
+.||+|.|+|..+. -|++|||.|+.. ....+.+.++.+ .+-++-+. +-.+|||||||
T Consensus 541 r~~Ig~V~QEPvLFs---~sI~eNI~YG~~------~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQ 611 (716)
T KOG0058|consen 541 RRKIGLVGQEPVLFS---GSIRENIAYGLD------NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQ 611 (716)
T ss_pred HHHeeeeeccceeec---ccHHHHHhcCCC------CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHH
Confidence 46999999986554 599999987643 222333333322 22233333 33499999999
Q ss_pred cchhhhhhccCceEEEEcCCccccChh----hHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE~----~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|+||||||..++++||+|+.+.-||-+ +.+.|.++.++ +++|.|-+..+.. +|+ |++++.|+-+|+..
T Consensus 612 RIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 612 RIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred HHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhh
Confidence 999999999999999999999999973 44444444333 5799999999998 554 99999999888876
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 692 ~ 692 (716)
T KOG0058|consen 692 K 692 (716)
T ss_pred C
Confidence 5
No 247
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.97 E-value=2.6e-32 Score=243.24 Aligned_cols=198 Identities=15% Similarity=0.103 Sum_probs=147.9
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-----CCe
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PDV 151 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-----~~~ 151 (313)
+++++|+++.|.+......+|+|+||+|++||+++|+||||||||||+++|+|+++..-|++|+|.++|.+. .+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 578999999996531123399999999999999999999999999999999999841114899999999653 356
Q ss_pred EEEEecCCCCCCcccCCcccChHHHHHhcCCC---CCccHHHHHH-HHHHhhc--CCCccCCCCCCcCCCcchhhhhhcc
Q 021362 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP---WTFNPLLLLN-CLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 152 i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~---~~~~~~~~~~-~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~ 225 (313)
++|++|++..++ .+|+.||+.+........ .......+.+ .++.++. ..+..+.+||+||+||++||++++.
T Consensus 83 i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 160 (226)
T cd03234 83 VAYVRQDDILLP--GLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLW 160 (226)
T ss_pred EEEeCCCCccCc--CCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHh
Confidence 999999965443 489999998865433211 1111223344 6777763 2456778999999999999999999
Q ss_pred CceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcCh-HHHHH---HHh----hcccccC
Q 021362 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDL-DTAMQ---RVL----KRHISTG 276 (313)
Q Consensus 226 ~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~-~~~~~---rv~----griv~~G 276 (313)
++++|++|+|+..||. .+++.|.++.+. .+++||++ +++.. +++ |++++.|
T Consensus 161 ~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 161 DPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999 555556555432 46999998 46655 443 6665543
No 248
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.1e-32 Score=273.24 Aligned_cols=193 Identities=13% Similarity=0.073 Sum_probs=151.7
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
++|+++|+++.|+ . +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 264 ~~l~~~~l~~~~~--~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~~~~~~~~~ 334 (510)
T PRK09700 264 TVFEVRNVTSRDR--K----KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK---RAGGEIRLNGKDISPRSPLD 334 (510)
T ss_pred cEEEEeCccccCC--C----cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCEECCCCCHHH
Confidence 4799999999763 3 8999999999999999999999999999999999999 9999999998653
Q ss_pred --CCeEEEEecCC--CCCCcccCCcccChHHHHHhc--------CC-CCCccHHHHHHHHHHhhcC---CCccCCCCCCc
Q 021362 149 --PDVATVLPMDG--FHLYLSQLDAMEDPKEAHARR--------GA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHG 212 (313)
Q Consensus 149 --~~~i~~v~qd~--~~~~~~~ltv~e~~~~~~~~~--------~~-~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG 212 (313)
.+.++|++|+. ..++ +.+|+.+|+.+....+ +. ......+++.++++.++.. .++++.+||||
T Consensus 335 ~~~~~i~~v~q~~~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 413 (510)
T PRK09700 335 AVKKGMAYITESRRDNGFF-PNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGG 413 (510)
T ss_pred HHHCCcEEccCccccCCCc-CCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChH
Confidence 13589999984 2233 3589999987653211 11 1112234567888888853 46677899999
Q ss_pred CCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCc
Q 021362 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKP 278 (313)
Q Consensus 213 ~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~ 278 (313)
|||||+||++++.++++|++|+|+..||. .+++.|+++.++ .|++|||++++.. |++ |+++..++.
T Consensus 414 q~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 414 NQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 99999999999999999999999999999 445555554332 4799999999877 554 888776654
No 249
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1.5e-32 Score=232.76 Aligned_cols=199 Identities=16% Similarity=0.137 Sum_probs=158.8
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCC-CCCCC----
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VKPPD---- 150 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g-~~~~~---- 150 (313)
++++++|++++|++.. +|+++||++.+||.-+|+|||||||||++..|+|.-+ |+.|+++++| .+..+
T Consensus 4 ~iL~~~~vsVsF~GF~----Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr---p~~G~v~f~g~~dl~~~~e~ 76 (249)
T COG4674 4 IILYLDGVSVSFGGFK----ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR---PQEGEVLFDGDTDLTKLPEH 76 (249)
T ss_pred ceEEEeceEEEEccee----eeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC---CCcceEEEcCchhhccCCHH
Confidence 4799999999999998 9999999999999999999999999999999999999 9999999999 55322
Q ss_pred -----eEEEEecCCCCCCcccCCcccChHHHHHhcC--------CCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCC
Q 021362 151 -----VATVLPMDGFHLYLSQLDAMEDPKEAHARRG--------APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGD 215 (313)
Q Consensus 151 -----~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~--------~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kq 215 (313)
-||--||.+..+. .+||+||+.+...... ........++.++|+.+++. .+.....||+||||
T Consensus 77 ~IAr~GIGRKFQ~PtVfe--~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQ 154 (249)
T COG4674 77 RIARAGIGRKFQKPTVFE--NLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQ 154 (249)
T ss_pred HHHHhccCccccCCeehh--hccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhh
Confidence 2677889876555 4999999998754321 12234456889999988854 45566699999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
++.|.+.++.+|.+|++|+|+..+-+ ..-+.|+.+... .++|.|||.++.. +|- |.+.+.|+.+++-
T Consensus 155 wLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~ 234 (249)
T COG4674 155 WLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQ 234 (249)
T ss_pred hhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhh
Confidence 99996666666666666666666655 456666666544 5799999999988 333 9999999998884
Q ss_pred H
Q 021362 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 235 ~ 235 (249)
T COG4674 235 N 235 (249)
T ss_pred c
Confidence 3
No 250
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.97 E-value=2.3e-32 Score=250.41 Aligned_cols=189 Identities=16% Similarity=0.173 Sum_probs=150.5
Q ss_pred EEEccceEEcc--ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 78 VEARCMDEVYD--ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 78 l~~~~l~~~y~--~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
|+++|+++.|. +.. +|+|+||+|++||+++|+|+||||||||+++|+|++ +++|+|+++|.+.
T Consensus 3 i~~~nls~~~~~~~~~----~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~----~~~G~I~i~g~~i~~~~~~~ 74 (275)
T cd03289 3 MTVKDLTAKYTEGGNA----VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL----NTEGDIQIDGVSWNSVPLQK 74 (275)
T ss_pred EEEEEEEEEeCCCCCc----ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc----CCCcEEEECCEEhhhCCHHH
Confidence 78999999995 334 899999999999999999999999999999999998 5689999999663
Q ss_pred -CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCC-----------CCCCcCC
Q 021362 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAP-----------SFDHGVG 214 (313)
Q Consensus 149 -~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~-----------~LSgG~k 214 (313)
++.++|++|++..+. .|+++|+... + ....+++.++++.++.. .+..+. .||+||+
T Consensus 75 lr~~i~~v~q~~~lf~---~tv~~nl~~~----~---~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~ 144 (275)
T cd03289 75 WRKAFGVIPQKVFIFS---GTFRKNLDPY----G---KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHK 144 (275)
T ss_pred HhhhEEEECCCcccch---hhHHHHhhhc----c---CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHH
Confidence 246999999976443 4999998532 1 12235566777777632 222232 4999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHH
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~ 282 (313)
||+++|+|++.++++|++|+++..||. .+.+.|+++... .|+|||+++++.. |++ |++++.|+++++.
T Consensus 145 qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~ 224 (275)
T cd03289 145 QLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLL 224 (275)
T ss_pred HHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHh
Confidence 999999999999999999999999999 445555554432 4799999998876 655 9999999999986
Q ss_pred HH
Q 021362 283 KW 284 (313)
Q Consensus 283 ~~ 284 (313)
..
T Consensus 225 ~~ 226 (275)
T cd03289 225 NE 226 (275)
T ss_pred hC
Confidence 63
No 251
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=5e-32 Score=238.26 Aligned_cols=181 Identities=15% Similarity=0.146 Sum_probs=142.5
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
.|+++|+++.|++.. ..+|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 6 EIEVENLSVRYAPDL--PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE---AEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred eEEEEEEEEEeCCCC--cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEhHHCCHHHH
Confidence 599999999997521 129999999999999999999999999999999999999 9999999999653
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCce
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar 228 (313)
.+.++|++|++.. +. .|+.+|+.+.. ....+.+.+.++ .+.++.+|||||+||++||++++.+++
T Consensus 81 ~~~i~~v~q~~~~-~~--~tv~~~l~~~~-------~~~~~~~~~~l~-----~~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 81 RSSLTIIPQDPTL-FS--GTIRSNLDPFD-------EYSDEEIYGALR-----VSEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred HhhEEEEecCCcc-cC--ccHHHHhcccC-------CCCHHHHHHHhh-----ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 3469999999643 33 59999985421 112333444444 355677999999999999999999999
Q ss_pred EEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCC
Q 021362 229 VVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGK 277 (313)
Q Consensus 229 ~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~ 277 (313)
++++|+|+..||. .+++.|+++... .|++|||++++.. |++ |++++.|+
T Consensus 146 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 146 VLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 9999999999999 455555555332 4799999999865 443 66666554
No 252
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=2.1e-32 Score=242.86 Aligned_cols=185 Identities=17% Similarity=0.186 Sum_probs=142.8
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------C
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------P 149 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--------~ 149 (313)
|+++|+++.|++.. ..+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 3 l~~~~l~~~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 77 (221)
T cd03244 3 IEFKNVSLRYRPNL--PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE---LSSGSILIDGVDISKIGLHDLR 77 (221)
T ss_pred EEEEEEEEecCCCC--cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhHhCCHHHHh
Confidence 78999999997421 129999999999999999999999999999999999999 9999999998653 3
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC-------------CCccCCCCCCcCCCc
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVGDP 216 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~LSgG~kqR 216 (313)
+.++|++|++. ++. .|+.||+.+.. ....+++.+.++.++.. .+..+.+||+||+||
T Consensus 78 ~~i~~~~q~~~-l~~--~tv~enl~~~~-------~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr 147 (221)
T cd03244 78 SRISIIPQDPV-LFS--GTIRSNLDPFG-------EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQL 147 (221)
T ss_pred hhEEEECCCCc-ccc--chHHHHhCcCC-------CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHH
Confidence 45899999976 333 58999985321 11233445555544411 134667999999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCC
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGK 277 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~ 277 (313)
++||++++.+++++++|+|+..||. .+++.|+++... .+++|||++++.. +++ |++++.|+
T Consensus 148 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 148 LCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 9999999999999999999999999 455555555332 4799999999866 433 66665553
No 253
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.97 E-value=1.9e-32 Score=280.39 Aligned_cols=193 Identities=16% Similarity=0.140 Sum_probs=157.3
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
-|+++||+++|++.. ..+|+|+||+|++||.++|+|+||||||||+|+|+|++. |++|+|.++|.+..
T Consensus 451 ~I~~~nvsf~Y~~~~--~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l 525 (686)
T TIGR03797 451 AIEVDRVTFRYRPDG--PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET---PESGSVFYDGQDLAGLDVQAV 525 (686)
T ss_pred eEEEEEEEEEcCCCC--ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcCcCCHHHH
Confidence 499999999996421 239999999999999999999999999999999999999 99999999997743
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCCc----cCCCCCCcCCC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~~----~~~~LSgG~kq 215 (313)
+.++|++||++.+. -|++||+.++ .+ .+.+++.++++..+. +.+. ....|||||||
T Consensus 526 r~~i~~v~Q~~~lf~---gTI~eNi~~~-----~~--~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQ 595 (686)
T TIGR03797 526 RRQLGVVLQNGRLMS---GSIFENIAGG-----AP--LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQ 595 (686)
T ss_pred HhccEEEccCCccCc---ccHHHHHhcC-----CC--CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHH
Confidence 46999999977654 4999999764 22 244556666665541 2222 23479999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccceEEEEcChHHHHH--HHh----hcccccCCchHHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~~ 284 (313)
|++||||+..++++|++|+++.-||. .+.+.|+++....|+|||+++.+.. |++ |++++.|+.+++.+.
T Consensus 596 RialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~ 674 (686)
T TIGR03797 596 RLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR 674 (686)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999 5566666664456899999999877 665 999999999888643
No 254
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.97 E-value=5.7e-32 Score=246.62 Aligned_cols=198 Identities=14% Similarity=0.158 Sum_probs=152.6
Q ss_pred EEEEccceEEcccc----------------ccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCce
Q 021362 77 VVEARCMDEVYDAL----------------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (313)
Q Consensus 77 ~l~~~~l~~~y~~~----------------~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~ 140 (313)
-|+++||+|.|... .....+|+++||+|++|++++|+||||||||||+++|+|+++ |++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~---p~~G~ 80 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS---PTVGK 80 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceE
Confidence 37889998888542 123458999999999999999999999999999999999999 99999
Q ss_pred eecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcch
Q 021362 141 SFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 141 i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ 218 (313)
|.++|. +++++|+.... ..+|+.+|+.+.....+.......+.+..+++.++. ..+..+.+||+||+||++
T Consensus 81 I~~~g~-----~~~~~~~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~ 153 (264)
T PRK13546 81 VDRNGE-----VSVIAISAGLS--GQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLG 153 (264)
T ss_pred EEECCE-----EeEEecccCCC--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHH
Confidence 999884 45667764332 247999999875444333222223334556666553 345577799999999999
Q ss_pred hhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 219 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 219 ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
+|++++.++++|++|+|+..||. .+++.|.++.. ..|++|||++++.. +++ |+++..|+++++...
T Consensus 154 Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (264)
T PRK13546 154 FSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPK 233 (264)
T ss_pred HHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHHH
Confidence 99999999999999999999998 45555555532 24799999999876 554 899999998887654
No 255
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.97 E-value=7e-33 Score=248.66 Aligned_cols=193 Identities=13% Similarity=0.123 Sum_probs=146.2
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------C
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------P 149 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--------~ 149 (313)
|+++|+++.|++.. ...+|+|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 1 l~i~~l~~~~~~~~-~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 76 (238)
T cd03249 1 IEFKNVSFRYPSRP-DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD---PTSGEILLDGVDIRDLNLRWLR 76 (238)
T ss_pred CeEEEEEEecCCCC-CccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC---CCCCEEEECCEehhhcCHHHHH
Confidence 46899999997421 1238999999999999999999999999999999999999 9999999999653 2
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHH---------HHHHHhh----cCCCccCCCCCCcCCCc
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLL---------NCLKNLR----NQGSVYAPSFDHGVGDP 216 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~---------~~l~~l~----~~~~~~~~~LSgG~kqR 216 (313)
..++|++|++..+ . .|+.||+.+..... ..+.+. ++++.+. ...+..+.+|||||+||
T Consensus 77 ~~i~~~~q~~~~~-~--~tv~e~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qr 147 (238)
T cd03249 77 SQIGLVSQEPVLF-D--GTIAENIRYGKPDA------TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQR 147 (238)
T ss_pred hhEEEECCchhhh-h--hhHHHHhhccCCCC------CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHH
Confidence 3599999996533 2 58999987642211 111111 2222221 12344567999999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
++||++++.++++|++|+|+..||. .+++.|+++.. ..+++|||++++.. +++ |++++.|+.+++..
T Consensus 148 v~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 148 IAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA 226 (238)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhh
Confidence 9999999999999999999999999 55566655542 24799999999865 544 88888888777644
No 256
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.97 E-value=1.3e-32 Score=272.06 Aligned_cols=196 Identities=14% Similarity=0.091 Sum_probs=153.2
Q ss_pred EEEEccceEEcc---ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-CCceeecCCCCC----
Q 021362 77 VVEARCMDEVYD---ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFDSQVKP---- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~---~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-~~G~i~~~g~~~---- 148 (313)
+|+++|+++.|+ +.. +|+++||+|++||+++|+||||||||||+|+|+|+++ | ++|+|.++|++.
T Consensus 257 ~l~~~~l~~~~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~~G~i~~~g~~~~~~~ 329 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRK----RVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP---GKFEGNVFINGKPVDIRN 329 (500)
T ss_pred eEEEeCCccccccccccc----ccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCeEEEECCEECCCCC
Confidence 799999999994 334 8999999999999999999999999999999999997 7 799999998653
Q ss_pred -----CCeEEEEecCCC--CCCcccCCcccChHHHHH--hcC---CCCCccHHHHHHHHHHhhcC---CCccCCCCCCcC
Q 021362 149 -----PDVATVLPMDGF--HLYLSQLDAMEDPKEAHA--RRG---APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV 213 (313)
Q Consensus 149 -----~~~i~~v~qd~~--~~~~~~ltv~e~~~~~~~--~~~---~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~ 213 (313)
.+.++|++|+.. .++ +.+|+.+|+.+... ... .......+++.++++.++.. .++++.+|||||
T Consensus 330 ~~~~~~~~i~~v~q~~~~~~l~-~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 408 (500)
T TIGR02633 330 PAQAIRAGIAMVPEDRKRHGIV-PILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGN 408 (500)
T ss_pred HHHHHhCCCEEcCcchhhCCcC-CCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHH
Confidence 235899999952 222 25899999987532 111 11112335678889998853 366778999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCch
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ 279 (313)
|||++||++++.++++|++|+|+..||. .+++.|.++.++ .|++|||++++.. |++ |+++..++..
T Consensus 409 kqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 409 QQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNH 488 (500)
T ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccc
Confidence 9999999999999999999999999999 444455555433 4799999999986 554 7777665444
Q ss_pred H
Q 021362 280 D 280 (313)
Q Consensus 280 e 280 (313)
+
T Consensus 489 ~ 489 (500)
T TIGR02633 489 A 489 (500)
T ss_pred c
Confidence 3
No 257
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.97 E-value=1.7e-32 Score=248.00 Aligned_cols=189 Identities=17% Similarity=0.145 Sum_probs=148.1
Q ss_pred EEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC--------C
Q 021362 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--------D 150 (313)
Q Consensus 79 ~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~--------~ 150 (313)
+++||++. . +|+|+||+|++|++++|+||||||||||+++|+|++ |.+|+|.++|.+.. .
T Consensus 2 ~~~~l~~~----~----~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~----~~~G~i~~~g~~i~~~~~~~~~~ 69 (248)
T PRK03695 2 QLNDVAVS----T----RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL----PGSGSIQFAGQPLEAWSAAELAR 69 (248)
T ss_pred cccccchh----c----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC----CCCeEEEECCEecCcCCHHHHhh
Confidence 56778774 2 799999999999999999999999999999999998 45999999997532 3
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhcc---
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL--- 225 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~--- 225 (313)
.++|++|++..++ .+|+.+|+.+.... +.......+++.++++.++.. .+..+.+||+||+||++||++++.
T Consensus 70 ~i~~v~q~~~~~~--~~tv~~nl~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~ 146 (248)
T PRK03695 70 HRAYLSQQQTPPF--AMPVFQYLTLHQPD-KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWP 146 (248)
T ss_pred heEEecccCccCC--CccHHHHHHhcCcc-CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence 4899999865444 37999998765321 112222345677888888743 366778999999999999999997
Q ss_pred ----CceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 226 ----QHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 226 ----~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
++++|++|+|+..||. .+.+.|+++.++ .|++|||++++.. +++ |++++.|.++++.
T Consensus 147 ~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 147 DINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred ccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 6799999999999999 455555555432 4699999998876 554 8999999887764
No 258
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.97 E-value=7.8e-32 Score=243.19 Aligned_cols=196 Identities=16% Similarity=0.016 Sum_probs=144.6
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh--cccCCCCceeecCCCCCC-----
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~--~~~~p~~G~i~~~g~~~~----- 149 (313)
||+++|+++.|++.. +|+++||+|++|++++|+||||||||||+++|+|++ + |++|+|.++|.+..
T Consensus 1 ~i~~~nl~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~g~~~~~~~~~ 73 (248)
T PRK09580 1 MLSIKDLHVSVEDKA----ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYE---VTGGTVEFKGKDLLELSPE 73 (248)
T ss_pred CeEEEEEEEEeCCee----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCC---CCceEEEECCCccccCCHH
Confidence 489999999998766 999999999999999999999999999999999994 6 99999999997532
Q ss_pred ----CeEEEEecCCCCCCcccCCcccChHHHHHh---cCCCCC----ccHHHHHHHHHHhhcC---CCccCC-CCCCcCC
Q 021362 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHAR---RGAPWT----FNPLLLLNCLKNLRNQ---GSVYAP-SFDHGVG 214 (313)
Q Consensus 150 ----~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~---~~~~~~----~~~~~~~~~l~~l~~~---~~~~~~-~LSgG~k 214 (313)
..++|++|++..+. .++..+++...... ...... ...+.+.+.++.++.. .+..+. +|||||+
T Consensus 74 ~~~~~~i~~~~q~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~ 151 (248)
T PRK09580 74 DRAGEGIFMAFQYPVEIP--GVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEK 151 (248)
T ss_pred HHhhcceEEEecCchhcc--chhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHH
Confidence 34899999965433 24444433222111 000000 1123456667766642 334444 7999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH----HHh----hcccccCCch
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ----RVL----KRHISTGKPP 279 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~----rv~----griv~~G~~~ 279 (313)
||++||++++.++++|++|+|+..||. .+.+.|+++.+. .|++|||++++.. +++ |+++..|+++
T Consensus 152 qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~ 231 (248)
T PRK09580 152 KRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 231 (248)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHH
Confidence 999999999999999999999999999 344444455432 4799999998864 333 8888888776
Q ss_pred HH
Q 021362 280 DV 281 (313)
Q Consensus 280 ev 281 (313)
.+
T Consensus 232 ~~ 233 (248)
T PRK09580 232 LV 233 (248)
T ss_pred HH
Confidence 44
No 259
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.97 E-value=3.3e-32 Score=273.73 Aligned_cols=195 Identities=13% Similarity=0.107 Sum_probs=157.6
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
-|+++|+++.|++.. ..+|+|+||+|++|+.++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 341 ~i~~~~vsf~y~~~~--~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~~ 415 (582)
T PRK11176 341 DIEFRNVTFTYPGKE--VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD---IDEGEILLDGHDLRDYTLASL 415 (582)
T ss_pred eEEEEEEEEecCCCC--CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC---CCCceEEECCEEhhhcCHHHH
Confidence 499999999996521 239999999999999999999999999999999999999 9999999999764
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCcc----CCCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~LSgG~kq 215 (313)
.+.++|++||++.+. -|++||+.++ .+...+.+++.++++..+ .+.+.. ...|||||||
T Consensus 416 ~~~i~~v~Q~~~lf~---~Ti~~Ni~~~-----~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQ 487 (582)
T PRK11176 416 RNQVALVSQNVHLFN---DTIANNIAYA-----RTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQ 487 (582)
T ss_pred HhhceEEccCceeec---chHHHHHhcC-----CCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHH
Confidence 246999999977554 5999999654 222234556666666544 222332 2479999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++|||++..++++|++|+++.-||+ .+.+.|.++.. ..|+|||+++.+.. +++ |++++.|+.+++.+
T Consensus 488 Ri~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 488 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred HHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999 55666666643 35799999998876 665 99999999998865
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 568 ~ 568 (582)
T PRK11176 568 Q 568 (582)
T ss_pred C
Confidence 4
No 260
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.97 E-value=2.8e-32 Score=280.20 Aligned_cols=194 Identities=16% Similarity=0.116 Sum_probs=156.7
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
.|+++|++++|++.. ..+|+|+||+|++||.++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 477 ~I~~~~vsf~y~~~~--~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l 551 (710)
T TIGR03796 477 YVELRNITFGYSPLE--PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ---PWSGEILFDGIPREEIPREVL 551 (710)
T ss_pred eEEEEEEEEecCCCC--CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEeHHHCCHHHH
Confidence 499999999997521 239999999999999999999999999999999999999 9999999999773
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCCc----cCCCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~~----~~~~LSgG~kq 215 (313)
++.++|++|+++.+. -|++||+.++ .+ ..+.+++.++++..+. +.+. ....|||||||
T Consensus 552 r~~i~~v~Q~~~lf~---gTi~eNi~l~-----~~-~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQ 622 (710)
T TIGR03796 552 ANSVAMVDQDIFLFE---GTVRDNLTLW-----DP-TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQ 622 (710)
T ss_pred HhheeEEecCChhhh---ccHHHHhhCC-----CC-CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHH
Confidence 356999999977554 5999999753 12 2344556666665441 2222 23479999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccceEEEEcChHHHHH--HHh----hcccccCCchHHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~~ 284 (313)
|++||||+..++++|++|+++.-||+ .+.+.|++.....|+|||+++.+.. |++ |++++.|+.+++.+.
T Consensus 623 RiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~ 701 (710)
T TIGR03796 623 RLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAV 701 (710)
T ss_pred HHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHc
Confidence 99999999999999999999999999 4555555533345799999999877 666 999999999998653
No 261
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.97 E-value=2.4e-32 Score=234.98 Aligned_cols=149 Identities=15% Similarity=0.169 Sum_probs=124.8
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------CC
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PD 150 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------~~ 150 (313)
|+++|+++.|++.. ..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+. .+
T Consensus 1 i~~~~~~~~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 75 (178)
T cd03247 1 LSINNVSFSYPEQE--QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGVPVSDLEKALSS 75 (178)
T ss_pred CEEEEEEEEeCCCC--ccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCEEHHHHHHHHHh
Confidence 46899999997641 128999999999999999999999999999999999999 9999999999753 24
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEE
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~L 230 (313)
.++|++|++.. +. .|++||+ +.+||+||+||++||++++.++++|
T Consensus 76 ~i~~~~q~~~~-~~--~tv~~~i--------------------------------~~~LS~G~~qrv~laral~~~p~~l 120 (178)
T cd03247 76 LISVLNQRPYL-FD--TTLRNNL--------------------------------GRRFSGGERQRLALARILLQDAPIV 120 (178)
T ss_pred hEEEEccCCee-ec--ccHHHhh--------------------------------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 58999998643 32 4777765 5699999999999999999999999
Q ss_pred EEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH
Q 021362 231 IVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ 266 (313)
Q Consensus 231 i~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~ 266 (313)
++|+|+..||. .+++.|.++... .+++|||++++..
T Consensus 121 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 162 (178)
T cd03247 121 LLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH 162 (178)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh
Confidence 99999999998 455555555332 4799999998854
No 262
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.97 E-value=4.7e-32 Score=263.94 Aligned_cols=198 Identities=15% Similarity=0.124 Sum_probs=153.9
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
++++++||++.|++.. ...+|+++||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+. ++
T Consensus 20 ~mL~lknL~~~~~~~~-~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~---P~sGeI~I~G~~~-----~i 90 (549)
T PRK13545 20 PFDKLKDLFFRSKDGE-YHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM---PNKGTVDIKGSAA-----LI 90 (549)
T ss_pred ceeEEEEEEEecCCCc-cceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCceEEEECCEee-----eE
Confidence 3799999999997642 1238999999999999999999999999999999999999 9999999998642 22
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEEEEc
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d 233 (313)
.+.... .+.+|+.||+.+.....+.......+++.++++.++. ..+.++.+||||||||++||+|++.++++|++|
T Consensus 91 ~~~~~l--~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLD 168 (549)
T PRK13545 91 AISSGL--NGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVID 168 (549)
T ss_pred Eecccc--CCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 222222 2247999999875443333322233445677777774 346677899999999999999999999999999
Q ss_pred CCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 234 GNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 234 ~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
+|+..||. .+++.|.++.+. .|++|||++++.. |++ |+++..|+++++...
T Consensus 169 EPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 169 EALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 99999999 455566555432 4799999999876 554 899999998887643
No 263
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.97 E-value=4.3e-32 Score=236.60 Aligned_cols=158 Identities=15% Similarity=0.098 Sum_probs=128.3
Q ss_pred EEEEccceEEccccc--cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh--cccCCCCceeecCCCCC----
Q 021362 77 VVEARCMDEVYDALA--QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVKP---- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~--~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~--~~~~p~~G~i~~~g~~~---- 148 (313)
.|+++|+++.|++.. ....+|+++||++++|++++|+||||||||||+++|+|++ + |++|+|.++|++.
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~---~~~G~i~~~g~~~~~~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL---GVSGEVLINGRPLDKRS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCceEEEECCEeCchHh
Confidence 488999999997510 0123999999999999999999999999999999999999 8 9999999999763
Q ss_pred -CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCc
Q 021362 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 149 -~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~a 227 (313)
...++|++|++..++ .+|+.+|+.+..... +||+||+||++||++++.++
T Consensus 80 ~~~~i~~~~q~~~~~~--~~t~~~~i~~~~~~~---------------------------~LS~G~~qrv~laral~~~p 130 (194)
T cd03213 80 FRKIIGYVPQDDILHP--TLTVRETLMFAAKLR---------------------------GLSGGERKRVSIALELVSNP 130 (194)
T ss_pred hhheEEEccCcccCCC--CCcHHHHHHHHHHhc---------------------------cCCHHHHHHHHHHHHHHcCC
Confidence 346899999965433 479999886542110 89999999999999999999
Q ss_pred eEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChH-HHHH
Q 021362 228 KVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLD-TAMQ 266 (313)
Q Consensus 228 r~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~-~~~~ 266 (313)
+++++|+|+..||. .+++.|+++.+ ..+++|||++ ++..
T Consensus 131 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~ 177 (194)
T cd03213 131 SLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFE 177 (194)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHH
Confidence 99999999999999 45555555543 2479999997 4543
No 264
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.97 E-value=1.9e-32 Score=244.00 Aligned_cols=184 Identities=14% Similarity=0.109 Sum_probs=140.3
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
++|+++|+++.|++.. ...+|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 10 ~~l~~~~l~~~~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 85 (226)
T cd03248 10 GIVKFQNVTFAYPTRP-DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ---PQGGQVLLDGKPISQYEHKY 85 (226)
T ss_pred ceEEEEEEEEEeCCCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCcEEEECCCchHHcCHHH
Confidence 4799999999997521 1239999999999999999999999999999999999999 9999999999753
Q ss_pred -CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC---CccHHHHHHHHHHh--h--cCCCccCCCCCCcCCCcchhh
Q 021362 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW---TFNPLLLLNCLKNL--R--NQGSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 149 -~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~---~~~~~~~~~~l~~l--~--~~~~~~~~~LSgG~kqRv~ia 220 (313)
.+.++|++|++.. +. .|+.+|+.+......... ......+.++++.+ + ...+.++.+|||||+||++||
T Consensus 86 ~~~~i~~~~q~~~l-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~la 162 (226)
T cd03248 86 LHSKVSLVGQEPVL-FA--RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIA 162 (226)
T ss_pred HHhhEEEEecccHH-Hh--hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHH
Confidence 2358999999653 32 589999876432110000 00001134556666 3 224556779999999999999
Q ss_pred hhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH
Q 021362 221 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ 266 (313)
Q Consensus 221 ~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~ 266 (313)
++++.++++|++|+|+..||. .+++.|+++.+. .+++|||++++..
T Consensus 163 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 214 (226)
T cd03248 163 RALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVER 214 (226)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh
Confidence 999999999999999999999 445555554432 4799999998853
No 265
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.97 E-value=5.7e-32 Score=272.39 Aligned_cols=191 Identities=14% Similarity=0.135 Sum_probs=152.9
Q ss_pred EEEEccceEEcc-ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 77 ~l~~~~l~~~y~-~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
-|+++||++.|. +.. +|+|+||+|++|+.++|+||||||||||+++|+|++ |++|+|.++|.+..
T Consensus 349 ~i~~~~vsf~~~~~~~----vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~----p~~G~I~i~g~~i~~~~~~~ 420 (588)
T PRK11174 349 TIEAEDLEILSPDGKT----LAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL----PYQGSLKINGIELRELDPES 420 (588)
T ss_pred eEEEEeeEEeccCCCe----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC----CCCcEEEECCEecccCCHHH
Confidence 499999997654 444 999999999999999999999999999999999998 78999999997643
Q ss_pred --CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCcc----CCCCCCcCC
Q 021362 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHGVG 214 (313)
Q Consensus 150 --~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~LSgG~k 214 (313)
+.++||+|+++.+. -|++||+.++. + ....+++.++++..+ .+.+.. ...||||||
T Consensus 421 lr~~i~~v~Q~~~LF~---~TI~eNI~~g~-----~-~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQr 491 (588)
T PRK11174 421 WRKHLSWVGQNPQLPH---GTLRDNVLLGN-----P-DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQA 491 (588)
T ss_pred HHhheEEecCCCcCCC---cCHHHHhhcCC-----C-CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHH
Confidence 46999999987654 59999997741 2 223455555555443 223332 337999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHH
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~ 282 (313)
||++||||++.++++|++|+++.-||. .+.+.|.++.+ ..|+|||+++.+.. +++ |++++.|+.+++.
T Consensus 492 QRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~ 571 (588)
T PRK11174 492 QRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELS 571 (588)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHH
Confidence 999999999999999999999999999 45555666543 24799999998877 655 9999999999886
Q ss_pred HH
Q 021362 283 KW 284 (313)
Q Consensus 283 ~~ 284 (313)
+.
T Consensus 572 ~~ 573 (588)
T PRK11174 572 QA 573 (588)
T ss_pred hc
Confidence 54
No 266
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=1.4e-31 Score=267.54 Aligned_cols=196 Identities=15% Similarity=0.055 Sum_probs=154.1
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
++|+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++. ..++|+
T Consensus 321 ~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~~~---~~i~~v 390 (552)
T TIGR03719 321 KVIEAENLSKGFGDKL----LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ---PDSGTIKIGET---VKLAYV 390 (552)
T ss_pred eEEEEeeEEEEECCee----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEECCc---eEEEEE
Confidence 4799999999998766 9999999999999999999999999999999999999 99999998542 258999
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCceEEEE
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~ 232 (313)
+|+...++ +.+|+.+|+.+.....+... ......++++.++.. .++++.+||||||||++||++++.++++|++
T Consensus 391 ~q~~~~~~-~~~tv~e~l~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllL 467 (552)
T TIGR03719 391 DQSRDALD-PNKTVWEEISGGLDIIQLGK--REVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLL 467 (552)
T ss_pred eCCccccC-CCCcHHHHHHhhccccccCc--chHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 99853233 25899999987643222221 123456788888853 3667889999999999999999999999999
Q ss_pred cCCccccCh----hhHHHHHhhccceEEEEcChHHHHH---HHh-----hccc-ccCCchHHHHH
Q 021362 233 DGNYLFLDG----GVWKDVSSMFDEKWFIEVDLDTAMQ---RVL-----KRHI-STGKPPDVAKW 284 (313)
Q Consensus 233 d~~~lllDE----~~~~~l~~l~~~~i~vtHd~~~~~~---rv~-----griv-~~G~~~ev~~~ 284 (313)
|+|+..||. .+++.|.++....|+||||++++.. |++ |+++ ..|..++....
T Consensus 468 DEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~~ 532 (552)
T TIGR03719 468 DEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEED 532 (552)
T ss_pred eCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHHH
Confidence 999999999 4555555554446799999999876 544 2554 45666555433
No 267
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.1e-32 Score=245.14 Aligned_cols=190 Identities=14% Similarity=0.147 Sum_probs=145.5
Q ss_pred EEEccceEEcc-ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 78 VEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 78 l~~~~l~~~y~-~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
|+++|+++.|+ +.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~~~~----~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~v~~~g~~~~~~~~~~~ 73 (236)
T cd03253 1 IEFENVTFAYDPGRP----VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD---VSSGSILIDGQDIREVTLDSL 73 (236)
T ss_pred CEEEEEEEEeCCCCc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEhhhCCHHHH
Confidence 46899999996 344 8999999999999999999999999999999999999 99999999996532
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHH---------HHHHhhc----CCCccCCCCCCcCCC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN---------CLKNLRN----QGSVYAPSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~---------~l~~l~~----~~~~~~~~LSgG~kq 215 (313)
+.++|++|++..+ . .|+.+|+.+.... . ....+.+ .++.+.. ..+..+.+||+||+|
T Consensus 74 ~~~i~~~~q~~~~~-~--~tv~~nl~~~~~~--~----~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~ 144 (236)
T cd03253 74 RRAIGVVPQDTVLF-N--DTIGYNIRYGRPD--A----TDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQ 144 (236)
T ss_pred HhhEEEECCCChhh-c--chHHHHHhhcCCC--C----CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHH
Confidence 3489999996543 3 5999998764211 1 1111222 2222211 123456699999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||++++.++++|++|+|+..||. .+.+.|.++.+ ..|++||+++++.. |++ |+++..|+.+++..
T Consensus 145 rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 145 RVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA 224 (236)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999999999999 45555555543 24799999999866 554 88888888776643
No 268
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1.3e-32 Score=228.13 Aligned_cols=178 Identities=14% Similarity=0.120 Sum_probs=148.7
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
.++++++.+.-++.. +|+++||.+.+||+++|.||||||||||+|+++-++. |++|+++|.|++..
T Consensus 3 lle~kq~~y~a~~a~----il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis---p~~G~l~f~Ge~vs~~~pea~ 75 (223)
T COG4619 3 LLELKQVGYLAGDAK----ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDVSTLKPEAY 75 (223)
T ss_pred chHHHHHHhhcCCCe----eecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC---CCCceEEEcCccccccChHHH
Confidence 566777766666666 9999999999999999999999999999999999999 99999999998743
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhcc
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~ 225 (313)
..++|+.|.+..+. -||++|+.|+...+. ...+...+..+|++++.. ..+.+.+|||||+||+++++.+..
T Consensus 76 Rq~VsY~~Q~paLfg---~tVeDNlifP~~~r~--rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~ 150 (223)
T COG4619 76 RQQVSYCAQTPALFG---DTVEDNLIFPWQIRN--RRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQF 150 (223)
T ss_pred HHHHHHHHcCccccc---cchhhccccchHHhc--cCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhc
Confidence 35899999977665 399999999876653 345788899999999854 466788999999999999999999
Q ss_pred CceEEEEcCCccccChhhHHHH----Hhhcc-c---eEEEEcChHHHHH
Q 021362 226 QHKVVIVDGNYLFLDGGVWKDV----SSMFD-E---KWFIEVDLDTAMQ 266 (313)
Q Consensus 226 ~ar~Li~d~~~lllDE~~~~~l----~~l~~-~---~i~vtHd~~~~~~ 266 (313)
-+.+|++|+.+.-|||...+.| ..+.. + .++||||.+.+.+
T Consensus 151 ~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~r 199 (223)
T COG4619 151 MPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIR 199 (223)
T ss_pred CCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhh
Confidence 9999999999999999444443 44442 2 3699999999876
No 269
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.1e-31 Score=235.58 Aligned_cols=167 Identities=16% Similarity=0.127 Sum_probs=132.6
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------C
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------P 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------~ 149 (313)
.+.++|++|.|+.......+|+++||+|++|++++|+||||||||||+++|+|+++...|++|+|.++|.+. .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 588999999997643344599999999999999999999999999999999999861124799999999653 2
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceE
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~ 229 (313)
+.++|++|+...++ .+|+.+|+.+..... .+..+..||+||+||++||++++.++++
T Consensus 83 ~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~---------------------~~~~~~~LS~Ge~qrl~laral~~~p~l 139 (202)
T cd03233 83 GEIIYVSEEDVHFP--TLTVRETLDFALRCK---------------------GNEFVRGISGGERKRVSIAEALVSRASV 139 (202)
T ss_pred ceEEEEecccccCC--CCcHHHHHhhhhhhc---------------------cccchhhCCHHHHHHHHHHHHHhhCCCE
Confidence 35899999865444 479999987653211 3456679999999999999999999999
Q ss_pred EEEcCCccccCh----hhHHHHHhhccc----eEEE-EcChHHHHH
Q 021362 230 VIVDGNYLFLDG----GVWKDVSSMFDE----KWFI-EVDLDTAMQ 266 (313)
Q Consensus 230 Li~d~~~lllDE----~~~~~l~~l~~~----~i~v-tHd~~~~~~ 266 (313)
|++|+|+..||. .+++.|+++.++ .+++ +|+.+++..
T Consensus 140 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~ 185 (202)
T cd03233 140 LCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYD 185 (202)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHH
Confidence 999999999999 566666666432 2454 455666655
No 270
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=6.7e-32 Score=226.81 Aligned_cols=207 Identities=14% Similarity=0.137 Sum_probs=162.4
Q ss_pred ccEEEEccceEEccccc-----cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC--
Q 021362 75 IPVVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-- 147 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~-----~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~-- 147 (313)
|++++++|++|.|.... +...+++.|||++++|+.++|+|.||||||||.|+|+|+++ |++|+|.++|..
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~---PTsG~il~n~~~L~ 78 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGEILINDHPLH 78 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC---CCCceEEECCcccc
Confidence 56799999999996432 34558999999999999999999999999999999999999 999999999976
Q ss_pred ------CCCeEEEEecCCCCCCcccCCcccChHHHHHhcC-CCCCccHHHHHHHHHHhhc---CCCccCCCCCCcCCCcc
Q 021362 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPV 217 (313)
Q Consensus 148 ------~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~---~~~~~~~~LSgG~kqRv 217 (313)
+.+.|-++|||+...+++.+.+-+.+..+++... .......+++.+.|..+|+ ..+.++..||-||||||
T Consensus 79 ~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRV 158 (267)
T COG4167 79 FGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRV 158 (267)
T ss_pred ccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHH
Confidence 3456899999998777777777777777765432 2333345678888899984 34567779999999999
Q ss_pred hhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 218 EDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 218 ~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
++|+|+..++.++|.|+.+-.||- .+.....++.++ -|+|+.++..+.. .++ |.++++|.+.++.
T Consensus 159 aLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~ 238 (267)
T COG4167 159 ALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238 (267)
T ss_pred HHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhh
Confidence 997777777777777777777776 334444444333 3699999998876 444 9999999999986
Q ss_pred HH
Q 021362 283 KW 284 (313)
Q Consensus 283 ~~ 284 (313)
..
T Consensus 239 a~ 240 (267)
T COG4167 239 AS 240 (267)
T ss_pred cC
Confidence 54
No 271
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=1.8e-31 Score=267.04 Aligned_cols=196 Identities=14% Similarity=0.058 Sum_probs=154.6
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
++|+++|+++.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++|+|.+++. ..++|+
T Consensus 323 ~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~---~~i~~v 392 (556)
T PRK11819 323 KVIEAENLSKSFGDRL----LIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ---PDSGTIKIGET---VKLAYV 392 (556)
T ss_pred eEEEEEeEEEEECCee----eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCc---eEEEEE
Confidence 4799999999998766 9999999999999999999999999999999999999 99999998542 258999
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCceEEEE
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~ 232 (313)
+|+...++ +.+|+.+|+.+.....+... ......++++.++.. .++++.+||||||||++||++++.++++|++
T Consensus 393 ~q~~~~~~-~~~tv~e~l~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL 469 (556)
T PRK11819 393 DQSRDALD-PNKTVWEEISGGLDIIKVGN--REIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLL 469 (556)
T ss_pred eCchhhcC-CCCCHHHHHHhhcccccccc--cHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99852222 35899999987643222221 123455788888853 3667889999999999999999999999999
Q ss_pred cCCccccCh----hhHHHHHhhccceEEEEcChHHHHH---HHh-----hccc-ccCCchHHHHH
Q 021362 233 DGNYLFLDG----GVWKDVSSMFDEKWFIEVDLDTAMQ---RVL-----KRHI-STGKPPDVAKW 284 (313)
Q Consensus 233 d~~~lllDE----~~~~~l~~l~~~~i~vtHd~~~~~~---rv~-----griv-~~G~~~ev~~~ 284 (313)
|+|+..||. .+++.|.++....|+||||++++.. |++ |+++ ..|..++...+
T Consensus 470 DEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 470 DEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred cCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 999999999 4555555554445799999999877 544 3444 36766665544
No 272
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=8.6e-32 Score=234.32 Aligned_cols=155 Identities=12% Similarity=0.079 Sum_probs=127.0
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh--cccCCCCceeecCCCCC----CC
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVKP----PD 150 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~--~~~~p~~G~i~~~g~~~----~~ 150 (313)
.|+++|+++.|++..+...+|+++||++++|++++|+||||||||||+++|+|+. + |++|+|.++|.+. .+
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~~~G~i~~~g~~~~~~~~~ 79 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAG---VITGEILINGRPLDKNFQR 79 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CcceEEEECCEehHHHhhh
Confidence 5899999999975111123899999999999999999999999999999999975 4 7999999999763 35
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEE
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~L 230 (313)
.++|++|++..++ .+|+.+|+.+.... + +|||||+||++||++++.++++|
T Consensus 80 ~i~~~~q~~~~~~--~~tv~~~l~~~~~~----------------~-----------~LSgGe~qrv~la~al~~~p~vl 130 (192)
T cd03232 80 STGYVEQQDVHSP--NLTVREALRFSALL----------------R-----------GLSVEQRKRLTIGVELAAKPSIL 130 (192)
T ss_pred ceEEecccCcccc--CCcHHHHHHHHHHH----------------h-----------cCCHHHhHHHHHHHHHhcCCcEE
Confidence 6899999865443 47999998764211 0 89999999999999999999999
Q ss_pred EEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHH
Q 021362 231 IVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDT 263 (313)
Q Consensus 231 i~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~ 263 (313)
++|+|+..||. .+++.|+++.+ ..+++|||++.
T Consensus 131 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~ 170 (192)
T cd03232 131 FLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSA 170 (192)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChH
Confidence 99999999999 45555555543 24799999984
No 273
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-31 Score=259.73 Aligned_cols=193 Identities=14% Similarity=0.143 Sum_probs=159.5
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
-++.+|+++.|++.. ++++|+||++++|+.++|+|+||||||||+++|+|+.+ |++|+|.+||.+.
T Consensus 320 ei~~~~l~~~y~~g~---~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~---~~~G~I~vng~~l~~l~~~~~ 393 (559)
T COG4988 320 EISLENLSFRYPDGK---PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA---PTQGEIRVNGIDLRDLSPEAW 393 (559)
T ss_pred eeeecceEEecCCCC---cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCccccccCHHHH
Confidence 355679999998752 29999999999999999999999999999999999999 9999999999773
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--------CCCccCC----CCCCcCCCc
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--------QGSVYAP----SFDHGVGDP 216 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--------~~~~~~~----~LSgG~kqR 216 (313)
++.+++|+|+++.+. -|++||+.++. +. ...+.+.++++..+. +.+..+. .|||||+||
T Consensus 394 ~k~i~~v~Q~p~lf~---gTireNi~l~~-----~~-~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QR 464 (559)
T COG4988 394 RKQISWVSQNPYLFA---GTIRENILLAR-----PD-ASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQR 464 (559)
T ss_pred HhHeeeeCCCCcccc---ccHHHHhhccC-----Cc-CCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHH
Confidence 356999999987665 49999997652 22 235566777776651 2343344 599999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHHHH
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~~ 284 (313)
|++|||+..+++++++|||+.-||- .+.+.|.++.++ +++|||++..+.. +|+ ||+++.|.++++..+
T Consensus 465 laLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~ 544 (559)
T COG4988 465 LALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK 544 (559)
T ss_pred HHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc
Confidence 9999999999999999999999998 456666666654 4799999999998 655 999999999998654
No 274
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=8.5e-32 Score=230.54 Aligned_cols=146 Identities=21% Similarity=0.236 Sum_probs=125.4
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------CC
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PD 150 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------~~ 150 (313)
|+++|+++.|++.. +|+++||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+. ..
T Consensus 1 l~~~~l~~~~~~~~----~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (173)
T cd03230 1 IEVRNLSKRYGKKT----ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEPEEVKR 73 (173)
T ss_pred CEEEEEEEEECCee----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccchHhhhc
Confidence 46899999998655 9999999999999999999999999999999999999 9999999998653 24
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEE
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~L 230 (313)
.++|++|++..++ .+|+.+|+. ||+||+||++||++++.+++++
T Consensus 74 ~i~~~~q~~~~~~--~~tv~~~~~----------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 74 RIGYLPEEPSLYE--NLTVRENLK----------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred cEEEEecCCcccc--CCcHHHHhh----------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 5899999965433 367777763 9999999999999999999999
Q ss_pred EEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH
Q 021362 231 IVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 231 i~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
++|+|+..||. .+++.|+++.++ .+++|||++++..
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 99999999999 556666666433 4799999998764
No 275
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=5.4e-32 Score=279.94 Aligned_cols=195 Identities=14% Similarity=0.143 Sum_probs=156.6
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
.|+++||+++|..++ ++.+|+|+||.|++|+.++|+|||||||||++++|.+++. |++|+|.++|.+..
T Consensus 350 ~ief~nV~FsYPsRp-dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd---P~~G~V~idG~di~~~~~~~l 425 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRP-DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD---PTSGEVLIDGEDIRNLNLKWL 425 (1228)
T ss_pred ceEEEEEEecCCCCC-cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCceEEEcCccchhcchHHH
Confidence 599999999999875 6669999999999999999999999999999999999999 99999999998743
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCC----CccCCCCCCcCCC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQG----SVYAPSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~----~~~~~~LSgG~kq 215 (313)
..+|+|+|+|..+. .|++||+.++ .+.. ..+++.++++..+ .+. ...-.+|||||||
T Consensus 426 r~~iglV~QePvlF~---~tI~eNI~~G-----~~da-t~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQ 496 (1228)
T KOG0055|consen 426 RSQIGLVSQEPVLFA---TTIRENIRYG-----KPDA-TREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQ 496 (1228)
T ss_pred HhhcCeeeechhhhc---ccHHHHHhcC-----CCcc-cHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHH
Confidence 46999999985443 7999999764 3321 2334444433222 121 2234489999999
Q ss_pred cchhhhhhccCceEEEEcCCccccChhhHHHHHhhcc------ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~------~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||||++.+|++|++|+++..||.+--+.+.+..+ ..|+|+|++.++.. +++ |++++.|..+|++.
T Consensus 497 RIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 497 RIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred HHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHh
Confidence 9999999999999999999999999944444443333 25899999999998 544 99999999999976
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 577 ~ 577 (1228)
T KOG0055|consen 577 L 577 (1228)
T ss_pred c
Confidence 5
No 276
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.97 E-value=5.8e-32 Score=267.50 Aligned_cols=194 Identities=12% Similarity=0.078 Sum_probs=154.7
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
++|+++|+++ . +|+++||+|.+||+++|+||||||||||+++|+|+++ |++|+|.++|++..
T Consensus 256 ~~l~~~~l~~-----~----~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~---p~~G~I~~~g~~i~~~~~~~ 323 (501)
T PRK10762 256 VRLKVDNLSG-----P----GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP---RTSGYVTLDGHEVVTRSPQD 323 (501)
T ss_pred cEEEEeCccc-----C----CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCHHH
Confidence 4799999984 3 7999999999999999999999999999999999999 99999999986531
Q ss_pred ---CeEEEEecCCC--CCCcccCCcccChHHHHHh-c----C-CCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCC
Q 021362 150 ---DVATVLPMDGF--HLYLSQLDAMEDPKEAHAR-R----G-APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGD 215 (313)
Q Consensus 150 ---~~i~~v~qd~~--~~~~~~ltv~e~~~~~~~~-~----~-~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kq 215 (313)
..++|++|++. .++ +.+|+.+|+.+.... . + .......+++.++++.++.. .++++.+|||||||
T Consensus 324 ~~~~~i~~v~q~~~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekq 402 (501)
T PRK10762 324 GLANGIVYISEDRKRDGLV-LGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQ 402 (501)
T ss_pred HHHCCCEEecCccccCCCc-CCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHH
Confidence 34899999952 222 248999999874321 1 1 11112245678888988852 46677899999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev 281 (313)
|++||++++.++++|++|+|+..||. .+++.|+++.++ .|++|||++++.. |++ |+++..|+++++
T Consensus 403 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 403 KVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 99999999999999999999999999 556666666442 4799999999987 554 888888887766
Q ss_pred H
Q 021362 282 A 282 (313)
Q Consensus 282 ~ 282 (313)
.
T Consensus 483 ~ 483 (501)
T PRK10762 483 T 483 (501)
T ss_pred C
Confidence 3
No 277
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.97 E-value=1.4e-31 Score=230.98 Aligned_cols=149 Identities=19% Similarity=0.194 Sum_probs=124.7
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
+|+++|+++.| +|+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~--------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 72 (182)
T cd03215 4 VLEVRGLSVKG--------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP---PASGEITLDGKPVTRRSPRDA 72 (182)
T ss_pred EEEEeccEEEe--------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccCHHHH
Confidence 69999999998 6899999999999999999999999999999999999 9999999999653
Q ss_pred -CCeEEEEecCCC-CCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccC
Q 021362 149 -PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 -~~~i~~v~qd~~-~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
.+.++|++|+.. ....+.+|+.||+.+... ||+||+||++||++++.+
T Consensus 73 ~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------LS~G~~qrl~la~al~~~ 122 (182)
T cd03215 73 IRAGIAYVPEDRKREGLVLDLSVAENIALSSL------------------------------LSGGNQQKVVLARWLARD 122 (182)
T ss_pred HhCCeEEecCCcccCcccCCCcHHHHHHHHhh------------------------------cCHHHHHHHHHHHHHccC
Confidence 235899999842 112224788888765421 999999999999999999
Q ss_pred ceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH
Q 021362 227 HKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 227 ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
+++|++|+|+..||. .+++.|+++.+ ..+++|||++++..
T Consensus 123 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 169 (182)
T cd03215 123 PRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLG 169 (182)
T ss_pred CCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 999999999999999 45555555533 24799999988765
No 278
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.97 E-value=1.7e-31 Score=227.24 Aligned_cols=146 Identities=13% Similarity=0.021 Sum_probs=123.3
Q ss_pred EEEccceEEccc-cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEe
Q 021362 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 78 l~~~~l~~~y~~-~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~ 156 (313)
|+++|+++.|++ .. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|. +.++|++
T Consensus 1 i~~~~~~~~~~~~~~----~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~---~~i~~~~ 70 (166)
T cd03223 1 IELENLSLATPDGRV----LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP---WGSGRIGMPEG---EDLLFLP 70 (166)
T ss_pred CEEEEEEEEcCCCCe----eeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCC---ceEEEEC
Confidence 468999999964 34 8999999999999999999999999999999999999 99999999874 5699999
Q ss_pred cCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCc
Q 021362 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (313)
Q Consensus 157 qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~ 236 (313)
|++.. + ..|+.||+.+. ...+||+||+||+++|++++.+++++++|+|+
T Consensus 71 q~~~~-~--~~tv~~nl~~~----------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt 119 (166)
T cd03223 71 QRPYL-P--LGTLREQLIYP----------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEAT 119 (166)
T ss_pred CCCcc-c--cccHHHHhhcc----------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 99653 3 36888887542 34699999999999999999999999999999
Q ss_pred cccChhh----HHHHHhhccceEEEEcChHHH
Q 021362 237 LFLDGGV----WKDVSSMFDEKWFIEVDLDTA 264 (313)
Q Consensus 237 lllDE~~----~~~l~~l~~~~i~vtHd~~~~ 264 (313)
..||... .+.|.++....+++|||++..
T Consensus 120 ~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~ 151 (166)
T cd03223 120 SALDEESEDRLYQLLKELGITVISVGHRPSLW 151 (166)
T ss_pred cccCHHHHHHHHHHHHHhCCEEEEEeCChhHH
Confidence 9999944 444444433357999998764
No 279
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.97 E-value=1.2e-31 Score=270.18 Aligned_cols=191 Identities=13% Similarity=0.121 Sum_probs=155.8
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
-|+++|+++.|++. ..+|+|+||++++||.++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 340 ~i~~~~v~f~y~~~---~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~l 413 (592)
T PRK10790 340 RIDIDNVSFAYRDD---NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP---LTEGEIRLDGRPLSSLSHSVL 413 (592)
T ss_pred eEEEEEEEEEeCCC---CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEhhhCCHHHH
Confidence 48999999999742 139999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCCc----cCCCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~~----~~~~LSgG~kq 215 (313)
++.++|++||++.+. -|+++|+.++. ..+.+++.++++.++. +.+. ....|||||||
T Consensus 414 ~~~i~~v~Q~~~lF~---~Ti~~NI~~~~-------~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQ 483 (592)
T PRK10790 414 RQGVAMVQQDPVVLA---DTFLANVTLGR-------DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQ 483 (592)
T ss_pred HhheEEEccCCcccc---chHHHHHHhCC-------CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHH
Confidence 356999999977654 49999997742 1234556666666551 2222 23479999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||||++.++++|++|+|+.-||+ .+.+.|.++.. ..|+|||+++.... +++ |++++.|+.+++.+
T Consensus 484 RialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 484 LLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999 45555555533 35799999988877 665 99999999999864
No 280
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1e-31 Score=231.05 Aligned_cols=148 Identities=21% Similarity=0.227 Sum_probs=125.0
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 148 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--------- 148 (313)
|+++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 i~~~~l~~~~~~~~----~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (178)
T cd03229 1 LELKNVSKRYGQKT----VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE---PDSGSILIDGEDLTDLEDELPP 73 (178)
T ss_pred CEEEEEEEEECCeE----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccchhHHH
Confidence 46899999998765 9999999999999999999999999999999999998 9999999998542
Q ss_pred -CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCc
Q 021362 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 149 -~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~a 227 (313)
.+.++|++|++..+. .+|+.||+.+. ||+||+||++||++++.++
T Consensus 74 ~~~~i~~~~q~~~~~~--~~t~~~~l~~~--------------------------------lS~G~~qr~~la~al~~~p 119 (178)
T cd03229 74 LRRRIGMVFQDFALFP--HLTVLENIALG--------------------------------LSGGQQQRVALARALAMDP 119 (178)
T ss_pred HhhcEEEEecCCccCC--CCCHHHheeec--------------------------------CCHHHHHHHHHHHHHHCCC
Confidence 235899999865433 36887776432 9999999999999999999
Q ss_pred eEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH
Q 021362 228 KVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ 266 (313)
Q Consensus 228 r~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~ 266 (313)
+++++|+|+..||. .+++.|+++.++ .+++|||++++..
T Consensus 120 ~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 166 (178)
T cd03229 120 DVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAAR 166 (178)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 99999999999999 455555555432 3699999998764
No 281
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.97 E-value=1.3e-31 Score=275.00 Aligned_cols=195 Identities=15% Similarity=0.120 Sum_probs=155.9
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
.|+++||++.|++.. +..+|+|+||+|++||.++|+||||||||||+++|.|+++ |++|+|.++|++.
T Consensus 478 ~I~~~nVsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~l 553 (711)
T TIGR00958 478 LIEFQDVSFSYPNRP-DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ---PTGGQVLLDGVPLVQYDHHYL 553 (711)
T ss_pred eEEEEEEEEECCCCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhcCHHHH
Confidence 599999999997532 1239999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCc----cCCCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~LSgG~kq 215 (313)
.+.++|++|+++.+. .|++||+.++. +. ...+++.++++..+ .+.+. ...+|||||||
T Consensus 554 r~~i~~v~Q~~~lF~---gTIreNI~~g~-----~~-~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQ 624 (711)
T TIGR00958 554 HRQVALVGQEPVLFS---GSVRENIAYGL-----TD-TPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQ 624 (711)
T ss_pred HhhceEEecCccccc---cCHHHHHhcCC-----CC-CCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHH
Confidence 346999999987654 59999997642 21 22445555555544 12222 23489999999
Q ss_pred cchhhhhhccCceEEEEcCCccccChhhHHHHHhhc---c-ceEEEEcChHHHHH--HHh----hcccccCCchHHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF---D-EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~---~-~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~~ 284 (313)
|++||||+.++++++++|+++.-||.+..+.+.+.. + ..|+|||+++.+.. +++ |++++.|+.+|+.+.
T Consensus 625 RlalARALl~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~ 703 (711)
T TIGR00958 625 RIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMED 703 (711)
T ss_pred HHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhC
Confidence 999999999999999999999999996655555422 1 24799999998877 655 999999999998654
No 282
>PLN03211 ABC transporter G-25; Provisional
Probab=99.97 E-value=1.7e-31 Score=270.91 Aligned_cols=195 Identities=17% Similarity=0.147 Sum_probs=156.4
Q ss_pred EEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC--CceeecCCCCC----CCeE
Q 021362 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--KASSFDSQVKP----PDVA 152 (313)
Q Consensus 79 ~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~--~G~i~~~g~~~----~~~i 152 (313)
.++|+++.|+++. +|+|+||++++||+++|+||||||||||+++|+|+++ |+ +|+|.++|++. .+.+
T Consensus 70 ~~~~l~~~~~~~~----iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~---~~~~sG~I~inG~~~~~~~~~~i 142 (659)
T PLN03211 70 KISDETRQIQERT----ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQ---GNNFTGTILANNRKPTKQILKRT 142 (659)
T ss_pred ccccccccCCCCe----eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEEEECCEECchhhccce
Confidence 3567888998776 9999999999999999999999999999999999997 75 89999999753 3458
Q ss_pred EEEecCCCCCCcccCCcccChHHHHHhcCCCC----CccHHHHHHHHHHhhcCC-------CccCCCCCCcCCCcchhhh
Q 021362 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW----TFNPLLLLNCLKNLRNQG-------SVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 153 ~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~----~~~~~~~~~~l~~l~~~~-------~~~~~~LSgG~kqRv~ia~ 221 (313)
+|++|++..+. .+|++||+.+....+ .+. ++..+++.++++.++... +.....||||||||++||+
T Consensus 143 ~yv~Q~~~l~~--~lTV~E~l~~~a~~~-~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~ 219 (659)
T PLN03211 143 GFVTQDDILYP--HLTVRETLVFCSLLR-LPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAH 219 (659)
T ss_pred EEECcccccCC--cCCHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHH
Confidence 99999976544 489999999875433 221 123345778888887432 3346689999999999999
Q ss_pred hhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHH-HHH---HHh----hcccccCCchHHHH
Q 021362 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDT-AMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~-~~~---rv~----griv~~G~~~ev~~ 283 (313)
+++.++++|++|+|+..||. .+.+.|+++.++ +++++|+++. +.. +++ |+++..|+++++..
T Consensus 220 aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 220 EMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred HHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 99999999999999999999 566666665432 4799999974 443 554 99999999988754
No 283
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.97 E-value=1.4e-31 Score=274.93 Aligned_cols=193 Identities=15% Similarity=0.135 Sum_probs=154.5
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
-|+++|+++.|+.. ..+|+|+||+|++|+.++|+||||||||||+++|+|++. |++|+|.++|.+.
T Consensus 473 ~I~~~~vsf~y~~~---~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l 546 (708)
T TIGR01193 473 DIVINDVSYSYGYG---SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ---ARSGEILLNGFSLKDIDRHTL 546 (708)
T ss_pred cEEEEEEEEEcCCC---CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCCcEEEECCEEHHHcCHHHH
Confidence 49999999999742 139999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCc----cCCCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~LSgG~kq 215 (313)
++.++|++|+++.+. -|++||+.++.. + ..+.+++.++++..+ .+.+. ....|||||||
T Consensus 547 r~~i~~v~Q~~~lf~---gTI~eNi~l~~~----~-~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQ 618 (708)
T TIGR01193 547 RQFINYLPQEPYIFS---GSILENLLLGAK----E-NVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQ 618 (708)
T ss_pred HHheEEEecCceehh---HHHHHHHhccCC----C-CCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHH
Confidence 346999999977554 499999976421 1 223445555555443 12222 23489999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc-eEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE-KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~-~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||||+..++++|++|+++.-||. .+.+.|.++.+. .|+|||+++.+.. |++ |++++.|+.+++..
T Consensus 619 RialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 619 RIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred HHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999 455556554323 4799999998876 665 99999999988865
No 284
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.97 E-value=1.3e-31 Score=229.41 Aligned_cols=145 Identities=16% Similarity=0.166 Sum_probs=121.8
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------C
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------P 149 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--------~ 149 (313)
|+++|+++.|++.. ..+++++||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 1 i~~~~l~~~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 75 (173)
T cd03246 1 LEVENVSFRYPGAE--PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR---PTSGRVRLDGADISQWDPNELG 75 (173)
T ss_pred CEEEEEEEEcCCCC--CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEEcccCCHHHHH
Confidence 46899999997521 228999999999999999999999999999999999999 9999999998653 2
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceE
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~ 229 (313)
..++|++|++.. +. .|+.||+ |||||+||++||++++.++++
T Consensus 76 ~~i~~~~q~~~~-~~--~tv~~~l-----------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 76 DHVGYLPQDDEL-FS--GSIAENI-----------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred hheEEECCCCcc-cc--CcHHHHC-----------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 458999998643 32 3777765 999999999999999999999
Q ss_pred EEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHH
Q 021362 230 VIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAM 265 (313)
Q Consensus 230 Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~ 265 (313)
|++|+|+..||. .+++.|+++.+ ..+++|||++++.
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 999999999999 45555555543 2479999998763
No 285
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=7.3e-32 Score=266.79 Aligned_cols=198 Identities=13% Similarity=0.106 Sum_probs=154.9
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
+++++++++.. . +++|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|++..
T Consensus 256 ~~l~~~~~~~~----~----~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~---p~~G~i~~~g~~~~~~~~~~ 324 (501)
T PRK11288 256 VRLRLDGLKGP----G----LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR---RTAGQVYLDGKPIDIRSPRD 324 (501)
T ss_pred cEEEEeccccC----C----cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc---CCCceEEECCEECCCCCHHH
Confidence 36899999732 3 8999999999999999999999999999999999999 99999999986532
Q ss_pred ---CeEEEEecCCC--CCCcccCCcccChHHHHHhcCC------CCCccHHHHHHHHHHhhc---CCCccCCCCCCcCCC
Q 021362 150 ---DVATVLPMDGF--HLYLSQLDAMEDPKEAHARRGA------PWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGD 215 (313)
Q Consensus 150 ---~~i~~v~qd~~--~~~~~~ltv~e~~~~~~~~~~~------~~~~~~~~~~~~l~~l~~---~~~~~~~~LSgG~kq 215 (313)
..++|++|++. .++ +.+|+.||+.+....... ......+.+.++++.++. ..++++.+|||||||
T Consensus 325 ~~~~~i~~~~q~~~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~q 403 (501)
T PRK11288 325 AIRAGIMLCPEDRKAEGII-PVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQ 403 (501)
T ss_pred HHhCCCEEcCcCHhhCCCc-CCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHH
Confidence 35899999852 122 248999998764321110 111223457788888885 246678899999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev 281 (313)
|++||++++.++++|++|+|+..||. .+++.|.++.+. .|++|||++++.. |++ |++++.|.+++.
T Consensus 404 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 404 KAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred HHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccC
Confidence 99999999999999999999999999 445555555433 4799999999987 554 899998888776
Q ss_pred HHHH
Q 021362 282 AKWR 285 (313)
Q Consensus 282 ~~~~ 285 (313)
....
T Consensus 484 ~~~~ 487 (501)
T PRK11288 484 TERQ 487 (501)
T ss_pred CHHH
Confidence 5443
No 286
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1.5e-31 Score=236.97 Aligned_cols=206 Identities=16% Similarity=0.097 Sum_probs=161.6
Q ss_pred cEEEEccceEEcccc-----------------ccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCC
Q 021362 76 PVVEARCMDEVYDAL-----------------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK 138 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~-----------------~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~ 138 (313)
.++.++||+|.|.-. ..-+.++.|+||+|++|+++|++|||||||||++|+|+|++. |++
T Consensus 2 ~~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~---p~~ 78 (325)
T COG4586 2 AMIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL---PTS 78 (325)
T ss_pred ceeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc---cCC
Confidence 367888888887321 112558999999999999999999999999999999999999 999
Q ss_pred ceeecCCCCCCC-------eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCC
Q 021362 139 ASSFDSQVKPPD-------VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSF 209 (313)
Q Consensus 139 G~i~~~g~~~~~-------~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~L 209 (313)
|.|.++|.++.+ .+++++-.-..+.. .+.+.+.+......+..|...-.++...+.+.++.. .+.++..|
T Consensus 79 G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~W-dlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~L 157 (325)
T COG4586 79 GKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWW-DLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKL 157 (325)
T ss_pred CeEEecCcCcchhHHHHHHHHHHHhhhhheeee-echhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhc
Confidence 999999987543 24444333122222 255677777666778788776677778888888755 56677899
Q ss_pred CCcCCCcchhhhhhccCceEEEEcCCccccChh----hHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccc
Q 021362 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHIS 274 (313)
Q Consensus 210 SgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~----~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~ 274 (313)
|-|||.|+.+|++|.+++++|.+|++++.||-. +.+.+++...+ +++.||+++.+.. |++ |+++.
T Consensus 158 SlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~ 237 (325)
T COG4586 158 SLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVF 237 (325)
T ss_pred cchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEee
Confidence 999999999999999999999999999999994 44444444332 4699999999988 666 99999
Q ss_pred cCCchHHHHHH
Q 021362 275 TGKPPDVAKWR 285 (313)
Q Consensus 275 ~G~~~ev~~~~ 285 (313)
+|+..++.+++
T Consensus 238 dg~l~~l~~~f 248 (325)
T COG4586 238 DGTLAQLQEQF 248 (325)
T ss_pred cccHHHHHHHh
Confidence 99998887653
No 287
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.97 E-value=1.7e-31 Score=273.78 Aligned_cols=194 Identities=15% Similarity=0.125 Sum_probs=156.0
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
-|+++|++++|++. ...+|+|+||+|++||.++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 463 ~I~~~~vsf~Y~~~--~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~l~~~~~~~l 537 (694)
T TIGR03375 463 EIEFRNVSFAYPGQ--ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ---PTEGSVLLDGVDIRQIDPADL 537 (694)
T ss_pred eEEEEEEEEEeCCC--CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCCHHHH
Confidence 49999999999642 1238999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCc----cCCCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~LSgG~kq 215 (313)
++.++||+|+++.+. -|++||+.+. .+ ..+.+++.++++..+ .+.+. ....|||||||
T Consensus 538 r~~i~~v~Q~~~lf~---~TI~eNi~~~-----~~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQ 608 (694)
T TIGR03375 538 RRNIGYVPQDPRLFY---GTLRDNIALG-----AP-YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQ 608 (694)
T ss_pred HhccEEECCChhhhh---hhHHHHHhCC-----CC-CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHH
Confidence 346999999976554 5999999764 12 123455555555544 12222 23489999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||||+..+++++++|+++.-||+ .+.+.|.++.+ ..++|||+++.+.. |++ |++++.|+.+++.+
T Consensus 609 RlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 609 AVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 99999999999999999999999999 45555665543 35799999998876 655 99999999988865
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 689 ~ 689 (694)
T TIGR03375 689 A 689 (694)
T ss_pred H
Confidence 4
No 288
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.97 E-value=3.4e-31 Score=240.66 Aligned_cols=194 Identities=13% Similarity=0.081 Sum_probs=146.5
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
...|+++|+++.|++. ...+|+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 17 ~~~i~~~~l~~~~~~~--~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~~~~ 91 (257)
T cd03288 17 GGEIKIHDLCVRYENN--LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD---IFDGKIVIDGIDISKLPLH 91 (257)
T ss_pred CceEEEEEEEEEeCCC--CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC---CCCCeEEECCEEhhhCCHH
Confidence 3479999999999752 1129999999999999999999999999999999999998 9999999999653
Q ss_pred --CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh-------------cCCCccCCCCCCcC
Q 021362 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR-------------NQGSVYAPSFDHGV 213 (313)
Q Consensus 149 --~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------------~~~~~~~~~LSgG~ 213 (313)
.+.++|++|++.. +. .|+.+|+.... ......+.++++.++ ...+....+||+||
T Consensus 92 ~~~~~i~~v~q~~~l-~~--~tv~~nl~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~ 161 (257)
T cd03288 92 TLRSRLSIILQDPIL-FS--GSIRFNLDPEC-------KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQ 161 (257)
T ss_pred HHhhhEEEECCCCcc-cc--cHHHHhcCcCC-------CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHH
Confidence 2358999999643 33 48887764210 111222222222221 11223456999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccChh----hHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHH
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 281 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev 281 (313)
+||++||++++.++++|++|+|+..||.. +++.+.++.. ..+++||+++++.. |++ |++++.|+++++
T Consensus 162 ~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~ 241 (257)
T cd03288 162 RQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENL 241 (257)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999994 4444444322 24699999999877 554 899999988877
Q ss_pred HH
Q 021362 282 AK 283 (313)
Q Consensus 282 ~~ 283 (313)
..
T Consensus 242 ~~ 243 (257)
T cd03288 242 LA 243 (257)
T ss_pred Hh
Confidence 54
No 289
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.97 E-value=1.4e-31 Score=234.34 Aligned_cols=166 Identities=16% Similarity=0.085 Sum_probs=132.3
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHH--hcccCCCCceeecCCCCCC------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl--~~~~~p~~G~i~~~g~~~~------ 149 (313)
|+++|+++.|++.. +|+|+||++++||+++|+|+||||||||+++|+|+ +. |++|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---p~~G~i~~~g~~~~~~~~~~ 73 (200)
T cd03217 1 LEIKDLHVSVGGKE----ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYE---VTEGEILFKGEDITDLPPEE 73 (200)
T ss_pred CeEEEEEEEeCCEE----eeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CCccEEEECCEECCcCCHHH
Confidence 46899999998655 99999999999999999999999999999999999 46 99999999996531
Q ss_pred ---CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccC
Q 021362 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 150 ---~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
..++|++|++..+. .+++.+++ +....+||+||+||+++|++++.+
T Consensus 74 ~~~~~i~~v~q~~~~~~--~~~~~~~l-----------------------------~~~~~~LS~G~~qrv~laral~~~ 122 (200)
T cd03217 74 RARLGIFLAFQYPPEIP--GVKNADFL-----------------------------RYVNEGFSGGEKKRNEILQLLLLE 122 (200)
T ss_pred HhhCcEEEeecChhhcc--CccHHHHH-----------------------------hhccccCCHHHHHHHHHHHHHhcC
Confidence 23899999854332 23443332 112248999999999999999999
Q ss_pred ceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHH--H--HHh----hcccccCCchHHH
Q 021362 227 HKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAM--Q--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 227 ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~--~--rv~----griv~~G~~~ev~ 282 (313)
++++++|+|+..||. .+++.|.++.+ ..+++||+++.+. . |++ |++++.| +.++.
T Consensus 123 p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 123 PDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 999999999999998 56666666643 2479999999887 3 443 8888888 44554
No 290
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.97 E-value=1e-31 Score=265.07 Aligned_cols=185 Identities=16% Similarity=0.012 Sum_probs=141.5
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-CCceeecCCCCC-----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFDSQVKP----- 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-~~G~i~~~g~~~----- 148 (313)
.++|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+.+ | ++|+|+++|.+.
T Consensus 258 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~---~~~~G~i~~~g~~~~~~~~ 330 (490)
T PRK10938 258 EPRIVLNNGVVSYNDRP----ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP---QGYSNDLTLFGRRRGSGET 330 (490)
T ss_pred CceEEEeceEEEECCee----EEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---cccCCeEEEecccCCCCCC
Confidence 35899999999998766 9999999999999999999999999999999999875 5 699999998642
Q ss_pred ----CCeEEEEecCCCCCCcccCCcccChHHHHHh----cCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcc
Q 021362 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPV 217 (313)
Q Consensus 149 ----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~----~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv 217 (313)
...++|++|+.........++.+++.+.... +........+++.++++.++.. .+.++.+||||||||+
T Consensus 331 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv 410 (490)
T PRK10938 331 IWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLA 410 (490)
T ss_pred HHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHH
Confidence 1348999998543222123555554332111 1111112235678888888843 4567779999999999
Q ss_pred hhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH
Q 021362 218 EDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ 266 (313)
Q Consensus 218 ~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~ 266 (313)
+||++++.++++|++|+|+..||. .+++.|.++.++ .|++|||++++..
T Consensus 411 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~ 467 (490)
T PRK10938 411 LIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPA 467 (490)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhh
Confidence 999999999999999999999999 555556565432 4799999998864
No 291
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.97 E-value=1.8e-31 Score=267.97 Aligned_cols=194 Identities=15% Similarity=0.118 Sum_probs=156.7
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
.|+++|+++.|++.. ..+|+|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 338 ~i~~~~v~f~y~~~~--~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---p~~G~I~i~g~~i~~~~~~~~ 412 (574)
T PRK11160 338 SLTLNNVSFTYPDQP--QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD---PQQGEILLNGQPIADYSEAAL 412 (574)
T ss_pred eEEEEEEEEECCCCC--CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCCHHHH
Confidence 599999999996521 138999999999999999999999999999999999999 99999999997633
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--------CCc----cCCCCCCcCCCc
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--------GSV----YAPSFDHGVGDP 216 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--------~~~----~~~~LSgG~kqR 216 (313)
+.++|++|+++.+. -|++||+.++. + ....+.+.++++.++.. .+. ....||||||||
T Consensus 413 r~~i~~v~Q~~~lf~---~ti~~Ni~~~~-----~-~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqR 483 (574)
T PRK11160 413 RQAISVVSQRVHLFS---ATLRDNLLLAA-----P-NASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRR 483 (574)
T ss_pred HhheeEEcccchhhc---ccHHHHhhcCC-----C-ccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHH
Confidence 45999999976544 49999997642 2 23455667777776621 112 334799999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHHH
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~~ 284 (313)
++|||+++.++++|++|+++.-+|+ .+.+.|.++.+ ..++|+|+++.+.. +++ |++++.|+.+|+.+.
T Consensus 484 ialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 563 (574)
T PRK11160 484 LGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQ 563 (574)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhc
Confidence 9999999999999999999999999 45555555543 24799999999877 555 999999999888653
No 292
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.4e-31 Score=267.71 Aligned_cols=192 Identities=14% Similarity=0.082 Sum_probs=151.1
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
++|+++||++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++|+|.+++. ..++|+
T Consensus 311 ~~l~~~~l~~~y~~~~----il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~~~~---~~igy~ 380 (638)
T PRK10636 311 PLLKMEKVSAGYGDRI----ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA---PVSGEIGLAKG---IKLGYF 380 (638)
T ss_pred ceEEEEeeEEEeCCee----eeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCC---EEEEEe
Confidence 4799999999998766 9999999999999999999999999999999999999 99999998642 368999
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCceEEEE
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~ 232 (313)
+|+.........++.+++.. .........+.++|+.++.. .++++.+|||||||||+||++++.++.+|++
T Consensus 381 ~Q~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlL 454 (638)
T PRK10636 381 AQHQLEFLRADESPLQHLAR------LAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLL 454 (638)
T ss_pred cCcchhhCCccchHHHHHHH------hCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99742212222344443321 11122345678889988853 3567889999999999999999999999999
Q ss_pred cCCccccCh----hhHHHHHhhccceEEEEcChHHHHH---HHh----hccc-ccCCchHHHH
Q 021362 233 DGNYLFLDG----GVWKDVSSMFDEKWFIEVDLDTAMQ---RVL----KRHI-STGKPPDVAK 283 (313)
Q Consensus 233 d~~~lllDE----~~~~~l~~l~~~~i~vtHd~~~~~~---rv~----griv-~~G~~~ev~~ 283 (313)
|+|+..||. .+.+.|.++...+|+||||++++.. |++ |+++ ..|..++...
T Consensus 455 DEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 455 DEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 999999999 4444555543335799999999876 555 8887 6788888743
No 293
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=5.9e-31 Score=230.94 Aligned_cols=171 Identities=12% Similarity=0.105 Sum_probs=131.0
Q ss_pred EEEccceEEcccccc-ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEe
Q 021362 78 VEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 78 l~~~~l~~~y~~~~~-~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~ 156 (313)
|+++||++.|++..+ ...+|+++||+|++|++++|+||||||||||+++|+|+.+ |++|+|.++| .++|++
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~---~~~G~i~~~g-----~i~~~~ 72 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG-----SIAYVS 72 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCCeEEEcC-----EEEEEe
Confidence 478999999976310 0139999999999999999999999999999999999999 9999999998 699999
Q ss_pred cCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHH------hhc-------CCCccCCCCCCcCCCcchhhhhh
Q 021362 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN------LRN-------QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 157 qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~------l~~-------~~~~~~~~LSgG~kqRv~ia~al 223 (313)
|++..+ . .|+.||+.+.... ..+...+.++. ++. ..+....+||+||+||++||+++
T Consensus 73 q~~~l~-~--~t~~enl~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral 142 (204)
T cd03250 73 QEPWIQ-N--GTIRENILFGKPF-------DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAV 142 (204)
T ss_pred cCchhc-c--CcHHHHhccCCCc-------CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence 997543 3 6999998764211 11222222222 221 12345669999999999999999
Q ss_pred ccCceEEEEcCCccccChhhHHHH-----Hhhccc---eEEEEcChHHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDGGVWKDV-----SSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE~~~~~l-----~~l~~~---~i~vtHd~~~~~~ 266 (313)
+.+++++++|+|+..||....+.+ .++.+. .|++||+++.+..
T Consensus 143 ~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~ 193 (204)
T cd03250 143 YSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH 193 (204)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh
Confidence 999999999999999999443333 333232 3799999988765
No 294
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=1.2e-30 Score=264.60 Aligned_cols=196 Identities=14% Similarity=0.019 Sum_probs=148.4
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEE
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~ 154 (313)
|.||+++||++.|++.. +|+|+||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|. ..+++
T Consensus 1 m~~l~i~~ls~~~~~~~----il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~---p~~G~I~~~~~---~~~~~ 70 (635)
T PRK11147 1 MSLISIHGAWLSFSDAP----LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL---LDDGRIIYEQD---LIVAR 70 (635)
T ss_pred CcEEEEeeEEEEeCCce----eEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEeCCC---CEEEE
Confidence 45899999999998766 9999999999999999999999999999999999999 99999999763 23677
Q ss_pred EecCCCCCCcccCCcccChH------------------------------HHHHh---c-CCCCCccHHHHHHHHHHhhc
Q 021362 155 LPMDGFHLYLSQLDAMEDPK------------------------------EAHAR---R-GAPWTFNPLLLLNCLKNLRN 200 (313)
Q Consensus 155 v~qd~~~~~~~~ltv~e~~~------------------------------~~~~~---~-~~~~~~~~~~~~~~l~~l~~ 200 (313)
++|++... ...++.+++. ..... . .........++.++++.++.
T Consensus 71 l~q~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 148 (635)
T PRK11147 71 LQQDPPRN--VEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGL 148 (635)
T ss_pred eccCCCCC--CCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCC
Confidence 87764211 1123443321 10000 0 00111234567888888886
Q ss_pred CCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhh----HHHHHhhccceEEEEcChHHHHH---HHh----
Q 021362 201 QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFDEKWFIEVDLDTAMQ---RVL---- 269 (313)
Q Consensus 201 ~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~----~~~l~~l~~~~i~vtHd~~~~~~---rv~---- 269 (313)
..++++.+|||||||||+||++++.++++|++|+|+..||... .+.|.++...+|+||||.+++.. +++
T Consensus 149 ~~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~ 228 (635)
T PRK11147 149 DPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDR 228 (635)
T ss_pred CCCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEEC
Confidence 6677888999999999999999999999999999999999944 44444443345799999999876 555
Q ss_pred hcccc-cCCchHHH
Q 021362 270 KRHIS-TGKPPDVA 282 (313)
Q Consensus 270 griv~-~G~~~ev~ 282 (313)
|+++. .|...+..
T Consensus 229 G~i~~~~g~~~~~~ 242 (635)
T PRK11147 229 GKLVSYPGNYDQYL 242 (635)
T ss_pred CEEEEecCCHHHHH
Confidence 88874 57766544
No 295
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.97 E-value=4.6e-31 Score=265.85 Aligned_cols=192 Identities=17% Similarity=0.166 Sum_probs=153.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
.|+++|+++.|++.. .+|+|+||++++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 334 ~I~~~~vsf~y~~~~---~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---p~~G~I~i~g~~i~~~~~~~~ 407 (588)
T PRK13657 334 AVEFDDVSFSYDNSR---QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD---PQSGRILIDGTDIRTVTRASL 407 (588)
T ss_pred eEEEEEEEEEeCCCC---ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEhhhCCHHHH
Confidence 499999999997521 28999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCc----cCCCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~LSgG~kq 215 (313)
++.++|++|+++.+. -|++||+.++ .+. ...+++.++++.++ .+.+. ....|||||||
T Consensus 408 r~~i~~v~Q~~~lf~---~Ti~~Ni~~~-----~~~-~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~Q 478 (588)
T PRK13657 408 RRNIAVVFQDAGLFN---RSIEDNIRVG-----RPD-ATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQ 478 (588)
T ss_pred HhheEEEecCccccc---ccHHHHHhcC-----CCC-CCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHH
Confidence 346999999976554 5999999764 121 22344555555443 12222 23379999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++|||+++.+++++++|+++.-||+ .+.+.|.++.+ ..|+|||+++.+.. |++ |++++.|+.+++..
T Consensus 479 RialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~ 558 (588)
T PRK13657 479 RLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVA 558 (588)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999999999999999 45555665533 35799999998876 655 89999999888753
No 296
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.97 E-value=4.5e-31 Score=235.00 Aligned_cols=179 Identities=19% Similarity=0.223 Sum_probs=140.1
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---CCeEEEEecCCCCCCcccCCcccChHHHHH
Q 021362 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (313)
Q Consensus 102 l~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~---~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~ 178 (313)
|+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.++|++|++...+...+|+.+|+.+...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP---PAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 5789999999999999999999999999999 9999999999763 346999999965433223789999876432
Q ss_pred hc-C---CCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHH
Q 021362 179 RR-G---APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVS 248 (313)
Q Consensus 179 ~~-~---~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~ 248 (313)
.. + .+.....+++.++++.++.. .+.++.+||+|||||++||++++.+++++++|+|+..||. .+.+.|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~ 157 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFI 157 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 11 1 11122345677888888843 4567779999999999999999999999999999999999 4555555
Q ss_pred hhccc---eEEEEcChHHHHH---HHh---hcccccCCchHHHH
Q 021362 249 SMFDE---KWFIEVDLDTAMQ---RVL---KRHISTGKPPDVAK 283 (313)
Q Consensus 249 ~l~~~---~i~vtHd~~~~~~---rv~---griv~~G~~~ev~~ 283 (313)
++.++ .|++|||++++.. +++ |+++..|+++++..
T Consensus 158 ~~~~~~~tvii~sH~~~~~~~~~d~i~~l~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 158 ELAGAGTAILMTTHDLAQAMATCDRVVLLNGRVIADGTPQQLQD 201 (223)
T ss_pred HHHHcCCEEEEEeCCHHHHHHhCCEEEEECCEEEeecCHHHhcC
Confidence 55432 4799999998876 444 88888888877643
No 297
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.6e-31 Score=251.15 Aligned_cols=191 Identities=14% Similarity=0.100 Sum_probs=156.3
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
.|+++||++.|+.+. ++|+++||+|++||-|||+|+|||||||++|+|.+++ -++|+|+++|++.
T Consensus 351 ~I~F~dV~f~y~~k~---~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~----d~sG~I~IdG~dik~~~~~Sl 423 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKR---KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF----DYSGSILIDGQDIKEVSLESL 423 (591)
T ss_pred cEEEEeeEEEeCCCC---ceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh----ccCCcEEECCeeHhhhChHHh
Confidence 499999999998654 3999999999999999999999999999999999999 6999999999873
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---------C----CCccCCCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------Q----GSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~----~~~~~~~LSgG~kq 215 (313)
++.|||||||...+. -|++.|+.++ .+.. ..+++.+.+++.+. + ...+...|||||||
T Consensus 424 R~~Ig~VPQd~~LFn---dTIl~NI~YG-----n~sa-s~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQ 494 (591)
T KOG0057|consen 424 RQSIGVVPQDSVLFN---DTILYNIKYG-----NPSA-SDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQ 494 (591)
T ss_pred hhheeEeCCcccccc---hhHHHHhhcC-----CCCc-CHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHH
Confidence 346999999965544 4999999764 3333 34566677776652 1 11244589999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc-c-eEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD-E-KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~-~-~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
||+++||++.+|+++++|+++.-||- ++++.+.+... . .|+|-|+++++.. +++ |++.+.|+-.|++.
T Consensus 495 rvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 495 RVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 99999999999999999999999998 56666666432 2 4799999999998 666 99999999999876
No 298
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=5e-31 Score=225.36 Aligned_cols=146 Identities=18% Similarity=0.210 Sum_probs=122.1
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC--------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-------- 149 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~-------- 149 (313)
|+++|+++.|++.. ..+|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~~~--~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 75 (171)
T cd03228 1 IEFKNVSFSYPGRP--KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLESLR 75 (171)
T ss_pred CEEEEEEEEcCCCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHHHH
Confidence 46899999998651 128999999999999999999999999999999999999 99999999996532
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceE
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~ 229 (313)
..++|++|++. ++. .|+.||+ ||+||+||++||++++.++++
T Consensus 76 ~~i~~~~~~~~-~~~--~t~~e~l-----------------------------------LS~G~~~rl~la~al~~~p~l 117 (171)
T cd03228 76 KNIAYVPQDPF-LFS--GTIRENI-----------------------------------LSGGQRQRIAIARALLRDPPI 117 (171)
T ss_pred hhEEEEcCCch-hcc--chHHHHh-----------------------------------hCHHHHHHHHHHHHHhcCCCE
Confidence 35899999864 332 4666665 999999999999999999999
Q ss_pred EEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH
Q 021362 230 VIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ 266 (313)
Q Consensus 230 Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~ 266 (313)
|++|+|+..||. .+++.|.++.+. .+++|||++++..
T Consensus 118 lllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 118 LILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 999999999998 455555555432 4699999998753
No 299
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.97 E-value=3.2e-31 Score=262.75 Aligned_cols=195 Identities=19% Similarity=0.165 Sum_probs=152.2
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
++|+++|+++ . +|+++||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 267 ~~l~~~~l~~-----~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~ 334 (510)
T PRK15439 267 PVLTVEDLTG-----E----GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP---ARGGRIMLNGKEINALSTAQ 334 (510)
T ss_pred ceEEEeCCCC-----C----CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEECCCCCHHH
Confidence 4799999983 2 6999999999999999999999999999999999999 99999999986532
Q ss_pred ---CeEEEEecCCC--CCCcccCCcccChHHHHHh-cCC--CCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcch
Q 021362 150 ---DVATVLPMDGF--HLYLSQLDAMEDPKEAHAR-RGA--PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 150 ---~~i~~v~qd~~--~~~~~~ltv~e~~~~~~~~-~~~--~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ 218 (313)
..++|++|+.. .++ +.+|+.+|+...... ... ......+.+.++++.++.. .++++.+||||||||++
T Consensus 335 ~~~~~i~~v~q~~~~~~l~-~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~ 413 (510)
T PRK15439 335 RLARGLVYLPEDRQSSGLY-LDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVL 413 (510)
T ss_pred HHhCCcEECCCChhhCCcc-CCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHH
Confidence 35899999842 222 247888888543111 111 1112234577888888853 46677899999999999
Q ss_pred hhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 219 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 219 ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
||++++.++++|++|+|+..||. .+++.|+++.++ .|++|||++++.. |++ |+++..|.++++..
T Consensus 414 la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 492 (510)
T PRK15439 414 IAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINV 492 (510)
T ss_pred HHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCCH
Confidence 99999999999999999999999 455555555432 4799999999987 554 89998888877643
No 300
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.97 E-value=6.6e-31 Score=263.68 Aligned_cols=194 Identities=15% Similarity=0.104 Sum_probs=155.4
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
-|+++|++++|++.. ..+|+|+||++++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 330 ~i~~~~v~f~y~~~~--~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---~~~G~I~i~g~~i~~~~~~~~ 404 (571)
T TIGR02203 330 DVEFRNVTFRYPGRD--RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE---PDSGQILLDGHDLADYTLASL 404 (571)
T ss_pred eEEEEEEEEEcCCCC--CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEeHHhcCHHHH
Confidence 499999999996521 138999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCCcc----CCCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVY----APSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~~~----~~~LSgG~kq 215 (313)
++.++|++|+++.+. -|++||+.++ .+...+.+++.++++.++. +.+.. ...|||||||
T Consensus 405 ~~~i~~v~Q~~~lf~---~Ti~~Ni~~~-----~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQ 476 (571)
T TIGR02203 405 RRQVALVSQDVVLFN---DTIANNIAYG-----RTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQ 476 (571)
T ss_pred HhhceEEccCccccc---ccHHHHHhcC-----CCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHH
Confidence 346999999976554 5999999654 2223445666666666541 22322 2379999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++|||+++.+++++++|+++.-||+ .+.+.|.++.+ ..|+|||+.+.... +++ |++++.|+.+++.+
T Consensus 477 RiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 477 RLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 99999999999999999999999999 45555555543 24799999988776 655 89999999988754
No 301
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.97 E-value=6.5e-31 Score=266.99 Aligned_cols=201 Identities=15% Similarity=0.116 Sum_probs=162.0
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
+|+++|+++.|++..+...+|+++||++++||+++|+||||||||||+++|+|+++ |++|+|.++|++.
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~i~~~~~~~~ 80 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK---PTSGTYRVAGQDVATLDADAL 80 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEcCcCCHHHH
Confidence 79999999999642112238999999999999999999999999999999999999 9999999999763
Q ss_pred ----CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhh
Q 021362 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~a 222 (313)
.+.++|++|+...++ ++|+.||+.+.....+.+..+..+++.++++.++. ..+..+.+||+||+||++||++
T Consensus 81 ~~~~~~~i~~v~q~~~l~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAra 158 (648)
T PRK10535 81 AQLRREHFGFIFQRYHLLS--HLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARA 158 (648)
T ss_pred HHHHhccEEEEeCCcccCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHH
Confidence 235899999975433 47999999876544443333445567888888874 3456777999999999999999
Q ss_pred hccCceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH--HHh----hcccccCCchHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~ 282 (313)
++.++++|++|+|+..||. .+.+.|+++.+ ..+++||+++.+.. |++ |++++.|++++..
T Consensus 159 L~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 159 LMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 9999999999999999999 44455555433 24799999998865 554 9999999988764
No 302
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.97 E-value=6e-31 Score=261.83 Aligned_cols=170 Identities=15% Similarity=0.167 Sum_probs=137.4
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
-|+++||++.|++.. .+|+|+||++++|+.++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 334 ~I~~~~vsf~Y~~~~---~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~---p~~G~I~i~g~~i~~~~~~lr 407 (529)
T TIGR02868 334 TLELRDLSFGYPGSP---PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD---PLQGEVTLDGVSVSSLQDELR 407 (529)
T ss_pred eEEEEEEEEecCCCC---ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhHHHHHH
Confidence 499999999997532 28999999999999999999999999999999999999 99999999997754
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCcc----CCCCCCcCCCc
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHGVGDP 216 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~LSgG~kqR 216 (313)
+.++||+|+++.+. -|++||+.++. + ....+++.++++..+ .+.+.. ...||||||||
T Consensus 408 ~~i~~V~Q~~~lF~---~TI~eNI~~g~-----~-~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQR 478 (529)
T TIGR02868 408 RRISVFAQDAHLFD---TTVRDNLRLGR-----P-DATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQR 478 (529)
T ss_pred hheEEEccCccccc---ccHHHHHhccC-----C-CCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHH
Confidence 47999999987654 49999997742 2 223455666666544 122332 23799999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcCh
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDL 261 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~ 261 (313)
++||||+..++++|++|+++.-||. .+.+.+.++.+ ..|+|||++
T Consensus 479 iaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 479 LALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999999999999 45566665533 247999974
No 303
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.97 E-value=3e-31 Score=266.10 Aligned_cols=192 Identities=15% Similarity=0.162 Sum_probs=155.0
Q ss_pred EEEEccceEEccc-cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~-~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
-|+++|+++.|++ .. +|+|+||++++||.+||+||||||||||+++|.+++. |++|+|.++|++..
T Consensus 328 ~I~f~~vsf~y~~~~~----vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~---~~~G~I~idg~dI~~i~~~~ 400 (567)
T COG1132 328 SIEFENVSFSYPGKKP----VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD---PTSGEILIDGIDIRDISLDS 400 (567)
T ss_pred eEEEEEEEEEcCCCCc----cccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCEehhhcCHHH
Confidence 4999999999984 55 9999999999999999999999999999999999999 99999999997743
Q ss_pred --CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccC----CCCCCcCC
Q 021362 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGVG 214 (313)
Q Consensus 150 --~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~LSgG~k 214 (313)
+.+++|+||++.+. -|+++|+.++. +. ...+++.++++..+ .+.+..+ ..||||||
T Consensus 401 lr~~I~~V~Qd~~LF~---~TI~~NI~~g~-----~~-at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQr 471 (567)
T COG1132 401 LRKRIGIVSQDPLLFS---GTIRENIALGR-----PD-ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQR 471 (567)
T ss_pred HHHhccEEcccceeec---ccHHHHHhcCC-----CC-CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHH
Confidence 46999999976554 49999997752 22 12344444444332 1233333 38999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHH
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~ 282 (313)
||++||||+..+|++|++|+++.-+|. .+++.+.++.+ ..++|+|.++.+.. +++ |++++.|+.+|+.
T Consensus 472 QrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl 551 (567)
T COG1132 472 QRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELL 551 (567)
T ss_pred HHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999998 45555554443 35799999999988 555 9999999999997
Q ss_pred HH
Q 021362 283 KW 284 (313)
Q Consensus 283 ~~ 284 (313)
..
T Consensus 552 ~~ 553 (567)
T COG1132 552 AK 553 (567)
T ss_pred Hc
Confidence 65
No 304
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.97 E-value=2.2e-31 Score=229.41 Aligned_cols=153 Identities=17% Similarity=0.160 Sum_probs=116.9
Q ss_pred EEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecC
Q 021362 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMD 158 (313)
Q Consensus 79 ~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd 158 (313)
+++|+++.|++.. +|+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+...
T Consensus 1 ~~~~l~~~~~~~~----~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~~~-------- 65 (180)
T cd03214 1 EVENLSVGYGGRT----VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLAS-------- 65 (180)
T ss_pred CeeEEEEEECCee----eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCc--------
Confidence 4689999998755 9999999999999999999999999999999999999 999999998754311
Q ss_pred CCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCc
Q 021362 159 GFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (313)
Q Consensus 159 ~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~ 236 (313)
. .. ......+.+. .++++.++. ..+..+.+||+||+||++||++++.+++++++|+|+
T Consensus 66 -~--~~--~~~~~~i~~~---------------~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~ 125 (180)
T cd03214 66 -L--SP--KELARKIAYV---------------PQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPT 125 (180)
T ss_pred -C--CH--HHHHHHHhHH---------------HHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 0 00 0000011111 015555552 234567799999999999999999999999999999
Q ss_pred cccCh----hhHHHHHhhcc----ceEEEEcChHHHHH
Q 021362 237 LFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 237 lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
..||. .+.+.|.++.+ ..+++||+++++..
T Consensus 126 ~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 126 SHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 99998 45555555543 24799999998865
No 305
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.7e-31 Score=252.34 Aligned_cols=193 Identities=16% Similarity=0.102 Sum_probs=158.9
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
.++++||+++|.+.. .++|+|+||++++||.++|+|++|||||||+++|.|.+. |++|+|.++|.+..
T Consensus 336 ~l~~~~vsF~y~~~~--~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~---~~~G~i~~~g~~~~~l~~~~~ 410 (573)
T COG4987 336 ALELRNVSFTYPGQQ--TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD---PQQGSITLNGVEIASLDEQAL 410 (573)
T ss_pred eeeeccceeecCCCc--cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC---CCCCeeeECCcChhhCChhhH
Confidence 699999999998743 349999999999999999999999999999999999999 99999999997632
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCC----ccCCCCCCcCCC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGS----VYAPSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~----~~~~~LSgG~kq 215 (313)
+.++++.|.... +. -|+++|+.+. .+. ...+.+.+++++++. +.+ ..-..|||||+|
T Consensus 411 ~e~i~vl~Qr~hl-F~--~Tlr~NL~lA-----~~~-AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~r 481 (573)
T COG4987 411 RETISVLTQRVHL-FS--GTLRDNLRLA-----NPD-ASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERR 481 (573)
T ss_pred HHHHhhhccchHH-HH--HHHHHHHhhc-----CCC-CCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHH
Confidence 358889999654 43 4899998764 233 345667778887762 111 233499999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++|||++.+++.++++|+|+..||. ++++.|.+..+ ..+||||++..+.. ||+ |+++++|+..++..
T Consensus 482 RLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 482 RLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred HHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhc
Confidence 99999999999999999999999999 55555555554 24799999999988 766 99999999999876
No 306
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.4e-31 Score=232.33 Aligned_cols=196 Identities=14% Similarity=0.068 Sum_probs=154.8
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC-------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------- 147 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~------- 147 (313)
+++|+++|++..|+++. +|+|+|++|++||-.+|+||||||||||+++++|.+. |++|.+.+.|+.
T Consensus 29 ~~li~l~~v~v~r~gk~----iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~---pssg~~~~~G~~~G~~~~~ 101 (257)
T COG1119 29 EPLIELKNVSVRRNGKK----ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP---PSSGDVTLLGRRFGKGETI 101 (257)
T ss_pred cceEEecceEEEECCEe----eccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC---CCCCceeeeeeeccCCcch
Confidence 45899999999999998 9999999999999999999999999999999999998 999999988754
Q ss_pred --CCCeEEEEecCCCCCCcccCCcccChHHHHH-hcCCC----CCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcch
Q 021362 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAP----WTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 148 --~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~-~~~~~----~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ 218 (313)
.++.||+|+-.-..-+....+++|-+.-+.. ..|.. .+.+.+++..+++.++ ...++++.+||-||||||.
T Consensus 102 ~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvL 181 (257)
T COG1119 102 FELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVL 181 (257)
T ss_pred HHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHH
Confidence 3456888865422223334567776654322 12222 2345667788899888 4578889999999999999
Q ss_pred hhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc-----eEEEEcChHHHHH---HHh----hcccccCC
Q 021362 219 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE-----KWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 219 ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~-----~i~vtHd~~~~~~---rv~----griv~~G~ 277 (313)
||||++.++++||+|+|+-.||- .+.+.|.++... .+||||..+++.. +++ |+++..|.
T Consensus 182 iaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 182 IARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 99999999999999999999998 445555555443 4799999999887 333 77776663
No 307
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6e-31 Score=259.71 Aligned_cols=195 Identities=12% Similarity=0.095 Sum_probs=147.0
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
++|+++|+++.| .. +|+++||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 249 ~~i~~~~l~~~~--~~----~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 319 (491)
T PRK10982 249 VILEVRNLTSLR--QP----SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE---KSAGTITLHGKKINNHNANE 319 (491)
T ss_pred cEEEEeCccccc--Cc----ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc---CCccEEEECCEECCCCCHHH
Confidence 479999999984 23 8999999999999999999999999999999999999 99999999986542
Q ss_pred ---CeEEEEecCCC--CCCcccCCcccC-----hHHHHHhcCC-CCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCC
Q 021362 150 ---DVATVLPMDGF--HLYLSQLDAMED-----PKEAHARRGA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGD 215 (313)
Q Consensus 150 ---~~i~~v~qd~~--~~~~~~ltv~e~-----~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kq 215 (313)
..++|++|+.. .++. .+++.+| +.+....++. ......+.+.++++.++.. .++++.+|||||||
T Consensus 320 ~~~~~i~~~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~q 398 (491)
T PRK10982 320 AINHGFALVTEERRSTGIYA-YLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQ 398 (491)
T ss_pred HHHCCCEEcCCchhhCCccc-CCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHH
Confidence 23889999842 1222 3565544 3221111121 1112234567788887742 46678899999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~e 280 (313)
|++||++++.++++|++|+|+..||. .+++.|.++.++ .|++|||++++.. |++ |+++..++..+
T Consensus 399 rv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~ 477 (491)
T PRK10982 399 KVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKT 477 (491)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999 455555555433 4799999999986 544 78776555443
No 308
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=5e-31 Score=226.62 Aligned_cols=195 Identities=15% Similarity=0.137 Sum_probs=155.1
Q ss_pred EEEEccceEEccc-cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCC-----
Q 021362 77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD----- 150 (313)
Q Consensus 77 ~l~~~~l~~~y~~-~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~----- 150 (313)
|+++.|+.+.|.. ......+|+++|++|.+|+|+.|+|.||||||||++.|+|.+. |++|+|.++|.+..+
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~---~t~G~I~Idg~dVtk~~~~~ 77 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK---PTSGQILIDGVDVTKKSVAK 77 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc---cCCceEEECceecccCCHHH
Confidence 4778899988854 3344569999999999999999999999999999999999999 999999999987543
Q ss_pred ---eEEEEecCCCCCCcccCCcccChHHHHHh---cCCCCC---ccHHHHHHHHHHhhcC----CCccCCCCCCcCCCcc
Q 021362 151 ---VATVLPMDGFHLYLSQLDAMEDPKEAHAR---RGAPWT---FNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPV 217 (313)
Q Consensus 151 ---~i~~v~qd~~~~~~~~ltv~e~~~~~~~~---~~~~~~---~~~~~~~~~l~~l~~~----~~~~~~~LSgG~kqRv 217 (313)
.++-||||+..-..+.||+.||+.++..+ +|.... ...+.+.+.++.++.+ .+.++.-|||||||-+
T Consensus 78 RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQal 157 (263)
T COG1101 78 RANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQAL 157 (263)
T ss_pred HhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHH
Confidence 36678999876666679999999987654 222221 1223345556666533 4557789999999999
Q ss_pred hhhhhhccCceEEEEcCCccccChhhHHHHHhhccc--------eEEEEcChHHHHH---HHh----hcccc
Q 021362 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KWFIEVDLDTAMQ---RVL----KRHIS 274 (313)
Q Consensus 218 ~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~--------~i~vtHd~~~~~~---rv~----griv~ 274 (313)
++++|..+++++|++|+-+.-||+..-+.+.++-++ .+||||+|+.|.. |.+ |+||.
T Consensus 158 sL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~Ivl 229 (263)
T COG1101 158 SLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVL 229 (263)
T ss_pred HHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEE
Confidence 999999999999999999999999554444444332 4799999999998 766 88885
No 309
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.3e-30 Score=261.32 Aligned_cols=193 Identities=15% Similarity=0.039 Sum_probs=146.6
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEe
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~ 156 (313)
||+++||++.|++.. +|+|+||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|. ..++|++
T Consensus 1 ~i~i~nls~~~g~~~----~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~---pd~G~I~~~~~---~~i~~~~ 70 (638)
T PRK10636 1 MIVFSSLQIRRGVRV----LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS---ADGGSYTFPGN---WQLAWVN 70 (638)
T ss_pred CEEEEEEEEEeCCce----eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---CEEEEEe
Confidence 489999999999877 9999999999999999999999999999999999999 99999999874 2488999
Q ss_pred cCCCCCCcccCCcccChHHH-----------------------HHhc----CCCCCccHHHHHHHHHHhhcC---CCccC
Q 021362 157 MDGFHLYLSQLDAMEDPKEA-----------------------HARR----GAPWTFNPLLLLNCLKNLRNQ---GSVYA 206 (313)
Q Consensus 157 qd~~~~~~~~ltv~e~~~~~-----------------------~~~~----~~~~~~~~~~~~~~l~~l~~~---~~~~~ 206 (313)
|+..... .++.+++... .... .........++.++|+.++.. .++++
T Consensus 71 q~~~~~~---~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~ 147 (638)
T PRK10636 71 QETPALP---QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPV 147 (638)
T ss_pred cCCCCCC---CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCch
Confidence 8643221 2333322110 0000 011122345678889998853 46678
Q ss_pred CCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhc----cceEEEEcChHHHHH---HHh----hcccc-
Q 021362 207 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF----DEKWFIEVDLDTAMQ---RVL----KRHIS- 274 (313)
Q Consensus 207 ~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~----~~~i~vtHd~~~~~~---rv~----griv~- 274 (313)
.+|||||||||+||++++.++++|++|+|+..||....+.|.++. ..+|+||||++++.. |++ |+++.
T Consensus 148 ~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~ 227 (638)
T PRK10636 148 SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEY 227 (638)
T ss_pred hhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEe
Confidence 899999999999999999999999999999999995444444443 335799999999876 555 77763
Q ss_pred cCCchHHH
Q 021362 275 TGKPPDVA 282 (313)
Q Consensus 275 ~G~~~ev~ 282 (313)
.|......
T Consensus 228 ~g~~~~~~ 235 (638)
T PRK10636 228 TGNYSSFE 235 (638)
T ss_pred cCCHHHHH
Confidence 56655543
No 310
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=1.8e-30 Score=260.49 Aligned_cols=182 Identities=14% Similarity=0.119 Sum_probs=148.3
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
++|+++|+++.|++. .|+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++ ..++|+
T Consensus 339 ~~l~~~~ls~~~~~~-----~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~---p~~G~I~~~-----~~i~y~ 405 (590)
T PRK13409 339 TLVEYPDLTKKLGDF-----SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK---PDEGEVDPE-----LKISYK 405 (590)
T ss_pred eEEEEcceEEEECCE-----EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEe-----eeEEEe
Confidence 579999999999752 5899999999999999999999999999999999999 999999886 258999
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEEEEc
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d 233 (313)
+|+.... ..+|+.+|+.+.....+ ....+.++++.++. ..++++.+|||||||||+||++++.++++|++|
T Consensus 406 ~Q~~~~~--~~~tv~e~l~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLD 478 (590)
T PRK13409 406 PQYIKPD--YDGTVEDLLRSITDDLG-----SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLD 478 (590)
T ss_pred cccccCC--CCCcHHHHHHHHhhhcC-----hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9996533 35899999887532211 12345778888874 346788899999999999999999999999999
Q ss_pred CCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh---hcccccCC
Q 021362 234 GNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL---KRHISTGK 277 (313)
Q Consensus 234 ~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~---griv~~G~ 277 (313)
+|+..||. .+++.|+++.+ ..++||||++++.. |++ |++...|.
T Consensus 479 EPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~~~~~~g~ 536 (590)
T PRK13409 479 EPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEGEPGKHGH 536 (590)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCcceeeee
Confidence 99999999 55666666643 24799999999886 554 66665544
No 311
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.97 E-value=1.2e-30 Score=262.21 Aligned_cols=195 Identities=18% Similarity=0.208 Sum_probs=154.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
.|+++|+++.|++.. ...+|+|+||++++||.++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 337 ~i~~~~v~f~y~~~~-~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~---p~~G~I~i~g~~i~~~~~~~~ 412 (576)
T TIGR02204 337 EIEFEQVNFAYPARP-DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD---PQSGRILLDGVDLRQLDPAEL 412 (576)
T ss_pred eEEEEEEEEECCCCC-CCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhcCHHHH
Confidence 599999999997521 1238999999999999999999999999999999999999 9999999999663
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCCc----cCCCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~~----~~~~LSgG~kq 215 (313)
.+.++|++|+++.+. .|++||+.++ .+. .+.+++.++++.++. +.+. ....|||||||
T Consensus 413 ~~~i~~~~Q~~~lf~---~Ti~~Ni~~~-----~~~-~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Q 483 (576)
T TIGR02204 413 RARMALVPQDPVLFA---ASVMENIRYG-----RPD-ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQ 483 (576)
T ss_pred HHhceEEccCCcccc---ccHHHHHhcC-----CCC-CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHH
Confidence 246999999977554 5999999664 221 234555555655441 2222 23379999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|+++||++..+++++++|+++.-+|+ .+.+.++++.+ ..|+|||+++.... |++ |++++.|+.+++.+
T Consensus 484 rl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 484 RIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIA 563 (576)
T ss_pred HHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHH
Confidence 99999999999999999999999999 44555555533 24799999988876 665 99999999888754
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 564 ~ 564 (576)
T TIGR02204 564 K 564 (576)
T ss_pred c
Confidence 3
No 312
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.96 E-value=4.4e-30 Score=260.59 Aligned_cols=193 Identities=15% Similarity=0.120 Sum_probs=150.6
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
++|+++||++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++|+|.+ |.. -.++|+
T Consensus 318 ~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~-~~~--~~i~y~ 387 (635)
T PRK11147 318 IVFEMENVNYQIDGKQ----LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ---ADSGRIHC-GTK--LEVAYF 387 (635)
T ss_pred ceEEEeeeEEEECCeE----EEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEE-CCC--cEEEEE
Confidence 4799999999998766 9999999999999999999999999999999999998 99999998 432 258999
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCceEEEE
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~ 232 (313)
+|+...++ +.+|+.+|+.+...... .......+.++++.++.. .++++.+||||||||++||++++.++.+|++
T Consensus 388 ~q~~~~l~-~~~tv~e~l~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlL 464 (635)
T PRK11147 388 DQHRAELD-PEKTVMDNLAEGKQEVM--VNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLIL 464 (635)
T ss_pred eCcccccC-CCCCHHHHHHhhccccc--ccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99753333 35899999876432111 111234567788887742 4667789999999999999999999999999
Q ss_pred cCCccccChhhHHHHHhhcc----ceEEEEcChHHHHH---HHh-----hcccc-cCCchHH
Q 021362 233 DGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL-----KRHIS-TGKPPDV 281 (313)
Q Consensus 233 d~~~lllDE~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~-----griv~-~G~~~ev 281 (313)
|+|+..||....+.|.++.. ..|+||||.+++.. |++ |+++. .|.-.+.
T Consensus 465 DEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 465 DEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred cCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 99999999955444444433 35799999999876 433 45554 4555554
No 313
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.3e-30 Score=215.04 Aligned_cols=202 Identities=15% Similarity=0.139 Sum_probs=155.4
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC--------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~-------- 147 (313)
|++++.+++|.|+... ..+||||++.+||+.||+|.||||||||++||++-+. |+.|+|.+...+
T Consensus 5 PLL~V~~lsk~Yg~~~----gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~---p~~G~v~Y~~r~~~~~dl~~ 77 (258)
T COG4107 5 PLLSVSGLSKLYGPGK----GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT---PDAGTVTYRMRDGQPRDLYT 77 (258)
T ss_pred cceeehhhhhhhCCCc----CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC---CCCCeEEEEcCCCCchhHhh
Confidence 5899999999999887 8999999999999999999999999999999999999 999999875422
Q ss_pred ---------CCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCC-CCccHHHHHHHHHHhhcC---CCccCCCCCCcCC
Q 021362 148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVG 214 (313)
Q Consensus 148 ---------~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~k 214 (313)
.+..-|+|.|++..-.....+.-.|+-.-+...|.. .-..++.+.++|+.+... .+..+.++||||+
T Consensus 78 msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMq 157 (258)
T COG4107 78 MSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQ 157 (258)
T ss_pred hchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHH
Confidence 011368899987654443345555654322111111 123456677889988843 3446779999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCch
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ 279 (313)
||+.||+-++..+|.+++|+|+-.||- .+++.++.+..+ .++||||+..+.. |.. |++++.|-++
T Consensus 158 QRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTD 237 (258)
T COG4107 158 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTD 237 (258)
T ss_pred HHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecccccc
Confidence 999999999999999999999999998 445555555433 4799999999876 544 9999999888
Q ss_pred HHHHH
Q 021362 280 DVAKW 284 (313)
Q Consensus 280 ev~~~ 284 (313)
.++.+
T Consensus 238 rvLDD 242 (258)
T COG4107 238 RVLDD 242 (258)
T ss_pred ccccC
Confidence 88654
No 314
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.96 E-value=3.7e-30 Score=228.13 Aligned_cols=171 Identities=11% Similarity=0.023 Sum_probs=130.6
Q ss_pred EEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC----------
Q 021362 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---------- 148 (313)
Q Consensus 79 ~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~---------- 148 (313)
.+.|+.+.|+... .+|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~~~~~~~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~ 75 (218)
T cd03290 2 QVTNGYFSWGSGL---ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKNESEPSFEATRS 75 (218)
T ss_pred eeeeeEEecCCCC---cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCcccccccccccch
Confidence 5788999997432 29999999999999999999999999999999999999 9999999998642
Q ss_pred --CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc-------------CCCccCCCCCCcC
Q 021362 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-------------QGSVYAPSFDHGV 213 (313)
Q Consensus 149 --~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-------------~~~~~~~~LSgG~ 213 (313)
.+.++|++|++..+ . .|+.+|+.+... . ..++..+.++.++. ..+.++..||+||
T Consensus 76 ~~~~~i~~~~q~~~~~-~--~t~~~nl~~~~~---~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~ 145 (218)
T cd03290 76 RNRYSVAYAAQKPWLL-N--ATVEENITFGSP---F----NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQ 145 (218)
T ss_pred hhcceEEEEcCCCccc-c--ccHHHHHhhcCc---C----CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHH
Confidence 13589999996543 3 689999876421 1 12222333343331 1234567999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccChhhHHHH------Hhhcc---ceEEEEcChHHHH
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV------SSMFD---EKWFIEVDLDTAM 265 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l------~~l~~---~~i~vtHd~~~~~ 265 (313)
+||++||++++.++++|++|+|+..||....+.+ ..+.+ ..|++||+++.+.
T Consensus 146 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~ 206 (218)
T cd03290 146 RQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP 206 (218)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh
Confidence 9999999999999999999999999999433322 22322 2479999999864
No 315
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.96 E-value=1.6e-30 Score=220.66 Aligned_cols=131 Identities=18% Similarity=0.221 Sum_probs=110.0
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCC-------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD------- 150 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~------- 150 (313)
|+++|+++.|++.. +++++||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+...
T Consensus 1 l~~~~l~~~~~~~~----vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~ 73 (163)
T cd03216 1 LELRGITKRFGGVK----ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFASPRDAR 73 (163)
T ss_pred CEEEEEEEEECCeE----EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCcCCHHHHH
Confidence 46899999998765 9999999999999999999999999999999999999 999999998753211
Q ss_pred --eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCce
Q 021362 151 --VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 --~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar 228 (313)
.++|++ +||+||+||+++|++++.+++
T Consensus 74 ~~~i~~~~---------------------------------------------------qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 74 RAGIAMVY---------------------------------------------------QLSVGERQMVEIARALARNAR 102 (163)
T ss_pred hcCeEEEE---------------------------------------------------ecCHHHHHHHHHHHHHhcCCC
Confidence 122222 299999999999999999999
Q ss_pred EEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH
Q 021362 229 VVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 229 ~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
++++|+|+..||. .+++.|+++.++ .+++|||++++..
T Consensus 103 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 103 LLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 9999999999999 455556555432 4799999998765
No 316
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.96 E-value=1e-30 Score=260.99 Aligned_cols=193 Identities=16% Similarity=0.092 Sum_probs=150.0
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
.|+++|+++.|++.. ..+|+|+||++++|+.++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 316 ~i~~~~v~~~y~~~~--~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~i~~~~~~~~ 390 (544)
T TIGR01842 316 HLSVENVTIVPPGGK--KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP---PTSGSVRLDGADLKQWDRETF 390 (544)
T ss_pred eEEEEEEEEEcCCCC--ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEehhhCCHHHH
Confidence 599999999996421 128999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHH---------HHHhhcCCC----ccCCCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---------LKNLRNQGS----VYAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~---------l~~l~~~~~----~~~~~LSgG~kq 215 (313)
++.++|++|+++.+. .|++||+.+.. + ....+++.+. ++.+..+.+ .....|||||||
T Consensus 391 ~~~i~~v~q~~~lf~---~ti~~Ni~~~~-----~-~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~q 461 (544)
T TIGR01842 391 GKHIGYLPQDVELFP---GTVAENIARFG-----E-NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQ 461 (544)
T ss_pred hhheEEecCCccccc---ccHHHHHhccC-----C-CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHH
Confidence 346999999976543 49999997431 1 1123333333 333322222 234589999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhc---cceEEEEcChHHHHH--HHh----hcccccCCchHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMF---DEKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~---~~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~ 282 (313)
|++||||+..++++|++|+++..||. .+.+.|.++. ...+++||+++.+.. +++ |++++.|+.+++.
T Consensus 462 rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 462 RIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVL 541 (544)
T ss_pred HHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 99999999999999999999999998 4556666653 234799999997765 555 9999999987764
Q ss_pred H
Q 021362 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 542 ~ 542 (544)
T TIGR01842 542 A 542 (544)
T ss_pred h
Confidence 3
No 317
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.96 E-value=2.2e-30 Score=265.53 Aligned_cols=194 Identities=15% Similarity=0.154 Sum_probs=154.7
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
.|+++|+++.|++.. ..+|+|+||+|++|+.++|+|+||||||||+|+|+|++. |++|+|.++|.+..
T Consensus 455 ~i~~~~vsf~y~~~~--~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~---p~~G~I~idg~~i~~~~~~~~ 529 (694)
T TIGR01846 455 AITFENIRFRYAPDS--PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT---PQHGQVLVDGVDLAIADPAWL 529 (694)
T ss_pred eEEEEEEEEEcCCCC--ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEehhhCCHHHH
Confidence 499999999996421 128999999999999999999999999999999999999 99999999997743
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCc----cCCCCCCcCCC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~LSgG~kq 215 (313)
+.++|++|+++.+. .|++||+.+. .+. ...+.+.++++..+ .+.+. ....|||||||
T Consensus 530 r~~i~~v~q~~~lf~---~ti~eNi~~~-----~~~-~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~q 600 (694)
T TIGR01846 530 RRQMGVVLQENVLFS---RSIRDNIALC-----NPG-APFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQ 600 (694)
T ss_pred HHhCeEEccCCeehh---hhHHHHHhcC-----CCC-CCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHH
Confidence 45999999976554 5999999763 121 23445555555443 12222 34489999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||||++.++++|++|+++..||+ .+.+.|.++.. ..|++||+++.+.. |++ |++++.|+.+++..
T Consensus 601 ri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 601 RIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 99999999999999999999999999 45566666533 24799999999876 655 99999999988865
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 681 ~ 681 (694)
T TIGR01846 681 L 681 (694)
T ss_pred c
Confidence 4
No 318
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.96 E-value=3.6e-30 Score=259.07 Aligned_cols=193 Identities=16% Similarity=0.131 Sum_probs=150.7
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
.|+++|+++.|++.. .+|+|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 334 ~i~~~~v~~~y~~~~---~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~ 407 (585)
T TIGR01192 334 AVEFRHITFEFANSS---QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD---PTVGQILIDGIDINTVTRESL 407 (585)
T ss_pred eEEEEEEEEECCCCC---ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC---CCCCEEEECCEEhhhCCHHHH
Confidence 599999999997521 28999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCC----CccCCCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQG----SVYAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~----~~~~~~LSgG~kq 215 (313)
++.++|++|+++.+. .|++||+.++. +. ...+.+.+.++..+ .+. ......|||||||
T Consensus 408 ~~~i~~v~q~~~lf~---~ti~~Ni~~~~-----~~-~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~q 478 (585)
T TIGR01192 408 RKSIATVFQDAGLFN---RSIRENIRLGR-----EG-ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQ 478 (585)
T ss_pred HhheEEEccCCccCc---ccHHHHHhcCC-----CC-CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHH
Confidence 246999999976543 59999997642 21 12233333333221 111 2344589999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||++++.++++|++|+++..||. .+.+.|.++.. ..|+|||+++.+.. +++ |++++.|+.+++.+
T Consensus 479 rl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 479 RLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHH
Confidence 99999999999999999999999999 44455555432 24799999999866 555 99999999888865
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 559 ~ 559 (585)
T TIGR01192 559 K 559 (585)
T ss_pred C
Confidence 3
No 319
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.96 E-value=4.1e-30 Score=258.01 Aligned_cols=193 Identities=12% Similarity=0.133 Sum_probs=152.2
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
-|+++++++.|+.. ...+|+|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|++.
T Consensus 313 ~I~~~~v~~~y~~~--~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~---p~~G~i~~~g~~~~~~~~~~~ 387 (569)
T PRK10789 313 ELDVNIRQFTYPQT--DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD---VSEGDIRFHDIPLTKLQLDSW 387 (569)
T ss_pred cEEEEEEEEECCCC--CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEHhhCCHHHH
Confidence 48999999999742 1238999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCC----ccCCCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGS----VYAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~----~~~~~LSgG~kq 215 (313)
++.++|++|+++.+. -|++||+.++. +. ...+.+.++++..+. +.+ .....|||||||
T Consensus 388 ~~~i~~v~q~~~lf~---~ti~~Ni~~~~-----~~-~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~q 458 (569)
T PRK10789 388 RSRLAVVSQTPFLFS---DTVANNIALGR-----PD-ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQ 458 (569)
T ss_pred HhheEEEccCCeecc---ccHHHHHhcCC-----CC-CCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHH
Confidence 246999999976543 49999996541 11 233444455544331 112 234489999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||++++.+++++++|+++..||. .+++.|+++.+ ..+++||+++.+.. |++ |++++.|+.+++.+
T Consensus 459 Ri~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 459 RISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred HHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHH
Confidence 99999999999999999999999999 45555555533 24799999988776 655 99999999888764
No 320
>PLN03073 ABC transporter F family; Provisional
Probab=99.96 E-value=2.7e-29 Score=256.46 Aligned_cols=190 Identities=15% Similarity=0.126 Sum_probs=148.2
Q ss_pred cEEEEccceEEccc-cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEE
Q 021362 76 PVVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 76 ~~l~~~~l~~~y~~-~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~ 154 (313)
++|+++|+++.|++ .. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.+++. ..++|
T Consensus 507 ~~L~~~~ls~~y~~~~~----il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~---p~~G~I~~~~~---~~igy 576 (718)
T PLN03073 507 PIISFSDASFGYPGGPL----LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ---PSSGTVFRSAK---VRMAV 576 (718)
T ss_pred ceEEEEeeEEEeCCCCe----eEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCceEEECCc---eeEEE
Confidence 57999999999964 34 8999999999999999999999999999999999999 99999998753 46999
Q ss_pred EecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCceEEE
Q 021362 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 155 v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~ar~Li 231 (313)
++|+.. . .+++.++..+..... .+ ....+++.++|+.++.. .++++.+||||||||++||++++.++++|+
T Consensus 577 v~Q~~~--~--~l~~~~~~~~~~~~~-~~-~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLL 650 (718)
T PLN03073 577 FSQHHV--D--GLDLSSNPLLYMMRC-FP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILL 650 (718)
T ss_pred Eecccc--c--cCCcchhHHHHHHHh-cC-CCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEE
Confidence 999842 1 255666644332111 11 12346678889998853 356778999999999999999999999999
Q ss_pred EcCCccccChhhH----HHHHhhccceEEEEcChHHHHH---HHh----hccc-ccCCchHH
Q 021362 232 VDGNYLFLDGGVW----KDVSSMFDEKWFIEVDLDTAMQ---RVL----KRHI-STGKPPDV 281 (313)
Q Consensus 232 ~d~~~lllDE~~~----~~l~~l~~~~i~vtHd~~~~~~---rv~----griv-~~G~~~ev 281 (313)
+|+|+..||.... +.+.+.....|+||||++++.. |++ |+++ ..|...+.
T Consensus 651 LDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 651 LDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred EcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 9999999999433 3333332235799999999886 444 7777 56766554
No 321
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.96 E-value=1.9e-29 Score=231.97 Aligned_cols=185 Identities=10% Similarity=0.089 Sum_probs=140.1
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEE
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~ 154 (313)
-+.|+++|+++. +.. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++| .++|
T Consensus 37 ~~~l~i~nls~~--~~~----vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~---p~~G~I~i~g-----~i~y 102 (282)
T cd03291 37 DNNLFFSNLCLV--GAP----VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE---PSEGKIKHSG-----RISF 102 (282)
T ss_pred CCeEEEEEEEEe--ccc----ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECC-----EEEE
Confidence 347999999985 334 9999999999999999999999999999999999999 9999999987 4899
Q ss_pred EecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cC----CCccCCCCCCcCCCcchhhh
Q 021362 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQ----GSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 155 v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~----~~~~~~~LSgG~kqRv~ia~ 221 (313)
++|++.. +. .|+.+|+.+.... ...++.+.++.++ .. .+..+.+||+||+||++||+
T Consensus 103 v~q~~~l-~~--~tv~enl~~~~~~-------~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAr 172 (282)
T cd03291 103 SSQFSWI-MP--GTIKENIIFGVSY-------DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLAR 172 (282)
T ss_pred EeCcccc-cc--cCHHHHhhccccc-------CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHH
Confidence 9999653 33 4899988753211 0111222222221 11 12234699999999999999
Q ss_pred hhccCceEEEEcCCccccChhhHHHHH-----hhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 222 LVGLQHKVVIVDGNYLFLDGGVWKDVS-----SMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE~~~~~l~-----~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
+++.++++|++|+|+..||....+.+. .+.. ..+++|||++.+.. |++ |+++..|+++++..
T Consensus 173 aL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 173 AVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQS 247 (282)
T ss_pred HHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999984433332 2222 24799999998755 554 89888998887753
No 322
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.96 E-value=6.9e-30 Score=225.92 Aligned_cols=174 Identities=12% Similarity=0.074 Sum_probs=130.2
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceee-cCCCCCCCeEEEEecCCCCCCcccCCcccChH
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~-~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~ 174 (313)
+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|. ++|... .+.+++..+ +.+|+.||+.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~sG~i~~~~~~~~-----~~~~~~~l~--~~ltv~enl~ 71 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA---PDEGDFIGLRGDAL-----PLGANSFIL--PGLTGEENAR 71 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCCCEEEecCcee-----ccccccccC--CcCcHHHHHH
Confidence 7999999999999999999999999999999999999 9999997 766432 122332222 3589999999
Q ss_pred HHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChh----hHHHHH
Q 021362 175 EAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVS 248 (313)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~----~~~~l~ 248 (313)
+....++.... +....+++.++ ...+.++.+||+|||||+++|++++.+++++++|+|...+|.. +++.+.
T Consensus 72 ~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~ 148 (213)
T PRK15177 72 MMASLYGLDGD---EFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALA 148 (213)
T ss_pred HHHHHcCCCHH---HHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHH
Confidence 87665543221 11122223333 3446677899999999999999999999999999998888983 333343
Q ss_pred hh-cc-ceEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 249 SM-FD-EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 249 ~l-~~-~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
+. .+ ..+++|||++++.. +++ |+++..|+.++..
T Consensus 149 ~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 191 (213)
T PRK15177 149 CQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQAT 191 (213)
T ss_pred HHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHH
Confidence 22 22 24799999999875 555 8999888877763
No 323
>PLN03130 ABC transporter C family member; Provisional
Probab=99.96 E-value=6.3e-30 Score=279.98 Aligned_cols=193 Identities=16% Similarity=0.158 Sum_probs=158.0
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
-|+++||+++|.... .++|+|+||+|++||.+||+|++|||||||+++|.|++. |++|+|.++|.+..
T Consensus 1237 ~I~f~nVsf~Y~~~~--~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~---p~~G~I~IDG~dI~~i~l~~L 1311 (1622)
T PLN03130 1237 SIKFEDVVLRYRPEL--PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE---LERGRILIDGCDISKFGLMDL 1311 (1622)
T ss_pred cEEEEEEEEEeCCCC--CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCEecccCCHHHH
Confidence 499999999996421 239999999999999999999999999999999999999 99999999998743
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCcc----CCCCCCcCCC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~LSgG~kq 215 (313)
+.+++|+||++.+. -|+++|+.... ....+.+.++++..+ .+.+.. ...|||||||
T Consensus 1312 R~~IsiVpQdp~LF~---GTIreNLd~~~-------~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQ 1381 (1622)
T PLN03130 1312 RKVLGIIPQAPVLFS---GTVRFNLDPFN-------EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQ 1381 (1622)
T ss_pred HhccEEECCCCcccc---ccHHHHhCcCC-------CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHH
Confidence 56999999987654 49999996531 123455666666544 123332 2389999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||||+++++++|++|+.+.-+|. .+.+.|++.++. .|+|+|.++.+.. ||+ |++++.|+++++++
T Consensus 1382 rlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1382 LLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999998 566666666543 4799999999988 766 99999999999875
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 1462 ~ 1462 (1622)
T PLN03130 1462 N 1462 (1622)
T ss_pred C
Confidence 3
No 324
>PLN03232 ABC transporter C family member; Provisional
Probab=99.96 E-value=5.3e-30 Score=279.91 Aligned_cols=193 Identities=15% Similarity=0.146 Sum_probs=157.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
.|+++||+++|+.. ..++|+|+||+|++||.+||+|++|||||||+++|.|++. |++|+|.++|.+.
T Consensus 1234 ~I~f~nVsf~Y~~~--~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~---p~~G~I~IdG~di~~i~~~~l 1308 (1495)
T PLN03232 1234 SIKFEDVHLRYRPG--LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE---LEKGRIMIDDCDVAKFGLTDL 1308 (1495)
T ss_pred cEEEEEEEEEECCC--CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCceEEECCEEhhhCCHHHH
Confidence 49999999999542 1239999999999999999999999999999999999999 9999999999874
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCc----cCCCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~LSgG~kq 215 (313)
++.+++|+||++.+. -|+++|+.+.. ....+.+.++++..+ .+.+. ....|||||||
T Consensus 1309 R~~i~iVpQdp~LF~---gTIr~NL~~~~-------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQ 1378 (1495)
T PLN03232 1309 RRVLSIIPQSPVLFS---GTVRFNIDPFS-------EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQ 1378 (1495)
T ss_pred HhhcEEECCCCeeeC---ccHHHHcCCCC-------CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHH
Confidence 346999999987654 49999996531 223455666666544 12232 23389999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||||+++++++|++||++.-+|. .+.+.|++..+. .|+|+|.++.+.. ||+ |++++.|+++++++
T Consensus 1379 rlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1379 LLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999 456666666432 4799999999988 766 99999999999875
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 1459 ~ 1459 (1495)
T PLN03232 1459 R 1459 (1495)
T ss_pred C
Confidence 3
No 325
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.96 E-value=9.9e-30 Score=229.62 Aligned_cols=157 Identities=14% Similarity=0.115 Sum_probs=123.2
Q ss_pred ccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHH
Q 021362 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (313)
Q Consensus 97 L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~ 176 (313)
|+..+++|++||+++|+||||||||||+++|+|+++ |++|+|.++|. .++|++|+....+ .+|+.|++.+.
T Consensus 15 l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~---p~~G~i~~~g~----~i~~~~q~~~~~~--~~tv~e~l~~~ 85 (246)
T cd03237 15 LEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK---PDEGDIEIELD----TVSYKPQYIKADY--EGTVRDLLSSI 85 (246)
T ss_pred EEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCc----eEEEecccccCCC--CCCHHHHHHHH
Confidence 333344445899999999999999999999999999 99999999885 6899999865333 37999998664
Q ss_pred HHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhh
Q 021362 177 HARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSM 250 (313)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l 250 (313)
....+ .......++++.++. ..++++.+|||||+||++||++++.+++++++|+|+..||. .+.+.|+++
T Consensus 86 ~~~~~----~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 161 (246)
T cd03237 86 TKDFY----THPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRF 161 (246)
T ss_pred hhhcc----ccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 33221 112345677777773 34567789999999999999999999999999999999999 455566665
Q ss_pred cc----ceEEEEcChHHHHH
Q 021362 251 FD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 251 ~~----~~i~vtHd~~~~~~ 266 (313)
.+ ..|+||||++++..
T Consensus 162 ~~~~~~tiiivsHd~~~~~~ 181 (246)
T cd03237 162 AENNEKTAFVVEHDIIMIDY 181 (246)
T ss_pred HHhcCCEEEEEeCCHHHHHH
Confidence 42 24799999999876
No 326
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=3.8e-30 Score=209.91 Aligned_cols=182 Identities=14% Similarity=0.057 Sum_probs=147.6
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------CC
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 150 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------~~ 150 (313)
++.++|++...++.. .|.++||+|.+|||+.|+||||||||||+.-+.|.+...+.-+|++++++++. .+
T Consensus 2 ~l~l~nvsl~l~g~c----LLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qR 77 (213)
T COG4136 2 MLCLKNVSLRLPGSC----LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQR 77 (213)
T ss_pred ceeeeeeeecCCCce----EEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhh
Confidence 578999999999888 99999999999999999999999999999999999985555689999999773 35
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCce
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar 228 (313)
.+|++|||+..++ +++|.+|+.|..... ......+..+...|++.+.. .++.+.+||||||-||++-+++...++
T Consensus 78 q~GiLFQD~lLFp--hlsVg~Nl~fAlp~~-~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk 154 (213)
T COG4136 78 QIGILFQDALLFP--HLSVGQNLLFALPAT-LKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPK 154 (213)
T ss_pred heeeeeccccccc--ccccccceEEecCcc-cccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcc
Confidence 6999999977555 599999998864321 11223345577888988833 355666999999999999999999999
Q ss_pred EEEEcCCccccChhhHHHHHhhcc--------ceEEEEcChHHHH
Q 021362 229 VVIVDGNYLFLDGGVWKDVSSMFD--------EKWFIEVDLDTAM 265 (313)
Q Consensus 229 ~Li~d~~~lllDE~~~~~l~~l~~--------~~i~vtHd~~~~~ 265 (313)
++++|+|+.-||..+.+..+++.- -+++||||...+.
T Consensus 155 ~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp 199 (213)
T COG4136 155 ALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP 199 (213)
T ss_pred eeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 999999999999866666665531 1479999998775
No 327
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.96 E-value=4.3e-30 Score=240.92 Aligned_cols=167 Identities=17% Similarity=0.174 Sum_probs=135.0
Q ss_pred EECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCC
Q 021362 112 LAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT 185 (313)
Q Consensus 112 l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~ 185 (313)
|+||||||||||+++|+|+++ |++|+|.++|.+. .+.++|++|+...++ .+|+.+|+.+....++.+..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~---p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~--~~tv~enl~~~~~~~~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ---PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFP--HMTVEENVAFGLKMRKVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHHHCCEEEEecCccccC--CCcHHHHHHHHHhhcCCCHH
Confidence 689999999999999999999 9999999999653 235999999965433 58999999987654443322
Q ss_pred ccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceE
Q 021362 186 FNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKW 255 (313)
Q Consensus 186 ~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i 255 (313)
...+++.++++.++. ..++++.+||||||||++||++++.++++|++|+|+..||. .+++.|+++.+ ..|
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii 155 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFV 155 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 334567788888874 34667789999999999999999999999999999999999 45555555543 247
Q ss_pred EEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 256 FIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 256 ~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++|||++++.. |++ |+++..|+++++..
T Consensus 156 ivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 156 FVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred EEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999876 555 99999999988754
No 328
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.96 E-value=1.6e-29 Score=251.71 Aligned_cols=176 Identities=18% Similarity=0.143 Sum_probs=139.3
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
-|+++|+++.|++.. .++|+|+||+|++|+.++|+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 320 ~i~~~~v~f~y~~~~--~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~I~~~g~~i~~~~~~~l 394 (529)
T TIGR02857 320 SLEFSGLSVAYPGRR--APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD---PTEGSIAVNGVPLADADADSW 394 (529)
T ss_pred eEEEEEEEEECCCCC--cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEehhhCCHHHH
Confidence 499999999997531 238999999999999999999999999999999999999 99999999997642
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCCc----cCCCCCCcCCC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~~----~~~~LSgG~kq 215 (313)
+.++|++|+++.+. .|++||+.++. +. ...+++.++++..+. +.+. ....|||||||
T Consensus 395 r~~i~~v~Q~~~lf~---~ti~~Ni~~~~-----~~-~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~q 465 (529)
T TIGR02857 395 RDQIAWVPQHPFLFA---GTIAENIRLAR-----PD-ASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQ 465 (529)
T ss_pred HhheEEEcCCCcccC---cCHHHHHhccC-----CC-CCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHH
Confidence 35999999976553 59999997642 11 133455555555441 2222 33489999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ 266 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~ 266 (313)
|++|||+++++++++++|+++.-+|+ .+.+.+.++.. ..|+|||+++....
T Consensus 466 ri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ 522 (529)
T TIGR02857 466 RLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAER 522 (529)
T ss_pred HHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 99999999999999999999999999 45555555532 24799999987643
No 329
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.1e-29 Score=215.97 Aligned_cols=202 Identities=18% Similarity=0.103 Sum_probs=150.9
Q ss_pred ccEEEEccceEEcccc-ccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCC---
Q 021362 75 IPVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD--- 150 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~-~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~--- 150 (313)
|.+|+++||+...+++ . +|++|||+|++||+.+|+||||||||||.++|+|.-. -.+++|+|.++|+++..
T Consensus 1 m~~L~I~dLhv~v~~~ke----ILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~-Y~Vt~G~I~~~GedI~~l~~ 75 (251)
T COG0396 1 MMMLEIKDLHVEVEGKKE----ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK-YEVTEGEILFDGEDILELSP 75 (251)
T ss_pred CceeEEeeeEEEecCchh----hhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC-ceEecceEEECCcccccCCH
Confidence 4589999999999885 6 9999999999999999999999999999999999852 01899999999988432
Q ss_pred ------eEEEEecCCCCCCcccCCcccChHHHHHhc-CCC--CCccHHHHHHHHHHhhc---CCCccCC-CCCCcCCCcc
Q 021362 151 ------VATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAP--WTFNPLLLLNCLKNLRN---QGSVYAP-SFDHGVGDPV 217 (313)
Q Consensus 151 ------~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~-~~~--~~~~~~~~~~~l~~l~~---~~~~~~~-~LSgG~kqRv 217 (313)
-+..-||.|.-++ ..++.+.+....... +.. ......++.+.++.++. ..++++. -||||||+|.
T Consensus 76 ~ERAr~GifLafQ~P~ei~--GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~ 153 (251)
T COG0396 76 DERARAGIFLAFQYPVEIP--GVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRN 153 (251)
T ss_pred hHHHhcCCEEeecCCccCC--CeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHH
Confidence 2566788876544 477777776655432 211 12345567778888873 4566777 9999999999
Q ss_pred hhhhhhccCceEEEEcCCccccChh----hHHHHHhhccc---eEEEEcChHHHHH------HHh--hcccccCCchHHH
Q 021362 218 EDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDE---KWFIEVDLDTAMQ------RVL--KRHISTGKPPDVA 282 (313)
Q Consensus 218 ~ia~al~~~ar~Li~d~~~lllDE~----~~~~l~~l~~~---~i~vtHd~~~~~~------rv~--griv~~G~~~ev~ 282 (313)
.|+++++..++..|+|++=..||-. +-+-+..+.+. .++|||....+.. .++ ||++..|.+ +++
T Consensus 154 EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el~ 232 (251)
T COG0396 154 EILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-ELA 232 (251)
T ss_pred HHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HHH
Confidence 9977766666666666666666653 33334444443 3799999998877 233 999999999 776
Q ss_pred HH
Q 021362 283 KW 284 (313)
Q Consensus 283 ~~ 284 (313)
.+
T Consensus 233 ~~ 234 (251)
T COG0396 233 EE 234 (251)
T ss_pred HH
Confidence 54
No 330
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.96 E-value=7.6e-30 Score=276.56 Aligned_cols=211 Identities=13% Similarity=0.068 Sum_probs=161.9
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC----CCe
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----PDV 151 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~----~~~ 151 (313)
.+|+++||++.|+.+.+...+|+|||+++++|++++|+||||||||||+++|+|+.+.-.|++|+|.++|++. ++.
T Consensus 758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~ 837 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRS 837 (1394)
T ss_pred ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcc
Confidence 3689999999996332233499999999999999999999999999999999999851125789999999764 346
Q ss_pred EEEEecCCCCCCcccCCcccChHHHHHhcC---CCCCccHHHHHHHHHHhhc--CCCccCC----CCCCcCCCcchhhhh
Q 021362 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRG---APWTFNPLLLLNCLKNLRN--QGSVYAP----SFDHGVGDPVEDDIL 222 (313)
Q Consensus 152 i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~---~~~~~~~~~~~~~l~~l~~--~~~~~~~----~LSgG~kqRv~ia~a 222 (313)
++|++|++.+++ .+||+||+.+....+. .+..+..+++.++++.++. ..+..+. .||||||||++||++
T Consensus 838 i~yv~Q~~~~~~--~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~a 915 (1394)
T TIGR00956 838 IGYVQQQDLHLP--TSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVE 915 (1394)
T ss_pred eeeecccccCCC--CCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHH
Confidence 899999876544 4899999998765442 1112233567888888874 3455554 799999999999999
Q ss_pred hccCce-EEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHH-H---HHh----h-cccccCCchHH---H
Q 021362 223 VGLQHK-VVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAM-Q---RVL----K-RHISTGKPPDV---A 282 (313)
Q Consensus 223 l~~~ar-~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~-~---rv~----g-riv~~G~~~ev---~ 282 (313)
++.+++ +|++|||+..||. .+++.|+++.++ +|+++|+++... . |++ | ++++.|++.+. +
T Consensus 916 L~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~ 995 (1394)
T TIGR00956 916 LVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTI 995 (1394)
T ss_pred HHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchH
Confidence 999997 9999999999999 566777766443 479999998643 2 554 5 99999987532 3
Q ss_pred HHHHHh
Q 021362 283 KWRIEY 288 (313)
Q Consensus 283 ~~~~~~ 288 (313)
.+++..
T Consensus 996 ~~yf~~ 1001 (1394)
T TIGR00956 996 INYFEK 1001 (1394)
T ss_pred HHHHHh
Confidence 444543
No 331
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.96 E-value=3e-29 Score=208.61 Aligned_cols=128 Identities=16% Similarity=0.143 Sum_probs=112.5
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEec
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~q 157 (313)
|+++|+++.|++.. +++++||++++||+++|+||||||||||+++|+|+++ |++|+|+++|. ..++|++|
T Consensus 1 l~~~~l~~~~~~~~----~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~---~~i~~~~~ 70 (144)
T cd03221 1 IELENLSKTYGGKL----LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGST---VKIGYFEQ 70 (144)
T ss_pred CEEEEEEEEECCce----EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCe---EEEEEEcc
Confidence 46899999998755 9999999999999999999999999999999999999 99999999884 35777776
Q ss_pred CCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCcc
Q 021362 158 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 237 (313)
Q Consensus 158 d~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~l 237 (313)
||+||+||++||++++.+++++++|+|+.
T Consensus 71 ---------------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 71 ---------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred ---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 99999999999999999999999999999
Q ss_pred ccCh----hhHHHHHhhccceEEEEcChHHHHH
Q 021362 238 FLDG----GVWKDVSSMFDEKWFIEVDLDTAMQ 266 (313)
Q Consensus 238 llDE----~~~~~l~~l~~~~i~vtHd~~~~~~ 266 (313)
.||. .+.+.++++....+++||+++++..
T Consensus 100 ~LD~~~~~~l~~~l~~~~~til~~th~~~~~~~ 132 (144)
T cd03221 100 HLDLESIEALEEALKEYPGTVILVSHDRYFLDQ 132 (144)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHH
Confidence 9998 4455555553345799999998854
No 332
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.96 E-value=2.2e-29 Score=251.63 Aligned_cols=180 Identities=15% Similarity=0.133 Sum_probs=141.3
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
.|+++|+++.|++.. .+|+|+||+|++|+.++|+||||||||||+++|+|+++ |++|+|.++|++..
T Consensus 322 ~i~~~~v~f~y~~~~---~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~ 395 (547)
T PRK10522 322 TLELRNVTFAYQDNG---FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ---PQSGEILLDGKPVTAEQPEDY 395 (547)
T ss_pred eEEEEEEEEEeCCCC---eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCCCCHHHH
Confidence 599999999997421 28999999999999999999999999999999999999 99999999997643
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCc-------cCCCCCCcCCCcchhhh
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSV-------YAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-------~~~~LSgG~kqRv~ia~ 221 (313)
+.++|++||++.+. .|+.+|- ...+.+.+.+.++.++..... ....||||||||++|||
T Consensus 396 ~~~i~~v~q~~~lf~---~ti~~n~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lAR 462 (547)
T PRK10522 396 RKLFSAVFTDFHLFD---QLLGPEG----------KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLL 462 (547)
T ss_pred hhheEEEecChhHHH---Hhhcccc----------CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHH
Confidence 46999999976443 4677761 122345667777777633221 12489999999999999
Q ss_pred hhccCceEEEEcCCccccChhh----HHHHHhhc---c-ceEEEEcChHHHHH--HHh----hccccc
Q 021362 222 LVGLQHKVVIVDGNYLFLDGGV----WKDVSSMF---D-EKWFIEVDLDTAMQ--RVL----KRHIST 275 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE~~----~~~l~~l~---~-~~i~vtHd~~~~~~--rv~----griv~~ 275 (313)
|++.++++|++|+++..||.+. .+.+.+.. + ..++|||+++.... +++ |++++.
T Consensus 463 al~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 463 ALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999943 34444332 2 35799999987665 554 777764
No 333
>PTZ00243 ABC transporter; Provisional
Probab=99.96 E-value=3.5e-29 Score=273.66 Aligned_cols=192 Identities=14% Similarity=0.111 Sum_probs=156.7
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
-|+++||+++|++.. ..+|+|+||+|++||.+||+|++|||||||+++|.|++. |++|+|.++|++.
T Consensus 1308 ~I~f~nVsf~Y~~~~--~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~---p~~G~I~IDG~di~~i~l~~L 1382 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGL--PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE---VCGGEIRVNGREIGAYGLREL 1382 (1560)
T ss_pred eEEEEEEEEEeCCCC--CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccCCHHHH
Confidence 499999999996531 238999999999999999999999999999999999999 9999999999874
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCCcc----CCCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVY----APSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~~~----~~~LSgG~kq 215 (313)
++.++|||||++.+. -|+++|+... .....+.+.++++..+. +.+.. ...|||||||
T Consensus 1383 R~~I~iVpQdp~LF~---gTIreNIdp~-------~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQ 1452 (1560)
T PTZ00243 1383 RRQFSMIPQDPVLFD---GTVRQNVDPF-------LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQ 1452 (1560)
T ss_pred HhcceEECCCCcccc---ccHHHHhCcc-------cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHH
Confidence 356999999987654 4999999532 12344667777776552 22322 2479999999
Q ss_pred cchhhhhhccC-ceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHH
Q 021362 216 PVEDDILVGLQ-HKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~ia~al~~~-ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~ 282 (313)
|++||||++.+ +++|++|+++.-+|. .+.+.|++.++. .|+|+|.++.+.. ||+ |++++.|++++++
T Consensus 1453 rLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243 1453 LMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELV 1532 (1560)
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999995 899999999999999 455556655432 4799999999988 666 9999999999997
Q ss_pred H
Q 021362 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 1533 ~ 1533 (1560)
T PTZ00243 1533 M 1533 (1560)
T ss_pred h
Confidence 5
No 334
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.96 E-value=4.5e-29 Score=273.04 Aligned_cols=193 Identities=17% Similarity=0.141 Sum_probs=157.6
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
-|+++||+++|+... ..+|+|+||+|++||.+||+|++|||||||+++|.|++. |++|+|.++|.+.
T Consensus 1284 ~I~f~nVsf~Y~~~~--~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~---~~~G~I~IdG~dI~~i~~~~L 1358 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDL--DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE---SAEGEIIIDGLNIAKIGLHDL 1358 (1522)
T ss_pred cEEEEEEEEEeCCCC--cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc---CCCCeEEECCEEccccCHHHH
Confidence 499999999997531 139999999999999999999999999999999999999 9999999999874
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccC----CCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~LSgG~kq 215 (313)
++.+++|+||++.+. -|+++|+... + ....+.+.++++..+ .+.+..+ ..|||||||
T Consensus 1359 R~~i~iVpQdp~LF~---gTIr~NLdp~----~---~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQ 1428 (1522)
T TIGR00957 1359 RFKITIIPQDPVLFS---GSLRMNLDPF----S---QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQ 1428 (1522)
T ss_pred HhcCeEECCCCcccC---ccHHHHcCcc----c---CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHH
Confidence 346999999987654 3999999531 1 223455666666554 1233333 379999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||||++.++++|++|+++.-+|. .+.+.|++.++. +|+|+|.++.+.. ||+ |++++.|+++++++
T Consensus 1429 rl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1429 LVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999 456666665443 4799999999998 766 99999999999875
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 1509 ~ 1509 (1522)
T TIGR00957 1509 Q 1509 (1522)
T ss_pred C
Confidence 3
No 335
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.96 E-value=4e-29 Score=271.53 Aligned_cols=194 Identities=13% Similarity=0.124 Sum_probs=153.6
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC--------------------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-------------------- 136 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-------------------- 136 (313)
-|+++||+++|.+.. ..++|+|+||+|++|+.+||+||||||||||+++|.|++. |
T Consensus 1165 ~I~f~nVsF~Y~~~~-~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~yd---p~~~~~~~~~~~~~~~~~~~~ 1240 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRP-NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYD---LKNDHHIVFKNEHTNDMTNEQ 1240 (1466)
T ss_pred eEEEEEEEEECCCCC-CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCC---Ccccccccccccccccccccc
Confidence 499999999997432 2239999999999999999999999999999999999998 7
Q ss_pred ----------------------------------CCceeecCCCCC--------CCeEEEEecCCCCCCcccCCcccChH
Q 021362 137 ----------------------------------QKASSFDSQVKP--------PDVATVLPMDGFHLYLSQLDAMEDPK 174 (313)
Q Consensus 137 ----------------------------------~~G~i~~~g~~~--------~~~i~~v~qd~~~~~~~~ltv~e~~~ 174 (313)
++|+|.++|.+. ++.++||+|+++.+. .|++||+.
T Consensus 1241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~---gTIreNI~ 1317 (1466)
T PTZ00265 1241 DYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN---MSIYENIK 1317 (1466)
T ss_pred ccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc---ccHHHHHh
Confidence 699999999874 346999999987654 69999998
Q ss_pred HHHHhcCCCCCccHHHHHHHHHHhh---------cCCCcc----CCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh
Q 021362 175 EAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (313)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE 241 (313)
++. +. ...+.+.++++..+ .+.+.. ...||||||||++||||+++++++|++|+++.-||.
T Consensus 1318 ~g~-----~~-at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~ 1391 (1466)
T PTZ00265 1318 FGK-----ED-ATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDS 1391 (1466)
T ss_pred cCC-----CC-CCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH
Confidence 752 22 23344555555433 222332 337999999999999999999999999999999998
Q ss_pred ----hhHHHHHhhc---c-ceEEEEcChHHHHH--HHh--------hccc-ccCCchHHHH
Q 021362 242 ----GVWKDVSSMF---D-EKWFIEVDLDTAMQ--RVL--------KRHI-STGKPPDVAK 283 (313)
Q Consensus 242 ----~~~~~l~~l~---~-~~i~vtHd~~~~~~--rv~--------griv-~~G~~~ev~~ 283 (313)
.+.+.|.++. + ..|+|+|.+..+.. +++ |+++ +.|+.+|++.
T Consensus 1392 ~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1392 NSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 4566666663 2 35799999999887 554 3655 7899988875
No 336
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=4.2e-29 Score=258.55 Aligned_cols=195 Identities=15% Similarity=0.128 Sum_probs=155.9
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
-|+++||++.|..++ ++.+|+|+||+|++|+.++|+|||||||||.+.+|-.++. |++|.|.++|.+.+
T Consensus 987 ~I~~~~V~F~YPsRP-~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd---p~~G~V~IDg~dik~lnl~~L 1062 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRP-DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD---PDAGKVKIDGVDIKDLNLKWL 1062 (1228)
T ss_pred EEEEeeeEeeCCCCC-CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCcccccCCHHHH
Confidence 399999999999765 6679999999999999999999999999999999999999 99999999998843
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCcc----CCCCCCcCCC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~LSgG~kq 215 (313)
+.++.|.|+|.++. -|++||+.|+. .. -..+.+.++++.-. .+-+.+ -.+|||||||
T Consensus 1063 R~~i~lVsQEP~LF~---~TIrENI~YG~-----~~-vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQ 1133 (1228)
T KOG0055|consen 1063 RKQIGLVSQEPVLFN---GTIRENIAYGS-----EE-VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQ 1133 (1228)
T ss_pred HHhcceeccCchhhc---ccHHHHHhccC-----CC-CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHH
Confidence 46999999976554 59999998871 11 23445555554332 233443 3499999999
Q ss_pred cchhhhhhccCceEEEEcCCccccChhhHHHHHhhcc----c--eEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----E--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~----~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|+|||||++++|++|++|+.+.-||-+--+.+++..+ . .|+|.|-+..+.. .++ |++++.|+-++++.
T Consensus 1134 RIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1134 RIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred HHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHh
Confidence 9999998888888888888888888743333333333 2 5899999999988 333 99999999999977
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 1214 ~ 1214 (1228)
T KOG0055|consen 1214 K 1214 (1228)
T ss_pred C
Confidence 4
No 337
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.95 E-value=8.7e-29 Score=224.53 Aligned_cols=181 Identities=14% Similarity=0.035 Sum_probs=136.9
Q ss_pred ccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceee-----------cCCCCCC
Q 021362 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-----------DSQVKPP 149 (313)
Q Consensus 81 ~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~-----------~~g~~~~ 149 (313)
.+++++|+... .+|+|+|+ +++|++++|+||||||||||+++|+|+++ |++|+|+ ++|.+..
T Consensus 4 ~~~~~~y~~~~---~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~---p~~G~I~~~~~~~~~~~~~~g~~~~ 76 (255)
T cd03236 4 DEPVHRYGPNS---FKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLK---PNLGKFDDPPDWDEILDEFRGSELQ 76 (255)
T ss_pred cCcceeecCcc---hhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEeeccccchhhhhccCchhh
Confidence 47899997532 28999995 99999999999999999999999999999 9999996 6675531
Q ss_pred ----------CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcc
Q 021362 150 ----------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPV 217 (313)
Q Consensus 150 ----------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv 217 (313)
..+++++|+....+ .++.+++.+.. ........+.++++.++.. .+..+.+||+||+||+
T Consensus 77 ~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~i~~~l-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv 148 (255)
T cd03236 77 NYFTKLLEGDVKVIVKPQYVDLIP---KAVKGKVGELL-----KKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRV 148 (255)
T ss_pred hhhHHhhhcccceeeecchhccCc---hHHHHHHHHHh-----chhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 12567777633222 35556655432 1122345678888888743 3556779999999999
Q ss_pred hhhhhhccCceEEEEcCCccccChh----hHHHHHhhccc---eEEEEcChHHHHH---HHh---hcccccC
Q 021362 218 EDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDE---KWFIEVDLDTAMQ---RVL---KRHISTG 276 (313)
Q Consensus 218 ~ia~al~~~ar~Li~d~~~lllDE~----~~~~l~~l~~~---~i~vtHd~~~~~~---rv~---griv~~G 276 (313)
+||++++.+++++++|+|+..||.. +.+.|+++.++ .|++|||++.+.. +++ |++.+.|
T Consensus 149 ~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~~~~~~~~ 220 (255)
T cd03236 149 AIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLYGEPGAYG 220 (255)
T ss_pred HHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEECCCCCcce
Confidence 9999999999999999999999993 55566655432 4799999999875 444 7666543
No 338
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.95 E-value=1.2e-28 Score=249.33 Aligned_cols=185 Identities=12% Similarity=0.068 Sum_probs=148.8
Q ss_pred cccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC---CceeecCCCCC-----CCeEEEEecCCCCCCcc
Q 021362 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASSFDSQVKP-----PDVATVLPMDGFHLYLS 165 (313)
Q Consensus 94 ~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~---~G~i~~~g~~~-----~~~i~~v~qd~~~~~~~ 165 (313)
..+|+|+|+++++||+++|+||||||||||+++|+|..+ |. +|+|.++|.+. ++.++|++|++.+++
T Consensus 38 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~---~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~-- 112 (617)
T TIGR00955 38 KHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSP---KGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIP-- 112 (617)
T ss_pred cccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCcceeEEEECCEECCHHHHhhhceeeccccccCc--
Confidence 349999999999999999999999999999999999987 64 79999999764 346899999976554
Q ss_pred cCCcccChHHHHHhcCC---CCCccHHHHHHHHHHhhc--CCCccCC------CCCCcCCCcchhhhhhccCceEEEEcC
Q 021362 166 QLDAMEDPKEAHARRGA---PWTFNPLLLLNCLKNLRN--QGSVYAP------SFDHGVGDPVEDDILVGLQHKVVIVDG 234 (313)
Q Consensus 166 ~ltv~e~~~~~~~~~~~---~~~~~~~~~~~~l~~l~~--~~~~~~~------~LSgG~kqRv~ia~al~~~ar~Li~d~ 234 (313)
.+||+||+.+....+.. ...+..+++.++++.++. ..+..+. .||||||||++||++++.+++++++|+
T Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDE 192 (617)
T TIGR00955 113 TLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDE 192 (617)
T ss_pred cCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeC
Confidence 48999999998764421 112334567888888874 3355544 599999999999999999999999999
Q ss_pred CccccCh----hhHHHHHhhccc---eEEEEcChH-HHHH---HHh----hcccccCCchHHHH
Q 021362 235 NYLFLDG----GVWKDVSSMFDE---KWFIEVDLD-TAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 235 ~~lllDE----~~~~~l~~l~~~---~i~vtHd~~-~~~~---rv~----griv~~G~~~ev~~ 283 (313)
|+..||. .+++.|+++.+. .|+++|++. ++.. +++ |+++..|++.++..
T Consensus 193 PtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 193 PTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred CCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence 9999999 566666666543 469999985 4444 555 99999999988754
No 339
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.95 E-value=9.3e-29 Score=268.66 Aligned_cols=186 Identities=15% Similarity=0.102 Sum_probs=143.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecC-CCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS-QVKP------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~-g~~~------- 148 (313)
-|+++||++.|+... ...+|+|+||+|++|++++|+||||||||||+++|+|++. |++|+|.++ |.+.
T Consensus 382 ~I~~~nVsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~i~~g~~i~~~~~~~ 457 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRK-DVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD---PTEGDIIINDSHNLKDINLKW 457 (1466)
T ss_pred cEEEEEEEEEcCCCC-CCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc---CCCCeEEEeCCcchhhCCHHH
Confidence 499999999998532 2349999999999999999999999999999999999999 999999994 5542
Q ss_pred -CCeEEEEecCCCCCCcccCCcccChHHHHHhc-C---------C-----------------------------------
Q 021362 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-G---------A----------------------------------- 182 (313)
Q Consensus 149 -~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~-~---------~----------------------------------- 182 (313)
++.++||+|+++.+. .|++||+.++.... + .
T Consensus 458 lr~~Ig~V~Q~~~LF~---~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (1466)
T PTZ00265 458 WRSKIGVVSQDPLLFS---NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNEL 534 (1466)
T ss_pred HHHhccEecccccchh---ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhh
Confidence 245999999976543 59999998853100 0 0
Q ss_pred ------CCCccHHHHHHHHHHhhc---------CC----CccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh--
Q 021362 183 ------PWTFNPLLLLNCLKNLRN---------QG----SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG-- 241 (313)
Q Consensus 183 ------~~~~~~~~~~~~l~~l~~---------~~----~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE-- 241 (313)
......+.+.++++.++. +. .....+||||||||++||+|++.++++|++|+++.-||.
T Consensus 535 l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~s 614 (1466)
T PTZ00265 535 IEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKS 614 (1466)
T ss_pred hhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 001223456666665541 11 234569999999999999999999999999999999999
Q ss_pred --hhHHHHHhhcc----ceEEEEcChHHHHH--HHh
Q 021362 242 --GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL 269 (313)
Q Consensus 242 --~~~~~l~~l~~----~~i~vtHd~~~~~~--rv~ 269 (313)
.+.+.|.++.+ ..|+|+|+++.+.. +++
T Consensus 615 e~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Ii 650 (1466)
T PTZ00265 615 EYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIF 650 (1466)
T ss_pred HHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEE
Confidence 56666666642 24799999998865 544
No 340
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.95 E-value=1.8e-28 Score=249.46 Aligned_cols=178 Identities=11% Similarity=-0.011 Sum_probs=139.4
Q ss_pred cEEEEccceEEcc-ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEE
Q 021362 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 76 ~~l~~~~l~~~y~-~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~ 154 (313)
.+|+++|+++.|+ +.. +|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++ ...++|
T Consensus 450 ~~i~~~nv~~~~~~~~~----il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~---~~~G~i~~~~---~~~i~~ 519 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDV----LIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP---VYGGRLTKPA---KGKLFY 519 (659)
T ss_pred CeEEEEeeEEECCCCCe----eeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEeecC---CCcEEE
Confidence 3699999999995 334 9999999999999999999999999999999999998 9999998864 356999
Q ss_pred EecCCCCCCcccCCcccChHHHHHhcCCC-CCccHHHHHHHHHHhhcC--CCc---------cCCCCCCcCCCcchhhhh
Q 021362 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ--GSV---------YAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 155 v~qd~~~~~~~~ltv~e~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~--~~~---------~~~~LSgG~kqRv~ia~a 222 (313)
++|+++.+. .|++||+.++....+.. .....+++.++++.++.. .++ ...+||||||||++||++
T Consensus 520 v~Q~~~l~~---~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARa 596 (659)
T TIGR00954 520 VPQRPYMTL---GTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARL 596 (659)
T ss_pred ECCCCCCCC---cCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHH
Confidence 999976433 39999998753221111 112345667778777632 111 235899999999999999
Q ss_pred hccCceEEEEcCCccccChhhHHHHHhhcc----ceEEEEcChHHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
++.+++++++|+++..||....+.+.+... ..++|||+++++..
T Consensus 597 l~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~~ 644 (659)
T TIGR00954 597 FYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWKY 644 (659)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHHh
Confidence 999999999999999999955554444432 35799999998644
No 341
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.95 E-value=1.3e-28 Score=246.35 Aligned_cols=175 Identities=14% Similarity=-0.011 Sum_probs=136.1
Q ss_pred EEEEccceEEcccccc-ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~-~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
-|+++|+++.|++... ...+|+|+||++++|++++|+||||||||||+++|+|++. |++|+|.++|.+..
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~---p~~G~i~~~g~~i~~~~~~~ 413 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI---PQEGEILLDGAAVSADSRDD 413 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence 4999999999975311 1238999999999999999999999999999999999999 99999999997643
Q ss_pred --CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCC--------ccCCCCCCcCCCcchh
Q 021362 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS--------VYAPSFDHGVGDPVED 219 (313)
Q Consensus 150 --~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~--------~~~~~LSgG~kqRv~i 219 (313)
+.++|++||++.+. -|+.+|.. + ....+++.++++.++.... .....||||||||++|
T Consensus 414 ~~~~i~~v~q~~~lf~---~ti~~n~~--------~-~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlal 481 (555)
T TIGR01194 414 YRDLFSAIFADFHLFD---DLIGPDEG--------E-HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLAL 481 (555)
T ss_pred HHhhCcEEccChhhhh---hhhhcccc--------c-chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHH
Confidence 45899999976543 36777731 1 2234566777777763221 1235899999999999
Q ss_pred hhhhccCceEEEEcCCccccChhhHHHHH-----hhc---cceEEEEcChHHHHH
Q 021362 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVS-----SMF---DEKWFIEVDLDTAMQ 266 (313)
Q Consensus 220 a~al~~~ar~Li~d~~~lllDE~~~~~l~-----~l~---~~~i~vtHd~~~~~~ 266 (313)
||+++.++++|++|+++..||++..+.+. .+. ...++|||+++....
T Consensus 482 aRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~ 536 (555)
T TIGR01194 482 ICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFEL 536 (555)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHh
Confidence 99999999999999999999995444332 221 224799999987654
No 342
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.4e-28 Score=207.63 Aligned_cols=176 Identities=16% Similarity=0.111 Sum_probs=141.9
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCe-----
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV----- 151 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~----- 151 (313)
+++.+||+..-+... ++.++||++.+||++-|.||||||||||+|+|+|+++ |++|+|+++|......
T Consensus 2 ~L~a~~L~~~R~e~~----lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~---p~~G~v~~~~~~i~~~~~~~~ 74 (209)
T COG4133 2 MLEAENLSCERGERT----LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR---PDAGEVYWQGEPIQNVRESYH 74 (209)
T ss_pred cchhhhhhhccCcce----eecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC---CCCCeEEecCCCCccchhhHH
Confidence 578899999988887 9999999999999999999999999999999999999 9999999998664321
Q ss_pred --EEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCc
Q 021362 152 --ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 152 --i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~a 227 (313)
.-|+--.+- ....+|++||+.|....++. .....+.++++.+++ ..+.++.+||-|||+||+||+..+.++
T Consensus 75 ~~l~yLGH~~g--iK~eLTa~ENL~F~~~~~~~---~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~ 149 (209)
T COG4133 75 QALLYLGHQPG--IKTELTALENLHFWQRFHGS---GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPA 149 (209)
T ss_pred HHHHHhhcccc--ccchhhHHHHHHHHHHHhCC---CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCC
Confidence 223322222 23359999999999887664 235667888999994 456778899999999999999999999
Q ss_pred eEEEEcCCccccChhhHHHHHhhccc-------eEEEEcChHHH
Q 021362 228 KVVIVDGNYLFLDGGVWKDVSSMFDE-------KWFIEVDLDTA 264 (313)
Q Consensus 228 r~Li~d~~~lllDE~~~~~l~~l~~~-------~i~vtHd~~~~ 264 (313)
.+.|+|+|+.-+|.+-...+..++.. ++..||..--.
T Consensus 150 pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~ 193 (209)
T COG4133 150 PLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPI 193 (209)
T ss_pred CceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCC
Confidence 99999999999999655555555432 25788876544
No 343
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=6.5e-28 Score=237.35 Aligned_cols=197 Identities=13% Similarity=0.054 Sum_probs=152.1
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEE
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~ 154 (313)
|.+|.++++++.|+++. +|+++||++.+|+.+||+|+||||||||||+|+|.+. |++|+|...+ ..+++|
T Consensus 1 m~~i~~~~ls~~~g~~~----l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~---~~~G~i~~~~---~~~v~~ 70 (530)
T COG0488 1 MSMITLENLSLAYGDRP----LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE---PDSGEVTRPK---GLRVGY 70 (530)
T ss_pred CceEEEeeeEEeeCCce----eecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc---CCCCeEeecC---CceEEE
Confidence 56899999999999888 9999999999999999999999999999999999999 9999998764 246999
Q ss_pred EecCCCCCCcccCCcccChHHHHHhc------------------------------CCCCCccHHHHHHHHHHhhcCC-C
Q 021362 155 LPMDGFHLYLSQLDAMEDPKEAHARR------------------------------GAPWTFNPLLLLNCLKNLRNQG-S 203 (313)
Q Consensus 155 v~qd~~~~~~~~ltv~e~~~~~~~~~------------------------------~~~~~~~~~~~~~~l~~l~~~~-~ 203 (313)
+.|+..... ..|+.+.+....... .........++..+|..++... +
T Consensus 71 l~Q~~~~~~--~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~ 148 (530)
T COG0488 71 LSQEPPLDP--EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDED 148 (530)
T ss_pred eCCCCCcCC--CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCccc
Confidence 999966433 357777655432100 0000112345566777777433 6
Q ss_pred ccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcc
Q 021362 204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRH 272 (313)
Q Consensus 204 ~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----gri 272 (313)
+++.+||||||.||++|++|..+|++|++|+|+.-||-+.+..|.++.. ..|+||||.++... +++ |++
T Consensus 149 ~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l 228 (530)
T COG0488 149 RPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKL 228 (530)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCce
Confidence 7888999999999999999999999999999999999976666666653 35899999999877 555 555
Q ss_pred cc-cCCchHHHH
Q 021362 273 IS-TGKPPDVAK 283 (313)
Q Consensus 273 v~-~G~~~ev~~ 283 (313)
.. .|.-+...+
T Consensus 229 ~~y~Gny~~~~~ 240 (530)
T COG0488 229 TPYKGNYSSYLE 240 (530)
T ss_pred eEecCCHHHHHH
Confidence 54 455444443
No 344
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.5e-28 Score=232.11 Aligned_cols=193 Identities=18% Similarity=0.182 Sum_probs=147.7
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
-|+++|+++.|.... ++|+||||++.+|+.++|+||||+||||++|+|..++. .++|.|.++|++++
T Consensus 537 ~i~fsnvtF~Y~p~k---~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd---v~sGsI~iDgqdIrnvt~~SL 610 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPGK---PVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD---VNSGSITIDGQDIRNVTQSSL 610 (790)
T ss_pred eEEEEEeEEecCCCC---ceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh---ccCceEEEcCchHHHHHHHHH
Confidence 599999999997533 39999999999999999999999999999999999999 99999999999843
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHH------Hhh---cCCCc----cCCCCCCcCCC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK------NLR---NQGSV----YAPSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~------~l~---~~~~~----~~~~LSgG~kq 215 (313)
+.||+||||...+. -|+..|+.++ .+.+.++ .+.++.+ ++- ++-+. +.-.|||||||
T Consensus 611 Rs~IGVVPQDtvLFN---dTI~yNIrya-----k~~Asne-evyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQ 681 (790)
T KOG0056|consen 611 RSSIGVVPQDTVLFN---DTILYNIRYA-----KPSASNE-EVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQ 681 (790)
T ss_pred HHhcCcccCcceeec---ceeeeheeec-----CCCCChH-HHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchh
Confidence 46999999966554 3899998764 3333222 2222222 221 11122 23389999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH-H-Hh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ-R-VL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~-r-v~----griv~~G~~~ev~~ 283 (313)
||+||+++...+.++++|+.+.-||- .+...+.+++.. .|+|.|.+..+.. . ++ |+|+++|+-+|++.
T Consensus 682 RVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 682 RVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred hHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHh
Confidence 99997777777777777777777776 566667777653 5899999999877 2 22 99999999999876
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 762 r 762 (790)
T KOG0056|consen 762 R 762 (790)
T ss_pred c
Confidence 5
No 345
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.95 E-value=3.7e-28 Score=253.76 Aligned_cols=200 Identities=16% Similarity=0.145 Sum_probs=178.1
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
..+.++|++|.|+.... +++++||.|++||+.|++|+|||||||++++|.|..+ |++|+++++|.+..
T Consensus 563 ~~~~~~~L~k~y~~~~~---Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~---~t~G~a~i~g~~i~~~~~~~ 636 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG---AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK---PTSGEALIKGHDITVSTDFQ 636 (885)
T ss_pred ceEEEcceeeeecchhh---hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc---CCcceEEEecCccccccchh
Confidence 46899999999987653 8999999999999999999999999999999999999 99999999886632
Q ss_pred ---CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhc
Q 021362 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 150 ---~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
+.+||+||.+..+. .+|.+|++.+..+.+|.++....+.+..+++.++ ...++.++.||||+|+|+.+|.|++
T Consensus 637 ~~~~~iGyCPQ~d~l~~--~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aiali 714 (885)
T KOG0059|consen 637 QVRKQLGYCPQFDALWE--ELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALI 714 (885)
T ss_pred hhhhhcccCCchhhhhh--hccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHh
Confidence 34999999966544 5999999999999999988777777899999988 4567778899999999999999999
Q ss_pred cCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
.++.++++|+|...+|+ ++|+.|.++.+. .++.||.|+++.. |+. |++..-|.++++-.
T Consensus 715 g~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKs 787 (885)
T KOG0059|consen 715 GDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKS 787 (885)
T ss_pred cCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHh
Confidence 99999999999999998 789999988874 4799999999998 766 99999999988863
No 346
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.95 E-value=3.7e-28 Score=265.19 Aligned_cols=191 Identities=14% Similarity=0.117 Sum_probs=156.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
-|+++||+++|+.. ...+|+|+||+|++||.+||+|++|||||||+++|.|++ +++|+|.++|.+.
T Consensus 1217 ~I~f~nVs~~Y~~~--~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~----~~~G~I~IdG~di~~i~~~~l 1290 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEA--GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL----STEGEIQIDGVSWNSVTLQTW 1290 (1490)
T ss_pred eEEEEEEEEEeCCC--CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc----CCCcEEEECCEEcccCCHHHH
Confidence 49999999999752 123999999999999999999999999999999999998 5789999999774
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCCccC----CCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVYA----PSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~~~~----~~LSgG~kq 215 (313)
++.++|||||++.+. -|+++|+... .....+.+.++|+.++. +.+..+ ..|||||||
T Consensus 1291 R~~is~IpQdp~LF~---GTIR~NLdp~-------~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQ 1360 (1490)
T TIGR01271 1291 RKAFGVIPQKVFIFS---GTFRKNLDPY-------EQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQ 1360 (1490)
T ss_pred HhceEEEeCCCccCc---cCHHHHhCcc-------cCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHH
Confidence 346999999987655 4999999532 12345667777776652 222222 279999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||||++.++++|++|+++.-+|. .+.+.|++.++. +|+|+|.++.+.. ||+ |++++.|+|.++++
T Consensus 1361 rL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1361 LMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred HHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999998 566666666543 4799999999988 666 99999999999874
No 347
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.95 E-value=4.9e-28 Score=207.79 Aligned_cols=126 Identities=15% Similarity=0.136 Sum_probs=108.8
Q ss_pred ccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCC
Q 021362 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF 160 (313)
Q Consensus 81 ~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~ 160 (313)
.|++|.|++.. ++++ +|++++||+++|+||||||||||+|+|+|+++ |++|+|.++|. .++|++|+..
T Consensus 4 ~~l~~~~~~~~----~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~----~i~~~~q~~~ 71 (177)
T cd03222 4 PDCVKRYGVFF----LLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGI----TPVYKPQYID 71 (177)
T ss_pred CCeEEEECCEE----EEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCE----EEEEEcccCC
Confidence 58999998876 8888 49999999999999999999999999999999 99999999874 3677776521
Q ss_pred CCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccC
Q 021362 161 HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240 (313)
Q Consensus 161 ~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllD 240 (313)
||+|||||+++|++++.+++++++|+|+..||
T Consensus 72 ------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD 103 (177)
T cd03222 72 ------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103 (177)
T ss_pred ------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 99999999999999999999999999999999
Q ss_pred h----hhHHHHHhhcc----ceEEEEcChHHHHH
Q 021362 241 G----GVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 241 E----~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
. .+.+.|.++.+ ..+++|||++++..
T Consensus 104 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 104 IEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 9 34555555532 24799999999875
No 348
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.95 E-value=1.8e-27 Score=226.21 Aligned_cols=195 Identities=16% Similarity=0.105 Sum_probs=153.5
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
.|.+++++..=.+ .+.++|+++||++.+||.+||+||||||||||.|+|.|..+ |.+|.|++||-+.
T Consensus 334 ~L~Ve~l~~~PPg--~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~---p~~G~VRLDga~l~qWd~e~l 408 (580)
T COG4618 334 ALSVERLTAAPPG--QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP---PTSGSVRLDGADLRQWDREQL 408 (580)
T ss_pred eeeEeeeeecCCC--CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccc---cCCCcEEecchhhhcCCHHHh
Confidence 6999999886544 23459999999999999999999999999999999999999 9999999999653
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHH---------HHHhhcCCCccCC----CCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---------LKNLRNQGSVYAP----SFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~---------l~~l~~~~~~~~~----~LSgG~kq 215 (313)
.+.+||+|||-..+. =|+.||+.-. + .+.+.+++.+. +-++-.+-+..+. .|||||||
T Consensus 409 G~hiGYLPQdVeLF~---GTIaeNIaRf----~--~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQ 479 (580)
T COG4618 409 GRHIGYLPQDVELFD---GTIAENIARF----G--EEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQ 479 (580)
T ss_pred ccccCcCcccceecC---CcHHHHHHhc----c--ccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHH
Confidence 356999999965544 4999999643 1 22334444333 3233333344333 99999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH--HHh----hcccccCCchHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~--rv~----griv~~G~~~ev~ 282 (313)
|+++|+|+-.+++.+++|||=.-||+ .+.+.|.+...+ .|+|+|-+..... +++ |++-..|+.+|++
T Consensus 480 RIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVL 559 (580)
T COG4618 480 RIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVL 559 (580)
T ss_pred HHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHH
Confidence 99999999999999999999999998 455556665544 4699999998877 555 9999999999998
Q ss_pred HHH
Q 021362 283 KWR 285 (313)
Q Consensus 283 ~~~ 285 (313)
.+-
T Consensus 560 a~~ 562 (580)
T COG4618 560 AKV 562 (580)
T ss_pred HHh
Confidence 874
No 349
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.9e-27 Score=197.83 Aligned_cols=184 Identities=17% Similarity=0.125 Sum_probs=144.9
Q ss_pred EEEEccceEEccccc---cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC------
Q 021362 77 VVEARCMDEVYDALA---QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------ 147 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~---~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~------ 147 (313)
.|.++|++|+|--.. -..++|+++||+++.||+++|-||||+|||||+|+|.|.+. |++|+|++....
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~---~d~G~I~v~H~g~~vdl~ 80 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL---PDEGQILVRHEGEWVDLV 80 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC---CCCceEEEEeCcchhhhh
Confidence 589999999994221 23569999999999999999999999999999999999999 999999875432
Q ss_pred ----------CCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCC---CccCCCCCCcCC
Q 021362 148 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVG 214 (313)
Q Consensus 148 ----------~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~~~~~LSgG~k 214 (313)
+.+.+|||+|.--..+ ..+..|-++.++...|.+......++..+|.++.... ...+.++|||||
T Consensus 81 ~a~pr~vl~vRr~TiGyVSQFLRviP--RV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEq 158 (235)
T COG4778 81 TAEPREVLEVRRTTIGYVSQFLRVIP--RVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQ 158 (235)
T ss_pred ccChHHHHHHHHhhhHHHHHHHHhcc--CcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchh
Confidence 2345899999743333 3677888888888889888878888999999998443 335559999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccChh----hHHHHHhhccce---EEEEcChHHHH
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDEK---WFIEVDLDTAM 265 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE~----~~~~l~~l~~~~---i~vtHd~~~~~ 265 (313)
|||.||+.++.+..+|++|+|+.-||.. +.+.|.+-...+ +=|=||.+...
T Consensus 159 QRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre 216 (235)
T COG4778 159 QRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVRE 216 (235)
T ss_pred eehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHH
Confidence 9999999999999999999999999983 444444443332 34558866543
No 350
>PLN03140 ABC transporter G family member; Provisional
Probab=99.94 E-value=1.4e-27 Score=258.86 Aligned_cols=208 Identities=14% Similarity=0.061 Sum_probs=157.3
Q ss_pred EEEEccceEEccccc---------cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC
Q 021362 77 VVEARCMDEVYDALA---------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~---------~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~ 147 (313)
.+..+||++.+.... ++..+|+|+|+++++|++++|+||||||||||+++|+|+.+. -+.+|+|.++|.+
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~-g~~~G~I~inG~~ 945 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYIEGDIRISGFP 945 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCC-CcccceEEECCcc
Confidence 588999998874211 223599999999999999999999999999999999998740 0268999999976
Q ss_pred CC-----CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC----CccHHHHHHHHHHhhcC--CCccC-----CCCCC
Q 021362 148 PP-----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW----TFNPLLLLNCLKNLRNQ--GSVYA-----PSFDH 211 (313)
Q Consensus 148 ~~-----~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~----~~~~~~~~~~l~~l~~~--~~~~~-----~~LSg 211 (313)
.. +.++|++|++.+++ .+||+|++.+....+ .+. .+..+.+.++++.++.. .+..+ ..|||
T Consensus 946 ~~~~~~~~~igyv~Q~d~~~~--~lTV~E~L~~~a~lr-~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSg 1022 (1470)
T PLN03140 946 KKQETFARISGYCEQNDIHSP--QVTVRESLIYSAFLR-LPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLST 1022 (1470)
T ss_pred CChHHhhhheEEEccccccCC--CCcHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCH
Confidence 42 45899999976554 489999999876443 221 12234577888888742 34443 48999
Q ss_pred cCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHH-HHH---HHh-----hccccc
Q 021362 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDT-AMQ---RVL-----KRHIST 275 (313)
Q Consensus 212 G~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~-~~~---rv~-----griv~~ 275 (313)
|||||++||++++.++++|++|+|+..||. .+++.|+++.++ +|+++|+++. +.. +++ |+++..
T Consensus 1023 GerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~ 1102 (1470)
T PLN03140 1023 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYS 1102 (1470)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEE
Confidence 999999999999999999999999999999 566666666543 4799999984 333 444 688888
Q ss_pred CCch---HHHHHHHHh
Q 021362 276 GKPP---DVAKWRIEY 288 (313)
Q Consensus 276 G~~~---ev~~~~~~~ 288 (313)
|++. +-+.++++.
T Consensus 1103 G~~~~~~~~~~~yF~~ 1118 (1470)
T PLN03140 1103 GPLGRNSHKIIEYFEA 1118 (1470)
T ss_pred CCcccccccHHHHHHh
Confidence 8864 233444554
No 351
>PLN03130 ABC transporter C family member; Provisional
Probab=99.94 E-value=4.7e-27 Score=257.48 Aligned_cols=188 Identities=17% Similarity=0.199 Sum_probs=149.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCC-ceeecCCCCCCCeEEEE
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-ASSFDSQVKPPDVATVL 155 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~-G~i~~~g~~~~~~i~~v 155 (313)
.|+++|+++.|+... ...+|+|+||+|++|+.++|+||+|||||||+++|.|+++ |++ |+|.+. ..++|+
T Consensus 614 ~I~~~nvsf~y~~~~-~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~GG~I~l~-----~~Iayv 684 (1622)
T PLN03130 614 AISIKNGYFSWDSKA-ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP---PRSDASVVIR-----GTVAYV 684 (1622)
T ss_pred ceEEEeeEEEccCCC-CCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc---cCCCceEEEc-----CeEEEE
Confidence 599999999997421 1238999999999999999999999999999999999999 999 899864 469999
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCcc----CCCCCCcCCCcchhhhh
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHGVGDPVEDDIL 222 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~LSgG~kqRv~ia~a 222 (313)
+|+++.+. -|++||+.++. + .+.+++.++++..+ .+.+.. ...||||||||++||||
T Consensus 685 ~Q~p~Lfn---gTIreNI~fg~-----~--~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARA 754 (1622)
T PLN03130 685 PQVSWIFN---ATVRDNILFGS-----P--FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARA 754 (1622)
T ss_pred cCccccCC---CCHHHHHhCCC-----c--ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHH
Confidence 99987654 59999998752 2 24555666555443 222332 33799999999999999
Q ss_pred hccCceEEEEcCCccccChhhHHHH-----Hhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDGGVWKDV-----SSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE~~~~~l-----~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
+..+++++++|+++.-+|.+.-+.+ ....+ ..|+|||+++.+.. +++ |++++.|+.+++..
T Consensus 755 ly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 755 VYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred HhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999998543332 22222 35799999988777 665 99999999988854
No 352
>PLN03140 ABC transporter G family member; Provisional
Probab=99.94 E-value=7.1e-27 Score=253.32 Aligned_cols=185 Identities=14% Similarity=0.139 Sum_probs=146.8
Q ss_pred cccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC---CceeecCCCCC-----CCeEEEEecCCCCCCcc
Q 021362 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASSFDSQVKP-----PDVATVLPMDGFHLYLS 165 (313)
Q Consensus 94 ~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~---~G~i~~~g~~~-----~~~i~~v~qd~~~~~~~ 165 (313)
..+|+|+|+.|++|++++|+||||||||||||+|+|+++ |+ +|+|.++|.+. ++.++|++|++.+++
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~---~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~-- 252 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD---PSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVG-- 252 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC---CCCcceeEEEECCEechhhcccceeEEecccccCCC--
Confidence 458999999999999999999999999999999999998 88 99999999753 356899999976655
Q ss_pred cCCcccChHHHHHhcCCCC----------Cc---------c---------------HHHHHHHHHHhhcCC-------Cc
Q 021362 166 QLDAMEDPKEAHARRGAPW----------TF---------N---------------PLLLLNCLKNLRNQG-------SV 204 (313)
Q Consensus 166 ~ltv~e~~~~~~~~~~~~~----------~~---------~---------------~~~~~~~l~~l~~~~-------~~ 204 (313)
.+||+|++.+....++... .+ + ...+..+++.+|... +.
T Consensus 253 ~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~ 332 (1470)
T PLN03140 253 VMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDE 332 (1470)
T ss_pred cCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCc
Confidence 4999999999876543211 00 0 012356777887432 44
Q ss_pred cCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcCh-HHHHH---HHh---
Q 021362 205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDL-DTAMQ---RVL--- 269 (313)
Q Consensus 205 ~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~-~~~~~---rv~--- 269 (313)
.+..|||||||||+||++++.+++++++|+++..||. ++.+.|+++.+ ..++++|++ +++.. +++
T Consensus 333 ~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~ 412 (1470)
T PLN03140 333 MIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLS 412 (1470)
T ss_pred cccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEee
Confidence 6679999999999999999999999999999999999 66677777643 236888986 45544 555
Q ss_pred -hcccccCCchHHHH
Q 021362 270 -KRHISTGKPPDVAK 283 (313)
Q Consensus 270 -griv~~G~~~ev~~ 283 (313)
|+++..|+++++..
T Consensus 413 ~G~ivy~G~~~~~~~ 427 (1470)
T PLN03140 413 EGQIVYQGPRDHILE 427 (1470)
T ss_pred CceEEEeCCHHHHHH
Confidence 99999999888754
No 353
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.94 E-value=5.4e-27 Score=254.46 Aligned_cols=188 Identities=12% Similarity=0.028 Sum_probs=145.4
Q ss_pred cccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc-CCCCceeecCCCCC-------CCeEEEEecCCCCCCcc
Q 021362 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKASSFDSQVKP-------PDVATVLPMDGFHLYLS 165 (313)
Q Consensus 94 ~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~-~p~~G~i~~~g~~~-------~~~i~~v~qd~~~~~~~ 165 (313)
..+|+|+|+++++||+++|+||||||||||+|+|+|+.... .|++|+|.++|.+. ++.++|++|++.+++
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~-- 151 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP-- 151 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC--
Confidence 34999999999999999999999999999999999986211 17999999999653 234899999976655
Q ss_pred cCCcccChHHHHHhcC-------CCCCccHHH-HHHHHHHhhcC--CC-----ccCCCCCCcCCCcchhhhhhccCceEE
Q 021362 166 QLDAMEDPKEAHARRG-------APWTFNPLL-LLNCLKNLRNQ--GS-----VYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 166 ~ltv~e~~~~~~~~~~-------~~~~~~~~~-~~~~l~~l~~~--~~-----~~~~~LSgG~kqRv~ia~al~~~ar~L 230 (313)
.+||.|++.+....+. ....+..++ ..++++.++.. .+ ..+..|||||||||+||++++.+++++
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 4899999999765432 111111122 34578888743 22 245689999999999999999999999
Q ss_pred EEcCCccccCh----hhHHHHHhhccc----eEEEEcCh-HHHHH---HHh----hcccccCCchHHHH
Q 021362 231 IVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDL-DTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 231 i~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~-~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++|+|+..||. .+.+.|+++.++ .++++|++ +.+.. +++ |+++..|++.++..
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~ 300 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQ 300 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHH
Confidence 99999999999 677777777542 36888996 45544 555 99999999887743
No 354
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.94 E-value=5.4e-27 Score=256.71 Aligned_cols=187 Identities=12% Similarity=0.112 Sum_probs=145.9
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEe
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~ 156 (313)
.|+++|+++.|++. ...+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++| .++|++
T Consensus 636 ~i~~~~~~~~~~~~--~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~---~~~G~i~~~g-----~i~yv~ 705 (1522)
T TIGR00957 636 SITVHNATFTWARD--LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVHMKG-----SVAYVP 705 (1522)
T ss_pred cEEEEEeEEEcCCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---cCCcEEEECC-----EEEEEc
Confidence 59999999999752 1238999999999999999999999999999999999999 9999999986 599999
Q ss_pred cCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHH------HHhh---cCC----CccCCCCCCcCCCcchhhhhh
Q 021362 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCL------KNLR---NQG----SVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 157 qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l------~~l~---~~~----~~~~~~LSgG~kqRv~ia~al 223 (313)
|++..+ + .|++||+.++.. .+.++..+++ +.++ .+. ..+..+||||||||++||||+
T Consensus 706 Q~~~l~-~--~Ti~eNI~~g~~-------~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl 775 (1522)
T TIGR00957 706 QQAWIQ-N--DSLRENILFGKA-------LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV 775 (1522)
T ss_pred CCcccc-C--CcHHHHhhcCCc-------cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHH
Confidence 997643 2 699999987521 1222222222 2222 121 234559999999999999999
Q ss_pred ccCceEEEEcCCccccChhhHHHHHhhc---------cceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMF---------DEKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE~~~~~l~~l~---------~~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
..+++++++|+++.-||.+..+.+.+.. ...|+|||+++.+.. +++ |++++.|+.+++..
T Consensus 776 ~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 776 YSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHh
Confidence 9999999999999999994443333221 124799999998877 555 89999999888764
No 355
>PRK13409 putative ATPase RIL; Provisional
Probab=99.94 E-value=4.2e-27 Score=236.13 Aligned_cols=169 Identities=14% Similarity=-0.012 Sum_probs=131.4
Q ss_pred ccceEEcccc-ccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceee-----------cCCCCC
Q 021362 81 RCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-----------DSQVKP 148 (313)
Q Consensus 81 ~~l~~~y~~~-~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~-----------~~g~~~ 148 (313)
+++++.||.+ . +|++++ .+++|+++||+||||||||||+|+|+|+++ |++|+|. ++|.+.
T Consensus 77 ~~~~~~yg~~~~----~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~---p~~G~i~~~~~~~~~~~~~~G~~l 148 (590)
T PRK13409 77 EEPVHRYGVNGF----KLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI---PNLGDYEEEPSWDEVLKRFRGTEL 148 (590)
T ss_pred cCceEEecCCce----eEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCccccCCCcHHHHHHHhCChHH
Confidence 3488999863 4 899999 999999999999999999999999999999 9999997 777652
Q ss_pred C----------CeEEEEecCCCCCCc-ccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCC
Q 021362 149 P----------DVATVLPMDGFHLYL-SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ~----------~~i~~v~qd~~~~~~-~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kq 215 (313)
. ..+++.+|.....+. ...|+.|++... ...+++.++++.++. ..++.+.+|||||+|
T Consensus 149 ~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~q 219 (590)
T PRK13409 149 QNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---------DERGKLDEVVERLGLENILDRDISELSGGELQ 219 (590)
T ss_pred HHHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhh---------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence 1 224555554322211 013677766421 134567888888884 346788899999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ 266 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~ 266 (313)
|++||++++.++++|++|+|+..||. .+++.|+++.+ ..++||||++++..
T Consensus 220 rv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~ 276 (590)
T PRK13409 220 RVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDY 276 (590)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99999999999999999999999999 45666666543 34799999999876
No 356
>PLN03073 ABC transporter F family; Provisional
Probab=99.94 E-value=1.6e-27 Score=243.42 Aligned_cols=200 Identities=11% Similarity=0.041 Sum_probs=131.3
Q ss_pred CccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC----
Q 021362 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 149 (313)
Q Consensus 74 ~m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~---- 149 (313)
.+.+|+++|+++.|++.. +|+|+||+|.+|+++||+||||||||||||+|+|....-+|++|+|.+.++...
T Consensus 174 ~~~~I~i~nls~~y~~~~----ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~ 249 (718)
T PLN03073 174 AIKDIHMENFSISVGGRD----LIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDT 249 (718)
T ss_pred CceeEEEceEEEEeCCCE----EEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCC
Confidence 345899999999998776 999999999999999999999999999999999964100277777654322100
Q ss_pred ------------------CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCC-------------------ccHHHHH
Q 021362 150 ------------------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-------------------FNPLLLL 192 (313)
Q Consensus 150 ------------------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~-------------------~~~~~~~ 192 (313)
..+++++|++.... .++.++... ....+.+.. ....++.
T Consensus 250 t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~---~~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~ 325 (718)
T PLN03073 250 TALQCVLNTDIERTQLLEEEAQLVAQQRELEF---ETETGKGKG-ANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAA 325 (718)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh---ccccccccc-ccccccchHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 00112222110000 000000000 000011111 1233455
Q ss_pred HHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChh----hHHHHHhhccceEEEEcChHHHH
Q 021362 193 NCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDEKWFIEVDLDTAM 265 (313)
Q Consensus 193 ~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~----~~~~l~~l~~~~i~vtHd~~~~~ 265 (313)
++|..++.. .++++.+||||||||++||++++.++++|++|+|+..||.. +.+.|+++....|+||||++++.
T Consensus 326 ~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~ 405 (718)
T PLN03073 326 SILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLN 405 (718)
T ss_pred HHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHH
Confidence 566666642 35567799999999999999999999999999999999994 44444444334579999999987
Q ss_pred H---HHh----hccc-ccCCchHH
Q 021362 266 Q---RVL----KRHI-STGKPPDV 281 (313)
Q Consensus 266 ~---rv~----griv-~~G~~~ev 281 (313)
. +++ |+++ ..|...++
T Consensus 406 ~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 406 TVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred HhCCEEEEEECCEEEEeCCCHHHH
Confidence 6 555 7776 46765544
No 357
>PLN03232 ABC transporter C family member; Provisional
Probab=99.94 E-value=5.9e-27 Score=256.11 Aligned_cols=189 Identities=14% Similarity=0.144 Sum_probs=147.6
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEe
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~ 156 (313)
.|+++|+++.|+... ...+|+|+||+|++|+.++|+||+|||||||+++|.|+++ |++|.+.. .+..++|++
T Consensus 614 ~I~~~~vsF~y~~~~-~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~G~i~~----~~~~Iayv~ 685 (1495)
T PLN03232 614 AISIKNGYFSWDSKT-SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS---HAETSSVV----IRGSVAYVP 685 (1495)
T ss_pred cEEEEeeEEEcCCCC-CCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc---ccCCCEEE----ecCcEEEEc
Confidence 599999999997421 1238999999999999999999999999999999999999 99987642 345799999
Q ss_pred cCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCcc----CCCCCCcCCCcchhhhhh
Q 021362 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHGVGDPVEDDILV 223 (313)
Q Consensus 157 qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~LSgG~kqRv~ia~al 223 (313)
|+++.+. -|++||+.++. + .+.+++.++++..+ .+.+.. ...||||||||++||||+
T Consensus 686 Q~p~Lf~---gTIreNI~fg~-----~--~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl 755 (1495)
T PLN03232 686 QVSWIFN---ATVRENILFGS-----D--FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAV 755 (1495)
T ss_pred Ccccccc---ccHHHHhhcCC-----c--cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHH
Confidence 9987654 59999998752 1 24455555555443 122222 237999999999999999
Q ss_pred ccCceEEEEcCCccccChhhHHHH-----Hhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDGGVWKDV-----SSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE~~~~~l-----~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
..+++++++|+++.-||.+.-+.+ ....+ ..|+|||+++.... +++ |++++.|+.+++..
T Consensus 756 y~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 756 YSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 999999999999999998443322 22222 35799999998776 555 99999999888764
No 358
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.94 E-value=1.1e-26 Score=199.17 Aligned_cols=131 Identities=18% Similarity=0.132 Sum_probs=101.5
Q ss_pred ccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---CCeEEEEecCCCCCCcccCCccc
Q 021362 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDVATVLPMDGFHLYLSQLDAME 171 (313)
Q Consensus 95 ~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~---~~~i~~v~qd~~~~~~~~ltv~e 171 (313)
.+|+|+||++++|++++|+||||||||||+|+|. +++|++.+++... ...++|++|
T Consensus 9 ~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il-------~~~G~v~~~~~~~~~~~~~~~~~~q-------------- 67 (176)
T cd03238 9 HNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL-------YASGKARLISFLPKFSRNKLIFIDQ-------------- 67 (176)
T ss_pred eeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh-------hcCCcEEECCcccccccccEEEEhH--------------
Confidence 4899999999999999999999999999999873 5689988776421 011222222
Q ss_pred ChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccC--ceEEEEcCCccccCh----h
Q 021362 172 DPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ--HKVVIVDGNYLFLDG----G 242 (313)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~--ar~Li~d~~~lllDE----~ 242 (313)
.++++.++.. .+.++.+||+||+||+++|++++.+ ++++++|+|+..||. .
T Consensus 68 --------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~ 127 (176)
T cd03238 68 --------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQ 127 (176)
T ss_pred --------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHH
Confidence 3456666632 4567789999999999999999999 999999999999999 4
Q ss_pred hHHHHHhhccc---eEEEEcChHHHHH
Q 021362 243 VWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 243 ~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
+.+.|+++.+. .|++||+++++..
T Consensus 128 l~~~l~~~~~~g~tvIivSH~~~~~~~ 154 (176)
T cd03238 128 LLEVIKGLIDLGNTVILIEHNLDVLSS 154 (176)
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 44555554322 4799999998643
No 359
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=2.4e-26 Score=193.55 Aligned_cols=129 Identities=17% Similarity=0.199 Sum_probs=109.5
Q ss_pred EccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC--------Ce
Q 021362 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--------DV 151 (313)
Q Consensus 80 ~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~--------~~ 151 (313)
++++++.|.+.. +++++||++++|++++|+|+||||||||+++|+|+++ |++|+|+++|.+.. ..
T Consensus 2 ~~~~~~~~~~~~----~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~~~~ 74 (157)
T cd00267 2 IENLSFRYGGRT----ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLPLEELRRR 74 (157)
T ss_pred eEEEEEEeCCee----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCCHHHHHhc
Confidence 578999997765 9999999999999999999999999999999999999 99999999885422 22
Q ss_pred EEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEE
Q 021362 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 152 i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li 231 (313)
++|++| ||+||+||++|+++++.++++++
T Consensus 75 i~~~~q---------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~i 103 (157)
T cd00267 75 IGYVPQ---------------------------------------------------LSGGQRQRVALARALLLNPDLLL 103 (157)
T ss_pred eEEEee---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 444443 99999999999999999999999
Q ss_pred EcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH
Q 021362 232 VDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 232 ~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
+|+|+..||. .+++.+.++.. ..+++||+++++..
T Consensus 104 lDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 104 LDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 9999999998 45555555544 24699999998865
No 360
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.93 E-value=4.3e-26 Score=224.49 Aligned_cols=175 Identities=15% Similarity=0.089 Sum_probs=142.9
Q ss_pred ccEEEEccceEEcccc-ccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEE
Q 021362 75 IPVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 153 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~-~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~ 153 (313)
-++++++|+++.|++. . +++++||.|.+|+.+||+||||+|||||+|+|+|.+. |.+|+|.++. .-.+|
T Consensus 319 ~~vl~~~~~~~~y~~~~~----l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~---~~~G~v~~g~---~v~ig 388 (530)
T COG0488 319 KLVLEFENVSKGYDGGRL----LLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG---PLSGTVKVGE---TVKIG 388 (530)
T ss_pred CeeEEEeccccccCCCce----eecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc---cCCceEEeCC---ceEEE
Confidence 3589999999999764 5 8999999999999999999999999999999999999 9999999863 34699
Q ss_pred EEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCceEE
Q 021362 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 154 ~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~ar~L 230 (313)
|+.|+...+. ...|+.+++... .+ ......+...|.+++.. ..+++..||||||-|+.+|..+..++.+|
T Consensus 389 yf~Q~~~~l~-~~~t~~d~l~~~-----~~-~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvL 461 (530)
T COG0488 389 YFDQHRDELD-PDKTVLEELSEG-----FP-DGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLL 461 (530)
T ss_pred EEEehhhhcC-ccCcHHHHHHhh-----Cc-cccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEE
Confidence 9999964433 345666665432 11 11256788899999833 35577799999999999999999999999
Q ss_pred EEcCCccccChhhHHHHHhhcc----ceEEEEcChHHHHH
Q 021362 231 IVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 231 i~d~~~lllDE~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
++|+|+.-||-+.++.|.+... ..++||||..++..
T Consensus 462 iLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~ 501 (530)
T COG0488 462 LLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDR 501 (530)
T ss_pred EEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHh
Confidence 9999999999866666666554 35799999999876
No 361
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.93 E-value=2e-26 Score=251.75 Aligned_cols=173 Identities=11% Similarity=0.142 Sum_probs=133.9
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHH
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~ 175 (313)
+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++| .++|++|++..+. .|++||+.+
T Consensus 441 ~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~---~~~G~i~~~g-----~iayv~Q~~~l~~---~Ti~eNI~~ 509 (1490)
T TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE---PSEGKIKHSG-----RISFSPQTSWIMP---GTIKDNIIF 509 (1490)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECC-----EEEEEeCCCccCC---ccHHHHHHh
Confidence 8999999999999999999999999999999999999 9999999987 4899999976543 499999987
Q ss_pred HHHhcCCCCCccHHHH------HHHHHHhhcCC----CccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHH
Q 021362 176 AHARRGAPWTFNPLLL------LNCLKNLRNQG----SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK 245 (313)
Q Consensus 176 ~~~~~~~~~~~~~~~~------~~~l~~l~~~~----~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~ 245 (313)
+... . ......+ .+.++.+..+. ..+...||||||||++||+|+..+++++++|+++..||.+..+
T Consensus 510 g~~~---~-~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~ 585 (1490)
T TIGR01271 510 GLSY---D-EYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEK 585 (1490)
T ss_pred cccc---c-hHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 6321 1 1111111 12222222222 2245699999999999999999999999999999999994444
Q ss_pred HHH-----hhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 246 DVS-----SMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 246 ~l~-----~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
.+. ++.+ ..|+|||+++.+.. |++ |+++..|+.+++..
T Consensus 586 ~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 586 EIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred HHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 443 3322 34799999998876 555 88989999888764
No 362
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.92 E-value=3.2e-25 Score=223.19 Aligned_cols=205 Identities=12% Similarity=0.099 Sum_probs=161.2
Q ss_pred EEEEccceEEccccc-cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC-----CCC
Q 021362 77 VVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----PPD 150 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~-~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~-----~~~ 150 (313)
-+..++++....++. ....+|+|||..+++||+.||+||+|||||||+++|+|....-...+|+|.+||+. .++
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~ 104 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRK 104 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhh
Confidence 366677776664431 22449999999999999999999999999999999999986212478999999954 335
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHhcC---CCCCccHHHHHHHHHHhhcC--CCccCC-----CCCCcCCCcchhh
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRG---APWTFNPLLLLNCLKNLRNQ--GSVYAP-----SFDHGVGDPVEDD 220 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~---~~~~~~~~~~~~~l~~l~~~--~~~~~~-----~LSgG~kqRv~ia 220 (313)
..+||.||+..++ .+||+|.+.+.+..+- ....+..++++++++.+++. .+..++ .+|||||+||+||
T Consensus 105 ~s~yV~QdD~l~~--~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia 182 (613)
T KOG0061|consen 105 ISGYVQQDDVLLP--TLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIA 182 (613)
T ss_pred eeEEEcccccccc--cccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHH
Confidence 6899999977555 4999999999876542 12345667889999999854 444444 6999999999999
Q ss_pred hhhccCceEEEEcCCccccCh----hhHHHHHhhccce---EEEEcChHHHHH----HHh----hcccccCCchHHHH
Q 021362 221 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEK---WFIEVDLDTAMQ----RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 221 ~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~~---i~vtHd~~~~~~----rv~----griv~~G~~~ev~~ 283 (313)
.-++.++.+|++|+|+..||. .+.+.|++++.++ |++-|.+.--.. +++ |+.+..|++.+...
T Consensus 183 ~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ 260 (613)
T KOG0061|consen 183 LELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLE 260 (613)
T ss_pred HHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHH
Confidence 999999999999999999999 6777777777653 466688765443 555 99999999977654
No 363
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.92 E-value=2.1e-26 Score=189.02 Aligned_cols=122 Identities=19% Similarity=0.169 Sum_probs=100.9
Q ss_pred ccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC--------CeEEEEecCCCCCCcccCC
Q 021362 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--------DVATVLPMDGFHLYLSQLD 168 (313)
Q Consensus 97 L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~--------~~i~~v~qd~~~~~~~~lt 168 (313)
|+|+||+|++|++++|+|+||||||||+++|+|+.+ |++|+|.++|.+.. ..++|++|+...+. .+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~t 75 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP---PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFP--GLT 75 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH---ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHT--TSB
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc---cccccccccccccccccccccccccccccccccccc--ccc
Confidence 689999999999999999999999999999999999 99999999987643 34999999954333 467
Q ss_pred cccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccC----CCCCCcCCCcchhhhhhccCceEEEEcCCc
Q 021362 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYA----PSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (313)
Q Consensus 169 v~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~----~~LSgG~kqRv~ia~al~~~ar~Li~d~~~ 236 (313)
+.+| ....++.++++.++. ..+..+ .+||+|||||++||++++.+++++++|+|+
T Consensus 76 v~~~-------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt 136 (137)
T PF00005_consen 76 VREN-------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPT 136 (137)
T ss_dssp HHHH-------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTT
T ss_pred cccc-------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 7777 234567778887772 223444 899999999999999999999999998886
No 364
>PTZ00243 ABC transporter; Provisional
Probab=99.91 E-value=6.3e-25 Score=240.40 Aligned_cols=170 Identities=15% Similarity=0.121 Sum_probs=132.4
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHH
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~ 175 (313)
+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+. ..++|++|++.. ++ .|++||+.+
T Consensus 675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~---~~~G~i~~~-----~~i~yv~Q~~~l-~~--~Tv~enI~~ 743 (1560)
T PTZ00243 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE---ISEGRVWAE-----RSIAYVPQQAWI-MN--ATVRGNILF 743 (1560)
T ss_pred eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEEC-----CeEEEEeCCCcc-CC--CcHHHHHHc
Confidence 9999999999999999999999999999999999999 999999874 469999999764 33 699999987
Q ss_pred HHHhcCCCCCccHHHH---------HHHHHHhhc----CCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChh
Q 021362 176 AHARRGAPWTFNPLLL---------LNCLKNLRN----QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG 242 (313)
Q Consensus 176 ~~~~~~~~~~~~~~~~---------~~~l~~l~~----~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~ 242 (313)
+.. .+.+++ .+.++.+.. ....+..+||||||||++||+|+..+++++++|+|+..||.+
T Consensus 744 ~~~-------~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~ 816 (1560)
T PTZ00243 744 FDE-------EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAH 816 (1560)
T ss_pred CCh-------hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHH
Confidence 421 111122 223333421 123456699999999999999999999999999999999984
Q ss_pred hHHHHHh-----hcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 243 VWKDVSS-----MFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 243 ~~~~l~~-----l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
..+.+.+ ... ..|++|||++.+.. +++ |++++.|+.+++..
T Consensus 817 ~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 817 VGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred HHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 3332221 222 34799999999866 555 89999999888754
No 365
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.7e-25 Score=207.33 Aligned_cols=193 Identities=15% Similarity=0.116 Sum_probs=145.4
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
.+.++++++.|+... ++|+++||++..|+.++++||+|+||||++++|..++. +++|.|.++|++.+
T Consensus 262 ~v~F~~V~F~y~~~r---~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD---~~sG~I~id~qdir~vtq~sl 335 (497)
T COG5265 262 AVAFINVSFAYDPRR---PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD---VNSGSITIDGQDIRDVTQQSL 335 (497)
T ss_pred eEEEEEEEeeccccc---hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC---CcCceEEEcchhHHHhHHHHH
Confidence 488999999997643 39999999999999999999999999999999999999 99999999998843
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHH---------hhcCCCc----cCCCCCCcCCC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---------LRNQGSV----YAPSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~---------l~~~~~~----~~~~LSgG~kq 215 (313)
+.||++|||...+. -|.+.|+.++ .+...+. .+....+. +-.+-+. +.-.|||||||
T Consensus 336 R~aIg~VPQDtvLFN---Dti~yni~yg-----r~~at~e-ev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekq 406 (497)
T COG5265 336 RRAIGIVPQDTVLFN---DTIAYNIKYG-----RPDATAE-EVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQ 406 (497)
T ss_pred HHHhCcCcccceehh---hhHHHHHhcc-----CccccHH-HHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHH
Confidence 45999999965444 2777777554 3332222 22222222 1122222 23389999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
||+||+++..+|++|++|+.+.-||- .+...|++... ..++|-|-+..+.. .++ |+++++|+-++++.
T Consensus 407 rvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 407 RVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred HHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHH
Confidence 99998888888888888877777777 44555555543 25899999999877 444 99999999999876
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 487 ~ 487 (497)
T COG5265 487 A 487 (497)
T ss_pred c
Confidence 4
No 366
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.91 E-value=1.9e-24 Score=228.47 Aligned_cols=193 Identities=18% Similarity=0.187 Sum_probs=159.5
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
-|+++|++.+|... -..+|+||||+|++||.|||+|..|||||||+++|-.+.. |.+|+|.+||.+.
T Consensus 1138 ~I~f~~~~~RYrp~--lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e---~~~G~I~IDgvdI~~igL~dL 1212 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPN--LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE---PAEGEILIDGVDISKIGLHDL 1212 (1381)
T ss_pred eEEEEEeEEEeCCC--CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC---ccCCeEEEcCeecccccHHHH
Confidence 49999999999764 2239999999999999999999999999999999999999 9999999999874
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccC----CCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~LSgG~kq 215 (313)
+.+++++||||..+. =|++.|+.-. .+...+.+-++|++.. .+.+..+ .++|-||||
T Consensus 1213 RsrlsIIPQdPvLFs---GTvR~NLDPf-------~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQ 1282 (1381)
T KOG0054|consen 1213 RSRLSIIPQDPVLFS---GTVRFNLDPF-------DEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQ 1282 (1381)
T ss_pred HhcCeeeCCCCceec---CccccccCcc-------cccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHH
Confidence 456999999987655 3899998532 1223344555555443 2333333 389999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
.+++|||+.++.++|++|+.+.-.|. -+.+.|++.++. ++.|-|.++.++. ||+ |++++.|+|.+++.
T Consensus 1283 LlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1283 LLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred HHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHh
Confidence 99999999999999999999999999 567777777765 4688899999999 777 99999999999986
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
+
T Consensus 1363 ~ 1363 (1381)
T KOG0054|consen 1363 D 1363 (1381)
T ss_pred C
Confidence 5
No 367
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.91 E-value=1.9e-24 Score=192.83 Aligned_cols=168 Identities=13% Similarity=0.041 Sum_probs=101.2
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHH-HHHHHHhcccC-----CCCc----eeecCC--CCCCCeEEEEecCCCCCC
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLA-AEVVRRINKIW-----PQKA----SSFDSQ--VKPPDVATVLPMDGFHLY 163 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLl-k~l~gl~~~~~-----p~~G----~i~~~g--~~~~~~i~~v~qd~~~~~ 163 (313)
+|+++||+|++||++||+||||||||||+ ..|...-+..+ |..+ .+.... ........+..+++....
T Consensus 10 ~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (226)
T cd03270 10 NLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQKTTSR 89 (226)
T ss_pred ccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEEecCCCCCC
Confidence 99999999999999999999999999996 44332100000 0000 010000 000112333444433222
Q ss_pred cccCCccc---ChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCc--eEEEEcCC
Q 021362 164 LSQLDAME---DPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGN 235 (313)
Q Consensus 164 ~~~ltv~e---~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~a--r~Li~d~~ 235 (313)
++..++.. ...+....+ ... ......+.++.++.. .+.++.+|||||+||++||++++.++ ++|++|+|
T Consensus 90 ~~~~~v~~~~~~~~~~~~~~--~~~-~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEP 166 (226)
T cd03270 90 NPRSTVGTVTEIYDYLRLLF--ARV-GIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEP 166 (226)
T ss_pred CCCccHHHHHHHHHHHHHHh--hhh-hHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 22223221 111111111 111 122235678888742 46678899999999999999999987 69999999
Q ss_pred ccccCh----hhHHHHHhhccc---eEEEEcChHHHHH
Q 021362 236 YLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 236 ~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
+..||. .+.+.|+++.+. .|++|||++++..
T Consensus 167 t~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~ 204 (226)
T cd03270 167 SIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRA 204 (226)
T ss_pred ccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHh
Confidence 999999 455555554432 4799999998643
No 368
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.90 E-value=4.1e-24 Score=225.92 Aligned_cols=189 Identities=12% Similarity=0.138 Sum_probs=154.1
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
+.++++|.+++.+.. .....|+||||+|++|+.++|+|+-|||||+|+.+|.|.++ ..+|++.++|. ++|+
T Consensus 517 ~~i~i~~~sfsW~~~-~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~---~~sG~v~v~gs-----iaYv 587 (1381)
T KOG0054|consen 517 NAIEIKNGSFSWDSE-SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP---KLSGSVAVNGS-----VAYV 587 (1381)
T ss_pred ceEEEeeeeEecCCC-CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc---cccceEEEcCe-----EEEe
Confidence 369999999999862 33448999999999999999999999999999999999999 99999999874 8999
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCCc----cCCCCCCcCCCcchhhhh
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~~----~~~~LSgG~kqRv~ia~a 222 (313)
+|.+..+. -|++||+.|+. ..++++.+++++...+ +... +.-+||||||||+++|||
T Consensus 588 ~Q~pWI~n---gTvreNILFG~-------~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARA 657 (1381)
T KOG0054|consen 588 PQQPWIQN---GTVRENILFGS-------PYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARA 657 (1381)
T ss_pred ccccHhhC---CcHHHhhhcCc-------cccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHH
Confidence 99987654 59999997752 3466777776665542 2222 333999999999999999
Q ss_pred hccCceEEEEcCCccccChhhHHHHH-----hhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDGGVWKDVS-----SMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE~~~~~l~-----~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
+-++|++.++|-|+.-+|.++-+.|- .+.+ ..|+|||.++.... .++ |++.+.|+.+|+.+
T Consensus 658 VY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 658 VYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred HhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHh
Confidence 99999999999999999995443333 2332 35799999988877 554 99999999999874
No 369
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.89 E-value=1.8e-23 Score=174.91 Aligned_cols=195 Identities=17% Similarity=0.136 Sum_probs=141.6
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
.+++++++...- -|-.+|.++..||++-++||||||||||+-.++|++ |-+|+|.++|.+..
T Consensus 2 ~l~qln~v~~~t--------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~----~~sGsi~~~G~~l~~~~~~e 69 (248)
T COG4138 2 ILMQLNDVAEST--------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT----SGSGSIQFAGQPLEAWSATE 69 (248)
T ss_pred ceeeeccccccc--------cccccccccccceEEEEECCCCccHHHHHHHHhCCC----CCCceEEECCcchhHHhHhH
Confidence 368888887653 356788999999999999999999999999999999 89999999998742
Q ss_pred --CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhc-
Q 021362 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVG- 224 (313)
Q Consensus 150 --~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~- 224 (313)
+.-+|+.|+....+ .|.|+..+.+. .|.......+.++...++ ++..+.+.+|||||=|||-+|..+.
T Consensus 70 LArhRAYLsQqq~p~f--~mpV~~YL~L~-----qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQ 142 (248)
T COG4138 70 LARHRAYLSQQQTPPF--AMPVWHYLTLH-----QPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ 142 (248)
T ss_pred HHHHHHHHhhccCCcc--hhhhhhhhhhc-----CchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEE
Confidence 22357777644222 46777766542 343333344555666665 3445567799999999999966543
Q ss_pred ------cCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 225 ------LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 225 ------~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
..++.|+.|+|..-||- .+-..|.+++.. +||..||++..++ ++. |+++..|..+|+...
T Consensus 143 v~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 143 ITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred ecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 35667777777777776 344555566655 4699999999888 443 999999999998766
Q ss_pred HHHhc
Q 021362 285 RIEYN 289 (313)
Q Consensus 285 ~~~~~ 289 (313)
.+...
T Consensus 223 ~vL~q 227 (248)
T COG4138 223 PVLAQ 227 (248)
T ss_pred HHHHH
Confidence 55443
No 370
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.88 E-value=6e-23 Score=179.43 Aligned_cols=143 Identities=12% Similarity=0.040 Sum_probs=108.3
Q ss_pred cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC---------CceeecCCCCC-----CCeEEEEecCCCCCC
Q 021362 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---------KASSFDSQVKP-----PDVATVLPMDGFHLY 163 (313)
Q Consensus 98 ~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~---------~G~i~~~g~~~-----~~~i~~v~qd~~~~~ 163 (313)
+++++++.+| +++|+||||||||||+++|+|++. +. .|++.+.|.+. ...++++||++...+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~ 89 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLG---EQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRY 89 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhc---cccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCce
Confidence 6788999999 999999999999999999999986 44 24576666552 346899999864321
Q ss_pred cccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhc----cCceEEEEcCCcccc
Q 021362 164 LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFL 239 (313)
Q Consensus 164 ~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~----~~ar~Li~d~~~lll 239 (313)
+.. ..+++.++++. ....+..+.+||+|||||+++|++++ .+++++++|+|...+
T Consensus 90 -----------------~~~---~~~~~~~~l~~-~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~L 148 (197)
T cd03278 90 -----------------SII---SQGDVSEIIEA-PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAAL 148 (197)
T ss_pred -----------------eEE---ehhhHHHHHhC-CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccC
Confidence 000 12455666666 44456677799999999999999986 466999999999999
Q ss_pred Ch----hhHHHHHhhccc--eEEEEcChHHHH
Q 021362 240 DG----GVWKDVSSMFDE--KWFIEVDLDTAM 265 (313)
Q Consensus 240 DE----~~~~~l~~l~~~--~i~vtHd~~~~~ 265 (313)
|+ .+++.|+++.+. .|++|||++++.
T Consensus 149 D~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~ 180 (197)
T cd03278 149 DDANVERFARLLKEFSKETQFIVITHRKGTME 180 (197)
T ss_pred CHHHHHHHHHHHHHhccCCEEEEEECCHHHHh
Confidence 99 455555555432 579999999764
No 371
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.86 E-value=4.8e-22 Score=184.31 Aligned_cols=180 Identities=17% Similarity=0.141 Sum_probs=130.5
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCC-----
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD----- 150 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~----- 150 (313)
.-||++|+.+.|.... .-+..||++|++||+|.|+|.||||||||++++.|+++ |++|+|.+||.+...
T Consensus 321 ~~lelrnvrfay~~~~---FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~---PqsG~I~ldg~pV~~e~led 394 (546)
T COG4615 321 KTLELRNVRFAYQDNA---FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ---PQSGEILLDGKPVSAEQLED 394 (546)
T ss_pred cceeeeeeeeccCccc---ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC---CCCCceeECCccCCCCCHHH
Confidence 3699999999998652 26789999999999999999999999999999999999 999999999987432
Q ss_pred ---eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC-----CCc--cCCCCCCcCCCcchhh
Q 021362 151 ---VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----GSV--YAPSFDHGVGDPVEDD 220 (313)
Q Consensus 151 ---~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-----~~~--~~~~LSgG~kqRv~ia 220 (313)
.++-||-| |++++ ...|.......+.+...|+++... .+. ..-.||.|||+|+++-
T Consensus 395 YR~LfSavFsD-yhLF~-------------~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll 460 (546)
T COG4615 395 YRKLFSAVFSD-YHLFD-------------QLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALL 460 (546)
T ss_pred HHHHHHHHhhh-HhhhH-------------hhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHH
Confidence 13445555 44433 122222223456777888887722 122 3339999999999997
Q ss_pred hhhccCceEEEEcCCccccCh--------hhHHHHHhhccceEEEEcChHHHHH--HHh----hccccc
Q 021362 221 ILVGLQHKVVIVDGNYLFLDG--------GVWKDVSSMFDEKWFIEVDLDTAMQ--RVL----KRHIST 275 (313)
Q Consensus 221 ~al~~~ar~Li~d~~~lllDE--------~~~~~l~~l~~~~i~vtHd~~~~~~--rv~----griv~~ 275 (313)
.|++..-.++++|+.-.=-|+ .++..+++.-+.++.||||-.-... |++ |++++.
T Consensus 461 ~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 461 LALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred HHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 777766666666665555555 4555666666667899998765444 665 888764
No 372
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.86 E-value=1.7e-21 Score=186.73 Aligned_cols=179 Identities=16% Similarity=0.097 Sum_probs=135.9
Q ss_pred CccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEE
Q 021362 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 153 (313)
Q Consensus 74 ~m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~ 153 (313)
+-|+|.++|+++.|.+.. .++++++|-|..++.++++||||+|||||+|+++|.+. |..|.|.-.-. ..++
T Consensus 386 p~pvi~~~nv~F~y~~~~---~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~---p~~G~vs~~~H---~~~~ 456 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNP---MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ---PTIGMVSRHSH---NKLP 456 (614)
T ss_pred CCCeEEEeccccCCCCcc---hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc---ccccccccccc---ccch
Confidence 346899999999998753 38999999999999999999999999999999999999 99999864321 1233
Q ss_pred EEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCceEE
Q 021362 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 154 ~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~ar~L 230 (313)
+..|......+-+.++.+++.- . .+.....+.+..+|.++|+. ...++.+||.|||.||.+|+.+..++.+|
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~~~---~--~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lL 531 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFMMP---K--FPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLL 531 (614)
T ss_pred hhhhhhHhhcCcchhHHHHHHH---h--ccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEE
Confidence 4444422111112334443322 1 22234567788999999954 34567799999999999999999999999
Q ss_pred EEcCCccccChhhHHHHHhhcc----ceEEEEcChHHHHH
Q 021362 231 IVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 231 i~d~~~lllDE~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
++|+|+-.||-+.++.+.+... ..|+||||+.++.+
T Consensus 532 lLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~q 571 (614)
T KOG0927|consen 532 LLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQ 571 (614)
T ss_pred EecCCCcCCCchhHHHHHHHHhccCCceeeeechhhHHHH
Confidence 9999999999866655555544 35799999999887
No 373
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=99.85 E-value=2.6e-21 Score=167.83 Aligned_cols=203 Identities=43% Similarity=0.713 Sum_probs=179.0
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCC
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~ 183 (313)
-+..+++|+.|+.|+||||++..+..- ||..-. -.+.+......++|+|+|++....+..+++...+..++|.|
T Consensus 116 ~n~~~l~glag~pGtgkst~~a~v~~a----Wp~~~~--~f~~e~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGap 189 (323)
T KOG2702|consen 116 SNNEELTGLAGRPGTGKSTRIAAVDNA----WPVNVN--KFAQESINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAP 189 (323)
T ss_pred ccchheeeeecCCCCcchhHHHHHHhh----cchhhh--hhhhhhcceeEEecccchhhhHHHHHhhcChHHHHhhcCCC
Confidence 456789999999999999999888774 354311 11111222234599999999988899999999999999999
Q ss_pred CCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcCh
Q 021362 184 WTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDL 261 (313)
Q Consensus 184 ~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~ 261 (313)
++++...+..+++.+. ...+.++|.+.+|-+..+.--..+....|++|+++.++++|+..|+.+.++++..+++.-|.
T Consensus 190 wTFD~~lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~ 269 (323)
T KOG2702|consen 190 WTFDSNLFLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDY 269 (323)
T ss_pred cccCHHHHHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhheeccccH
Confidence 9999999999999998 66788999999999999999889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccC--CchHHHHHHHHhcCCchhHHhhhcccCccEEeecCC
Q 021362 262 DTAMQRVLKRHISTG--KPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSID 312 (313)
Q Consensus 262 ~~~~~rv~griv~~G--~~~ev~~~~~~~~~~~~~~~i~~~~~~ad~ii~~~~ 312 (313)
+.+++||..|.+..| .+.+...|++..|+++|.++|..+.-.+|++++..+
T Consensus 270 ~~a~~RVa~RHl~sGl~~t~~ea~er~d~ND~~N~~~I~k~~i~~D~iv~~~n 322 (323)
T KOG2702|consen 270 EAAEERVAKRHLQSGLVTTIAEARERFDSNDLLNGRDIDKHLIKVDNIVHIRN 322 (323)
T ss_pred HHHHHHHHHHhhcccccCCHHHHHhhcccccccchHHHHhcccchHHHHHhhc
Confidence 999999999999999 899999999999999999999999999999998654
No 374
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.85 E-value=1.4e-21 Score=167.99 Aligned_cols=208 Identities=14% Similarity=0.207 Sum_probs=155.9
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccC-CCCceeecCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIW-PQKASSFDSQVK------ 147 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~-p~~G~i~~~g~~------ 147 (313)
|+++.+.||+..+....+.+++++++|+++++|||-||+|.+|||||-..|.|+|..+..| .+....++++.+
T Consensus 1 M~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~P 80 (330)
T COG4170 1 MPLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred CCcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCCh
Confidence 6789999999999887788889999999999999999999999999999999999987555 334445566544
Q ss_pred ------CCCeEEEEecCCCCCCcccCCcc----cChHHHHHhcCCCC---CccHHHHHHHHHHhhcCCC-----ccCCCC
Q 021362 148 ------PPDVATVLPMDGFHLYLSQLDAM----EDPKEAHARRGAPW---TFNPLLLLNCLKNLRNQGS-----VYAPSF 209 (313)
Q Consensus 148 ------~~~~i~~v~qd~~~~~~~~ltv~----e~~~~~~~~~~~~~---~~~~~~~~~~l~~l~~~~~-----~~~~~L 209 (313)
..+.++++||++....++.-++. +|+-.. ...|..+ ...+.++.++|.++|.... .++.+|
T Consensus 81 r~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~w-TfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~El 159 (330)
T COG4170 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAW-TYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYEL 159 (330)
T ss_pred HHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccc-cccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchh
Confidence 12358899999765544332222 111110 0111111 2345678899999995433 356699
Q ss_pred CCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HH--h--hcccc
Q 021362 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RV--L--KRHIS 274 (313)
Q Consensus 210 SgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv--~--griv~ 274 (313)
--|+-|+|.||+|++.++|+||.|+++.-+|+ .++..+..+... .++++||+..+.+ ++ + |+-++
T Consensus 160 TeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~E 239 (330)
T COG4170 160 TEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVE 239 (330)
T ss_pred ccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEeccccc
Confidence 99999999999999999999999999999998 555666555432 3599999999988 32 2 99999
Q ss_pred cCCchHHHH
Q 021362 275 TGKPPDVAK 283 (313)
Q Consensus 275 ~G~~~ev~~ 283 (313)
.++.++++.
T Consensus 240 Sa~~e~l~~ 248 (330)
T COG4170 240 SAPSEELVT 248 (330)
T ss_pred ccchhHHhc
Confidence 999888865
No 375
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.84 E-value=4e-21 Score=173.94 Aligned_cols=176 Identities=9% Similarity=0.063 Sum_probs=122.0
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC-CceeecCCC-C--------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASSFDSQV-K-------- 147 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~-~G~i~~~g~-~-------- 147 (313)
|.++|. +.|.... ++. .+. ..+++|+||||||||||+++|++++. +. .|++.+.+. +
T Consensus 6 ~~~~~f-~~~~~~~----~~~----~~~-~~~~~IvG~NGsGKStll~Ai~~ll~---~~~~~~~r~~~~~~li~~~~~~ 72 (251)
T cd03273 6 IILDGF-KSYATRT----VIS----GFD-PQFNAITGLNGSGKSNILDAICFVLG---ITNLSTVRASNLQDLIYKRGQA 72 (251)
T ss_pred EEEeCc-cccCcCE----eec----cCC-CCeEEEECCCCCCHHHHHHHHHHHhc---ccccccccccCHHHHhhcCCCC
Confidence 666776 6665433 222 222 56999999999999999999999997 66 356766554 1
Q ss_pred --CCCeEEEEecCCCC-------CCcccCCcccChHHHHHhcC-C-CCCccHHHHHHHHHHhhcCC--------------
Q 021362 148 --PPDVATVLPMDGFH-------LYLSQLDAMEDPKEAHARRG-A-PWTFNPLLLLNCLKNLRNQG-------------- 202 (313)
Q Consensus 148 --~~~~i~~v~qd~~~-------~~~~~ltv~e~~~~~~~~~~-~-~~~~~~~~~~~~l~~l~~~~-------------- 202 (313)
....+++++|++.. ...+.+++.+++.+...... . ......+++.++|+.++...
T Consensus 73 ~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~ 152 (251)
T cd03273 73 GITKASVTIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITK 152 (251)
T ss_pred CCcEEEEEEEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHH
Confidence 12268899998521 11235788888765432111 1 12234567888888888531
Q ss_pred --------CccCCCCCCcCCCcchhhhhhc----cCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHH
Q 021362 203 --------SVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTA 264 (313)
Q Consensus 203 --------~~~~~~LSgG~kqRv~ia~al~----~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~ 264 (313)
+.++.+||+||+||+++|++++ .+++++++|+|+..||. .+++.|+++.+. .|++||+.+..
T Consensus 153 ~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~ 232 (251)
T cd03273 153 VLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMF 232 (251)
T ss_pred HHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHH
Confidence 2456799999999999999987 57899999999999998 556666665443 47999996555
Q ss_pred HH
Q 021362 265 MQ 266 (313)
Q Consensus 265 ~~ 266 (313)
..
T Consensus 233 ~~ 234 (251)
T cd03273 233 NN 234 (251)
T ss_pred Hh
Confidence 43
No 376
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.83 E-value=3.6e-21 Score=174.68 Aligned_cols=174 Identities=14% Similarity=0.102 Sum_probs=114.4
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHH-----HHhcc--cCCCCce-----------eecCCCCCCC----e--
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV-----RRINK--IWPQKAS-----------SFDSQVKPPD----V-- 151 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~-----gl~~~--~~p~~G~-----------i~~~g~~~~~----~-- 151 (313)
.|+|++++|+.|.+++|.|+||||||||++.+. ..+.. ..|..++ |.++..+..+ .
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 799999999999999999999999999998663 11110 0022222 2233222110 0
Q ss_pred ----------------------------EEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--
Q 021362 152 ----------------------------ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-- 201 (313)
Q Consensus 152 ----------------------------i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-- 201 (313)
+.|..++...+ ..+|+.|++.+..... ...+..++|+.++..
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v--~~ltv~e~~~~~~~~~------~~~~~~~~L~~vgL~~l 161 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADV--LDMTVEEALEFFENIP------KIARKLQTLCDVGLGYI 161 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHH--hcCCHHHHHHHHHhhh------hHHHHHHHHHHcCCchh
Confidence 11111111111 2366666666654321 134566778888743
Q ss_pred -CCccCCCCCCcCCCcchhhhhhccC---ceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH--HH
Q 021362 202 -GSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ--RV 268 (313)
Q Consensus 202 -~~~~~~~LSgG~kqRv~ia~al~~~---ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~--rv 268 (313)
.++.+.+|||||+||+++|++++.+ ++++++|+|+..||. .+++.|.++.+. .|++|||++++.. ++
T Consensus 162 ~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~aD~i 241 (261)
T cd03271 162 KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWI 241 (261)
T ss_pred hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEE
Confidence 4667889999999999999999986 699999999999999 455555555433 4799999998865 33
Q ss_pred h----------hcccccCC
Q 021362 269 L----------KRHISTGK 277 (313)
Q Consensus 269 ~----------griv~~G~ 277 (313)
+ |++++.|+
T Consensus 242 i~Lgp~~g~~~G~iv~~Gt 260 (261)
T cd03271 242 IDLGPEGGDGGGQVVASGT 260 (261)
T ss_pred EEecCCcCCCCCEEEEeCC
Confidence 3 56666665
No 377
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.82 E-value=1.7e-20 Score=168.79 Aligned_cols=174 Identities=10% Similarity=0.035 Sum_probs=101.7
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcc-------------cCCCCc-----
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-------------IWPQKA----- 139 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~-------------~~p~~G----- 139 (313)
|+++|. |+|++.. ++++++ |++++|+||||||||||+++|++++.. ..+.+|
T Consensus 4 i~~~nf-ksy~~~~----~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~ 73 (243)
T cd03272 4 VIIQGF-KSYKDQT----VIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMS 73 (243)
T ss_pred EEEeCc-cCcccCc----ccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCce
Confidence 556664 4676655 777776 789999999999999999999965420 004444
Q ss_pred ---eeecCCCC-----------CCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCc-----cHHHHHHHHHHhhc
Q 021362 140 ---SSFDSQVK-----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF-----NPLLLLNCLKNLRN 200 (313)
Q Consensus 140 ---~i~~~g~~-----------~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~-----~~~~~~~~l~~l~~ 200 (313)
++.+++.+ ..+.++++++.. .++....+..+ +...+...+..... ...++.+++.. ..
T Consensus 74 ~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~-~l~~~~~t~~e-i~~~l~~~gl~~~~~~~~~~qg~i~~l~~l-~~ 150 (243)
T cd03272 74 AYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEY-FLDKKNVTKND-VMNLLESAGFSRSNPYYIVPQGKINSLTNM-KQ 150 (243)
T ss_pred EEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEE-EECCeEcCHHH-HHHHHHHcCCCCCCCcEEEEcCchHHhhhc-cc
Confidence 33333311 011244444432 12221233333 22232333332211 01122222221 12
Q ss_pred CCCccCCCCCCcCCCcchhhhhhc----cCceEEEEcCCccccCh----hhHHHHHhhccc-eE-EEEcChHHHH
Q 021362 201 QGSVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE-KW-FIEVDLDTAM 265 (313)
Q Consensus 201 ~~~~~~~~LSgG~kqRv~ia~al~----~~ar~Li~d~~~lllDE----~~~~~l~~l~~~-~i-~vtHd~~~~~ 265 (313)
..+.++.+|||||+||++||++++ .++.++++|+|+..+|. .+++.|+++.+. .+ +++|+. ++.
T Consensus 151 ~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~-~~~ 224 (243)
T cd03272 151 DEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRP-ELL 224 (243)
T ss_pred cccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCH-HHH
Confidence 234567799999999999999996 35899999999999999 556666666432 34 555664 444
No 378
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.81 E-value=2.2e-19 Score=159.54 Aligned_cols=187 Identities=22% Similarity=0.294 Sum_probs=138.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~ 188 (313)
++||.||||||||||++.|.+++. +..+ ...+.++++|+|+.... ...+.- .....+.|.+.+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~---~~~~---------~~~v~vi~~D~f~~~~~--~~~~~~--~~~~~g~p~~~d~ 64 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS---RWPD---------HPNVELITTDGFLYPNK--ELIERG--LMDRKGFPESYDM 64 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh---hcCC---------CCcEEEEecCcccCcHH--HHHHhh--hhhcCCCcccCCH
Confidence 589999999999999999999996 4211 12367799998865431 111111 1123567788888
Q ss_pred HHHHHHHHHhhc-CCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh-hhHHHHHhhccceEEEEcChHHHHH
Q 021362 189 LLLLNCLKNLRN-QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG-GVWKDVSSMFDEKWFIEVDLDTAMQ 266 (313)
Q Consensus 189 ~~~~~~l~~l~~-~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE-~~~~~l~~l~~~~i~vtHd~~~~~~ 266 (313)
+.+.+.|+.+.. .....+|.||.....|+.-......+++++|+|+.+++.|+ .-|..+.++++..|||+-|.+.+..
T Consensus 65 ~~l~~~L~~l~~g~~~v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~~~~~ 144 (220)
T cd02025 65 EALLKFLKDIKSGKKNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEK 144 (220)
T ss_pred HHHHHHHHHHHCCCCcEEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHHHHHH
Confidence 888899999987 46778999999998888765544667899999999999985 5677899999999999999998765
Q ss_pred HHh----------hcccc------cCCchH----HHHHHHHhcCCchh-HHhhhcccCccEEeecC
Q 021362 267 RVL----------KRHIS------TGKPPD----VAKWRIEYNDRPNA-ELIMKSKKNADLVIKSI 311 (313)
Q Consensus 267 rv~----------griv~------~G~~~e----v~~~~~~~~~~~~~-~~i~~~~~~ad~ii~~~ 311 (313)
|++ ||... .|-+.+ .+...|+.+++||. +||.|++..||+||+..
T Consensus 145 rl~~R~~r~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~~~ 210 (220)
T cd02025 145 WYIKRFLKLRETAFSDPDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEKG 210 (220)
T ss_pred HHHHHHHHHHHHHHhCchhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEEeC
Confidence 443 22221 343322 23445778999999 59999999999999753
No 379
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.81 E-value=3.3e-20 Score=174.81 Aligned_cols=170 Identities=15% Similarity=0.115 Sum_probs=124.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEe
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~ 156 (313)
+++-.++.|.||+.. |+--.=+|..||++|++||||-|||||.++|+|.++ |++|+ . ..-+++|-|
T Consensus 342 lv~y~~~~k~~g~F~-----L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik---Pdeg~-~-----~~~~vSyKP 407 (591)
T COG1245 342 LVEYPDLKKTYGDFK-----LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK---PDEGS-E-----EDLKVSYKP 407 (591)
T ss_pred eeecchheeecCceE-----EEecCCeeecceEEEEECCCCcchHHHHHHHhcccc---CCCCC-C-----ccceEeecc
Confidence 688889999998754 444455788999999999999999999999999999 99998 1 223477777
Q ss_pred cCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccCceEEEEcC
Q 021362 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (313)
Q Consensus 157 qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~ 234 (313)
|- ..+....||.+.+.-..... ... ...-.++++.|. ...++++..|||||.|||+||.+|..+|++.++|+
T Consensus 408 Qy--I~~~~~gtV~~~l~~~~~~~-~~~---s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDE 481 (591)
T COG1245 408 QY--ISPDYDGTVEDLLRSAIRSA-FGS---SYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDE 481 (591)
T ss_pred ee--ecCCCCCcHHHHHHHhhhhh-ccc---chhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecC
Confidence 74 22333468877654432211 111 111234455544 34577889999999999999999999999999999
Q ss_pred CccccCh----hhHHHHHhhccc----eEEEEcChHHHHH
Q 021362 235 NYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ 266 (313)
Q Consensus 235 ~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~ 266 (313)
|-..||- .+-+.|+.+... .++|+||+-.+..
T Consensus 482 PSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dy 521 (591)
T COG1245 482 PSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDY 521 (591)
T ss_pred chhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhh
Confidence 9999998 334444444432 4799999987765
No 380
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.80 E-value=1.4e-19 Score=188.37 Aligned_cols=204 Identities=12% Similarity=0.023 Sum_probs=155.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-----Ce
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-----DV 151 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~-----~~ 151 (313)
+.-..|+.+....+.++..+|+||+=-+.+|...+|+|+|||||||||++|+|.... --.+|+|.++|.+.. +.
T Consensus 787 V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~-G~I~Gdi~i~G~p~~q~tF~R~ 865 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG-GYIEGDILISGFPKDQETFARV 865 (1391)
T ss_pred eEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCccc-ceEEeEEEECCeeCchhhhccc
Confidence 455566655553222344599999999999999999999999999999999997531 145789999997744 56
Q ss_pred EEEEecCCCCCCcccCCcccChHHHHHhcCC---CCCccHHHHHHHHHHhhcC--CCccCC----CCCCcCCCcchhhhh
Q 021362 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGA---PWTFNPLLLLNCLKNLRNQ--GSVYAP----SFDHGVGDPVEDDIL 222 (313)
Q Consensus 152 i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~---~~~~~~~~~~~~l~~l~~~--~~~~~~----~LSgG~kqRv~ia~a 222 (313)
+|||.|++.|.+ .+||+|-+.+.+.++.. +..+..+.++++++.|++. .+.-++ -||..||+|+.|+.-
T Consensus 866 ~GYvqQ~DiH~~--~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVE 943 (1391)
T KOG0065|consen 866 SGYVEQQDIHSP--ELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVE 943 (1391)
T ss_pred cceeecccccCc--ccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEE
Confidence 999999998885 49999999998876632 2223335578888888844 455444 499999999999999
Q ss_pred hccCc-eEEEEcCCccccCh----hhHHHHHhhccce--E-EEEcChHHHHH----HHh-----hcccccCCchHHHH
Q 021362 223 VGLQH-KVVIVDGNYLFLDG----GVWKDVSSMFDEK--W-FIEVDLDTAMQ----RVL-----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~a-r~Li~d~~~lllDE----~~~~~l~~l~~~~--i-~vtHd~~~~~~----rv~-----griv~~G~~~ev~~ 283 (313)
|+.+| -+|.+|+|+.+||. .+.+.++++.+.+ | ..-|.+....- |++ |+.|..|+..+-..
T Consensus 944 LvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~ 1021 (1391)
T KOG0065|consen 944 LVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSS 1021 (1391)
T ss_pred EecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccH
Confidence 98888 88889999999999 5677777777654 5 44487665433 655 89999888766443
No 381
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.80 E-value=1e-19 Score=176.01 Aligned_cols=190 Identities=18% Similarity=0.181 Sum_probs=149.6
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~----- 149 (313)
-+++++++++..- .++|+||++.+|||+||.|-=|||+|-|+++|.|..+ +.+|+|.++|++..
T Consensus 261 ~~~l~v~~l~~~~--------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~---~~~G~i~l~G~~v~~~sp~ 329 (500)
T COG1129 261 EPVLEVRNLSGGG--------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP---ASSGEILLDGKPVRIRSPR 329 (500)
T ss_pred CcEEEEecCCCCC--------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc---CCCceEEECCEEccCCCHH
Confidence 4578999887542 4789999999999999999999999999999999888 89999999998632
Q ss_pred ----CeEEEEecCCCC-CCcccCCcccChHHHHH-hcC----CCCCccHHHHHHHHHHhh---cCCCccCCCCCCcCCCc
Q 021362 150 ----DVATVLPMDGFH-LYLSQLDAMEDPKEAHA-RRG----APWTFNPLLLLNCLKNLR---NQGSVYAPSFDHGVGDP 216 (313)
Q Consensus 150 ----~~i~~v~qd~~~-~~~~~ltv~e~~~~~~~-~~~----~~~~~~~~~~~~~l~~l~---~~~~~~~~~LSgG~kqR 216 (313)
.-++||+.|.-. -....+++.+|+.+... .+. .......+.+.++.+.++ ...+..+..||||.||+
T Consensus 330 ~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQK 409 (500)
T COG1129 330 DAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQK 409 (500)
T ss_pred HHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhh
Confidence 238999988421 01124799999988721 111 122223344566667776 33456788999999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccce---EEEEcChHHHHH---HHh----hccccc
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEK---WFIEVDLDTAMQ---RVL----KRHIST 275 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~~---i~vtHd~~~~~~---rv~----griv~~ 275 (313)
|.||++++.++++||+|+|+-..|- ++.+.|+++.+++ +++|-++.++.. ||+ ||++..
T Consensus 410 VvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e 482 (500)
T COG1129 410 VVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGE 482 (500)
T ss_pred HHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999998 7788888887774 699999999997 777 888864
No 382
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.80 E-value=5e-20 Score=162.83 Aligned_cols=165 Identities=12% Similarity=0.026 Sum_probs=107.5
Q ss_pred EEEEccceEEccccccccccccccccccC-CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecC-------CCCC
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVN-VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS-------QVKP 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~-~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~-------g~~~ 148 (313)
-|+++|+. .|.+. .+++|+.. +|++++|+||||||||||+++|++.+.. +..+....+ ....
T Consensus 5 ~i~l~nf~-~y~~~-------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g--~~~~~~~~~~~~~~~~~~~~ 74 (213)
T cd03279 5 KLELKNFG-PFREE-------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYG--KTPRYGRQENLRSVFAPGED 74 (213)
T ss_pred EEEEECCc-CcCCc-------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEec--CccccccchhHHHHhcCCCc
Confidence 48889988 66543 34566654 5999999999999999999999964421 333333321 1123
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHH--HHHHh--hcCCCccCCCCCCcCCCcchhhhhhc
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN--CLKNL--RNQGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~--~l~~l--~~~~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
...+++++|+.... .++.... +.. .+.+.+ .++.. ....+.++..||+||+||+++|++++
T Consensus 75 ~~~v~~~f~~~~~~----~~~~r~~-------gl~----~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~ 139 (213)
T cd03279 75 TAEVSFTFQLGGKK----YRVERSR-------GLD----YDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALA 139 (213)
T ss_pred cEEEEEEEEECCeE----EEEEEec-------CCC----HHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHH
Confidence 34588888885322 1232321 222 122211 12222 23346677899999999999999997
Q ss_pred c----------CceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH
Q 021362 225 L----------QHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 225 ~----------~ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
. +++++++|+|+..+|. .+.+.+.++.+ ..+++|||++++..
T Consensus 140 ~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~ 198 (213)
T cd03279 140 LSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKER 198 (213)
T ss_pred hHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHh
Confidence 4 4579999999999998 44555555543 24799999998764
No 383
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.80 E-value=1.2e-19 Score=178.81 Aligned_cols=175 Identities=14% Similarity=-0.018 Sum_probs=133.3
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
..|.++|++..-++.. ..|++.+|+|++|+-+-|.||||||||||+|+|+|+-+ --+|+|..- ....+-|+
T Consensus 391 ~~i~~~nl~l~~p~~~---~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP---~g~G~I~~P---~~~~~lfl 461 (604)
T COG4178 391 HGITLENLSLRTPDGQ---TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWP---WGSGRISMP---ADSALLFL 461 (604)
T ss_pred ceeEEeeeeEECCCCC---eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCc---cCCCceecC---CCCceEEe
Confidence 4699999999987643 38999999999999999999999999999999999987 567887764 23447899
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC-------CCccCC-CCCCcCCCcchhhhhhccCc
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------GSVYAP-SFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------~~~~~~-~LSgG~kqRv~ia~al~~~a 227 (313)
||.+|... -|.+|-+.++... .....+.+.++|..++++ ...... .||+|||||+++||.+.++|
T Consensus 462 pQ~PY~p~---GtLre~l~YP~~~----~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP 534 (604)
T COG4178 462 PQRPYLPQ---GTLREALCYPNAA----PDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKP 534 (604)
T ss_pred cCCCCCCC---ccHHHHHhCCCCC----CCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCC
Confidence 99976432 3777777665322 125567778888877732 222333 99999999999999999999
Q ss_pred eEEEEcCCccccChhhHHHHHhhccc------eEEEEcChHHHHH
Q 021362 228 KVVIVDGNYLFLDGGVWKDVSSMFDE------KWFIEVDLDTAMQ 266 (313)
Q Consensus 228 r~Li~d~~~lllDE~~~~~l~~l~~~------~i~vtHd~~~~~~ 266 (313)
+.+++|+.+.-|||+....+.++.++ .|.|.|.......
T Consensus 535 ~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~ 579 (604)
T COG4178 535 KWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNF 579 (604)
T ss_pred CEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHH
Confidence 99999999999999554444444433 3577787665543
No 384
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.80 E-value=8.1e-21 Score=167.84 Aligned_cols=166 Identities=12% Similarity=0.067 Sum_probs=108.6
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEec
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~q 157 (313)
|+++|.. .|++.. ++++++| +++||+||||||||||+++|...+. .+.... ....++++++
T Consensus 6 l~l~nfk-~~~~~~----~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G---~~~~~~------~~~~i~~~~~ 66 (212)
T cd03274 6 LVLENFK-SYAGEQ----VIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFG---FRASKM------RQKKLSDLIH 66 (212)
T ss_pred EEEECcc-cCCCCe----eeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhc---cCHHHh------hhhhHHHHhc
Confidence 7788876 888777 8998887 8999999999999999999985542 110000 1134666776
Q ss_pred CCCCCCcccCCcccChHHHHHh--------cCCCCCccHH--HHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhcc
Q 021362 158 DGFHLYLSQLDAMEDPKEAHAR--------RGAPWTFNPL--LLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 158 d~~~~~~~~ltv~e~~~~~~~~--------~~~~~~~~~~--~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~ 225 (313)
.....+ .+++.++..+.... ++........ ...++++.++ ...+.++..||+||+||+++|++++.
T Consensus 67 ~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~ 144 (212)
T cd03274 67 NSAGHP--NLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFAL 144 (212)
T ss_pred CCCCCC--CCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHh
Confidence 643322 36666665543221 2222111100 0122233333 33455677999999999999999863
Q ss_pred ----CceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHH
Q 021362 226 ----QHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTA 264 (313)
Q Consensus 226 ----~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~ 264 (313)
+++++++|+|+..+|. .+++.++++.+. .|++||+.+..
T Consensus 145 ~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~ 193 (212)
T cd03274 145 HHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMF 193 (212)
T ss_pred cccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHH
Confidence 5799999999999998 556666665433 47999996543
No 385
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=1.4e-19 Score=169.82 Aligned_cols=175 Identities=16% Similarity=0.124 Sum_probs=135.9
Q ss_pred CccEEEEccceEEccc-cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeE
Q 021362 74 EIPVVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVA 152 (313)
Q Consensus 74 ~m~~l~~~~l~~~y~~-~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i 152 (313)
.-|+|-+.+|++.|.+ .. .+.+++|-|.--..++|+||||.||||||++|.|-+. |+.|+.+-+. +-+|
T Consensus 583 ~PPvLGlH~VtFgy~gqkp----LFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~---P~~GE~RKnh---rL~i 652 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYPGQKP----LFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD---PNDGELRKNH---RLRI 652 (807)
T ss_pred CCCeeecccccccCCCCCc----hhhcccccccccceeEEECCCCccHHHHHHHHhcCCC---CCcchhhccc---eeee
Confidence 3468999999999954 44 8899999999999999999999999999999999999 9999987552 3357
Q ss_pred EEEecCCCCCCcccCCcccChHHHH-HhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCce
Q 021362 153 TVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 153 ~~v~qd~~~~~~~~ltv~e~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~ar 228 (313)
|++.|... ..++..+.....+ +.+..| .+.++..|..+|+. ....+..|||||+-||++|-..+..+.
T Consensus 653 G~FdQh~~----E~L~~Eetp~EyLqr~FNlp----yq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PD 724 (807)
T KOG0066|consen 653 GWFDQHAN----EALNGEETPVEYLQRKFNLP----YQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPD 724 (807)
T ss_pred echhhhhH----HhhccccCHHHHHHHhcCCC----hHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCC
Confidence 87766532 2466666554443 334444 45667778888743 345778999999999999988888899
Q ss_pred EEEEcCCccccChhh----HHHHHhhccceEEEEcChHHHHH
Q 021362 229 VVIVDGNYLFLDGGV----WKDVSSMFDEKWFIEVDLDTAMQ 266 (313)
Q Consensus 229 ~Li~d~~~lllDE~~----~~~l~~l~~~~i~vtHd~~~~~~ 266 (313)
+||+|+|+.-||-+. -+.|.++...+|+||||..++.+
T Consensus 725 vlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeRLi~e 766 (807)
T KOG0066|consen 725 VLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDERLIVE 766 (807)
T ss_pred EEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecccceeee
Confidence 999999999999744 44445555557899999888766
No 386
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.77 E-value=2.7e-18 Score=157.81 Aligned_cols=191 Identities=20% Similarity=0.325 Sum_probs=141.0
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~ 184 (313)
+...++||.||||||||||+++|.+++.+ ||++|. +.++.+|+|+.... ..+...+ ...++.|.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~-~~~~g~-----------V~vi~~D~f~~~~~---~l~~~g~-~~~~g~P~ 123 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSR-WPEHRK-----------VELITTDGFLHPNQ---VLKERNL-MKKKGFPE 123 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh-cCCCCc-----------eEEEecccccccHH---HHHHcCC-ccccCCCh
Confidence 45689999999999999999999999962 344443 45678888765431 1111111 13457788
Q ss_pred CccHHHHHHHHHHhhcCCC-ccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh------hhHHHHHhhccceEEE
Q 021362 185 TFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG------GVWKDVSSMFDEKWFI 257 (313)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~-~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE------~~~~~l~~l~~~~i~v 257 (313)
+.+.+.+.+.+..+..+.. ..+|.||.-...++.-......+++++|+|+.+++.++ ..|..+.++++..|||
T Consensus 124 s~D~~~l~~~L~~Lk~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~Iyv 203 (290)
T TIGR00554 124 SYDMHRLVKFLSDLKSGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYV 203 (290)
T ss_pred hccHHHHHHHHHHHHCCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEEEE
Confidence 8888888888988887654 78899998888877654455578999999999988554 4588899999999999
Q ss_pred EcChHHHHHHHhhccc-----c-----------cCCch-H---HHHHHHHhcCCchhH-HhhhcccCccEEeecC
Q 021362 258 EVDLDTAMQRVLKRHI-----S-----------TGKPP-D---VAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 311 (313)
Q Consensus 258 tHd~~~~~~rv~griv-----~-----------~G~~~-e---v~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~ 311 (313)
+-|.+.+..|.+.|.. + .|-++ + .+.+.|.....||.. +|+|++..||+|++..
T Consensus 204 Da~~d~~~~w~i~R~~~l~~~~~~~~~s~~~~~~~~~~~ea~~~~~~~w~~~~~~nl~~~I~Ptr~rAdlIl~~~ 278 (290)
T TIGR00554 204 DAEEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLSKEEAIKTAMTIWKEINWLNLKQNILPTRERASLILTKG 278 (290)
T ss_pred ECCHHHHHHHHHHHHHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHHcchhhHHhhCCCCcccccEEEecC
Confidence 9999988875442211 0 02222 2 345668999999985 9999999999999854
No 387
>PTZ00301 uridine kinase; Provisional
Probab=99.77 E-value=7.9e-18 Score=148.29 Aligned_cols=184 Identities=23% Similarity=0.333 Sum_probs=138.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCcc
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN 187 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~ 187 (313)
-+|||.|++|||||||.+.|...+. -..| ...+.++++|+|+.....+... ......++.|++++
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~---~~~~---------~~~~~vi~~D~yy~~~~~~~~~---~~~~~~~d~p~a~D 68 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELM---AHCG---------PVSIGVICEDFYYRDQSNIPES---ERAYTNYDHPKSLE 68 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHH---hhcC---------CCeEEEeCCCCCccCcccCCHH---HhcCCCCCChhhhC
Confidence 5899999999999999999887663 1111 1235678999876554222211 11223567788899
Q ss_pred HHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcChHHHHHH
Q 021362 188 PLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQR 267 (313)
Q Consensus 188 ~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~~~~r 267 (313)
.+.+.+.|..+..+.....|.|+.....|..- .....+.+++|+|+.+++.+ ..+.++++..||++.+.++.+.|
T Consensus 69 ~~~l~~~l~~L~~g~~i~~P~yd~~~~~~~~~-~~~i~p~~ViIvEGi~~l~~----~~l~~l~D~~ifvd~~~d~~~~R 143 (210)
T PTZ00301 69 HDLLTTHLRELKSGKTVQIPQYDYVHHTRSDT-AVTMTPKSVLIVEGILLFTN----AELRNEMDCLIFVDTPLDICLIR 143 (210)
T ss_pred HHHHHHHHHHHHcCCcccCCCcccccCCcCCc-eEEeCCCcEEEEechhhhCC----HHHHHhCCEEEEEeCChhHHHHH
Confidence 99999999999877777888888776666542 22335679999999999777 46788889999999999999998
Q ss_pred Hhhcccc-cCCchHHHHHHHHhcCCchhH-HhhhcccCccEEeecC
Q 021362 268 VLKRHIS-TGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 311 (313)
Q Consensus 268 v~griv~-~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~ 311 (313)
.+.|.+. .|.+.+-+..+|..++.|+.. ||.|++..||+||++.
T Consensus 144 r~~Rd~~~rG~~~e~v~~~~~~~v~~~~~~~I~p~k~~ADiIi~~~ 189 (210)
T PTZ00301 144 RAKRDMRERGRTFESVIEQYEATVRPMYYAYVEPSKVYADIIVPSW 189 (210)
T ss_pred HHhhhHHhcCCCHHHHHHHHHHhhcccHHHHcCccccCCcEEEcCC
Confidence 8877775 788877777777877666665 9999999999999753
No 388
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.77 E-value=9.5e-19 Score=167.93 Aligned_cols=200 Identities=14% Similarity=0.066 Sum_probs=131.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEe
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~ 156 (313)
-+.++|+++.|.+.. +++|+.|++.+|+-+||+|+|||||||+|++|+|-.. |..-.+ .+.+
T Consensus 75 dvk~~sls~s~~g~~----l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~---P~p~~~-----------d~y~ 136 (614)
T KOG0927|consen 75 DVKIESLSLSFHGVE----LIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREV---PIPEHI-----------DFYL 136 (614)
T ss_pred cceeeeeeeccCCce----eeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCC---CCCccc-----------chhh
Confidence 599999999999888 9999999999999999999999999999999999987 643222 2111
Q ss_pred cCCCCCCcccCCcccChH-----------HHHHhcCC--------------------CCCccHHHHHHHHHHhhc---CC
Q 021362 157 MDGFHLYLSQLDAMEDPK-----------EAHARRGA--------------------PWTFNPLLLLNCLKNLRN---QG 202 (313)
Q Consensus 157 qd~~~~~~~~ltv~e~~~-----------~~~~~~~~--------------------~~~~~~~~~~~~l~~l~~---~~ 202 (313)
.+....+. ..++.+.+. +....+.. .......++..+|..++. ..
T Consensus 137 ls~e~~ps-~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~ 215 (614)
T KOG0927|consen 137 LSREIEPS-EKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQ 215 (614)
T ss_pred hcccCCCc-hHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHH
Confidence 11111111 111111111 11111100 001111223333333331 23
Q ss_pred CccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhc---cc--eEEEEcChHHHHH---HHh----h
Q 021362 203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF---DE--KWFIEVDLDTAMQ---RVL----K 270 (313)
Q Consensus 203 ~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~---~~--~i~vtHd~~~~~~---rv~----g 270 (313)
.+....||||++.|+++|++|...+.+|++|+|+..||-+....|.++. +. .++++|+.++.-. .|+ +
T Consensus 216 ~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~k 295 (614)
T KOG0927|consen 216 DKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNK 295 (614)
T ss_pred HHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheeccc
Confidence 5567799999999999999999999999999999999986665565554 33 3699999999887 666 5
Q ss_pred ccc-ccCCchHHHHHHHHhcCCchhH
Q 021362 271 RHI-STGKPPDVAKWRIEYNDRPNAE 295 (313)
Q Consensus 271 riv-~~G~~~ev~~~~~~~~~~~~~~ 295 (313)
+.+ ..|+-++.+..+-+....++.+
T Consensus 296 kl~~y~Gnydqy~~tr~E~~~~q~K~ 321 (614)
T KOG0927|consen 296 KLIYYEGNYDQYVKTRSELEENQMKA 321 (614)
T ss_pred ceeeecCCHHHHhhHHHHHhHHHHHH
Confidence 634 5677777665544444334433
No 389
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=1.8e-18 Score=165.24 Aligned_cols=190 Identities=13% Similarity=0.042 Sum_probs=121.6
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEe
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~ 156 (313)
=|.+.+++..||++. +|.+-++++..|..+||+|+||+|||||||+|+. |.|.....+-.-..-++.
T Consensus 80 Di~~~~fdLa~G~k~----LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~---------~~v~~f~veqE~~g~~t~ 146 (582)
T KOG0062|consen 80 DIHIDNFDLAYGGKI----LLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN---------GQVSGFHVEQEVRGDDTE 146 (582)
T ss_pred ceeeeeeeeeecchh----hhcCCceeeecccccceeCCCCCcHHHHHHHHHh---------cCcCccCchhheeccchH
Confidence 378889999999988 9999999999999999999999999999999987 112111110000011111
Q ss_pred cCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHH-HHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCceEEEE
Q 021362 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN-CLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (313)
Q Consensus 157 qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~ 232 (313)
-.... ...++.+.+.+..-.. .......+.+.. +|..+|.. ..++..+||||.|.|+++|+|+..+|++|++
T Consensus 147 ~~~~~-l~~D~~~~dfl~~e~~---l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLL 222 (582)
T KOG0062|consen 147 ALQSV-LESDTERLDFLAEEKE---LLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLL 222 (582)
T ss_pred HHhhh-hhccHHHHHHHHhhhh---hhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEee
Confidence 11000 0111122221111100 111112233333 77778743 3456779999999999999999999999999
Q ss_pred cCCccccChhhHHHHHhhcc----ceEEEEcChHHHHH---HHh---hccc--ccCCchHHHH
Q 021362 233 DGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL---KRHI--STGKPPDVAK 283 (313)
Q Consensus 233 d~~~lllDE~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~---griv--~~G~~~ev~~ 283 (313)
|+|+..||-.....|..... ..++|+||-++.-. .|+ ++-+ ..|.-+++.+
T Consensus 223 DEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk 285 (582)
T KOG0062|consen 223 DEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVK 285 (582)
T ss_pred cCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHH
Confidence 99999999865555555543 35799999988766 454 3322 2466555544
No 390
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.76 E-value=1.6e-17 Score=148.46 Aligned_cols=191 Identities=38% Similarity=0.627 Sum_probs=143.9
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCC
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~ 183 (313)
-.+..++||.||||||||||++.|+++++ ++.|.+.+ .+..|+++.....+. ++ .. ....+.+
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~---~~~g~~~v----------~i~~D~~~~~~~~~~--~~-g~-~~~~~~~ 92 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ---QDGELPAI----------QVPMDGFHLDNAVLD--AH-GL-RPRKGAP 92 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhh---hccCCceE----------EEecccccCCHHHHH--hc-cc-ccccCCC
Confidence 35678999999999999999999999998 77775432 055665544321100 00 00 0113345
Q ss_pred CCccHHHHHHHHHHhhcCC-CccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcChH
Q 021362 184 WTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLD 262 (313)
Q Consensus 184 ~~~~~~~~~~~l~~l~~~~-~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~ 262 (313)
..++...+.+++..+.... ....+.++....+.+.-...+....++++.|+.++++++..|..+..+++..++++-+.+
T Consensus 93 ~~~d~~~~~~~l~~l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~ 172 (229)
T PRK09270 93 ETFDVAGLAALLRRLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAE 172 (229)
T ss_pred CCCCHHHHHHHHHHHHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHH
Confidence 5667777778888887554 567777887776655433233335789999999999998889999999999999999999
Q ss_pred HHHHHHhhcccccCCchHHHHHHHHhcCCchhHHhhhcccCccEEeecC
Q 021362 263 TAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSI 311 (313)
Q Consensus 263 ~~~~rv~griv~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~ad~ii~~~ 311 (313)
...+|+..|....|...+-+..++..+++++.+++.+.+..||+||.+.
T Consensus 173 ~~~~R~~~R~~~~g~s~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~n~ 221 (229)
T PRK09270 173 VLRERLVARKLAGGLSPEAAEAFVLRNDGPNARLVLETSRPADLVLEMT 221 (229)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHhcChHHHHHHHhcCCCCCEEEEec
Confidence 9888888776678888787888888889999999999999999999875
No 391
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.75 E-value=2.2e-18 Score=179.60 Aligned_cols=94 Identities=20% Similarity=0.186 Sum_probs=75.1
Q ss_pred HHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCc---eEEEEcCCccccCh----hhHHHHHhhccc---eEEE
Q 021362 191 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFI 257 (313)
Q Consensus 191 ~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~a---r~Li~d~~~lllDE----~~~~~l~~l~~~---~i~v 257 (313)
..+.|+.++.. .++.+.+|||||+||+.||++++.++ .++++|+|+..||. .+++.|.++.+. .|+|
T Consensus 810 ~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIii 889 (943)
T PRK00349 810 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVI 889 (943)
T ss_pred HHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 35667777743 46678899999999999999999998 99999999999999 556666665433 4799
Q ss_pred EcChHHHHH--HHh----------hcccccCCchHHHHH
Q 021362 258 EVDLDTAMQ--RVL----------KRHISTGKPPDVAKW 284 (313)
Q Consensus 258 tHd~~~~~~--rv~----------griv~~G~~~ev~~~ 284 (313)
|||++++.. +++ |++++.|+++++..+
T Consensus 890 tH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~ 928 (943)
T PRK00349 890 EHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVAKV 928 (943)
T ss_pred ecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHHhC
Confidence 999999865 443 688999999888653
No 392
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.75 E-value=1.5e-17 Score=145.25 Aligned_cols=183 Identities=28% Similarity=0.402 Sum_probs=143.5
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~ 184 (313)
++.-++||.|+|||||||+.+.|.-.++ . ..+.+++||+|+-.....+..++.. ..+..|.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~---~-------------~~~~~I~~D~YYk~~~~~~~~~~~~---~n~d~p~ 66 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLG---V-------------EKVVVISLDDYYKDQSHLPFEERNK---INYDHPE 66 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhC---c-------------CcceEeeccccccchhhcCHhhcCC---cCccChh
Confidence 3457999999999999999999999996 1 2467899998876543333322221 2455778
Q ss_pred CccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcChHHH
Q 021362 185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTA 264 (313)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~~ 264 (313)
+++.+.+.+.|..+..+.....|.||.-+..|.. -..-..+.+++++|+-+++.| +.|+++++-.|||+-|.+..
T Consensus 67 A~D~dLl~~~L~~L~~g~~v~~P~yd~~~~~r~~-~~i~~~p~~VVIvEGi~~l~d----~~lr~~~d~kIfvdtd~D~R 141 (218)
T COG0572 67 AFDLDLLIEHLKDLKQGKPVDLPVYDYKTHTREP-ETIKVEPNDVVIVEGILLLYD----ERLRDLMDLKIFVDTDADVR 141 (218)
T ss_pred hhcHHHHHHHHHHHHcCCcccccccchhcccccC-CccccCCCcEEEEeccccccc----HHHHhhcCEEEEEeCCccHH
Confidence 8899999999999988888888888877777763 222445689999999999999 58888999999999998888
Q ss_pred HHHHhhccc-ccCCchHHHHHHHHhcCCchhH-HhhhcccCccEEeecC
Q 021362 265 MQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 311 (313)
Q Consensus 265 ~~rv~griv-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~ 311 (313)
..|.+-|.+ ++|..-+-..++|...++|+++ ||+|+++.||++++..
T Consensus 142 liRri~RD~~~rg~~~e~vi~qy~~~vkp~~~~fIeptk~~ADiiip~~ 190 (218)
T COG0572 142 LIRRIKRDVQERGRDLESVIEQYVKTVRPMYEQFIEPTKKYADIIIPSG 190 (218)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhChhhhhccCcccccceEEeecC
Confidence 886665555 5777655555557889999998 9999999999999864
No 393
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.75 E-value=5.5e-18 Score=161.63 Aligned_cols=204 Identities=16% Similarity=0.120 Sum_probs=157.5
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-C----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-P---- 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-~---- 149 (313)
-++|++++|+..-... ...+++|||+|..|||+||.|-.|-|-+.|+..|+|+.+ |.+|+|.++|++. .
T Consensus 255 ~~vL~V~~L~v~~~~~---~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~---~~~G~I~l~G~~v~~~~~~ 328 (501)
T COG3845 255 EVVLEVEDLSVKDRRG---VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK---PASGRILLNGKDVLGRLSP 328 (501)
T ss_pred CeEEEEeeeEeecCCC---CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc---cCCceEEECCEeccccCCH
Confidence 4589999999876542 238999999999999999999999999999999999998 8899999999874 1
Q ss_pred -----CeEEEEecCCCC-CCcccCCcccChHHHHHhc------C-CCCCccHHHHHHHHHHhhc---CCCccCCCCCCcC
Q 021362 150 -----DVATVLPMDGFH-LYLSQLDAMEDPKEAHARR------G-APWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGV 213 (313)
Q Consensus 150 -----~~i~~v~qd~~~-~~~~~ltv~e~~~~~~~~~------~-~~~~~~~~~~~~~l~~l~~---~~~~~~~~LSgG~ 213 (313)
.-++|||.|... -.-..+++.||+.+..... + ..+......+.++++.++- ....++..||||.
T Consensus 329 ~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGN 408 (501)
T COG3845 329 RERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGN 408 (501)
T ss_pred HHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcc
Confidence 248999998622 1223589999998764321 1 1112233445667777762 3445677999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccce---EEEEcChHHHHH---HHh----hcccccCCch
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEK---WFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~~---i~vtHd~~~~~~---rv~----griv~~G~~~ 279 (313)
+||+-+|+=+..++++|+..-|+-.||- .+.+.|.+..+.+ ++|+-|+++++. |+. ||++...+++
T Consensus 409 qQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~ 488 (501)
T COG3845 409 QQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPE 488 (501)
T ss_pred eehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecccccc
Confidence 9999999999999999999999999998 4555555555553 699999999998 554 8988777776
Q ss_pred HHHHH
Q 021362 280 DVAKW 284 (313)
Q Consensus 280 ev~~~ 284 (313)
+...+
T Consensus 489 ~~t~~ 493 (501)
T COG3845 489 EATRE 493 (501)
T ss_pred cCCHH
Confidence 64433
No 394
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.75 E-value=2.2e-18 Score=151.42 Aligned_cols=143 Identities=13% Similarity=0.016 Sum_probs=98.4
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHH----HHhcccCCCCceeecCC-----CCCCCeEEEEecCCC-CCC--cccCCc
Q 021362 102 SNVNVKHIVGLAGPPGAGKSTLAAEVV----RRINKIWPQKASSFDSQ-----VKPPDVATVLPMDGF-HLY--LSQLDA 169 (313)
Q Consensus 102 l~i~~Geiv~l~GpNGsGKSTLlk~l~----gl~~~~~p~~G~i~~~g-----~~~~~~i~~v~qd~~-~~~--~~~ltv 169 (313)
+++.+| +++|+||||||||||+++|. |... |++|.+..+. ......+++++|+.. ..+ ...+++
T Consensus 18 l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~---~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~ 93 (204)
T cd03240 18 IEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP---PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAI 93 (204)
T ss_pred EecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC---cccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhH
Confidence 455566 99999999999999999996 6555 7777554111 113346888998852 111 112466
Q ss_pred ccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCc------chhhhhhccCceEEEEcCCccccChh-
Q 021362 170 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDP------VEDDILVGLQHKVVIVDGNYLFLDGG- 242 (313)
Q Consensus 170 ~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqR------v~ia~al~~~ar~Li~d~~~lllDE~- 242 (313)
++|+.+. + ...+.+.+ +..+.+||+||+|| ++++++++.+++++++|+|+..||+.
T Consensus 94 ~~~~~~~------~----~~~~~~~~-------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~ 156 (204)
T cd03240 94 LENVIFC------H----QGESNWPL-------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEEN 156 (204)
T ss_pred hhceeee------c----hHHHHHHH-------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHH
Confidence 6666432 1 12222222 55677999999996 68888999999999999999999973
Q ss_pred ----hHHHHHhhcc----ceEEEEcChHHHH
Q 021362 243 ----VWKDVSSMFD----EKWFIEVDLDTAM 265 (313)
Q Consensus 243 ----~~~~l~~l~~----~~i~vtHd~~~~~ 265 (313)
+.+.|.++.+ ..+++||+++.+.
T Consensus 157 ~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~ 187 (204)
T cd03240 157 IEESLAEIIEERKSQKNFQLIVITHDEELVD 187 (204)
T ss_pred HHHHHHHHHHHHHhccCCEEEEEEecHHHHh
Confidence 4455555544 2479999988764
No 395
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.73 E-value=1.7e-17 Score=160.38 Aligned_cols=183 Identities=13% Similarity=-0.011 Sum_probs=128.1
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
++|++++|+..-.+. ...+++|+||+|.+|+-+.|.||||||||.|+|.++|+-+ -.+|++..-.....+.+-|+
T Consensus 432 n~i~~e~v~l~tPt~--g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp---~~~G~l~k~~~~~~~~lffl 506 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTN--GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP---STGGKLTKPTDGGPKDLFFL 506 (659)
T ss_pred ceEEeeeeeecCCCC--CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc---cCCCeEEecccCCCCceEEe
Confidence 589999999988763 2237899999999999999999999999999999999985 58899886554444568999
Q ss_pred ecCCCCCCcccCCcccChHHHHHhc-CCCCCccHHHHHHHHHHhhc--------CCC----c-cCCCCCCcCCCcchhhh
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRN--------QGS----V-YAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~--------~~~----~-~~~~LSgG~kqRv~ia~ 221 (313)
||-||... =|.+|.+-++.... ...+..+.+++.+.|+.++. +.+ . -...||+||+||+++||
T Consensus 507 PQrPYmt~---GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~AR 583 (659)
T KOG0060|consen 507 PQRPYMTL---GTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFAR 583 (659)
T ss_pred cCCCCccc---cchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHH
Confidence 99987543 28889888874322 12223344556666665541 112 1 23399999999999966
Q ss_pred hhccCceEEEEcCCccccChhhHHHHHhhccc----eEEEEcChHHHHH
Q 021362 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE----KWFIEVDLDTAMQ 266 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~----~i~vtHd~~~~~~ 266 (313)
.+-++|+.-++|+-+.-+||++-..+-+.+.+ -|-|.|-..+...
T Consensus 584 Lfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~kf 632 (659)
T KOG0060|consen 584 LFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWKF 632 (659)
T ss_pred HHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHhh
Confidence 66666665555555555555544444444433 3566787766554
No 396
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.73 E-value=1e-16 Score=139.84 Aligned_cols=178 Identities=24% Similarity=0.354 Sum_probs=129.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~ 188 (313)
++||.||||||||||+++|.+++. ...+.++++|+++.. ++..+........++.+..++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~----------------~~~~~v~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 61 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG----------------NPKVVIISQDSYYKD---LSHEELEERKNNNYDHPDAFDF 61 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC----------------CCCeEEEEecccccc---cccccHHHhccCCCCCCCcccH
Confidence 589999999999999999999883 123567888876533 3333333322223455666677
Q ss_pred HHHHHHHHHhhcCCCc--cCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcChHHHHH
Q 021362 189 LLLLNCLKNLRNQGSV--YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQ 266 (313)
Q Consensus 189 ~~~~~~l~~l~~~~~~--~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~~~~ 266 (313)
+.+.+.|..+...... +...+|.|++++..+ ...++.+++.|+.+++.++ .+.+.++..|+|..+.+....
T Consensus 62 ~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~----~~~~~~d~~i~v~~~~~~~~~ 134 (198)
T cd02023 62 DLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK----ELRDLMDLKIFVDTDADVRLI 134 (198)
T ss_pred HHHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccch----hHHhhcCeEEEEECChhHHHH
Confidence 7777888888754443 334778888776555 4567889999999988874 455667888999999998877
Q ss_pred HHhhccc-ccCCchHHHHHHHHhcCCchhH-HhhhcccCccEEeecCC
Q 021362 267 RVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 312 (313)
Q Consensus 267 rv~griv-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~~ 312 (313)
|.+.|.. ..|...+-...+|.....++.. ++.+.+..||+||++.+
T Consensus 135 R~~~Rd~~~rg~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~ii~~~~ 182 (198)
T cd02023 135 RRIERDIVERGRDLESVINQYLKFVKPMHEQFIEPTKRYADVIIPRGG 182 (198)
T ss_pred HHHHHHhhhcCCCHHHHHHHHHHhhhhhHHHhCccchhceeEEECCCC
Confidence 7775654 5676666556778888888886 88889999999998653
No 397
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.72 E-value=8.4e-18 Score=182.61 Aligned_cols=117 Identities=10% Similarity=-0.043 Sum_probs=83.2
Q ss_pred cCCcccChHHHHHh---cCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhc---cCceEEEEcCCc
Q 021362 166 QLDAMEDPKEAHAR---RGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVG---LQHKVVIVDGNY 236 (313)
Q Consensus 166 ~ltv~e~~~~~~~~---~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~---~~ar~Li~d~~~ 236 (313)
..|+.|++.+...- +........+++ ++|+.++.. .++.+.+|||||+||++||++++ .+++++++|+|+
T Consensus 762 ~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPT 840 (1809)
T PRK00635 762 GKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPT 840 (1809)
T ss_pred CCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCC
Confidence 35667777664331 112222233344 567777743 46677899999999999999997 589999999999
Q ss_pred cccCh----hhHHHHHhhccc---eEEEEcChHHHHH--HHh----------hcccccCCchHHHH
Q 021362 237 LFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 237 lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~--rv~----------griv~~G~~~ev~~ 283 (313)
..||. .+++.|.++.+. .|+||||++++.. |++ |++++.|+++++..
T Consensus 841 sGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 841 TGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 99999 455555555433 4799999999843 443 57889999998864
No 398
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.72 E-value=3e-17 Score=143.57 Aligned_cols=148 Identities=11% Similarity=0.035 Sum_probs=101.3
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCC-----ce----eecCCCCCCCeEEEEecCCCCCCccc
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-----AS----SFDSQVKPPDVATVLPMDGFHLYLSQ 166 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~-----G~----i~~~g~~~~~~i~~v~qd~~~~~~~~ 166 (313)
.++++++++.+| +.+|+||||||||||+..|...+. ... |. +.-.|. ....+.+.+++... .
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~---~~~~~~~r~~~~~~~i~~~~-~~~~i~~~~~~~~~-~--- 81 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG---GKASDTNRGSSLKDLIKDGE-SSAKITVTLKNQGL-D--- 81 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc---CCcccccccccHHHHhhCCC-CeEEEEEEEEcCCc-c---
Confidence 445667778877 789999999999999999986654 321 21 111111 12346666665321 1
Q ss_pred CCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhh----ccCceEEEEcCCccccCh-
Q 021362 167 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDG- 241 (313)
Q Consensus 167 ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al----~~~ar~Li~d~~~lllDE- 241 (313)
+| .........+.++++. ....+.++.+||+|||||++||+++ +.+++++++|+|+..+|.
T Consensus 82 ----~~---------~~~~~~~~~~~~~l~~-~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~ 147 (198)
T cd03276 82 ----AN---------PLCVLSQDMARSFLTS-NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMV 147 (198)
T ss_pred ----CC---------cCCHHHHHHHHHHhcc-ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHH
Confidence 11 1111123566677776 5455667889999999999999998 589999999999999999
Q ss_pred ---hhHHHHHhhcc------ceEEEEcChHHHHH
Q 021362 242 ---GVWKDVSSMFD------EKWFIEVDLDTAMQ 266 (313)
Q Consensus 242 ---~~~~~l~~l~~------~~i~vtHd~~~~~~ 266 (313)
.+.+.|.++.. ..++++|+++.+..
T Consensus 148 ~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~ 181 (198)
T cd03276 148 NRKISTDLLVKEAKKQPGRQFIFITPQDISGLAS 181 (198)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEECCccccccc
Confidence 46666666532 13588899999876
No 399
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.71 E-value=7e-18 Score=146.99 Aligned_cols=185 Identities=31% Similarity=0.477 Sum_probs=130.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHH--HHhcCCCCCc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA--HARRGAPWTF 186 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~--~~~~~~~~~~ 186 (313)
+|||.||+|||||||.+.|...+. . .|. .....+.++..|.++... ...+.-... ...++.|.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~---~-~~~------~~~~~~~~~~~d~~~~~~---~~~~~~~~~~~~~~~~~p~a~ 67 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN---K-RGI------PAMEMDIILSLDDFYDDY---HLRDRKGRGENRYNFDHPDAF 67 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT---T-CTT------TCCCSEEEEEGGGGBHHH---HHHHHHHHCTTTSSTTSGGGB
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC---c-cCc------CccceeEEEeeccccccc---chhhHhhccccccCCCCcccc
Confidence 689999999999999999999996 1 110 011135667777654221 111100000 0112345677
Q ss_pred cHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcChHHHHH
Q 021362 187 NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQ 266 (313)
Q Consensus 187 ~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~~~~ 266 (313)
+.+.+.+.|..+..+.....|.|+.....+.. ...+..+.+++|.|+-++++|+. ++++++..||++.+.++.+.
T Consensus 68 d~~~l~~~l~~L~~g~~i~~p~yd~~~~~~~~-~~~~~~~~~ivIvEG~~~l~~~~----l~~l~D~~ifld~~~~~~l~ 142 (194)
T PF00485_consen 68 DFDLLKEDLKALKNGGSIEIPIYDFSTGDRDP-WIIIISPSDIVIVEGIYALYDEE----LRDLFDLKIFLDADEDLRLE 142 (194)
T ss_dssp SHHHHHHHHHHHHTTSCEEEEEEETTTTEEEE-EEEEEES-SEEEEEETTTTSSHC----HGGG-SEEEEEEE-HHHHHH
T ss_pred CHHHHHHHHHHHhCCCccccccccccccccee-eeeecCCCCEEEEcccceeeeee----ecccceeEEEecccHHHHHH
Confidence 88888899999987777788888887777666 33345678999999999999964 88899999999999999998
Q ss_pred HHhhccc-ccCCchHHHHHHHHhcCCchhH-HhhhcccCccEEeecCC
Q 021362 267 RVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 312 (313)
Q Consensus 267 rv~griv-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~~ 312 (313)
|.+.|.+ +.|...+-+.++|. .++|+++ ||.|+++.||+||++.+
T Consensus 143 Rri~RD~~~rG~~~~~~~~~~~-~~~~~~~~~I~p~~~~ADivi~~~~ 189 (194)
T PF00485_consen 143 RRIQRDVAERGRSPEEVIAQYE-RVRPGYERYIEPQKERADIVIPSGP 189 (194)
T ss_dssp HHHHHHHHHS-S-HHHHHHHHH-THHHHHHHCTGGGGGG-SEEEESCT
T ss_pred HHhhhhccccCCcceeEEEEee-cCChhhhhheeccccccEEEECCCC
Confidence 8787766 57887666666677 7777766 99999999999999865
No 400
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.71 E-value=4.4e-17 Score=139.87 Aligned_cols=191 Identities=13% Similarity=0.008 Sum_probs=132.5
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCe-----
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV----- 151 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~----- 151 (313)
.|++.++.+.|.... +++-|+|++++.|....++|.||||||||+|+|+|-.- .-.|.|.+.|.+.-..
T Consensus 13 aievsgl~f~y~~~d---P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm---v~~~~v~VlgrsaFhDt~l~~ 86 (291)
T KOG2355|consen 13 AIEVSGLQFKYKVSD---PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM---VGGGVVQVLGRSAFHDTSLES 86 (291)
T ss_pred eEEEeccEEecccCC---ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc---ccCCeEEEcCcCccccccccc
Confidence 599999999997643 48999999999999999999999999999999999654 5558888888763221
Q ss_pred ---EEEEecCCCCC--CcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccC
Q 021362 152 ---ATVLPMDGFHL--YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 152 ---i~~v~qd~~~~--~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
..|+--.-... ........-.+.....+++.... +.++-+++++.++....-+...+|-|||+||.|++-+.++
T Consensus 87 Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~-dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~P 165 (291)
T KOG2355|consen 87 SGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGD-DPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKP 165 (291)
T ss_pred cCceeEecccccccccccccccccccccHHHHHhhccCC-ChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccc
Confidence 22222110000 00000000111111122333222 2355566666666666667789999999999999999999
Q ss_pred ceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccc
Q 021362 227 HKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHIS 274 (313)
Q Consensus 227 ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~ 274 (313)
-++|++|+-++=||- .+++.+++.+++ +++.||-.+=... .++ |+++.
T Consensus 166 fkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 166 FKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred eeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence 999999999998988 566666666654 4799999888777 333 66664
No 401
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.71 E-value=9.5e-17 Score=141.25 Aligned_cols=182 Identities=25% Similarity=0.375 Sum_probs=128.1
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~ 184 (313)
++|+++||+||||||||||++.|+++++ + ..++++++|+++.....+...+.. ...++.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~---~-------------~~~~~i~~D~~~~~~~~~~~~~~~---~~~~~~~~ 64 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG---K-------------LEIVIISQDNYYKDQSHLEMAERK---KTNFDHPD 64 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc---c-------------cCCeEecccccccChhhCCHHHhc---CCCCCCcc
Confidence 6899999999999999999999999985 2 235778898775432222211111 11223344
Q ss_pred CccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcChHHH
Q 021362 185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTA 264 (313)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~~ 264 (313)
..+...+.+.++.+..+.....+.++.-...+..- ........+++.|+.++++++ .+.+.++..|+++.+.+..
T Consensus 65 ~~~~~~l~~~l~~l~~g~~v~~p~yd~~~~~~~~~-~~~~~~~~~vIieG~~~~~~~----~~~~~~d~~I~v~~~~~~~ 139 (207)
T TIGR00235 65 AFDNDLLYEHLKNLKNGSPIDVPVYDYVNHTRPKE-TVHIEPKDVVILEGIMPLFDE----RLRDLMDLKIFVDTPLDIR 139 (207)
T ss_pred HhHHHHHHHHHHHHHCCCCEecccceeecCCCCCc-eEEeCCCCEEEEEehhhhchH----hHHHhCCEEEEEECChhHH
Confidence 55666677777777766666666665543333211 112345788999998887763 4667788889999999999
Q ss_pred HHHHhhccc-ccCCchHHHHHHHHhcCCchhH-HhhhcccCccEEeec
Q 021362 265 MQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKS 310 (313)
Q Consensus 265 ~~rv~griv-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~ 310 (313)
..|++.|.+ ..|...+...++|..+++++.. ++.+.+..||+||++
T Consensus 140 l~R~~~R~~~~rg~~~~~~~~~~~~~~~~~~~~~i~~~~~~Ad~vi~~ 187 (207)
T TIGR00235 140 LIRRIERDINERGRSLDSVIDQYRKTVRPMYEQFVEPTKQYADLIIPE 187 (207)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHhhhhhHHHhCcccccccEEEEcC
Confidence 888776654 4677777667778888889876 889999999999975
No 402
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.70 E-value=1.6e-17 Score=150.18 Aligned_cols=171 Identities=13% Similarity=0.062 Sum_probs=106.1
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC-------C--
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------P-- 148 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~-------~-- 148 (313)
|+++|. +.|.+.. .+ ...++ +++|+||||||||||+.+|++++. +..|++...+.. .
T Consensus 4 i~l~nf-~~~~~~~----~~-----~~~~~-~~~i~G~NGsGKStll~ai~~~l~---~~~~~~r~~~~~~~i~~~~~~~ 69 (247)
T cd03275 4 LELENF-KSYKGRH----VI-----GPFDR-FTCIIGPNGSGKSNLMDAISFVLG---EKSSHLRSKNLKDLIYRARVGK 69 (247)
T ss_pred EEEECc-cccCCCe----ee-----cCCCC-eEEEECCCCCCHHHHHHHHHHHhC---CCcccccccchhhhcccCcccc
Confidence 677776 6675432 22 23344 999999999999999999999997 777776543311 0
Q ss_pred ----CCeEEEEecC--CCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCC--------------------
Q 021362 149 ----PDVATVLPMD--GFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-------------------- 202 (313)
Q Consensus 149 ----~~~i~~v~qd--~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-------------------- 202 (313)
...+.+.++. +..... ..++.+.... ....+ .......+.++++.++...
T Consensus 70 ~~~~~~~v~~~f~~~~~~~~~~-~~~~~~~~~~-~~ing--k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p 145 (247)
T cd03275 70 PDSNSAYVTAVYEDDDGEEKTF-RRIITGGSSS-YRING--KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNP 145 (247)
T ss_pred CCCceEEEEEEEEcCCCcEEEE-EEEEECCceE-EEECC--EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccC
Confidence 1123334432 111000 0111111100 00111 1223445567777776321
Q ss_pred ----CccCCCCCCcCCCcchhhhhhccC----ceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH
Q 021362 203 ----SVYAPSFDHGVGDPVEDDILVGLQ----HKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 203 ----~~~~~~LSgG~kqRv~ia~al~~~----ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
+.++.+||+||+||++||++++.+ ++++++|+|+..||. .+.+.|.++.++ .|+||||.+....
T Consensus 146 ~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~ 224 (247)
T cd03275 146 PGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSK 224 (247)
T ss_pred cchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhh
Confidence 123369999999999999999864 899999999999999 456666666542 4799999776543
No 403
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.70 E-value=3.9e-17 Score=170.11 Aligned_cols=91 Identities=16% Similarity=0.166 Sum_probs=71.0
Q ss_pred HHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhcc---CceEEEEcCCccccCh----hhHHHHHhhccc---eEEE
Q 021362 191 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGL---QHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFI 257 (313)
Q Consensus 191 ~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~---~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~v 257 (313)
..++|+.++.. .++...+|||||+||+.||++++. ++.++++|+|+..||. .+++.|.++.+. .|++
T Consensus 808 ~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi 887 (924)
T TIGR00630 808 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVI 887 (924)
T ss_pred HHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 44566667643 356778999999999999999997 4899999999999999 456666666433 4799
Q ss_pred EcChHHHHH--HHh----------hcccccCCchHH
Q 021362 258 EVDLDTAMQ--RVL----------KRHISTGKPPDV 281 (313)
Q Consensus 258 tHd~~~~~~--rv~----------griv~~G~~~ev 281 (313)
+||++++.. +++ |++++.|+++++
T Consensus 888 ~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 888 EHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred eCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 999998865 443 578888888765
No 404
>PRK05439 pantothenate kinase; Provisional
Probab=99.69 E-value=2.2e-16 Score=146.22 Aligned_cols=191 Identities=25% Similarity=0.334 Sum_probs=141.7
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~ 184 (313)
...-++||.|++|||||||++.|..++. ... ....+.++++|+|+.+...+. ++ -....+|.|.
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~---~~~---------~~~~v~vi~~DdFy~~~~~l~--~~--~l~~~kg~Pe 147 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLS---RWP---------EHPKVELVTTDGFLYPNAVLE--ER--GLMKRKGFPE 147 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH---hhC---------CCCceEEEeccccccCHHHHh--hh--hccccCCCcc
Confidence 3456999999999999999999999885 110 113478899999887653222 11 0112467888
Q ss_pred CccHHHHHHHHHHhhcCCC-ccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChh--hHHHHHhhccceEEEEcCh
Q 021362 185 TFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG--VWKDVSSMFDEKWFIEVDL 261 (313)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~-~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~--~~~~l~~l~~~~i~vtHd~ 261 (313)
+++.+.+.+.|..+..+.. ..+|.||.-...++.-......+++++|+|+-+++.++. -+..+.++++..|||+-|.
T Consensus 148 s~D~~~l~~~L~~Lk~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~ 227 (311)
T PRK05439 148 SYDMRALLRFLSDVKSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADE 227 (311)
T ss_pred cccHHHHHHHHHHHHcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCH
Confidence 9999999999999987664 788888888777764333445678999999999886664 4788899999999999999
Q ss_pred HHHHHHHhhcccc----------------cCCchH----HHHHHHHhcCCchh-HHhhhcccCccEEeecC
Q 021362 262 DTAMQRVLKRHIS----------------TGKPPD----VAKWRIEYNDRPNA-ELIMKSKKNADLVIKSI 311 (313)
Q Consensus 262 ~~~~~rv~griv~----------------~G~~~e----v~~~~~~~~~~~~~-~~i~~~~~~ad~ii~~~ 311 (313)
+.+.+|.+.|.+. .|-+.+ .+.+.|..++.||. +||.|++..||+|++.-
T Consensus 228 ~~~~~w~i~R~~~lr~~~~rdp~s~~~~~~~~s~~~a~~~a~~~w~~~~~pn~~~~I~Ptk~~ADlIi~~~ 298 (311)
T PRK05439 228 DLIEKWYIERFLKLRETAFSDPDSYFHRYAKLSEEEAIAIARQIWDEINLPNLEENILPTRERADLILHKG 298 (311)
T ss_pred HHHHHHHHHHHHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHhcchhhHHHhccCCCcCCCEEEeCC
Confidence 9887754432221 233222 45667889999999 59999999999999753
No 405
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=6.1e-17 Score=154.79 Aligned_cols=178 Identities=13% Similarity=0.061 Sum_probs=134.5
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEE
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~ 154 (313)
-|.+++..|++.|.... ...+.++++.++.-..++++|+||+||||++|++.|-+. |.+|.+.+.+ +.+++|
T Consensus 360 ~p~l~i~~V~f~y~p~~--y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~---~~rgi~~~~~---r~ri~~ 431 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSE--YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT---PTRGIVGRHP---RLRIKY 431 (582)
T ss_pred CCeeEEEeeeccCCCcc--hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC---cccceeeecc---cceecc
Confidence 35899999999997532 248999999999999999999999999999999999888 9999887764 456888
Q ss_pred EecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCceEEE
Q 021362 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 155 v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~ar~Li 231 (313)
.+|.-. .. +....+....+.. -.|.. ..+.+++.|..+|.. ....+..||||||-||++|.....+|-+|+
T Consensus 432 f~Qhhv--d~--l~~~v~~vd~~~~-~~pG~-~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLV 505 (582)
T KOG0062|consen 432 FAQHHV--DF--LDKNVNAVDFMEK-SFPGK-TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLV 505 (582)
T ss_pred hhHhhh--hH--HHHHhHHHHHHHH-hCCCC-CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEE
Confidence 888632 21 2222222111111 11222 456788889999843 333567899999999999999999999999
Q ss_pred EcCCccccChh----hHHHHHhhccceEEEEcChHHHHH
Q 021362 232 VDGNYLFLDGG----VWKDVSSMFDEKWFIEVDLDTAMQ 266 (313)
Q Consensus 232 ~d~~~lllDE~----~~~~l~~l~~~~i~vtHd~~~~~~ 266 (313)
+|+|+.-||-+ +.+.|+.+...+|+||||.+++..
T Consensus 506 LDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~ 544 (582)
T KOG0062|consen 506 LDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISS 544 (582)
T ss_pred ecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhh
Confidence 99999999974 344444444556899999999987
No 406
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.68 E-value=1.2e-15 Score=134.28 Aligned_cols=183 Identities=26% Similarity=0.381 Sum_probs=128.2
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~ 184 (313)
.++.+++|.|+||||||||++.|++.+. ...+.++++|+++.....++..+.. ...++.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~----------------~~~~~~i~~D~~~~~~~~~~~~~~~---~~~~~~~~ 64 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG----------------DESIAVIPQDSYYKDQSHLSFEERV---KTNYDHPD 64 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC----------------CCceEEEeCCccccCcccCCHHHhc---ccCccCcc
Confidence 4788999999999999999999999883 1247789999876543222222211 11234556
Q ss_pred CccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcChHHH
Q 021362 185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTA 264 (313)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~~ 264 (313)
..+.+.+.+.|..+..+.....+.++.....+..- ........+++.|+.+++.++ .+.++++..|+|+-+.+..
T Consensus 65 ~~~~~~l~~~l~~l~~~~~v~~p~~d~~~~~~~~~-~~~~~~~~~vivEg~~l~~~~----~~~~~~d~~I~v~~~~~~~ 139 (209)
T PRK05480 65 AFDHDLLIEHLKALKAGKAIEIPVYDYTEHTRSKE-TIRVEPKDVIILEGILLLEDE----RLRDLMDIKIFVDTPLDIR 139 (209)
T ss_pred cccHHHHHHHHHHHHcCCccccCcccccccccCCC-eEEeCCCCEEEEEeehhcCch----hHhhhhceeEEEeCChhHH
Confidence 66777888888888755555555443322222211 011244678999999988763 5667788899999999999
Q ss_pred HHHHhhccc-ccCCchHHHHHHHHhcCCchhH-HhhhcccCccEEeecC
Q 021362 265 MQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 311 (313)
Q Consensus 265 ~~rv~griv-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~ 311 (313)
..|++.|.+ ..|...+-+.++|.....|..+ ++.+.+..||+||++.
T Consensus 140 ~~R~~~Rd~~~rg~~~e~~~~~~~~~~~~~~~~~i~~~~~~AD~vI~~~ 188 (209)
T PRK05480 140 LIRRLKRDVNERGRSLESVINQYLSTVRPMHLQFIEPSKRYADIIIPEG 188 (209)
T ss_pred HHHHHhhcchhcCCCHHHHHHHHHHhhhhhHHhhccHhhcceeEEecCC
Confidence 888876655 4577766666788888888776 8999999999999853
No 407
>PLN02318 phosphoribulokinase/uridine kinase
Probab=99.67 E-value=3.9e-16 Score=153.44 Aligned_cols=173 Identities=23% Similarity=0.329 Sum_probs=125.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCC
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT 185 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~ 185 (313)
.--+|||.||||||||||++.|++++ |.. +.+.+|+|+.... . + ...+..+..
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglL----p~v--------------gvIsmDdy~~~~~---~---i---~~nfD~P~a 116 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFM----PSI--------------AVISMDNYNDSSR---I---I---DGNFDDPRL 116 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhC----CCc--------------EEEEEcceecchh---h---h---CccCCChhh
Confidence 34699999999999999999999987 443 4455555431110 0 0 011223444
Q ss_pred ccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcChHHHH
Q 021362 186 FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAM 265 (313)
Q Consensus 186 ~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~~~ 265 (313)
.+...+.+.|+.+..+....+|.|+.-...|..-.......++++|+|+.+++. +.++++++..|||+.|.+..+
T Consensus 117 ~D~d~L~enL~~Lr~GksV~iPiYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~-----~~Lr~LlDlkIFVDtdvDirL 191 (656)
T PLN02318 117 TDYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALS-----EKLRPLLDLRVSVTGGVHFDL 191 (656)
T ss_pred cchhHHHHHHHHHhCCCceecCccccccCcccCCceeecCCCcEEEEechhhcc-----HhHHhhCCEEEEEcCCccHHH
Confidence 555667777888877777777877776666653222334568999999999975 478899999999997777766
Q ss_pred H-HHhhcccccCCchHHHHHHHHhcCCchhH-HhhhcccCccEEeec
Q 021362 266 Q-RVLKRHISTGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKS 310 (313)
Q Consensus 266 ~-rv~griv~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~ 310 (313)
. |+..++.+.|...+-+..+|...+.|+++ ||.|+++.||+||.+
T Consensus 192 ~RRI~RD~~eRGrs~EsVi~q~~~~VkP~y~~FIeP~kk~ADIII~n 238 (656)
T PLN02318 192 VKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVN 238 (656)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhcchHHHHhCcchhcceEEEec
Confidence 6 55566667787766666778889999998 999999999999965
No 408
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.66 E-value=6.4e-17 Score=154.89 Aligned_cols=167 Identities=13% Similarity=-0.001 Sum_probs=118.3
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEe
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~ 156 (313)
-|.++|+-..-.... + ++..++|.|++|--+.|.||||||||.|+|+|.|+.+ -..|...+ +++.++.|+|
T Consensus 481 gI~lenIpvItP~~~--v-vv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP---vy~g~L~~---P~~~~mFYIP 551 (728)
T KOG0064|consen 481 GIILENIPVITPAGD--V-LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP---VYNGLLSI---PRPNNIFYIP 551 (728)
T ss_pred ceEEecCceeccCcc--e-eecceeEEecCCceEEEECCCCccHHHHHHHHhccCc---ccCCeeec---CCCcceEecc
Confidence 377888877775532 1 7799999999999999999999999999999999985 45555544 3556799999
Q ss_pred cCCCCCCcccCCcccChHHHH-----HhcCCCCCccHHHHHHHHHHhhc--------C--CCccCC-CCCCcCCCcchhh
Q 021362 157 MDGFHLYLSQLDAMEDPKEAH-----ARRGAPWTFNPLLLLNCLKNLRN--------Q--GSVYAP-SFDHGVGDPVEDD 220 (313)
Q Consensus 157 qd~~~~~~~~ltv~e~~~~~~-----~~~~~~~~~~~~~~~~~l~~l~~--------~--~~~~~~-~LSgG~kqRv~ia 220 (313)
|-||.-. -|.+|.+-++- ..+|.. .+.+..+|+.+.+ + .-.... .||||+|||+++
T Consensus 552 QRPYms~---gtlRDQIIYPdS~e~~~~kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~m- 623 (728)
T KOG0064|consen 552 QRPYMSG---GTLRDQIIYPDSSEQMKRKGYT----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGM- 623 (728)
T ss_pred CCCccCc---CcccceeecCCcHHHHHhcCCC----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHH-
Confidence 9987542 36777776642 223332 2333444444431 1 112233 899999999999
Q ss_pred hhhccCceEEEEcCCccccCh-------hhHHHHHhhcc----ceEEEEcChHHHHH
Q 021362 221 ILVGLQHKVVIVDGNYLFLDG-------GVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 221 ~al~~~ar~Li~d~~~lllDE-------~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
||...+.|++.+||| ++-..|-+..+ .-+-|||.+..-..
T Consensus 624 ------ARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~gi~llsithrpslwk~ 674 (728)
T KOG0064|consen 624 ------ARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGISLLSITHRPSLWKY 674 (728)
T ss_pred ------HHHHhcCcchhhhhhhhcccccchHHHHHHHHHhcCceEEEeecCccHHHH
Confidence 888999999999999 33344444433 23588999988877
No 409
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.63 E-value=4e-16 Score=145.96 Aligned_cols=160 Identities=16% Similarity=0.127 Sum_probs=114.3
Q ss_pred ccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccC-----CCCceeecCCCCCCCeEEEEecCCCCCCcccCCc
Q 021362 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIW-----PQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDA 169 (313)
Q Consensus 95 ~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~-----p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv 169 (313)
.+|+|+||+|++|++++|+|+||||||||+++|+|.....+ |++|.|.+--.. ..+.+|-... +.++
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt---~~a~iPge~E----p~f~- 468 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT---VSALIPGEYE----PEFG- 468 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc---hhhccCcccc----cccC-
Confidence 48999999999999999999999999999999999864221 788887653211 1223333211 1122
Q ss_pred ccChHHHHHhcCCCCCccHHHHHHHHHHhhcCC----CccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----
Q 021362 170 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG----SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG---- 241 (313)
Q Consensus 170 ~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE---- 241 (313)
.+++..-. + ...-|...+.++|.+.|... ..+..+||-|||.|+.||.+++..|.+++.|+--..|||
T Consensus 469 ~~tilehl--~--s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~ 544 (593)
T COG2401 469 EVTILEHL--R--SKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAV 544 (593)
T ss_pred chhHHHHH--h--hccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHH
Confidence 22222111 1 12335566788899888432 335669999999999999999999999999999999999
Q ss_pred hhHHHHHhhccc----eEEEEcChHHHHH
Q 021362 242 GVWKDVSSMFDE----KWFIEVDLDTAMQ 266 (313)
Q Consensus 242 ~~~~~l~~l~~~----~i~vtHd~~~~~~ 266 (313)
.+...|.++..+ .+.+||..+....
T Consensus 545 rVArkiselaRe~giTlivvThrpEv~~A 573 (593)
T COG2401 545 RVARKISELAREAGITLIVVTHRPEVGNA 573 (593)
T ss_pred HHHHHHHHHHHHhCCeEEEEecCHHHHhc
Confidence 566666666643 3699999988755
No 410
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.61 E-value=3e-15 Score=156.52 Aligned_cols=188 Identities=14% Similarity=0.111 Sum_probs=142.5
Q ss_pred cccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-----CCeEEEEecCCCCCCcccCC
Q 021362 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PDVATVLPMDGFHLYLSQLD 168 (313)
Q Consensus 94 ~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-----~~~i~~v~qd~~~~~~~~lt 168 (313)
+.+|+|+++-+++|+.+.++||.|||||||++.++|-+....-..|+|.++|.+. ++.++|++|++.+++. ||
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~--lT 205 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPE--LT 205 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccce--eE
Confidence 4499999999999999999999999999999999999864444567999999762 3568999999888775 99
Q ss_pred cccChHHHHHhcCCCCC----ccHH----HHHHHHHHhhcC-------CCccCCCCCCcCCCcchhhhhhccCceEEEEc
Q 021362 169 AMEDPKEAHARRGAPWT----FNPL----LLLNCLKNLRNQ-------GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (313)
Q Consensus 169 v~e~~~~~~~~~~~~~~----~~~~----~~~~~l~~l~~~-------~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d 233 (313)
|+|-+.+.++.++.... ...+ ..+.+++.+|+. .+.-.+-.|||||+||.++.+++.+++++..|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 99999999877654211 1122 234677777732 34466699999999999999999999999999
Q ss_pred CCccccCh----hhHHHHHhhccc---eEEEE-c-ChHHHHH---HHh----hcccccCCchHHHH
Q 021362 234 GNYLFLDG----GVWKDVSSMFDE---KWFIE-V-DLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 234 ~~~lllDE----~~~~~l~~l~~~---~i~vt-H-d~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+..-.||. ++.+.|+.+.+. ..+|+ + -.+++.. .|+ |+++..|+.++++.
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 99999998 556666665543 33333 2 2223322 443 99999999888764
No 411
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=99.59 E-value=1.1e-14 Score=130.56 Aligned_cols=187 Identities=28% Similarity=0.421 Sum_probs=156.2
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCC
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~ 183 (313)
-+..-|+||.|+.|+||||+.+.+.-++. .||.+ ..+..+++|+|++++..+. .++ .+.++|.|
T Consensus 79 ~~~pfIIgiaGsvavGKST~ar~L~~ll~-~~~~~-----------~~v~lvpmDGFhy~n~~L~-~~g---lm~rKGfP 142 (283)
T COG1072 79 QQRPFIIGIAGSVAVGKSTTARILQALLS-RWPES-----------PKVDLVTMDGFHYPNAVLD-ERG---LMARKGFP 142 (283)
T ss_pred CCCCEEEEeccCccccHHHHHHHHHHHHh-hCCCC-----------CceEEEeccccccCHhHhh-hcc---ccccCCCC
Confidence 34567999999999999999999999996 23432 2478899999998864433 111 23568999
Q ss_pred CCccHHHHHHHHHHhh-cCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcChH
Q 021362 184 WTFNPLLLLNCLKNLR-NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLD 262 (313)
Q Consensus 184 ~~~~~~~~~~~l~~l~-~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~ 262 (313)
+++|...+.+.+..+. ...+..+|.||+-....+.-+..+..++++||+|+..+|+|+.-|-.+.+.++-.|+|+-|.+
T Consensus 143 eSyD~~~ll~fl~~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~ 222 (283)
T COG1072 143 ESYDVAALLRFLSDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEE 222 (283)
T ss_pred ccccHHHHHHHHHHHhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHH
Confidence 9999999999999998 555689999999999999889999999999999999999999989899999999999999999
Q ss_pred HHHHHHhhcccccCCchHHHHHHHHhcCCchhHHhhhcccCccE
Q 021362 263 TAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADL 306 (313)
Q Consensus 263 ~~~~rv~griv~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~ad~ 306 (313)
.+.+|.+.|....|.........+..++.++.+........++.
T Consensus 223 ~le~wyi~Rfl~~g~~a~~~~~~~~~~~~~~~~~~a~~~a~~~w 266 (283)
T COG1072 223 LLEERYIERFLKFGLTAFEDPASYFHNYAPLSEREAIESARAIW 266 (283)
T ss_pred HHHHHHHHHHHhcccchhhChhhHhhccCcchHHHHHHhhhhcc
Confidence 99999999999989888888888888999998855554444433
No 412
>PLN02348 phosphoribulokinase
Probab=99.57 E-value=5e-14 Score=133.27 Aligned_cols=193 Identities=21% Similarity=0.264 Sum_probs=132.0
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCC-----CCCCeEEEEecCCCCCCcccCCcccChHHHHHh
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV-----KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~-----~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~ 179 (313)
++.-++||.|++|||||||++.|...+.. .+.-..+|. .....+.++++|+|+.++. ..+... .. .
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~----~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr--~~r~~~--g~-t 117 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGG----AAKPPKGGNPDSNTLISDTTTVICLDDYHSLDR--TGRKEK--GV-T 117 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh----ccCCCccccccccccccCceEEEEcccccCCCh--hhHhhc--CC-c
Confidence 34469999999999999999999999851 111001111 1224567899998876532 111100 00 0
Q ss_pred cCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEc
Q 021362 180 RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEV 259 (313)
Q Consensus 180 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtH 259 (313)
.-.|...+.+.+.+.++.|..+.....|.|+.-...+..- -.+.+++++|.|+-+.+.|+ .++++++..|+|+.
T Consensus 118 ~ldP~a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~--e~I~p~~VVIVEGlh~L~~e----~lr~l~D~~IyVd~ 191 (395)
T PLN02348 118 ALDPRANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPP--ELIEPPKILVIEGLHPMYDE----RVRDLLDFSIYLDI 191 (395)
T ss_pred cCCcccccHHHHHHHHHHHHCCCcEEeeccccCCCCcCCc--EEcCCCcEEEEechhhccCc----cccccCcEEEEEEC
Confidence 0123455666788888888877667777666554433321 13456899999999999985 66778889999999
Q ss_pred ChHHHHHHHhhcccc-cCCchHHHHHHHHhcCCchhHHhhhcccCccEEeecCC
Q 021362 260 DLDTAMQRVLKRHIS-TGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSID 312 (313)
Q Consensus 260 d~~~~~~rv~griv~-~G~~~ev~~~~~~~~~~~~~~~i~~~~~~ad~ii~~~~ 312 (313)
+.+..+.|.+.|.++ +|...+-+.+++..+......||.|.+..||+||+-.+
T Consensus 192 ~~dvrl~RRI~RD~~eRG~S~EeV~~~i~ar~pd~~~yI~pqk~~ADiVI~v~p 245 (395)
T PLN02348 192 SDDVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADVVIEVLP 245 (395)
T ss_pred CHHHHHHHHHHhhHhhcCCCHHHHHHHHHhcCcchhhhcccccccCCEEEEecC
Confidence 999988877777775 78777767777876544445599999999999997553
No 413
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.56 E-value=1.5e-15 Score=143.56 Aligned_cols=170 Identities=16% Similarity=0.063 Sum_probs=107.3
Q ss_pred cceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeec-----------CCCCCC-
Q 021362 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-----------SQVKPP- 149 (313)
Q Consensus 82 ~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~-----------~g~~~~- 149 (313)
++..+||... . .|..+- ...+|.++||+||||-||||.+|+|+|.+. |.=|...- .|....
T Consensus 79 e~vHRYg~Ng--F-kL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~---PNLG~~~~pp~wdeVi~~FrGtELq~ 151 (591)
T COG1245 79 EVVHRYGVNG--F-KLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELK---PNLGRYEDPPSWDEVIKRFRGTELQN 151 (591)
T ss_pred cceeeccCCc--e-EEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccc---cCCCCCCCCCCHHHHHHHhhhhHHHH
Confidence 3567776532 0 222221 356899999999999999999999999998 88765321 111100
Q ss_pred -------Ce--EEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcch
Q 021362 150 -------DV--ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 150 -------~~--i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ 218 (313)
.. +..-+|--...+. -+...+...+.. ....-...++.++++ .-.++.+.+||||+.||++
T Consensus 152 YF~~l~~g~~r~v~K~QYVd~iPk---~~KG~v~elLk~-----~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~a 223 (591)
T COG1245 152 YFKKLYEGELRAVHKPQYVDLIPK---VVKGKVGELLKK-----VDERGKFDEVVERLGLENVLDRDVSELSGGELQRVA 223 (591)
T ss_pred HHHHHHcCCcceecchHHHHHHHH---HhcchHHHHHHh-----hhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHH
Confidence 00 1101110000000 000011111000 001123456666666 3467889999999999999
Q ss_pred hhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH
Q 021362 219 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 219 ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
||.+++++|.+.++|++..-||- ...+.|+++.. .+++|.||+.....
T Consensus 224 Iaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~ 278 (591)
T COG1245 224 IAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDY 278 (591)
T ss_pred HHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHH
Confidence 99999999999999999999998 56667777765 35799999988765
No 414
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.56 E-value=1.4e-13 Score=124.11 Aligned_cols=184 Identities=16% Similarity=0.113 Sum_probs=131.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHH---HhcCC--C
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH---ARRGA--P 183 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~---~~~~~--~ 183 (313)
++||.|++||||||+.+.|...+. . . ...+.++.+|.|+.+. ...-.+...... ..+.. |
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~---~-~----------g~~v~vI~~D~yyr~~-r~~~~~~~~~a~~~~~nfdHf~P 65 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA---R-E----------GIHPAVVEGDSFHRYE-RMEMKMAIAEALDAGRNFSHFGP 65 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH---h-c----------CCceEEEeccccccCC-chhHHHHHHHHhhcCCCCCCCCc
Confidence 589999999999999999998885 1 1 1246789999887643 222222211111 12334 7
Q ss_pred CCccHHHHHHHHHHhhcCCCccCCCCCC------------cCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhc
Q 021362 184 WTFNPLLLLNCLKNLRNQGSVYAPSFDH------------GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (313)
Q Consensus 184 ~~~~~~~~~~~l~~l~~~~~~~~~~LSg------------G~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~ 251 (313)
.+.+.+.+.+.++.++.+.....+.|.+ |....-. .+..++.+|+.|+-+.++. --...+++++
T Consensus 66 eAnd~dlL~~~l~~L~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~---~~~~p~dvIivEGLhg~~~-~~~~~lr~~~ 141 (277)
T cd02029 66 EANLFDLLEELFRTYGETGRGRSRYYLHSDEEAAPFNQEPGTFTPWE---DLPEDTDLLFYEGLHGGVV-TEGYNVAQHA 141 (277)
T ss_pred ccccHHHHHHHHHHHHcCCCcccceeeccccccccccCCCCccCCcc---cccCCCcEEEECCCCcccc-cccHHHHHhC
Confidence 7888899999999998776666666643 4332111 1235699999999874332 0125788999
Q ss_pred cceEEEEcChHHHHHHHhhccc-ccCCchHHHHHHHHhcCCchhH-HhhhcccCccEEeecCC
Q 021362 252 DEKWFIEVDLDTAMQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 312 (313)
Q Consensus 252 ~~~i~vtHd~~~~~~rv~griv-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~~ 312 (313)
+-.|+|+-+.++...|.+-|.+ ++|...|-+.++|..+. |++. ||.|++..||+++..++
T Consensus 142 DlkIfVd~~~dlr~irRI~RD~~ERGrs~EsVi~qilrrm-pdy~~yI~PQ~~~tDI~fqr~p 203 (277)
T cd02029 142 DLLVGVVPIINLEWIQKIHRDTAERGYSAEAVMDTILRRM-PDYINYICPQFSRTDINFQRVP 203 (277)
T ss_pred CeEEEecCcHHHHHHHHHHhhhHhhCCCHHHHHHHHHHhC-chHHhhCCcccccCcEEEeccC
Confidence 9999999999988887776666 57998887777788777 8877 99999999999998765
No 415
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.54 E-value=1.4e-14 Score=126.88 Aligned_cols=130 Identities=9% Similarity=0.030 Sum_probs=85.1
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHH
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~ 175 (313)
+++|++|+. |++++|+||||||||||+|+|+|... +...|...+.. .+++|. ..++. .+++.||+.+
T Consensus 16 v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~--------l~~~G~~v~a~-~~~~q~-~~l~~-~~~~~d~l~~ 82 (199)
T cd03283 16 VANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI--------LAQAGAPVCAS-SFELPP-VKIFT-SIRVSDDLRD 82 (199)
T ss_pred ecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH--------HHHcCCEEecC-ccCccc-ceEEE-eccchhcccc
Confidence 778887776 69999999999999999999999773 11223222111 245664 33332 4899999876
Q ss_pred HHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhH-----HHHHhh
Q 021362 176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW-----KDVSSM 250 (313)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~-----~~l~~l 250 (313)
....+ .....++.++++.++. ..++++++|+++..+|.... ..++.+
T Consensus 83 ~~s~~----~~e~~~~~~iL~~~~~------------------------~~p~llllDEp~~glD~~~~~~l~~~ll~~l 134 (199)
T cd03283 83 GISYF----YAELRRLKEIVEKAKK------------------------GEPVLFLLDEIFKGTNSRERQAASAAVLKFL 134 (199)
T ss_pred ccChH----HHHHHHHHHHHHhccC------------------------CCCeEEEEecccCCCCHHHHHHHHHHHHHHH
Confidence 54221 1122455666666541 34899999999999998322 234444
Q ss_pred ccc---eEEEEcChHHHHH
Q 021362 251 FDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 251 ~~~---~i~vtHd~~~~~~ 266 (313)
.+. .+++||+++++..
T Consensus 135 ~~~~~tiiivTH~~~~~~~ 153 (199)
T cd03283 135 KNKNTIGIISTHDLELADL 153 (199)
T ss_pred HHCCCEEEEEcCcHHHHHh
Confidence 332 4799999998865
No 416
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.53 E-value=2.1e-13 Score=124.87 Aligned_cols=176 Identities=22% Similarity=0.329 Sum_probs=112.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~ 188 (313)
++||+|+||||||||++.|+++++ +..|. ++.+|+++... ..+....+. ..-.+...+.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~---~~~~~-------------vi~~Dd~~~~~----~~~r~~~g~-~~~~p~~~~~ 59 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFG---SDLVT-------------VICLDDYHSLD----RKGRKETGI-TALDPRANNF 59 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhC---CCceE-------------EEECcccccCC----HHHHHHhhc-ccccccchhH
Confidence 589999999999999999999997 54332 34555443221 001000000 0001222334
Q ss_pred HHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcChHHHHHHH
Q 021362 189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRV 268 (313)
Q Consensus 189 ~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~~~~rv 268 (313)
+.+.+.++.+..+.....|.|+.-......- ....+.++++.|+.+++.+ ..++++++..|+|+.+.+....|.
T Consensus 60 d~l~~~l~~Lk~g~~i~~P~y~~~~~~~~~~--~~i~~~~ivIvEG~~~l~~----~~l~~~~D~~I~vd~~~e~r~~r~ 133 (273)
T cd02026 60 DLMYEQLKALKEGQAIEKPIYNHVTGLIDPP--ELIKPTKIVVIEGLHPLYD----ERVRELLDFSVYLDISDEVKFAWK 133 (273)
T ss_pred HHHHHHHHHHHCCCCcccccccccCCCcCCc--EEcCCCCEEEEeeehhhCc----hhhhhhccEEEEEECChhHHHHHH
Confidence 4455666666655555555555433322110 1123468999999998887 367778899999999999888777
Q ss_pred hhcccc-cCCchHHHHHHHHhcCCchhH-HhhhcccCccEEeecCC
Q 021362 269 LKRHIS-TGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 312 (313)
Q Consensus 269 ~griv~-~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~~ 312 (313)
+.|.+. .|...+-+.+++... .+.++ ||.|++..||+||...+
T Consensus 134 i~Rd~~rrG~s~e~v~~~i~~r-~~~~~~~I~P~~~~ADvVI~~~p 178 (273)
T cd02026 134 IQRDMAERGHSLEDVLASIEAR-KPDFEAYIDPQKQYADVVIQVLP 178 (273)
T ss_pred HHHHHHHhCCCHHHHHHHHHhh-chhHHHHhccccccCcEEEEccC
Confidence 777775 576666666667654 55555 99999999999997653
No 417
>PRK07429 phosphoribulokinase; Provisional
Probab=99.48 E-value=1.7e-12 Score=121.69 Aligned_cols=176 Identities=22% Similarity=0.338 Sum_probs=117.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcC----
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG---- 181 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~---- 181 (313)
+--++||.|+||||||||++.|++++. ++. +.++.+|+++.... . .....+
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll~---~~~-------------~~vi~~Dd~~~~~~--~-------~r~~~g~~~l 61 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLLG---EEL-------------VTVICTDDYHSYDR--K-------QRKELGITAL 61 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHhc---cCc-------------eEEEEecccccCCH--H-------HHHhcCCccc
Confidence 345999999999999999999999996 543 34456665542210 0 011111
Q ss_pred CCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcCh
Q 021362 182 APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDL 261 (313)
Q Consensus 182 ~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~ 261 (313)
.+...+.+.+.+.++.+..+.....|.+.........- ......++++.|+.+.+.+ +.++++++..|+++-+.
T Consensus 62 ~p~~~~~d~l~~~l~~L~~g~~I~~P~yd~~~g~~~~~--~~i~p~~iVIvEG~~~l~~----~~lr~~~D~~I~Vda~~ 135 (327)
T PRK07429 62 DPRANNLDIMYEHLKALKTGQPILKPIYNHETGTFDPP--EYIEPNKIVVVEGLHPLYD----ERVRELYDFKVYLDPPE 135 (327)
T ss_pred CccchHHHHHHHHHHHHHCCCceecceeecCCCCcCCc--EecCCCcEEEEechhhcCc----HhHHhhCCEEEEEECCH
Confidence 13344456677777777765555555443332222211 1123468999999998887 36777889999999999
Q ss_pred HHHHHHHhhcccc-cCCchHHHHHHHHhcCCchhHHhhhcccCccEEeecCC
Q 021362 262 DTAMQRVLKRHIS-TGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSID 312 (313)
Q Consensus 262 ~~~~~rv~griv~-~G~~~ev~~~~~~~~~~~~~~~i~~~~~~ad~ii~~~~ 312 (313)
+....|.+.|... .|...+-+..++..+......||.|++..||+||+..+
T Consensus 136 evr~~Rri~Rd~~rrG~s~eei~~~i~~r~pd~~~yI~P~k~~ADiVI~~~p 187 (327)
T PRK07429 136 EVKIAWKIKRDMAKRGHTYEQVLAEIEAREPDFEAYIRPQRQWADVVIQFLP 187 (327)
T ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHhCccHhhhhcccccCCCEEEEcCC
Confidence 9988877777775 57766666666765544444499999999999998765
No 418
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.48 E-value=1e-13 Score=151.13 Aligned_cols=94 Identities=14% Similarity=0.121 Sum_probs=75.3
Q ss_pred HHHHHHHhh---cCCCccCCCCCCcCCCcchhhhhhccC---ceEEEEcCCccccCh----hhHHHHHhhccc---eEEE
Q 021362 191 LLNCLKNLR---NQGSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFI 257 (313)
Q Consensus 191 ~~~~l~~l~---~~~~~~~~~LSgG~kqRv~ia~al~~~---ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~v 257 (313)
..+.|..+| ....+...+|||||.||+-+|..|..+ ..++++|+|+..|+. .+++.+.++.+. .|+|
T Consensus 1679 ~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivi 1758 (1809)
T PRK00635 1679 PLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYI 1758 (1809)
T ss_pred HHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 345566666 345678889999999999999999865 679999999999999 455555555443 5799
Q ss_pred EcChHHHHH--HHh----------hcccccCCchHHHHH
Q 021362 258 EVDLDTAMQ--RVL----------KRHISTGKPPDVAKW 284 (313)
Q Consensus 258 tHd~~~~~~--rv~----------griv~~G~~~ev~~~ 284 (313)
+||++.+.. +++ |++++.|+|++++..
T Consensus 1759 eH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~ 1797 (1809)
T PRK00635 1759 DHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISAS 1797 (1809)
T ss_pred eCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhC
Confidence 999999998 666 799999999999763
No 419
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.46 E-value=2.8e-14 Score=124.95 Aligned_cols=128 Identities=10% Similarity=0.030 Sum_probs=79.5
Q ss_pred cccccccccCCCc-EEEEECCCCCcHHHHHHHHH-HHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccCh
Q 021362 96 PTSALASNVNVKH-IVGLAGPPGAGKSTLAAEVV-RRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDP 173 (313)
Q Consensus 96 ~L~~vsl~i~~Ge-iv~l~GpNGsGKSTLlk~l~-gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~ 173 (313)
.+-++||++.+|+ +++|.||||||||||+|+|+ +.+. +..|- +++...... ....+.+
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~---~~~G~-------------~vp~~~~~~----~~~~~~~ 75 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLM---AQSGL-------------PIPAAEGSS----LPVFENI 75 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHH---HHcCC-------------Ccccccccc----CcCccEE
Confidence 4557899999995 89999999999999999998 3332 22221 111110000 0000000
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChh----hH-HH
Q 021362 174 KEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VW-KD 246 (313)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~----~~-~~ 246 (313)
+..++ ........+||+||+|++.++.++ .+++++++|++...+|.. ++ ..
T Consensus 76 ---------------------~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~ 133 (200)
T cd03280 76 ---------------------FADIGDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAI 133 (200)
T ss_pred ---------------------EEecCchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHH
Confidence 00011 112234568999999999998764 688999999999999983 32 23
Q ss_pred HHhhcc---ceEEEEcChHHHH
Q 021362 247 VSSMFD---EKWFIEVDLDTAM 265 (313)
Q Consensus 247 l~~l~~---~~i~vtHd~~~~~ 265 (313)
++.+.+ ..+++||+.+...
T Consensus 134 l~~l~~~~~~vi~~tH~~~l~~ 155 (200)
T cd03280 134 LEELLERGALVIATTHYGELKA 155 (200)
T ss_pred HHHHHhcCCEEEEECCHHHHHH
Confidence 444433 2479999865443
No 420
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.46 E-value=1.4e-13 Score=138.00 Aligned_cols=91 Identities=19% Similarity=0.203 Sum_probs=73.4
Q ss_pred HHHHHhhc---CCCccCCCCCCcCCCcchhhhhhccCc---eEEEEcCCccccCh----hhHHHHHhhccc---eEEEEc
Q 021362 193 NCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEV 259 (313)
Q Consensus 193 ~~l~~l~~---~~~~~~~~LSgG~kqRv~ia~al~~~a---r~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtH 259 (313)
+.|..+|+ ...+...+|||||.||+-+|.-|...+ .+.|+|+|+..|-- ++++.|.++.+. +|+|.|
T Consensus 804 qtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEH 883 (935)
T COG0178 804 QTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEH 883 (935)
T ss_pred HHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 33444452 345677899999999999999998877 88999999998876 566666666654 579999
Q ss_pred ChHHHHH--HHh----------hcccccCCchHHHH
Q 021362 260 DLDTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 260 d~~~~~~--rv~----------griv~~G~~~ev~~ 283 (313)
+++.+.. +++ |++++.|+|+++++
T Consensus 884 NLdVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 884 NLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred ccceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 9999987 777 79999999999987
No 421
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=3.1e-13 Score=127.46 Aligned_cols=173 Identities=16% Similarity=0.057 Sum_probs=105.6
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEec
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~q 157 (313)
|.++|.+.+-.++. .+.+.|+.|-.|..+||+||||-||||||+.|+..--++ |..=. +-++-|
T Consensus 265 IKiEnF~ISA~Gk~----LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaI-PpnID-----------vLlCEQ 328 (807)
T KOG0066|consen 265 IKIENFDISAQGKL----LFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAI-PPNID-----------VLLCEQ 328 (807)
T ss_pred ceeeeeeeecccce----eeeccceEEEecceecccCCCCCchHHHHHHHHhhhccC-CCCCc-----------eEeeee
Confidence 88889888887776 899999999999999999999999999999998754211 32211 222333
Q ss_pred CCCCC-----------------------------CcccCCcccChHHHHH-hcCCCCCccHHHHHHHHHHhhcC---CCc
Q 021362 158 DGFHL-----------------------------YLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ---GSV 204 (313)
Q Consensus 158 d~~~~-----------------------------~~~~ltv~e~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~---~~~ 204 (313)
.-..- .....|+.|.+...+. ++.........+++.+|.-||.. .++
T Consensus 329 Evvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~r 408 (807)
T KOG0066|consen 329 EVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQER 408 (807)
T ss_pred eeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcC
Confidence 21100 0001122222221110 11111122334455566666622 345
Q ss_pred cCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccceEEEEcChHHHHH
Q 021362 205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEKWFIEVDLDTAMQ 266 (313)
Q Consensus 205 ~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~~i~vtHd~~~~~~ 266 (313)
+...+|||.|.||++|+||-..+-+|++|+|+.-||- -+-..|..+.+..++|+||..+...
T Consensus 409 Pt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~ 474 (807)
T KOG0066|consen 409 PTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDS 474 (807)
T ss_pred CccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHH
Confidence 6669999999999996665555555555555555554 2234455555566799999988765
No 422
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.45 E-value=8.1e-13 Score=113.78 Aligned_cols=175 Identities=22% Similarity=0.283 Sum_probs=115.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~ 188 (313)
+++|.|++|||||||.+.|...+. . . ...+.++.+|+|+.+. .. +.. ....+..+...+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~---~-~----------~~~~~~i~~Ddf~~~~--~~--~~~--~~g~~d~~~~~d~ 60 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR---V-N----------GIGPVVISLDDYYVPR--KT--PRD--EDGNYDFESILDL 60 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH---H-c----------CCCEEEEehhhcccCc--cc--ccc--cCCCCCCCccccH
Confidence 589999999999999999999985 1 1 1236678999876543 01 000 0011222223466
Q ss_pred HHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcChHH-HHHH
Q 021362 189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDT-AMQR 267 (313)
Q Consensus 189 ~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~-~~~r 267 (313)
+.+.+.+..+..+.....|.++.-..++..-......+..++|.|+.+++.+ .++++.+..|+++.+.+. .+.|
T Consensus 61 ~~l~~~l~~l~~~~~~~~p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~-----~l~~~~d~~I~vd~~~~~~rl~r 135 (179)
T cd02028 61 DLLNKNLHDLLNGKEVELPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALNE-----RLRSLLDIRVAVSGGVHLNRLLR 135 (179)
T ss_pred HHHHHHHHHHHCCCeeecccceeECCccCCCceEEeCCCCEEEEecHHhcCH-----hHHhhcCEEEEEeCCccHHHHHH
Confidence 7777888877766666666555444444332112345688999999998753 677788889999999997 6655
Q ss_pred Hhhccc-ccCCchHHHHHHHHhcCCchhH--HhhhcccCccEEeec
Q 021362 268 VLKRHI-STGKPPDVAKWRIEYNDRPNAE--LIMKSKKNADLVIKS 310 (313)
Q Consensus 268 v~griv-~~G~~~ev~~~~~~~~~~~~~~--~i~~~~~~ad~ii~~ 310 (313)
.+-|.+ +.|...+-..+++ ...|..+ ++.+.+..||+|+.+
T Consensus 136 ri~RD~~~rg~~~~~~i~~~--~~~~~~~~~~~~~~~~~ad~~~~~ 179 (179)
T cd02028 136 RVVRDIQFRGYSAELTILMW--PSVPSGEEFIIPPLQEAAIVMFNS 179 (179)
T ss_pred HHHHhHHhhCCCHHHHhhhc--ccccCchhhcCCCchhccceeccC
Confidence 555554 5787666555544 3455555 557789999999863
No 423
>PRK15453 phosphoribulokinase; Provisional
Probab=99.44 E-value=5.2e-12 Score=114.84 Aligned_cols=186 Identities=16% Similarity=0.098 Sum_probs=126.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCc-ccCCcccChHHHHH---hcC
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL-SQLDAMEDPKEAHA---RRG 181 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~-~~ltv~e~~~~~~~---~~~ 181 (313)
++-++||.|.+||||||+.+.|+..+. . ....+.++.+|.|+-++ .++.. ..+...+ .+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~---~-----------~~~~~~vi~~D~yh~ydr~~~~~--~~~~~~r~g~nfd 67 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR---R-----------ENINAAVVEGDSFHRYTRPEMKA--AIAKARAAGRHFS 67 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh---h-----------cCCCeEEEecccccccChhhHhh--hhHHHHhcCCCCC
Confidence 456999999999999999999998775 1 11235678899887532 11211 1111111 222
Q ss_pred C--CCCccHHHHHHHHHHhhcCCCccCCCCC------------CcCCCcchhhhhhccCceEEEEcCCccccChhhHHHH
Q 021362 182 A--PWTFNPLLLLNCLKNLRNQGSVYAPSFD------------HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 247 (313)
Q Consensus 182 ~--~~~~~~~~~~~~l~~l~~~~~~~~~~LS------------gG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l 247 (313)
. |.+.+.+.+.+.++.++.......+.|. -|.-.. ...+..++++|+.|+-+.+..- -...+
T Consensus 68 hf~PdAnd~dlL~~~l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~---~e~i~~p~dvIivEGLh~~~~~-~~~~l 143 (290)
T PRK15453 68 HFGPEANLFDELEQLFREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTP---WEPLPEGTDLLFYEGLHGGVVT-DQVDV 143 (290)
T ss_pred CCCCCcccHHHHHHHHHHHhcCCCcceeeccccccccccCCCCCCccCC---ceEecCCCcEEEEecccccccc-ccHHH
Confidence 3 6778888888888888754433333332 111100 0112345889999998776421 12568
Q ss_pred HhhccceEEEEcChHHHHHHHhhccc-ccCCchHHHHHHHHhcCCchhH-HhhhcccCccEEeecCC
Q 021362 248 SSMFDEKWFIEVDLDTAMQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 312 (313)
Q Consensus 248 ~~l~~~~i~vtHd~~~~~~rv~griv-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~~ 312 (313)
+++.+-.|+|+-+.++...|.+.|.+ ++|.+.|-+.+.|..+. |++. ||.|++..|||.+..++
T Consensus 144 r~~~DlkIfVdp~~dlr~irRI~RD~~ERGrs~EsVi~qilrrm-Pdy~~yI~PQ~~~tdInfqrvp 209 (290)
T PRK15453 144 AQHVDLLIGVVPIVNLEWIQKIHRDTSERGYSREAVMDTILRRM-PDYINYITPQFSRTHINFQRVP 209 (290)
T ss_pred HHhCCeeEeeCCcHhHHHHHHHHhhhHhhCCCHHHHHHHHHHhC-ChHhhhCCCCcccCcEEEEeCC
Confidence 88999999999999988887777776 57998887777788775 8877 99999999999988754
No 424
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.40 E-value=1.3e-13 Score=121.17 Aligned_cols=129 Identities=12% Similarity=0.076 Sum_probs=85.8
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHH
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~ 175 (313)
+.+|++|++++|++++|.||||+||||++++|+++.- ..+...+++-.. ..+++.+++.
T Consensus 18 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~---------------la~~G~~vpa~~-----~~l~~~d~I~- 76 (204)
T cd03282 18 IPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI---------------MAQIGCFVPAEY-----ATLPIFNRLL- 76 (204)
T ss_pred EEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH---------------HHHcCCCcchhh-----cCccChhhee-
Confidence 8999999999999999999999999999999998863 111112222211 1234444442
Q ss_pred HHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChh-----hHHHHH
Q 021362 176 AHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG-----VWKDVS 248 (313)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~-----~~~~l~ 248 (313)
..++. ........||+||+|. ..+..++.++.++++|++.-.+|.. .+..++
T Consensus 77 --------------------~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~ 135 (204)
T cd03282 77 --------------------SRLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILE 135 (204)
T ss_pred --------------------EecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHH
Confidence 11221 1233455888999875 4445667788888899988888771 233344
Q ss_pred hhcc---ceEEEEcChHHHHH
Q 021362 249 SMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 249 ~l~~---~~i~vtHd~~~~~~ 266 (313)
.+.+ ..+++||+.+.+..
T Consensus 136 ~l~~~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 136 CLIKKESTVFFATHFRDIAAI 156 (204)
T ss_pred HHHhcCCEEEEECChHHHHHH
Confidence 4432 35799999998865
No 425
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.40 E-value=6.8e-13 Score=117.36 Aligned_cols=64 Identities=13% Similarity=0.008 Sum_probs=49.2
Q ss_pred CccCCCCCCcCCCcchhhhhh----ccCceEEEEcCCccccCh----hhHHHHHhhccc-----eEEEEcChHHHHH
Q 021362 203 SVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE-----KWFIEVDLDTAMQ 266 (313)
Q Consensus 203 ~~~~~~LSgG~kqRv~ia~al----~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~-----~i~vtHd~~~~~~ 266 (313)
+..+.+||+||||++.++.++ +.+++++++|+|+..+|+ .+++.|.++.++ .+++|||+.....
T Consensus 121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~ 197 (213)
T cd03277 121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLN 197 (213)
T ss_pred ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCc
Confidence 445669999999998876543 478999999999999998 566666666433 3799999876654
No 426
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.35 E-value=1.4e-12 Score=110.45 Aligned_cols=121 Identities=12% Similarity=0.095 Sum_probs=78.7
Q ss_pred ccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhc
Q 021362 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180 (313)
Q Consensus 101 sl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~ 180 (313)
++.+.++.++.|+|||||||||+++.+....- ...|.+..... . +...+++.. .+.+
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~---~~~~~~~~~~~-~-~~g~~~~~~-------------~~~~----- 71 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALG---GAQSATRRRSG-V-KAGCIVAAV-------------SAEL----- 71 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHH---hcchhhhccCc-c-cCCCcceee-------------EEEE-----
Confidence 33445567999999999999999999888775 44433322100 0 000001110 0000
Q ss_pred CCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhcc----CceEEEEcCCccccCh----hhHHHHHhhcc
Q 021362 181 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDG----GVWKDVSSMFD 252 (313)
Q Consensus 181 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~----~ar~Li~d~~~lllDE----~~~~~l~~l~~ 252 (313)
-....+||+||+||+.++++++. .++++++|++.-.+|. .+.+.+.++..
T Consensus 72 ----------------------i~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~ 129 (162)
T cd03227 72 ----------------------IFTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLV 129 (162)
T ss_pred ----------------------ehheeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence 00011399999999999999976 6799999999999998 34555555543
Q ss_pred ---ceEEEEcChHHHHH
Q 021362 253 ---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 253 ---~~i~vtHd~~~~~~ 266 (313)
..+++||+.+....
T Consensus 130 ~~~~vii~TH~~~~~~~ 146 (162)
T cd03227 130 KGAQVIVITHLPELAEL 146 (162)
T ss_pred cCCEEEEEcCCHHHHHh
Confidence 34799999998765
No 427
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.35 E-value=6.4e-13 Score=104.21 Aligned_cols=68 Identities=19% Similarity=0.066 Sum_probs=55.4
Q ss_pred ccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC--------CCCeEEEEecCCCCCCccc
Q 021362 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------PPDVATVLPMDGFHLYLSQ 166 (313)
Q Consensus 95 ~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~--------~~~~i~~v~qd~~~~~~~~ 166 (313)
.+|++++|++++|++++|+||||||||||++++. +|++.++|.+ ..+.+++++|+ .++
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~--- 68 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE--- 68 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch---
Confidence 4899999999999999999999999999999975 5788888865 23446777777 223
Q ss_pred CCcccChHHH
Q 021362 167 LDAMEDPKEA 176 (313)
Q Consensus 167 ltv~e~~~~~ 176 (313)
.++++|+.++
T Consensus 69 ~ti~~Ni~~~ 78 (107)
T cd00820 69 IRLRLNIFLI 78 (107)
T ss_pred hhHHhhceee
Confidence 5899999874
No 428
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.34 E-value=3.7e-12 Score=109.59 Aligned_cols=58 Identities=12% Similarity=0.043 Sum_probs=47.2
Q ss_pred CCCcCCCcchhhhhhc----cCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH
Q 021362 209 FDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 209 LSgG~kqRv~ia~al~----~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
||+||+||++++++++ .+++++++|++...+|. .+.+.+.++... .+++||+++.+..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~ 163 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFEN 163 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhh
Confidence 9999999999999985 68999999999999998 455555555433 4799999887643
No 429
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.32 E-value=3e-12 Score=120.60 Aligned_cols=155 Identities=17% Similarity=0.185 Sum_probs=105.7
Q ss_pred ccccccccCCC-----cEEEEECCCCCcHHHHHHHHHHHhcccCCCCce-eecCCCCCCCeEEEEecCCCCCCcccCCcc
Q 021362 97 TSALASNVNVK-----HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLPMDGFHLYLSQLDAM 170 (313)
Q Consensus 97 L~~vsl~i~~G-----eiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~-i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~ 170 (313)
+-+..|.|+.| |++..+|.||.|||||+++++|.++ |+.|. + +.-.++|-+|.-. +...-||+
T Consensus 352 ~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~---pd~~~e~------p~lnVSykpqkis--pK~~~tvR 420 (592)
T KOG0063|consen 352 VGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK---PDEGGEI------PVLNVSYKPQKIS--PKREGTVR 420 (592)
T ss_pred eeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCC---CCccCcc------cccceeccccccC--ccccchHH
Confidence 34455555555 5899999999999999999999998 98763 2 2224777777632 22234555
Q ss_pred cChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChh------
Q 021362 171 EDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG------ 242 (313)
Q Consensus 171 e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~------ 242 (313)
+-+..- .+. .-.+...+.++++.|. ...++.+..||||++|||++|..+-.+|.+.+.|++...||.+
T Consensus 421 ~ll~~k--Ir~--ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~As 496 (592)
T KOG0063|consen 421 QLLHTK--IRD--AYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIAS 496 (592)
T ss_pred HHHHHH--hHh--hhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHH
Confidence 543321 111 1123344556666665 4457788899999999999999999999999999999999982
Q ss_pred --hHHHHHhhccceEEEEcChHHHHH
Q 021362 243 --VWKDVSSMFDEKWFIEVDLDTAMQ 266 (313)
Q Consensus 243 --~~~~l~~l~~~~i~vtHd~~~~~~ 266 (313)
+.+.|....+...+|.||+-.+..
T Consensus 497 kvikRfilhakktafvVEhdfImaTY 522 (592)
T KOG0063|consen 497 KVIKRFILHAKKTAFVVEHDFIMATY 522 (592)
T ss_pred HHHHHHHHhccchhhhhhhHHHHHHh
Confidence 222222222234589999766654
No 430
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.30 E-value=2.2e-12 Score=113.05 Aligned_cols=128 Identities=12% Similarity=0.047 Sum_probs=73.0
Q ss_pred ccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHH
Q 021362 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (313)
Q Consensus 99 ~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~ 178 (313)
..++++.+|++++|+||||||||||+++|++..-- +..|...... ...++++.|... .+...++
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~--~~~g~~~~~~---~~~i~~~dqi~~-----~~~~~d~------ 84 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLL--AQIGCFVPAE---SASIPLVDRIFT-----RIGAEDS------ 84 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHH--HHcCCCcccc---ccccCCcCEEEE-----EecCccc------
Confidence 34556678999999999999999999999954420 3333221110 001121111100 0111111
Q ss_pred hcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChh----hHH-HHHhhcc-
Q 021362 179 RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWK-DVSSMFD- 252 (313)
Q Consensus 179 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~----~~~-~l~~l~~- 252 (313)
.......++.+++| +..+.+.+.+++++++|+++..+|.. +.. .++.+.+
T Consensus 85 -----------------------i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~ 140 (202)
T cd03243 85 -----------------------ISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEK 140 (202)
T ss_pred -----------------------ccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 11122344555554 44445666789999999999999982 222 2333332
Q ss_pred --ceEEEEcChHHHHH
Q 021362 253 --EKWFIEVDLDTAMQ 266 (313)
Q Consensus 253 --~~i~vtHd~~~~~~ 266 (313)
..+++||+.+.+..
T Consensus 141 ~~~vi~~tH~~~~~~~ 156 (202)
T cd03243 141 GCRTLFATHFHELADL 156 (202)
T ss_pred CCeEEEECChHHHHHH
Confidence 25799999888765
No 431
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.28 E-value=1.5e-12 Score=115.94 Aligned_cols=127 Identities=13% Similarity=0.129 Sum_probs=81.9
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHH
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~ 175 (313)
+.+|+++++.++++++|.||||+|||||+++|+-..- ..+...++|.+... +..
T Consensus 19 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~---------------la~~g~~vpa~~~~-----~~~------ 72 (222)
T cd03285 19 IPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVL---------------MAQIGCFVPCDSAD-----IPI------ 72 (222)
T ss_pred EEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHH---------------HHHhCCCcCcccEE-----Eec------
Confidence 7899999999999999999999999999999984321 00001133333110 010
Q ss_pred HHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhh--ccCceEEEEcCC---ccccChh--hHHHHH
Q 021362 176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGN---YLFLDGG--VWKDVS 248 (313)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al--~~~ar~Li~d~~---~lllDE~--~~~~l~ 248 (313)
+.+++..++... .....+|.||++++.++.++ +.++.++++|++ +..+|.. .+..++
T Consensus 73 ---------------~~~il~~~~l~d-~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~ 136 (222)
T cd03285 73 ---------------VDCILARVGASD-SQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAE 136 (222)
T ss_pred ---------------cceeEeeecccc-chhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHH
Confidence 112223333221 12458999999999998888 788899999999 7778872 222223
Q ss_pred hhc----cceEEEEcChHHH
Q 021362 249 SMF----DEKWFIEVDLDTA 264 (313)
Q Consensus 249 ~l~----~~~i~vtHd~~~~ 264 (313)
.+. ...+++||+.+..
T Consensus 137 ~l~~~~~~~vlisTH~~el~ 156 (222)
T cd03285 137 YIATQIKCFCLFATHFHELT 156 (222)
T ss_pred HHHhcCCCeEEEEechHHHH
Confidence 332 1246999974443
No 432
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.22 E-value=1e-10 Score=101.23 Aligned_cols=138 Identities=25% Similarity=0.344 Sum_probs=96.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~ 188 (313)
+++|.|++|||||||.+.|+..+. .+.++.+|+++.....+...++ ....++.|.+.+.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~------------------~~~~i~~Ddf~~~~~~~~~~~~---~~~~~d~p~a~D~ 59 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP------------------NCCVIHQDDFFKPEDEIPVDEN---GFKQWDVLEALDM 59 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC------------------CCeEEccccccCCcccCChHhh---cCCCCCCcccccH
Confidence 589999999999999999999873 1456889988776533322211 2234566778888
Q ss_pred HHHHHHHHHhhcCCCccCCCCCCcCCCcch-------------hhhhhccCceEEEEcCCccccChhhHHHHHhhccceE
Q 021362 189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVE-------------DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 255 (313)
Q Consensus 189 ~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~-------------ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i 255 (313)
+.+.+.|..+........+.++.+...... -+......+++++.|+.+++.|+ .+.++++..|
T Consensus 60 ~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~----~l~~l~D~~I 135 (187)
T cd02024 60 EAMMSTLDYWRETGHFPKFLRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYK----PLVDLFDIRY 135 (187)
T ss_pred HHHHHHHHHHHcCCCccCcccCccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCH----HHHhhcCcee
Confidence 999999988875543333344443321110 11123455889999999988875 5778999999
Q ss_pred EEEcChHHHHHHHhhc
Q 021362 256 FIEVDLDTAMQRVLKR 271 (313)
Q Consensus 256 ~vtHd~~~~~~rv~gr 271 (313)
|++-|.+++.+|.+.|
T Consensus 136 fvd~~~d~~~~Rr~~R 151 (187)
T cd02024 136 FLRVPYETCKRRREAR 151 (187)
T ss_pred EecCCHHHHHHHHHHc
Confidence 9999999999977744
No 433
>PRK06696 uridine kinase; Validated
Probab=99.20 E-value=1.2e-10 Score=103.63 Aligned_cols=184 Identities=24% Similarity=0.337 Sum_probs=108.0
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCC-C
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-P 183 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~-~ 183 (313)
...-+|||.|++|||||||.+.|+..++ ..| ..+..+++|+|+.... ......+ ....+. .
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~----~~g----------~~v~~~~~Ddf~~~~~---~r~~~~~-~~~~g~~~ 81 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIK----KRG----------RPVIRASIDDFHNPRV---IRYRRGR-ESAEGYYE 81 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH----HcC----------CeEEEeccccccCCHH---HHHHcCC-CChhhcCc
Confidence 3456999999999999999999999985 222 1244567887765421 1000000 000010 1
Q ss_pred CCccHHHHHHHHHH-hhcCCC--ccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcC
Q 021362 184 WTFNPLLLLNCLKN-LRNQGS--VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVD 260 (313)
Q Consensus 184 ~~~~~~~~~~~l~~-l~~~~~--~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd 260 (313)
...+.+.+.+.+-. +..... ...+.++.-...+..-.........++++|+.+++- ..+..+++..|+++-+
T Consensus 82 ~~~d~~~L~~~l~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~-----~~~~~~~d~~i~v~~~ 156 (223)
T PRK06696 82 DAYDYTALRRLLLDPLGPNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLR-----PELRDLWDYKIFLDTD 156 (223)
T ss_pred cccCHHHHHHHHHhhccCCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhh-----hhHHhhCCEEEEEECC
Confidence 23455555443332 321111 111122322222221111222346789999988643 3566778889999999
Q ss_pred hHHHHHHHhhccc-ccCCchHHHHHHHHhcCCchhH-Hhhhc--ccCccEEeecCC
Q 021362 261 LDTAMQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKS--KKNADLVIKSID 312 (313)
Q Consensus 261 ~~~~~~rv~griv-~~G~~~ev~~~~~~~~~~~~~~-~i~~~--~~~ad~ii~~~~ 312 (313)
.+....|+..|.. ..|..++.... |...+.++++ |+.+. +..||+||++.+
T Consensus 157 ~e~~~~R~~~Rd~~~~g~~~~~~~~-~~~r~~~~~~~y~~~~~p~~~ADivi~n~~ 211 (223)
T PRK06696 157 FEVSRRRGAKRDTEAFGSYEEAEKM-YLARYHPAQKLYIAEANPKERADVVIDNSD 211 (223)
T ss_pred HHHHHHHHHHhhhhhhCCchHHHHH-HHHHHhHHHHHHHhhcChHhhCeEEEECCC
Confidence 9999988886544 45765555444 5567888888 55444 788999999875
No 434
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.19 E-value=2.9e-11 Score=111.03 Aligned_cols=59 Identities=15% Similarity=-0.024 Sum_probs=45.7
Q ss_pred CCCCcCCCcchhhhhhcc----CceEEEEcCCccccChh----hHHHHHhhcc--ceEEEEcChHHHHH
Q 021362 208 SFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ 266 (313)
Q Consensus 208 ~LSgG~kqRv~ia~al~~----~ar~Li~d~~~lllDE~----~~~~l~~l~~--~~i~vtHd~~~~~~ 266 (313)
.|||||+||+++|++++. +++++++|+|...||.. +.+.+.++.. ..+++||+++....
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~ 238 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAM 238 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHh
Confidence 599999999999986543 89999999999999993 4445554433 24799999986543
No 435
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.14 E-value=2.7e-10 Score=100.77 Aligned_cols=129 Identities=9% Similarity=0.010 Sum_probs=78.7
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHH--HhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccCh
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR--RINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDP 173 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~g--l~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~ 173 (313)
+-+|++++=..+.++.|.||||+|||||+|.|+. ++ +..|...... .-.++|+.|....+.. ..++.+++
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l----a~~G~~v~a~---~~~~~~~d~i~~~l~~-~~si~~~~ 89 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL----AHIGSFVPAD---SATIGLVDKIFTRMSS-RESVSSGQ 89 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH----HhCCCeeEcC---CcEEeeeeeeeeeeCC-ccChhhcc
Confidence 4456665433337999999999999999999994 44 5566655432 1235655554221111 11222211
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChh-----hHHHHH
Q 021362 174 KEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG-----VWKDVS 248 (313)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~-----~~~~l~ 248 (313)
. .+.. +-||++++++++..+.++++|++.-.+|.. .+..++
T Consensus 90 S---------------~f~~-------------------el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~ 135 (213)
T cd03281 90 S---------------AFMI-------------------DLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIE 135 (213)
T ss_pred c---------------hHHH-------------------HHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHH
Confidence 0 0111 124556677777778999999999999861 234555
Q ss_pred hhcc------ceEEEEcChHHHHH
Q 021362 249 SMFD------EKWFIEVDLDTAMQ 266 (313)
Q Consensus 249 ~l~~------~~i~vtHd~~~~~~ 266 (313)
.+.+ ..+++||+.+.+..
T Consensus 136 ~l~~~~~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 136 HLLKRGPECPRVIVSTHFHELFNR 159 (213)
T ss_pred HHHhcCCCCcEEEEEcChHHHHHh
Confidence 5543 24799999999875
No 436
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.06 E-value=9.1e-11 Score=107.20 Aligned_cols=38 Identities=21% Similarity=0.178 Sum_probs=35.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP 148 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~ 148 (313)
.-++|+||||||||||+++|+|+++ |++|++.++|++.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~~v 149 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGKKV 149 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCEEe
Confidence 5789999999999999999999999 9999999998653
No 437
>PLN02796 D-glycerate 3-kinase
Probab=99.05 E-value=1.5e-09 Score=101.62 Aligned_cols=187 Identities=21% Similarity=0.216 Sum_probs=111.4
Q ss_pred ccccccccc---CCCcE-----EEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccC
Q 021362 96 PTSALASNV---NVKHI-----VGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL 167 (313)
Q Consensus 96 ~L~~vsl~i---~~Gei-----v~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~l 167 (313)
+++++++.+ ++|+. +||+|++|||||||++.|.+++. +. | ..++.+..|++++.....
T Consensus 81 il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~---~~-g----------~~~g~IsiDdfYLt~~e~ 146 (347)
T PLN02796 81 CEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFN---AT-G----------RRAASLSIDDFYLTAADQ 146 (347)
T ss_pred HHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhc---cc-C----------CceeEEEECCcccchhhH
Confidence 788888887 55665 99999999999999999999996 43 1 124567777665432111
Q ss_pred C-c-ccChHH-HHHhcCCCCCccHHHHHHHHHHhh----cCCCccCCCCC----CcCCCcchhh--hhhccCceEEEEcC
Q 021362 168 D-A-MEDPKE-AHARRGAPWTFNPLLLLNCLKNLR----NQGSVYAPSFD----HGVGDPVEDD--ILVGLQHKVVIVDG 234 (313)
Q Consensus 168 t-v-~e~~~~-~~~~~~~~~~~~~~~~~~~l~~l~----~~~~~~~~~LS----gG~kqRv~ia--~al~~~ar~Li~d~ 234 (313)
. . .++..- ....+|.+.+++.....+.++.+. .+....+|.|+ +|+..|..-. ..+..+++++|+|+
T Consensus 147 ~~L~~q~P~n~Ll~~RG~PgThDl~Ll~e~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EG 226 (347)
T PLN02796 147 AKLAEANPGNALLELRGNAGSHDLALGVETLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEG 226 (347)
T ss_pred HHHHhhCcchhhhhcCCCCchhHHHHHHHHHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcC
Confidence 1 0 111111 123456777788888888888876 33445677555 4445565321 22335689999999
Q ss_pred CccccCh--------------hhHHHHHhh-------ccceE-EEEcChHHHHHHHh---hcccc---cCCchHHHHHHH
Q 021362 235 NYLFLDG--------------GVWKDVSSM-------FDEKW-FIEVDLDTAMQRVL---KRHIS---TGKPPDVAKWRI 286 (313)
Q Consensus 235 ~~lllDE--------------~~~~~l~~l-------~~~~i-~vtHd~~~~~~rv~---griv~---~G~~~ev~~~~~ 286 (313)
-++++-+ .+-+.|... .+.-| +-.-|.+.+.++.. .+..+ .|-.++-+.. +
T Consensus 227 w~vG~~p~~~~~l~~~~~~l~~vN~~L~~y~~~w~~~~d~~i~L~a~~~~~v~~WR~qQE~~l~~~~~~gMsde~v~~-F 305 (347)
T PLN02796 227 WMLGFKPLGPDAVKAVDPQLEVVNKNLEAYYDAWDKLVDSWIVIKVDDPSWVYEWRLQAEIAMRAKGKPGMSDEEVAD-F 305 (347)
T ss_pred cccCCCCCChHHhhccChhHHHHHHHHHHHHHHHHHhhceEEEEeCCCchHHHHHHHHHHHHHHHhCCCCCCHHHHHH-H
Confidence 9999843 122222222 22223 44467888877333 22222 2334444444 5
Q ss_pred HhcCCchhHHh
Q 021362 287 EYNDRPNAELI 297 (313)
Q Consensus 287 ~~~~~~~~~~i 297 (313)
-.+++|..+.+
T Consensus 306 V~~~mP~y~~y 316 (347)
T PLN02796 306 VSRYMPAYKAY 316 (347)
T ss_pred HHHHHHHHHHH
Confidence 55778887743
No 438
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.05 E-value=8.5e-11 Score=113.59 Aligned_cols=49 Identities=16% Similarity=0.191 Sum_probs=44.7
Q ss_pred ccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCc-eeecCCCCC
Q 021362 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQVKP 148 (313)
Q Consensus 95 ~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G-~i~~~g~~~ 148 (313)
.+|++|||++++||+++|+||||||||||++ +|+.. |++| +|.++|++.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~---~~sGg~I~ldg~~~ 69 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK---FSEGYEFFLDATHS 69 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC---CCCCCEEEECCEEC
Confidence 3899999999999999999999999999999 77887 8888 799999763
No 439
>PRK07667 uridine kinase; Provisional
Probab=99.05 E-value=4.9e-09 Score=91.28 Aligned_cols=167 Identities=17% Similarity=0.248 Sum_probs=102.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC-
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW- 184 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~- 184 (313)
..-+|||-|++|||||||.+.|...++ .. ...+.++..|+++..... ....+.+.
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~----~~----------~~~~~~i~~Dd~~~~~~~----------~~~~~~~~~ 71 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMK----QE----------GIPFHIFHIDDYIVERNK----------RYHTGFEEW 71 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH----hC----------CCcEEEEEcCcccchhhh----------HHhcCCCch
Confidence 346999999999999999999999885 11 123556788876432210 00111110
Q ss_pred ------CccHHHHH-HHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEE
Q 021362 185 ------TFNPLLLL-NCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFI 257 (313)
Q Consensus 185 ------~~~~~~~~-~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~v 257 (313)
..+.+.+. .++..+........|.++.-.+.+..-. .....+.++++|+++++ . ..+.++++..|+|
T Consensus 72 ~~~~~~~~d~~~L~~~v~~~L~~~~~i~~P~~d~~~~~~~~~~-~~~~~~~vvIvEG~~l~-~----~~~~~~~d~~v~V 145 (193)
T PRK07667 72 YEYYYLQWDIEWLRQKFFRKLQNETKLTLPFYHDETDTCEMKK-VQIPIVGVIVIEGVFLQ-R----KEWRDFFHYMVYL 145 (193)
T ss_pred hhhhhhhhhHHHHHHHHHHhhcCCCeEEEeeeccccccccccc-eecCCCCEEEEEehhhh-h----hhHHhhceEEEEE
Confidence 12333333 3455565554555666665544433211 11245789999999853 2 3567788999999
Q ss_pred EcChHHHHHHHhhcccccCCchHHHHHHHHhcCCchhH-Hhhh--cccCccEEee
Q 021362 258 EVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAE-LIMK--SKKNADLVIK 309 (313)
Q Consensus 258 tHd~~~~~~rv~griv~~G~~~ev~~~~~~~~~~~~~~-~i~~--~~~~ad~ii~ 309 (313)
+-+.+...+|++.|. | .....+..++.+..+ |+.. .+..||+|++
T Consensus 146 ~~~~~~~~~R~~~r~---~----~~~~~~~~r~~~a~~~y~~~~~~~~~ad~i~~ 193 (193)
T PRK07667 146 DCPRETRFLRESEET---Q----KNLSKFKNRYWKAEDYYLETESPKDRADLVIK 193 (193)
T ss_pred ECCHHHHHHHHhccc---H----hHHHHHHHHhHHHHHHHHhhcChHhhCcEEeC
Confidence 999999888776422 2 222345556777777 5443 3888999974
No 440
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.03 E-value=6.7e-10 Score=98.48 Aligned_cols=35 Identities=26% Similarity=0.245 Sum_probs=32.4
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+.+|++|++.+ ++++|.||||+|||||+|+|+++.
T Consensus 20 v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 20 VPNDTELDPER-QILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred EeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHH
Confidence 78999999887 999999999999999999998765
No 441
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.03 E-value=8.8e-10 Score=100.95 Aligned_cols=59 Identities=14% Similarity=0.091 Sum_probs=45.8
Q ss_pred CCCCCcCCCcchhhhhhc---------cCceEEEEcCCccccChhhHHHHHhhcc---ceEEEEcChHHHH
Q 021362 207 PSFDHGVGDPVEDDILVG---------LQHKVVIVDGNYLFLDGGVWKDVSSMFD---EKWFIEVDLDTAM 265 (313)
Q Consensus 207 ~~LSgG~kqRv~ia~al~---------~~ar~Li~d~~~lllDE~~~~~l~~l~~---~~i~vtHd~~~~~ 265 (313)
..+|+||+|+++++++++ ..+.++++|++...||+...+.+.+... ..++++|+.+.+.
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~q~ii~~~~~~~~~ 252 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRVQTFVTTTDLADFD 252 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCCCEEEEeCCchhcc
Confidence 368999999999999875 6889999999999999955444444432 4678888776654
No 442
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.02 E-value=2.3e-09 Score=95.39 Aligned_cols=46 Identities=20% Similarity=0.138 Sum_probs=40.9
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHH-HhcccCCCCceeecC
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR-RINKIWPQKASSFDS 144 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~g-l~~~~~p~~G~i~~~ 144 (313)
+.+|++|++.+|++++|.||||+||||++++|++ .+. ++.|...+.
T Consensus 20 v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~l---a~~G~~v~a 66 (222)
T cd03287 20 VPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIM---AQIGSFVPA 66 (222)
T ss_pred EEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHH---HhCCCEEEc
Confidence 7899999999999999999999999999999999 555 788876544
No 443
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.99 E-value=7.4e-10 Score=108.34 Aligned_cols=103 Identities=20% Similarity=0.254 Sum_probs=70.8
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHH
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~ 175 (313)
++++.++.+.+|.+++|+||||+||||++..|++.+. ...|. ..++++.+|.+ ..+++|++.+
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~---~~~G~---------~kV~LI~~Dt~-----RigA~EQLr~ 307 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV---MRHGA---------SKVALLTTDSY-----RIGGHEQLRI 307 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH---HhcCC---------CeEEEEeCCcc-----chhHHHHHHH
Confidence 5667777888999999999999999999999999886 55442 24788999864 2688999999
Q ss_pred HHHhcCCCCCcc--HHHHHHHHHHhhcCCCccCCCCCCcCCCcc
Q 021362 176 AHARRGAPWTFN--PLLLLNCLKNLRNQGSVYAPSFDHGVGDPV 217 (313)
Q Consensus 176 ~~~~~~~~~~~~--~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv 217 (313)
+...++.+.... .......+..+.......+.+ .|+.|+.
T Consensus 308 ~AeilGVpv~~~~~~~Dl~~aL~~L~d~d~VLIDT--aGr~~~d 349 (484)
T PRK06995 308 YGKILGVPVHAVKDAADLRLALSELRNKHIVLIDT--IGMSQRD 349 (484)
T ss_pred HHHHhCCCeeccCCchhHHHHHHhccCCCeEEeCC--CCcChhh
Confidence 888877664322 222222333333444455556 4544443
No 444
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.97 E-value=3.2e-10 Score=117.27 Aligned_cols=127 Identities=9% Similarity=0.065 Sum_probs=78.8
Q ss_pred cccccCCC-cEEEEECCCCCcHHHHHHHHHHH-hcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHH
Q 021362 100 LASNVNVK-HIVGLAGPPGAGKSTLAAEVVRR-INKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (313)
Q Consensus 100 vsl~i~~G-eiv~l~GpNGsGKSTLlk~l~gl-~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~ 177 (313)
+|+++..+ ++++|.||||+|||||+|+|+|. +. +..| .++|...... +..++++.
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~---aq~G-------------~~Vpa~~~~~----~~~~d~i~--- 370 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALM---FQSG-------------IPIPANEHSE----IPYFEEIF--- 370 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHH---HHhC-------------CCccCCcccc----ccchhhee---
Confidence 67888877 89999999999999999999998 33 4443 1233321100 11111110
Q ss_pred HhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hh-HHHHHhhcc
Q 021362 178 ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GV-WKDVSSMFD 252 (313)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~-~~~l~~l~~ 252 (313)
.... +.+.+ .....+||+||++++.+...+ ..+.++++|++...+|+ .+ +..+..+.+
T Consensus 371 --~~i~---~~~si-----------~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~ 433 (771)
T TIGR01069 371 --ADIG---DEQSI-----------EQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLK 433 (771)
T ss_pred --eecC---hHhHH-----------hhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 0000 01111 123557899999988886654 56788899999999988 22 233344332
Q ss_pred ---ceEEEEcChHHHHH
Q 021362 253 ---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 253 ---~~i~vtHd~~~~~~ 266 (313)
..+++||+.++...
T Consensus 434 ~g~~viitTH~~eL~~~ 450 (771)
T TIGR01069 434 QNAQVLITTHYKELKAL 450 (771)
T ss_pred cCCEEEEECChHHHHHH
Confidence 24799999987543
No 445
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.94 E-value=1.9e-10 Score=99.47 Aligned_cols=61 Identities=7% Similarity=-0.081 Sum_probs=39.5
Q ss_pred ccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChh----h-HHHHHhhcc----ceEEEEcChHHHH
Q 021362 204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----V-WKDVSSMFD----EKWFIEVDLDTAM 265 (313)
Q Consensus 204 ~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~----~-~~~l~~l~~----~~i~vtHd~~~~~ 265 (313)
....+||+|++|...+.. .+.+++++++|++...+|+. + +..++.+.+ ..+++||+.+...
T Consensus 57 ~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~ 126 (185)
T smart00534 57 QGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTK 126 (185)
T ss_pred ccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHH
Confidence 345578888876444322 23478999999999999982 2 233344432 2479999997544
No 446
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.90 E-value=5.2e-09 Score=94.63 Aligned_cols=57 Identities=9% Similarity=0.079 Sum_probs=43.2
Q ss_pred CCCCcC--------CCcchhhhhhccCceEEEEcCCccccC---h---hhHHHHHhhccceEEEEcChHHHHH
Q 021362 208 SFDHGV--------GDPVEDDILVGLQHKVVIVDGNYLFLD---G---GVWKDVSSMFDEKWFIEVDLDTAMQ 266 (313)
Q Consensus 208 ~LSgG~--------kqRv~ia~al~~~ar~Li~d~~~lllD---E---~~~~~l~~l~~~~i~vtHd~~~~~~ 266 (313)
.+|||+ +||+++|+++..++.+.++ .+.++| | -+.+.++...+..|+++|++.....
T Consensus 129 ~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~la~~~~ 199 (249)
T cd01128 129 ILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAERRI 199 (249)
T ss_pred CCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchHHHHHhcCCCcEEEEchHHhhCCC
Confidence 469999 9999999998788999888 777777 2 2234444444556899999888765
No 447
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.90 E-value=2.5e-09 Score=92.54 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=41.6
Q ss_pred ccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCC
Q 021362 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 97 L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~ 146 (313)
.+=+.+.+++|+.++|+||||||||||+++|+|+++ |+.|.+.+.+.
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~---~~~~~i~ied~ 61 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP---PDERIITIEDT 61 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC---CCCCEEEECCc
Confidence 444567899999999999999999999999999998 99999888763
No 448
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.86 E-value=1.5e-09 Score=96.02 Aligned_cols=59 Identities=12% Similarity=0.036 Sum_probs=40.6
Q ss_pred CCCCcCCCcchhhhhhc----cCceEEEEcCCccccCh----hhHHHHHhhc--cceEEEEcChHHHHH
Q 021362 208 SFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDG----GVWKDVSSMF--DEKWFIEVDLDTAMQ 266 (313)
Q Consensus 208 ~LSgG~kqRv~ia~al~----~~ar~Li~d~~~lllDE----~~~~~l~~l~--~~~i~vtHd~~~~~~ 266 (313)
.||||||.+++||..++ .+..++++|+...-||+ .+.+.|.++. .+.|++||+......
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~ 204 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFED 204 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999976654 45667778888888887 5666777776 356899999887654
No 449
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.85 E-value=1.3e-08 Score=95.02 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=35.9
Q ss_pred cccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeec
Q 021362 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143 (313)
Q Consensus 100 vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~ 143 (313)
+++.+..|+.++|+||+|||||||+++|+++++ ++.|.+.+
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~---~~~~iv~i 177 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP---KDERIITI 177 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC---ccccEEEE
Confidence 678899999999999999999999999999997 66665544
No 450
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.85 E-value=1.2e-09 Score=103.18 Aligned_cols=158 Identities=16% Similarity=0.090 Sum_probs=95.2
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE----ecCCCCCC-cccC---CcccChHH-
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL----PMDGFHLY-LSQL---DAMEDPKE- 175 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v----~qd~~~~~-~~~l---tv~e~~~~- 175 (313)
.+|++.|++|-||-||||-+++++|-++ |.-|.... +.+....++|. -|..+.-. ...+ .-.+.+..
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~k---pnlg~~~~-pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~i 173 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQK---PNLGRYDN-PPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQI 173 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCC---CCCCCCCC-CcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHH
Confidence 5899999999999999999999999998 87765321 00000111110 01100000 0000 00111111
Q ss_pred HHHhcC-----CCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hhH
Q 021362 176 AHARRG-----APWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVW 244 (313)
Q Consensus 176 ~~~~~~-----~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~ 244 (313)
+....+ .....+.+...++++.+. ...++.+.+||||+.||.+||++.+..|++.++|++=--||- ...
T Consensus 174 pr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA 253 (592)
T KOG0063|consen 174 PRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAA 253 (592)
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHH
Confidence 111111 001111122333444333 456778889999999999999999999999999999999987 344
Q ss_pred HHHHhhcc---ceEEEEcChHHHHH
Q 021362 245 KDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 245 ~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
..|+.+.. .+|+|.||++....
T Consensus 254 ~~IRsl~~p~~YiIVVEHDLsVLDy 278 (592)
T KOG0063|consen 254 ITIRSLINPDRYIIVVEHDLSVLDY 278 (592)
T ss_pred HHHHHhhCCCCeEEEEEeechHHHh
Confidence 45555543 36899999998876
No 451
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=98.84 E-value=4.5e-08 Score=93.53 Aligned_cols=179 Identities=18% Similarity=0.197 Sum_probs=102.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCC-cc-cChHH-HHHhcCC
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD-AM-EDPKE-AHARRGA 182 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~lt-v~-e~~~~-~~~~~~~ 182 (313)
+.-++||.|++|||||||++.|.++++ +. | ..++.+.+|++++...... .. +|..- .+..+|.
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~---~~-g----------~~vgvISiDDfYLt~eer~kL~~~nP~n~LL~~RG~ 276 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFR---VT-G----------RKSATLSIDDFYLTAEGQAELRERNPGNALLELRGN 276 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc---cc-C----------CceEEEEECCccCChHHHHHHHhhCccchhhcccCC
Confidence 347999999999999999999999996 43 1 2356688887764321110 00 01000 1123455
Q ss_pred CCCccHHHHHHHHHHhh----cCCCccCCCCC----CcCCCcchhh--hhhccCceEEEEcCCccccCh-----------
Q 021362 183 PWTFNPLLLLNCLKNLR----NQGSVYAPSFD----HGVGDPVEDD--ILVGLQHKVVIVDGNYLFLDG----------- 241 (313)
Q Consensus 183 ~~~~~~~~~~~~l~~l~----~~~~~~~~~LS----gG~kqRv~ia--~al~~~ar~Li~d~~~lllDE----------- 241 (313)
|...+.....+.++.+. .+....+|.|+ .|+..|+.-. ..+..+++++|+|+-++++-+
T Consensus 277 PGTHDv~Lg~e~L~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~~~~~l~~~D~ 356 (460)
T PLN03046 277 AGSHDLQFSVETLEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPLPNEVVKAVDP 356 (460)
T ss_pred CccccHhhHHHHHHHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCCChHHhhccCh
Confidence 66777766666666663 34445666554 3455675432 223456899999999888843
Q ss_pred ---hhHHHHHhh-------ccceE-EEEcChHHHHHHHh---hcccc---cCCchHHHHHHHHhcCCchhHHhhh
Q 021362 242 ---GVWKDVSSM-------FDEKW-FIEVDLDTAMQRVL---KRHIS---TGKPPDVAKWRIEYNDRPNAELIMK 299 (313)
Q Consensus 242 ---~~~~~l~~l-------~~~~i-~vtHd~~~~~~rv~---griv~---~G~~~ev~~~~~~~~~~~~~~~i~~ 299 (313)
.+-+.|... .+.-+ +-.-|.+.+.++.. .+... .|-.++-+.+ +-..++|..+.+.+
T Consensus 357 ~l~~VN~~L~~Y~~~w~~~~D~li~L~a~d~~~Vy~WRlqQE~kLr~~gg~GMsdeqV~~-FV~~YmPaY~~y~~ 430 (460)
T PLN03046 357 QLEVVNKNLEAYYDAWDKFIDAWVVIKIQDPSCVYQWRLQAEIAMRADGKPGMSDEEVMD-FVSRYLPAYKAYLP 430 (460)
T ss_pred hHHHHHHHHHHHHHHHHHhhceeEEeeCCChhHHHHHHHHHHHHHHHcCCCCCCHHHHHH-HHHHhhhHHHHHHH
Confidence 111222222 11212 34577788877333 22222 2444444444 66688898884333
No 452
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.84 E-value=6.5e-09 Score=100.63 Aligned_cols=79 Identities=14% Similarity=0.077 Sum_probs=65.2
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCC---CC----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ---VK---- 147 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g---~~---- 147 (313)
.+.++.+++++.|... +.+++.++ .|.+|++++|+||||||||||+++|+++.+ |+.|.|.+.| .+
T Consensus 137 p~~~~r~~v~~~l~TG---i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~ 209 (450)
T PRK06002 137 PPAMTRARVETGLRTG---VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREF 209 (450)
T ss_pred CCCeEeecceEEcCCC---cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHH
Confidence 3478999999999643 23888885 999999999999999999999999999998 9999887754 22
Q ss_pred --------CCCeEEEEecCCC
Q 021362 148 --------PPDVATVLPMDGF 160 (313)
Q Consensus 148 --------~~~~i~~v~qd~~ 160 (313)
+.+.+++++|.+.
T Consensus 210 ~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 210 LEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred hHHHHHHhhCCeEEEEEcCCC
Confidence 2346899999854
No 453
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.82 E-value=2.1e-09 Score=112.93 Aligned_cols=90 Identities=17% Similarity=0.193 Sum_probs=72.1
Q ss_pred HHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCc--eEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcCh
Q 021362 194 CLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDL 261 (313)
Q Consensus 194 ~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~a--r~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~ 261 (313)
.|+.++.. .++.+.+|||||+|||+||++++..+ .++++|+|+..||+ .+++.|+++.+. +|+|+||+
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~ 551 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDE 551 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 45555543 46788899999999999999999886 89999999999999 556666666543 47999999
Q ss_pred HHHHH--HHh----------hcccccCCchHHHH
Q 021362 262 DTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 262 ~~~~~--rv~----------griv~~G~~~ev~~ 283 (313)
+++.. |++ |++++.|+++++..
T Consensus 552 ~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 552 DTIRAADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred HHHHhCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 99865 544 58889999888754
No 454
>PRK08233 hypothetical protein; Provisional
Probab=98.78 E-value=1.5e-07 Score=80.29 Aligned_cols=80 Identities=25% Similarity=0.366 Sum_probs=49.1
Q ss_pred eEEEEcCCccccChhhHHHHHhhccceEEEEcChHHHHHHHhhcccccCCchHHH--HHHHHhcCCchhH-HhhhcccCc
Q 021362 228 KVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVA--KWRIEYNDRPNAE-LIMKSKKNA 304 (313)
Q Consensus 228 r~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~~~~rv~griv~~G~~~ev~--~~~~~~~~~~~~~-~i~~~~~~a 304 (313)
.+++.|.++..+. +.+.+..+..|+++.+.+....|++.|.......+++. .+.|....+|.+. ++.+.+..|
T Consensus 79 ~~vivd~~~~~~~----~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 154 (182)
T PRK08233 79 DYIIVDYPFAYLN----SEMRQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEALHTVKPNA 154 (182)
T ss_pred eEEEEeeehhhcc----HHHHHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcCccCC
Confidence 5677887766554 34666778889999999998887775543322222232 1223333444443 455556678
Q ss_pred cEEeecC
Q 021362 305 DLVIKSI 311 (313)
Q Consensus 305 d~ii~~~ 311 (313)
+++|++.
T Consensus 155 ~~vId~~ 161 (182)
T PRK08233 155 DIVLDGA 161 (182)
T ss_pred eEEEcCC
Confidence 9988753
No 455
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.73 E-value=3.7e-08 Score=87.42 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=34.4
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+-+|++|++++|++++|.||||+||||+++++++..
T Consensus 19 v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~ 54 (218)
T cd03286 19 VPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAV 54 (218)
T ss_pred EEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHH
Confidence 789999999999999999999999999999999875
No 456
>PRK06547 hypothetical protein; Provisional
Probab=98.72 E-value=1.7e-07 Score=80.22 Aligned_cols=151 Identities=13% Similarity=0.050 Sum_probs=85.5
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~ 184 (313)
..-.+++|.|++|||||||.+.|+..+. +.++.+|.++... +.+ +
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~-------------------~~~~~~d~~~~~~------~~~---------~- 57 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTG-------------------FQLVHLDDLYPGW------HGL---------A- 57 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC-------------------CCeecccceeccc------ccC---------C-
Confidence 4456899999999999999999998763 2346666543211 110 0
Q ss_pred CccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhcc-----ceEEEEc
Q 021362 185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-----EKWFIEV 259 (313)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~-----~~i~vtH 259 (313)
...+.+.+.+..-+ .....+ ++.-...+... .......+++.++-..+.+ .++++.+ ..|+++-
T Consensus 58 -~~~~~l~~~~l~~g--~~~~~~-yd~~~~~~~~~--~~l~~~~vVIvEG~~al~~-----~~r~~~d~~g~v~~I~ld~ 126 (172)
T PRK06547 58 -AASEHVAEAVLDEG--RPGRWR-WDWANNRPGDW--VSVEPGRRLIIEGVGSLTA-----ANVALASLLGEVLTVWLDG 126 (172)
T ss_pred -hHHHHHHHHHHhCC--CCceec-CCCCCCCCCCc--EEeCCCCeEEEEehhhccH-----HHHHHhccCCCEEEEEEEC
Confidence 01122222222211 111111 22111111111 1223356888888777654 3455555 5689999
Q ss_pred ChHHHHHHHhhcccccCCchHHHHHHHHhcCCchhH-Hhhh--cccCccEEee
Q 021362 260 DLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAE-LIMK--SKKNADLVIK 309 (313)
Q Consensus 260 d~~~~~~rv~griv~~G~~~ev~~~~~~~~~~~~~~-~i~~--~~~~ad~ii~ 309 (313)
+.+....|++.|. |. . ..+...+.+.++ |+.. .+..||+++.
T Consensus 127 ~~~vr~~R~~~Rd---~~----~-~~~~~~w~~~e~~~~~~~~~~~~ad~~~~ 171 (172)
T PRK06547 127 PEALRKERALARD---PD----Y-APHWEMWAAQEERHFARYDPRDVADWLGS 171 (172)
T ss_pred CHHHHHHHHHhcC---ch----h-hHHHHHHHHHHHHHHhcCCChhccEEEec
Confidence 9999999888775 22 2 223356778888 4433 3899999874
No 457
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.72 E-value=3.2e-08 Score=96.24 Aligned_cols=47 Identities=23% Similarity=0.213 Sum_probs=44.0
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCC
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~ 146 (313)
+++++ |.+.+|++++|+|+||+|||||+++|+|+.+ |+.|.|.+.|+
T Consensus 148 vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~---~~~gvI~~~Ge 194 (438)
T PRK07721 148 AIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS---ADLNVIALIGE 194 (438)
T ss_pred hhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC---CCeEEEEEEec
Confidence 89999 9999999999999999999999999999998 99999887554
No 458
>PRK00064 recF recombination protein F; Reviewed
Probab=98.70 E-value=3.9e-08 Score=93.74 Aligned_cols=59 Identities=12% Similarity=0.091 Sum_probs=46.2
Q ss_pred CCCCCcCCCcchhhhhhc---------cCceEEEEcCCccccChhhHHHHHhhc----cceEEEEcChHHHH
Q 021362 207 PSFDHGVGDPVEDDILVG---------LQHKVVIVDGNYLFLDGGVWKDVSSMF----DEKWFIEVDLDTAM 265 (313)
Q Consensus 207 ~~LSgG~kqRv~ia~al~---------~~ar~Li~d~~~lllDE~~~~~l~~l~----~~~i~vtHd~~~~~ 265 (313)
..+|.||++++.+|+.++ ..+.++++|+++.-||+.-.+.+.++. ...++++|+.+...
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~~~qv~it~~~~~~~~ 343 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGLGAQVFITTTDLEDLA 343 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhccCCEEEEEcCChhhhh
Confidence 489999999999999885 689999999999999995444444433 34578889887653
No 459
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.68 E-value=1.5e-08 Score=106.31 Aligned_cols=82 Identities=16% Similarity=0.181 Sum_probs=67.0
Q ss_pred CCccCCCCCCcCCCcchhhhhhccCc--eEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH--HHh-
Q 021362 202 GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ--RVL- 269 (313)
Q Consensus 202 ~~~~~~~LSgG~kqRv~ia~al~~~a--r~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~--rv~- 269 (313)
.++.+.+|||||+||+.||++++.++ .++++|+|+..||+ .+++.|+++.+. +|+|+||++++.. |++
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~ 560 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVID 560 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEE
Confidence 46778899999999999999999875 89999999999999 556666666543 4799999998865 443
Q ss_pred ---------hcccccCCchHHHH
Q 021362 270 ---------KRHISTGKPPDVAK 283 (313)
Q Consensus 270 ---------griv~~G~~~ev~~ 283 (313)
|++++.|+++++..
T Consensus 561 LgpgaG~~~G~Iv~~g~~~el~~ 583 (924)
T TIGR00630 561 IGPGAGIHGGEVVASGTPEEILA 583 (924)
T ss_pred ecccccCCCCEEeeccCHHHHhc
Confidence 67888999888753
No 460
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.67 E-value=5.9e-09 Score=108.23 Aligned_cols=127 Identities=9% Similarity=0.008 Sum_probs=77.4
Q ss_pred cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHH
Q 021362 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (313)
Q Consensus 98 ~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~ 177 (313)
+|+++. ..+.++.|.|||++||||+||.++...- .... +.+||-... ..+.+++++..
T Consensus 319 ndi~l~-~~~~~~iITGpN~gGKTt~lktigl~~~--maq~-------------G~~vpa~~~----~~i~~~~~i~~-- 376 (782)
T PRK00409 319 KDISLG-FDKTVLVITGPNTGGKTVTLKTLGLAAL--MAKS-------------GLPIPANEP----SEIPVFKEIFA-- 376 (782)
T ss_pred ceeEEC-CCceEEEEECCCCCCcHHHHHHHHHHHH--HHHh-------------CCCcccCCC----ccccccceEEE--
Confidence 344443 2456899999999999999999976531 0111 123333311 01223333210
Q ss_pred HhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHH-HHHhh
Q 021362 178 ARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWK-DVSSM 250 (313)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~-~l~~l 250 (313)
.++. .......+||+||+|++.|++++ ..+.++++|++...+|+ .+.. .+..+
T Consensus 377 -------------------~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l 436 (782)
T PRK00409 377 -------------------DIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYL 436 (782)
T ss_pred -------------------ecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 1111 11234568999999999998776 57788999999999997 2222 23333
Q ss_pred cc---ceEEEEcChHHHHH
Q 021362 251 FD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 251 ~~---~~i~vtHd~~~~~~ 266 (313)
.+ .++++||+.+++..
T Consensus 437 ~~~~~~vIitTH~~el~~~ 455 (782)
T PRK00409 437 RKRGAKIIATTHYKELKAL 455 (782)
T ss_pred HHCCCEEEEECChHHHHHH
Confidence 22 24799999888765
No 461
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.66 E-value=1.6e-07 Score=84.09 Aligned_cols=142 Identities=10% Similarity=0.023 Sum_probs=77.9
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHH-HHHHHHHhcccCCCCceeecCCCCCCCeEEEEe
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTL-AAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTL-lk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~ 156 (313)
+.++++++.+++ .+++|+++.|.|+|||||||| ++.++++.+ +. ..+.|+.
T Consensus 8 ~~~~~ld~~l~g-------------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~---~g------------~~~~yi~ 59 (230)
T PRK08533 8 LSRDELHKRLGG-------------GIPAGSLILIEGDESTGKSILSQRLAYGFLQ---NG------------YSVSYVS 59 (230)
T ss_pred EEEeeeehhhCC-------------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHh---CC------------CcEEEEe
Confidence 456666666654 268999999999999999999 689998875 22 2344555
Q ss_pred cCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCC-ccCCCCCCcCCCcchhhhhhc----cCceEEE
Q 021362 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILVG----LQHKVVI 231 (313)
Q Consensus 157 qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~LSgG~kqRv~ia~al~----~~ar~Li 231 (313)
.+. +..+.+... ...|.. .+.. ... +.... ...+.+|+++.++..+...+. .+++.++
T Consensus 60 ~e~--------~~~~~~~~~-~~~g~~----~~~~---~~~-~~l~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lV 122 (230)
T PRK08533 60 TQL--------TTTEFIKQM-MSLGYD----INKK---LIS-GKLLYIPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVII 122 (230)
T ss_pred CCC--------CHHHHHHHH-HHhCCc----hHHH---hhc-CcEEEEEecccccChHHHHHHHHHHHHHHHhcCCCEEE
Confidence 331 222222222 112211 1111 000 10000 111345666544433322222 2578899
Q ss_pred EcCCcccc----Ch----hhHHHHHhhccc--eEEEEcChHHH
Q 021362 232 VDGNYLFL----DG----GVWKDVSSMFDE--KWFIEVDLDTA 264 (313)
Q Consensus 232 ~d~~~lll----DE----~~~~~l~~l~~~--~i~vtHd~~~~ 264 (313)
.|++..++ |+ .+++.++.+.+. .+++||+....
T Consensus 123 IDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~~~~~ 165 (230)
T PRK08533 123 IDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTANPKEL 165 (230)
T ss_pred EECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEeccccc
Confidence 99988877 54 345555544332 57889987754
No 462
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.65 E-value=1.4e-08 Score=98.24 Aligned_cols=80 Identities=20% Similarity=0.183 Sum_probs=59.5
Q ss_pred ccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCce---eecCCCC--------------CCCeEEEEec
Q 021362 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS---SFDSQVK--------------PPDVATVLPM 157 (313)
Q Consensus 95 ~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~---i~~~g~~--------------~~~~i~~v~q 157 (313)
.+++++ |++.+|++++|+|+||+|||||+++|+|+.+ ++.+. |-.++.+ .+..+++.+|
T Consensus 144 ~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~---~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~ 219 (434)
T PRK07196 144 NAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ---ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPA 219 (434)
T ss_pred eeccce-EeEecceEEEEECCCCCCccHHHHHHhcccC---CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecC
Confidence 399999 9999999999999999999999999999988 77532 2222221 1224788888
Q ss_pred CCCCCCcccCCcccChHHHHHhc
Q 021362 158 DGFHLYLSQLDAMEDPKEAHARR 180 (313)
Q Consensus 158 d~~~~~~~~ltv~e~~~~~~~~~ 180 (313)
+...+. .+++.++.......+
T Consensus 220 d~s~~~--rl~a~e~a~~iAEyf 240 (434)
T PRK07196 220 DESPLM--RIKATELCHAIATYY 240 (434)
T ss_pred CCChhh--hHHHHHHHHHHHHHh
Confidence 855433 377888877665543
No 463
>COG4240 Predicted kinase [General function prediction only]
Probab=98.64 E-value=3.3e-07 Score=80.43 Aligned_cols=121 Identities=31% Similarity=0.488 Sum_probs=87.6
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHH------
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA------ 176 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~------ 176 (313)
+-.+.-|+||.||-|||||||.-.|..++. . .| ..++++++.|++++. -.+.+.+.
T Consensus 46 e~grPli~gisGpQGSGKStls~~i~~~L~---~-kg---------~ert~~lSLDDlYlt-----hadrl~La~q~npl 107 (300)
T COG4240 46 ERGRPLIVGISGPQGSGKSTLSALIVRLLA---A-KG---------LERTATLSLDDLYLT-----HADRLRLARQVNPL 107 (300)
T ss_pred hcCCceEEEeecCCCCchhhHHHHHHHHHH---H-hc---------ccceEEeehhhhhcc-----hHHHHHHHHhcCch
Confidence 345567999999999999999999999885 1 11 024677888877543 33333332
Q ss_pred HHhcCCCCCccHHHHHHHHHHhhc-CCCccCCCCCC----cCCCcchhhhhhccCceEEEEcCCccccCh
Q 021362 177 HARRGAPWTFNPLLLLNCLKNLRN-QGSVYAPSFDH----GVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (313)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~~LSg----G~kqRv~ia~al~~~ar~Li~d~~~lllDE 241 (313)
+..+|.|.+.|.....++|+.+.. .....+|.|.. |...|.--......+..++|+++-++.+-+
T Consensus 108 lq~RGlpGTHD~tlglnVLnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~~vdivIlEGWfvGfrP 177 (300)
T COG4240 108 LQTRGLPGTHDPTLGLNVLNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKFEVDIVILEGWFVGFRP 177 (300)
T ss_pred hcccCCCCCCchHHHHHHHHHHhcCCCCcccccccchhccCCCCCCCcccceecceeEEEEeeeeeeccc
Confidence 334688999999999999998873 34457778876 888886555555556889999998888766
No 464
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.63 E-value=1.2e-07 Score=91.65 Aligned_cols=96 Identities=21% Similarity=0.267 Sum_probs=63.8
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCC
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~ 183 (313)
+++|++++|+||||+||||+++.|++... -.. ....++++..|.+. ....+++.......|.+
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~---~~~---------~~~~v~~i~~d~~r-----igalEQL~~~a~ilGvp 250 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAV---IRH---------GADKVALLTTDSYR-----IGGHEQLRIYGKLLGVS 250 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHH---Hhc---------CCCeEEEEecCCcc-----hhHHHHHHHHHHHcCCc
Confidence 47899999999999999999999999652 110 11346777777542 35677777777777766
Q ss_pred CC--ccHHHHHHHHHHhhcCCCccCCCCCCcCCCcch
Q 021362 184 WT--FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 184 ~~--~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ 218 (313)
.. .+...+...+..+.......+.+ .|+.||..
T Consensus 251 ~~~v~~~~dl~~al~~l~~~d~VLIDT--aGrsqrd~ 285 (420)
T PRK14721 251 VRSIKDIADLQLMLHELRGKHMVLIDT--VGMSQRDQ 285 (420)
T ss_pred eecCCCHHHHHHHHHHhcCCCEEEecC--CCCCcchH
Confidence 42 23334445555555444445554 58888754
No 465
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.59 E-value=9.7e-09 Score=90.51 Aligned_cols=45 Identities=7% Similarity=-0.087 Sum_probs=35.0
Q ss_pred CCCCCc--CCCcchhhhhhccCceEEEEcCCc-----cccChhhHHHHHhhc
Q 021362 207 PSFDHG--VGDPVEDDILVGLQHKVVIVDGNY-----LFLDGGVWKDVSSMF 251 (313)
Q Consensus 207 ~~LSgG--~kqRv~ia~al~~~ar~Li~d~~~-----lllDE~~~~~l~~l~ 251 (313)
...+|+ +++++.||++++.+++++++|+|+ ..||+...+.+.++.
T Consensus 149 Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~ 200 (215)
T PTZ00132 149 SAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKEL 200 (215)
T ss_pred eCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHH
Confidence 345555 777899999999999999999999 999995544444443
No 466
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.58 E-value=5.7e-08 Score=94.21 Aligned_cols=103 Identities=12% Similarity=0.033 Sum_probs=68.1
Q ss_pred cccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCC---CCC-----------CCeEEEE----
Q 021362 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ---VKP-----------PDVATVL---- 155 (313)
Q Consensus 94 ~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g---~~~-----------~~~i~~v---- 155 (313)
+.+++++ |++.+|+.++|+|+||+|||||+++|+++.+. .+.|.+.+.| .+. ....+++
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~--~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvat 228 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEE--ADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVST 228 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhccccc--CCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeC
Confidence 3489988 99999999999999999999999999998841 3445565534 221 1123444
Q ss_pred -ecCCCCCCcccCCcccChHHHHHhcCCCC---CccHHHHHHHHHHhhc
Q 021362 156 -PMDGFHLYLSQLDAMEDPKEAHARRGAPW---TFNPLLLLNCLKNLRN 200 (313)
Q Consensus 156 -~qd~~~~~~~~ltv~e~~~~~~~~~~~~~---~~~~~~~~~~l~~l~~ 200 (313)
+|++..-.++.+ +...++..++.++... ..+..++.++++.++.
T Consensus 229 s~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L 276 (442)
T PRK06315 229 SDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGL 276 (442)
T ss_pred CCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCc
Confidence 777654443333 4444554444444321 3456778888888875
No 467
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.45 E-value=2.5e-07 Score=91.38 Aligned_cols=64 Identities=19% Similarity=0.200 Sum_probs=57.1
Q ss_pred EccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCC
Q 021362 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD 150 (313)
Q Consensus 80 ~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~ 150 (313)
+.++++.||... +++++++.+..|+.++|+||||+|||||++.|.|+++ |.+|++.++...+..
T Consensus 187 ~~d~~~v~Gq~~----~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllp---p~~g~e~le~~~i~s 250 (506)
T PRK09862 187 QHDLSDVIGQEQ----GKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLP---DLSNEEALESAAILS 250 (506)
T ss_pred ccCeEEEECcHH----HHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCC---CCCCcEEEecchhhh
Confidence 358899998877 9999999999999999999999999999999999999 999998887655433
No 468
>PRK13695 putative NTPase; Provisional
Probab=98.43 E-value=1e-07 Score=81.36 Aligned_cols=129 Identities=15% Similarity=0.110 Sum_probs=72.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~ 188 (313)
.++|.|+||||||||++.|++.+. + .|. . ..+|+.++... ......++.... ..+ .
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~---~-~G~-~--------~~g~~~~~~~~--~~~~~~~~~~~~---~~~-----~- 57 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK---E-EGY-K--------VGGFYTEEVRE--GGKRIGFKIIDL---DTG-----E- 57 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH---H-CCC-e--------EEEEEcHHHHh--cCCccceEEEEc---CCC-----C-
Confidence 478999999999999999999876 4 331 1 13444443110 000111110000 000 0
Q ss_pred HHHHHHHHHhhc-C---CCccCCCCCCcCCCcchhhhhhccCceEEEEcC--CccccChhhHHHHHhhccc---eEEEEc
Q 021362 189 LLLLNCLKNLRN-Q---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG--NYLFLDGGVWKDVSSMFDE---KWFIEV 259 (313)
Q Consensus 189 ~~~~~~l~~l~~-~---~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~--~~lllDE~~~~~l~~l~~~---~i~vtH 259 (313)
...+...+. . ..++...+|++++-+..+.......++++++|+ +.-.+|+...+.+.++.+. .++++|
T Consensus 58 ---~~~l~~~~~~~~~~~~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h 134 (174)
T PRK13695 58 ---EGILARVGFPSRPRVGKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLH 134 (174)
T ss_pred ---eEEccccCCCCCCceeeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEEC
Confidence 001111111 1 122334688888888887766667788888887 4445555666777776643 479999
Q ss_pred ChHHH
Q 021362 260 DLDTA 264 (313)
Q Consensus 260 d~~~~ 264 (313)
+....
T Consensus 135 ~~~~~ 139 (174)
T PRK13695 135 RRSVH 139 (174)
T ss_pred chhhH
Confidence 96543
No 469
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.41 E-value=1.7e-07 Score=90.65 Aligned_cols=63 Identities=17% Similarity=0.223 Sum_probs=54.6
Q ss_pred cEEEEccceEEcc-ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCC
Q 021362 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 76 ~~l~~~~l~~~y~-~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~ 146 (313)
+.++.+.+++.|. +.. +++++ |++.+|+.++|+|+||+|||||+++|+++.. ++.|.+.+.|.
T Consensus 128 ~~~~r~~v~~~l~tGi~----aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~---~d~~vi~~iGe 191 (433)
T PRK07594 128 PAMVRQPITQPLMTGIR----AIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD---ADSNVLVLIGE 191 (433)
T ss_pred CceeccCHhheeCCCce----eeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCC---CCEEEEEEECC
Confidence 3578888888885 334 99999 9999999999999999999999999999998 99987766554
No 470
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.40 E-value=3.1e-07 Score=64.78 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=29.4
Q ss_pred ccccccccCC-CcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 97 TSALASNVNV-KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 97 L~~vsl~i~~-Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+++..+++.+ |.++.|.||||||||||+.+|.=++-
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 3445566764 56999999999999999999988875
No 471
>PRK08149 ATP synthase SpaL; Validated
Probab=98.36 E-value=4.4e-07 Score=87.75 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=44.3
Q ss_pred ccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCC---ceeecCCCC
Q 021362 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---ASSFDSQVK 147 (313)
Q Consensus 95 ~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~---G~i~~~g~~ 147 (313)
.+++++ +++.+|++++|+|+||+|||||+++|+++.. ++. |.|...|.+
T Consensus 140 ~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~---~dv~v~g~Ig~rg~e 191 (428)
T PRK08149 140 RAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSE---ADVFVIGLIGERGRE 191 (428)
T ss_pred EEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCC---CCeEEEEEEeeCCcc
Confidence 399999 9999999999999999999999999999887 776 778777765
No 472
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.35 E-value=9.2e-07 Score=90.74 Aligned_cols=87 Identities=23% Similarity=0.291 Sum_probs=62.2
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHH
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~ 175 (313)
++++.++.+++|++++++||||+||||++..|++.+. ...| .+.++++..|.+. ....|++..
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~---~~~G---------~kkV~lit~Dt~R-----igA~eQL~~ 236 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCV---AREG---------ADQLALLTTDSFR-----IGALEQLRI 236 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHH---HHcC---------CCeEEEecCcccc-----hHHHHHHHH
Confidence 6778888888999999999999999999999999885 3333 1357778777542 345677776
Q ss_pred HHHhcCCCCC--ccHHHHHHHHHHhh
Q 021362 176 AHARRGAPWT--FNPLLLLNCLKNLR 199 (313)
Q Consensus 176 ~~~~~~~~~~--~~~~~~~~~l~~l~ 199 (313)
.....+.+.. .+...+.+.++.+.
T Consensus 237 ~a~~~gvpv~~~~~~~~l~~al~~~~ 262 (767)
T PRK14723 237 YGRILGVPVHAVKDAADLRFALAALG 262 (767)
T ss_pred HHHhCCCCccccCCHHHHHHHHHHhc
Confidence 6666665432 34455666666655
No 473
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=98.34 E-value=8e-06 Score=70.51 Aligned_cols=176 Identities=21% Similarity=0.262 Sum_probs=105.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHH--------HHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA--------HAR 179 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~--------~~~ 179 (313)
-++|+-||-|||||||.-.|---+.. -.-| ...+++++-|+|+ +|-.+.+++. +..
T Consensus 32 l~igfSgPQGsGKstl~~ald~~lt~--Ky~~---------E~s~~~~SvDDFY-----LThe~Q~eL~k~npnN~Llq~ 95 (282)
T KOG2878|consen 32 LVIGFSGPQGSGKSTLVFALDYKLTK--KYIQ---------EYSSATISVDDFY-----LTHEGQAELRKKNPNNALLQY 95 (282)
T ss_pred EEEEecCCCCCCceeehhhhHHHHHH--Hhcc---------ccceEEEEeccee-----eechhHHHHHhhCCCChhhcc
Confidence 48999999999999999877654431 1001 1146778888774 4555555443 234
Q ss_pred cCCCCCccHHHHHHHHHHhh----cCCCccCCCCC----CcCCCcchhhhhhc-cCceEEEEcCCccccCh---------
Q 021362 180 RGAPWTFNPLLLLNCLKNLR----NQGSVYAPSFD----HGVGDPVEDDILVG-LQHKVVIVDGNYLFLDG--------- 241 (313)
Q Consensus 180 ~~~~~~~~~~~~~~~l~~l~----~~~~~~~~~LS----gG~kqRv~ia~al~-~~ar~Li~d~~~lllDE--------- 241 (313)
+|.+.+.+.....++|..+- +.....+|.|. +|...|.--....- .+..++|+++..+.+.+
T Consensus 96 RGlaGtHD~kll~evLna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF~Pl~~~~v~a~ 175 (282)
T KOG2878|consen 96 RGLAGTHDLKLLVEVLNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGFKPLPADVVKAV 175 (282)
T ss_pred CCCCCcccHHHHHHHHHHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEecccccccccchhheecc
Confidence 56777888888888888765 22223444332 33344433222211 13778999999888877
Q ss_pred --------hhHHHH-------Hhhccc-eEEEEcChHHHHHHHh------hcccccCCchHHHHHHHHhcCCchhHHhhh
Q 021362 242 --------GVWKDV-------SSMFDE-KWFIEVDLDTAMQRVL------KRHISTGKPPDVAKWRIEYNDRPNAELIMK 299 (313)
Q Consensus 242 --------~~~~~l-------~~l~~~-~i~vtHd~~~~~~rv~------griv~~G~~~ev~~~~~~~~~~~~~~~i~~ 299 (313)
.+-+.| .+..+. +++-+.|++-+-++.+ ...+..|-.+|-+.+ +..+++|...++++
T Consensus 176 d~l~Gdl~~VN~kL~~Y~d~~~k~Idslvv~~~q~inyVYrWRLQqEhal~~~~~kGMsDEeV~~-FV~rYmP~Yk~YL~ 254 (282)
T KOG2878|consen 176 DPLQGDLEVVNKKLEAYYDAWDKYIDSLVVIKIQDINYVYRWRLQQEHALRQDGQKGMSDEEVND-FVSRYMPAYKAYLP 254 (282)
T ss_pred CcccccHHHHhhHHHHHHHHHHHhhhhEEEEEecCccHhhhhhHHHHHHHHHhhccCCCHHHHHH-HHHhhhhHHHhhhh
Confidence 000111 111122 3577889998888333 344456766666655 56688999987666
Q ss_pred c
Q 021362 300 S 300 (313)
Q Consensus 300 ~ 300 (313)
+
T Consensus 255 t 255 (282)
T KOG2878|consen 255 T 255 (282)
T ss_pred h
Confidence 4
No 474
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.32 E-value=3.7e-07 Score=85.49 Aligned_cols=58 Identities=24% Similarity=0.224 Sum_probs=47.4
Q ss_pred ccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCC
Q 021362 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145 (313)
Q Consensus 81 ~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g 145 (313)
..++..|... +.+++++ |.+.+|++++|+|+||+|||||+++|+|+.. |+.|.+..-|
T Consensus 47 ~~~~~~l~tG---i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~~vi~~iG 104 (326)
T cd01136 47 RPIDEVLPTG---VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTT---ADVNVIALIG 104 (326)
T ss_pred ccceeEcCCC---cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEe
Confidence 3444555432 2389999 9999999999999999999999999999998 9888776544
No 475
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.31 E-value=6.7e-07 Score=76.74 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=25.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+|++++|+|+||||||||+++|++++.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 689999999999999999999999986
No 476
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=98.29 E-value=2.3e-06 Score=83.98 Aligned_cols=192 Identities=25% Similarity=0.379 Sum_probs=131.1
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHH---hc
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA---RR 180 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~---~~ 180 (313)
...--++|+.|.+++||||.+..+...+.+. +.+| ....+..++++.++ . ....+++..... ..
T Consensus 41 ~~~~~~igv~~~s~~Gk~~~~~~i~~~l~~~-~~~~--------~~~~v~~ls~~~fY--~--~lt~~~~~~a~~~~~~f 107 (473)
T KOG4203|consen 41 GKEPFVIGVAGGTASGKSTVCEKIVEQLGAI-ERDG--------RQPQVVLLSQDSFY--K--VLTSEELAKAQEGKYNF 107 (473)
T ss_pred CcceEEEEeecCcccCceeehHHHHHHhhhh-hhcc--------CCCeEEEeecHHHH--H--hhchHHHHHhhhccccc
Confidence 3456689999999999999776666655321 2223 22345667776442 2 233444444332 23
Q ss_pred CCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcC
Q 021362 181 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVD 260 (313)
Q Consensus 181 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd 260 (313)
..+.+++.+.+...++.+..+....++-|+.=--+|..--..++..+.++++++-+.+.| +.++++.+..+|++-|
T Consensus 108 ~~pda~~~~l~~~~~~~~~kg~~v~ip~y~~~~~~~~~~~~~~l~~~~~~ilegil~~yd----~~~~~l~~~k~fvd~~ 183 (473)
T KOG4203|consen 108 DHPDAFDFELLYLTLKNLKKGKAVEIPVYDFVTHSRDEEKTIVVYPADVIILEGILAFYD----ERVRDLFTMKLFVDTD 183 (473)
T ss_pred cCCCCcchhhHHHHHhcccccceeeceeeeeecccCCCCceEEecCCCceeehhHHHHhH----HHHHHHhcceEEEecC
Confidence 456677777777777777766666666554333333221122344578888999888888 5777788888999999
Q ss_pred hHHHHHHHh-hcccccCCchHHHHHHHHhcCCchhH-HhhhcccCccEEeecCC
Q 021362 261 LDTAMQRVL-KRHISTGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 312 (313)
Q Consensus 261 ~~~~~~rv~-griv~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~~ 312 (313)
.+....|++ |-+.+.|..-+-+..+|...+.|+++ ||.|+++.||++|+...
T Consensus 184 ~d~rla~ri~r~~~~~g~~l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~~~ 237 (473)
T KOG4203|consen 184 ADVRLARRILRDIVERGRDLESILTQYSTFVKPAFEEFILPTKKYADVIIPRGG 237 (473)
T ss_pred cchhhHHHHhcchhhhcccHHHHHHHHHhhcCchHHHHhhHHHHhhhheeeccc
Confidence 999988444 77778888777777778889999988 99999999999998653
No 477
>PRK01889 GTPase RsgA; Reviewed
Probab=98.27 E-value=9.5e-07 Score=84.10 Aligned_cols=63 Identities=24% Similarity=0.304 Sum_probs=49.9
Q ss_pred ccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC-----CCCeEEEEecCCCCC
Q 021362 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----PPDVATVLPMDGFHL 162 (313)
Q Consensus 97 L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~-----~~~~i~~v~qd~~~~ 162 (313)
++.+.-.+.+|++++|+|+||+|||||++.|+|... ++.|+|.+++.. ....+.+++++.+.+
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~---~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~ 252 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV---QKTGAVREDDSKGRHTTTHRELHPLPSGGLLI 252 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc---cceeeEEECCCCCcchhhhccEEEecCCCeec
Confidence 444555678899999999999999999999999998 999999887532 223477788775443
No 478
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.24 E-value=1e-06 Score=76.91 Aligned_cols=28 Identities=39% Similarity=0.582 Sum_probs=26.2
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++|++++|+||+|||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999873
No 479
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.24 E-value=8.3e-07 Score=86.22 Aligned_cols=48 Identities=21% Similarity=0.165 Sum_probs=44.3
Q ss_pred ccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCC
Q 021362 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 95 ~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~ 146 (313)
.+++++ |++.+|++++|+|+||+|||||+++|+++.. ++.|.+.+.|+
T Consensus 152 ~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~---~d~~vi~~iGe 199 (441)
T PRK09099 152 RIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQ---CDVNVIALIGE 199 (441)
T ss_pred eeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCC---CCeEEEEEEcc
Confidence 389999 9999999999999999999999999999998 99888877664
No 480
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.22 E-value=1.3e-06 Score=83.37 Aligned_cols=53 Identities=21% Similarity=0.262 Sum_probs=47.3
Q ss_pred EEEEccceEEcccccccccccc-----------ccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 77 VVEARCMDEVYDALAQRLLPTS-----------ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~-----------~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
-++++||++.|.+.. .+|+ |+++.|.+|+.++|+||+|+|||||++.|+..+.
T Consensus 130 ri~Fe~LTf~YP~er---~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 130 RVLFENLTPLYPNER---LRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CeEEEEeeecCCCcc---ceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 599999999997532 2786 9999999999999999999999999999999875
No 481
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.21 E-value=9.2e-07 Score=85.83 Aligned_cols=46 Identities=20% Similarity=0.187 Sum_probs=42.9
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCC
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g 145 (313)
+++++ |++.+|++++|+|+||+|||||+++|+++.. |+.|.+..-|
T Consensus 135 ~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~---~~~~vi~~iG 180 (422)
T TIGR02546 135 AIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGAS---ADVNVIALIG 180 (422)
T ss_pred eehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEc
Confidence 89999 9999999999999999999999999999998 9988876644
No 482
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.20 E-value=1.3e-06 Score=75.51 Aligned_cols=26 Identities=35% Similarity=0.616 Sum_probs=24.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
|++++|+||||||||||+++|++...
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 78999999999999999999999875
No 483
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.18 E-value=1.1e-06 Score=85.57 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=42.7
Q ss_pred ccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCC
Q 021362 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 95 ~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~ 146 (313)
.+++++ |.+.+|+.++|+|+||+|||||+++|+++.+ ++.|.+..-|.
T Consensus 152 ~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~---~~~~vi~~iG~ 199 (440)
T TIGR01026 152 RSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE---ADVNVIALIGE 199 (440)
T ss_pred eeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC---CCEEEEEEEee
Confidence 389999 9999999999999999999999999999998 88877655443
No 484
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.18 E-value=1.7e-06 Score=83.80 Aligned_cols=63 Identities=14% Similarity=0.238 Sum_probs=51.7
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCC
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~ 146 (313)
.++.+.+++.|... +.+++++ |.+.+|+.++|+|+||+|||||+++|++..+ ++.|.|.+.|+
T Consensus 130 ~~~r~~i~~~l~TG---iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~gvI~~iGe 192 (432)
T PRK06793 130 AFEREEITDVFETG---IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK---ADINVISLVGE 192 (432)
T ss_pred chheechhhccCCC---CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCC---CCeEEEEeCCC
Confidence 46777888888643 2378874 9999999999999999999999999999998 88877655443
No 485
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.18 E-value=1.1e-06 Score=84.94 Aligned_cols=62 Identities=16% Similarity=0.079 Sum_probs=49.8
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCC
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~ 146 (313)
++-..++.-+.... .+++ .+|++.+|+.++|+|+||+|||||+++|+++.+ |+.|.|.+.|+
T Consensus 115 ~~R~~i~~~l~tGi---~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi~~iGe 176 (418)
T TIGR03498 115 MSRARVGEPLDTGV---RVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTD---ADVVVIALVGE 176 (418)
T ss_pred hhccCcccccCCcc---EEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEee
Confidence 44455555554432 2665 699999999999999999999999999999998 99998877664
No 486
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.16 E-value=3.2e-06 Score=80.62 Aligned_cols=73 Identities=21% Similarity=0.288 Sum_probs=53.7
Q ss_pred cccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccCh
Q 021362 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDP 173 (313)
Q Consensus 94 ~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~ 173 (313)
+.++++.++.+++|.+++|+||||+||||++..|++.+. ...| ...++++..|.+. ....|.+
T Consensus 124 l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~---~~~G---------~~~V~lit~D~~R-----~ga~EqL 186 (374)
T PRK14722 124 LPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCV---MRFG---------ASKVALLTTDSYR-----IGGHEQL 186 (374)
T ss_pred chhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHH---HhcC---------CCeEEEEeccccc-----ccHHHHH
Confidence 346777888899999999999999999999999998763 1111 1357888877552 3556777
Q ss_pred HHHHHhcCCC
Q 021362 174 KEAHARRGAP 183 (313)
Q Consensus 174 ~~~~~~~~~~ 183 (313)
.......+.+
T Consensus 187 ~~~a~~~gv~ 196 (374)
T PRK14722 187 RIFGKILGVP 196 (374)
T ss_pred HHHHHHcCCc
Confidence 7666666655
No 487
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.14 E-value=1.6e-06 Score=83.73 Aligned_cols=63 Identities=21% Similarity=0.150 Sum_probs=51.2
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCC
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~ 146 (313)
.++-..++..|... +.+++.+ |.+.+|++++|+|+||+|||||+++|+++.+ |+.+.+..-|+
T Consensus 111 ~~~R~~~~~~~~tG---i~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~---~~~~vi~~iGe 173 (411)
T TIGR03496 111 PLKRAPIDEPLDVG---VRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTE---ADVVVVGLIGE 173 (411)
T ss_pred HHhccCcceEeeee---EEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCC---CCEEEEEEEec
Confidence 45666777777532 2388888 9999999999999999999999999999998 88776655443
No 488
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.14 E-value=1.7e-06 Score=83.61 Aligned_cols=48 Identities=21% Similarity=0.216 Sum_probs=43.9
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~ 147 (313)
+++++ |.+.+|++++|+|+||+|||||+++|++..+ ++.|.+...|+.
T Consensus 127 ~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~---~~~gvi~~~Ger 174 (413)
T TIGR03497 127 AIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAK---ADINVIALIGER 174 (413)
T ss_pred eeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCeEEEEEEccc
Confidence 89999 9999999999999999999999999999998 999887766643
No 489
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.13 E-value=1.8e-05 Score=68.32 Aligned_cols=57 Identities=19% Similarity=0.272 Sum_probs=35.3
Q ss_pred HHhhccceEEEEcChHHHHHHHhhcccccCCchHHHHHHHHhcCCchhHHhhhcccCccEEeecC
Q 021362 247 VSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSI 311 (313)
Q Consensus 247 l~~l~~~~i~vtHd~~~~~~rv~griv~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~ad~ii~~~ 311 (313)
+..+++..++++.+.+....|+..|. |.+.+.+..++... .+ ..+.+..||.+|.|.
T Consensus 120 ~~~~~D~vv~V~~~~~~~~~Rl~~R~---~~s~~~~~~r~~~q-~~----~~~~~~~ad~vI~N~ 176 (188)
T TIGR00152 120 LRSLCDRVIVVDVSPQLQLERLMQRD---NLTEEEVQKRLASQ-MD----IEERLARADDVIDNS 176 (188)
T ss_pred cHHhCCEEEEEECCHHHHHHHHHHcC---CCCHHHHHHHHHhc-CC----HHHHHHhCCEEEECC
Confidence 44455666777777777776766443 55555555555543 22 234577899999875
No 490
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.11 E-value=2e-05 Score=68.88 Aligned_cols=24 Identities=46% Similarity=0.708 Sum_probs=22.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++.|.||+||||||+++.|.+.+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 688999999999999999998885
No 491
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.11 E-value=8.9e-06 Score=88.58 Aligned_cols=44 Identities=27% Similarity=0.465 Sum_probs=35.4
Q ss_pred cccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCC
Q 021362 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145 (313)
Q Consensus 100 vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g 145 (313)
++++...+.++||+|++|+|||||++.+++.+.. ...|.+++++
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~--~F~g~vfv~~ 243 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR--QFQSSVFIDR 243 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhh--cCCeEEEeec
Confidence 4567788999999999999999999999776652 4467776653
No 492
>PRK05922 type III secretion system ATPase; Validated
Probab=98.10 E-value=2.5e-06 Score=82.62 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=41.4
Q ss_pred ccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCC
Q 021362 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145 (313)
Q Consensus 95 ~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g 145 (313)
.+++.+ +.+.+|+.++|+|+||+|||||+++|++..+ ++.|.+..-|
T Consensus 146 r~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~---~d~gvi~liG 192 (434)
T PRK05922 146 KAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSK---STINVIALIG 192 (434)
T ss_pred eeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCC---CCceEEEEeC
Confidence 377776 9999999999999999999999999999988 8888875433
No 493
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.10 E-value=3.5e-06 Score=78.93 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=35.0
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~ 147 (313)
.+|++++|+||||+||||++..|++.+. +..|+|.+.+.+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~---~~g~~V~Li~~D 151 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK---AQGKKVLLAAGD 151 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCeEEEEecC
Confidence 5799999999999999999999999998 777787765544
No 494
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.09 E-value=1.8e-06 Score=83.74 Aligned_cols=48 Identities=23% Similarity=0.213 Sum_probs=42.1
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCC---ceeecCCCC
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---ASSFDSQVK 147 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~---G~i~~~g~~ 147 (313)
+++.+ |++.+|++++|+|+||+|||||+++|+++.+ |+. |.|.+.|.+
T Consensus 165 aID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~---~d~iv~g~Igerg~e 215 (455)
T PRK07960 165 AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQ---ADVIVVGLIGERGRE 215 (455)
T ss_pred eeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCC---CCEEEEEEEEECCeE
Confidence 66655 9999999999999999999999999999998 875 777777754
No 495
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.06 E-value=2e-05 Score=67.46 Aligned_cols=123 Identities=14% Similarity=0.095 Sum_probs=68.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHH-hcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCcc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR-INKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN 187 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl-~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~ 187 (313)
++.|.||+|+|||||.-.++-. .+ ....+.|+..+. +..+.+... ...|.+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~---------------~g~~v~~~s~e~--------~~~~~~~~~-~~~g~~---- 52 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLA---------------RGEPGLYVTLEE--------SPEELIENA-ESLGWD---- 52 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH---------------CCCcEEEEECCC--------CHHHHHHHH-HHcCCC----
Confidence 3678999999999998765433 22 123355555431 222222221 122322
Q ss_pred HHHHHHHHHHhh--cCCCccCCCCCCcCCC------cchhhhhhccCceEEEEcCCccccC---h----hhHHHHHhhcc
Q 021362 188 PLLLLNCLKNLR--NQGSVYAPSFDHGVGD------PVEDDILVGLQHKVVIVDGNYLFLD---G----GVWKDVSSMFD 252 (313)
Q Consensus 188 ~~~~~~~l~~l~--~~~~~~~~~LSgG~kq------Rv~ia~al~~~ar~Li~d~~~lllD---E----~~~~~l~~l~~ 252 (313)
.+. +...+ ...+..+..+|+|++| ......+...++++++.|++..++| + .+.+.+..+.+
T Consensus 53 ~~~----l~~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~ 128 (187)
T cd01124 53 LER----LEDEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKR 128 (187)
T ss_pred hHH----HHhcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHH
Confidence 111 11222 1123445588999988 4444444566899999999999988 4 23334434333
Q ss_pred c---eEEEEcChHH
Q 021362 253 E---KWFIEVDLDT 263 (313)
Q Consensus 253 ~---~i~vtHd~~~ 263 (313)
. .++++|+...
T Consensus 129 ~g~tvi~v~~~~~~ 142 (187)
T cd01124 129 FGVTTLLTSEQSGL 142 (187)
T ss_pred CCCEEEEEeccccC
Confidence 2 3688887664
No 496
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=98.05 E-value=3.3e-06 Score=81.88 Aligned_cols=62 Identities=19% Similarity=0.194 Sum_probs=48.9
Q ss_pred EEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC
Q 021362 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 79 ~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~ 147 (313)
+-.-++..|... +.+++++ +++.+|++++|+|+||+|||||+++|++... ++.+.|...|..
T Consensus 133 ~R~~i~~~l~tg---i~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~---~~v~vi~~iGer 194 (434)
T PRK08472 133 KRGLIDEVFSVG---VKSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCL---APIKVVALIGER 194 (434)
T ss_pred HcCCcceeccch---hHHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccC---CCEEEEEeeCcc
Confidence 334455555421 2289999 9999999999999999999999999999887 788877766543
No 497
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.05 E-value=3e-06 Score=73.89 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=30.9
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC-CceeecCC
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASSFDSQ 145 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~-~G~i~~~g 145 (313)
++|.+++|+|+||||||||++.|.+.+. +. .|.+.++|
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~---~~~~~~~~ld~ 60 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH---ELGVSTYLLDG 60 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH---hCCCCEEEEcC
Confidence 6899999999999999999999999885 33 23455554
No 498
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.05 E-value=3.8e-06 Score=85.45 Aligned_cols=84 Identities=14% Similarity=0.170 Sum_probs=65.2
Q ss_pred CCCccCCCCCCcCCCcchhhhhhccCc--eEEEEcCCccccCh----hhHHHHHhhc---cceEEEEcChHHHHH--HHh
Q 021362 201 QGSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDG----GVWKDVSSMF---DEKWFIEVDLDTAMQ--RVL 269 (313)
Q Consensus 201 ~~~~~~~~LSgG~kqRv~ia~al~~~a--r~Li~d~~~lllDE----~~~~~l~~l~---~~~i~vtHd~~~~~~--rv~ 269 (313)
..++...+|||||.||+-+|..+-..- =+.++|+|-+.|-+ .+++.|+.+. ...|+|.||.+.++. +++
T Consensus 474 tL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iI 553 (935)
T COG0178 474 TLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHII 553 (935)
T ss_pred cccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEE
Confidence 467788899999999999987764322 23568888888887 4555555444 456899999999988 666
Q ss_pred ----------hcccccCCchHHHHH
Q 021362 270 ----------KRHISTGKPPDVAKW 284 (313)
Q Consensus 270 ----------griv~~G~~~ev~~~ 284 (313)
|.+++.|+|+++...
T Consensus 554 DiGPgAG~~GGeIv~~Gtp~~i~~~ 578 (935)
T COG0178 554 DIGPGAGEHGGEIVAEGTPEELLAN 578 (935)
T ss_pred eeCCCCCcCCCEEEEccCHHHHHhC
Confidence 799999999999764
No 499
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=98.05 E-value=2.8e-06 Score=82.65 Aligned_cols=39 Identities=26% Similarity=0.297 Sum_probs=36.6
Q ss_pred ccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC
Q 021362 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ 137 (313)
Q Consensus 95 ~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~ 137 (313)
.+++++ |.+.+|++++|+|+||+|||||+++|+|+.. |+
T Consensus 157 ~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~---~d 195 (451)
T PRK05688 157 RSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTE---AD 195 (451)
T ss_pred eeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCC---CC
Confidence 489999 9999999999999999999999999999887 66
No 500
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.05 E-value=4.7e-06 Score=71.23 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=24.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
|++++|+||||||||||++.|++++.
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 67899999999999999999999885
Done!