Query 021362
Match_columns 313
No_of_seqs 437 out of 1414
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 03:03:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021362.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021362hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 6.7E-44 2.3E-48 336.0 9.7 204 75-283 22-253 (366)
2 3fvq_A Fe(3+) IONS import ATP- 100.0 4.3E-44 1.5E-48 337.0 6.4 198 77-283 4-228 (359)
3 3rlf_A Maltose/maltodextrin im 100.0 6.8E-44 2.3E-48 337.8 7.6 200 75-283 1-223 (381)
4 2it1_A 362AA long hypothetical 100.0 2E-42 6.9E-47 326.5 9.4 200 75-283 1-223 (362)
5 1z47_A CYSA, putative ABC-tran 100.0 3.1E-42 1.1E-46 324.3 9.0 199 76-283 13-235 (355)
6 2yyz_A Sugar ABC transporter, 100.0 1.4E-42 4.9E-47 327.2 6.7 200 75-283 1-223 (359)
7 1v43_A Sugar-binding transport 100.0 2.8E-42 9.5E-47 326.6 8.4 200 75-283 9-231 (372)
8 3gfo_A Cobalt import ATP-bindi 100.0 7.6E-43 2.6E-47 318.5 4.2 202 76-284 6-234 (275)
9 1g29_1 MALK, maltose transport 100.0 2.8E-42 9.7E-47 326.9 8.0 200 75-283 1-229 (372)
10 2olj_A Amino acid ABC transpor 100.0 3.7E-42 1.2E-46 312.2 7.0 199 76-283 23-248 (263)
11 1vpl_A ABC transporter, ATP-bi 100.0 3.4E-42 1.2E-46 311.3 5.8 202 73-283 11-235 (256)
12 4g1u_C Hemin import ATP-bindin 100.0 1E-41 3.5E-46 309.8 8.8 199 75-284 9-238 (266)
13 3tif_A Uncharacterized ABC tra 100.0 4.6E-42 1.6E-46 306.8 5.6 200 77-281 1-232 (235)
14 1b0u_A Histidine permease; ABC 100.0 6.1E-42 2.1E-46 310.7 6.3 198 77-283 6-242 (262)
15 2pcj_A ABC transporter, lipopr 100.0 8.2E-42 2.8E-46 303.1 5.9 193 76-277 3-222 (224)
16 1oxx_K GLCV, glucose, ABC tran 100.0 1.1E-41 3.6E-46 321.1 5.8 202 75-283 1-230 (353)
17 1g6h_A High-affinity branched- 100.0 1.2E-41 4E-46 308.1 3.5 197 75-280 5-239 (257)
18 1ji0_A ABC transporter; ATP bi 100.0 1.3E-40 4.6E-45 298.2 9.4 197 76-282 5-227 (240)
19 3d31_A Sulfate/molybdate ABC t 100.0 1.9E-40 6.4E-45 311.7 8.8 193 77-282 1-216 (348)
20 2ihy_A ABC transporter, ATP-bi 100.0 7.9E-41 2.7E-45 305.9 2.7 201 76-283 20-252 (279)
21 2yz2_A Putative ABC transporte 100.0 5.2E-40 1.8E-44 298.7 5.2 198 77-284 2-228 (266)
22 2onk_A Molybdate/tungstate ABC 100.0 6.5E-40 2.2E-44 293.7 3.2 193 77-283 1-216 (240)
23 1sgw_A Putative ABC transporte 100.0 4.5E-39 1.5E-43 283.4 7.1 179 76-266 9-198 (214)
24 2nq2_C Hypothetical ABC transp 100.0 9.8E-39 3.3E-43 288.2 7.7 191 77-282 4-216 (253)
25 2d2e_A SUFC protein; ABC-ATPas 100.0 6.4E-39 2.2E-43 289.0 3.7 196 75-279 1-229 (250)
26 2zu0_C Probable ATP-dependent 100.0 2E-38 7E-43 288.3 5.5 199 75-282 18-253 (267)
27 1mv5_A LMRA, multidrug resista 100.0 4.1E-38 1.4E-42 282.6 7.1 192 77-283 1-226 (243)
28 2ixe_A Antigen peptide transpo 100.0 1.4E-38 4.7E-43 290.0 3.0 196 77-284 16-246 (271)
29 2ff7_A Alpha-hemolysin translo 100.0 7.4E-38 2.5E-42 281.5 5.2 191 77-283 7-232 (247)
30 3nh6_A ATP-binding cassette SU 100.0 8.9E-38 3E-42 288.8 5.3 192 77-284 53-278 (306)
31 2pjz_A Hypothetical protein ST 100.0 2.7E-37 9.3E-42 280.2 6.8 191 77-284 1-216 (263)
32 2qi9_C Vitamin B12 import ATP- 100.0 1.4E-37 4.8E-42 279.9 3.5 188 77-283 4-222 (249)
33 2cbz_A Multidrug resistance-as 100.0 1.1E-37 3.7E-42 278.8 2.2 191 75-284 1-218 (237)
34 2pze_A Cystic fibrosis transme 100.0 7.7E-36 2.6E-40 265.5 10.2 185 77-283 6-218 (229)
35 2ghi_A Transport protein; mult 100.0 4.2E-37 1.4E-41 278.6 2.0 194 76-283 16-242 (260)
36 3gd7_A Fusion complex of cysti 100.0 1.1E-36 3.8E-41 289.9 4.6 189 77-283 19-242 (390)
37 3b5x_A Lipid A export ATP-bind 100.0 2.3E-34 8E-39 288.0 9.2 194 77-283 341-567 (582)
38 3b60_A Lipid A export ATP-bind 100.0 2.6E-34 8.8E-39 287.7 4.1 193 77-284 341-568 (582)
39 2yl4_A ATP-binding cassette SU 100.0 5.5E-34 1.9E-38 286.0 6.0 196 78-283 342-570 (595)
40 3qf4_A ABC transporter, ATP-bi 100.0 8.7E-34 3E-38 284.0 6.2 194 77-284 341-567 (587)
41 3qf4_B Uncharacterized ABC tra 100.0 4E-34 1.4E-38 287.0 3.3 193 77-284 354-579 (598)
42 4a82_A Cystic fibrosis transme 100.0 4.9E-34 1.7E-38 285.4 2.9 194 77-284 339-565 (578)
43 2bbs_A Cystic fibrosis transme 100.0 3.2E-33 1.1E-37 256.8 7.7 183 76-283 39-247 (290)
44 3aez_A Pantothenate kinase; tr 100.0 2.3E-32 7.8E-37 253.6 2.9 212 77-311 43-299 (312)
45 4f4c_A Multidrug resistance pr 100.0 1.4E-32 4.8E-37 296.6 1.6 197 77-284 1076-1305(1321)
46 3bk7_A ABC transporter ATP-bin 100.0 2.4E-31 8.1E-36 266.6 10.4 189 76-284 356-564 (607)
47 1yqt_A RNAse L inhibitor; ATP- 100.0 2.2E-31 7.7E-36 263.8 8.4 190 76-284 286-494 (538)
48 3ozx_A RNAse L inhibitor; ATP 100.0 6.3E-31 2.2E-35 260.2 8.1 190 76-282 268-476 (538)
49 4f4c_A Multidrug resistance pr 100.0 7.1E-31 2.4E-35 283.4 5.5 194 77-283 415-641 (1321)
50 3g5u_A MCG1178, multidrug resi 100.0 1.2E-30 4.3E-35 280.9 7.0 195 77-284 387-614 (1284)
51 3g5u_A MCG1178, multidrug resi 100.0 5.8E-31 2E-35 283.5 4.1 197 77-284 1030-1259(1284)
52 2iw3_A Elongation factor 3A; a 100.0 2.5E-30 8.5E-35 268.6 2.7 194 76-277 670-981 (986)
53 3j16_B RLI1P; ribosome recycli 100.0 5.9E-29 2E-33 249.0 9.6 187 81-284 350-560 (608)
54 3bk7_A ABC transporter ATP-bin 100.0 3.6E-29 1.2E-33 250.8 6.3 176 75-266 81-293 (607)
55 1yqt_A RNAse L inhibitor; ATP- 99.9 1.7E-28 5.9E-33 243.1 7.1 173 78-266 21-223 (538)
56 3ux8_A Excinuclease ABC, A sub 99.9 6.1E-28 2.1E-32 245.2 5.5 185 96-283 33-298 (670)
57 2iw3_A Elongation factor 3A; a 99.9 2.2E-27 7.4E-32 246.6 7.9 183 77-283 435-635 (986)
58 2jeo_A Uridine-cytidine kinase 99.9 3.5E-26 1.2E-30 204.6 12.7 197 96-310 14-214 (245)
59 3j16_B RLI1P; ribosome recycli 99.9 1.7E-26 5.9E-31 231.2 8.5 175 82-266 82-286 (608)
60 2npi_A Protein CLP1; CLP1-PCF1 99.9 1.3E-28 4.4E-33 239.3 -10.8 187 76-282 117-337 (460)
61 3ux8_A Excinuclease ABC, A sub 99.9 2.1E-25 7.2E-30 226.5 3.6 94 189-282 521-639 (670)
62 3c8u_A Fructokinase; YP_612366 99.9 1.1E-24 3.9E-29 190.0 7.0 182 104-310 19-207 (208)
63 3ozx_A RNAse L inhibitor; ATP 99.9 2.6E-24 8.9E-29 212.9 10.0 169 81-266 3-202 (538)
64 3b85_A Phosphate starvation-in 99.9 9.2E-25 3.2E-29 191.2 -0.0 144 85-266 8-163 (208)
65 2vf7_A UVRA2, excinuclease ABC 99.9 3.1E-23 1E-27 213.5 5.1 95 189-283 708-827 (842)
66 2r6f_A Excinuclease ABC subuni 99.9 2.7E-23 9.3E-28 214.7 3.7 94 190-283 824-942 (972)
67 3asz_A Uridine kinase; cytidin 99.9 1.2E-21 4E-26 170.5 13.1 178 104-312 3-188 (211)
68 3pih_A Uvrabc system protein A 99.9 3.3E-22 1.1E-26 207.3 8.0 95 189-283 783-902 (916)
69 2ygr_A Uvrabc system protein A 99.9 2.4E-22 8.1E-27 208.3 6.8 94 190-283 842-960 (993)
70 2v9p_A Replication protein E1; 99.8 5.8E-24 2E-28 196.0 -6.9 162 77-287 101-269 (305)
71 1sq5_A Pantothenate kinase; P- 99.8 1.4E-21 4.6E-26 180.8 2.0 206 77-311 37-296 (308)
72 4gp7_A Metallophosphoesterase; 99.8 3.4E-21 1.2E-25 163.0 3.9 140 99-266 1-164 (171)
73 3tqc_A Pantothenate kinase; bi 99.8 5.8E-21 2E-25 177.2 4.5 210 82-311 65-308 (321)
74 3sop_A Neuronal-specific septi 99.8 8.4E-21 2.9E-25 172.4 5.2 143 109-264 4-153 (270)
75 2ga8_A Hypothetical 39.9 kDa p 99.8 3.4E-20 1.2E-24 173.3 8.6 216 96-311 11-351 (359)
76 1tq4_A IIGP1, interferon-induc 99.8 5.2E-22 1.8E-26 190.1 -5.2 151 96-263 38-237 (413)
77 4aby_A DNA repair protein RECN 99.8 1E-20 3.6E-25 181.0 3.1 58 209-266 296-361 (415)
78 1z6g_A Guanylate kinase; struc 99.8 1.7E-21 5.8E-26 171.4 -3.6 154 96-266 12-199 (218)
79 2dpy_A FLII, flagellum-specifi 99.8 1.2E-21 4.1E-26 189.3 -9.5 174 76-281 130-342 (438)
80 1znw_A Guanylate kinase, GMP k 99.8 5.9E-21 2E-25 166.2 -4.4 146 96-266 11-193 (207)
81 3b9q_A Chloroplast SRP recepto 99.8 2.6E-20 8.7E-25 171.8 -1.4 156 82-259 79-255 (302)
82 2pt7_A CAG-ALFA; ATPase, prote 99.7 1.5E-18 5.1E-23 161.9 7.5 148 80-287 151-307 (330)
83 1odf_A YGR205W, hypothetical 3 99.7 1.5E-18 5.2E-23 159.1 7.1 191 104-310 28-275 (290)
84 1ye8_A Protein THEP1, hypothet 99.7 7.7E-19 2.6E-23 149.8 4.6 139 109-274 2-159 (178)
85 3qf7_A RAD50; ABC-ATPase, ATPa 99.7 1.7E-18 5.7E-23 163.7 5.2 62 204-265 275-349 (365)
86 2obl_A ESCN; ATPase, hydrolase 99.7 1.9E-19 6.4E-24 169.0 -3.3 168 76-281 44-253 (347)
87 2og2_A Putative signal recogni 99.7 7.5E-19 2.6E-23 165.4 0.7 145 98-260 148-313 (359)
88 2qnr_A Septin-2, protein NEDD5 99.7 3.2E-18 1.1E-22 157.7 0.3 156 81-262 2-168 (301)
89 1htw_A HI0065; nucleotide-bind 99.7 1.4E-17 4.9E-22 139.3 1.7 87 78-175 8-97 (158)
90 1e69_A Chromosome segregation 99.7 3.3E-17 1.1E-21 152.1 3.8 62 203-264 214-285 (322)
91 2o8b_B DNA mismatch repair pro 99.6 2.9E-17 1E-21 172.8 0.3 147 76-266 749-917 (1022)
92 1tf7_A KAIC; homohexamer, hexa 99.6 2.5E-17 8.7E-22 162.6 -2.3 157 77-264 12-188 (525)
93 1s96_A Guanylate kinase, GMP k 99.6 2.8E-16 9.6E-21 138.3 4.5 160 102-312 11-183 (219)
94 2eyu_A Twitching motility prot 99.6 5.4E-16 1.8E-20 140.0 5.0 128 77-264 5-136 (261)
95 1rj9_A FTSY, signal recognitio 99.5 3.3E-16 1.1E-20 144.4 -1.0 136 106-263 101-260 (304)
96 2qag_C Septin-7; cell cycle, c 99.5 2E-15 6.7E-20 144.8 4.3 159 77-263 11-179 (418)
97 1p9r_A General secretion pathw 99.5 8.7E-17 3E-21 154.3 -5.4 142 77-231 143-314 (418)
98 3szr_A Interferon-induced GTP- 99.5 8.5E-16 2.9E-20 154.2 1.1 153 77-264 10-199 (608)
99 1ewq_A DNA mismatch repair pro 99.5 3.1E-15 1.1E-19 153.2 3.7 126 95-265 567-702 (765)
100 1tf7_A KAIC; homohexamer, hexa 99.5 1.3E-14 4.5E-19 143.2 5.0 147 77-261 257-417 (525)
101 1cr0_A DNA primase/helicase; R 99.5 8.9E-16 3E-20 140.3 -3.6 152 96-261 24-197 (296)
102 2ehv_A Hypothetical protein PH 99.5 5.8E-15 2E-19 130.6 1.3 61 77-147 6-69 (251)
103 2i3b_A HCR-ntpase, human cance 99.5 9.4E-15 3.2E-19 125.6 1.6 142 107-274 1-167 (189)
104 3thx_B DNA mismatch repair pro 99.4 5.6E-15 1.9E-19 153.6 -2.2 130 95-266 661-801 (918)
105 2rcn_A Probable GTPase ENGC; Y 99.4 5.6E-15 1.9E-19 138.7 -2.5 117 96-223 205-328 (358)
106 1pui_A ENGB, probable GTP-bind 99.4 4.1E-14 1.4E-18 121.9 2.0 157 76-242 2-184 (210)
107 2o5v_A DNA replication and rep 99.4 4.4E-14 1.5E-18 133.0 2.0 77 204-281 260-354 (359)
108 4a74_A DNA repair and recombin 99.4 3.2E-15 1.1E-19 130.6 -5.7 30 103-132 21-50 (231)
109 2gza_A Type IV secretion syste 99.4 1.1E-13 3.9E-18 130.3 3.6 63 79-146 137-211 (361)
110 2yv5_A YJEQ protein; hydrolase 99.4 1.4E-13 4.9E-18 126.6 4.1 114 102-220 160-299 (302)
111 1rz3_A Hypothetical protein rb 99.4 2E-13 6.9E-18 117.9 4.2 177 103-311 18-200 (201)
112 3jvv_A Twitching mobility prot 99.4 9.2E-13 3.2E-17 123.8 8.8 117 96-266 105-236 (356)
113 3qkt_A DNA double-strand break 99.4 1.6E-12 5.4E-17 121.4 9.9 60 204-263 244-316 (339)
114 4ad8_A DNA repair protein RECN 99.4 4.5E-13 1.5E-17 132.0 6.4 62 205-266 393-463 (517)
115 2f1r_A Molybdopterin-guanine d 99.4 5.7E-14 1.9E-18 118.9 -0.6 100 108-228 3-123 (171)
116 2bdt_A BH3686; alpha-beta prot 99.3 4.9E-14 1.7E-18 120.1 -2.1 158 107-281 2-182 (189)
117 3thx_A DNA mismatch repair pro 99.3 2.5E-13 8.5E-18 141.5 2.8 148 77-266 631-790 (934)
118 1nlf_A Regulatory protein REPA 99.3 4.1E-12 1.4E-16 115.1 10.1 143 103-265 26-185 (279)
119 1lw7_A Transcriptional regulat 99.3 6.1E-15 2.1E-19 139.1 -9.1 167 96-283 157-355 (365)
120 2oap_1 GSPE-2, type II secreti 99.3 6.5E-14 2.2E-18 137.6 -2.2 49 96-147 249-297 (511)
121 3tr0_A Guanylate kinase, GMP k 99.3 1.2E-12 4E-17 112.5 5.3 31 101-131 1-31 (205)
122 2qag_B Septin-6, protein NEDD5 99.3 2.5E-13 8.6E-18 130.1 0.7 171 77-260 16-218 (427)
123 3e70_C DPA, signal recognition 99.3 3.1E-13 1E-17 125.8 1.1 70 103-177 125-208 (328)
124 2qm8_A GTPase/ATPase; G protei 99.3 1.7E-13 5.9E-18 128.0 -1.5 79 75-160 27-117 (337)
125 1zp6_A Hypothetical protein AT 99.3 2.3E-13 7.8E-18 115.8 -1.4 129 103-250 5-143 (191)
126 1in4_A RUVB, holliday junction 99.3 6.5E-14 2.2E-18 130.4 -5.9 132 77-219 18-173 (334)
127 1pzn_A RAD51, DNA repair and r 99.3 2.9E-13 1E-17 127.0 -1.6 118 96-241 119-246 (349)
128 3euj_A Chromosome partition pr 99.3 3.9E-12 1.3E-16 123.7 6.2 48 96-147 19-66 (483)
129 2yhs_A FTSY, cell division pro 99.2 1.9E-12 6.4E-17 125.8 3.5 77 97-178 283-373 (503)
130 2w0m_A SSO2452; RECA, SSPF, un 99.2 6.9E-12 2.4E-16 109.1 6.2 142 96-262 11-169 (235)
131 2x8a_A Nuclear valosin-contain 99.2 8.1E-14 2.8E-18 126.5 -6.9 119 96-241 35-161 (274)
132 1wb9_A DNA mismatch repair pro 99.2 5.8E-12 2E-16 129.7 5.8 130 96-266 597-735 (800)
133 1nij_A Hypothetical protein YJ 99.2 5.3E-15 1.8E-19 137.1 -15.3 137 108-261 5-189 (318)
134 1u0l_A Probable GTPase ENGC; p 99.2 5.7E-12 1.9E-16 115.8 3.5 103 102-211 164-294 (301)
135 1iy2_A ATP-dependent metallopr 99.2 2E-13 6.8E-18 123.6 -6.6 137 77-241 49-193 (278)
136 2ewv_A Twitching motility prot 99.2 2.2E-11 7.6E-16 115.1 6.7 45 96-145 127-172 (372)
137 3pih_A Uvrabc system protein A 99.2 9E-13 3.1E-17 136.9 -3.5 142 125-283 386-560 (916)
138 2bbw_A Adenylate kinase 4, AK4 99.2 1.5E-13 5.2E-18 122.2 -8.3 123 106-242 26-184 (246)
139 1t9h_A YLOQ, probable GTPase E 99.1 1.1E-12 3.8E-17 120.8 -3.7 111 102-216 168-303 (307)
140 1ixz_A ATP-dependent metallopr 99.1 3.6E-13 1.2E-17 120.1 -7.3 137 77-241 25-169 (254)
141 2qt1_A Nicotinamide riboside k 99.1 2.4E-10 8.2E-15 98.5 8.4 136 102-272 16-151 (207)
142 4e22_A Cytidylate kinase; P-lo 99.1 3.2E-11 1.1E-15 107.9 2.8 174 105-312 25-228 (252)
143 1qhl_A Protein (cell division 99.1 9.3E-12 3.2E-16 109.9 -1.0 57 77-148 9-65 (227)
144 2r6f_A Excinuclease ABC subuni 99.0 3.3E-11 1.1E-15 125.0 1.0 116 166-283 451-600 (972)
145 1uj2_A Uridine-cytidine kinase 99.0 2.6E-09 9E-14 95.1 13.0 185 106-308 21-210 (252)
146 3vaa_A Shikimate kinase, SK; s 99.0 1.9E-09 6.5E-14 92.5 11.1 38 95-132 13-50 (199)
147 3kta_A Chromosome segregation 99.0 2.8E-10 9.5E-15 95.9 5.3 114 98-218 18-152 (182)
148 2cvh_A DNA repair and recombin 99.0 7.7E-10 2.6E-14 95.5 8.2 130 96-262 8-157 (220)
149 3nwj_A ATSK2; P loop, shikimat 99.0 8E-11 2.7E-15 105.4 1.2 53 76-132 16-73 (250)
150 3lnc_A Guanylate kinase, GMP k 99.0 1.5E-10 5E-15 101.7 2.8 37 96-132 16-53 (231)
151 2ygr_A Uvrabc system protein A 98.9 9.3E-11 3.2E-15 121.9 0.2 91 193-283 503-617 (993)
152 1a7j_A Phosphoribulokinase; tr 98.9 2.4E-09 8.3E-14 97.7 8.8 188 106-311 4-215 (290)
153 1vma_A Cell division protein F 98.9 1.2E-09 4.1E-14 100.5 6.1 111 99-249 96-210 (306)
154 1udx_A The GTP-binding protein 98.8 9.6E-11 3.3E-15 112.2 -4.3 117 97-232 147-276 (416)
155 3uie_A Adenylyl-sulfate kinase 98.8 7.8E-10 2.7E-14 95.0 1.6 53 81-141 3-55 (200)
156 3k1j_A LON protease, ATP-depen 98.8 8.4E-10 2.9E-14 110.5 1.7 166 78-252 35-226 (604)
157 2kjq_A DNAA-related protein; s 98.8 1.5E-08 5E-13 83.4 8.8 32 96-132 30-61 (149)
158 1sxj_E Activator 1 40 kDa subu 98.8 9.8E-09 3.4E-13 95.2 8.2 127 109-266 38-179 (354)
159 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 8.1E-10 2.8E-14 104.9 0.6 154 103-280 16-210 (392)
160 2vf7_A UVRA2, excinuclease ABC 98.7 3.4E-09 1.2E-13 109.3 2.1 90 194-283 362-475 (842)
161 1ls1_A Signal recognition part 98.7 5.1E-09 1.7E-13 95.8 2.8 56 78-144 77-132 (295)
162 1lvg_A Guanylate kinase, GMP k 98.7 1.2E-08 4.2E-13 87.6 4.2 28 105-132 2-29 (198)
163 1f2t_B RAD50 ABC-ATPase; DNA d 98.7 6.1E-09 2.1E-13 85.7 2.1 60 203-262 52-124 (148)
164 1jjv_A Dephospho-COA kinase; P 98.6 3.5E-07 1.2E-11 78.3 12.5 70 229-311 107-176 (206)
165 2j41_A Guanylate kinase; GMP, 98.6 2.1E-08 7.3E-13 85.6 3.8 35 102-139 1-35 (207)
166 3a00_A Guanylate kinase, GMP k 98.6 1.8E-08 6.3E-13 85.4 2.7 26 107-132 1-26 (186)
167 2dhr_A FTSH; AAA+ protein, hex 98.6 3.9E-09 1.3E-13 103.2 -1.9 136 77-237 40-187 (499)
168 2px0_A Flagellar biosynthesis 98.6 6.1E-07 2.1E-11 82.0 12.6 43 105-160 103-145 (296)
169 2p67_A LAO/AO transport system 98.5 7.9E-09 2.7E-13 96.3 -1.5 63 76-145 29-91 (341)
170 1kgd_A CASK, peripheral plasma 98.5 5.8E-08 2E-12 81.9 3.7 28 105-132 3-30 (180)
171 3ec2_A DNA replication protein 98.5 4.3E-08 1.5E-12 82.3 2.5 36 101-139 32-67 (180)
172 1zu4_A FTSY; GTPase, signal re 98.5 8.7E-08 3E-12 88.6 4.7 47 98-147 96-142 (320)
173 2ius_A DNA translocase FTSK; n 98.5 1.5E-08 5.3E-13 99.0 -0.5 155 99-262 159-343 (512)
174 3lda_A DNA repair protein RAD5 98.5 1.5E-07 5E-12 89.6 5.9 30 103-132 174-205 (400)
175 2if2_A Dephospho-COA kinase; a 98.4 6.5E-07 2.2E-11 76.4 8.3 70 228-311 106-175 (204)
176 4eun_A Thermoresistant glucoki 98.4 1.8E-07 6.2E-12 80.0 4.1 31 101-131 23-53 (200)
177 1w1w_A Structural maintenance 98.4 2.3E-07 7.7E-12 89.0 4.8 57 208-264 333-400 (430)
178 2vp4_A Deoxynucleoside kinase; 98.4 1.3E-07 4.6E-12 82.8 2.8 31 100-130 13-43 (230)
179 1n0w_A DNA repair protein RAD5 98.3 2.7E-07 9.3E-12 80.5 4.2 28 103-130 20-47 (243)
180 1svm_A Large T antigen; AAA+ f 98.3 1.6E-07 5.4E-12 88.7 2.8 42 96-143 158-199 (377)
181 3cr8_A Sulfate adenylyltranfer 98.3 2.6E-07 8.9E-12 91.4 4.0 41 102-145 364-406 (552)
182 3tau_A Guanylate kinase, GMP k 98.3 3.6E-07 1.2E-11 78.8 4.3 28 105-132 6-33 (208)
183 3kta_B Chromosome segregation 98.3 2.5E-07 8.6E-12 78.0 2.9 63 203-265 59-131 (173)
184 3m6a_A ATP-dependent protease 98.2 1.7E-07 5.7E-12 92.7 0.9 61 78-146 84-144 (543)
185 3t61_A Gluconokinase; PSI-biol 98.2 1.3E-05 4.3E-10 68.3 11.9 26 107-132 18-43 (202)
186 2r6a_A DNAB helicase, replicat 98.2 1.5E-06 5.1E-11 83.9 6.6 141 96-259 192-362 (454)
187 1knq_A Gluconate kinase; ALFA/ 98.2 9.5E-07 3.3E-11 73.5 4.2 28 105-132 6-33 (175)
188 3ney_A 55 kDa erythrocyte memb 98.1 1.3E-06 4.6E-11 75.0 4.0 31 102-132 14-44 (197)
189 1kag_A SKI, shikimate kinase I 98.1 1.2E-06 4E-11 72.6 3.4 27 106-132 3-29 (173)
190 3r20_A Cytidylate kinase; stru 98.1 8.3E-06 2.8E-10 71.9 8.9 60 253-312 148-211 (233)
191 1oix_A RAS-related protein RAB 98.1 1.2E-06 4E-11 74.2 3.2 36 108-146 30-76 (191)
192 1cke_A CK, MSSA, protein (cyti 98.1 8.7E-07 3E-11 76.7 1.9 37 107-143 5-41 (227)
193 2ffh_A Protein (FFH); SRP54, s 98.1 1.7E-06 6E-11 82.8 3.8 54 80-144 79-132 (425)
194 4eaq_A DTMP kinase, thymidylat 98.1 3.3E-06 1.1E-10 74.1 5.1 37 96-132 12-51 (229)
195 2f6r_A COA synthase, bifunctio 98.0 4.4E-06 1.5E-10 75.5 6.0 72 227-311 181-252 (281)
196 1j8m_F SRP54, signal recogniti 98.0 1.5E-06 5.2E-11 79.4 2.3 54 80-143 77-131 (297)
197 2www_A Methylmalonic aciduria 98.0 3E-06 1E-10 79.1 4.1 40 105-147 72-111 (349)
198 3ice_A Transcription terminati 98.0 2.6E-06 8.7E-11 80.3 3.6 53 77-132 133-199 (422)
199 2pez_A Bifunctional 3'-phospho 98.0 2.8E-06 9.5E-11 71.0 3.5 28 105-132 3-30 (179)
200 1f2t_A RAD50 ABC-ATPase; DNA d 98.0 6.3E-06 2.2E-10 67.4 4.8 31 100-131 17-47 (149)
201 1m7g_A Adenylylsulfate kinase; 98.0 2.5E-06 8.6E-11 73.4 2.5 35 102-139 20-54 (211)
202 1sxj_C Activator 1 40 kDa subu 98.0 1.2E-06 4.3E-11 80.9 0.5 53 81-140 22-76 (340)
203 2f9l_A RAB11B, member RAS onco 97.9 3.4E-06 1.2E-10 71.5 3.0 23 109-131 7-29 (199)
204 3lw7_A Adenylate kinase relate 97.9 0.00011 3.8E-09 59.9 12.2 78 227-311 78-160 (179)
205 2dr3_A UPF0273 protein PH0284; 97.9 6.4E-06 2.2E-10 71.8 4.3 37 96-132 11-49 (247)
206 2grj_A Dephospho-COA kinase; T 97.9 3.5E-05 1.2E-09 65.7 7.9 27 106-132 11-37 (192)
207 2yvu_A Probable adenylyl-sulfa 97.8 1.1E-05 3.7E-10 67.8 4.4 32 101-132 7-38 (186)
208 3trf_A Shikimate kinase, SK; a 97.8 7E-05 2.4E-09 62.5 8.8 26 107-132 5-30 (185)
209 3t34_A Dynamin-related protein 97.8 5.8E-06 2E-10 77.2 2.2 56 80-142 11-68 (360)
210 1w1w_A Structural maintenance 97.8 7E-06 2.4E-10 78.5 2.8 46 77-132 6-51 (430)
211 1y63_A LMAJ004144AAA protein; 97.7 1.8E-05 6.2E-10 66.5 4.1 32 99-130 2-33 (184)
212 2qag_A Septin-2, protein NEDD5 97.7 4E-06 1.4E-10 78.6 -0.2 46 77-132 17-62 (361)
213 2qor_A Guanylate kinase; phosp 97.7 1.7E-05 6E-10 67.7 3.4 30 103-132 8-37 (204)
214 3auy_A DNA double-strand break 97.7 1.2E-05 4.1E-10 75.5 2.1 58 206-263 278-348 (371)
215 3qks_A DNA double-strand break 97.7 3.6E-05 1.2E-09 66.1 4.8 32 100-132 17-48 (203)
216 3bh0_A DNAB-like replicative h 97.6 0.00014 4.7E-09 66.7 8.0 36 96-131 57-92 (315)
217 4a1f_A DNAB helicase, replicat 97.6 5.2E-05 1.8E-09 70.4 4.9 37 96-132 35-71 (338)
218 3hr8_A Protein RECA; alpha and 97.5 3.8E-05 1.3E-09 71.8 3.6 36 103-141 57-92 (356)
219 1f6b_A SAR1; gtpases, N-termin 97.5 1.7E-05 6E-10 67.2 1.0 41 85-129 7-47 (198)
220 3cm0_A Adenylate kinase; ATP-b 97.5 5.3E-05 1.8E-09 63.2 3.7 28 105-132 2-29 (186)
221 1q3t_A Cytidylate kinase; nucl 97.5 7.4E-05 2.5E-09 65.3 4.2 29 104-132 13-41 (236)
222 1ega_A Protein (GTP-binding pr 97.5 4.3E-05 1.5E-09 69.7 2.5 27 105-131 6-32 (301)
223 2ohf_A Protein OLA1, GTP-bindi 97.4 6.1E-05 2.1E-09 71.3 3.4 40 103-145 18-68 (396)
224 2gj8_A MNME, tRNA modification 97.4 5.7E-05 2E-09 62.4 2.9 27 105-131 2-28 (172)
225 4i1u_A Dephospho-COA kinase; s 97.4 0.002 6.9E-08 55.6 12.5 73 227-311 112-184 (210)
226 3kb2_A SPBC2 prophage-derived 97.4 8.8E-05 3E-09 60.8 3.7 24 109-132 3-26 (173)
227 2p5t_B PEZT; postsegregational 97.4 6.2E-05 2.1E-09 66.7 2.9 36 96-132 22-57 (253)
228 2dy1_A Elongation factor G; tr 97.4 9.3E-05 3.2E-09 74.8 4.4 43 101-145 3-45 (665)
229 1np6_A Molybdopterin-guanine d 97.4 9.2E-05 3.1E-09 62.2 3.7 25 108-132 7-31 (174)
230 1m2o_B GTP-binding protein SAR 97.4 8.4E-05 2.9E-09 62.4 3.4 34 96-130 13-46 (190)
231 1lv7_A FTSH; alpha/beta domain 97.4 9.9E-05 3.4E-09 65.1 3.9 35 96-132 36-70 (257)
232 3auy_A DNA double-strand break 97.3 0.00013 4.3E-09 68.4 4.4 33 96-129 15-47 (371)
233 1qhx_A CPT, protein (chloramph 97.3 0.00014 4.9E-09 60.1 3.9 26 107-132 3-28 (178)
234 2wji_A Ferrous iron transport 97.3 0.00011 3.7E-09 60.1 2.8 24 108-131 4-27 (165)
235 2rhm_A Putative kinase; P-loop 97.2 0.00019 6.4E-09 60.0 4.0 28 105-132 3-30 (193)
236 1kht_A Adenylate kinase; phosp 97.2 0.00019 6.6E-09 59.7 4.0 27 106-132 2-28 (192)
237 3iij_A Coilin-interacting nucl 97.2 0.00018 6.2E-09 59.7 3.7 29 104-132 8-36 (180)
238 2ze6_A Isopentenyl transferase 97.2 0.00018 6.3E-09 63.7 3.9 25 108-132 2-26 (253)
239 1vht_A Dephospho-COA kinase; s 97.2 0.0002 7E-09 61.4 4.0 24 106-129 3-26 (218)
240 4ag6_A VIRB4 ATPase, type IV s 97.2 0.00028 9.6E-09 66.4 5.2 37 106-145 34-70 (392)
241 2zr9_A Protein RECA, recombina 97.2 0.00017 5.8E-09 67.2 3.6 30 103-132 57-86 (349)
242 3kl4_A SRP54, signal recogniti 97.2 0.00018 6E-09 69.0 3.8 33 106-141 96-128 (433)
243 1mky_A Probable GTP-binding pr 97.2 0.00017 5.9E-09 69.1 3.6 24 108-131 181-204 (439)
244 2jaq_A Deoxyguanosine kinase; 97.2 0.00022 7.4E-09 60.1 3.8 24 109-132 2-25 (205)
245 4fcw_A Chaperone protein CLPB; 97.2 8.8E-05 3E-09 67.0 1.4 42 96-140 25-77 (311)
246 1via_A Shikimate kinase; struc 97.2 0.00019 6.5E-09 59.4 3.3 24 109-132 6-29 (175)
247 2wjg_A FEOB, ferrous iron tran 97.1 0.0002 7E-09 59.3 3.0 23 108-130 8-30 (188)
248 1gtv_A TMK, thymidylate kinase 97.1 0.00011 3.9E-09 62.5 1.4 24 109-132 2-25 (214)
249 2ce7_A Cell division protein F 97.1 6.5E-05 2.2E-09 72.9 -0.2 48 79-132 27-74 (476)
250 1uf9_A TT1252 protein; P-loop, 97.1 0.00027 9.2E-09 59.5 3.6 72 227-311 106-177 (203)
251 1ypw_A Transitional endoplasmi 97.1 0.00023 7.8E-09 73.5 3.7 32 101-132 232-263 (806)
252 2zej_A Dardarin, leucine-rich 97.1 0.00014 4.9E-09 60.5 1.8 24 109-132 4-27 (184)
253 2plr_A DTMP kinase, probable t 97.1 0.00034 1.2E-08 59.2 4.2 27 106-132 3-29 (213)
254 2c95_A Adenylate kinase 1; tra 97.1 0.00033 1.1E-08 58.6 4.0 29 104-132 6-34 (196)
255 2v54_A DTMP kinase, thymidylat 97.1 0.00031 1.1E-08 59.3 3.8 26 106-131 3-28 (204)
256 3d3q_A TRNA delta(2)-isopenten 97.1 0.00055 1.9E-08 63.4 5.7 25 108-132 8-32 (340)
257 2bwj_A Adenylate kinase 5; pho 97.1 0.00017 6E-09 60.5 2.1 30 103-132 8-37 (199)
258 1xjc_A MOBB protein homolog; s 97.1 0.00034 1.1E-08 58.5 3.8 25 108-132 5-29 (169)
259 1ly1_A Polynucleotide kinase; 97.1 0.00029 1E-08 58.0 3.4 22 108-129 3-24 (181)
260 1tev_A UMP-CMP kinase; ploop, 97.1 0.00036 1.2E-08 58.1 4.0 27 106-132 2-28 (196)
261 2wwf_A Thymidilate kinase, put 97.1 0.00036 1.2E-08 59.2 3.9 28 105-132 8-35 (212)
262 3ake_A Cytidylate kinase; CMP 97.0 0.00037 1.3E-08 58.9 3.8 24 109-132 4-27 (208)
263 3cf0_A Transitional endoplasmi 97.0 0.00034 1.2E-08 63.4 3.7 32 101-132 43-74 (301)
264 1gvn_B Zeta; postsegregational 97.0 0.00037 1.3E-08 63.0 3.8 29 103-131 29-57 (287)
265 1ex7_A Guanylate kinase; subst 97.0 0.00035 1.2E-08 59.3 3.4 22 110-131 4-25 (186)
266 1nn5_A Similar to deoxythymidy 97.0 0.00042 1.4E-08 58.9 3.9 28 105-132 7-34 (215)
267 2vli_A Antibiotic resistance p 97.0 0.00028 9.7E-09 58.4 2.5 28 105-132 3-30 (183)
268 2qtf_A Protein HFLX, GTP-bindi 97.0 0.00032 1.1E-08 65.7 3.0 37 109-145 181-225 (364)
269 1nks_A Adenylate kinase; therm 96.9 0.00045 1.6E-08 57.4 3.5 24 109-132 3-26 (194)
270 2z0h_A DTMP kinase, thymidylat 96.9 0.00055 1.9E-08 57.3 3.8 24 109-132 2-25 (197)
271 3lxx_A GTPase IMAP family memb 96.9 0.00041 1.4E-08 60.5 2.8 24 109-132 31-54 (239)
272 1aky_A Adenylate kinase; ATP:A 96.9 0.00066 2.3E-08 58.3 4.1 27 106-132 3-29 (220)
273 2cdn_A Adenylate kinase; phosp 96.8 0.00078 2.7E-08 56.9 4.2 28 105-132 18-45 (201)
274 1jal_A YCHF protein; nucleotid 96.8 0.00093 3.2E-08 62.5 4.6 39 107-145 2-48 (363)
275 1ukz_A Uridylate kinase; trans 96.8 0.00085 2.9E-08 56.7 4.0 28 105-132 13-40 (203)
276 1zuh_A Shikimate kinase; alpha 96.8 0.00085 2.9E-08 54.9 3.9 26 107-132 7-32 (168)
277 1qf9_A UMP/CMP kinase, protein 96.8 0.00087 3E-08 55.7 4.0 26 107-132 6-31 (194)
278 2pbr_A DTMP kinase, thymidylat 96.8 0.00082 2.8E-08 55.9 3.8 24 109-132 2-25 (195)
279 1zd8_A GTP:AMP phosphotransfer 96.8 0.00072 2.4E-08 58.4 3.5 28 105-132 5-32 (227)
280 3k53_A Ferrous iron transport 96.8 0.0005 1.7E-08 61.3 2.5 23 109-131 5-27 (271)
281 1e6c_A Shikimate kinase; phosp 96.8 0.00074 2.5E-08 55.3 3.3 25 108-132 3-27 (173)
282 3fb4_A Adenylate kinase; psych 96.8 0.00085 2.9E-08 57.2 3.8 24 109-132 2-25 (216)
283 2iyv_A Shikimate kinase, SK; t 96.7 0.00072 2.5E-08 56.2 3.1 42 228-271 73-114 (184)
284 2q6t_A DNAB replication FORK h 96.7 0.0032 1.1E-07 60.3 7.9 37 96-132 189-225 (444)
285 1zak_A Adenylate kinase; ATP:A 96.7 0.0008 2.7E-08 57.9 3.4 27 106-132 4-30 (222)
286 2pt5_A Shikimate kinase, SK; a 96.7 0.0011 3.6E-08 54.1 3.9 24 109-132 2-25 (168)
287 3exa_A TRNA delta(2)-isopenten 96.7 0.0017 5.9E-08 59.5 5.5 26 107-132 3-28 (322)
288 3dl0_A Adenylate kinase; phosp 96.7 0.001 3.5E-08 56.8 3.6 24 109-132 2-25 (216)
289 3tlx_A Adenylate kinase 2; str 96.7 0.0013 4.5E-08 57.7 4.3 28 105-132 27-54 (243)
290 3crm_A TRNA delta(2)-isopenten 96.6 0.0022 7.7E-08 58.9 5.9 25 108-132 6-30 (323)
291 2ged_A SR-beta, signal recogni 96.6 0.0011 3.6E-08 55.1 3.4 26 106-131 47-72 (193)
292 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0011 3.8E-08 58.7 3.7 27 106-132 3-29 (260)
293 3umf_A Adenylate kinase; rossm 96.6 0.0014 4.9E-08 56.8 4.3 30 103-132 25-54 (217)
294 3llm_A ATP-dependent RNA helic 96.6 0.00076 2.6E-08 58.7 2.5 28 103-130 72-99 (235)
295 2w58_A DNAI, primosome compone 96.6 0.0017 5.9E-08 54.7 4.6 25 108-132 55-79 (202)
296 1z2a_A RAS-related protein RAB 96.6 0.0013 4.3E-08 53.0 3.3 23 109-131 7-29 (168)
297 3foz_A TRNA delta(2)-isopenten 96.6 0.0034 1.2E-07 57.4 6.5 26 107-132 10-35 (316)
298 1v5w_A DMC1, meiotic recombina 96.6 0.0015 5E-08 60.5 4.1 29 103-131 118-146 (343)
299 3a8t_A Adenylate isopentenyltr 96.5 0.0027 9.2E-08 58.7 5.7 27 106-132 39-65 (339)
300 3bos_A Putative DNA replicatio 96.5 0.0017 5.8E-08 55.6 4.1 27 106-132 51-77 (242)
301 2dyk_A GTP-binding protein; GT 96.5 0.0014 4.8E-08 52.3 3.4 23 109-131 3-25 (161)
302 2xb4_A Adenylate kinase; ATP-b 96.5 0.0016 5.4E-08 56.3 3.8 24 109-132 2-25 (223)
303 1kao_A RAP2A; GTP-binding prot 96.5 0.0014 4.9E-08 52.4 3.4 23 109-131 5-27 (167)
304 2ce2_X GTPase HRAS; signaling 96.5 0.0013 4.4E-08 52.5 3.0 23 109-131 5-27 (166)
305 1u8z_A RAS-related protein RAL 96.5 0.0015 5E-08 52.4 3.3 23 109-131 6-28 (168)
306 1fnn_A CDC6P, cell division co 96.5 0.0019 6.5E-08 59.7 4.5 28 105-132 40-69 (389)
307 1njg_A DNA polymerase III subu 96.5 0.00074 2.5E-08 57.5 1.5 37 96-132 31-70 (250)
308 1z0j_A RAB-22, RAS-related pro 96.5 0.0016 5.3E-08 52.5 3.4 23 109-131 8-30 (170)
309 4edh_A DTMP kinase, thymidylat 96.5 0.0019 6.5E-08 55.7 4.1 28 105-132 4-31 (213)
310 2qby_A CDC6 homolog 1, cell di 96.5 0.0014 4.7E-08 60.3 3.4 28 105-132 43-70 (386)
311 3eph_A TRNA isopentenyltransfe 96.5 0.0037 1.3E-07 59.2 6.3 25 108-132 3-27 (409)
312 1z08_A RAS-related protein RAB 96.5 0.0016 5.6E-08 52.5 3.4 23 109-131 8-30 (170)
313 1ek0_A Protein (GTP-binding pr 96.5 0.0016 5.6E-08 52.3 3.3 23 109-131 5-27 (170)
314 1ky3_A GTP-binding protein YPT 96.4 0.0017 5.7E-08 53.0 3.4 23 109-131 10-32 (182)
315 3be4_A Adenylate kinase; malar 96.4 0.0017 5.8E-08 55.7 3.5 27 106-132 4-30 (217)
316 1c1y_A RAS-related protein RAP 96.4 0.0017 5.8E-08 52.1 3.3 22 109-130 5-26 (167)
317 1wms_A RAB-9, RAB9, RAS-relate 96.4 0.0017 5.9E-08 52.8 3.4 23 109-131 9-31 (177)
318 3b1v_A Ferrous iron uptake tra 96.4 0.0013 4.5E-08 58.9 2.8 24 108-131 4-27 (272)
319 1sxj_D Activator 1 41 kDa subu 96.4 0.001 3.6E-08 60.8 2.2 37 96-132 45-83 (353)
320 1g16_A RAS-related protein SEC 96.4 0.0015 5.3E-08 52.5 3.0 23 109-131 5-27 (170)
321 2erx_A GTP-binding protein DI- 96.4 0.0015 5E-08 52.7 2.8 22 109-130 5-26 (172)
322 3v9p_A DTMP kinase, thymidylat 96.4 0.0017 5.8E-08 56.7 3.4 29 104-132 22-50 (227)
323 2lkc_A Translation initiation 96.4 0.0019 6.6E-08 52.6 3.5 27 105-131 6-32 (178)
324 3b9p_A CG5977-PA, isoform A; A 96.4 0.0021 7.2E-08 57.6 4.0 27 106-132 53-79 (297)
325 2nzj_A GTP-binding protein REM 96.4 0.0014 4.7E-08 53.2 2.6 23 109-131 6-28 (175)
326 2fn4_A P23, RAS-related protei 96.4 0.0017 5.9E-08 52.8 3.1 22 109-130 11-32 (181)
327 2h92_A Cytidylate kinase; ross 96.4 0.0019 6.4E-08 55.2 3.3 26 107-132 3-28 (219)
328 1ak2_A Adenylate kinase isoenz 96.4 0.0026 9E-08 55.1 4.3 28 105-132 14-41 (233)
329 1r2q_A RAS-related protein RAB 96.4 0.002 7E-08 51.7 3.3 22 109-130 8-29 (170)
330 2z43_A DNA repair and recombin 96.3 0.0027 9.3E-08 58.1 4.5 29 103-131 103-131 (324)
331 4dsu_A GTPase KRAS, isoform 2B 96.3 0.002 7E-08 52.8 3.4 23 109-131 6-28 (189)
332 2oil_A CATX-8, RAS-related pro 96.3 0.002 7E-08 53.5 3.3 23 109-131 27-49 (193)
333 1sky_E F1-ATPase, F1-ATP synth 96.3 0.0016 5.6E-08 62.8 3.1 36 96-132 141-176 (473)
334 2wsm_A Hydrogenase expression/ 96.3 0.0046 1.6E-07 52.6 5.6 27 106-132 29-55 (221)
335 1jbk_A CLPB protein; beta barr 96.3 0.0029 9.9E-08 51.7 4.2 28 105-132 41-68 (195)
336 3clv_A RAB5 protein, putative; 96.3 0.0021 7.1E-08 53.2 3.4 24 108-131 8-31 (208)
337 1e4v_A Adenylate kinase; trans 96.3 0.0022 7.4E-08 54.8 3.5 24 109-132 2-25 (214)
338 3q85_A GTP-binding protein REM 96.3 0.0016 5.4E-08 52.6 2.5 23 109-131 4-26 (169)
339 3bc1_A RAS-related protein RAB 96.3 0.0021 7.3E-08 52.8 3.3 23 109-131 13-35 (195)
340 3lv8_A DTMP kinase, thymidylat 96.3 0.0024 8.3E-08 56.0 3.8 28 105-132 25-52 (236)
341 1ko7_A HPR kinase/phosphatase; 96.3 0.0023 8E-08 58.5 3.7 33 96-129 134-166 (314)
342 3q72_A GTP-binding protein RAD 96.3 0.0012 3.9E-08 53.3 1.5 23 109-131 4-26 (166)
343 1r8s_A ADP-ribosylation factor 96.3 0.0024 8.1E-08 51.3 3.3 22 110-131 3-24 (164)
344 1svi_A GTP-binding protein YSX 96.3 0.0016 5.4E-08 54.1 2.3 24 107-130 23-46 (195)
345 3h4m_A Proteasome-activating n 96.3 0.0026 8.8E-08 56.6 3.8 29 104-132 48-76 (285)
346 3t1o_A Gliding protein MGLA; G 96.3 0.0024 8.1E-08 52.8 3.3 24 109-132 16-39 (198)
347 3lxw_A GTPase IMAP family memb 96.3 0.0019 6.4E-08 56.8 2.8 24 108-131 22-45 (247)
348 2a9k_A RAS-related protein RAL 96.3 0.0024 8.3E-08 52.2 3.3 23 109-131 20-42 (187)
349 1fzq_A ADP-ribosylation factor 96.3 0.0012 4.2E-08 54.6 1.5 24 107-130 16-39 (181)
350 3con_A GTPase NRAS; structural 96.3 0.0024 8.3E-08 52.8 3.3 23 109-131 23-45 (190)
351 3pqc_A Probable GTP-binding pr 96.2 0.0017 5.7E-08 53.7 2.3 23 109-131 25-47 (195)
352 4tmk_A Protein (thymidylate ki 96.2 0.0028 9.6E-08 54.7 3.8 27 106-132 2-28 (213)
353 3tw8_B RAS-related protein RAB 96.2 0.0015 5E-08 53.3 1.9 22 109-130 11-32 (181)
354 1z0f_A RAB14, member RAS oncog 96.2 0.0025 8.5E-08 51.7 3.3 23 109-131 17-39 (179)
355 2qmh_A HPR kinase/phosphorylas 96.2 0.0028 9.4E-08 54.3 3.6 34 96-130 24-57 (205)
356 2g6b_A RAS-related protein RAB 96.2 0.0025 8.6E-08 51.9 3.3 23 109-131 12-34 (180)
357 1ltq_A Polynucleotide kinase; 96.2 0.0024 8.2E-08 57.3 3.4 23 108-130 3-25 (301)
358 2y8e_A RAB-protein 6, GH09086P 96.2 0.0023 7.8E-08 52.0 3.0 23 109-131 16-38 (179)
359 2dby_A GTP-binding protein; GD 96.2 0.0023 7.7E-08 60.0 3.3 23 109-131 3-25 (368)
360 1upt_A ARL1, ADP-ribosylation 96.2 0.0033 1.1E-07 50.6 3.9 24 107-130 7-30 (171)
361 1ypw_A Transitional endoplasmi 96.2 0.0013 4.6E-08 67.7 1.9 33 100-132 504-536 (806)
362 3ihw_A Centg3; RAS, centaurin, 96.2 0.0026 9E-08 52.8 3.4 22 109-130 22-43 (184)
363 2hxs_A RAB-26, RAS-related pro 96.2 0.0024 8.1E-08 52.0 3.0 23 109-131 8-30 (178)
364 2e87_A Hypothetical protein PH 96.2 0.0018 6.2E-08 60.1 2.5 27 105-131 165-191 (357)
365 2efe_B Small GTP-binding prote 96.2 0.0028 9.6E-08 51.7 3.4 23 109-131 14-36 (181)
366 1nrj_B SR-beta, signal recogni 96.2 0.0027 9.2E-08 53.9 3.3 24 108-131 13-36 (218)
367 2cxx_A Probable GTP-binding pr 96.2 0.0018 6.1E-08 53.3 2.1 23 109-131 3-25 (190)
368 3dm5_A SRP54, signal recogniti 96.2 0.0063 2.1E-07 58.3 6.2 27 106-132 99-125 (443)
369 1wf3_A GTP-binding protein; GT 96.2 0.0023 8E-08 58.1 3.0 23 109-131 9-31 (301)
370 3zvl_A Bifunctional polynucleo 96.2 0.0028 9.6E-08 60.2 3.7 30 102-131 253-282 (416)
371 3tmk_A Thymidylate kinase; pho 96.2 0.0034 1.2E-07 54.3 3.9 28 105-132 3-30 (216)
372 2bov_A RAla, RAS-related prote 96.2 0.0028 9.7E-08 52.9 3.3 23 109-131 16-38 (206)
373 1vg8_A RAS-related protein RAB 96.2 0.0029 1E-07 52.9 3.4 23 109-131 10-32 (207)
374 2bme_A RAB4A, RAS-related prot 96.2 0.0026 9E-08 52.2 3.0 23 109-131 12-34 (186)
375 3sr0_A Adenylate kinase; phosp 96.1 0.0034 1.2E-07 53.9 3.8 24 109-132 2-25 (206)
376 2gf9_A RAS-related protein RAB 96.1 0.003 1E-07 52.3 3.3 23 109-131 24-46 (189)
377 3iev_A GTP-binding protein ERA 96.1 0.0025 8.5E-08 58.0 3.0 24 108-131 11-34 (308)
378 3ld9_A DTMP kinase, thymidylat 96.1 0.004 1.4E-07 54.2 4.2 28 105-132 19-46 (223)
379 3kkq_A RAS-related protein M-R 96.1 0.0031 1.1E-07 51.7 3.3 23 109-131 20-42 (183)
380 3tkl_A RAS-related protein RAB 96.1 0.0031 1E-07 52.3 3.3 23 109-131 18-40 (196)
381 1m7b_A RND3/RHOE small GTP-bin 96.1 0.0028 9.6E-08 52.3 3.0 23 109-131 9-31 (184)
382 2gf0_A GTP-binding protein DI- 96.1 0.0029 1E-07 52.5 3.1 23 108-130 9-31 (199)
383 2ocp_A DGK, deoxyguanosine kin 96.1 0.0034 1.1E-07 54.7 3.6 27 106-132 1-27 (241)
384 1mh1_A RAC1; GTP-binding, GTPa 96.1 0.0033 1.1E-07 51.4 3.3 22 109-130 7-28 (186)
385 2fg5_A RAB-22B, RAS-related pr 96.1 0.003 1E-07 52.6 3.1 23 109-131 25-47 (192)
386 3iby_A Ferrous iron transport 96.1 0.0024 8.1E-08 56.6 2.5 23 109-131 3-25 (256)
387 1l8q_A Chromosomal replication 96.1 0.003 1E-07 57.4 3.3 27 106-132 36-62 (324)
388 2r62_A Cell division protease 96.0 0.0016 5.6E-08 57.4 1.3 34 97-132 36-69 (268)
389 1z06_A RAS-related protein RAB 96.0 0.0037 1.3E-07 51.8 3.4 23 109-131 22-44 (189)
390 2cjw_A GTP-binding protein GEM 96.0 0.0036 1.2E-07 52.4 3.3 23 109-131 8-30 (192)
391 3t5g_A GTP-binding protein RHE 96.0 0.0033 1.1E-07 51.4 3.0 22 109-130 8-29 (181)
392 2p65_A Hypothetical protein PF 96.0 0.0038 1.3E-07 51.0 3.4 28 105-132 41-68 (187)
393 2a5j_A RAS-related protein RAB 96.0 0.0037 1.3E-07 51.9 3.3 23 109-131 23-45 (191)
394 3oes_A GTPase rhebl1; small GT 96.0 0.0033 1.1E-07 52.7 3.0 24 108-131 25-48 (201)
395 3dz8_A RAS-related protein RAB 96.0 0.0034 1.2E-07 52.1 3.0 23 109-131 25-47 (191)
396 2qz4_A Paraplegin; AAA+, SPG7, 96.0 0.0052 1.8E-07 53.6 4.3 28 105-132 37-64 (262)
397 2xtp_A GTPase IMAP family memb 96.0 0.0028 9.5E-08 55.7 2.6 24 108-131 23-46 (260)
398 3bwd_D RAC-like GTP-binding pr 96.0 0.0049 1.7E-07 50.3 3.8 23 108-130 9-31 (182)
399 1zd9_A ADP-ribosylation factor 96.0 0.0039 1.3E-07 51.6 3.3 24 108-131 23-46 (188)
400 3reg_A RHO-like small GTPase; 96.0 0.004 1.4E-07 51.8 3.3 23 109-131 25-47 (194)
401 2ew1_A RAS-related protein RAB 96.0 0.0035 1.2E-07 53.0 3.0 23 109-131 28-50 (201)
402 2atv_A RERG, RAS-like estrogen 96.0 0.004 1.4E-07 51.9 3.4 24 108-131 29-52 (196)
403 3a1s_A Iron(II) transport prot 96.0 0.0032 1.1E-07 55.8 2.8 23 109-131 7-29 (258)
404 1x3s_A RAS-related protein RAB 96.0 0.0041 1.4E-07 51.4 3.3 24 108-131 16-39 (195)
405 2p5s_A RAS and EF-hand domain 96.0 0.0041 1.4E-07 52.0 3.3 24 108-131 29-52 (199)
406 2fv8_A H6, RHO-related GTP-bin 95.9 0.0039 1.3E-07 52.6 3.2 34 98-131 16-49 (207)
407 2v3c_C SRP54, signal recogniti 95.9 0.0032 1.1E-07 60.2 2.9 31 102-132 92-124 (432)
408 2bcg_Y Protein YP2, GTP-bindin 95.9 0.0038 1.3E-07 52.4 3.0 23 109-131 10-32 (206)
409 3cph_A RAS-related protein SEC 95.9 0.0042 1.4E-07 52.2 3.3 26 106-131 19-44 (213)
410 1zbd_A Rabphilin-3A; G protein 95.9 0.0036 1.2E-07 52.4 2.8 23 109-131 10-32 (203)
411 1ksh_A ARF-like protein 2; sma 95.9 0.0031 1E-07 51.9 2.3 25 106-130 17-41 (186)
412 1moz_A ARL1, ADP-ribosylation 95.9 0.0032 1.1E-07 51.5 2.3 25 105-129 16-40 (183)
413 2iwr_A Centaurin gamma 1; ANK 95.9 0.0035 1.2E-07 51.1 2.5 24 108-131 8-31 (178)
414 1u94_A RECA protein, recombina 95.9 0.0052 1.8E-07 57.2 3.9 30 103-132 59-88 (356)
415 3c5c_A RAS-like protein 12; GD 95.9 0.0049 1.7E-07 51.2 3.4 23 109-131 23-45 (187)
416 3i8s_A Ferrous iron transport 95.8 0.0035 1.2E-07 56.0 2.6 24 108-131 4-27 (274)
417 3t5d_A Septin-7; GTP-binding p 95.8 0.0026 8.8E-08 56.7 1.7 22 109-130 10-31 (274)
418 3cbq_A GTP-binding protein REM 95.8 0.0023 7.8E-08 53.8 1.3 23 109-131 25-47 (195)
419 1gwn_A RHO-related GTP-binding 95.8 0.0044 1.5E-07 52.5 3.0 23 109-131 30-52 (205)
420 2z4s_A Chromosomal replication 95.8 0.0046 1.6E-07 59.1 3.5 26 107-132 130-155 (440)
421 1zj6_A ADP-ribosylation factor 95.8 0.0038 1.3E-07 51.5 2.5 25 106-130 15-39 (187)
422 2i1q_A DNA repair and recombin 95.8 0.0046 1.6E-07 56.3 3.2 28 103-130 94-121 (322)
423 2fh5_B SR-beta, signal recogni 95.8 0.0052 1.8E-07 51.9 3.3 24 108-131 8-31 (214)
424 1p5z_B DCK, deoxycytidine kina 95.8 0.0029 9.9E-08 55.9 1.7 28 105-132 22-49 (263)
425 2o52_A RAS-related protein RAB 95.8 0.0037 1.3E-07 52.5 2.3 22 109-130 27-48 (200)
426 2zts_A Putative uncharacterize 95.8 0.0091 3.1E-07 51.5 4.8 26 103-128 26-51 (251)
427 1jwy_B Dynamin A GTPase domain 95.7 0.0042 1.4E-07 56.0 2.7 23 109-131 26-48 (315)
428 2h17_A ADP-ribosylation factor 95.7 0.0036 1.2E-07 51.5 2.0 22 109-130 23-44 (181)
429 4hlc_A DTMP kinase, thymidylat 95.7 0.007 2.4E-07 51.8 4.0 26 107-132 2-27 (205)
430 2hf9_A Probable hydrogenase ni 95.7 0.0056 1.9E-07 52.2 3.3 27 106-132 37-63 (226)
431 2gco_A H9, RHO-related GTP-bin 95.7 0.0053 1.8E-07 51.5 3.0 23 109-131 27-49 (201)
432 2il1_A RAB12; G-protein, GDP, 95.7 0.0034 1.2E-07 52.3 1.8 23 109-131 28-50 (192)
433 4dhe_A Probable GTP-binding pr 95.7 0.002 6.9E-08 54.8 0.3 25 107-131 29-53 (223)
434 2qu8_A Putative nucleolar GTP- 95.7 0.0041 1.4E-07 53.4 2.3 24 107-130 29-52 (228)
435 2f7s_A C25KG, RAS-related prot 95.7 0.0047 1.6E-07 52.3 2.6 22 109-130 27-48 (217)
436 2fu5_C RAS-related protein RAB 95.7 0.0034 1.2E-07 51.4 1.7 23 109-131 10-32 (183)
437 2atx_A Small GTP binding prote 95.7 0.0058 2E-07 50.7 3.1 23 109-131 20-42 (194)
438 4bas_A ADP-ribosylation factor 95.6 0.0039 1.3E-07 51.7 1.9 24 108-131 18-41 (199)
439 2h57_A ADP-ribosylation factor 95.6 0.0029 9.9E-08 52.4 1.1 24 108-131 22-45 (190)
440 2q3h_A RAS homolog gene family 95.6 0.005 1.7E-07 51.4 2.5 24 107-130 20-43 (201)
441 3pvs_A Replication-associated 95.6 0.0026 9E-08 61.1 0.8 35 98-132 39-75 (447)
442 3p32_A Probable GTPase RV1496/ 95.6 0.0087 3E-07 55.5 4.3 28 105-132 77-104 (355)
443 2j1l_A RHO-related GTP-binding 95.6 0.0049 1.7E-07 52.4 2.3 22 109-130 36-57 (214)
444 2hup_A RAS-related protein RAB 95.5 0.0069 2.3E-07 50.9 3.1 23 109-131 31-53 (201)
445 3llu_A RAS-related GTP-binding 95.5 0.0053 1.8E-07 51.3 2.3 23 109-131 22-44 (196)
446 3gmt_A Adenylate kinase; ssgci 95.5 0.0085 2.9E-07 52.4 3.6 25 108-132 9-33 (230)
447 3cpj_B GTP-binding protein YPT 95.5 0.0079 2.7E-07 51.3 3.4 23 109-131 15-37 (223)
448 3tqf_A HPR(Ser) kinase; transf 95.5 0.0083 2.8E-07 50.2 3.3 32 97-129 7-38 (181)
449 3def_A T7I23.11 protein; chlor 95.5 0.0058 2E-07 54.0 2.6 24 108-131 37-60 (262)
450 2aka_B Dynamin-1; fusion prote 95.5 0.0054 1.8E-07 54.8 2.3 24 108-131 27-50 (299)
451 4gzl_A RAS-related C3 botulinu 95.4 0.0076 2.6E-07 50.8 3.0 23 108-130 31-53 (204)
452 2orw_A Thymidine kinase; TMTK, 95.4 0.01 3.5E-07 49.7 3.8 26 106-131 2-28 (184)
453 3t15_A Ribulose bisphosphate c 95.4 0.01 3.5E-07 53.4 4.0 29 104-132 33-61 (293)
454 3syl_A Protein CBBX; photosynt 95.4 0.01 3.5E-07 53.2 4.0 28 105-132 65-92 (309)
455 3q3j_B RHO-related GTP-binding 95.4 0.009 3.1E-07 50.8 3.3 23 108-130 28-50 (214)
456 1h65_A Chloroplast outer envel 95.4 0.0066 2.3E-07 53.8 2.5 24 108-131 40-63 (270)
457 2chg_A Replication factor C sm 95.4 0.01 3.5E-07 49.6 3.6 24 109-132 40-63 (226)
458 2g3y_A GTP-binding protein GEM 95.3 0.0072 2.4E-07 51.8 2.6 22 109-130 39-60 (211)
459 2yc2_C IFT27, small RAB-relate 95.3 0.0034 1.2E-07 52.4 0.5 23 108-130 21-43 (208)
460 3cnl_A YLQF, putative uncharac 95.3 0.0074 2.5E-07 53.7 2.8 25 108-132 100-124 (262)
461 2v1u_A Cell division control p 95.3 0.0083 2.8E-07 55.1 3.2 28 105-132 42-69 (387)
462 3n70_A Transport activator; si 95.3 0.01 3.6E-07 47.4 3.4 27 105-131 22-48 (145)
463 2j0v_A RAC-like GTP-binding pr 95.3 0.0087 3E-07 50.4 3.0 24 108-131 10-33 (212)
464 2b6h_A ADP-ribosylation factor 95.3 0.0082 2.8E-07 50.0 2.7 24 106-129 28-51 (192)
465 1tue_A Replication protein E1; 95.2 0.011 3.9E-07 50.7 3.4 30 103-132 54-83 (212)
466 4djt_A GTP-binding nuclear pro 95.2 0.0034 1.1E-07 53.3 -0.0 22 109-130 13-34 (218)
467 1xwi_A SKD1 protein; VPS4B, AA 95.1 0.015 5E-07 53.2 4.1 27 105-131 43-69 (322)
468 2xau_A PRE-mRNA-splicing facto 95.1 0.0088 3E-07 61.3 2.8 62 205-266 187-257 (773)
469 2j37_W Signal recognition part 95.1 0.025 8.6E-07 55.0 5.9 28 105-132 99-126 (504)
470 4dcu_A GTP-binding protein ENG 95.1 0.0064 2.2E-07 58.3 1.7 23 109-131 25-47 (456)
471 1ofh_A ATP-dependent HSL prote 95.0 0.014 4.9E-07 51.9 3.7 26 107-132 50-75 (310)
472 1yrb_A ATP(GTP)binding protein 95.0 0.037 1.3E-06 48.2 6.2 28 104-131 11-38 (262)
473 1m8p_A Sulfate adenylyltransfe 95.0 0.016 5.5E-07 57.4 4.2 28 105-132 394-421 (573)
474 2r8r_A Sensor protein; KDPD, P 95.0 0.22 7.7E-06 43.2 11.0 26 106-131 4-30 (228)
475 2x77_A ADP-ribosylation factor 95.0 0.0081 2.8E-07 49.5 1.7 24 106-129 21-44 (189)
476 1g8f_A Sulfate adenylyltransfe 94.9 0.014 5E-07 56.8 3.7 29 104-132 392-420 (511)
477 3hws_A ATP-dependent CLP prote 94.9 0.014 4.8E-07 54.0 3.5 27 106-132 50-76 (363)
478 2r44_A Uncharacterized protein 94.9 0.0045 1.5E-07 56.4 -0.0 37 96-132 35-71 (331)
479 1x6v_B Bifunctional 3'-phospho 94.9 0.017 5.8E-07 57.7 4.1 26 106-131 51-76 (630)
480 3uk6_A RUVB-like 2; hexameric 94.9 0.017 5.7E-07 53.1 3.8 28 105-132 68-95 (368)
481 1d2n_A N-ethylmaleimide-sensit 94.8 0.017 5.7E-07 51.0 3.5 28 105-132 62-89 (272)
482 1xp8_A RECA protein, recombina 94.8 0.017 5.7E-07 54.0 3.6 29 103-131 70-98 (366)
483 1puj_A YLQF, conserved hypothe 94.8 0.015 5E-07 52.3 3.1 26 106-131 119-144 (282)
484 3gj0_A GTP-binding nuclear pro 94.8 0.011 3.6E-07 50.3 2.0 23 109-131 17-40 (221)
485 2qby_B CDC6 homolog 3, cell di 94.8 0.019 6.5E-07 52.9 4.0 27 106-132 44-70 (384)
486 3d8b_A Fidgetin-like protein 1 94.8 0.021 7E-07 52.9 4.1 28 105-132 115-142 (357)
487 2qgz_A Helicase loader, putati 94.7 0.022 7.4E-07 51.8 4.0 25 107-131 152-176 (308)
488 3eie_A Vacuolar protein sortin 94.7 0.022 7.7E-07 51.7 4.1 28 105-132 49-76 (322)
489 2xxa_A Signal recognition part 94.7 0.045 1.5E-06 52.2 6.4 28 105-132 98-125 (433)
490 3th5_A RAS-related C3 botulinu 93.7 0.0058 2E-07 51.2 0.0 23 108-130 31-53 (204)
491 2vhj_A Ntpase P4, P4; non- hyd 94.6 0.016 5.6E-07 53.2 3.0 29 102-130 118-146 (331)
492 3l0o_A Transcription terminati 94.6 0.023 7.9E-07 53.5 4.1 33 100-132 168-200 (427)
493 1wxq_A GTP-binding protein; st 94.6 0.013 4.4E-07 55.4 2.3 23 109-131 2-24 (397)
494 2qen_A Walker-type ATPase; unk 94.6 0.0096 3.3E-07 53.9 1.3 25 106-130 30-54 (350)
495 2axn_A 6-phosphofructo-2-kinas 94.6 0.024 8.2E-07 55.4 4.2 28 105-132 33-60 (520)
496 4b4t_K 26S protease regulatory 94.6 0.025 8.5E-07 53.9 4.2 29 104-132 203-231 (428)
497 1jr3_A DNA polymerase III subu 94.6 0.0087 3E-07 55.0 1.0 24 109-132 40-63 (373)
498 3geh_A MNME, tRNA modification 94.5 0.014 4.8E-07 56.3 2.4 27 106-132 223-249 (462)
499 4b4t_L 26S protease subunit RP 94.5 0.024 8.2E-07 54.2 4.0 30 103-132 211-240 (437)
500 4b4t_M 26S protease regulatory 94.5 0.025 8.4E-07 54.1 4.0 30 103-132 211-240 (434)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=6.7e-44 Score=335.99 Aligned_cols=204 Identities=15% Similarity=0.121 Sum_probs=173.8
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~----- 149 (313)
++||+++||+|.|++..+...+|+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|++..
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~---p~~G~I~i~G~~i~~~~~~ 98 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTEGSVLVDGQELTTLSES 98 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECSSCCHH
T ss_pred CceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC---CCceEEEECCEECCcCCHH
Confidence 3589999999999754333459999999999999999999999999999999999999 99999999997642
Q ss_pred ------CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhh
Q 021362 150 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 150 ------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~ 221 (313)
+.++|+||++..++ .+||+||+.++....+.+.....+++.++|+.++. ..++++.+|||||||||+||+
T Consensus 99 ~~~~~r~~Ig~v~Q~~~l~~--~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIAr 176 (366)
T 3tui_C 99 ELTKARRQIGMIFQHFNLLS--SRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIAR 176 (366)
T ss_dssp HHHHHHTTEEEECSSCCCCT--TSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHH
T ss_pred HHHHHhCcEEEEeCCCccCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHH
Confidence 35999999965443 48999999998877776655666788999999983 467788899999999999999
Q ss_pred hhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
|++.++++|++|+|+..||+ .+++.|+++.++ .++||||++++.. |++ |++++.|++.++..
T Consensus 177 AL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~ 253 (366)
T 3tui_C 177 ALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 253 (366)
T ss_dssp HTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHS
T ss_pred HHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999 566666666432 4799999999987 665 99999999988753
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=4.3e-44 Score=336.99 Aligned_cols=198 Identities=14% Similarity=0.170 Sum_probs=169.9
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
+|+++||+|.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++.
T Consensus 4 ~l~i~~ls~~y~~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~i~~~~~~~~ 76 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTP----VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ---PDSGEISLSGKTIFSKNTNLP 76 (359)
T ss_dssp CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEESSSCBCC
T ss_pred EEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEECcccccccc
Confidence 699999999998877 9999999999999999999999999999999999999 9999999999653
Q ss_pred --CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhc
Q 021362 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 --~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
.+.++|+||+...++ .+||+||+.+++..++.+.....+++.++++.++ ...++++.+|||||||||+||+|++
T Consensus 77 ~~~r~ig~vfQ~~~l~p--~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~ 154 (359)
T 3fvq_A 77 VRERRLGYLVQEGVLFP--HLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALA 154 (359)
T ss_dssp GGGSCCEEECTTCCCCT--TSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred hhhCCEEEEeCCCcCCC--CCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence 246999999965433 5999999999876666555556678899999998 3467788899999999999999999
Q ss_pred cCceEEEEcCCccccChh----hHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 225 LQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
.++++|++|+|+..||.. +++.|.++.+ ..|+||||++++.. |++ |++++.|+++++..
T Consensus 155 ~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 155 PDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYR 228 (359)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHh
Confidence 999999999999999993 4444444432 24799999999987 665 99999999999864
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=6.8e-44 Score=337.81 Aligned_cols=200 Identities=15% Similarity=0.152 Sum_probs=173.5
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~----- 149 (313)
|.+|+++||+|.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++..
T Consensus 1 M~~l~~~~l~~~yg~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~~~~~~~~ 73 (381)
T 3rlf_A 1 MASVQLQNVTKAWGEVV----VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPPA 73 (381)
T ss_dssp -CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTCCGG
T ss_pred CCEEEEEeEEEEECCEE----EEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC---CCCeEEEECCEECCCCCHH
Confidence 45799999999999877 9999999999999999999999999999999999999 99999999997632
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
+.++||||+...++ .+||+||+.+++..++.++.+..+++.++++.++ ...++++.+|||||||||+||+|++.+
T Consensus 74 ~r~ig~VfQ~~~l~p--~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~ 151 (381)
T 3rlf_A 74 ERGVGMVFQSYALYP--HLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAE 151 (381)
T ss_dssp GSCEEEECTTCCCCT--TSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HCCEEEEecCCcCCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcC
Confidence 45999999965433 5999999999988777666666778899999988 346778889999999999999999999
Q ss_pred ceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 227 HKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 227 ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+++|++|+|+..||. .+++.|+++.++ .|+||||++++.. |++ |++++.|+++++..
T Consensus 152 P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 152 PSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 999999999999998 556666666432 4799999999987 665 99999999999854
No 4
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2e-42 Score=326.53 Aligned_cols=200 Identities=15% Similarity=0.157 Sum_probs=170.2
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
|.+|+++||+|.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++.
T Consensus 1 m~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 73 (362)
T 2it1_A 1 MVEIKLENIVKKFGNFT----ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTELPPK 73 (362)
T ss_dssp CCCEEEEEEEEESSSSE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred CcEEEEEeEEEEECCEE----EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCceEEEECCEECCcCCHh
Confidence 44699999999998766 9999999999999999999999999999999999999 9999999999653
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
.+.++|+||+...++ ++||+||+.+++..++.+.....+++.++++.++. ..++++.+|||||||||+||+|++.+
T Consensus 74 ~r~ig~v~Q~~~l~~--~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~ 151 (362)
T 2it1_A 74 DRNVGLVFQNWALYP--HMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKE 151 (362)
T ss_dssp GTTEEEECTTCCCCT--TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred HCcEEEEecCcccCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcC
Confidence 245999999965433 59999999998776655544445678899999984 45677889999999999999999999
Q ss_pred ceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 227 HKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 227 ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+++|++|+|+..||. .+++.|+++.+ ..|+||||++++.. |++ |++++.|+++++..
T Consensus 152 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 152 PEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp CSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999 45566666543 24799999999976 655 99999999998854
No 5
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=3.1e-42 Score=324.28 Aligned_cols=199 Identities=16% Similarity=0.228 Sum_probs=169.9
Q ss_pred cEEEEccceEEc-cccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 76 PVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 76 ~~l~~~~l~~~y-~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
++|+++||+|.| ++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++.
T Consensus 13 ~~l~~~~l~~~y~g~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 85 (355)
T 1z47_A 13 MTIEFVGVEKIYPGGAR----SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER---PTKGDVWIGGKRVTDLPPQ 85 (355)
T ss_dssp EEEEEEEEEECCTTSTT----CEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTCCGG
T ss_pred ceEEEEEEEEEEcCCCE----EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECCcCChh
Confidence 479999999999 7666 9999999999999999999999999999999999999 9999999999653
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
.+.++|+||+...++ .+||+||+.+++..++.+.....+++.++++.++. ..++++.+|||||||||+||+|++.+
T Consensus 86 ~r~ig~v~Q~~~l~~--~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~ 163 (355)
T 1z47_A 86 KRNVGLVFQNYALFQ--HMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPR 163 (355)
T ss_dssp GSSEEEECGGGCCCT--TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred hCcEEEEecCcccCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 246999999965433 59999999998776655544445678899999883 46778889999999999999999999
Q ss_pred ceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 227 HKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 227 ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+++|++|+|+..||. .+++.|+++.+ ..|+||||++++.. |++ |+++..|+++++..
T Consensus 164 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 235 (355)
T 1z47_A 164 PQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYE 235 (355)
T ss_dssp CSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999 45556666543 24799999999987 655 99999999998854
No 6
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-42 Score=327.20 Aligned_cols=200 Identities=15% Similarity=0.157 Sum_probs=168.1
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
|.+|+++||+|.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++.
T Consensus 1 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 73 (359)
T 2yyz_A 1 MPSIRVVNLKKYFGKVK----AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK---PTSGEIYFDDVLVNDIPPK 73 (359)
T ss_dssp -CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred CcEEEEEEEEEEECCEE----EEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC---CCccEEEECCEECCCCChh
Confidence 44699999999998766 9999999999999999999999999999999999999 9999999999653
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
.+.++|+||+...++ ++||+||+.++...++.+.....+++.++++.++. ..++++.+|||||||||+||+|++.+
T Consensus 74 ~r~ig~v~Q~~~l~~--~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~ 151 (359)
T 2yyz_A 74 YREVGMVFQNYALYP--HMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQ 151 (359)
T ss_dssp GTTEEEECSSCCCCT--TSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred hCcEEEEecCcccCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 245999999965433 59999999987654443333345678899999883 46778889999999999999999999
Q ss_pred ceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 227 HKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 227 ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+++|++|+|+..||. .+++.|+++.+ ..++||||++++.. |++ |+++..|+++++..
T Consensus 152 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 152 PKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999 45556666543 24799999999976 655 99999999999854
No 7
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.8e-42 Score=326.65 Aligned_cols=200 Identities=14% Similarity=0.147 Sum_probs=165.0
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
|.+|+++||+|.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++.
T Consensus 9 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 81 (372)
T 1v43_A 9 MVEVKLENLTKRFGNFT----AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPK 81 (372)
T ss_dssp CCCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred eeeEEEEEEEEEECCEE----EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCceEEEECCEECCCCChh
Confidence 56799999999998766 9999999999999999999999999999999999999 9999999999653
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
.+.++|+||+...++ ++||+||+.+++..++.+.....+++.++++.++. ..++++.+|||||||||+||+|++.+
T Consensus 82 ~r~ig~v~Q~~~l~~--~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~ 159 (372)
T 1v43_A 82 DRNISMVFQSYAVWP--HMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVE 159 (372)
T ss_dssp GGTEEEEEC--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTC
T ss_pred hCcEEEEecCcccCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 245999999955433 59999999987554444433345678899999883 46778889999999999999999999
Q ss_pred ceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 227 HKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 227 ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+++|++|+|+..||. .+++.|+++.++ .|+||||++++.. |++ |+++..|+++++..
T Consensus 160 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 160 PDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999 455566665432 4799999999976 655 99999999998854
No 8
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=7.6e-43 Score=318.51 Aligned_cols=202 Identities=17% Similarity=0.126 Sum_probs=170.2
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
++|+++||++.|++.. .+|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++..
T Consensus 6 ~~l~i~~ls~~y~~~~---~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~---p~~G~I~~~G~~i~~~~~~~ 79 (275)
T 3gfo_A 6 YILKVEELNYNYSDGT---HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK---PSSGRILFDNKPIDYSRKGI 79 (275)
T ss_dssp EEEEEEEEEEECTTSC---EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCCSHHHH
T ss_pred cEEEEEEEEEEECCCC---eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeEEEECCEECCcccccH
Confidence 4799999999997531 28999999999999999999999999999999999999 99999999997652
Q ss_pred ----CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhh
Q 021362 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 150 ----~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al 223 (313)
+.++|+||++..... .+||+||+.++....+.+.....+++.++++.++. ..++++.+|||||||||+||+|+
T Consensus 80 ~~~~~~ig~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL 158 (275)
T 3gfo_A 80 MKLRESIGIVFQDPDNQLF-SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVL 158 (275)
T ss_dssp HHHHHSEEEECSSGGGTCC-SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH
T ss_pred HHHhCcEEEEEcCcccccc-cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHH
Confidence 359999998632222 37999999998776665555556778899999883 45677889999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhc-c---ceEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMF-D---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~-~---~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
+.++++|++|+|+..||+ .+++.|+++. + ..|+||||++++.. |++ |++++.|+++++...
T Consensus 159 ~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 159 VMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999 5666666665 2 24799999999876 655 999999999998643
No 9
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2.8e-42 Score=326.92 Aligned_cols=200 Identities=14% Similarity=0.103 Sum_probs=170.0
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
|.+|+++||+|.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++.
T Consensus 1 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~ 73 (372)
T 1g29_1 1 MAGVRLVDVWKVFGEVT----AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGDKLVADPEKG 73 (372)
T ss_dssp CEEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEEEGGGT
T ss_pred CCEEEEEeEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC---CCccEEEECCEECcccccc
Confidence 45799999999998766 9999999999999999999999999999999999999 9999999998542
Q ss_pred ------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhh
Q 021362 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 149 ------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia 220 (313)
.+.++||||+...++ ++||+||+.++...++.+.....+++.++++.++. ..++++.+|||||||||+||
T Consensus 74 ~~~~~~~r~ig~v~Q~~~l~~--~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalA 151 (372)
T 1g29_1 74 IFVPPKDRDIAMVFQSYALYP--HMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALG 151 (372)
T ss_dssp EECCGGGSSEEEECSCCCCCT--TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred ccCCHhHCCEEEEeCCCccCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHH
Confidence 235999999955433 59999999998776655544445678899999883 46778889999999999999
Q ss_pred hhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 221 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 221 ~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+|++.++++|++|+|+..||. .+++.|+++.+ ..|+||||++++.. |++ |+++..|+++++..
T Consensus 152 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 152 RAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp HHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 999999999999999999999 45556666543 24799999999986 655 99999999998864
No 10
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=3.7e-42 Score=312.19 Aligned_cols=199 Identities=16% Similarity=0.200 Sum_probs=165.6
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
++|+++||++.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++..
T Consensus 23 ~~l~i~~l~~~y~~~~----vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~~~~~~ 95 (263)
T 2olj_A 23 QMIDVHQLKKSFGSLE----VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED---FDEGEIIIDGINLKAKDTNL 95 (263)
T ss_dssp CSEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEESSSTTCCH
T ss_pred heEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC---CCCcEEEECCEECCCccccH
Confidence 3799999999998766 9999999999999999999999999999999999999 99999999996542
Q ss_pred ----CeEEEEecCCCCCCcccCCcccChHHHH-HhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhh
Q 021362 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 150 ----~~i~~v~qd~~~~~~~~ltv~e~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~a 222 (313)
+.++|++|++..++ .+|++||+.++. ...+.+.....+++.++++.++. ..++++.+|||||||||+||+|
T Consensus 96 ~~~~~~i~~v~Q~~~l~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAra 173 (263)
T 2olj_A 96 NKVREEVGMVFQRFNLFP--HMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARA 173 (263)
T ss_dssp HHHHHHEEEECSSCCCCT--TSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred HHHhCcEEEEeCCCcCCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 24999999965433 589999999864 33443323334567889998884 4567788999999999999999
Q ss_pred hccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++.++++|++|+|+..||. .+++.|+++.++ .+++|||++++.. |++ |++++.|+++++..
T Consensus 174 L~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 174 LAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248 (263)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999 556666665432 4799999999876 555 89999999988754
No 11
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.4e-42 Score=311.31 Aligned_cols=202 Identities=13% Similarity=0.087 Sum_probs=167.0
Q ss_pred CCccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC---
Q 021362 73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--- 149 (313)
Q Consensus 73 ~~m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~--- 149 (313)
+.|++|+++||++.|++.. +|+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++..
T Consensus 11 ~~~~~l~i~~l~~~y~~~~----vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~ 83 (256)
T 1vpl_A 11 HHMGAVVVKDLRKRIGKKE----ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTVFGKNVVEEP 83 (256)
T ss_dssp ---CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTCH
T ss_pred ccCCeEEEEEEEEEECCEE----EEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCccH
Confidence 4588999999999998766 9999999999999999999999999999999999999 99999999997642
Q ss_pred ----CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhh
Q 021362 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 150 ----~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al 223 (313)
+.++|++|++..++ .+|++||+.+....++.+.....+++.++++.++. ..++++.+||||||||++||+|+
T Consensus 84 ~~~~~~i~~v~q~~~l~~--~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL 161 (256)
T 1vpl_A 84 HEVRKLISYLPEEAGAYR--NMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARAL 161 (256)
T ss_dssp HHHHTTEEEECTTCCCCT--TSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHH
T ss_pred HHHhhcEEEEcCCCCCCC--CCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 35999999965443 48999999987655544332234567888998884 34667789999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+.++++|++|+|+..||. .+++.|+++.++ ++++|||++++.. |++ |++++.|+++++..
T Consensus 162 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 162 MVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999 556666665432 4799999999876 555 89999999888754
No 12
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1e-41 Score=309.82 Aligned_cols=199 Identities=15% Similarity=0.145 Sum_probs=168.7
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~----- 149 (313)
+++|+++||++.|++.. +|+|+||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|++..
T Consensus 9 ~~~l~~~~l~~~~~~~~----vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~~~~ 81 (266)
T 4g1u_C 9 VALLEASHLHYHVQQQA----LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS---PSHGECHLLGQNLNSWQPK 81 (266)
T ss_dssp CCEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC---CSSCEEEETTEETTTSCHH
T ss_pred cceEEEEeEEEEeCCee----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCCHH
Confidence 46899999999999877 9999999999999999999999999999999999999 99999999997643
Q ss_pred ---CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhc
Q 021362 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 150 ---~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
+.++|++|++..++ .+||+||+.++...+ ......+++.++++.++. ..++++.+|||||||||+||+|++
T Consensus 82 ~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~ 157 (266)
T 4g1u_C 82 ALARTRAVMRQYSELAF--PFSVSEVIQMGRAPY--GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLA 157 (266)
T ss_dssp HHHHHEEEECSCCCCCS--CCBHHHHHHGGGTTS--CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred HHhheEEEEecCCccCC--CCCHHHHHHhhhhhc--CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 24899999966544 389999998865433 334456778899999984 456677899999999999999999
Q ss_pred c------CceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 225 L------QHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 225 ~------~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
. ++++|++|+|+..||+ .+++.|+++.++ .++||||++++.. |++ |++++.|+++++..
T Consensus 158 ~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 158 QLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp HTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCC
T ss_pred cccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhC
Confidence 9 9999999999999999 566666666432 4699999999986 655 99999999998854
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 238 ~ 238 (266)
T 4g1u_C 238 A 238 (266)
T ss_dssp H
T ss_pred c
Confidence 3
No 13
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=4.6e-42 Score=306.80 Aligned_cols=200 Identities=16% Similarity=0.164 Sum_probs=160.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
||+++||++.|++......+|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~~~~~~ 77 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYIDNIKTNDLDDDEL 77 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEEcccCCHHHH
Confidence 48999999999853222349999999999999999999999999999999999999 99999999997642
Q ss_pred -----CeEEEEecCCCCCCcccCCcccChHHHHHhc---CCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcch
Q 021362 150 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARR---GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 150 -----~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~---~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ 218 (313)
+.++|+||++..++ .+|++||+.++.... +.+.....+++.++++.++.. .++++.+|||||||||+
T Consensus 78 ~~~~~~~i~~v~Q~~~l~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~ 155 (235)
T 3tif_A 78 TKIRRDKIGFVFQQFNLIP--LLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVA 155 (235)
T ss_dssp HHHHHHHEEEECTTCCCCT--TSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHH
T ss_pred HHHhhccEEEEecCCccCC--CCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHH
Confidence 24999999975443 489999999876543 222233455677888888843 36678899999999999
Q ss_pred hhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH--HHh----hcccccCCchHH
Q 021362 219 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 281 (313)
Q Consensus 219 ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~--rv~----griv~~G~~~ev 281 (313)
||+|++.++++|++|+|+..||+ .+++.|+++.++ .|+||||++.+.. |++ |++++.++++++
T Consensus 156 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 156 IARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC--
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhh
Confidence 99999999999999999999999 566666666432 4799999996533 554 888888877665
No 14
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=6.1e-42 Score=310.75 Aligned_cols=198 Identities=15% Similarity=0.139 Sum_probs=165.3
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
+|+++||++.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++..
T Consensus 6 ~l~i~~l~~~y~~~~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 78 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHE----VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGAIIVNGQNINLVRDKDG 78 (262)
T ss_dssp CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCEEECTTS
T ss_pred eEEEeeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEccccccccc
Confidence 699999999998766 9999999999999999999999999999999999999 99999999997643
Q ss_pred --------------CeEEEEecCCCCCCcccCCcccChHHHH-HhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCC
Q 021362 150 --------------DVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDH 211 (313)
Q Consensus 150 --------------~~i~~v~qd~~~~~~~~ltv~e~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSg 211 (313)
+.++|+||++..++ .+||+||+.++. ..++.+.....+++.++++.++.. .++++.+|||
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~Q~~~l~~--~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSg 156 (262)
T 1b0u_A 79 QLKVADKNQLRLLRTRLTMVFQHFNLWS--HMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSG 156 (262)
T ss_dssp SEEESCHHHHHHHHHHEEEECSSCCCCT--TSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCH
T ss_pred cccccChhhHHHHhcceEEEecCcccCC--CCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCH
Confidence 24999999965433 589999999864 333433233346678899999843 4667789999
Q ss_pred cCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCC
Q 021362 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 212 G~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~ 277 (313)
||||||+||+|++.++++|++|+|+..||. .+++.|+++.++ .+++|||++++.. |++ |++++.|+
T Consensus 157 Gq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~ 236 (262)
T 1b0u_A 157 GQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 236 (262)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999 455666665432 4799999999876 555 99999999
Q ss_pred chHHHH
Q 021362 278 PPDVAK 283 (313)
Q Consensus 278 ~~ev~~ 283 (313)
++++..
T Consensus 237 ~~~~~~ 242 (262)
T 1b0u_A 237 PEQVFG 242 (262)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988754
No 15
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=8.2e-42 Score=303.06 Aligned_cols=193 Identities=16% Similarity=0.076 Sum_probs=158.4
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
+||+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|++..
T Consensus 3 ~~l~~~~l~~~y~~~~----~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 75 (224)
T 2pcj_A 3 EILRAENIKKVIRGYE----ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA---PTEGKVFLEGKEVDYTNEKE 75 (224)
T ss_dssp EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC---CSEEEEEETTEECCSSCHHH
T ss_pred cEEEEEeEEEEECCEe----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCCCCHHH
Confidence 4799999999998766 9999999999999999999999999999999999999 99999999997642
Q ss_pred ------CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhh
Q 021362 150 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 150 ------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~ 221 (313)
+.++|++|++..++ .+|+.||+.++...++.+.....+++.++++.++. ..++++.+||||||||++||+
T Consensus 76 ~~~~~~~~i~~v~q~~~l~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lar 153 (224)
T 2pcj_A 76 LSLLRNRKLGFVFQFHYLIP--ELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIAR 153 (224)
T ss_dssp HHHHHHHHEEEECSSCCCCT--TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHH
T ss_pred HHHHHhCcEEEEecCcccCC--CCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHH
Confidence 34999999965433 48999999987665554333345677889999884 356677899999999999999
Q ss_pred hhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH--HHh----hcccccCC
Q 021362 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ--RVL----KRHISTGK 277 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~--rv~----griv~~G~ 277 (313)
|++.++++|++|+|+..||. .+++.|+++.++ .+++|||++++.. |++ |++++.|+
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 154 ALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 99999999999999999999 455566655432 4799999998722 443 67766553
No 16
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.1e-41 Score=321.06 Aligned_cols=202 Identities=14% Similarity=0.101 Sum_probs=167.6
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
|.+|+++||+|.|++.. ..+|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++.
T Consensus 1 M~~l~i~~l~~~y~~~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 75 (353)
T 1oxx_K 1 MVRIIVKNVSKVFKKGK--VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLVASNGKL 75 (353)
T ss_dssp CCCEEEEEEEEEEGGGT--EEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC---CSEEEEEETTEEEEETTEE
T ss_pred CcEEEEEeEEEEECCEe--eeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECcccccc
Confidence 44799999999997521 018999999999999999999999999999999999999 9999999998542
Q ss_pred -----CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhh
Q 021362 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 149 -----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~ 221 (313)
.+.++|+||+...++ ++||+||+.++...++.+.....+++.++++.++. ..++++.+|||||||||+||+
T Consensus 76 ~~~~~~r~ig~v~Q~~~l~~--~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAr 153 (353)
T 1oxx_K 76 IVPPEDRKIGMVFQTWALYP--NLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALAR 153 (353)
T ss_dssp SSCGGGSCEEEEETTSCCCT--TSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred cCChhhCCEEEEeCCCccCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHH
Confidence 245999999965433 59999999987655554433445678899999883 457788899999999999999
Q ss_pred hhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
|++.++++|++|+|+..||. .+++.|+++.+ ..|+||||++++.. |++ |+++..|+++++..
T Consensus 154 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 154 ALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (353)
T ss_dssp HHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999 45566665543 24799999999987 655 99999999998854
No 17
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.2e-41 Score=308.07 Aligned_cols=197 Identities=14% Similarity=0.122 Sum_probs=163.1
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~----- 149 (313)
+++|+++||++.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++..
T Consensus 5 ~~~l~i~~l~~~y~~~~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 77 (257)
T 1g6h_A 5 MEILRTENIVKYFGEFK----ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK---ADEGRVYFENKDITNKEPA 77 (257)
T ss_dssp CEEEEEEEEEEEETTEE----EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHH
T ss_pred CcEEEEeeeEEEECCEe----eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHH
Confidence 45899999999998766 9999999999999999999999999999999999999 99999999997642
Q ss_pred ----CeEEEEecCCCCCCcccCCcccChHHHHHh--cC-----------CCCCccHHHHHHHHHHhhc--CCCccCCCCC
Q 021362 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHAR--RG-----------APWTFNPLLLLNCLKNLRN--QGSVYAPSFD 210 (313)
Q Consensus 150 ----~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~--~~-----------~~~~~~~~~~~~~l~~l~~--~~~~~~~~LS 210 (313)
+.++|++|++..++ .+|+.||+.++... .+ .......+++.++++.++. ..++++.+||
T Consensus 78 ~~~~~~i~~v~q~~~l~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS 155 (257)
T 1g6h_A 78 ELYHYGIVRTFQTPQPLK--EMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELS 155 (257)
T ss_dssp HHHHHTEEECCCCCGGGG--GSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSC
T ss_pred HHHhCCEEEEccCCccCC--CCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCC
Confidence 24999999965433 48999999886432 12 1222234567889998883 4567788999
Q ss_pred CcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccC
Q 021362 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTG 276 (313)
Q Consensus 211 gG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G 276 (313)
|||||||+||+|++.++++|++|+|+..||. .+++.|+++.++ .+++|||++++.. |++ |++++.|
T Consensus 156 gGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g 235 (257)
T 1g6h_A 156 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235 (257)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEe
Confidence 9999999999999999999999999999999 556666665432 4799999998865 555 8999999
Q ss_pred CchH
Q 021362 277 KPPD 280 (313)
Q Consensus 277 ~~~e 280 (313)
++++
T Consensus 236 ~~~~ 239 (257)
T 1g6h_A 236 RGEE 239 (257)
T ss_dssp ESHH
T ss_pred CHHH
Confidence 9888
No 18
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.3e-40 Score=298.22 Aligned_cols=197 Identities=15% Similarity=0.109 Sum_probs=162.2
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
+||+++||++.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 5 ~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 77 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAIH----AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR---AQKGKIIFNGQDITNKPAHV 77 (240)
T ss_dssp EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHH
T ss_pred ceEEEEeEEEEECCee----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCCHHH
Confidence 4799999999998766 9999999999999999999999999999999999999 99999999997642
Q ss_pred ---CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---cCCCccCCCCCCcCCCcchhhhhh
Q 021362 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---NQGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 150 ---~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---~~~~~~~~~LSgG~kqRv~ia~al 223 (313)
+.++|++|++..+. .+|++||+.++.. .........+++.++++.++ ...++++.+||||||||++||+|+
T Consensus 78 ~~~~~i~~v~q~~~l~~--~ltv~enl~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL 154 (240)
T 1ji0_A 78 INRMGIALVPEGRRIFP--ELTVYENLMMGAY-NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRAL 154 (240)
T ss_dssp HHHTTEEEECSSCCCCT--TSBHHHHHHGGGT-TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHH
T ss_pred HHhCCEEEEecCCccCC--CCcHHHHHHHhhh-cCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHH
Confidence 23999999965443 4899999988531 12222333456778888774 345678889999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
+.++++|++|+|+..||. .+++.|+++.+ ..+++|||++++.. |++ |++++.|+++++.
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 999999999999999999 45566666542 24799999998876 554 8999889888875
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.9e-40 Score=311.71 Aligned_cols=193 Identities=14% Similarity=0.135 Sum_probs=164.2
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------C
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------D 150 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------~ 150 (313)
||+++||+|.|++ . +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++.. +
T Consensus 1 ml~~~~l~~~y~~-~----~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~~~r 72 (348)
T 3d31_A 1 MIEIESLSRKWKN-F----SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV---PDSGRILLDGKDVTDLSPEKH 72 (348)
T ss_dssp CEEEEEEEEECSS-C----EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC---CSEEEEEETTEECTTSCHHHH
T ss_pred CEEEEEEEEEECC-E----EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC---CCCcEEEECCEECCCCchhhC
Confidence 4899999999964 2 8999999999999999999999999999999999999 99999999997642 3
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCce
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar 228 (313)
.++|+||+...++ ++||+||+.++...++.+. . +++.++++.++. ..++++.+|||||||||+||+|++.+++
T Consensus 73 ~ig~v~Q~~~l~~--~ltv~enl~~~~~~~~~~~--~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~ 147 (348)
T 3d31_A 73 DIAFVYQNYSLFP--HMNVKKNLEFGMRMKKIKD--P-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPK 147 (348)
T ss_dssp TCEEECTTCCCCT--TSCHHHHHHHHHHHHCCCC--H-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred cEEEEecCcccCC--CCCHHHHHHHHHHHcCCCH--H-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 5999999965433 5999999999876655433 2 778899999984 4567788999999999999999999999
Q ss_pred EEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 229 VVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 229 ~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
+|++|+|+..||. .+++.|+++.+ ..|+||||++++.. |++ |+++..|+++++.
T Consensus 148 lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 148 ILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp EEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999 55666666543 24799999999877 555 9999999998885
No 20
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=7.9e-41 Score=305.93 Aligned_cols=201 Identities=13% Similarity=0.029 Sum_probs=163.1
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
++|+++||++.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 20 ~~l~~~~l~~~y~~~~----vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~~~ 92 (279)
T 2ihy_A 20 MLIQLDQIGRMKQGKT----ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP---ATSGTVNLFGKMPGKVGYSA 92 (279)
T ss_dssp EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTBCCC---CCH
T ss_pred ceEEEEeEEEEECCEE----EEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCeEEEECCEEcccccCCH
Confidence 3799999999998766 9999999999999999999999999999999999999 99999999997653
Q ss_pred ----CeEEEEecCCCCCCcccCCcccChHHHHHh----cCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchh
Q 021362 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 150 ----~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~----~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~i 219 (313)
+.++|++|++...+...+|++||+.++... ++.+.....+++.++++.++. ..++++.+|||||||||+|
T Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~l 172 (279)
T 2ihy_A 93 ETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMI 172 (279)
T ss_dssp HHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHH
T ss_pred HHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHH
Confidence 359999998643333347999999874211 111222334567888998884 4567788999999999999
Q ss_pred hhhhccCceEEEEcCCccccCh----hhHHHHHhhcc---ce--EEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 220 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EK--WFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 220 a~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~---~~--i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
|+|++.++++|++|+|+..||. .+++.|+++.+ .. +++|||++++.. |++ |++++.|+++++..
T Consensus 173 AraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 173 ARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILT 252 (279)
T ss_dssp HHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHCS
T ss_pred HHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999 45566665543 36 899999998765 555 89999998888743
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=5.2e-40 Score=298.66 Aligned_cols=198 Identities=15% Similarity=0.124 Sum_probs=164.1
Q ss_pred EEEEccceEEcc--c---cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---
Q 021362 77 VVEARCMDEVYD--A---LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~--~---~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--- 148 (313)
||+++||++.|+ + .. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~I~~~g~~~~~~ 74 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKK----ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE---PTSGDVLYDGERKKGY 74 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEE----EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCHH
T ss_pred EEEEEEEEEEecCCCccccc----eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEECchH
Confidence 599999999997 3 34 9999999999999999999999999999999999999 9999999999764
Q ss_pred --CCeEEEEecCCC-CCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC----CCccCCCCCCcCCCcchhhh
Q 021362 149 --PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 149 --~~~i~~v~qd~~-~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~LSgG~kqRv~ia~ 221 (313)
.+.++|++|++. .++ .+|++||+.++.... .+.....+++.++++.++.. .++++.+||||||||++||+
T Consensus 75 ~~~~~i~~v~q~~~~~~~--~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAr 151 (266)
T 2yz2_A 75 EIRRNIGIAFQYPEDQFF--AERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIAS 151 (266)
T ss_dssp HHGGGEEEECSSGGGGCC--CSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHH
T ss_pred HhhhhEEEEeccchhhcC--CCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHH
Confidence 346999999852 333 379999998864332 33334567788999998865 46677899999999999999
Q ss_pred hhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
|++.++++|++|+|+..||. .+++.|+++.++ .|++|||++++.. |++ |++++.|+++++...
T Consensus 152 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 152 VIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999 556666665432 4799999998865 554 899999998888653
No 22
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=6.5e-40 Score=293.69 Aligned_cols=193 Identities=13% Similarity=0.067 Sum_probs=159.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------CC
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 150 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------~~ 150 (313)
||+++|+++.|++ +|+|+||+|++ |+++|+||||||||||+|+|+|+++ |++|+|.++|++. .+
T Consensus 1 ml~~~~l~~~y~~------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 70 (240)
T 2onk_A 1 MFLKVRAEKRLGN------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK---PDRGEVRLNGADITPLPPERR 70 (240)
T ss_dssp CCEEEEEEEEETT------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCTTTS
T ss_pred CEEEEEEEEEeCC------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCchhhC
Confidence 4789999999974 59999999999 9999999999999999999999999 9999999999653 24
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCce
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar 228 (313)
.++|++|++..++ .+|++||+.++...++. ....+++.++++.++. ..++++.+||||||||++||+|++.+++
T Consensus 71 ~i~~v~q~~~l~~--~ltv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 146 (240)
T 2onk_A 71 GIGFVPQDYALFP--HLSVYRNIAYGLRNVER--VERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp CCBCCCSSCCCCT--TSCHHHHHHTTCTTSCH--HHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred cEEEEcCCCccCC--CCcHHHHHHHHHHHcCC--chHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 5899999965433 58999999875432221 1124567888998884 3566778999999999999999999999
Q ss_pred EEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 229 VVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 229 ~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+|++|+|+..||. .+++.|+++.+ ..+++|||++++.. |++ |++++.|+++++..
T Consensus 147 lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999 55666666543 24799999998876 554 99999999988754
No 23
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=4.5e-39 Score=283.41 Aligned_cols=179 Identities=15% Similarity=0.172 Sum_probs=151.2
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---CCeE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDVA 152 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~---~~~i 152 (313)
.+|+++|+++.|++ . +|+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+. .+.+
T Consensus 9 ~~l~~~~ls~~y~~-~----il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~~i 80 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-P----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNGVPITKVKGKI 80 (214)
T ss_dssp CEEEEEEEEEESSS-E----EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGGGGGE
T ss_pred ceEEEEEEEEEeCC-e----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEhhhhcCcE
Confidence 37999999999987 6 9999999999999999999999999999999999999 9999999999653 3569
Q ss_pred EEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCC-CccCCCCCCcCCCcchhhhhhccCceEEE
Q 021362 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 153 ~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~LSgG~kqRv~ia~al~~~ar~Li 231 (313)
+|++|++..++ .+|+.||+.++...++. .. ..+++.++++.++... ++++.+||||||||++||+|++.++++|+
T Consensus 81 ~~v~q~~~~~~--~~tv~enl~~~~~~~~~-~~-~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lll 156 (214)
T 1sgw_A 81 FFLPEEIIVPR--KISVEDYLKAVASLYGV-KV-NKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYV 156 (214)
T ss_dssp EEECSSCCCCT--TSBHHHHHHHHHHHTTC-CC-CHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEE
T ss_pred EEEeCCCcCCC--CCCHHHHHHHHHHhcCC-ch-HHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 99999976433 48999999987655443 22 3567889999998433 66777999999999999999999999999
Q ss_pred EcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH
Q 021362 232 VDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 232 ~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
+|+|+..||. .+++.|+++.+ ..+++|||++++..
T Consensus 157 LDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~ 198 (214)
T 1sgw_A 157 LDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCD 198 (214)
T ss_dssp EESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSS
T ss_pred EECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 9999999999 45556665542 24799999998764
No 24
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=9.8e-39 Score=288.23 Aligned_cols=191 Identities=14% Similarity=0.112 Sum_probs=157.9
Q ss_pred EEEEccceEEcc-ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 77 ~l~~~~l~~~y~-~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
||+++||++.|+ +.. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.+ .+.++|+
T Consensus 4 ~l~i~~l~~~y~~~~~----vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~-----~~~i~~v 71 (253)
T 2nq2_C 4 ALSVENLGFYYQAENF----LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR---PIQGKIEV-----YQSIGFV 71 (253)
T ss_dssp EEEEEEEEEEETTTTE----EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC---CSEEEEEE-----CSCEEEE
T ss_pred eEEEeeEEEEeCCCCe----EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEE-----eccEEEE
Confidence 799999999998 655 9999999999999999999999999999999999999 99999983 3569999
Q ss_pred ecCCCCCCcccCCcccChHHHHHhc-C---CCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceE
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARR-G---APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~-~---~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~ 229 (313)
+|++..++ .+|+.||+.++.... + .+...+.+++.++++.++. ..++++.+||||||||++||+|++.++++
T Consensus 72 ~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~l 149 (253)
T 2nq2_C 72 PQFFSSPF--AYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKL 149 (253)
T ss_dssp CSCCCCSS--CCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSE
T ss_pred cCCCccCC--CCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 99965443 489999998864322 2 1222334667889998883 35677889999999999999999999999
Q ss_pred EEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 230 VIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 230 Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
|++|+|+..||. .+++.|.++.++ .|++|||++++.. |++ |+ ++.|+++++.
T Consensus 150 llLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 150 ILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp EEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 999999999999 556666666432 4799999999876 554 88 8888888774
No 25
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=6.4e-39 Score=288.96 Aligned_cols=196 Identities=19% Similarity=0.065 Sum_probs=154.3
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHH--hcccCCCCceeecCCCCCC---
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKASSFDSQVKPP--- 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl--~~~~~p~~G~i~~~g~~~~--- 149 (313)
|+||+++||++.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+ ++ |++|+|.++|.+..
T Consensus 1 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~---p~~G~I~~~g~~~~~~~ 73 (250)
T 2d2e_A 1 MSQLEIRDLWASIDGET----ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT---VERGEILLDGENILELS 73 (250)
T ss_dssp -CEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE---EEEEEEEETTEECTTSC
T ss_pred CceEEEEeEEEEECCEE----EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCceEEEECCEECCCCC
Confidence 45799999999998766 99999999999999999999999999999999998 77 99999999997642
Q ss_pred ------CeEEEEecCCCCCCcccCCcccChHHHHHh-cCC--CCCccHHHHHHHHHHhhcC---CCccCCC-CCCcCCCc
Q 021362 150 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGA--PWTFNPLLLLNCLKNLRNQ---GSVYAPS-FDHGVGDP 216 (313)
Q Consensus 150 ------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~-~~~--~~~~~~~~~~~~l~~l~~~---~~~~~~~-LSgG~kqR 216 (313)
..++|++|++..++ .+|+.||+.+.... .+. ......+++.++++.++.. .++++.+ ||||||||
T Consensus 74 ~~~~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQr 151 (250)
T 2d2e_A 74 PDERARKGLFLAFQYPVEVP--GVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKR 151 (250)
T ss_dssp HHHHHHTTBCCCCCCCC-CC--SCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHH
T ss_pred HHHHHhCcEEEeccCCcccc--CCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHH
Confidence 23789999965443 58999999886532 222 1112245678888988852 4566778 99999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH----HHh----hcccccCCch
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ----RVL----KRHISTGKPP 279 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~----rv~----griv~~G~~~ 279 (313)
++||+|++.++++|++|+|+..||. .+++.|+++.++ .|++|||++++.. |++ |++++.|+++
T Consensus 152 v~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 152 NEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 9999999999999999999999999 566666666443 4799999998753 444 8999888876
No 26
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2e-38 Score=288.30 Aligned_cols=199 Identities=17% Similarity=0.042 Sum_probs=158.5
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHH--hcccCCCCceeecCCCCCC---
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKASSFDSQVKPP--- 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl--~~~~~p~~G~i~~~g~~~~--- 149 (313)
+++|+++||++.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+ ++ |++|+|.++|++..
T Consensus 18 ~~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~---p~~G~I~~~g~~i~~~~ 90 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDKA----ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYE---VTGGTVEFKGKDLLALS 90 (267)
T ss_dssp --CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCE---EEEEEEEETTEEGGGSC
T ss_pred CceEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCeEEEECCEECCcCC
Confidence 34799999999998766 99999999999999999999999999999999999 46 89999999997532
Q ss_pred ------CeEEEEecCCCCCCcccCCcccChHHHHH-h---cCCC---CCccHHHHHHHHHHhhcC---CCccCC-CCCCc
Q 021362 150 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHA-R---RGAP---WTFNPLLLLNCLKNLRNQ---GSVYAP-SFDHG 212 (313)
Q Consensus 150 ------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~-~---~~~~---~~~~~~~~~~~l~~l~~~---~~~~~~-~LSgG 212 (313)
..++|++|++..++ .+|+.+|+.+... . .+.+ .....+++.++++.++.. .++++. +||||
T Consensus 91 ~~~~~~~~i~~v~Q~~~l~~--~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgG 168 (267)
T 2zu0_C 91 PEDRAGEGIFMAFQYPVEIP--GVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGG 168 (267)
T ss_dssp HHHHHHHTEEEECSSCCCCT--TCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHH
T ss_pred HHHHhhCCEEEEccCccccc--cccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHH
Confidence 13899999965443 4899999987542 1 2221 112235678889988853 355665 59999
Q ss_pred CCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH----HHh----hcccccCC
Q 021362 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ----RVL----KRHISTGK 277 (313)
Q Consensus 213 ~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~----rv~----griv~~G~ 277 (313)
||||++||+|++.++++|++|+|+..||. .+++.|+++.++ .+++|||++++.. |++ |++++.|+
T Consensus 169 q~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~ 248 (267)
T 2zu0_C 169 EKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 248 (267)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999 566666666443 4699999998743 444 89999999
Q ss_pred chHHH
Q 021362 278 PPDVA 282 (313)
Q Consensus 278 ~~ev~ 282 (313)
++++.
T Consensus 249 ~~~~~ 253 (267)
T 2zu0_C 249 FTLVK 253 (267)
T ss_dssp TTHHH
T ss_pred HHHHh
Confidence 88764
No 27
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=4.1e-38 Score=282.56 Aligned_cols=192 Identities=17% Similarity=0.155 Sum_probs=156.3
Q ss_pred EEEEccceEEc-cccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 77 VVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y-~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
||+++|+++.| ++.. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ml~~~~l~~~y~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 73 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQ----ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ---PTAGEITIDGQPIDNISLEN 73 (243)
T ss_dssp CEEEEEEEECSSSSSC----SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC---CSBSCEEETTEESTTTSCSC
T ss_pred CEEEEEEEEEeCCCCc----eEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHH
Confidence 48999999999 4555 9999999999999999999999999999999999999 9999999998542
Q ss_pred -CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--C-----------CccCCCCCCcCC
Q 021362 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--G-----------SVYAPSFDHGVG 214 (313)
Q Consensus 149 -~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~-----------~~~~~~LSgG~k 214 (313)
.+.++|++|++.. +. .|++||+.++.. .....+++.++++.++.. . +.++.+||||||
T Consensus 74 ~~~~i~~v~q~~~l-~~--~tv~enl~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~ 145 (243)
T 1mv5_A 74 WRSQIGFVSQDSAI-MA--GTIRENLTYGLE-----GDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQR 145 (243)
T ss_dssp CTTTCCEECCSSCC-CC--EEHHHHTTSCTT-----SCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHH
T ss_pred HHhhEEEEcCCCcc-cc--ccHHHHHhhhcc-----CCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHH
Confidence 3458999999654 33 499999976421 112345677778877632 1 124569999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHH
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~ 282 (313)
||++||+|++.++++|++|+|+..||. .+++.|+++.. ..+++|||++.+.. |++ |++++.|+++++.
T Consensus 146 qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (243)
T 1mv5_A 146 QRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELV 225 (243)
T ss_dssp HHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999 66777776643 24799999998765 554 8999999998886
Q ss_pred H
Q 021362 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 226 ~ 226 (243)
T 1mv5_A 226 A 226 (243)
T ss_dssp H
T ss_pred h
Confidence 5
No 28
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.4e-38 Score=289.99 Aligned_cols=196 Identities=15% Similarity=0.115 Sum_probs=156.0
Q ss_pred EEEEccceEEccc---cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC----
Q 021362 77 VVEARCMDEVYDA---LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~---~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~---- 149 (313)
+|+++||++.|++ .. +|+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 16 ~l~~~~l~~~y~~~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~~~~ 88 (271)
T 2ixe_A 16 LVKFQDVSFAYPNHPNVQ----VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ---PTGGKVLLDGEPLVQYDH 88 (271)
T ss_dssp CEEEEEEEECCTTCTTSC----CEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGBCH
T ss_pred eEEEEEEEEEeCCCCCce----eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEEcccCCH
Confidence 6999999999976 44 9999999999999999999999999999999999999 99999999997642
Q ss_pred ----CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC-Ccc-----HHHHHHHHHHh--h--cCCCccCCCCCCcCCC
Q 021362 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFN-----PLLLLNCLKNL--R--NQGSVYAPSFDHGVGD 215 (313)
Q Consensus 150 ----~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~-~~~-----~~~~~~~l~~l--~--~~~~~~~~~LSgG~kq 215 (313)
+.++|++|++.. +. .|++||+.++... ... ... ...+.++++.+ + ...++++.+|||||||
T Consensus 89 ~~~~~~i~~v~Q~~~l-~~--~tv~enl~~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~Q 163 (271)
T 2ixe_A 89 HYLHTQVAAVGQEPLL-FG--RSFRENIAYGLTR--TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQ 163 (271)
T ss_dssp HHHHHHEEEECSSCCC-CS--SBHHHHHHTTCSS--CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHH
T ss_pred HHHhccEEEEecCCcc-cc--ccHHHHHhhhccc--CChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHH
Confidence 359999999654 33 5999999875321 111 000 11123455555 3 2346677899999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH--HHh----hcccccCCchHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 281 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~--rv~----griv~~G~~~ev 281 (313)
|++||+|++.++++|++|+|+..||. .+++.|+++.. .+|+||||++++.. |++ |++++.|+++++
T Consensus 164 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l 243 (271)
T 2ixe_A 164 AVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQL 243 (271)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999 56677777643 24799999998765 554 899999999888
Q ss_pred HHH
Q 021362 282 AKW 284 (313)
Q Consensus 282 ~~~ 284 (313)
...
T Consensus 244 ~~~ 246 (271)
T 2ixe_A 244 MER 246 (271)
T ss_dssp HHH
T ss_pred HhC
Confidence 643
No 29
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=7.4e-38 Score=281.55 Aligned_cols=191 Identities=16% Similarity=0.187 Sum_probs=153.2
Q ss_pred EEEEccceEEc--cccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-----
Q 021362 77 VVEARCMDEVY--DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 77 ~l~~~~l~~~y--~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~----- 149 (313)
-|+++||++.| ++.. +|+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 7 ~~~~~~l~~~y~~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~i~g~~~~~~~~~ 79 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPV----ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI---PENGQVLIDGHDLALADPN 79 (247)
T ss_dssp EEEEEEEEEESSTTSCE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHH
T ss_pred ceeEEEEEEEeCCCCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHH
Confidence 48999999999 3444 9999999999999999999999999999999999999 99999999997643
Q ss_pred ---CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc-------------CCCccCCCCCCcC
Q 021362 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-------------QGSVYAPSFDHGV 213 (313)
Q Consensus 150 ---~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-------------~~~~~~~~LSgG~ 213 (313)
+.++|++|++..+ . .|++||+.++. + ....+++.++++.++. ..+.++.+|||||
T Consensus 80 ~~~~~i~~v~Q~~~l~-~--~tv~enl~~~~-----~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq 150 (247)
T 2ff7_A 80 WLRRQVGVVLQDNVLL-N--RSIIDNISLAN-----P-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQ 150 (247)
T ss_dssp HHHHHEEEECSSCCCT-T--SBHHHHHTTTC-----T-TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHH
T ss_pred HHHhcEEEEeCCCccc-c--ccHHHHHhccC-----C-CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHH
Confidence 2499999996543 3 59999997641 1 1234455666665552 1233557999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHH
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 281 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev 281 (313)
|||++||+|++.++++|++|+|+..||. .+++.|+++.. ..|++|||++.+.. |++ |++++.|+++++
T Consensus 151 ~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l 230 (247)
T 2ff7_A 151 RQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKEL 230 (247)
T ss_dssp HHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999 45556655532 24799999998754 554 899999998887
Q ss_pred HH
Q 021362 282 AK 283 (313)
Q Consensus 282 ~~ 283 (313)
..
T Consensus 231 ~~ 232 (247)
T 2ff7_A 231 LS 232 (247)
T ss_dssp HT
T ss_pred Hh
Confidence 53
No 30
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=8.9e-38 Score=288.82 Aligned_cols=192 Identities=14% Similarity=0.102 Sum_probs=155.3
Q ss_pred EEEEccceEEccc-cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~-~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
.|+++||++.|++ .. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|++..
T Consensus 53 ~i~~~~vs~~y~~~~~----vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~G~~i~~~~~~~ 125 (306)
T 3nh6_A 53 RIEFENVHFSYADGRE----TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD---ISSGCIRIDGQDISQVTQAS 125 (306)
T ss_dssp CEEEEEEEEESSTTCE----EEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC---CSEEEEEETTEETTSBCHHH
T ss_pred eEEEEEEEEEcCCCCc----eeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCcEEEECCEEcccCCHHH
Confidence 5999999999964 44 9999999999999999999999999999999999999 99999999998753
Q ss_pred --CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc-------------CCCccCCCCCCcCC
Q 021362 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-------------QGSVYAPSFDHGVG 214 (313)
Q Consensus 150 --~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-------------~~~~~~~~LSgG~k 214 (313)
+.++||+|+++.+ . .|++||+.++... ...+++.++++.++. .......+||||||
T Consensus 126 ~r~~i~~v~Q~~~lf-~--~Tv~eNi~~~~~~------~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqr 196 (306)
T 3nh6_A 126 LRSHIGVVPQDTVLF-N--DTIADNIRYGRVT------AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEK 196 (306)
T ss_dssp HHHTEEEECSSCCCC-S--EEHHHHHHTTSTT------CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHH
T ss_pred HhcceEEEecCCccC-c--ccHHHHHHhhccc------CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHH
Confidence 2599999997644 3 5999999875321 123344444444331 11234569999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHH
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~ 282 (313)
||++||+|++.++++|++|+++..||. .+++.|.++... +|+||||++.+.. |++ |++++.|+++++.
T Consensus 197 QRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G~~~el~ 276 (306)
T 3nh6_A 197 QRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALL 276 (306)
T ss_dssp HHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999 455556655433 4799999999977 655 9999999999987
Q ss_pred HH
Q 021362 283 KW 284 (313)
Q Consensus 283 ~~ 284 (313)
..
T Consensus 277 ~~ 278 (306)
T 3nh6_A 277 SR 278 (306)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 31
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.7e-37 Score=280.16 Aligned_cols=191 Identities=15% Similarity=0.117 Sum_probs=159.9
Q ss_pred EEEEccceEEccc----cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC----
Q 021362 77 VVEARCMDEVYDA----LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~----~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~---- 148 (313)
||+++|+++.|++ .. +|+++||+|+ |++++|+||||||||||+|+|+|++ |++|+|.++|.+.
T Consensus 1 ml~~~~l~~~y~~~~~~~~----il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~----p~~G~I~~~g~~~~~~~ 71 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERF----SLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL----PYSGNIFINGMEVRKIR 71 (263)
T ss_dssp CEEEEEEEEEEEEETTEEE----EEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS----CCEEEEEETTEEGGGCS
T ss_pred CEEEEEEEEEeCCCCccce----eEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC----CCCcEEEECCEECcchH
Confidence 4899999999986 45 9999999999 9999999999999999999999997 8999999998542
Q ss_pred -CCeEE-EEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhh
Q 021362 149 -PDVAT-VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 -~~~i~-~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al 223 (313)
.+.++ |++|++.. .+|+.||+.+....+ ....+++.++++.++.. .++++.+||||||||++||+|+
T Consensus 72 ~~~~i~~~v~Q~~~l----~~tv~enl~~~~~~~----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL 143 (263)
T 2pjz_A 72 NYIRYSTNLPEAYEI----GVTVNDIVYLYEELK----GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLAL 143 (263)
T ss_dssp CCTTEEECCGGGSCT----TSBHHHHHHHHHHHT----CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHH
T ss_pred HhhheEEEeCCCCcc----CCcHHHHHHHhhhhc----chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence 34689 99999654 389999999875433 23456788899998854 4567779999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhccceEEEEcChHHHHH----HHh----hcccccCCchHHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEKWFIEVDLDTAMQ----RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~~i~vtHd~~~~~~----rv~----griv~~G~~~ev~~~ 284 (313)
+.++++|++|+|+..||. .+++.|+++.+..+++|||++++.. |++ |++++.|+++++...
T Consensus 144 ~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 144 ASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp HTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred HhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 999999999999999999 5566666665545799999998754 343 899999998888643
No 32
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.4e-37 Score=279.94 Aligned_cols=188 Identities=18% Similarity=0.144 Sum_probs=156.2
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
||+++||++. . +|+|+||+|++||+++|+||||||||||+|+|+|+++ |+ |+|.++|.+..
T Consensus 4 ~l~~~~l~~~----~----vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~-G~i~~~g~~~~~~~~~~~ 71 (249)
T 2qi9_C 4 VMQLQDVAES----T----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GK-GSIQFAGQPLEAWSATKL 71 (249)
T ss_dssp EEEEEEEEET----T----TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CE-EEEEETTEEGGGSCHHHH
T ss_pred EEEEEceEEE----E----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CC-eEEEECCEECCcCCHHHH
Confidence 6999999987 4 9999999999999999999999999999999999999 99 99999997532
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
+.++|++|++..++ .+|++||+.++. ..+. ..+++.++++.++. ..++++.+||||||||++||+|++.+
T Consensus 72 ~~~i~~v~q~~~~~~--~~tv~e~l~~~~-~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 72 ALHRAYLSQQQTPPF--ATPVWHYLTLHQ-HDKT----RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp HHHEEEECSCCCCCT--TCBHHHHHHTTC-SSTT----CHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred hceEEEECCCCccCC--CCcHHHHHHHhh-ccCC----cHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 34999999965433 489999998642 1111 25678889998883 45667789999999999999999999
Q ss_pred ce-------EEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 227 HK-------VVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 227 ar-------~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++ +|++|+|+..||. .+++.|+++.++ .+++|||++++.. |++ |++++.|+++++..
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99 9999999999999 566666666432 4799999999865 554 89999998888753
No 33
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=278.82 Aligned_cols=191 Identities=11% Similarity=0.096 Sum_probs=148.5
Q ss_pred ccEEEEccceEEccc--cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeE
Q 021362 75 IPVVEARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVA 152 (313)
Q Consensus 75 m~~l~~~~l~~~y~~--~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i 152 (313)
|.+|+++|+++.|++ .. +|+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++| .+
T Consensus 1 M~~l~~~~l~~~y~~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g-----~i 68 (237)
T 2cbz_A 1 MNSITVRNATFTWARSDPP----TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKG-----SV 68 (237)
T ss_dssp -CCEEEEEEEEESCTTSCC----SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE---EEEEEEEECS-----CE
T ss_pred CCeEEEEEEEEEeCCCCCc----eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECC-----EE
Confidence 446999999999973 44 9999999999999999999999999999999999999 9999999998 38
Q ss_pred EEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHH---HHHhhcC-------CCccCCCCCCcCCCcchhhhh
Q 021362 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---LKNLRNQ-------GSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 153 ~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~---l~~l~~~-------~~~~~~~LSgG~kqRv~ia~a 222 (313)
+|++|++. ++ .+|++||+.++.. .. ....+++.+. ++.++.. .++++.+||||||||++||+|
T Consensus 69 ~~v~Q~~~-~~--~~tv~enl~~~~~---~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAra 141 (237)
T 2cbz_A 69 AYVPQQAW-IQ--NDSLRENILFGCQ---LE-EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARA 141 (237)
T ss_dssp EEECSSCC-CC--SEEHHHHHHTTSC---CC-TTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHH
T ss_pred EEEcCCCc-CC--CcCHHHHhhCccc---cC-HHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 99999964 33 4799999977421 11 1122222222 2223211 245677999999999999999
Q ss_pred hccCceEEEEcCCccccChhhHHHHHhhc-------c--ceEEEEcChHHHHH--HHh----hcccccCCchHHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMF-------D--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE~~~~~l~~l~-------~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~~ 284 (313)
++.++++|++|+|+..||....+.+.++. . ..|++|||++.+.. |++ |++++.|+++++...
T Consensus 142 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 218 (237)
T 2cbz_A 142 VYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR 218 (237)
T ss_dssp HHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH
T ss_pred HhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc
Confidence 99999999999999999995555444433 1 24699999988654 544 899999999887543
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=7.7e-36 Score=265.46 Aligned_cols=185 Identities=11% Similarity=0.129 Sum_probs=146.3
Q ss_pred EEEEccceEEcc--ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEE
Q 021362 77 VVEARCMDEVYD--ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 77 ~l~~~~l~~~y~--~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~ 154 (313)
+|+++|+++.|+ +.. +|+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++| .++|
T Consensus 6 ~l~~~~l~~~y~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g-----~i~~ 73 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTP----VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG-----RISF 73 (229)
T ss_dssp EEEEEEEEECSSTTSCC----SEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEECS-----CEEE
T ss_pred eEEEEEEEEEeCCCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCccEEEECC-----EEEE
Confidence 799999999995 344 9999999999999999999999999999999999999 9999999988 4899
Q ss_pred EecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cC----CCccCCCCCCcCCCcchhhh
Q 021362 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQ----GSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 155 v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~----~~~~~~~LSgG~kqRv~ia~ 221 (313)
++|++.. ++ .|++||+.++.. . ...+..+.++.++ .. .+....+||||||||++||+
T Consensus 74 v~q~~~~-~~--~tv~enl~~~~~-----~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAr 143 (229)
T 2pze_A 74 CSQFSWI-MP--GTIKENIIFGVS-----Y--DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLAR 143 (229)
T ss_dssp ECSSCCC-CS--BCHHHHHHTTSC-----C--CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHH
T ss_pred EecCCcc-cC--CCHHHHhhccCC-----c--ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHH
Confidence 9999654 33 499999976421 1 1122223333222 10 12235699999999999999
Q ss_pred hhccCceEEEEcCCccccChhhHHHHHhh-cc------ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSM-FD------EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE~~~~~l~~l-~~------~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++.++++|++|+|+..||....+.+.++ .. ..+++|||++++.. |++ |++++.|+++++..
T Consensus 144 al~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 218 (229)
T 2pze_A 144 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 218 (229)
T ss_dssp HHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHT
T ss_pred HHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999766666653 21 14699999998765 554 89999999888753
No 35
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=4.2e-37 Score=278.64 Aligned_cols=194 Identities=15% Similarity=0.080 Sum_probs=152.5
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
.+|+++||++.|++.. ...+|+|+||+|++|++++|+||||||||||+|+|+|+++ | +|+|.++|.+.
T Consensus 16 ~~l~i~~l~~~y~~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~-~G~I~i~g~~i~~~~~~~ 90 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQT-NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD---A-EGDIKIGGKNVNKYNRNS 90 (260)
T ss_dssp CCEEEEEEEECCTTCC-SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---C-EEEEEETTEEGGGBCHHH
T ss_pred CeEEEEEEEEEeCCCC-cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC---C-CeEEEECCEEhhhcCHHH
Confidence 3699999999997531 1238999999999999999999999999999999999997 7 89999999653
Q ss_pred -CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc------C-------CCccCCCCCCcCC
Q 021362 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN------Q-------GSVYAPSFDHGVG 214 (313)
Q Consensus 149 -~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~------~-------~~~~~~~LSgG~k 214 (313)
.+.++|++|++..+ . .|++||+.++. .. ...+++.++++.++. . .+.++.+||||||
T Consensus 91 ~~~~i~~v~Q~~~l~-~--~tv~enl~~~~-----~~-~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqk 161 (260)
T 2ghi_A 91 IRSIIGIVPQDTILF-N--ETIKYNILYGK-----LD-ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGER 161 (260)
T ss_dssp HHTTEEEECSSCCCC-S--EEHHHHHHTTC-----TT-CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHH
T ss_pred HhccEEEEcCCCccc-c--cCHHHHHhccC-----CC-CCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHH
Confidence 23599999997543 3 59999997642 11 123445555555441 0 1245679999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHH
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~ 282 (313)
||++||+|++.++++|++|+|+..||. .+++.|+++.+. .+++|||++.+.. |++ |++++.|+++++.
T Consensus 162 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 241 (260)
T 2ghi_A 162 QRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLL 241 (260)
T ss_dssp HHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999 455566665432 4799999998754 554 8999999998886
Q ss_pred H
Q 021362 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 242 ~ 242 (260)
T 2ghi_A 242 K 242 (260)
T ss_dssp H
T ss_pred h
Confidence 4
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=289.94 Aligned_cols=189 Identities=14% Similarity=0.148 Sum_probs=153.8
Q ss_pred EEEEccceEEc--cccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-----
Q 021362 77 VVEARCMDEVY--DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 77 ~l~~~~l~~~y--~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~----- 149 (313)
.|+++||+|.| ++.. +|+|+||+|++||+++|+||||||||||+|+|+|++ +++|+|.++|++..
T Consensus 19 ~i~~~~l~~~y~~~~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~----~~~G~I~i~G~~i~~~~~~ 90 (390)
T 3gd7_A 19 QMTVKDLTAKYTEGGNA----ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL----NTEGEIQIDGVSWDSITLE 90 (390)
T ss_dssp CEEEEEEEEESSSSSCC----SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS----EEEEEEEESSCBTTSSCHH
T ss_pred eEEEEEEEEEecCCCeE----EeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC----CCCeEEEECCEECCcCChH
Confidence 59999999999 4445 999999999999999999999999999999999998 67899999997643
Q ss_pred ---CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCC-----------CCCcC
Q 021362 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPS-----------FDHGV 213 (313)
Q Consensus 150 ---~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~-----------LSgG~ 213 (313)
+.++|+||++..+ . +|++||+.+. .....+++.++++.++. ..++++.+ |||||
T Consensus 91 ~~rr~ig~v~Q~~~lf-~--~tv~enl~~~-------~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGq 160 (390)
T 3gd7_A 91 QWRKAFGVIPQKVFIF-S--GTFRKNLDPN-------AAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGH 160 (390)
T ss_dssp HHHHTEEEESCCCCCC-S--EEHHHHHCTT-------CCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHH
T ss_pred HHhCCEEEEcCCcccC-c--cCHHHHhhhc-------cccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHH
Confidence 3599999996543 3 6999998531 12345677888888873 33455555 99999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHH
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 281 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev 281 (313)
||||+||+|++.++++|++|+|+..||. .+++.|+++... .++||||++.+.. |++ |++++.|+++++
T Consensus 161 rQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el 240 (390)
T 3gd7_A 161 KQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILEL 240 (390)
T ss_dssp HHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999 445555554322 4799999876544 655 999999999998
Q ss_pred HH
Q 021362 282 AK 283 (313)
Q Consensus 282 ~~ 283 (313)
..
T Consensus 241 ~~ 242 (390)
T 3gd7_A 241 YH 242 (390)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=2.3e-34 Score=287.97 Aligned_cols=194 Identities=16% Similarity=0.114 Sum_probs=156.3
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
+|+++|+++.|++.. ..+|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|++.
T Consensus 341 ~i~~~~v~~~y~~~~--~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~~~~~~~~~~ 415 (582)
T 3b5x_A 341 EVDVKDVTFTYQGKE--KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD---VDSGSICLDGHDVRDYKLTNL 415 (582)
T ss_pred eEEEEEEEEEcCCCC--ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEEhhhCCHHHH
Confidence 699999999997521 129999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC-------------CCccCCCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~LSgG~kq 215 (313)
++.++|++|++..+ + .|++||+.++.. + ....+++.++++.++.. ......+|||||||
T Consensus 416 ~~~i~~v~Q~~~l~-~--~tv~eni~~~~~----~-~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~q 487 (582)
T 3b5x_A 416 RRHFALVSQNVHLF-N--DTIANNIAYAAE----G-EYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQ 487 (582)
T ss_pred hcCeEEEcCCCccc-c--ccHHHHHhccCC----C-CCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHH
Confidence 24699999997644 3 599999987521 1 12345666676665421 12244699999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||+|++.++++|++|+|+..||. .+.+.|+++.+. .++||||++.+.. |++ |++++.|+++++..
T Consensus 488 r~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 488 RVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999 455556655432 4799999998866 555 99999999998864
No 38
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2.6e-34 Score=287.66 Aligned_cols=193 Identities=12% Similarity=0.110 Sum_probs=156.6
Q ss_pred EEEEccceEEccc--cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-----
Q 021362 77 VVEARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~--~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~----- 149 (313)
+|+++|+++.|++ .. +|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++..
T Consensus 341 ~i~~~~v~~~y~~~~~~----~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~---p~~G~i~~~g~~~~~~~~~ 413 (582)
T 3b60_A 341 DLEFRNVTFTYPGREVP----ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD---IDEGHILMDGHDLREYTLA 413 (582)
T ss_dssp CEEEEEEEECSSSSSCC----SEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC---CSEEEEEETTEETTTBCHH
T ss_pred cEEEEEEEEEcCCCCCc----cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC---CCCCeEEECCEEccccCHH
Confidence 5999999999974 34 9999999999999999999999999999999999999 99999999997643
Q ss_pred ---CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc-------------CCCccCCCCCCcC
Q 021362 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-------------QGSVYAPSFDHGV 213 (313)
Q Consensus 150 ---~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-------------~~~~~~~~LSgG~ 213 (313)
+.++|++|++..+ + .|++||+.++.. + ....+++.++++.++. .......+|||||
T Consensus 414 ~~~~~i~~v~Q~~~l~-~--~tv~eni~~~~~----~-~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq 485 (582)
T 3b60_A 414 SLRNQVALVSQNVHLF-N--DTVANNIAYART----E-EYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQ 485 (582)
T ss_dssp HHHHTEEEECSSCCCC-S--SBHHHHHHTTTT----S-CCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHH
T ss_pred HHHhhCeEEccCCcCC-C--CCHHHHHhccCC----C-CCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHH
Confidence 2599999997644 3 599999987421 1 1234566677766542 1123456999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHH
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 281 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev 281 (313)
|||++||+|++.++++|++|+|+..||. .+++.|+++.+ ..++||||++.+.. |++ |++++.|+++++
T Consensus 486 ~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 565 (582)
T 3b60_A 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSEL 565 (582)
T ss_dssp HHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999 45555555543 24799999998765 555 999999999998
Q ss_pred HHH
Q 021362 282 AKW 284 (313)
Q Consensus 282 ~~~ 284 (313)
...
T Consensus 566 ~~~ 568 (582)
T 3b60_A 566 LAQ 568 (582)
T ss_dssp HHH
T ss_pred HHc
Confidence 653
No 39
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=5.5e-34 Score=285.97 Aligned_cols=196 Identities=14% Similarity=0.126 Sum_probs=155.0
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC--------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-------- 149 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~-------- 149 (313)
|+++|+++.|++.. ...+|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|++..
T Consensus 342 i~~~~v~~~y~~~~-~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~---p~~G~i~~~g~~i~~~~~~~~~ 417 (595)
T 2yl4_A 342 LEFKNVHFAYPARP-EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD---PASGTISLDGHDIRQLNPVWLR 417 (595)
T ss_dssp EEEEEEEEECSSCT-TSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC---CSEEEEEETTEETTTBCHHHHH
T ss_pred EEEEEEEEEeCCCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCcEEEECCEEhhhCCHHHHH
Confidence 99999999997531 1238999999999999999999999999999999999999 99999999997643
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCCc----cCCCCCCcCCCc
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVGDP 216 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~~----~~~~LSgG~kqR 216 (313)
+.++|++|++..+ + .|++||+.++... ....+.+++.++++.++. +.+. ...+||||||||
T Consensus 418 ~~i~~v~Q~~~l~-~--~tv~eni~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qr 491 (595)
T 2yl4_A 418 SKIGTVSQEPILF-S--CSIAENIAYGADD---PSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQR 491 (595)
T ss_dssp HSEEEECSSCCCC-S--SBHHHHHHTTSSS---TTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHH
T ss_pred hceEEEccCCccc-C--CCHHHHHhhcCCC---ccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHH
Confidence 2599999997654 3 5999999875211 012345667777776652 1122 346999999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
++||+|++.++++|++|+|+..||. .+++.|+++.+. .++||||++.+.. |++ |++++.|+++++..
T Consensus 492 v~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 570 (595)
T 2yl4_A 492 IAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLS 570 (595)
T ss_dssp HHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC---
T ss_pred HHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999 455555555432 4799999998866 555 99999999999865
No 40
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.98 E-value=8.7e-34 Score=283.99 Aligned_cols=194 Identities=16% Similarity=0.137 Sum_probs=154.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
.|+++|+++.|++. ...+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++..
T Consensus 341 ~i~~~~v~~~y~~~--~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~---~~~G~i~i~g~~i~~~~~~~~ 415 (587)
T 3qf4_A 341 SVSFENVEFRYFEN--TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID---PERGRVEVDELDVRTVKLKDL 415 (587)
T ss_dssp CEEEEEEEECSSSS--SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC---CSEEEEEESSSBGGGBCHHHH
T ss_pred cEEEEEEEEEcCCC--CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCcEEEECCEEcccCCHHHH
Confidence 59999999999642 1239999999999999999999999999999999999999 99999999998743
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cC----CCccCCCCCCcCCC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQ----GSVYAPSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~----~~~~~~~LSgG~kq 215 (313)
+.++|++|++..+. .|++||+.++. +. ...+++.+.++..+ .+ ...+..+|||||||
T Consensus 416 r~~i~~v~Q~~~lf~---~tv~eni~~~~-----~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQ 486 (587)
T 3qf4_A 416 RGHISAVPQETVLFS---GTIKENLKWGR-----ED-ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQ 486 (587)
T ss_dssp HHHEEEECSSCCCCS---EEHHHHHTTTC-----SS-CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHH
T ss_pred HhheEEECCCCcCcC---ccHHHHHhccC-----CC-CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHH
Confidence 35999999976543 49999997542 21 12333444443322 11 13455699999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||+|++.++++|++|+|+..||. .+.+.|+++.+. .++||||++.+.. |++ |++++.|+++|+..
T Consensus 487 rv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 487 RLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp HHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999 455555555432 4799999999866 655 99999999999876
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 567 ~ 567 (587)
T 3qf4_A 567 H 567 (587)
T ss_dssp H
T ss_pred C
Confidence 4
No 41
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.98 E-value=4e-34 Score=287.03 Aligned_cols=193 Identities=14% Similarity=0.143 Sum_probs=152.9
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
-|+++|+++.|++.. .+|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|++..
T Consensus 354 ~i~~~~v~~~y~~~~---~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~i~~~~~~~~ 427 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKK---PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD---VDRGQILVDGIDIRKIKRSSL 427 (598)
T ss_dssp CEEEEEEECCSSSSS---CSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred eEEEEEEEEECCCCC---ccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC---CCCeEEEECCEEhhhCCHHHH
Confidence 499999999997421 29999999999999999999999999999999999999 99999999997643
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---------CC----CccCCCCCCcCCC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QG----SVYAPSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~----~~~~~~LSgG~kq 215 (313)
+.++|++|++..+. .|++||+.++. +. ...+++.++++.++. +. .....+|||||||
T Consensus 428 r~~i~~v~Q~~~lf~---~tv~eni~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Q 498 (598)
T 3qf4_B 428 RSSIGIVLQDTILFS---TTVKENLKYGN-----PG-ATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQ 498 (598)
T ss_dssp HHHEEEECTTCCCCS---SBHHHHHHSSS-----TT-CCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHH
T ss_pred HhceEEEeCCCcccc---ccHHHHHhcCC-----CC-CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHH
Confidence 35999999976443 59999997641 11 122334444443331 11 1233589999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||+|++.++++|++|+|+..||. .+.+.|.++.+. .++|||+++.+.. |++ |++++.|+++|+..
T Consensus 499 rv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 499 LLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp HHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999 455555555432 4799999999877 655 99999999999875
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 579 ~ 579 (598)
T 3qf4_B 579 K 579 (598)
T ss_dssp T
T ss_pred C
Confidence 3
No 42
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.98 E-value=4.9e-34 Score=285.38 Aligned_cols=194 Identities=12% Similarity=0.087 Sum_probs=154.4
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
.|+++|+++.|++. ...+|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 339 ~i~~~~v~~~y~~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~~~~~~~~~~ 413 (578)
T 4a82_A 339 RIDIDHVSFQYNDN--EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD---VTSGQILIDGHNIKDFLTGSL 413 (578)
T ss_dssp CEEEEEEEECSCSS--SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred eEEEEEEEEEcCCC--CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHHH
Confidence 49999999999752 1239999999999999999999999999999999999999 99999999997643
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---------C----CCccCCCCCCcCCC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------Q----GSVYAPSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~----~~~~~~~LSgG~kq 215 (313)
+.++|++|++..+. .|++||+.++. +. ...+++.+.++..+. + ......+|||||||
T Consensus 414 r~~i~~v~Q~~~l~~---~tv~eni~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Q 484 (578)
T 4a82_A 414 RNQIGLVQQDNILFS---DTVKENILLGR-----PT-ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQ 484 (578)
T ss_dssp HHTEEEECSSCCCCS---SBHHHHHGGGC-----SS-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHH
T ss_pred hhheEEEeCCCccCc---ccHHHHHhcCC-----CC-CCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHH
Confidence 35999999976543 49999997642 22 223445555554431 1 12344589999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||+|++.++++|++|+|+..||+ .+.+.++++.+. .++||||++.+.. |++ |++++.|+++|+..
T Consensus 485 rv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 485 RLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999 445555555432 4799999999866 555 99999999999865
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 565 ~ 565 (578)
T 4a82_A 565 K 565 (578)
T ss_dssp T
T ss_pred C
Confidence 4
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.98 E-value=3.2e-33 Score=256.77 Aligned_cols=183 Identities=10% Similarity=0.110 Sum_probs=132.8
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
++|+++|+++.+ .. +|+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++| .++|+
T Consensus 39 ~~l~~~~l~~~~--~~----vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g-----~i~~v 104 (290)
T 2bbs_A 39 DSLSFSNFSLLG--TP----VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG-----RISFC 104 (290)
T ss_dssp -----------C--CC----SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC---EEEEEEECCS-----CEEEE
T ss_pred ceEEEEEEEEcC--ce----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECC-----EEEEE
Confidence 369999999864 34 9999999999999999999999999999999999999 9999999988 48999
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc------C-------CCccCCCCCCcCCCcchhhhh
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN------Q-------GSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~------~-------~~~~~~~LSgG~kqRv~ia~a 222 (313)
+|++.. +. .|++||+. +. .. ....+.+.++.++. . .+..+.+||||||||++||+|
T Consensus 105 ~Q~~~l-~~--~tv~enl~-~~-----~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAra 173 (290)
T 2bbs_A 105 SQNSWI-MP--GTIKENII-GV-----SY--DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARA 173 (290)
T ss_dssp CSSCCC-CS--SBHHHHHH-TT-----CC--CHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHH
T ss_pred eCCCcc-Cc--ccHHHHhh-Cc-----cc--chHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHH
Confidence 999654 33 49999986 21 11 11222233332221 1 122356999999999999999
Q ss_pred hccCceEEEEcCCccccChhhHHHHHhh-cc------ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSM-FD------EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE~~~~~l~~l-~~------~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
++.++++|++|+|+..||....+.+.++ .. ..|++|||++.+.. |++ |++++.|+++++..
T Consensus 174 L~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 174 VYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp HHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 9999999999999999999766666653 21 24799999998765 544 89999999988854
No 44
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.97 E-value=2.3e-32 Score=253.63 Aligned_cols=212 Identities=20% Similarity=0.283 Sum_probs=165.8
Q ss_pred EEEEccceEEccccccccccccccccc-----------------------cCCCcEEEEECCCCCcHHHHHHHHHHHhcc
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASN-----------------------VNVKHIVGLAGPPGAGKSTLAAEVVRRINK 133 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~-----------------------i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~ 133 (313)
.|++++|++.|+. +++++++. +++|+++||+||||||||||+++|+|+++
T Consensus 43 ~i~~~~v~~~y~p------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~- 115 (312)
T 3aez_A 43 QIDLLEVEEVYLP------LARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA- 115 (312)
T ss_dssp CCCHHHHHHTHHH------HHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH-
T ss_pred eEEeeehhhhhhh------HHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc-
Confidence 5899999999963 55555553 89999999999999999999999999998
Q ss_pred cCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCC-CccCCCCCCc
Q 021362 134 IWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHG 212 (313)
Q Consensus 134 ~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~LSgG 212 (313)
|+.|. ..+++++||+++++ . |+.+|+.+. ..++.+...+.+.+.++|+.++... +.++++||||
T Consensus 116 --~~~G~---------~~v~~v~qd~~~~~--~-t~~e~~~~~-~~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G 180 (312)
T 3aez_A 116 --RWDHH---------PRVDLVTTDGFLYP--N-AELQRRNLM-HRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHL 180 (312)
T ss_dssp --TSTTC---------CCEEEEEGGGGBCC--H-HHHHHTTCT-TCTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETT
T ss_pred --ccCCC---------CeEEEEecCccCCc--c-cHHHHHHHH-HhcCCChHHHHHHHHHHHHHhCCCcccCCcccCChh
Confidence 87653 35899999977544 3 788887542 2245666677788899999998433 4678899999
Q ss_pred CCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcChHHHHHHHhhcccc----------------cC
Q 021362 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS----------------TG 276 (313)
Q Consensus 213 ~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~~~~rv~griv~----------------~G 276 (313)
|+||+++|++++.++++||+|++++++|..- ..+.++++..|+|+||.+.+..|.+.|.+. .|
T Consensus 181 ~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~~r~~~~~~~~~~g 259 (312)
T 3aez_A 181 HYDIIPGAEQVVRHPDILILEGLNVLQTGPT-LMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTAFADPESHFHHYAA 259 (312)
T ss_dssp TTEEEEEEEEEECSCSEEEEECTTTTCCCSS-CCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTTGGGSTTSTTGGGTT
T ss_pred hhhhhhhHHHhccCCCEEEECCccccCCcch-HHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhccccCcchhhhcccC
Confidence 9999999999999999999999999986311 246677788899999999888766644331 14
Q ss_pred CchHH----HHHHHHhcCCchhH-HhhhcccCccEEeecC
Q 021362 277 KPPDV----AKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 311 (313)
Q Consensus 277 ~~~ev----~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~ 311 (313)
-+++- +..+|...++|+.+ ||+|.+..||+||++.
T Consensus 260 ~s~e~a~~~v~~~~~~~~~p~~~~~i~p~~~~ADlii~~~ 299 (312)
T 3aez_A 260 FSDSQAVVAAREIWRTINRPNLVENILPTRPRATLVLRKD 299 (312)
T ss_dssp CCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEEC
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHhccCCCCCCeEEEecC
Confidence 33333 34557778899987 9999999999999865
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.97 E-value=1.4e-32 Score=296.64 Aligned_cols=197 Identities=15% Similarity=0.096 Sum_probs=161.4
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
-|+++||+++|.+.. +.++|+|+||+|++||.+||+||||||||||+++|.|++. |++|+|.+||.+..
T Consensus 1076 ~I~f~nVsf~Y~~~~-~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~---p~~G~I~iDG~di~~i~~~~l 1151 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERP-EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD---TLGGEIFIDGSEIKTLNPEHT 1151 (1321)
T ss_dssp CEEEEEEEECCTTSC-SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC---CSSSEEEETTEETTTBCHHHH
T ss_pred eEEEEEEEEeCCCCC-CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc---CCCCEEEECCEEhhhCCHHHH
Confidence 499999999997542 2349999999999999999999999999999999999999 99999999998753
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCCccC----CCCCCcCCC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVYA----PSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~~~~----~~LSgG~kq 215 (313)
+.+++|+||++.+. -|++||+.++. .+.....+.+.++++..+. +.+..+ .+|||||||
T Consensus 1152 R~~i~~V~Qdp~LF~---gTIreNI~~gl----d~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQ 1224 (1321)
T 4f4c_A 1152 RSQIAIVSQEPTLFD---CSIAENIIYGL----DPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQ 1224 (1321)
T ss_dssp HTTEEEECSSCCCCS---EEHHHHHSSSS----CTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHH
T ss_pred HhheEEECCCCEeeC---ccHHHHHhccC----CCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHH
Confidence 46999999987655 49999996542 1233455667777766541 233333 389999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||||+.+++++|++|+++.-+|. .+.+.|+++.+. .|+|+|.++.+.. ||+ ||+++.|+++|+++
T Consensus 1225 riaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1225 RIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp HHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999998 455556655543 4799999999888 766 99999999999986
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 1305 ~ 1305 (1321)
T 4f4c_A 1305 E 1305 (1321)
T ss_dssp C
T ss_pred C
Confidence 4
No 46
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=2.4e-31 Score=266.60 Aligned_cols=189 Identities=15% Similarity=0.138 Sum_probs=153.8
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
++++++|+++.|++. .|+++||+|++||++||+||||||||||+|+|+|+++ |++|+|.+. ..++|+
T Consensus 356 ~~l~~~~l~~~~~~~-----~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~-----~~i~~v 422 (607)
T 3bk7_A 356 TLVEYPRLVKDYGSF-----KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGKVEWD-----LTVAYK 422 (607)
T ss_dssp EEEEECCEEEECSSC-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBSCCCCC-----CCEEEE
T ss_pred eEEEEeceEEEecce-----EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEEe-----eEEEEE
Confidence 479999999999762 6899999999999999999999999999999999999 999999872 459999
Q ss_pred ecCCCCCCcccCCcccChHHH-HHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEEEE
Q 021362 156 PMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~ 232 (313)
+|+....+ .+||.+++... .... ...+.+.++++.++. ..++++.+|||||||||+||++++.++++|++
T Consensus 423 ~Q~~~~~~--~~tv~e~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlL 495 (607)
T 3bk7_A 423 PQYIKAEY--EGTVYELLSKIDSSKL-----NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLL 495 (607)
T ss_dssp CSSCCCCC--SSBHHHHHHHHHHHHH-----HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred ecCccCCC--CCcHHHHHHhhhccCC-----CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99964433 47998877654 1111 124567788888884 45667889999999999999999999999999
Q ss_pred cCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh------hcccccCCchHHHHH
Q 021362 233 DGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL------KRHISTGKPPDVAKW 284 (313)
Q Consensus 233 d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~------griv~~G~~~ev~~~ 284 (313)
|+|+..||. .+++.|+++.. ..++||||++++.. |++ |++++.|+|+++...
T Consensus 496 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~~ 564 (607)
T 3bk7_A 496 DEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREG 564 (607)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHhh
Confidence 999999999 45666666542 24799999999987 554 455568999988753
No 47
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=2.2e-31 Score=263.76 Aligned_cols=190 Identities=14% Similarity=0.094 Sum_probs=152.9
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
++++++|+++.|++. .|+++||+|++||++||+||||||||||+|+|+|+++ |++|+|.+. ..++|+
T Consensus 286 ~~l~~~~l~~~~~~~-----~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~~-----~~i~~v 352 (538)
T 1yqt_A 286 TLVTYPRLVKDYGSF-----RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGKIEWD-----LTVAYK 352 (538)
T ss_dssp EEEEECCEEEEETTE-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBCCCCCC-----CCEEEE
T ss_pred eEEEEeeEEEEECCE-----EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEEC-----ceEEEE
Confidence 479999999999762 6899999999999999999999999999999999999 999999872 459999
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEEEEc
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d 233 (313)
+|+.... ..+|+.+++....... . ...+.+.++++.++. ..++++.+|||||||||+||++++.++++|++|
T Consensus 353 ~Q~~~~~--~~~tv~~~~~~~~~~~-~---~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLD 426 (538)
T 1yqt_A 353 PQYIKAD--YEGTVYELLSKIDASK-L---NSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLD 426 (538)
T ss_dssp CSSCCCC--CSSBHHHHHHHHHHHH-H---TCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred ecCCcCC--CCCcHHHHHHhhhccC-C---CHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 9996543 2478987765431111 1 124567778888873 456678899999999999999999999999999
Q ss_pred CCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh------hcccccCCchHHHHH
Q 021362 234 GNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL------KRHISTGKPPDVAKW 284 (313)
Q Consensus 234 ~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~------griv~~G~~~ev~~~ 284 (313)
+|+..||. .+++.|+++.+ ..++||||++++.. |++ |++++.|+++++...
T Consensus 427 EPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~~ 494 (538)
T 1yqt_A 427 EPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMREG 494 (538)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHhh
Confidence 99999999 45666666542 24799999999987 554 456668999888753
No 48
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.96 E-value=6.3e-31 Score=260.23 Aligned_cols=190 Identities=16% Similarity=0.173 Sum_probs=150.2
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
++++++++++.|++. .|+++||+|++||++||+||||||||||+|+|+|+++ |++|+|.+++. .++|+
T Consensus 268 ~~l~~~~l~~~~~~~-----~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~~~----~i~~~ 335 (538)
T 3ozx_A 268 TKMKWTKIIKKLGDF-----QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT---ADEGSVTPEKQ----ILSYK 335 (538)
T ss_dssp EEEEECCEEEEETTE-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSBCCEESSCC----CEEEE
T ss_pred ceEEEcceEEEECCE-----EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCe----eeEee
Confidence 479999999999863 5788899999999999999999999999999999999 99999998753 58999
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccCceEEEEc
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d 233 (313)
+|+.+..+ .+|+.+|+..... .. .......+.++++.++ ...++++.+|||||||||+||+|++.++++|++|
T Consensus 336 ~q~~~~~~--~~tv~~~l~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLD 410 (538)
T 3ozx_A 336 PQRIFPNY--DGTVQQYLENASK--DA-LSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLD 410 (538)
T ss_dssp CSSCCCCC--SSBHHHHHHHHCS--ST-TCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred chhccccc--CCCHHHHHHHhhh--hc-cchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 99855333 4799998876321 11 1122345677788777 4466788899999999999999999999999999
Q ss_pred CCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh---h---cccccCCchHHH
Q 021362 234 GNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL---K---RHISTGKPPDVA 282 (313)
Q Consensus 234 ~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~---g---riv~~G~~~ev~ 282 (313)
+|+..||. .+++.|+++.++ +++||||++++.. |++ | .....+.+.++.
T Consensus 411 EPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 411 QPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 99999999 566666666432 4799999999987 555 3 333455665543
No 49
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.96 E-value=7.1e-31 Score=283.40 Aligned_cols=194 Identities=15% Similarity=0.120 Sum_probs=158.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCC------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD------ 150 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~------ 150 (313)
-|+++|+++.|++.. +.++|+|+||+|++|+.++|+||+|||||||+++|.|++. |++|+|.++|.+..+
T Consensus 415 ~I~~~nvsF~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~---~~~G~I~idG~~i~~~~~~~l 490 (1321)
T 4f4c_A 415 DITVENVHFTYPSRP-DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD---VLKGKITIDGVDVRDINLEFL 490 (1321)
T ss_dssp CEEEEEEEECCSSST-TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHHHH
T ss_pred cEEEEEeeeeCCCCC-CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccc---cccCcccCCCccchhccHHHH
Confidence 399999999997542 3349999999999999999999999999999999999999 999999999987543
Q ss_pred --eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCc----cCCCCCCcCCC
Q 021362 151 --VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHGVGD 215 (313)
Q Consensus 151 --~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~LSgG~kq 215 (313)
.++||+|+++.+. -|++||+.++ .+. .+.+++.++++..+ .+.+. ....|||||||
T Consensus 491 r~~i~~v~Q~~~Lf~---~TI~eNI~~g-----~~~-~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQ 561 (1321)
T 4f4c_A 491 RKNVAVVSQEPALFN---CTIEENISLG-----KEG-ITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQ 561 (1321)
T ss_dssp HHHEEEECSSCCCCS---EEHHHHHHTT-----CTT-CCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHH
T ss_pred hhcccccCCcceeeC---CchhHHHhhh-----ccc-chHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHH
Confidence 5999999987654 5999999765 222 24556666665543 23333 23489999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||||+..++++|++|+++.-||. .+.+.|.++.+. .|+|||.+..+.. +|+ |++++.|+.+|+..
T Consensus 562 RiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 562 RIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHT
T ss_pred HHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHH
Confidence 99999999999999999999999998 455555555432 5799999998877 665 99999999999864
No 50
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.96 E-value=1.2e-30 Score=280.86 Aligned_cols=195 Identities=15% Similarity=0.113 Sum_probs=153.0
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
-|+++|+++.|++.. ...+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 387 ~i~~~~v~~~y~~~~-~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~---~~~G~i~i~g~~i~~~~~~~~ 462 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRK-EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD---PLDGMVSIDGQDIRTINVRYL 462 (1284)
T ss_dssp CEEEEEEEECCSSTT-SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred eEEEEEEEEEcCCCC-CCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEHHhCCHHHH
Confidence 499999999997532 2239999999999999999999999999999999999999 99999999997643
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHH---------hhcCC----CccCCCCCCcCCC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---------LRNQG----SVYAPSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~---------l~~~~----~~~~~~LSgG~kq 215 (313)
+.++||+|++..+. .|++||+.++.. . ...+.+.+.++. +..+. .....+|||||||
T Consensus 463 r~~i~~v~Q~~~l~~---~ti~eNi~~g~~-----~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~Q 533 (1284)
T 3g5u_A 463 REIIGVVSQEPVLFA---TTIAENIRYGRE-----D-VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQ 533 (1284)
T ss_dssp HHHEEEECSSCCCCS---SCHHHHHHHHCS-----S-CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHH
T ss_pred HhheEEEcCCCccCC---ccHHHHHhcCCC-----C-CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHH
Confidence 35999999976543 499999987631 1 123334443333 22111 2344599999999
Q ss_pred cchhhhhhccCceEEEEcCCccccChh----hHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||+|++.++++|++|+++.-||.+ +.+.++.+.+ ..++|||+++.+.. |++ |++++.|+++++..
T Consensus 534 riaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 534 RIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp HHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999994 3344444332 25799999999877 555 99999999999865
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 614 ~ 614 (1284)
T 3g5u_A 614 E 614 (1284)
T ss_dssp T
T ss_pred C
Confidence 3
No 51
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.96 E-value=5.8e-31 Score=283.46 Aligned_cols=197 Identities=14% Similarity=0.096 Sum_probs=154.9
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
.|+++||++.|++.. ...+|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 1030 ~i~~~~v~~~y~~~~-~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~---p~~G~I~i~g~~i~~~~~~~~ 1105 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRP-SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD---PMAGSVFLDGKEIKQLNVQWL 1105 (1284)
T ss_dssp CEEEEEEEBCCSCGG-GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC---CSEEEEESSSSCTTSSCHHHH
T ss_pred cEEEEEEEEECCCCC-CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEcccCCHHHH
Confidence 499999999997542 2238999999999999999999999999999999999999 99999999998743
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCC----ccCCCCCCcCCC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGS----VYAPSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~----~~~~~LSgG~kq 215 (313)
+.++||+||+..+ . .|++||+.++... .....+.+.+.++..+ .+.+ ....+|||||||
T Consensus 1106 r~~i~~v~Q~~~l~-~--~ti~eNi~~~~~~----~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Q 1178 (1284)
T 3g5u_A 1106 RAQLGIVSQEPILF-D--CSIAENIAYGDNS----RVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQ 1178 (1284)
T ss_dssp TTSCEEEESSCCCC-S--SBHHHHHTCCCSS----CCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHH
T ss_pred HhceEEECCCCccc-c--ccHHHHHhccCCC----CCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHH
Confidence 4599999997543 2 6999999764211 1123344555554433 1111 133489999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||+|++.++++|++|+++..||. .+.+.|++..+ ..++||||++++.. |++ |++++.|+++++..
T Consensus 1179 rv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1179 RIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp HHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999 44555555433 25799999999866 665 99999999999875
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
+
T Consensus 1259 ~ 1259 (1284)
T 3g5u_A 1259 Q 1259 (1284)
T ss_dssp S
T ss_pred C
Confidence 4
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.96 E-value=2.5e-30 Score=268.58 Aligned_cols=194 Identities=13% Similarity=0.131 Sum_probs=140.4
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
++|+++|+++.|++.. ..+|+|+||+|++|+++||+||||||||||+|+|+|+++ |++|+|++++. ..++|+
T Consensus 670 ~mL~v~nLs~~Y~g~~--~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~---P~sG~I~~~~~---~~I~yv 741 (986)
T 2iw3_A 670 AIVKVTNMEFQYPGTS--KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL---PTSGEVYTHEN---CRIAYI 741 (986)
T ss_dssp EEEEEEEEEECCTTCS--SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC---CSEEEEEECTT---CCEEEE
T ss_pred ceEEEEeeEEEeCCCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEcCc---cceEee
Confidence 4799999999997521 128999999999999999999999999999999999999 99999999863 247888
Q ss_pred ecCCCCC-----C-------------------------------------------------------------------
Q 021362 156 PMDGFHL-----Y------------------------------------------------------------------- 163 (313)
Q Consensus 156 ~qd~~~~-----~------------------------------------------------------------------- 163 (313)
+|+.+.. .
T Consensus 742 ~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~ 821 (986)
T 2iw3_A 742 KQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSF 821 (986)
T ss_dssp CHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred ccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhh
Confidence 8763210 0
Q ss_pred ------------cccCCcccChHHHH-------------------HhcCCCCCccHHHHHHHHHHhhcC----CCccCCC
Q 021362 164 ------------LSQLDAMEDPKEAH-------------------ARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPS 208 (313)
Q Consensus 164 ------------~~~ltv~e~~~~~~-------------------~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~ 208 (313)
...+++.+|+.+.. ...+.......+++.++|+.++.. .+.++.+
T Consensus 822 sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~ 901 (986)
T 2iw3_A 822 LLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRG 901 (986)
T ss_dssp EEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGG
T ss_pred hhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccc
Confidence 00112222211100 001222233456788899999853 2456779
Q ss_pred CCCcCCCcchhhhhhccCceEEEEcCCccccChh----hHHHHHhhccceEEEEcChHHHHH---HHh----hcccccCC
Q 021362 209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDEKWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 209 LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~----~~~~l~~l~~~~i~vtHd~~~~~~---rv~----griv~~G~ 277 (313)
|||||||||+||++++.++++|++|+|+..||.. +++.|+++...+|+||||++++.. |++ |+++..|.
T Consensus 902 LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999994 444444443335799999999865 444 77776663
No 53
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.9e-29 Score=248.98 Aligned_cols=187 Identities=18% Similarity=0.213 Sum_probs=147.5
Q ss_pred ccceEEccccccccccccccccccCCC-----cEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 81 RCMDEVYDALAQRLLPTSALASNVNVK-----HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 81 ~~l~~~y~~~~~~~~~L~~vsl~i~~G-----eiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
.++.+.|++.. .+++++||++.+| |++||+||||||||||+++|+|+++ |++|+.. ....++|+
T Consensus 350 ~~~~~~y~~~~---~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~---p~~G~~~-----~~~~i~~~ 418 (608)
T 3j16_B 350 ASRAFSYPSLK---KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK---PDEGQDI-----PKLNVSMK 418 (608)
T ss_dssp SSSCCEECCEE---EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC---CSBCCCC-----CSCCEEEE
T ss_pred cceeEEecCcc---cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC---CCCCcCc-----cCCcEEEe
Confidence 67788886532 2789999999998 7899999999999999999999999 9999742 12358999
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccCceEEEEc
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d 233 (313)
+|+....+ ..|+.+++... ..+ .......+.++++.++ ...++++.+|||||||||+||++++.++++|++|
T Consensus 419 ~q~~~~~~--~~tv~e~~~~~--~~~--~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLD 492 (608)
T 3j16_B 419 PQKIAPKF--PGTVRQLFFKK--IRG--QFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLID 492 (608)
T ss_dssp CSSCCCCC--CSBHHHHHHHH--CSS--TTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred cccccccC--CccHHHHHHHH--hhc--ccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 99854333 35788765432 221 1123456678888888 3456788899999999999999999999999999
Q ss_pred CCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh------hcccccCCchHHHHH
Q 021362 234 GNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL------KRHISTGKPPDVAKW 284 (313)
Q Consensus 234 ~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~------griv~~G~~~ev~~~ 284 (313)
+|+..||. .+++.|+++.. ..++||||++++.. |++ |++++.|+|+++...
T Consensus 493 EPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 493 EPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 99999998 56666666642 24799999999987 655 688899999998765
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.95 E-value=3.6e-29 Score=250.80 Aligned_cols=176 Identities=16% Similarity=0.048 Sum_probs=135.2
Q ss_pred ccEEEE--------ccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCcee-----
Q 021362 75 IPVVEA--------RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS----- 141 (313)
Q Consensus 75 m~~l~~--------~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i----- 141 (313)
+.+|++ +||++.|++.. .+|+++| +|++||++||+||||||||||+|+|+|+++ |++|++
T Consensus 81 ~~~i~i~~l~~~~~~~ls~~yg~~~---~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~---p~~G~~~~~~~ 153 (607)
T 3bk7_A 81 FNAISIVNLPEQLDEDCVHRYGVNA---FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI---PNLCEDNDSWD 153 (607)
T ss_dssp SCCCEEEEECTTGGGSEEEECSTTC---CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC---CCTTTTCCCHH
T ss_pred cceEEEecCCccccCCeEEEECCCC---eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC---CCCCccccccc
Confidence 446888 99999997641 2899999 999999999999999999999999999999 999996
Q ss_pred ----ecCCCCC----------CCeEEEEecCCCCCCcc-cCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCc
Q 021362 142 ----FDSQVKP----------PDVATVLPMDGFHLYLS-QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSV 204 (313)
Q Consensus 142 ----~~~g~~~----------~~~i~~v~qd~~~~~~~-~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~ 204 (313)
.++|.+. ...+++++|.....+.. ..|+.|++.. . ...+++.++++.++. ..++
T Consensus 154 ~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~----~-----~~~~~~~~~L~~lgL~~~~~~ 224 (607)
T 3bk7_A 154 NVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK----V-----DEVGKFEEVVKELELENVLDR 224 (607)
T ss_dssp HHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHH----T-----CCSSCHHHHHHHTTCTTGGGS
T ss_pred hhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhh----h-----HHHHHHHHHHHHcCCCchhCC
Confidence 4566542 12467788763322210 1256665532 1 112456788888884 3466
Q ss_pred cCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH
Q 021362 205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 205 ~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
++.+|||||||||+||+|++.++++|++|+|+..||. .+++.|+++.+ ..|+||||++++..
T Consensus 225 ~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~ 293 (607)
T 3bk7_A 225 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDY 293 (607)
T ss_dssp BGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHh
Confidence 7779999999999999999999999999999999999 45666666643 24799999998876
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.95 E-value=1.7e-28 Score=243.05 Aligned_cols=173 Identities=17% Similarity=0.072 Sum_probs=130.5
Q ss_pred EEE-ccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCcee---------ecCCCC
Q 021362 78 VEA-RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS---------FDSQVK 147 (313)
Q Consensus 78 l~~-~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i---------~~~g~~ 147 (313)
.++ +||+|.|++.. .+|+++| +|++||++||+||||||||||+|+|+|+++ |++|++ .++|.+
T Consensus 21 ~~~~~~ls~~yg~~~---~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~---p~~G~~~~~~~~~~~~~~g~~ 93 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNA---FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI---PNLCGDNDSWDGVIRAFRGNE 93 (538)
T ss_dssp ---CCCEEEECSTTC---CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC---CCTTTTCCSHHHHHHHTTTST
T ss_pred hhHhcCcEEEECCcc---ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCccCcchhhhHHhhCCcc
Confidence 444 69999998641 2899999 999999999999999999999999999999 999996 456644
Q ss_pred C----------CCeEEEEecCCCCCCcc-cCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCC
Q 021362 148 P----------PDVATVLPMDGFHLYLS-QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVG 214 (313)
Q Consensus 148 ~----------~~~i~~v~qd~~~~~~~-~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~k 214 (313)
. ...+++++|.....+.. ..++.+++.. .. ..+++.++|+.++. ..++++.+||||||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~----~~-----~~~~~~~~l~~lgl~~~~~~~~~~LSgGek 164 (538)
T 1yqt_A 94 LQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKK----AD-----ETGKLEEVVKALELENVLEREIQHLSGGEL 164 (538)
T ss_dssp HHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHH----HC-----SSSCHHHHHHHTTCTTTTTSBGGGCCHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhh----hh-----HHHHHHHHHHHcCCChhhhCChhhCCHHHH
Confidence 1 12467888864322210 0245554431 11 12346788888884 35667789999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccChh----hHHHHHhhccc---eEEEEcChHHHHH
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE~----~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
|||+||+|++.++++|++|+|+..||.. +++.|+++.+. .|+||||++++..
T Consensus 165 QRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~ 223 (538)
T 1yqt_A 165 QRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDY 223 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 9999999999999999999999999994 66666666432 4799999998876
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.94 E-value=6.1e-28 Score=245.16 Aligned_cols=185 Identities=17% Similarity=0.132 Sum_probs=113.9
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHH---------------------HHHHHHhcccCCCCc-------eeecCCCC
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLA---------------------AEVVRRINKIWPQKA-------SSFDSQVK 147 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLl---------------------k~l~gl~~~~~p~~G-------~i~~~g~~ 147 (313)
+|+||||+|++||++||+||||||||||+ +++.|+.. |+.| .|.+++..
T Consensus 33 ~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~---~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 33 NLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK---PDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC-----------------CCCSEEESCCCEEEESSCC
T ss_pred ceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc---CCccceeccccceEecCch
Confidence 89999999999999999999999999998 88999988 8854 44555543
Q ss_pred C----CCeEEEEecCCCCC-----------------CcccCCcccChHHHHHhc--CCCCCccH------HHHHHHHHHh
Q 021362 148 P----PDVATVLPMDGFHL-----------------YLSQLDAMEDPKEAHARR--GAPWTFNP------LLLLNCLKNL 198 (313)
Q Consensus 148 ~----~~~i~~v~qd~~~~-----------------~~~~ltv~e~~~~~~~~~--~~~~~~~~------~~~~~~l~~l 198 (313)
. ...+++++|....+ ....+|+.||+.+..... ........ ....++++.+
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHT
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHc
Confidence 1 22344444432111 112478999987743211 10000000 1112346667
Q ss_pred hcC---CCccCCCCCCcCCCcchhhhhhccCce--EEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH
Q 021362 199 RNQ---GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 199 ~~~---~~~~~~~LSgG~kqRv~ia~al~~~ar--~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
+.. .++++.+|||||||||+||+|++.+++ +|++|+|+..||+ .+++.|+++.++ .|+||||++++..
T Consensus 190 gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~ 269 (670)
T 3ux8_A 190 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLA 269 (670)
T ss_dssp TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHH
T ss_pred CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhh
Confidence 643 467788999999999999999999988 9999999999999 455556555432 4799999998765
Q ss_pred --HHh----------hcccccCCchHHHH
Q 021362 267 --RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 267 --rv~----------griv~~G~~~ev~~ 283 (313)
|++ |++++.|+++++..
T Consensus 270 ~d~ii~l~~g~~~~~G~i~~~g~~~~~~~ 298 (670)
T 3ux8_A 270 ADYLIDIGPGAGIHGGEVVAAGTPEEVMN 298 (670)
T ss_dssp CSEEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred CCEEEEecccccccCCEEEEecCHHHHhc
Confidence 442 68888999988754
No 57
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.94 E-value=2.2e-27 Score=246.62 Aligned_cols=183 Identities=14% Similarity=0.044 Sum_probs=141.0
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--CCeEEE
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--PDVATV 154 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--~~~i~~ 154 (313)
.|...|+++.|++.. +|+|+||+|++|++++|+||||||||||+|+|+| |+| +|.+. ...++|
T Consensus 435 ~L~~~~ls~~yg~~~----iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~~~~~~~ 499 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKI----LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQEECRTVY 499 (986)
T ss_dssp EEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTTTSCEEE
T ss_pred eeEEeeEEEEECCEE----eEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCccccceeEEE
Confidence 466669999998876 9999999999999999999999999999999996 222 22211 123677
Q ss_pred EecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCceEEE
Q 021362 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 155 v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~ar~Li 231 (313)
++|+...++ ..+|+.+|+.+ ...+ . .+++.++|+.++.. .++++.+||||||||++||++++.++++|+
T Consensus 500 v~q~~~~~~-~~ltv~e~l~~--~~~~----~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLL 571 (986)
T 2iw3_A 500 VEHDIDGTH-SDTSVLDFVFE--SGVG----T-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILL 571 (986)
T ss_dssp TTCCCCCCC-TTSBHHHHHHT--TCSS----C-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEE
T ss_pred Ecccccccc-cCCcHHHHHHH--hhcC----H-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 777642222 25799998865 1112 1 56788899999853 356778999999999999999999999999
Q ss_pred EcCCccccCh----hhHHHHHhhcc-ceEEEEcChHHHHH---HHh----hccc-ccCCchHHHH
Q 021362 232 VDGNYLFLDG----GVWKDVSSMFD-EKWFIEVDLDTAMQ---RVL----KRHI-STGKPPDVAK 283 (313)
Q Consensus 232 ~d~~~lllDE----~~~~~l~~l~~-~~i~vtHd~~~~~~---rv~----griv-~~G~~~ev~~ 283 (313)
+|+|+..||. .+++.|++ .. ..|+||||++++.. |++ |+++ ..|++.++..
T Consensus 572 LDEPTs~LD~~~~~~l~~~L~~-~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 572 LDEPTNHLDTVNVAWLVNYLNT-CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp EESTTTTCCHHHHHHHHHHHHH-SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred EECCccCCCHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 9999999999 44555555 22 24799999999986 555 8886 5799888764
No 58
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.93 E-value=3.5e-26 Score=204.61 Aligned_cols=197 Identities=21% Similarity=0.297 Sum_probs=133.0
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHH
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~ 175 (313)
+|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ...+.++|++|+.+ +. .+++.+++.+
T Consensus 14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~--~~~~~i~~v~~d~~--~~-~l~~~~~~~~ 81 (245)
T 2jeo_A 14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE--QRQRKVVILSQDRF--YK-VLTAEQKAKA 81 (245)
T ss_dssp ---------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC--GGGCSEEEEEGGGG--BC-CCCHHHHHHH
T ss_pred eecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc--ccCCceEEEeCCcC--cc-ccCHhHhhhh
Confidence 999999999999999999999999999999999987 334333 23456899999953 22 4788888766
Q ss_pred HHHhcCC--CCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccc
Q 021362 176 AHARRGA--PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (313)
Q Consensus 176 ~~~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~ 253 (313)
....++. +...+.+.+.+.|+.+......+++.||+||+||+++ ++++.+++++++|++.++.++ .+.++.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~----~l~~~~~~ 156 (245)
T 2jeo_A 82 LKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQ----EIRDMFHL 156 (245)
T ss_dssp HTTCCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSH----HHHTTCSE
T ss_pred hccCCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccH----HHHHhcCe
Confidence 5433322 2234566677788877777778889999999999988 467777888888887777774 35556666
Q ss_pred eE-EEEcChHHHHHHHhhcccccCCchHHHHHHHHhcCCchhH-HhhhcccCccEEeec
Q 021362 254 KW-FIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKS 310 (313)
Q Consensus 254 ~i-~vtHd~~~~~~rv~griv~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~ 310 (313)
.| +++|+.. ...|.+.|.+..|...+-+..+|...+.+..+ ++.|.+..||+||++
T Consensus 157 ~i~v~th~~~-~~~r~~~r~~~~G~~~e~~~~~~~~~~~~~~~~~i~p~~~~aD~vi~~ 214 (245)
T 2jeo_A 157 RLFVDTDSDV-RLSRRVLRDVRRGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPR 214 (245)
T ss_dssp EEEEECCHHH-HHHHHHHHHTC---CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEES
T ss_pred EEEEECCHHH-HHHHHHHHHHHcCCCHHHHHHHHHHhhhHhHHHhCCcchhcceEEEcC
Confidence 65 5566533 33344444336676666666667776666655 889999999999943
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.7e-26 Score=231.17 Aligned_cols=175 Identities=15% Similarity=0.083 Sum_probs=122.5
Q ss_pred cceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCcee-----------ecCCCCCC-
Q 021362 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-----------FDSQVKPP- 149 (313)
Q Consensus 82 ~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i-----------~~~g~~~~- 149 (313)
+++++|+... ..|++++ .+++||++||+||||||||||+|+|+|+++ |++|+| .+.|....
T Consensus 82 ~~~~~Y~~~~---~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~---P~~G~i~~~~~~~~~~~~~~g~~~~~ 154 (608)
T 3j16_B 82 HVTHRYSANS---FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK---PNLGRFDDPPEWQEIIKYFRGSELQN 154 (608)
T ss_dssp TEEEECSTTS---CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC---CCTTTTCCSSCHHHHHHHTTTSTHHH
T ss_pred CeEEEECCCc---eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC---CCCceEecccchhhhhheecChhhhh
Confidence 6788887543 1566666 689999999999999999999999999999 999998 34443210
Q ss_pred -------Ce--EEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcch
Q 021362 150 -------DV--ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 150 -------~~--i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ 218 (313)
+. ..+.+|.....+ ..+..+................+++.++++.++. ..++++.+|||||||||+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~ 231 (608)
T 3j16_B 155 YFTKMLEDDIKAIIKPQYVDNIP---RAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFA 231 (608)
T ss_dssp HHHHHHHTSCCCEEECCCTTTHH---HHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHH
T ss_pred hhhHHHHHhhhhhhchhhhhhhh---hhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHH
Confidence 01 112222211110 0111111111111111122345778899999984 456778899999999999
Q ss_pred hhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH
Q 021362 219 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 219 ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
||+|++.++++|++|+|+..||. .+++.|+++.++ .|+||||++++..
T Consensus 232 iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~ 286 (608)
T 3j16_B 232 IGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDY 286 (608)
T ss_dssp HHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHH
T ss_pred HHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 99999999999999999999999 466777777654 4799999999986
No 60
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.3e-28 Score=239.33 Aligned_cols=187 Identities=12% Similarity=-0.018 Sum_probs=140.0
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCc-e-eecCCCCCCCeEE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S-SFDSQVKPPDVAT 153 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G-~-i~~~g~~~~~~i~ 153 (313)
+|++++||++.|+ ++||++++|++++|+||||||||||+|+|+|++. |++| + |+++|. ..+.++
T Consensus 117 ~mi~~~nl~~~y~----------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~---p~~G~~pI~vdg~-~~~~i~ 182 (460)
T 2npi_A 117 TMKYIYNLHFMLE----------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL---KFNAYQPLYINLD-PQQPIF 182 (460)
T ss_dssp THHHHHHHHHHHH----------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH---HHHCCCCEEEECC-TTSCSS
T ss_pred chhhhhhhhehhh----------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc---ccCCceeEEEcCC-ccCCee
Confidence 4688889988885 5899999999999999999999999999999999 9999 9 999883 456688
Q ss_pred EEecCCCCCC-cccCCcccChHHHHHh-cCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhh--hccCceE
Q 021362 154 VLPMDGFHLY-LSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL--VGLQHKV 229 (313)
Q Consensus 154 ~v~qd~~~~~-~~~ltv~e~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~a--l~~~ar~ 229 (313)
+++|+...+. ...+++.+|+ ++... .+. ...+++.++++.++........+|||||+||+++|++ ++.++++
T Consensus 183 ~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~---~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i 258 (460)
T 2npi_A 183 TVPGCISATPISDILDAQLPT-WGQSLTSGA---TLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQV 258 (460)
T ss_dssp SCSSCCEEEECCSCCCTTCTT-CSCBCBSSC---CSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred eeccchhhcccccccchhhhh-cccccccCc---chHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCccc
Confidence 9999853211 2246889888 54321 121 1122334455666643333366999999999999999 9999999
Q ss_pred ----EEEcC-CccccChhhHHHHHhh----ccceEEEEcChH------HHHH---H-----Hh-----hcccccCCchHH
Q 021362 230 ----VIVDG-NYLFLDGGVWKDVSSM----FDEKWFIEVDLD------TAMQ---R-----VL-----KRHISTGKPPDV 281 (313)
Q Consensus 230 ----Li~d~-~~lllDE~~~~~l~~l----~~~~i~vtHd~~------~~~~---r-----v~-----griv~~G~~~ev 281 (313)
|++|+ ++..||.. .+.|.++ ....++|+||.+ ++.. | ++ |+++ .|+++++
T Consensus 259 ~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 259 RRSGCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp HHSCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred CcceEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 99999 99999985 3444433 334689999987 4444 6 54 7788 8888776
Q ss_pred H
Q 021362 282 A 282 (313)
Q Consensus 282 ~ 282 (313)
.
T Consensus 337 ~ 337 (460)
T 2npi_A 337 R 337 (460)
T ss_dssp H
T ss_pred h
Confidence 3
No 61
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.90 E-value=2.1e-25 Score=226.49 Aligned_cols=94 Identities=18% Similarity=0.170 Sum_probs=74.6
Q ss_pred HHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCc---eEEEEcCCccccCh----hhHHHHHhhccc---eE
Q 021362 189 LLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDG----GVWKDVSSMFDE---KW 255 (313)
Q Consensus 189 ~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~a---r~Li~d~~~lllDE----~~~~~l~~l~~~---~i 255 (313)
.+..+.++.++.. .++++.+|||||||||+||+|++.++ ++|++|+|+..||. .+++.|+++.++ +|
T Consensus 521 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi 600 (670)
T 3ux8_A 521 KRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVL 600 (670)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 4556777777743 35677799999999999999998876 69999999999998 556666666543 47
Q ss_pred EEEcChHHHHH--HHh----------hcccccCCchHHH
Q 021362 256 FIEVDLDTAMQ--RVL----------KRHISTGKPPDVA 282 (313)
Q Consensus 256 ~vtHd~~~~~~--rv~----------griv~~G~~~ev~ 282 (313)
+||||++++.. |++ |++++.|+++++.
T Consensus 601 ~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 601 VIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp EECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred EEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHH
Confidence 99999998755 443 7999999999884
No 62
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.90 E-value=1.1e-24 Score=189.95 Aligned_cols=182 Identities=32% Similarity=0.458 Sum_probs=142.2
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCC
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~ 183 (313)
.++|++++|+||||||||||+++|+|+++ |+ | ..++++++|++++.. +..+++... ...+.+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~---~~-g----------~~~g~v~~d~~~~~~---~~~~~~~~~-~~~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS---AQ-G----------LPAEVVPMDGFHLDN---RLLEPRGLL-PRKGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH---HT-T----------CCEEEEESGGGBCCH---HHHGGGTCG-GGTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh---hc-C----------CceEEEecCCCcCCH---HHHHHhccc-ccCCCC
Confidence 57899999999999999999999999997 54 3 236789998775532 222222110 123455
Q ss_pred CCccHHHHHHHHHHhhcCCCc------cCCCCCCcCCCcchhhhhhccCc-eEEEEcCCccccChhhHHHHHhhccceEE
Q 021362 184 WTFNPLLLLNCLKNLRNQGSV------YAPSFDHGVGDPVEDDILVGLQH-KVVIVDGNYLFLDGGVWKDVSSMFDEKWF 256 (313)
Q Consensus 184 ~~~~~~~~~~~l~~l~~~~~~------~~~~LSgG~kqRv~ia~al~~~a-r~Li~d~~~lllDE~~~~~l~~l~~~~i~ 256 (313)
..++...+.+.+..+....+. ....+|+|++|++++ + ++++.|++++++||..|..+.+.++..++
T Consensus 81 ~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~-------~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~ 153 (208)
T 3c8u_A 81 ETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGP-------ECRVAIIEGNYLLFDAPGWRDLTAIWDVSIR 153 (208)
T ss_dssp GGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECT-------TCCEEEEEESSTTBCSTTGGGGGGTCSEEEE
T ss_pred chhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcC-------CCcEEEECCceeccCCchhHHHHHhcCEEEE
Confidence 556666677777776543222 233678999999998 7 99999999999999888888888999999
Q ss_pred EEcChHHHHHHHhhcccccCCchHHHHHHHHhcCCchhHHhhhcccCccEEeec
Q 021362 257 IEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKS 310 (313)
Q Consensus 257 vtHd~~~~~~rv~griv~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~ad~ii~~ 310 (313)
++++.+....|++.|.+..|.+.+.+..++..++.|+.+++.+.+..||+||++
T Consensus 154 vd~~~~~~~~R~~~R~~~~g~t~~~~~~~~~~~~~~~~~~i~~~~~~aD~vi~~ 207 (208)
T 3c8u_A 154 LEVPMADLEARLVQRWLDHGLNHDAAVARAQGNDLANARAIEAARLPADLTWPQ 207 (208)
T ss_dssp ECCCHHHHHHHHHHHHHHTTCCHHHHHHHHHTHHHHHHHHHHTTBCCCSEEEC-
T ss_pred EeCCHHHHHHHHHHHHHhcCCCHHHHHHHHHhccHHHHHHHHhCCCCCCEEeeC
Confidence 999999988888888777788888888888888999999999999999999975
No 63
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.90 E-value=2.6e-24 Score=212.89 Aligned_cols=169 Identities=14% Similarity=-0.048 Sum_probs=119.2
Q ss_pred ccceEEccccccccccccccccc-cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCcee-----------ecCCCCC
Q 021362 81 RCMDEVYDALAQRLLPTSALASN-VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-----------FDSQVKP 148 (313)
Q Consensus 81 ~~l~~~y~~~~~~~~~L~~vsl~-i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i-----------~~~g~~~ 148 (313)
++.+.+||.+. ++-..|. +++||++||+||||||||||+|+|+|+++ |++|+| .+.|.+.
T Consensus 3 ~~~~~~~~~~~-----f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~---p~~G~i~~~~~~~~~~~~~~g~~i 74 (538)
T 3ozx_A 3 GEVIHRYKVNG-----FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEII---PNFGDPNSKVGKDEVLKRFRGKEI 74 (538)
T ss_dssp CCEEEESSTTS-----CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC---CCTTCTTSCCCHHHHHHHHTTSTT
T ss_pred CCCceecCCCc-----eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCccccccchhhHHhhcCCeeH
Confidence 45678898642 3444444 45999999999999999999999999999 999998 5666543
Q ss_pred C----------CeEEEEecCCCCCCc-ccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCC
Q 021362 149 P----------DVATVLPMDGFHLYL-SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ~----------~~i~~v~qd~~~~~~-~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kq 215 (313)
. ..+....|....... ...++.+++. .. ...+++.++++.++ ...++++.+|||||||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~----~~-----~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Q 145 (538)
T 3ozx_A 75 YNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILT----KI-----DERGKKDEVKELLNMTNLWNKDANILSGGGLQ 145 (538)
T ss_dssp HHHHHHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHH----HH-----CCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHH
T ss_pred HHHHHHHhhcccchhhccchhhhhhhhccCcHHHHhh----cc-----hhHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence 1 113333333211110 0012332221 11 11234567778877 3457788899999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ 266 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~ 266 (313)
||+||+|++.++++|++|+|+..||. .+++.|+++.+. .|+||||++++..
T Consensus 146 rv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~ 202 (538)
T 3ozx_A 146 RLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDY 202 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHh
Confidence 99999999999999999999999999 466666666432 4799999999876
No 64
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.89 E-value=9.2e-25 Score=191.22 Aligned_cols=144 Identities=17% Similarity=0.078 Sum_probs=95.1
Q ss_pred EEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCC-----CCCCCeEEEEecCC
Q 021362 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-----VKPPDVATVLPMDG 159 (313)
Q Consensus 85 ~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g-----~~~~~~i~~v~qd~ 159 (313)
|+|++.. +|+++ ++|++++|+||||||||||+++|+|+ + |++|+|.... ....+.++|++|++
T Consensus 8 k~~g~~~----~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~---p~~G~I~~~~~~~~~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 8 KTLGQKH----YVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A---LQSKQVSRIILTRPAVEAGEKLGFLPGTL 75 (208)
T ss_dssp CSHHHHH----HHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H---HHTTSCSEEEEEECSCCTTCCCCSSCC--
T ss_pred CCHhHHH----HHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C---CcCCeeeeEEecCCchhhhcceEEecCCH
Confidence 4677666 89984 89999999999999999999999999 8 9999985311 12334588888874
Q ss_pred CCCCcccCCcccCh-HHH----HHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcC
Q 021362 160 FHLYLSQLDAMEDP-KEA----HARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (313)
Q Consensus 160 ~~~~~~~ltv~e~~-~~~----~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~ 234 (313)
.+|+ .+. ..... ....+++.++++. +. |||||++||++++.++++|++|+
T Consensus 76 ----------~enl~~~~~~~~~~~~~---~~~~~~~~~~l~~-gl-----------Gq~qrv~lAraL~~~p~lllLDE 130 (208)
T 3b85_A 76 ----------NEKIDPYLRPLHDALRD---MVEPEVIPKLMEA-GI-----------VEVAPLAYMRGRTLNDAFVILDE 130 (208)
T ss_dssp --------------CTTTHHHHHHHTT---TSCTTHHHHHHHT-TS-----------EEEEEGGGGTTCCBCSEEEEECS
T ss_pred ----------HHHHHHHHHHHHHHHHH---hccHHHHHHHHHh-CC-----------chHHHHHHHHHHhcCCCEEEEeC
Confidence 2222 111 11111 1123445566654 21 99999999999999999999888
Q ss_pred CccccChhhHHHHHhhccc--eEEEEcChHHHHH
Q 021362 235 NYLFLDGGVWKDVSSMFDE--KWFIEVDLDTAMQ 266 (313)
Q Consensus 235 ~~lllDE~~~~~l~~l~~~--~i~vtHd~~~~~~ 266 (313)
|+...-+.+++.|+++ .+ .+++|||++++..
T Consensus 131 Pts~~~~~l~~~l~~l-~~g~tiivtHd~~~~~~ 163 (208)
T 3b85_A 131 AQNTTPAQMKMFLTRL-GFGSKMVVTGDITQVDL 163 (208)
T ss_dssp GGGCCHHHHHHHHTTB-CTTCEEEEEEC------
T ss_pred CccccHHHHHHHHHHh-cCCCEEEEECCHHHHhC
Confidence 8888333677777776 32 3449999998765
No 65
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.87 E-value=3.1e-23 Score=213.46 Aligned_cols=95 Identities=17% Similarity=0.200 Sum_probs=75.8
Q ss_pred HHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccC---ceEEEEcCCccccCh----hhHHHHHhhccc---eE
Q 021362 189 LLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDG----GVWKDVSSMFDE---KW 255 (313)
Q Consensus 189 ~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~---ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i 255 (313)
.++.++|+.++.. .++++.+|||||||||+||++++.+ +++|++|+|+..||. .+++.|.++.+. +|
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI 787 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI 787 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 4567888888853 3567789999999999999999996 699999999999999 555556655443 47
Q ss_pred EEEcChHHHHH--HHh----------hcccccCCchHHHH
Q 021362 256 FIEVDLDTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 256 ~vtHd~~~~~~--rv~----------griv~~G~~~ev~~ 283 (313)
+||||++++.. |++ |++++.|+++++..
T Consensus 788 visHdl~~i~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~ 827 (842)
T 2vf7_A 788 AVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQ 827 (842)
T ss_dssp EECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECHHHHTT
T ss_pred EEcCCHHHHHhCCEEEEECCCCCCCCCEEEEEcCHHHHHh
Confidence 99999999843 543 58888999888754
No 66
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.87 E-value=2.7e-23 Score=214.67 Aligned_cols=94 Identities=18% Similarity=0.182 Sum_probs=74.8
Q ss_pred HHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCc---eEEEEcCCccccCh----hhHHHHHhhccc---eEE
Q 021362 190 LLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDG----GVWKDVSSMFDE---KWF 256 (313)
Q Consensus 190 ~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~a---r~Li~d~~~lllDE----~~~~~l~~l~~~---~i~ 256 (313)
+..++|+.++.. .++++.+|||||||||+||++++.++ ++|++|+|+..||. .+++.|.++.+. +|+
T Consensus 824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 903 (972)
T 2r6f_A 824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 903 (972)
T ss_dssp HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 456788888853 45677899999999999999999764 99999999999999 566666666443 479
Q ss_pred EEcChHHHHH--HHh----------hcccccCCchHHHH
Q 021362 257 IEVDLDTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 257 vtHd~~~~~~--rv~----------griv~~G~~~ev~~ 283 (313)
||||++++.. |++ |++++.|+++++..
T Consensus 904 isHdl~~i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~~ 942 (972)
T 2r6f_A 904 IEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 942 (972)
T ss_dssp ECCCHHHHTTCSEEEEECSSSTTSCCSEEEEESHHHHHT
T ss_pred EcCCHHHHHhCCEEEEEcCCCCCCCCEEEEecCHHHHHh
Confidence 9999998754 443 68888999988854
No 67
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.86 E-value=1.2e-21 Score=170.51 Aligned_cols=178 Identities=24% Similarity=0.340 Sum_probs=134.4
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCC
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~ 183 (313)
.++|+++||+||||||||||+++|+|++. | .++|++||+++.....+++.++..+. ++.+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~---~--------------~i~~v~~d~~~~~~~~~~~~~~~~~~---~~~~ 62 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG---E--------------RVALLPMDHYYKDLGHLPLEERLRVN---YDHP 62 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG---G--------------GEEEEEGGGCBCCCTTSCHHHHHHSC---TTSG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC---C--------------CeEEEecCccccCcccccHHHhcCCC---CCCh
Confidence 47899999999999999999999999986 4 47899999876543346666654332 2334
Q ss_pred CCccHHHHHHHHHHhhcCC--CccCCCCCCcCC----CcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEE
Q 021362 184 WTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVG----DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFI 257 (313)
Q Consensus 184 ~~~~~~~~~~~l~~l~~~~--~~~~~~LSgG~k----qRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~v 257 (313)
...+.+++.+.++.++... ..+...+|+|++ ||+++ +++++.||+++++|| .+..+++..+++
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~-------~~~li~~~~ll~~de----~~~~~~d~~i~l 131 (211)
T 3asz_A 63 DAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRP-------APVVILEGILVLYPK----ELRDLMDLKVFV 131 (211)
T ss_dssp GGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECC-------CSEEEEESTTTTSSH----HHHTTCSEEEEE
T ss_pred hhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCC-------CcEEEEeehhhccCH----HHHHhcCEEEEE
Confidence 4556677888888887443 334448999964 67777 999999999999996 345667888999
Q ss_pred EcChHHHHHHHhhccc-ccCCchHHHHHHHHhcCCchhH-HhhhcccCccEEeecCC
Q 021362 258 EVDLDTAMQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 312 (313)
Q Consensus 258 tHd~~~~~~rv~griv-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~~ 312 (313)
+.+.+....|.+.|.. ..|.....+..++...+.++.+ ++.+.+..||+||.+..
T Consensus 132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~aD~ii~~~~ 188 (211)
T 3asz_A 132 DADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYADVIVPRGG 188 (211)
T ss_dssp ECCHHHHHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEESTT
T ss_pred eCCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhhhhhHHHhcccchhcCeEEEeCCC
Confidence 9999887776665543 4577766667777777777776 88999999999998753
No 68
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.85 E-value=3.3e-22 Score=207.35 Aligned_cols=95 Identities=18% Similarity=0.193 Sum_probs=76.9
Q ss_pred HHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCc---eEEEEcCCccccCh----hhHHHHHhhccc---eE
Q 021362 189 LLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDG----GVWKDVSSMFDE---KW 255 (313)
Q Consensus 189 ~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~a---r~Li~d~~~lllDE----~~~~~l~~l~~~---~i 255 (313)
.+..++|+.++.. ..+++.+|||||+|||+||++|+.++ ++|++|+|+..||. .+++.|.++.+. +|
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVI 862 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVI 862 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 4566788888853 45678899999999999999998765 79999999999999 556666665443 47
Q ss_pred EEEcChHHHHH--HHh----------hcccccCCchHHHH
Q 021362 256 FIEVDLDTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 256 ~vtHd~~~~~~--rv~----------griv~~G~~~ev~~ 283 (313)
+|+||++++.. |++ |++++.|+++++..
T Consensus 863 vI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 863 VIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp EECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred EEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 99999998866 554 78999999999865
No 69
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.85 E-value=2.4e-22 Score=208.32 Aligned_cols=94 Identities=21% Similarity=0.227 Sum_probs=74.3
Q ss_pred HHHHHHHHhhc---CCCccCCCCCCcCCCcchhhhhhccCc---eEEEEcCCccccCh----hhHHHHHhhccc---eEE
Q 021362 190 LLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDG----GVWKDVSSMFDE---KWF 256 (313)
Q Consensus 190 ~~~~~l~~l~~---~~~~~~~~LSgG~kqRv~ia~al~~~a---r~Li~d~~~lllDE----~~~~~l~~l~~~---~i~ 256 (313)
+..++|+.++. ..++++.+|||||||||+||++++.++ ++|++|+|+..||. .+++.|.++.+. +|+
T Consensus 842 ~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 921 (993)
T 2ygr_A 842 RYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIV 921 (993)
T ss_dssp HHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 34677888874 346677899999999999999999764 99999999999999 455666655433 479
Q ss_pred EEcChHHHHH--HHh----------hcccccCCchHHHH
Q 021362 257 IEVDLDTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 257 vtHd~~~~~~--rv~----------griv~~G~~~ev~~ 283 (313)
||||++++.. |++ |++++.|+++++..
T Consensus 922 isHdl~~i~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 922 IEHNLDVIKTSDWIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp ECCCHHHHTTCSEEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred EcCCHHHHHhCCEEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 9999998744 443 68889999988864
No 70
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.85 E-value=5.8e-24 Score=196.00 Aligned_cols=162 Identities=10% Similarity=0.025 Sum_probs=115.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEe
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~ 156 (313)
+|+++||++.|+ .. +|+++||+|++|++++|+||||||||||+++|+|++ +|+|. ++++
T Consensus 101 ~i~~~~vs~~y~-~~----vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I~----------~~v~ 159 (305)
T 2v9p_A 101 FFNYQNIELITF-IN----ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSVL----------SFAN 159 (305)
T ss_dssp HHHHTTCCHHHH-HH----HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEEE----------CGGG
T ss_pred eEEEEEEEEEcC-hh----hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceEE----------EEec
Confidence 488999999997 44 999999999999999999999999999999999998 47774 3567
Q ss_pred cCCCCCCcccCCccc-ChHHHHHhcCCCCCccHHHHHHHHHH-hhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcC
Q 021362 157 MDGFHLYLSQLDAME-DPKEAHARRGAPWTFNPLLLLNCLKN-LRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (313)
Q Consensus 157 qd~~~~~~~~ltv~e-~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~ 234 (313)
|++..+. .|+.+ |+.+.. . ..+.+.+.++. +....+ ...|||||||| |++++.++++|+
T Consensus 160 q~~~lf~---~ti~~~ni~~~~------~--~~~~~~~~i~~~L~~gld--g~~LSgGqkQR---ARAll~~p~iLl--- 220 (305)
T 2v9p_A 160 HKSHFWL---ASLADTRAALVD------D--ATHACWRYFDTYLRNALD--GYPVSIDRKHK---AAVQIKAPPLLV--- 220 (305)
T ss_dssp TTSGGGG---GGGTTCSCEEEE------E--ECHHHHHHHHHTTTGGGG--TCCEECCCSSC---CCCEECCCCEEE---
T ss_pred Ccccccc---ccHHHHhhccCc------c--ccHHHHHHHHHHhHccCC--ccCcCHHHHHH---HHHHhCCCCEEE---
Confidence 7754333 36776 776531 0 11244555555 433222 56999999999 899999999998
Q ss_pred CccccChhhHHHHHhhccceEEEEcChHHHHH--HHh---hcccccCCchHHHHHHHH
Q 021362 235 NYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQ--RVL---KRHISTGKPPDVAKWRIE 287 (313)
Q Consensus 235 ~~lllDE~~~~~l~~l~~~~i~vtHd~~~~~~--rv~---griv~~G~~~ev~~~~~~ 287 (313)
+.-||....+.+..+ +|++..+.. |++ |++++.|+++++ ...|.
T Consensus 221 -Ts~LD~~~~~~i~~l-------tH~~~~~~~aD~ivl~~G~iv~~g~~~el-~~~y~ 269 (305)
T 2v9p_A 221 -TSNIDVQAEDRYLYL-------HSRVQTFRFEQPCTDESGEQPFNITDADW-KSFFV 269 (305)
T ss_dssp -EESSCSTTCGGGGGG-------TTTEEEEECCCCCCCC---CCCCCCHHHH-HHHHH
T ss_pred -ECCCCHHHHHHHHHH-------hCCHHHHHhCCEEEEeCCEEEEeCCHHHH-HHHHH
Confidence 888998444444333 555543322 223 899999999988 44343
No 71
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.82 E-value=1.4e-21 Score=180.78 Aligned_cols=206 Identities=18% Similarity=0.258 Sum_probs=141.2
Q ss_pred EEEEccceEEcccccccccccccccccc-------------------CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNV-------------------NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ 137 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i-------------------~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~ 137 (313)
+|++++|++.|+ . ++++++|.+ .+|+++||+||||||||||+++|+|++.. +|+
T Consensus 37 ~i~~~~v~~~y~--~----~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~-~~~ 109 (308)
T 1sq5_A 37 DLSLEEVAEIYL--P----LSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSR-WPE 109 (308)
T ss_dssp TCCHHHHHHTHH--H----HHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTT-STT
T ss_pred ccchHhHHHHHH--H----HHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhh-CCC
Confidence 589999999995 3 889999998 99999999999999999999999999841 267
Q ss_pred Cceeec---CCCCCCC----eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCC-ccCCCC
Q 021362 138 KASSFD---SQVKPPD----VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-VYAPSF 209 (313)
Q Consensus 138 ~G~i~~---~g~~~~~----~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~L 209 (313)
+|+|.+ +|..... .++++ |. .+.+...+.......+..+..... ...|.+
T Consensus 110 ~G~i~vi~~d~~~~~~~~~~~~~~v-q~---------------------~~~~~~~~~~~~~~~~~~l~~~~~~i~~P~~ 167 (308)
T 1sq5_A 110 HRRVELITTDGFLHPNQVLKERGLM-KK---------------------KGFPESYDMHRLVKFVSDLKSGVPNVTAPVY 167 (308)
T ss_dssp CCCEEEEEGGGGBCCHHHHHHHTCT-TC---------------------TTSGGGBCHHHHHHHHHHHTTTCSCEEECCE
T ss_pred CCeEEEEecCCccCcHHHHHhCCEe-ec---------------------CCCCCCccHHHHHHHHHHHhCCCCceecccc
Confidence 888766 4432110 11222 21 111222233333333333333333 456677
Q ss_pred CCcCCCcchhhhhhccCceEEEEcCCccccChh------hHHHHHhhccceEEEEcChHHHHHHHhhcccc---------
Q 021362 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG------VWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS--------- 274 (313)
Q Consensus 210 SgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~------~~~~l~~l~~~~i~vtHd~~~~~~rv~griv~--------- 274 (313)
+....+|+..+......++++++|+++++.++. -...+.++++..|+|+.|.+...+|++.|.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~ivIlEG~~l~~~~~~~~~~~~~~~~~~~~D~~i~V~~~~~~~~~R~~~R~~~~r~~~~r~~ 247 (308)
T 1sq5_A 168 SHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTDP 247 (308)
T ss_dssp ETTTTEECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTTTTCT
T ss_pred cccccCcccccceecCCCCEEEECchhhCCCccccccccchHHHHHhCCEEEEEECCHHHHHHHHHHHHHHHHHhhccCC
Confidence 777778877655555668899999999998720 00235677888999999999888877754321
Q ss_pred -------cCCchHH----HHHHHHhcCCchhH-HhhhcccCccEEeecC
Q 021362 275 -------TGKPPDV----AKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 311 (313)
Q Consensus 275 -------~G~~~ev----~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~ 311 (313)
.|-+.+- +..+|...++|+.+ |+.|.+..||+||++.
T Consensus 248 ~~~~~~~~g~s~e~a~~~i~~q~~~~~~~~~~~~i~~~~~~AD~vI~n~ 296 (308)
T 1sq5_A 248 DSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKS 296 (308)
T ss_dssp TSTTHHHHTSCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEEC
T ss_pred chhhhcccCCCHHHHHHHHHHHHHhccHHHHHHHcccccccCcEEEEeC
Confidence 2444443 44556677888886 9999999999999875
No 72
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.82 E-value=3.4e-21 Score=163.04 Aligned_cols=140 Identities=11% Similarity=0.012 Sum_probs=85.0
Q ss_pred ccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHH
Q 021362 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (313)
Q Consensus 99 ~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~ 178 (313)
|+||++++||+++|+||||||||||++++.+-.. ..++. ...++++|+....... -++++++
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~---~~~~d---------~~~g~~~~~~~~~~~~-~~~~~~~----- 62 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE---VISSD---------FCRGLMSDDENDQTVT-GAAFDVL----- 62 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG---EEEHH---------HHHHHHCSSTTCGGGH-HHHHHHH-----
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe---EEccH---------HHHHHhcCcccchhhH-HHHHHHH-----
Confidence 6899999999999999999999999996332111 00000 0012333432211000 0000000
Q ss_pred hcCCCCCccHHHHHHHHHHhhcC-CCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChh---------------
Q 021362 179 RRGAPWTFNPLLLLNCLKNLRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG--------------- 242 (313)
Q Consensus 179 ~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~--------------- 242 (313)
....... ...+.. ........|+|||||++||++++.++++|++|+|+..||+.
T Consensus 63 ---------~~~~~~~-~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~ 132 (171)
T 4gp7_A 63 ---------HYIVSKR-LQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIR 132 (171)
T ss_dssp ---------HHHHHHH-HHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHH
T ss_pred ---------HHHHHHH-HhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHH
Confidence 0011111 112211 11133456999999999999999999999999999999975
Q ss_pred -hHHHHHhhcc----c---eEEEEcChHHHHH
Q 021362 243 -VWKDVSSMFD----E---KWFIEVDLDTAMQ 266 (313)
Q Consensus 243 -~~~~l~~l~~----~---~i~vtHd~~~~~~ 266 (313)
..+.+.++.. + .+++|||++++..
T Consensus 133 ~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 133 KHTQQMKKSIKGLQREGFRYVYILNSPEEVEE 164 (171)
T ss_dssp HHHHHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred HHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence 4355554432 2 4799999999875
No 73
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.81 E-value=5.8e-21 Score=177.21 Aligned_cols=210 Identities=22% Similarity=0.311 Sum_probs=157.1
Q ss_pred cceEEccccccccccccccccccCCCc------EEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 82 CMDEVYDALAQRLLPTSALASNVNVKH------IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 82 ~l~~~y~~~~~~~~~L~~vsl~i~~Ge------iv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
.+++.|++.. +|.+++..+.++. ++||+||||||||||+++|.+++.. +|+.| .++++
T Consensus 65 ll~~~~~~~~----~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~-~~~~~-----------~v~~i 128 (321)
T 3tqc_A 65 LLSFYVTARQ----TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR-WPDHP-----------NVEVI 128 (321)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT-STTCC-----------CEEEE
T ss_pred HHHHhhcchH----HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc-cCCCC-----------eEEEE
Confidence 3455566665 8888998888776 9999999999999999999999961 12333 36779
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCC-CccCCCCCCcCCCcchhhhhhccCceEEEEcC
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~ 234 (313)
.+|+++.....+. ++- ....+|.|..++.+.+.+.++.+..+. ....|.||.+..+|+..+......++++|+|+
T Consensus 129 ~~D~f~~~~~~l~--~~~--~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEG 204 (321)
T 3tqc_A 129 TTDGFLYSNAKLE--KQG--LMKRKGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEG 204 (321)
T ss_dssp EGGGGBCCHHHHH--HTT--CGGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEEC
T ss_pred eecccccchhhhh--hHH--HHhhccCcccccHHHHHHHHHhhhccccccccchhhhhccccccCceeeccCCCEEEEEc
Confidence 9998765432111 110 112356777888899999999888766 67889999999999876566677899999999
Q ss_pred CccccChh------hHHHHHhhccceEEEEcChHHHHHHHhhcccc----------c------CCchH----HHHHHHHh
Q 021362 235 NYLFLDGG------VWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS----------T------GKPPD----VAKWRIEY 288 (313)
Q Consensus 235 ~~lllDE~------~~~~l~~l~~~~i~vtHd~~~~~~rv~griv~----------~------G~~~e----v~~~~~~~ 288 (313)
.+++.|+. -|..+.++++..|+|+.+.+....|++.|... . +-+.+ .+...|..
T Consensus 205 i~lL~~~~~~~~~~~~~~l~~~~D~~I~Vda~~d~~~~R~i~Rd~~~r~~a~~~~~s~~~~y~~~s~~ea~~~a~~~w~~ 284 (321)
T 3tqc_A 205 LNILQTGVRKTLQQLQVFVSDFFDFSLFVDAQAQVIQKWYIDRVLSFWRTTFKDPHSYFHYLTQMSETEVAAFAKHVWNE 284 (321)
T ss_dssp TTTTCCCCCSSSSSCCCCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTGGGSTTSTTGGGGGSCHHHHHHHHHHHHHH
T ss_pred cccccccccccccchhhhhhhhcCeEEEEECCHHHHHHHHHHhcchhhhhhccChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 99999862 22347788899999999999999877633321 1 33322 35566788
Q ss_pred cCCchhH-HhhhcccCccEEeecC
Q 021362 289 NDRPNAE-LIMKSKKNADLVIKSI 311 (313)
Q Consensus 289 ~~~~~~~-~i~~~~~~ad~ii~~~ 311 (313)
.+.||.+ +|+|++..||+|++.-
T Consensus 285 ~~~pn~~~~I~ptr~~Adlil~~g 308 (321)
T 3tqc_A 285 INKVNLMENILPYKNRAQLILEKA 308 (321)
T ss_dssp THHHHHHHHTGGGGGGCSEEEEEC
T ss_pred ccccCHHHhCccCccCceEEEecC
Confidence 8999987 9999999999999753
No 74
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.81 E-value=8.4e-21 Score=172.43 Aligned_cols=143 Identities=13% Similarity=0.056 Sum_probs=89.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-----CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCC
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~ 183 (313)
.++|+||||||||||+|+|+|+.. |++|+|.++|.+. .+.+++++|+..... .+|+.||+.++....+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~---~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~--~ltv~d~~~~g~~~~~-- 76 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV---SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKM--KLTVIDTPGFGDQINN-- 76 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CC--EEEEECCCC--CCSBC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC---CCCCccccCCcccCcceeeeeeEEEeecCCCcC--CceEEechhhhhhccc--
Confidence 589999999999999999999999 9999999998653 246899999865433 4899999987643322
Q ss_pred CCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhcc--ceEEEEcCh
Q 021362 184 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--EKWFIEVDL 261 (313)
Q Consensus 184 ~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~--~~i~vtHd~ 261 (313)
....+.+.+.++ ....+....+|||||+||+++|+++ +.++++||+.-.+|+.-.+.++.+.+ ..++|.|..
T Consensus 77 -~~~~~~i~~~~~--~~~~~~~~~~LS~G~~qrv~iaRal---~~lllldep~~gL~~lD~~~l~~L~~~~~vI~Vi~K~ 150 (270)
T 3sop_A 77 -ENCWEPIEKYIN--EQYEKFLKEEVNIARKKRIPDTRVH---CCLYFISPTGHSLRPLDLEFMKHLSKVVNIIPVIAKA 150 (270)
T ss_dssp -TTCSHHHHHHHH--HHHHHHHHHHSCTTCCSSCCCCSCC---EEEEEECCCSSSCCHHHHHHHHHHHTTSEEEEEETTG
T ss_pred -HHHHHHHHHHHH--HHHHhhhHHhcCcccchhhhhheee---eeeEEEecCCCcCCHHHHHHHHHHHhcCcEEEEEecc
Confidence 222233433333 1222344569999999999999987 45899999988898844455555443 356777766
Q ss_pred HHH
Q 021362 262 DTA 264 (313)
Q Consensus 262 ~~~ 264 (313)
+..
T Consensus 151 D~l 153 (270)
T 3sop_A 151 DTM 153 (270)
T ss_dssp GGS
T ss_pred ccC
Confidence 533
No 75
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=99.81 E-value=3.4e-20 Score=173.27 Aligned_cols=216 Identities=30% Similarity=0.488 Sum_probs=171.7
Q ss_pred cccccccccCCCcE--EEEECCCCCcHHHHHHHHHHHhcccC--------------------------------------
Q 021362 96 PTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRINKIW-------------------------------------- 135 (313)
Q Consensus 96 ~L~~vsl~i~~Gei--v~l~GpNGsGKSTLlk~l~gl~~~~~-------------------------------------- 135 (313)
+++.+++.+++|++ ++|+|++||||||+.++|++.+...+
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~~g~~~ir~~~~~a~d~D~~I~~~~g~~i~~i 90 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQPNKVAEM 90 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEECTTSCCCCSSTTSEECCHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCeeeecccccchHHHHHHHHhhhhhhhHHHHHhCccHHHH
Confidence 78889999999998 99999999999999999999764211
Q ss_pred -CCCce-------------------------------------eecCCC----CCC-------CeEEEEecCCCCCCccc
Q 021362 136 -PQKAS-------------------------------------SFDSQV----KPP-------DVATVLPMDGFHLYLSQ 166 (313)
Q Consensus 136 -p~~G~-------------------------------------i~~~g~----~~~-------~~i~~v~qd~~~~~~~~ 166 (313)
-..|+ |.+... .+. ..+.++++|+|+++...
T Consensus 91 f~~~ge~fr~~E~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vi~mDgFh~~~~~ 170 (359)
T 2ga8_A 91 IENQGLFKDHVEDVNFQPVKYSALTSNNEECTAVVARGGTANAIRIAAVDNPVNVNKLAQDSINIAQIVPMDGFHLSRRC 170 (359)
T ss_dssp HHTTTCCGGGTTCTTCCCEEEEC-----CCCEEEECTTGGGGCEEECC------------CCCCSEEEEEGGGGBCCHHH
T ss_pred HHHhcccchHHHhhhcccceeecccCCcccccccccccccccccccccccccccccccccccCCeEEEEecCcCCCCHHH
Confidence 00111 000000 001 24778999999988766
Q ss_pred CCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC-----------------------------CCccCCCCCCcCCCcc
Q 021362 167 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----------------------------GSVYAPSFDHGVGDPV 217 (313)
Q Consensus 167 ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-----------------------------~~~~~~~LSgG~kqRv 217 (313)
+.-+++.......+|.|.+++...+.+.++.|... ....+|.|+.....++
T Consensus 171 L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~P~yD~~~~d~~ 250 (359)
T 2ga8_A 171 LDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPT 250 (359)
T ss_dssp HTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTCCCEEEEEEETTTTEEE
T ss_pred HhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccCceEeeccccCccCCCC
Confidence 66665554456678999999999988888887633 3456789999988888
Q ss_pred hhhhhhccCceEEEEcCCccccChhhHHHHHhhcc-----ceEEEEcChHHHHHHHhhcccccCC--chHHHHHHHHhcC
Q 021362 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-----EKWFIEVDLDTAMQRVLKRHISTGK--PPDVAKWRIEYND 290 (313)
Q Consensus 218 ~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~-----~~i~vtHd~~~~~~rv~griv~~G~--~~ev~~~~~~~~~ 290 (313)
.-...+...++++|+|+.++++++.-|..|.++++ ..|||+-+.++..+|++.|.+..|. ..+-+.+++..++
T Consensus 251 ~~~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad~ev~~~Rli~R~~~~Gl~~s~eea~~r~~~~d 330 (359)
T 2ga8_A 251 PDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQSGLVTTIAEGREKFRSND 330 (359)
T ss_dssp EEEEEECTTCCEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECCHHHHHHHHHHHHHHTTSCSSHHHHHHHHHHCT
T ss_pred CCceEecCCCCEEEEEeehhhccccchhhhhhccccccceEEEEEECCHHHHHHHHHHhhhccCCCCCHHHHHHHHHhcC
Confidence 87777776789999999999999878889999998 6799999999999999988888887 7777888899999
Q ss_pred CchhHHhhhcccCccEEeecC
Q 021362 291 RPNAELIMKSKKNADLVIKSI 311 (313)
Q Consensus 291 ~~~~~~i~~~~~~ad~ii~~~ 311 (313)
.||.++|.|++..||+|++.-
T Consensus 331 ~pN~~~I~~~~~~ad~i~~~~ 351 (359)
T 2ga8_A 331 LLNGRDIDNHLIKVDNIVHIR 351 (359)
T ss_dssp TTSSHHHHHTBCCCTTEEEEE
T ss_pred chhhHhHhhcCCCCCEEEEec
Confidence 999999999999999998753
No 76
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.80 E-value=5.2e-22 Score=190.07 Aligned_cols=151 Identities=9% Similarity=0.036 Sum_probs=108.1
Q ss_pred cccccccccCCCc--------------------EEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 96 PTSALASNVNVKH--------------------IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 96 ~L~~vsl~i~~Ge--------------------iv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
+|+++||+|++|+ ++||+||||||||||+|+|+|+++ |++|+|.++|.+..+. +++
T Consensus 38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~---p~~GsI~~~g~~~t~~-~~v 113 (413)
T 1tq4_A 38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN---EEEGAAKTGVVEVTME-RHP 113 (413)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT---TSTTSCCCCC----CC-CEE
T ss_pred HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC---ccCceEEECCeeccee-EEe
Confidence 8999999999999 999999999999999999999999 9999999998765433 778
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCC-CccCCCCCCc--CCCcchhhhhhcc-------
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHG--VGDPVEDDILVGL------- 225 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~LSgG--~kqRv~ia~al~~------- 225 (313)
+|++. + +.++++|++.+.. + ..++.++++.++... +..+ .||+| |+||+.||++++.
T Consensus 114 ~q~~~-~--~~ltv~D~~g~~~-----~----~~~~~~~L~~~~L~~~~~~~-~lS~G~~~kqrv~la~aL~~~~~p~~l 180 (413)
T 1tq4_A 114 YKHPN-I--PNVVFWDLPGIGS-----T----NFPPDTYLEKMKFYEYDFFI-IISATRFKKNDIDIAKAISMMKKEFYF 180 (413)
T ss_dssp EECSS-C--TTEEEEECCCGGG-----S----SCCHHHHHHHTTGGGCSEEE-EEESSCCCHHHHHHHHHHHHTTCEEEE
T ss_pred ccccc-c--CCeeehHhhcccc-----h----HHHHHHHHHHcCCCccCCeE-EeCCCCccHHHHHHHHHHHhcCCCeEE
Confidence 88843 2 2478999875531 1 124567778777432 3333 39999 9999999999987
Q ss_pred ---CceEEEEcCCccccCh----hhHHHHHhhc-----c------ceE-EEEcChHH
Q 021362 226 ---QHKVVIVDGNYLFLDG----GVWKDVSSMF-----D------EKW-FIEVDLDT 263 (313)
Q Consensus 226 ---~ar~Li~d~~~lllDE----~~~~~l~~l~-----~------~~i-~vtHd~~~ 263 (313)
+++++++|+|+..||. .+++.|+++. + .++ +.+|+++.
T Consensus 181 V~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~ 237 (413)
T 1tq4_A 181 VRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCH 237 (413)
T ss_dssp EECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTS
T ss_pred EEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCc
Confidence 4444445555555554 4566666653 1 223 67787665
No 77
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.80 E-value=1e-20 Score=180.96 Aligned_cols=58 Identities=16% Similarity=0.036 Sum_probs=49.2
Q ss_pred CCCcCCCcchhhhhhccCc--eEEEEcCCccccCh----hhHHHHHhhc--cceEEEEcChHHHHH
Q 021362 209 FDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDG----GVWKDVSSMF--DEKWFIEVDLDTAMQ 266 (313)
Q Consensus 209 LSgG~kqRv~ia~al~~~a--r~Li~d~~~lllDE----~~~~~l~~l~--~~~i~vtHd~~~~~~ 266 (313)
||||||||++||++++.++ ++|++|++...||. .+.+.|+++. ..+++||||++++..
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~ 361 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR 361 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTT
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhh
Confidence 7999999999999999999 99999999999999 5666666665 235799999987643
No 78
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.79 E-value=1.7e-21 Score=171.37 Aligned_cols=154 Identities=13% Similarity=0.011 Sum_probs=92.5
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---------CCeEEEEecCCCCCCccc
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---------PDVATVLPMDGFHLYLSQ 166 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~---------~~~i~~v~qd~~~~~~~~ 166 (313)
-|+|+||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.+. .+.++|++|+...+..
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~----p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~-- 82 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF----P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED-- 82 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS----T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH--
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC----C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH--
Confidence 799999999999999999999999999999999987 7 99988 5431 2347788887543221
Q ss_pred CC-cccChH---HHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh-
Q 021362 167 LD-AMEDPK---EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG- 241 (313)
Q Consensus 167 lt-v~e~~~---~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE- 241 (313)
++ ..+++. +....++. ....+.++++..... .....|||||+||++++ ....+++++.+|++++|||
T Consensus 83 ~~~~~~~l~~~~~~~~~~g~----~~~~i~~~l~~~~~~--il~~~lsggq~qR~~i~--~~~~~~~ll~~~~~~~Lde~ 154 (218)
T 1z6g_A 83 KLKNEDFLEYDNYANNFYGT----LKSEYDKAKEQNKIC--LFEMNINGVKQLKKSTH--IKNALYIFIKPPSTDVLLSR 154 (218)
T ss_dssp HHHTTCEEEEEEETTEEEEE----EHHHHHHHHHTTCEE--EEEECHHHHHHHTTCSS--CCSCEEEEEECSCHHHHHHH
T ss_pred hhhccchhhhhhcccccCCC----cHHHHHHHHhCCCcE--EEEecHHHHHHHHHHhc--CCCcEEEEEeCcCHHHHHHH
Confidence 22 122221 11111221 233455566543311 11147899999999984 2223788888899999999
Q ss_pred ----------hhHHHHHhhc----------cceEEEEcChHHHHH
Q 021362 242 ----------GVWKDVSSMF----------DEKWFIEVDLDTAMQ 266 (313)
Q Consensus 242 ----------~~~~~l~~l~----------~~~i~vtHd~~~~~~ 266 (313)
.+.+.+.... -..|+++||++++..
T Consensus 155 ~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~ 199 (218)
T 1z6g_A 155 LLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQ 199 (218)
T ss_dssp HHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHH
Confidence 2333343221 124799999999887
No 79
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.77 E-value=1.2e-21 Score=189.27 Aligned_cols=174 Identities=9% Similarity=-0.034 Sum_probs=122.0
Q ss_pred cEEEEccceEEcc-ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC-------
Q 021362 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------- 147 (313)
Q Consensus 76 ~~l~~~~l~~~y~-~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~------- 147 (313)
++++++++++.|+ +.. +|+++ |+|.+|++++|+||||||||||+++|+|+.+ |+.|.|.+.|+.
T Consensus 130 ~~l~~~~v~~~~~tg~~----vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~---~~~G~i~~~G~r~~ev~~~ 201 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVR----AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR---ADVIVVGLIGERGREVKDF 201 (438)
T ss_dssp CTTTSCCCCSBCCCSCH----HHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC---CSEEEEEEESCCHHHHHHH
T ss_pred CceEEeccceecCCCce----EEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC---CCeEEEEEeceecHHHHHH
Confidence 3688999999997 444 99999 9999999999999999999999999999999 999999999872
Q ss_pred ---------CCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcch
Q 021362 148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 148 ---------~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ 218 (313)
..+.++|++|++.... .++++.+|+.+....+.... . .+.... .....||+|| ||++
T Consensus 202 ~~~~~~~~~l~r~i~~v~q~~~~~~-~~~~v~~~~~~~ae~~~~~~-~----------~v~~~l-d~l~~lS~g~-qrvs 267 (438)
T 2dpy_A 202 IENILGPDGRARSVVIAAPADVSPL-LRMQGAAYATRIAEDFRDRG-Q----------HVLLIM-DSLTRYAMAQ-REIA 267 (438)
T ss_dssp HHTTTHHHHHHTEEEEEECTTSCHH-HHHHHHHHHHHHHHHHHTTT-C----------EEEEEE-ECHHHHHHHH-HHHH
T ss_pred HHhhccccccCceEEEEECCCCCHH-HHHHHHHHHHHHHHHHHhCC-C----------CHHHHH-HhHHHHHHHH-HHHH
Confidence 1245899999643322 24788888877654332100 0 000000 1245789999 9999
Q ss_pred hhhhhccCceEEEEcCC-ccccCh----hhHHHHHhhcc-----c-------eEEEEcChHHHHH-HHh----hcccccC
Q 021362 219 DDILVGLQHKVVIVDGN-YLFLDG----GVWKDVSSMFD-----E-------KWFIEVDLDTAMQ-RVL----KRHISTG 276 (313)
Q Consensus 219 ia~al~~~ar~Li~d~~-~lllDE----~~~~~l~~l~~-----~-------~i~vtHd~~~~~~-rv~----griv~~G 276 (313)
+| +.+|+ ...+|. .+.+.+.++.. . .++++||++.... +++ |+++.+|
T Consensus 268 lA----------l~~p~~t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~~~iad~v~~l~dG~Ivl~~ 337 (438)
T 2dpy_A 268 LA----------IGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSR 337 (438)
T ss_dssp HH----------TTCCCCSSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSCCHHHHHHHHHSSEEEEECH
T ss_pred HH----------hCCCcccccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCccchhhceEEEEeCcEEEEeC
Confidence 95 33444 778898 44555555544 1 2477899973322 443 7888777
Q ss_pred CchHH
Q 021362 277 KPPDV 281 (313)
Q Consensus 277 ~~~ev 281 (313)
++.++
T Consensus 338 ~~~~~ 342 (438)
T 2dpy_A 338 RLAEA 342 (438)
T ss_dssp HHHHT
T ss_pred CHHHc
Confidence 66554
No 80
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.77 E-value=5.9e-21 Score=166.23 Aligned_cols=146 Identities=16% Similarity=0.086 Sum_probs=81.0
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC----CCCeEEEEecCCCCCCcccCCccc
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----PPDVATVLPMDGFHLYLSQLDAME 171 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~----~~~~i~~v~qd~~~~~~~~ltv~e 171 (313)
+++| .+|++|++++|+||||||||||+|+|+|+++ ...+.+.+.+.. ..+.++|+||+...+. .+++.+
T Consensus 11 ~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~---~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~--~~~~~~ 83 (207)
T 1znw_A 11 TARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP---NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQ--QLIDQG 83 (207)
T ss_dssp ----------CCCEEEEECSTTSSHHHHHHHHHHHST---TCEECCCEESSCCCTTCCBTTTBEECCHHHHH--HHHHTT
T ss_pred CCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC---ceEEcccccccCCcccccCCCeeEecCHHHHH--HHHhcC
Confidence 7777 7899999999999999999999999999985 333332222211 1234789999854332 366666
Q ss_pred ChHHHH------HhcCCCCCccHHHHHHH------HHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCcc
Q 021362 172 DPKEAH------ARRGAPWTFNPLLLLNC------LKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 237 (313)
Q Consensus 172 ~~~~~~------~~~~~~~~~~~~~~~~~------l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~l 237 (313)
++.... ..++.+.....+++.+. ++.++. ..+.++.+|| +++.+|+++
T Consensus 84 ~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS------------------~l~~~p~~~ 145 (207)
T 1znw_A 84 ELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT------------------VFLAPPSWQ 145 (207)
T ss_dssp CEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE------------------EEEECSCHH
T ss_pred CceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE------------------EEEECCCHH
Confidence 653211 11222211112222222 222221 1122333444 788899999
Q ss_pred ccChh---------------hHHHHHhhcc----ceEEEEcChHHHHH
Q 021362 238 FLDGG---------------VWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 238 llDE~---------------~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
+|||. +++.++++.. ..+++|||++++..
T Consensus 146 ~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~ 193 (207)
T 1znw_A 146 DLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACA 193 (207)
T ss_dssp HHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHH
Confidence 99882 3444445432 24799999999976
No 81
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.76 E-value=2.6e-20 Score=171.82 Aligned_cols=156 Identities=9% Similarity=0.036 Sum_probs=110.7
Q ss_pred cceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCC-----------
Q 021362 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD----------- 150 (313)
Q Consensus 82 ~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~----------- 150 (313)
.+.+.|+... .++.+||++++|++++|+||||||||||+++|+|+++ |++|+|.+.|.+..+
T Consensus 79 ~l~~~l~~~~----~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~---~~~g~V~l~g~d~~r~~a~~ql~~~~ 151 (302)
T 3b9q_A 79 SVLEMLAKKN----SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK---NEGTKVLMAAGDTFRAAASDQLEIWA 151 (302)
T ss_dssp HHHHHHCC------CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH---HTTCCEEEECCCCSCHHHHHHHHHHH
T ss_pred HHHHHhCCcc----cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH---HcCCeEEEEeecccchhHHHHHHHHH
Confidence 3444454433 4567999999999999999999999999999999999 999999999877432
Q ss_pred ---eEEEEecCCC-CCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhc
Q 021362 151 ---VATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 151 ---~i~~v~qd~~-~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
.++|++|+.. ..+ .+++++++.++... +. + ..+++.++. ..+.++.+|| +||++||++++
T Consensus 152 ~~~~i~~v~q~~~~~~~--~~~v~e~l~~~~~~-~~----d----~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~ 217 (302)
T 3b9q_A 152 ERTGCEIVVAEGDKAKA--ATVLSKAVKRGKEE-GY----D----VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVS 217 (302)
T ss_dssp HHHTCEEECCC--CCCH--HHHHHHHHHHHHHT-TC----S----EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTST
T ss_pred HhcCceEEEecCCccCH--HHHHHHHHHHHHHc-CC----c----chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhc
Confidence 3789999854 332 47899998875431 11 1 012333442 2234555899 89999999999
Q ss_pred cCce--EEEEcCCccccChh-hHHHHHhh-ccceEEEEc
Q 021362 225 LQHK--VVIVDGNYLFLDGG-VWKDVSSM-FDEKWFIEV 259 (313)
Q Consensus 225 ~~ar--~Li~d~~~lllDE~-~~~~l~~l-~~~~i~vtH 259 (313)
.+++ +|++| ++..+|.. ..+.+.+. --.++++||
T Consensus 218 ~~P~e~lLvLD-ptsglD~~~~~~~~~~~~g~t~iiiTh 255 (302)
T 3b9q_A 218 GAPNEILLVLD-GNTGLNMLPQAREFNEVVGITGLILTK 255 (302)
T ss_dssp TCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCCCEEEEEC
T ss_pred cCCCeeEEEEe-CCCCcCHHHHHHHHHHhcCCCEEEEeC
Confidence 9999 99999 99999972 22222221 223589999
No 82
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.74 E-value=1.5e-18 Score=161.93 Aligned_cols=148 Identities=8% Similarity=-0.015 Sum_probs=102.3
Q ss_pred EccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCC
Q 021362 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDG 159 (313)
Q Consensus 80 ~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~ 159 (313)
++++++ | .. ++++++|.+++|++++|+||||||||||+++|+|+++ |++|.|.++|.+..
T Consensus 151 ~~~v~f-y--~~----~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~---~~~g~i~i~~~~e~---------- 210 (330)
T 2pt7_A 151 YNLLDN-K--EQ----AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP---KEERIISIEDTEEI---------- 210 (330)
T ss_dssp TTTSTT-H--HH----HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC---TTSCEEEEESSCCC----------
T ss_pred cCchhh-H--HH----HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCcEEEECCeecc----------
Confidence 556666 6 33 8999999999999999999999999999999999999 99999999875310
Q ss_pred CCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCcccc
Q 021362 160 FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 239 (313)
Q Consensus 160 ~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lll 239 (313)
.+.. ..+++.+ .. .|||+||++|++++..++++|++|++..
T Consensus 211 -~~~~----~~~~i~~------~~--------------------------ggg~~~r~~la~aL~~~p~ilildE~~~-- 251 (330)
T 2pt7_A 211 -VFKH----HKNYTQL------FF--------------------------GGNITSADCLKSCLRMRPDRIILGELRS-- 251 (330)
T ss_dssp -CCSS----CSSEEEE------EC--------------------------BTTBCHHHHHHHHTTSCCSEEEECCCCS--
T ss_pred -cccc----chhEEEE------Ee--------------------------CCChhHHHHHHHHhhhCCCEEEEcCCCh--
Confidence 0000 0000000 00 0899999999888888888888877764
Q ss_pred ChhhHHHHHhhccc---eEEEEcChHHHHH--HHh----hcccccCCchHHHHHHHH
Q 021362 240 DGGVWKDVSSMFDE---KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKWRIE 287 (313)
Q Consensus 240 DE~~~~~l~~l~~~---~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~~~~~ 287 (313)
.++++.|+.+... .++++|+.+.... |++ |.....+-+.+.+...+.
T Consensus 252 -~e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~~~~~~~~~~i~~~i~ 307 (330)
T 2pt7_A 252 -SEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNSAARNIKFESLIEGFK 307 (330)
T ss_dssp -THHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSGGGTTSCHHHHHHHHH
T ss_pred -HHHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCcccCCCCHHHHHHHHH
Confidence 3566667666432 4799999984433 555 433333445555554433
No 83
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.74 E-value=1.5e-18 Score=159.06 Aligned_cols=191 Identities=18% Similarity=0.216 Sum_probs=128.0
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHH------H
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA------H 177 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~------~ 177 (313)
-.++.++||+|++|||||||++.|.+++. +. |. . .+.+.+|+||+|++.. +.++|+.+. .
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~---~~-g~------~-~~~~~iv~~D~f~~~~---~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM---EK-YG------G-EKSIGYASIDDFYLTH---EDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH---HH-HG------G-GSCEEEEEGGGGBCCH---HHHHHHHHHTTTCGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh---hc-CC------C-CceEEEeccccccCCh---HHHHHHhccccccchh
Confidence 46789999999999999999999999997 42 20 0 1235556999887643 566776654 2
Q ss_pred HhcCCCCCccHHHHHHHHHHhhcC------CCc----cCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhh----
Q 021362 178 ARRGAPWTFNPLLLLNCLKNLRNQ------GSV----YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV---- 243 (313)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~l~~~------~~~----~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~---- 243 (313)
..+|.+.+.+.+.+.+.++.+..+ ... +-..+||||+||+++|.+...++++||+|+.++++|+..
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~~~~~ 173 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPILQGIE 173 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCCSCTT
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCccchhhh
Confidence 234567888888899999988754 212 233889999999998733333899999999999999742
Q ss_pred ------------HHH-------HHhhccce---EEEEc-ChHHHHHHHhhc--c-c-cc--CCchHHHHHHHHhcCCchh
Q 021362 244 ------------WKD-------VSSMFDEK---WFIEV-DLDTAMQRVLKR--H-I-ST--GKPPDVAKWRIEYNDRPNA 294 (313)
Q Consensus 244 ------------~~~-------l~~l~~~~---i~vtH-d~~~~~~rv~gr--i-v-~~--G~~~ev~~~~~~~~~~~~~ 294 (313)
.+. |.++.+.. |+++- +.+.+.++.+.| . + .. |...|-+. .|...++|++
T Consensus 174 ~~~~~~~~l~~~n~~l~~y~~~l~~~~D~~d~~I~vd~~~~~~i~rWRi~re~~l~~~r~~g~s~e~v~-~~~~~~~p~y 252 (290)
T 1odf_A 174 NNDLLTGDMVDVNAKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQVH-AFVDRYMPSY 252 (290)
T ss_dssp TCSSSCTTHHHHHHHHHHHHHHTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHHH-HHHHTTHHHH
T ss_pred hcccchhhHHHHHHHHHHHHHHHHhhhhhhcceEEEECCCHHHHHHHHHHHHHHHHHhccCCCCHHHHH-HHHHHhcchH
Confidence 222 23334555 99988 555555423432 2 2 23 66665554 4555777765
Q ss_pred H-Hhh-------hcccCccEEeec
Q 021362 295 E-LIM-------KSKKNADLVIKS 310 (313)
Q Consensus 295 ~-~i~-------~~~~~ad~ii~~ 310 (313)
+ |+. |.+ .||+|+..
T Consensus 253 ~~~~~~~~~~~~~~~-~adlvl~~ 275 (290)
T 1odf_A 253 KLYLNDFVRSESLGS-IATLTLGI 275 (290)
T ss_dssp HHHHHHHHHHTCSSS-SEEEEEEE
T ss_pred HHHhHHHHHhccCCC-CCCEEEEE
Confidence 5 443 444 79999864
No 84
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.74 E-value=7.7e-19 Score=149.84 Aligned_cols=139 Identities=12% Similarity=0.024 Sum_probs=90.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCC--CCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV--KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF 186 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~--~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~ 186 (313)
+++|+||||||||||+++|+|++.- .-.|...-.-. ...+.++|++|+. ++.+++. ...+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i--~~~g~~~~~~~~~~~~~~ig~~~~~~--------~~~~~~~---~~~~~~~-- 66 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK--RAIGFWTEEVRDPETKKRTGFRIITT--------EGKKKIF---SSKFFTS-- 66 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG--GEEEEEEEEEC------CCEEEEEET--------TCCEEEE---EETTCCC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--cCCCEEhhhhccccccceeEEEeecC--------cHHHHHH---HhhcCCc--
Confidence 6899999999999999999999851 11222110000 1234578888873 2333331 0111100
Q ss_pred cHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhh-----hccCceEEEEcC--CccccChhhHHHHHhhccc----eE
Q 021362 187 NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL-----VGLQHKVVIVDG--NYLFLDGGVWKDVSSMFDE----KW 255 (313)
Q Consensus 187 ~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~a-----l~~~ar~Li~d~--~~lllDE~~~~~l~~l~~~----~i 255 (313)
....++++.+|||||+||+++|++ ++.+++++++|+ ++..+|+...+.+.++.++ .+
T Consensus 67 ------------~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i 134 (178)
T 1ye8_A 67 ------------KKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVV 134 (178)
T ss_dssp ------------SSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEE
T ss_pred ------------cccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEE
Confidence 012345666999999999999996 999999999999 9999999776666666542 46
Q ss_pred EEEc---ChHHHHH---HHhhcccc
Q 021362 256 FIEV---DLDTAMQ---RVLKRHIS 274 (313)
Q Consensus 256 ~vtH---d~~~~~~---rv~griv~ 274 (313)
+++| |++++.. |--|++++
T Consensus 135 ~~~H~~h~~~~~~~i~~r~~~~i~~ 159 (178)
T 1ye8_A 135 ATIPIRDVHPLVKEIRRLPGAVLIE 159 (178)
T ss_dssp EECCSSCCSHHHHHHHTCTTCEEEE
T ss_pred EEEccCCCchHHHHHHhcCCcEEEE
Confidence 7874 8777765 11156664
No 85
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.72 E-value=1.7e-18 Score=163.75 Aligned_cols=62 Identities=13% Similarity=0.080 Sum_probs=51.9
Q ss_pred ccCCCCCCcCCCcchhhhhhc------cCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHH
Q 021362 204 VYAPSFDHGVGDPVEDDILVG------LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAM 265 (313)
Q Consensus 204 ~~~~~LSgG~kqRv~ia~al~------~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~ 265 (313)
+++.+|||||+||++||++++ .++++|++|+|+..||+ .+++.|.++.+. +++||||++++.
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~ 349 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSE 349 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHT
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHH
Confidence 466699999999999999998 79999999999999999 556666666543 469999999843
No 86
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.71 E-value=1.9e-19 Score=169.03 Aligned_cols=168 Identities=11% Similarity=0.061 Sum_probs=110.6
Q ss_pred cEEEEccceEEcc-ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~-~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
++++++++++.|+ +.. +|+++ |+|.+|+++||+||||||||||+++|+|+.+ |+.|.|.+.|++.
T Consensus 44 ~~i~~~~l~~~~~tg~~----ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~---~~~g~i~~~G~~~~ev~~~ 115 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVR----AIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS---ADIIVLALIGERGREVNEF 115 (347)
T ss_dssp CSTTCCCCCSEECCSCH----HHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC---CSEEEEEEESCCHHHHHHH
T ss_pred CCeeecccceecCCCCE----EEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC---CCEEEEEEecccHHHHHHH
Confidence 4688999999997 444 99999 9999999999999999999999999999999 9999988877541
Q ss_pred ---------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc-CCC-----ccCCCCCCcC
Q 021362 149 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-QGS-----VYAPSFDHGV 213 (313)
Q Consensus 149 ---------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~-----~~~~~LSgG~ 213 (313)
.+.+.+++|.+. ...+.+... .....+.+.+.. ..+ ..+..||+||
T Consensus 116 i~~~~~~~~~~~v~~~~~~~~-------~~~~r~~~~------------~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~ 176 (347)
T 2obl_A 116 LALLPQSTLSKCVLVVTTSDR-------PALERMKAA------------FTATTIAEYFRDQGKNVLLMMDSVTRYARAA 176 (347)
T ss_dssp HTTSCHHHHTTEEEEEECTTS-------CHHHHHHHH------------HHHHHHHHHHHTTTCEEEEEEETHHHHHHHH
T ss_pred HHhhhhhhhhceEEEEECCCC-------CHHHHHHHH------------HHHHHHHHHHHhccccHHHHHhhHHHHHHHH
Confidence 112444444321 111111000 000111111111 111 3456899999
Q ss_pred CCcchhhhhhccCceEEEEcCC-ccccCh----hhHHHHHhhcc--c--------eEEEEcChHHHHH-HHh----hccc
Q 021362 214 GDPVEDDILVGLQHKVVIVDGN-YLFLDG----GVWKDVSSMFD--E--------KWFIEVDLDTAMQ-RVL----KRHI 273 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~-~lllDE----~~~~~l~~l~~--~--------~i~vtHd~~~~~~-rv~----griv 273 (313)
||+++| +.+|+ ...+|. .+++.+.++.. . ++++|||+++... +++ |+++
T Consensus 177 -r~v~la----------l~~p~~t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~~~i~d~v~~i~dG~Iv 245 (347)
T 2obl_A 177 -RDVGLA----------SGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVNDPIGDEVRSILDGHIV 245 (347)
T ss_dssp -HHHHHH----------TTCCCCBTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCCCHHHHHHHHHCSEEEE
T ss_pred -HHHHHH----------cCCCCcccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCCChhhhheEEeeCcEEE
Confidence 899993 35677 589999 45555555542 1 2477899984433 544 8888
Q ss_pred ccCCchHH
Q 021362 274 STGKPPDV 281 (313)
Q Consensus 274 ~~G~~~ev 281 (313)
.+|.+.++
T Consensus 246 l~~~l~~~ 253 (347)
T 2obl_A 246 LTRELAEE 253 (347)
T ss_dssp BCHHHHTT
T ss_pred EeCCHHHc
Confidence 87766553
No 87
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.71 E-value=7.5e-19 Score=165.38 Aligned_cols=145 Identities=9% Similarity=0.021 Sum_probs=106.9
Q ss_pred cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCC--------------eEEEEecCCC-CC
Q 021362 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD--------------VATVLPMDGF-HL 162 (313)
Q Consensus 98 ~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~--------------~i~~v~qd~~-~~ 162 (313)
..+||++++|++++|+||||||||||+++|+|+++ |++|+|.+.|.+..+ .++|++|+.. ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~---~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK---NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH---HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc---ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 46899999999999999999999999999999999 999999999877432 3789999854 33
Q ss_pred CcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCce--EEEEcCCccc
Q 021362 163 YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLF 238 (313)
Q Consensus 163 ~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar--~Li~d~~~ll 238 (313)
+ .+++++++.++... +. +. .+++.++. ..+.++.+|| +||++||++++..+. +|++| ++..
T Consensus 225 p--~~tv~e~l~~~~~~-~~----d~----~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttg 289 (359)
T 2og2_A 225 A--ATVLSKAVKRGKEE-GY----DV----VLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 289 (359)
T ss_dssp H--HHHHHHHHHHHHHT-TC----SE----EEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG
T ss_pred h--hhhHHHHHHHHHhC-CC----HH----HHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC
Confidence 2 47889998876431 11 10 12233342 2234555889 899999999999999 99999 8999
Q ss_pred cChh-hHHHHHhh-ccceEEEEcC
Q 021362 239 LDGG-VWKDVSSM-FDEKWFIEVD 260 (313)
Q Consensus 239 lDE~-~~~~l~~l-~~~~i~vtHd 260 (313)
+|.. ..+.+.+. --.++++||.
T Consensus 290 lD~~~~~~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 290 LNMLPQAREFNEVVGITGLILTKL 313 (359)
T ss_dssp GGGHHHHHHHHHHTCCCEEEEESC
T ss_pred CCHHHHHHHHHHhcCCeEEEEecC
Confidence 9972 22222221 2245899993
No 88
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.68 E-value=3.2e-18 Score=157.66 Aligned_cols=156 Identities=12% Similarity=0.029 Sum_probs=78.6
Q ss_pred ccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHH-hcccCCCCceeecCCCCC-----CCeEEE
Q 021362 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR-INKIWPQKASSFDSQVKP-----PDVATV 154 (313)
Q Consensus 81 ~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl-~~~~~p~~G~i~~~g~~~-----~~~i~~ 154 (313)
+||++.|+++. ++++++|+| +|+||||||||||+++|.|. +. |++| +.++|.+. .+.+++
T Consensus 2 ~~l~~~~~~~~----~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~---~~~g-i~~~g~~~~~t~~~~~~~~ 67 (301)
T 2qnr_A 2 SNLPNQVHRKS----VKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY---PERV-ISGAAEKIERTVQIEASTV 67 (301)
T ss_dssp --------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEE
T ss_pred CCCcceECCEE----EEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc---CCCC-cccCCcccCCcceEeeEEE
Confidence 57899999877 999999998 99999999999999999997 66 8999 77666442 134677
Q ss_pred EecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcC
Q 021362 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (313)
Q Consensus 155 v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~ 234 (313)
++|...... .++++|++.++..... .+....+.+.+....+.++.++|||||||+.++++++ +|++++
T Consensus 68 ~~q~~~~~~--~ltv~Dt~g~~~~~~~------~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~lde 135 (301)
T 2qnr_A 68 EIEERGVKL--RLTVVDTPGYGDAINC------RDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHC----CFYFIS 135 (301)
T ss_dssp EEC---CCE--EEEEEEEC-----------------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEEC
T ss_pred EecCCCccc--CcchhhhhhhhhhcCc------HHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeec
Confidence 888644333 4899998876532210 0111112222222234567799999999999966652 888888
Q ss_pred Ccc-ccChhhHHHHHhhccc----eEEEEcChH
Q 021362 235 NYL-FLDGGVWKDVSSMFDE----KWFIEVDLD 262 (313)
Q Consensus 235 ~~l-llDE~~~~~l~~l~~~----~i~vtHd~~ 262 (313)
|.. .||+.-.+.++.+... .++.+||+.
T Consensus 136 Pt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 136 PFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SSSSSCCHHHHHHHHHHTTTSCEEEEECCGGGS
T ss_pred CcccCCCHHHHHHHHHHHhcCCEEEEEEeCCCC
Confidence 876 4898555666666543 247789974
No 89
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.65 E-value=1.4e-17 Score=139.33 Aligned_cols=87 Identities=18% Similarity=0.130 Sum_probs=71.2
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCe---EEE
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV---ATV 154 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~---i~~ 154 (313)
++.+++++.|++.. +++++||++++|++++|+||||||||||+|+|+|++ |++|+|.++|.+.... ..+
T Consensus 8 ~~~~~~~~~~g~~~----~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l----~~~G~V~~~g~~i~~~~~~~~~ 79 (158)
T 1htw_A 8 IPDEFSMLRFGKKF----AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI----GHQGNVKSPTYTLVEEYNIAGK 79 (158)
T ss_dssp ECSHHHHHHHHHHH----HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT----TCCSCCCCCTTTCEEEEEETTE
T ss_pred cCCHHHHHHHHHHH----HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC----CCCCeEEECCEeeeeeccCCCc
Confidence 44567889998766 999999999999999999999999999999999998 8999999999765211 126
Q ss_pred EecCCCCCCcccCCcccChHH
Q 021362 155 LPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 155 v~qd~~~~~~~~ltv~e~~~~ 175 (313)
++|+.. ++ .+|+.||+.+
T Consensus 80 ~~q~~~-l~--~ltv~e~l~~ 97 (158)
T 1htw_A 80 MIYHFD-LY--RLADPEELEF 97 (158)
T ss_dssp EEEEEE-CT--TCSCTTHHHH
T ss_pred ceeccc-cc--cCCcHHHHHH
Confidence 788743 33 3899999854
No 90
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.65 E-value=3.3e-17 Score=152.13 Aligned_cols=62 Identities=11% Similarity=-0.048 Sum_probs=49.5
Q ss_pred CccCCCCCCcCCCcchhhhhhc----cCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHH
Q 021362 203 SVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTA 264 (313)
Q Consensus 203 ~~~~~~LSgG~kqRv~ia~al~----~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~ 264 (313)
+..+.+||+|||||++||++++ .++++|++|+|+..||+ .+++.|+++.. ..+++||+.+..
T Consensus 214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~ 285 (322)
T 1e69_A 214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVM 285 (322)
T ss_dssp CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGG
T ss_pred cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHH
Confidence 3456699999999999999987 57899999999999999 45555666533 357999997543
No 91
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.62 E-value=2.9e-17 Score=172.78 Aligned_cols=147 Identities=15% Similarity=0.108 Sum_probs=103.6
Q ss_pred cEEEEcc-----ceEEc-cccccccccccccccccCC-------CcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceee
Q 021362 76 PVVEARC-----MDEVY-DALAQRLLPTSALASNVNV-------KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142 (313)
Q Consensus 76 ~~l~~~~-----l~~~y-~~~~~~~~~L~~vsl~i~~-------Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~ 142 (313)
++|++++ |++.| ++.. +++|++|++++ |++++|+||||||||||+|+| |++. +-
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~~~----v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~---~~----- 815 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGDDF----IPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA---VM----- 815 (1022)
T ss_dssp CCEEEEEECCCC------CCCC----CCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH---HH-----
T ss_pred ceEEEEeccccEEEEEecCCce----EeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH---HH-----
Confidence 4699999 99999 5545 99999999987 999999999999999999999 9986 31
Q ss_pred cCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhh
Q 021362 143 DSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 143 ~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~a 222 (313)
.+.++||||+.. .+++.+++.. ..|.. +. ......++|++|++ ++++++
T Consensus 816 ------aqiG~~Vpq~~~-----~l~v~d~I~~---rig~~-----d~-----------~~~~~stf~~em~~-~a~al~ 864 (1022)
T 2o8b_B 816 ------AQMGCYVPAEVC-----RLTPIDRVFT---RLGAS-----DR-----------IMSGESTFFVELSE-TASILM 864 (1022)
T ss_dssp ------HTTTCCEESSEE-----EECCCSBEEE---ECC-------------------------CHHHHHHHH-HHHHHH
T ss_pred ------hheeEEeccCcC-----CCCHHHHHHH---HcCCH-----HH-----------HhhchhhhHHHHHH-HHHHHH
Confidence 122348999742 3678887632 11211 00 01123466777664 899999
Q ss_pred hccCceEEEEcCCccccCh-----hhHHHHHhhccc----eEEEEcChHHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDG-----GVWKDVSSMFDE----KWFIEVDLDTAMQ 266 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE-----~~~~~l~~l~~~----~i~vtHd~~~~~~ 266 (313)
++.++.++++|++.-.+|. .++..|+.+.+. ++|+|||++++..
T Consensus 865 la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~ 917 (1022)
T 2o8b_B 865 HATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVED 917 (1022)
T ss_dssp HCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHH
T ss_pred hCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHH
Confidence 9999999999999999997 246666666533 4799999999876
No 92
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.60 E-value=2.5e-17 Score=162.61 Aligned_cols=157 Identities=9% Similarity=0.020 Sum_probs=98.5
Q ss_pred EEEEccceEEcccccccccccccccc-ccCCCcEEEEECCCCCcHHHHHHH--HHHHhcccCCCCceeecCCCCCC----
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALAS-NVNVKHIVGLAGPPGAGKSTLAAE--VVRRINKIWPQKASSFDSQVKPP---- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl-~i~~Geiv~l~GpNGsGKSTLlk~--l~gl~~~~~p~~G~i~~~g~~~~---- 149 (313)
+++.+++.+.+++.. +|++++| .|++|++++|+||||||||||+++ ++|+++ |++|.|+++|.+..
T Consensus 12 ~~~~~~~~~~~~g~~----~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~---~~~g~i~v~g~~~~~~~~ 84 (525)
T 1tf7_A 12 NSEHQAIAKMRTMIE----GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE---FDEPGVFVTFEETPQDII 84 (525)
T ss_dssp --CCSSCCEECCCCT----THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH---HCCCEEEEESSSCHHHHH
T ss_pred CccccccccccCCch----hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh---CCCCEEEEEEeCCHHHHH
Confidence 577778877776666 9999999 999999999999999999999999 789998 89999999997631
Q ss_pred ---CeEEEEecCCCCCCc-ccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhh
Q 021362 150 ---DVATVLPMDGFHLYL-SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 150 ---~~i~~v~qd~~~~~~-~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al 223 (313)
+.++|++|+...... ..+++.+ ... . .++++.++ ...++.+.+||+||+||+.|+...
T Consensus 85 ~~~~~~g~~~q~~~~~~~l~~~~~~~-----------~~~-~----~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t 148 (525)
T 1tf7_A 85 KNARSFGWDLAKLVDEGKLFILDASP-----------DPE-G----QEVVGGFDLSALIERINYAIQKYRARRVSIDSVT 148 (525)
T ss_dssp HHHGGGTCCHHHHHHTTSEEEEECCC-----------CSS-C----CSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECST
T ss_pred HHHHHcCCChHHhhccCcEEEEecCc-----------ccc-h----hhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHH
Confidence 346778886321000 0011111 000 0 01111121 112334557899998876663333
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTA 264 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~ 264 (313)
+..+. +-+|. .+++.++.+.+. .+++||+++++
T Consensus 149 ~~~~~--------~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 149 SVFQQ--------YDASSVVRRELFRLVARLKQIGATTVMTTERIEEY 188 (525)
T ss_dssp TTSTT--------TCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSS
T ss_pred HHHHh--------cCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCc
Confidence 22111 23465 445555554332 47999999885
No 93
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.60 E-value=2.8e-16 Score=138.27 Aligned_cols=160 Identities=16% Similarity=0.143 Sum_probs=98.1
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC--CCceeecCCCCCC----CeEEEEecCCCCCCcccCCc----cc
Q 021362 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKASSFDSQVKPP----DVATVLPMDGFHLYLSQLDA----ME 171 (313)
Q Consensus 102 l~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p--~~G~i~~~g~~~~----~~i~~v~qd~~~~~~~~ltv----~e 171 (313)
-..++|++++|+||||||||||+++|+|+++ | ..|+|.+.+.+.. +.++|+||+...+. .+++ .|
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~---p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~--~~~~~~~f~E 85 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQP---LYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFK--EMISRDAFLE 85 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSC---TTTEEECCCEECSCCCTTCCBTTTBEECCHHHHH--HHHHTTCEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCC---CCceEEEEEecCCCCCcccccCceEEECCHHHHH--HHHhcCHHHH
Confidence 4578999999999999999999999999997 6 6888888776532 24678888743322 2444 45
Q ss_pred ChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhc
Q 021362 172 DPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (313)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~ 251 (313)
++.+....+|. ..+.+.++++ ..+++++| +|......+.++.
T Consensus 86 ~~~~~~~~yg~----~~~~v~~~l~-----------------------------~G~illLD-----LD~~~~~~i~~~l 127 (219)
T 1s96_A 86 HAEVFGNYYGT----SREAIEQVLA-----------------------------TGVDVFLD-----IDWQGAQQIRQKM 127 (219)
T ss_dssp EEEETTEEEEE----EHHHHHHHHT-----------------------------TTCEEEEE-----CCHHHHHHHHHHC
T ss_pred HHHHHhccCCC----CHHHHHHHHh-----------------------------cCCeEEEE-----ECHHHHHHHHHHc
Confidence 44332212221 1222333322 14788888 8997777777776
Q ss_pred cc---eEEEEcChHHHHHHHhhcccccCCchHHHHHHHHhcCCchhHHhhhcccCccEEeecCC
Q 021362 252 DE---KWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSID 312 (313)
Q Consensus 252 ~~---~i~vtHd~~~~~~rv~griv~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~ad~ii~~~~ 312 (313)
.+ +++++||++++..|+.+|- .++++++. .++.... .+ .+.....|.+|.|.+
T Consensus 128 ~~~~tI~i~th~~~~l~~Rl~~rG--~~~~e~i~-~rl~~a~---~e--~~~~~~~d~~i~Nd~ 183 (219)
T 1s96_A 128 PHARSIFILPPSKIELDRRLRGRG--QDSEEVIA-KRMAQAV---AE--MSHYAEYDYLIVNDD 183 (219)
T ss_dssp TTCEEEEEECSSHHHHHHHHHTTS--CSCHHHHH-HHHHHHH---HH--HTTGGGSSEEEECSS
T ss_pred cCCEEEEEECCCHHHHHHHHHHcC--CCCHHHHH-HHHHHHH---HH--HhhccCCCEEEECcC
Confidence 54 3588999999988765332 44555553 3333211 11 123345677777754
No 94
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.59 E-value=5.4e-16 Score=139.99 Aligned_cols=128 Identities=13% Similarity=0.029 Sum_probs=86.9
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC-CceeecCCCCCCCeEEEE
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASSFDSQVKPPDVATVL 155 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~-~G~i~~~g~~~~~~i~~v 155 (313)
++++++|++. . +|+++| +++|++++|+||||||||||+++|+|+++ |+ +|+|.++|.+. .|+
T Consensus 5 ~~~l~~l~~~----~----vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~---~~~~G~I~~~g~~i----~~~ 67 (261)
T 2eyu_A 5 IPEFKKLGLP----D----KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYHIITIEDPI----EYV 67 (261)
T ss_dssp -CCGGGSSCC----T----HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH---HHCCCEEEEEESSC----CSC
T ss_pred CCChHHCCCH----H----HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC---CCCCCEEEEcCCcc----eee
Confidence 4667777643 3 899999 89999999999999999999999999998 87 99998877543 233
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCC
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 235 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~ 235 (313)
+++...+ +.+ ..++... .. -|++|++++..+++++++|++
T Consensus 68 ~~~~~~~------v~q------------------------~~~gl~~----~~------l~~~la~aL~~~p~illlDEp 107 (261)
T 2eyu_A 68 FKHKKSI------VNQ------------------------REVGEDT----KS------FADALRAALREDPDVIFVGEM 107 (261)
T ss_dssp CCCSSSE------EEE------------------------EEBTTTB----SC------HHHHHHHHHHHCCSEEEESCC
T ss_pred cCCccee------eeH------------------------HHhCCCH----HH------HHHHHHHHHhhCCCEEEeCCC
Confidence 3321100 000 0111100 11 278999999999999999998
Q ss_pred ccccChhhHHHHHhhcc---ceEEEEcChHHH
Q 021362 236 YLFLDGGVWKDVSSMFD---EKWFIEVDLDTA 264 (313)
Q Consensus 236 ~lllDE~~~~~l~~l~~---~~i~vtHd~~~~ 264 (313)
. |++....+.+... .+++++|+.+..
T Consensus 108 ~---D~~~~~~~l~~~~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 108 R---DLETVETALRAAETGHLVFGTLHTNTAI 136 (261)
T ss_dssp C---SHHHHHHHHHHHHTTCEEEEEECCSSHH
T ss_pred C---CHHHHHHHHHHHccCCEEEEEeCcchHH
Confidence 8 8744333222222 246899998743
No 95
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.54 E-value=3.3e-16 Score=144.41 Aligned_cols=136 Identities=13% Similarity=-0.025 Sum_probs=89.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC--------------CeEEEEecCCCCCCcccCCccc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--------------DVATVLPMDGFHLYLSQLDAME 171 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~--------------~~i~~v~qd~~~~~~~~ltv~e 171 (313)
+|++++|+||||||||||+++|+|+++ |++|+|.+.|.+.. ..++|++|+....+ .+++++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~---~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p--~~~v~~ 175 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ---NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDS--AALAYD 175 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCH--HHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCH--HHHHHH
Confidence 799999999999999999999999999 99999999987742 13788999854322 467888
Q ss_pred ChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHH
Q 021362 172 DPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWK 245 (313)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~ 245 (313)
++.++... +.. . .+++..+.. ....+.+|| +||++||++++..+..+++ .||. .+++
T Consensus 176 ~v~~~~~~-~~d----~----~llDt~G~~~~~~~~~~eLs---~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~ 238 (304)
T 1rj9_A 176 AVQAMKAR-GYD----L----LFVDTAGRLHTKHNLMEELK---KVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLE 238 (304)
T ss_dssp HHHHHHHH-TCS----E----EEECCCCCCTTCHHHHHHHH---HHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHH
T ss_pred HHHHHHhC-CCC----E----EEecCCCCCCchHHHHHHHH---HHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHH
Confidence 87765321 110 0 011111211 111223444 7999998888888873332 4454 3455
Q ss_pred HHHhhcc----ceEEEEcChHH
Q 021362 246 DVSSMFD----EKWFIEVDLDT 263 (313)
Q Consensus 246 ~l~~l~~----~~i~vtHd~~~ 263 (313)
.+..+.+ .++++||+...
T Consensus 239 ~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 239 QAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHHHcCCcEEEEECCccc
Confidence 5555432 35899998554
No 96
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.54 E-value=2e-15 Score=144.83 Aligned_cols=159 Identities=12% Similarity=0.014 Sum_probs=92.7
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCc--eeecCCCCC--CCeE
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA--SSFDSQVKP--PDVA 152 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G--~i~~~g~~~--~~~i 152 (313)
+|+++||++.|++.. ++++++|+| +|+|+||||||||+++|+|+.. ++.| .+.+++... ...+
T Consensus 11 ~l~~~~l~~~y~~~~----vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~---~~~~~~~~~~~~~~t~~~~~i 77 (418)
T 2qag_C 11 YVGFANLPNQVYRKS----VKRGFEFTL------MVVGESGLGKSTLINSLFLTDL---YSPEYPGPSHRIKKTVQVEQS 77 (418)
T ss_dssp ----CCCCCCTTTTT----CC-CCCEEE------EEECCTTSSHHHHHHHHTTCCC---CCCCCCSCC-----CCEEEEE
T ss_pred cEEEEecceeECCEE----EecCCCEEE------EEECCCCCcHHHHHHHHhCCCC---CCCCCCCcccCCccceeeeeE
Confidence 699999999998876 999999998 9999999999999999999986 5544 222222111 1246
Q ss_pred EEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCce---E
Q 021362 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK---V 229 (313)
Q Consensus 153 ~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar---~ 229 (313)
++++|+..... .++++|++.+.....+ ......+.+.++. .++.+++||++|+++++.+++ +
T Consensus 78 ~~v~q~~~~~~--~Ltv~Dt~g~~~~~~~---~~~~~~i~~~i~~----------~~~~~l~qr~~IaRal~~d~~~~vl 142 (418)
T 2qag_C 78 KVLIKEGGVQL--LLTIVDTPGFGDAVDN---SNCWQPVIDYIDS----------KFEDYLNAESRVNRRQMPDNRVQCC 142 (418)
T ss_dssp ECC------CE--EEEEEECC--------------CHHHHHHHHH----------HHHHHTTTSCC-CCCCCCCC-CCEE
T ss_pred EEEEecCCccc--ceeeeechhhhhhccc---hhhHHHHHHHHHH----------HHHHHHHHHHHHHHHhccCCCeeEE
Confidence 77777644332 4899999877543211 1111222222221 445678899999999999999 8
Q ss_pred EEEcCCc-cccChhhHHHHHhhccc--eEEEEcChHH
Q 021362 230 VIVDGNY-LFLDGGVWKDVSSMFDE--KWFIEVDLDT 263 (313)
Q Consensus 230 Li~d~~~-lllDE~~~~~l~~l~~~--~i~vtHd~~~ 263 (313)
|+++++. -.+|+.-.+.++.+... .|+|.|-.+.
T Consensus 143 L~ldePt~~~L~~~d~~~lk~L~~~v~iIlVinK~Dl 179 (418)
T 2qag_C 143 LYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADT 179 (418)
T ss_dssp EEECCC-CCSCCHHHHHHHHHHTTTSEEEEEEESTTS
T ss_pred EEEecCcccCCCHHHHHHHHHHhccCcEEEEEEcccC
Confidence 9999998 57887444555555443 3566665543
No 97
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.54 E-value=8.7e-17 Score=154.30 Aligned_cols=142 Identities=12% Similarity=0.029 Sum_probs=93.4
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCC------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD------ 150 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~------ 150 (313)
.++++++.+.|+... +|+++ +. .+|++++|+||||||||||+++|+|+++ |++|+|.+.+.+...
T Consensus 143 ~~~l~~Lg~~~~~~~----~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~---~~~g~I~~~ed~ie~~~~~~~ 213 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHD----NFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELN---SSERNILTVEDPIEFDIDGIG 213 (418)
T ss_dssp CCCGGGSCCCHHHHH----HHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHC---CTTSCEEEEESSCCSCCSSSE
T ss_pred CCCHHHcCCCHHHHH----HHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcC---CCCCEEEEecccchhccCCcc
Confidence 467889998887766 88988 64 8999999999999999999999999998 999999887755311
Q ss_pred ------eEEEEe---------cCCCCCCccc----CCcccChHHHHHhcCC-----CCCccHHHHHHHHHHhhcCCCccC
Q 021362 151 ------VATVLP---------MDGFHLYLSQ----LDAMEDPKEAHARRGA-----PWTFNPLLLLNCLKNLRNQGSVYA 206 (313)
Q Consensus 151 ------~i~~v~---------qd~~~~~~~~----ltv~e~~~~~~~~~~~-----~~~~~~~~~~~~l~~l~~~~~~~~ 206 (313)
.+++.+ |++..+.... .|+.+++.+.. .|. ..+.+...+.+.|..++......+
T Consensus 214 q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~--tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~~~ 291 (418)
T 1p9r_A 214 QTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASL--TGHLVMSTLHTNTAVGAVTRLRDMGIEPFLIS 291 (418)
T ss_dssp EEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHH--TTCEEEEEECCSSSHHHHHHHHHHTCCHHHHH
T ss_pred eEEEccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHH--hCCCcccccchhhHHHHHHHHHHcCCcHHHHH
Confidence 123333 5543221111 35555555442 221 012222334445666664433455
Q ss_pred CCCCCcCCCcchhhhhhccCceEEE
Q 021362 207 PSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 207 ~~LSgG~kqRv~ia~al~~~ar~Li 231 (313)
..|||||+|| |+++++.++++..
T Consensus 292 ~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 292 SSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHHHHHHHH--hhhhhcCCCCccC
Confidence 5999999999 8566665565544
No 98
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.53 E-value=8.5e-16 Score=154.17 Aligned_cols=153 Identities=8% Similarity=-0.021 Sum_probs=88.2
Q ss_pred EEEEccceEEcccccccccccccc----------ccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-CCceeecCC
Q 021362 77 VVEARCMDEVYDALAQRLLPTSAL----------ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFDSQ 145 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~v----------sl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-~~G~i~~~g 145 (313)
.++++||++.|+.... .+|+.+ +|+++. ++|+||||||||||+++|+|++. | ++|.|+++|
T Consensus 10 ~i~~~~l~~~~~~~~r--~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~---P~~sG~vt~~g 81 (608)
T 3szr_A 10 SVAENNLCSQYEEKVR--PCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVAL---PRGSGIVTRCP 81 (608)
T ss_dssp ----------CHHHHH--HHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC----------CCCSC
T ss_pred hhhhhhhhHHHHHHHH--HHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCC---CCCCCeEEEcC
Confidence 5889999999975321 133333 355554 99999999999999999999987 8 799999988
Q ss_pred CC-----------CCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCC
Q 021362 146 VK-----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVG 214 (313)
Q Consensus 146 ~~-----------~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~k 214 (313)
.+ ....++|++|+...++ .+++.+|+.+.....+.. -.+..+
T Consensus 82 ~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~--~~tv~e~i~~~~~~~~~~-------------------------~~~~s~ 134 (608)
T 3szr_A 82 LVLKLKKLVNEDKWRGKVSYQDYEIEISD--ASEVEKEINKAQNAIAGE-------------------------GMGISH 134 (608)
T ss_dssp EEEEEEECSSSSCCEEEESCC---CCCCC--HHHHHTTHHHHHHHHHCS-------------------------SSCCCS
T ss_pred EEEEEecCCccccceeEEeeecccccCCC--HHHHHHHHHHHHHHhcCC-------------------------ccccch
Confidence 65 1235888999854333 368888887653321100 012234
Q ss_pred CcchhhhhhccCceEEEEcCC------ccccCh----hhHHHHHhhccc-----eEEEEcChHHH
Q 021362 215 DPVEDDILVGLQHKVVIVDGN------YLFLDG----GVWKDVSSMFDE-----KWFIEVDLDTA 264 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~------~lllDE----~~~~~l~~l~~~-----~i~vtHd~~~~ 264 (313)
+++.++.+....+.++++|+| +..+|+ .+++.+.++... .++++||++.+
T Consensus 135 ~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a 199 (608)
T 3szr_A 135 ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA 199 (608)
T ss_dssp CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT
T ss_pred HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc
Confidence 566666666667899999999 888888 455555564332 24899998844
No 99
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.52 E-value=3.1e-15 Score=153.16 Aligned_cols=126 Identities=17% Similarity=0.118 Sum_probs=86.0
Q ss_pred ccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChH
Q 021362 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (313)
Q Consensus 95 ~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~ 174 (313)
.+++|+||+ |++++|+||||||||||+|+|+|+... ++.|.+... ....+++++| .+. .+++.+|+.
T Consensus 567 ~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~--~~~G~~vpa---~~~~i~~v~~---i~~--~~~~~d~l~ 633 (765)
T 1ewq_A 567 FVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL--AQVGSFVPA---EEAHLPLFDG---IYT--RIGASDDLA 633 (765)
T ss_dssp CCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH--HTTTCCBSS---SEEEECCCSE---EEE--ECCC-----
T ss_pred eEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh--cccCceeeh---hccceeeHHH---hhc--cCCHHHHHH
Confidence 389999999 999999999999999999999998631 577765321 1123444433 111 245555542
Q ss_pred HHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhh--ccCceEEEEcCC---ccccChh-----hH
Q 021362 175 EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGN---YLFLDGG-----VW 244 (313)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al--~~~ar~Li~d~~---~lllDE~-----~~ 244 (313)
. .+|+||++++.++.++ +.++.++++|++ +..+|.. ++
T Consensus 634 ~--------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~ 681 (765)
T 1ewq_A 634 G--------------------------------GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVA 681 (765)
T ss_dssp ---------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred h--------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHH
Confidence 2 2467888888888888 889999999999 8888862 33
Q ss_pred HHHHhhccceEEEEcChHHHH
Q 021362 245 KDVSSMFDEKWFIEVDLDTAM 265 (313)
Q Consensus 245 ~~l~~l~~~~i~vtHd~~~~~ 265 (313)
+.|.+....++++|||.+++.
T Consensus 682 ~~L~~~g~~vl~~TH~~~l~~ 702 (765)
T 1ewq_A 682 EALHERRAYTLFATHYFELTA 702 (765)
T ss_dssp HHHHHHTCEEEEECCCHHHHT
T ss_pred HHHHhCCCEEEEEeCCHHHHH
Confidence 444442223579999988763
No 100
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.48 E-value=1.3e-14 Score=143.18 Aligned_cols=147 Identities=12% Similarity=0.046 Sum_probs=97.8
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEe
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~ 156 (313)
.+++++++..|++.. .+| +..+.+|++++|+||||||||||+++++|+.. |. |+ +.+.+.+
T Consensus 257 ~~~~~~l~~g~~~ld---~vL---~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~---~~-G~---------~vi~~~~ 317 (525)
T 1tf7_A 257 RSSNVRVSSGVVRLD---EMC---GGGFFKDSIILATGATGTGKTLLVSRFVENAC---AN-KE---------RAILFAY 317 (525)
T ss_dssp CCCCCEECCSCHHHH---HHT---TSSEESSCEEEEEECTTSSHHHHHHHHHHHHH---TT-TC---------CEEEEES
T ss_pred ccccceeecChHHHH---HHh---CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---hC-CC---------CEEEEEE
Confidence 356677766664311 033 44899999999999999999999999999997 64 43 1234555
Q ss_pred cCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccCceEEEEcC
Q 021362 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (313)
Q Consensus 157 qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~ 234 (313)
|+.. ..+.++ ....+. +. .++ ...+ ...+.++.+||+||+||+++|+++..++++|++|
T Consensus 318 ee~~------~~l~~~----~~~~g~----~~---~~~-~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD- 378 (525)
T 1tf7_A 318 EESR------AQLLRN----AYSWGM----DF---EEM-ERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID- 378 (525)
T ss_dssp SSCH------HHHHHH----HHTTSC----CH---HHH-HHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-
T ss_pred eCCH------HHHHHH----HHHcCC----CH---HHH-HhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-
Confidence 5531 011111 112222 11 122 2233 2344566799999999999999999999999999
Q ss_pred CccccChh-----hHHHHHhhc----cc---eEEEEcCh
Q 021362 235 NYLFLDGG-----VWKDVSSMF----DE---KWFIEVDL 261 (313)
Q Consensus 235 ~~lllDE~-----~~~~l~~l~----~~---~i~vtHd~ 261 (313)
++..||.. ..+.+.++. +. +++++||.
T Consensus 379 p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 379 SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 99999986 544444332 22 46999998
No 101
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.48 E-value=8.9e-16 Score=140.33 Aligned_cols=152 Identities=11% Similarity=-0.042 Sum_probs=87.6
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCc-eeecCCCCCCC-----eEEEEecCCCCCCcccCCc
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQVKPPD-----VATVLPMDGFHLYLSQLDA 169 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G-~i~~~g~~~~~-----~i~~v~qd~~~~~~~~ltv 169 (313)
+|+++++.+++|++++|+||||||||||++.|+|++. |++| .|.+.+.+... ++..+.++. .+..
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~---~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~------~~~~ 94 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG---TAMGKKVGLAMLEESVEETAEDLIGLHNRV------RLRQ 94 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH---HTSCCCEEEEESSSCHHHHHHHHHHHHTTC------CGGG
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH---HHcCCeEEEEeCcCCHHHHHHHHHHHHcCC------Chhh
Confidence 8999999999999999999999999999999999998 8877 55432221110 011111110 0111
Q ss_pred ccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcC-CCcchhhhhhccCceEEEEcCCcccc------Ch-
Q 021362 170 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGV-GDPVEDDILVGLQHKVVIVDGNYLFL------DG- 241 (313)
Q Consensus 170 ~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~-kqRv~ia~al~~~ar~Li~d~~~lll------DE- 241 (313)
.+++.... .......+.+.++++.........+..+|.++ +|++. ++++..++++|++|++..++ |.
T Consensus 95 ~~~l~~~~----~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~ 169 (296)
T 1cr0_A 95 SDSLKREI----IENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDER 169 (296)
T ss_dssp CHHHHHHH----HHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------C
T ss_pred ccccccCC----CCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHH
Confidence 12221110 00011111222232221211122224677777 66666 88899999999999999854 33
Q ss_pred ----hhHHHHHhhccc----eEEEEcCh
Q 021362 242 ----GVWKDVSSMFDE----KWFIEVDL 261 (313)
Q Consensus 242 ----~~~~~l~~l~~~----~i~vtHd~ 261 (313)
.+.+.|+++.++ +|+++|+.
T Consensus 170 ~~~~~i~~~L~~la~~~~~~vi~vsh~~ 197 (296)
T 1cr0_A 170 KMIDNLMTKLKGFAKSTGVVLVVICHLK 197 (296)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEEecC
Confidence 355556665432 46999996
No 102
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.47 E-value=5.8e-15 Score=130.60 Aligned_cols=61 Identities=20% Similarity=0.184 Sum_probs=44.3
Q ss_pred EEEEccceEEccccccccccccccc-cccCCCcEEEEECCCCCcHHHHHHHHH--HHhcccCCCCceeecCCCC
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALA-SNVNVKHIVGLAGPPGAGKSTLAAEVV--RRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vs-l~i~~Geiv~l~GpNGsGKSTLlk~l~--gl~~~~~p~~G~i~~~g~~ 147 (313)
++++++++..|.. |+.+- =.|++|++++|+||||||||||+++|+ |++. +..|.+++.+..
T Consensus 6 ~~~~~~i~tg~~~-------lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~---~~~~~~~~~~~~ 69 (251)
T 2ehv_A 6 YQPVRRVKSGIPG-------FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE---YGEPGVFVTLEE 69 (251)
T ss_dssp --CCCEECCSCTT-------TGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHH---HCCCEEEEESSS
T ss_pred ccccceeecCCHh-------HHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---CCCeEEEEEccC
Confidence 5667777666653 33331 179999999999999999999999999 7755 666766666543
No 103
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.46 E-value=9.4e-15 Score=125.64 Aligned_cols=142 Identities=13% Similarity=0.029 Sum_probs=89.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC------CCCeEEEEecCCCCCCcccCCcccChHHHHHhc
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~------~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~ 180 (313)
|++++|+||||||||||+++|+|++ +++| |.++|.. ..+.++|++|+.. . . .+++. ..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~----~~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g--~---~~~l~----~~ 64 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL----KSSG-VPVDGFYTEEVRQGGRRIGFDVVTLS--G--T---RGPLS----RV 64 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH----HHTT-CCCEEEECCEEETTSSEEEEEEEETT--S--C---EEEEE----EC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc----ccCC-EEEcCEecchhHhhhceEEEEEEecc--c--c---eehhh----cc
Confidence 7899999999999999999999999 4678 8887743 2456889998741 1 1 12211 01
Q ss_pred CCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcch-hhh---hhccCceEEEEcC--CccccChhhHHHHHhhccc-
Q 021362 181 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVE-DDI---LVGLQHKVVIVDG--NYLFLDGGVWKDVSSMFDE- 253 (313)
Q Consensus 181 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~-ia~---al~~~ar~Li~d~--~~lllDE~~~~~l~~l~~~- 253 (313)
....... .-......+...+|+||++++. +.+ |++.++++|++|+ ++-.+|+..++.|.++.+.
T Consensus 65 ~~~~~~~---------~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~ 135 (189)
T 2i3b_A 65 GLEPPPG---------KRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP 135 (189)
T ss_dssp CCCCCSS---------SCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS
T ss_pred cccCCcc---------ccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCC
Confidence 1110000 0000112233468999998884 343 4677788888888 7777787888888888753
Q ss_pred -e-EE--EE--cCh--HHHHHHHh----hcccc
Q 021362 254 -K-WF--IE--VDL--DTAMQRVL----KRHIS 274 (313)
Q Consensus 254 -~-i~--vt--Hd~--~~~~~rv~----griv~ 274 (313)
. ++ ++ ||. .++. |+. |+++.
T Consensus 136 ~~~ilgti~vsh~~~~~~vd-~i~~~~~~~i~~ 167 (189)
T 2i3b_A 136 GTIILGTIPVPKGKPLALVE-EIRNRKDVKVFN 167 (189)
T ss_dssp SCCEEEECCCCCSSCCTTHH-HHHTTCCSEEEE
T ss_pred CcEEEEEeecCCCCchHHHH-HHeecCCcEEEE
Confidence 2 33 34 886 3333 443 56664
No 104
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.43 E-value=5.6e-15 Score=153.56 Aligned_cols=130 Identities=12% Similarity=0.073 Sum_probs=84.0
Q ss_pred ccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChH
Q 021362 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (313)
Q Consensus 95 ~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~ 174 (313)
.+++|++|++++|++++|+||||||||||+|+|+++.-- +..|. +++..... +.+.+.+
T Consensus 661 ~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~--aq~g~-------------~vpa~~~~-----i~~~d~i- 719 (918)
T 3thx_B 661 YVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM--AQIGS-------------YVPAEEAT-----IGIVDGI- 719 (918)
T ss_dssp SCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH--HHHTC-------------CBSSSEEE-----EECCSEE-
T ss_pred eecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH--hhcCc-------------cccchhhh-----hhHHHHH-
Confidence 389999999999999999999999999999999887530 11111 11111000 0000100
Q ss_pred HHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hhH-HHH
Q 021362 175 EAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVW-KDV 247 (313)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~-~~l 247 (313)
+..++ .........||+||+|++.++++ +.++.++++|++...+|. .+. ..+
T Consensus 720 --------------------~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il 778 (918)
T 3thx_B 720 --------------------FTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATL 778 (918)
T ss_dssp --------------------EEEC----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred --------------------HHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 00111 11122345889999999999877 788999999999999998 232 444
Q ss_pred Hhhcc----ceEEEEcChHHHHH
Q 021362 248 SSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 248 ~~l~~----~~i~vtHd~~~~~~ 266 (313)
..+.+ .++|+|||++.+..
T Consensus 779 ~~L~~~~g~tvl~vTH~~el~~l 801 (918)
T 3thx_B 779 EYFIRDVKSLTLFVTHYPPVCEL 801 (918)
T ss_dssp HHHHHTTCCEEEEECSCGGGGGH
T ss_pred HHHHHhcCCeEEEEeCcHHHHHH
Confidence 44432 24799999987754
No 105
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.42 E-value=5.6e-15 Score=138.70 Aligned_cols=117 Identities=13% Similarity=-0.019 Sum_probs=74.2
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecC-CCC----CCCeEEEEecCCCCCCcccCCcc
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS-QVK----PPDVATVLPMDGFHLYLSQLDAM 170 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~-g~~----~~~~i~~v~qd~~~~~~~~ltv~ 170 (313)
-++++++.+ +|++++|+||||||||||+|+|+|+... |+.|+|.+. |.. ....+++++|+.+.+. ..++.
T Consensus 205 gl~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~--~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~d--tpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNE--ILTNDVSNVSGLGQHTTTAARLYHFPHGGDVID--SPGVR 279 (358)
T ss_dssp THHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSC--CCCC-------------CCCEEEECTTSCEEEE--CHHHH
T ss_pred CHHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccccc--cccCCccccCCCCccceEEEEEEEECCCCEecC--cccHH
Confidence 356666654 7999999999999999999999998742 688999876 532 3456888888864332 34566
Q ss_pred cChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhh
Q 021362 171 EDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 171 e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al 223 (313)
++. ..+.+.......+.++++.++. ..+....+|| ||+||+++|.++
T Consensus 280 e~~-----l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 280 EFG-----LWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp TCC-----CCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred Hhh-----hcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 642 1122211222334566666663 3566777999 999999996543
No 106
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.41 E-value=4.1e-14 Score=121.85 Aligned_cols=157 Identities=11% Similarity=0.007 Sum_probs=78.5
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh-----cccCCCCceeecCCCC-CC
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI-----NKIWPQKASSFDSQVK-PP 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~-----~~~~p~~G~i~~~g~~-~~ 149 (313)
.+|+++|+++.|+. . ++++ |.+.+|+.++|+|+||||||||++.|+|.. . |+.|.+.+.+.- ..
T Consensus 2 ~~l~~~~~~~~~~~-~----~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~---~~~G~~~~~~~~~~~ 71 (210)
T 1pui_A 2 TNLNYQQTHFVMSA-P----DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTS---KTPGRTQLINLFEVA 71 (210)
T ss_dssp ---------CEEEE-S----SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC----------------CCEEEEEEE
T ss_pred cchhhhhhhheeec-C----CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCcccccc---CCCccceeeEEEEec
Confidence 36899999999973 4 7887 999999999999999999999999999987 6 888876542210 00
Q ss_pred CeEEEEecCCCCCCcccCCccc----ChHHHHHh-cC-----------CCCCccHHHHHHHHHHhhcC---CCccCCCCC
Q 021362 150 DVATVLPMDGFHLYLSQLDAME----DPKEAHAR-RG-----------APWTFNPLLLLNCLKNLRNQ---GSVYAPSFD 210 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e----~~~~~~~~-~~-----------~~~~~~~~~~~~~l~~l~~~---~~~~~~~LS 210 (313)
....++...++..........+ .+...... .. .+.......+.++++..+.. ...+...+|
T Consensus 72 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s 151 (210)
T 1pui_A 72 DGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLA 151 (210)
T ss_dssp TTEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred CCEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCC
Confidence 0111111111100000000000 01111110 00 11112222344455444421 133556899
Q ss_pred CcCCCc-chhhhhhccCceEEEEcCCccccChh
Q 021362 211 HGVGDP-VEDDILVGLQHKVVIVDGNYLFLDGG 242 (313)
Q Consensus 211 gG~kqR-v~ia~al~~~ar~Li~d~~~lllDE~ 242 (313)
+||+|| +..+++++..+..++.+.++..+|..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~ 184 (210)
T 1pui_A 152 SGARKAQLNMVREAVLAFNGDVQVETFSSLKKQ 184 (210)
T ss_dssp HHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTB
T ss_pred chhHHHHHHHHHHHHHhcCCCCceEEEeecCCC
Confidence 999999 78888877777667778888888873
No 107
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.40 E-value=4.4e-14 Score=132.95 Aligned_cols=77 Identities=14% Similarity=-0.028 Sum_probs=58.4
Q ss_pred ccCC-CCCCcCCCcchhhhhhc---------cCceEEEEcCCccccCh----hhHHHHHhhccceEEEEcChHHHHHHHh
Q 021362 204 VYAP-SFDHGVGDPVEDDILVG---------LQHKVVIVDGNYLFLDG----GVWKDVSSMFDEKWFIEVDLDTAMQRVL 269 (313)
Q Consensus 204 ~~~~-~LSgG~kqRv~ia~al~---------~~ar~Li~d~~~lllDE----~~~~~l~~l~~~~i~vtHd~~~~~~rv~ 269 (313)
.++. .||+||+||++||++++ .++++|++|+++.-||+ .+++.|.++....|++||+ +....+++
T Consensus 260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~~~~~i~ 338 (359)
T 2o5v_A 260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-APGAALTL 338 (359)
T ss_dssp EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CTTCSEEE
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cccCCEEE
Confidence 3555 79999999999999999 89999999999999999 4555555554224577784 43111444
Q ss_pred ----hcccccCCchHH
Q 021362 270 ----KRHISTGKPPDV 281 (313)
Q Consensus 270 ----griv~~G~~~ev 281 (313)
|+++..|+++++
T Consensus 339 ~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 339 RAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEETTEEEECCCTTTS
T ss_pred EEECCEEEecCCHHHH
Confidence 899888988775
No 108
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.40 E-value=3.2e-15 Score=130.62 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=28.6
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.|++|++++|+||||||||||+++|+|+..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 689999999999999999999999999876
No 109
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.38 E-value=1.1e-13 Score=130.32 Aligned_cols=63 Identities=21% Similarity=0.242 Sum_probs=53.7
Q ss_pred EEccceEE---ccccccccccc---------cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCC
Q 021362 79 EARCMDEV---YDALAQRLLPT---------SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 79 ~~~~l~~~---y~~~~~~~~~L---------~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~ 146 (313)
+++++++. |+.... .+| +++||.+++|++++|+||||||||||+++|+|+++ |++|.|.++|.
T Consensus 137 ~f~~v~f~~~~Y~~~~~--~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~---~~~g~I~ie~~ 211 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQ--ELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP---FDQRLITIEDV 211 (361)
T ss_dssp TTSCCCCSCSCCCHHHH--HHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC---TTSCEEEEESS
T ss_pred CcCccccccccccchhH--HHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC---CCceEEEECCc
Confidence 56788877 753111 144 99999999999999999999999999999999999 99999999874
No 110
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.38 E-value=1.4e-13 Score=126.57 Aligned_cols=114 Identities=11% Similarity=-0.036 Sum_probs=77.1
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeec---CCCCCC--------CeEEEEecCCCCC--Cc-ccC
Q 021362 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD---SQVKPP--------DVATVLPMDGFHL--YL-SQL 167 (313)
Q Consensus 102 l~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~---~g~~~~--------~~i~~v~qd~~~~--~~-~~l 167 (313)
+++..|++++|+||||||||||+|+|+ ++. |++|+|.+ +|++.. ..++|++|++... .. +.+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~---~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~l 235 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEE---LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFV 235 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCC---CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTS
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-Hhh---CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccC
Confidence 456789999999999999999999999 988 99999999 786532 1378999986432 11 347
Q ss_pred CcccCh--HHH----H--HhcC-CCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhh
Q 021362 168 DAMEDP--KEA----H--ARRG-APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 168 tv~e~~--~~~----~--~~~~-~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia 220 (313)
|+ +|+ .++ + ...+ .+..+...++.++++.++.. .+.++..|||..+++++||
T Consensus 236 t~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~ 299 (302)
T 2yv5_A 236 KP-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELC 299 (302)
T ss_dssp CG-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHS
T ss_pred CH-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 88 777 333 1 1223 23334456788899988854 2446668998777778873
No 111
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.37 E-value=2e-13 Score=117.88 Aligned_cols=177 Identities=15% Similarity=0.208 Sum_probs=91.0
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccC--CcccChHHHHHhc
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL--DAMEDPKEAHARR 180 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~l--tv~e~~~~~~~~~ 180 (313)
...+|++++|+|+||||||||+++|+++++ +..|.+.+ +.+|.+....... ...++ +....
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~---~~~~~v~~-----------~~~d~~~~~~~~~~~~~~~~---~~~~~ 80 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR---EQGISVCV-----------FHMDDHIVERAKRYHTGNEE---WFEYY 80 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHH---HTTCCEEE-----------EEGGGGCCCHHHHSSSSSCH---HHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHh---hcCCeEEE-----------eccCcccCCHHHHHhcCCCC---ccCCC
Confidence 467899999999999999999999999997 66665543 3344332211000 00000 10000
Q ss_pred CCCCCccHHHHHHH-HHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEc
Q 021362 181 GAPWTFNPLLLLNC-LKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEV 259 (313)
Q Consensus 181 ~~~~~~~~~~~~~~-l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtH 259 (313)
+...+.+.+.+. +..+........+.+..-...+.. +........++++|+++++-. .+.++++..|+|+-
T Consensus 81 --~~~~d~~~l~~~v~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vIveg~~l~~~-----~~~~~~d~~i~v~~ 152 (201)
T 1rz3_A 81 --YLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSK-RTVYLSDSDMIMIEGVFLQRK-----EWRPFFDFVVYLDC 152 (201)
T ss_dssp --HTSSCHHHHHHHTGGGTTTCSEEEEEEEETTTTEEEE-EEEECTTCSEEEEEETTTTST-----TTGGGCSEEEEECC
T ss_pred --ccccCHHHHHHHHHHHHhcCCccccCceeccCCCCCC-ceEEeCCCcEEEEechhhccH-----HHHhhcCEEEEEeC
Confidence 123344444332 233322222333334433221111 112223467899999987643 24566778899999
Q ss_pred ChHHHHHHHhhcccccCCchHHHHHHHHhcCCchhH-Hhhhc--ccCccEEeecC
Q 021362 260 DLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAE-LIMKS--KKNADLVIKSI 311 (313)
Q Consensus 260 d~~~~~~rv~griv~~G~~~ev~~~~~~~~~~~~~~-~i~~~--~~~ad~ii~~~ 311 (313)
+.+....|++.|. ++ +..++...+.|..+ |+.+. +..||+||+|.
T Consensus 153 ~~~~~~~R~~~R~------~~-~~~~~~~~~~~~~~~y~~~~~~~~~AD~vI~N~ 200 (201)
T 1rz3_A 153 PREIRFARENDQV------KQ-NIQKFINRYWKAEDYYLETEEPIKRADVVFDMT 200 (201)
T ss_dssp C---------------------CHHHHHHHHHHHHHHHHHHHCHHHHCSEEEC--
T ss_pred CHHHHHHHHhcCC------HH-HHHHHHhheeHHHHHHhCCCCcHhhCcEEecCC
Confidence 9988887877664 22 33445445566666 65554 78999999874
No 112
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.37 E-value=9.2e-13 Score=123.84 Aligned_cols=117 Identities=12% Similarity=0.047 Sum_probs=75.6
Q ss_pred ccccccc-------ccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC-CceeecCCCCC----CCeEEEEecCCCCCC
Q 021362 96 PTSALAS-------NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASSFDSQVKP----PDVATVLPMDGFHLY 163 (313)
Q Consensus 96 ~L~~vsl-------~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~-~G~i~~~g~~~----~~~i~~v~qd~~~~~ 163 (313)
.|+++.+ .+.+|++++|+||||||||||+++|+|+++ |+ .|.|...+.+. ....+++.|...
T Consensus 105 ~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~---~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~--- 178 (356)
T 3jvv_A 105 TMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLN---NTKYHHILTIEDPIEFVHESKKCLVNQREV--- 178 (356)
T ss_dssp CTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHH---HHCCCEEEEEESSCCSCCCCSSSEEEEEEB---
T ss_pred CHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhccc---CCCCcEEEEccCcHHhhhhccccceeeeee---
Confidence 5666665 778899999999999999999999999998 76 45543221111 000111111100
Q ss_pred cccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhh
Q 021362 164 LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV 243 (313)
Q Consensus 164 ~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~ 243 (313)
+. . .++.. -+|++++..++++|++|++. |++.
T Consensus 179 -----------------~~-~-----------------------~~~~~----~~La~aL~~~PdvillDEp~---d~e~ 210 (356)
T 3jvv_A 179 -----------------HR-D-----------------------TLGFS----EALRSALREDPDIILVGEMR---DLET 210 (356)
T ss_dssp -----------------TT-T-----------------------BSCHH----HHHHHHTTSCCSEEEESCCC---SHHH
T ss_pred -----------------cc-c-----------------------cCCHH----HHHHHHhhhCcCEEecCCCC---CHHH
Confidence 00 0 00000 08888888888888888887 7777
Q ss_pred HHHHHhhccc---eEEEEcChHHHHH
Q 021362 244 WKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 244 ~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
++.+.+.... +++++|+.+.+..
T Consensus 211 ~~~~~~~~~~G~~vl~t~H~~~~~~~ 236 (356)
T 3jvv_A 211 IRLALTAAETGHLVFGTLHTTSAAKT 236 (356)
T ss_dssp HHHHHHHHHTTCEEEEEESCSSHHHH
T ss_pred HHHHHHHHhcCCEEEEEEccChHHHH
Confidence 7776666543 4699999998743
No 113
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.36 E-value=1.6e-12 Score=121.37 Aligned_cols=60 Identities=10% Similarity=0.087 Sum_probs=48.2
Q ss_pred ccCCCCCCcCCC------cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHH
Q 021362 204 VYAPSFDHGVGD------PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDT 263 (313)
Q Consensus 204 ~~~~~LSgG~kq------Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~ 263 (313)
+++.+||||||| |+++|++++.++++|++|+|+..||+ .+++.|.++... .+++|||.+.
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~ 316 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL 316 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGG
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHH
Confidence 456699999999 56778888889999999999999999 456666665543 5799999664
No 114
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.36 E-value=4.5e-13 Score=131.97 Aligned_cols=62 Identities=16% Similarity=0.055 Sum_probs=51.1
Q ss_pred cCCCC-CCcCCCcchhhhhhccCc--eEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH
Q 021362 205 YAPSF-DHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ 266 (313)
Q Consensus 205 ~~~~L-SgG~kqRv~ia~al~~~a--r~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~ 266 (313)
++.+| ||||+|||+||++++.++ ++|++|+|+..||. .+.+.|+++.+ .+|+||||++++..
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~ 463 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR 463 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHH
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHh
Confidence 34467 999999999999999999 99999999999998 45555555543 35799999998865
No 115
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.35 E-value=5.7e-14 Score=118.86 Aligned_cols=100 Identities=11% Similarity=-0.025 Sum_probs=61.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCC---CceeecCCCCCC------------CeEE----EEecCCCCCCcccCC
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASSFDSQVKPP------------DVAT----VLPMDGFHLYLSQLD 168 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~~~~p~---~G~i~~~g~~~~------------~~i~----~v~qd~~~~~~~~lt 168 (313)
++++|+|+||||||||+++|+|++. |+ .|.|.++|.+.. +.++ +++|+.+.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~---~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i----- 74 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR---ERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI----- 74 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH---HTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh---hcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE-----
Confidence 5899999999999999999999999 88 899999986521 1233 5555533221
Q ss_pred cccChHHHHHhcCCCCCccHHHHHHHHHH-hhcCCCccCC-CCCCcCCCcchhhhhhccCce
Q 021362 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKN-LRNQGSVYAP-SFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 169 v~e~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~-~LSgG~kqRv~ia~al~~~ar 228 (313)
.+ ........+.++++. +. ..+..+. .|||||+||++||+++..++.
T Consensus 75 -~~-----------~~~~~~a~l~~~i~~~l~-g~dt~i~EglSgGq~qri~lARall~~p~ 123 (171)
T 2f1r_A 75 -RR-----------VSEEEGNDLDWIYERYLS-DYDLVITEGFSKAGKDRIVVVKKPEEVEH 123 (171)
T ss_dssp -EE-----------CCHHHHTCHHHHHHHHTT-TCSEEEEESCGGGCCCEEEECSSGGGGGG
T ss_pred -ec-----------CChhhhhCHHHHHHhhCC-CCCEEEECCcCCCCCcEEEEEecccCCCc
Confidence 00 000001134455555 43 3333222 599999999999777766544
No 116
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.33 E-value=4.9e-14 Score=120.10 Aligned_cols=158 Identities=9% Similarity=-0.080 Sum_probs=79.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC--CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~--~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~ 184 (313)
|++++|+||||||||||+++|++ +.+|.+++++.+.. ..++++++.... ....++++++.+....+....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~------~~~g~~~i~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA------QLDNSAYIEGDIINHMVVGGYRPPWESD--ELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH------HSSSEEEEEHHHHHTTCCTTCCCGGGCH--HHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhc------ccCCeEEEcccchhhhhccccccCccch--hHHHHHHHHHHHHHHHHHhcC
Confidence 68999999999999999999987 55688887764321 122334443211 112355555554332210000
Q ss_pred -CccHHHH--HHHHHHhhcCCCccCCCC--CCcCCCcchhhhhhccCceEEEEcCCccc----cChhh---HHHHHhhcc
Q 021362 185 -TFNPLLL--LNCLKNLRNQGSVYAPSF--DHGVGDPVEDDILVGLQHKVVIVDGNYLF----LDGGV---WKDVSSMFD 252 (313)
Q Consensus 185 -~~~~~~~--~~~l~~l~~~~~~~~~~L--SgG~kqRv~ia~al~~~ar~Li~d~~~ll----lDE~~---~~~l~~l~~ 252 (313)
....+.+ ...++ .+..+ |+||+|++.++. +..+..+++.++.... +|+.. ++.+..+..
T Consensus 74 ~~~ild~~~~~~~~~--------~~~~~~~s~g~~~~~~~i~-L~~~~e~l~~R~~~r~~d~~ld~~~~~~~~~~~~~~~ 144 (189)
T 2bdt_A 74 NDVVLDYIAFPDEAE--------ALAQTVQAKVDDVEIRFII-LWTNREELLRRDALRKKDEQMGERCLELVEEFESKGI 144 (189)
T ss_dssp CEEEEESCCCHHHHH--------HHHHHHHHHCSSEEEEEEE-EECCHHHHHHHTTTSCC----CGGGGHHHHHHHHTTC
T ss_pred CcEEEeeccCHHHHH--------HHHHHHHhcccCCCeEEEE-EeCCHHHHHHHHHhccccccCCHHHHHHHHHHhhcCC
Confidence 0000000 00000 11233 889999988754 1112223333333333 34421 556665543
Q ss_pred c---eEEEEcC-hHHHHH---HHh--hcccccCCchHH
Q 021362 253 E---KWFIEVD-LDTAMQ---RVL--KRHISTGKPPDV 281 (313)
Q Consensus 253 ~---~i~vtHd-~~~~~~---rv~--griv~~G~~~ev 281 (313)
. .+.+||. ++.+.+ +++ |+++..|+++.+
T Consensus 145 ~~~~ii~tsh~~~~~~e~~~~~i~~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 145 DERYFYNTSHLQPTNLNDIVKNLKTNPRFIFCMAGDPL 182 (189)
T ss_dssp CTTSEEECSSSCGGGHHHHHHHHHHCGGGSCC------
T ss_pred CccEEEeCCCCChhhHHHHHHHHhhCCcEEEeecCCch
Confidence 2 3466887 666655 777 999999988665
No 117
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.33 E-value=2.5e-13 Score=141.54 Aligned_cols=148 Identities=10% Similarity=0.066 Sum_probs=85.8
Q ss_pred EEEEccceEEcccc-ccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 77 VVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 77 ~l~~~~l~~~y~~~-~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
.|++++...-+-.. .+...+++|++|++++|++++|+||||||||||+|+|+++.-- +..| .++
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~--aq~G-------------~~v 695 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLM--AQIG-------------CFV 695 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHH--HHHT-------------CCB
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHH--HhcC-------------Ccc
Confidence 45565554433211 0122388999999999999999999999999999999544310 2222 112
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhh--ccCceEEEEc
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVD 233 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al--~~~ar~Li~d 233 (313)
|++... +.+.+.+ +.+++.. +.....+|+|++++..++.++ +.++.++++|
T Consensus 696 pa~~~~-----~~~~d~i---------------------~~~ig~~-d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLD 748 (934)
T 3thx_A 696 PCESAE-----VSIVDCI---------------------LARVGAG-DSQLKGVSTFMAEMLETASILRSATKDSLIIID 748 (934)
T ss_dssp SEEEEE-----EECCSEE---------------------EEECC----------CHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred cccccc-----chHHHHH---------------------HHhcCch-hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEe
Confidence 211100 0000000 0011100 111235677777777777766 8889999999
Q ss_pred CCccccCh----hh-HHHHHhhcc----ceEEEEcChHHHHH
Q 021362 234 GNYLFLDG----GV-WKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 234 ~~~lllDE----~~-~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
++...+|. .+ +..+..+.+ .++|+|||.+.+..
T Consensus 749 Ep~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~l 790 (934)
T 3thx_A 749 ELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTAL 790 (934)
T ss_dssp SCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGG
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHH
Confidence 99999998 23 444455443 24799999887654
No 118
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.33 E-value=4.1e-12 Score=115.05 Aligned_cols=143 Identities=15% Similarity=0.103 Sum_probs=88.5
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--CCeEEEEecCCCCCCcccCCcccChHHHHHhc
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~ 180 (313)
.+++|++++|+||||||||||++.+++.+. .|.+++ |... ...+.|+..+.. . +.+.......
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~~~-g~~~~~~~~v~~~~~e~~--------~-~~~~~r~~~~ 90 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPDLL-EVGELPTGPVIYLPAEDP--------P-TAIHHRLHAL 90 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCCTT-CCCCCCCCCEEEEESSSC--------H-HHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCCcC-CCccCCCccEEEEECCCC--------H-HHHHHHHHHH
Confidence 478999999999999999999999999774 466644 4332 233555544321 1 1111011111
Q ss_pred CCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCcc--ccCh-------hhHHHHHh
Q 021362 181 GAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL--FLDG-------GVWKDVSS 249 (313)
Q Consensus 181 ~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~l--llDE-------~~~~~l~~ 249 (313)
+. ........++++.+.. ..+..+..||+|+.|++ ++++.+++++++|++.. .+|+ .++..|.+
T Consensus 91 g~--~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~ 165 (279)
T 1nlf_A 91 GA--HLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEA 165 (279)
T ss_dssp HT--TSCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHH
T ss_pred Hh--hcChhhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHH
Confidence 11 1233445566777662 34556779999997654 56677899999999998 6686 34555555
Q ss_pred hccc----eEEEEcChHHHH
Q 021362 250 MFDE----KWFIEVDLDTAM 265 (313)
Q Consensus 250 l~~~----~i~vtHd~~~~~ 265 (313)
+.++ +++++|+.....
T Consensus 166 l~~~~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 166 IAADTGCSIVFLHHASKGAA 185 (279)
T ss_dssp HHHHHCCEEEEEEEC-----
T ss_pred HHHHcCCEEEEEecCCCccc
Confidence 5432 469999987653
No 119
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.32 E-value=6.1e-15 Score=139.05 Aligned_cols=167 Identities=11% Similarity=0.045 Sum_probs=89.3
Q ss_pred cccccccccCC--CcEEEEECCCCCcHHHHHHHHHHHhcccCCCC----ceeecCCCCCCCeEEEEecCCCCCCcccCCc
Q 021362 96 PTSALASNVNV--KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK----ASSFDSQVKPPDVATVLPMDGFHLYLSQLDA 169 (313)
Q Consensus 96 ~L~~vsl~i~~--Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~----G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv 169 (313)
+.+.|+++|.+ |+.++|+||||||||||+++|+|+++ |++ |++++++.... .+ ..+.. ...
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~---~~~~~e~G~i~i~~~~~~-------~~-~~~~~--~~~ 223 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN---TTSAWEYGREFVFEKLGG-------DE-QAMQY--SDY 223 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT---CEEECCTTHHHHHHSSSS-------CT-TSSCT--TTH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC---CCcchhhHHHHHHhhcCC-------Cc-ccCCh--hHH
Confidence 45779999999 99999999999999999999999999 998 88876421000 00 00000 011
Q ss_pred ccChHHHHHhcCCCCCccHHHHHHHHHHhhc-CC---CccCCCCCCcCCCcchhhhhh-ccCceEEEEcC---Cc-----
Q 021362 170 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-QG---SVYAPSFDHGVGDPVEDDILV-GLQHKVVIVDG---NY----- 236 (313)
Q Consensus 170 ~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~---~~~~~~LSgG~kqRv~ia~al-~~~ar~Li~d~---~~----- 236 (313)
+++.+..... ........+.+.. .. +.....+|+|++|+..++.+. ..+++++++|+ ++
T Consensus 224 -~~I~~~~q~~-------~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~ 295 (365)
T 1lw7_A 224 -PQMALGHQRY-------IDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGL 295 (365)
T ss_dssp -HHHHHHHHHH-------HHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC------
T ss_pred -HHHHHHHHHH-------HHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCC
Confidence 2222211000 0000000011110 00 011224456677887776665 35788888775 33
Q ss_pred -cccCh----hhHHHHHhhcc----ceEEEEcCh-HHHHH---HHhhcccccCCchHHHH
Q 021362 237 -LFLDG----GVWKDVSSMFD----EKWFIEVDL-DTAMQ---RVLKRHISTGKPPDVAK 283 (313)
Q Consensus 237 -lllDE----~~~~~l~~l~~----~~i~vtHd~-~~~~~---rv~griv~~G~~~ev~~ 283 (313)
+.+|+ .+.+.|.++.. ..++++|.- ..... .++.+++..|.+.++..
T Consensus 296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~i~~i~~~l~~~~~~~~~~ 355 (365)
T 1lw7_A 296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEKVLNEEEISELQN 355 (365)
T ss_dssp -----CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHHHHHHHHTSCCCCSSCCC
T ss_pred cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHhcccchhHhhc
Confidence 56787 45555544432 347888752 22222 33366777777666533
No 120
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.32 E-value=6.5e-14 Score=137.62 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=46.4
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~ 147 (313)
+++++++.+++|++++|+||||||||||+++|+|+++ |++|.|.+.|..
T Consensus 249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~---~~~giitied~~ 297 (511)
T 2oap_1 249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP---PDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC---TTCCEEEEESSC
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC---CCCCEEEEcCcc
Confidence 7899999999999999999999999999999999999 999999998854
No 121
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.31 E-value=1.2e-12 Score=112.50 Aligned_cols=31 Identities=26% Similarity=0.564 Sum_probs=26.4
Q ss_pred ccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 101 sl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
|+++.+|++++|+||||||||||+++|+|++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 5778899999999999999999999999996
No 122
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.30 E-value=2.5e-13 Score=130.07 Aligned_cols=171 Identities=11% Similarity=0.043 Sum_probs=92.5
Q ss_pred EEEEccceEEccccccccccccccccccCCCcE--EEEECCCCCcHHHHHHHHHHHhcccCCCCceeecC--CCCCCCeE
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS--QVKPPDVA 152 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Gei--v~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~--g~~~~~~i 152 (313)
.|++++ ++.|++. .|+++||++++|++ ++|+||||||||||+|+|+|+.- .|..... .....+.+
T Consensus 16 ~l~~~~-~~~y~~~-----~L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~~~~~~~~~~~i 84 (427)
T 2qag_B 16 TVPLAG-HVGFDSL-----PDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPATHTQPGVQLQSN 84 (427)
T ss_dssp -CCCCC-CC-CC-------CHHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------CCSSCEEEEE
T ss_pred eEEEee-EEEECCe-----ecCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCCCCCccceEeeE
Confidence 477778 8999753 28999999999999 99999999999999999999841 1111100 00112358
Q ss_pred EEEecCCCCCCcccCCcccChHHHHHhcC-CCCCc----cHHHHHHHHHHh-hcC------CCccC-------CCCCCcC
Q 021362 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTF----NPLLLLNCLKNL-RNQ------GSVYA-------PSFDHGV 213 (313)
Q Consensus 153 ~~v~qd~~~~~~~~ltv~e~~~~~~~~~~-~~~~~----~~~~~~~~l~~l-~~~------~~~~~-------~~LSgG~ 213 (313)
+|++|+...++ .+|+.+|+.++..... ..+.. ....+.++|... +.. .+..+ ...+.|-
T Consensus 85 ~~v~Q~~~l~~--~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l 162 (427)
T 2qag_B 85 TYDLQESNVRL--KLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSL 162 (427)
T ss_dssp EEEEEC--CEE--EEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---
T ss_pred EEEeecCcccc--ccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCC
Confidence 99999855433 4899999865421100 00000 012233333332 211 11110 0111121
Q ss_pred CC-cchhhhhhccCceEEEEcCCccccCh----hhHHHHHh-hccce---EEEEcC
Q 021362 214 GD-PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSS-MFDEK---WFIEVD 260 (313)
Q Consensus 214 kq-Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~-l~~~~---i~vtHd 260 (313)
.. =+.++.++...+.+++++.+.-.+.+ .+.+.|++ +...+ ++++.|
T Consensus 163 ~~~Dieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 163 KSLDLVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp CHHHHHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CHHHHHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 11 15677788888999999998888866 44555554 43333 355544
No 123
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.30 E-value=3.1e-13 Score=125.77 Aligned_cols=70 Identities=14% Similarity=0.063 Sum_probs=54.8
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCC--------------eEEEEecCCCCCCcccCC
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD--------------VATVLPMDGFHLYLSQLD 168 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~--------------~i~~v~qd~~~~~~~~lt 168 (313)
..++|++++|+||||||||||+++|+|+++ |++|+|.+.|.+..+ .+.+++|+.... +.++
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~---~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~--p~~~ 199 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLK---NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGAD--PAAV 199 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCC--HHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCC--HHHH
Confidence 447899999999999999999999999999 999999998876432 144777764322 2467
Q ss_pred cccChHHHH
Q 021362 169 AMEDPKEAH 177 (313)
Q Consensus 169 v~e~~~~~~ 177 (313)
+++|+.++.
T Consensus 200 v~e~l~~~~ 208 (328)
T 3e70_C 200 AYDAIQHAK 208 (328)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 788877654
No 124
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.29 E-value=1.7e-13 Score=127.96 Aligned_cols=79 Identities=23% Similarity=0.229 Sum_probs=67.6
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
|.+|+++++++.|+... +|+++||++.+|++++|+||||||||||+++|+|++. |++|+|.+.+.+.
T Consensus 27 i~~ie~~~~~~~~~~~~----~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~---~~~g~v~i~~~d~~~~~~~ 99 (337)
T 2qm8_A 27 ITLAESRRADHRAAVRD----LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT---AAGHKVAVLAVDPSSTRTG 99 (337)
T ss_dssp HHHHTCSSHHHHHHHHH----HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH---HTTCCEEEEEECGGGGSSC
T ss_pred HHHHeeCCcccccChHH----HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh---hCCCEEEEEEEcCcccccc
Confidence 55799999999998766 9999999999999999999999999999999999999 9999998877542
Q ss_pred ------CCeEEEEecCCC
Q 021362 149 ------PDVATVLPMDGF 160 (313)
Q Consensus 149 ------~~~i~~v~qd~~ 160 (313)
...+++++|++.
T Consensus 100 ~~~~~~~~~i~~v~q~~~ 117 (337)
T 2qm8_A 100 GSILGDKTRMARLAIDRN 117 (337)
T ss_dssp CCSSCCGGGSTTGGGCTT
T ss_pred cchHHHhhhheeeccCcc
Confidence 123566777643
No 125
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.27 E-value=2.3e-13 Score=115.79 Aligned_cols=129 Identities=18% Similarity=0.103 Sum_probs=73.9
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------CCeEEEEecCCCCCCcccCCcccChHHH
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------~~~i~~v~qd~~~~~~~~ltv~e~~~~~ 176 (313)
.+++|++++|+||||||||||+++|+|. ++.|.|.+++.+. ...++|++|+.. ..+++.+++.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~-----~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~----~~~~v~~~l~~~ 75 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL-----PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ----QNRMIMQIAADV 75 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC-----SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH----HHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc-----cCCCeEEEcccchhhhhhcccccCCccchhh----hhHHHHHHHHHH
Confidence 4789999999999999999999999995 5689898887531 112344444321 125677776554
Q ss_pred HHhc---CCCCCccHHHHH-HHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhh
Q 021362 177 HARR---GAPWTFNPLLLL-NCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSM 250 (313)
Q Consensus 177 ~~~~---~~~~~~~~~~~~-~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l 250 (313)
.... +.....+. ... ..++.+.. .+..+..+|+|++|++.+++++..+ |+++ +|+...+.+.+.
T Consensus 76 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~ls~~~~~~v~~~R~~~r~-------~~~l-ld~~~~~~~~~~ 143 (191)
T 1zp6_A 76 AGRYAKEGYFVILDG-VVRPDWLPAFTA-LARPLHYIVLRTTAAEAIERCLDRG-------GDSL-SDPLVVADLHSQ 143 (191)
T ss_dssp HHHHHHTSCEEEECS-CCCTTTTHHHHT-TCSCEEEEEEECCHHHHHHHHHTTC-------TTSC-CCHHHHHHHHHH
T ss_pred HHHHhccCCeEEEec-cCcHHHHHHHHh-cCCCeEEEEecCCHHHHHHHHHhcC-------CCcc-CCHHHHHHHHHH
Confidence 3211 11000000 000 00111110 1223458999999999997777654 4443 577544444443
No 126
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.26 E-value=6.5e-14 Score=130.45 Aligned_cols=132 Identities=14% Similarity=0.055 Sum_probs=86.3
Q ss_pred EEEEccceEEccccccccccccccccccCCC-------cEEEEECCCCCcHHHHHHHHHHHh----cccCCCCceeecCC
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVK-------HIVGLAGPPGAGKSTLAAEVVRRI----NKIWPQKASSFDSQ 145 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~G-------eiv~l~GpNGsGKSTLlk~l~gl~----~~~~p~~G~i~~~g 145 (313)
+++.+++++.|++.. +++++++.+..| +.++|.||||+|||||+++|+|.+ . +++|.+..++
T Consensus 18 ~lr~~~l~~~~g~~~----~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~---~~sg~~~~~~ 90 (334)
T 1in4_A 18 FLRPKSLDEFIGQEN----VKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH---VTSGPVLVKQ 90 (334)
T ss_dssp TTSCSSGGGCCSCHH----HHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE---EEETTTCCSH
T ss_pred HcCCccHHHccCcHH----HHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEechHhcCH
Confidence 467789999998776 899999999876 899999999999999999999998 5 7788877654
Q ss_pred CC--------CCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCC----CCccHHHHHHHHHHhhc-CCCccCCCCCCc
Q 021362 146 VK--------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP----WTFNPLLLLNCLKNLRN-QGSVYAPSFDHG 212 (313)
Q Consensus 146 ~~--------~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~----~~~~~~~~~~~l~~l~~-~~~~~~~~LSgG 212 (313)
.+ ....+.++.+... +.. ++.+++......++.. .......+...++.+.. ....++..||+|
T Consensus 91 ~~l~~~~~~~~~~~v~~iDE~~~-l~~---~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~ 166 (334)
T 1in4_A 91 GDMAAILTSLERGDVLFIDEIHR-LNK---AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSP 166 (334)
T ss_dssp HHHHHHHHHCCTTCEEEEETGGG-CCH---HHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHH
T ss_pred HHHHHHHHHccCCCEEEEcchhh-cCH---HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHH
Confidence 32 1345777877633 221 4566654333332211 11112233334444442 244566799999
Q ss_pred CCCcchh
Q 021362 213 VGDPVED 219 (313)
Q Consensus 213 ~kqRv~i 219 (313)
++||+.+
T Consensus 167 l~sR~~l 173 (334)
T 1in4_A 167 LRSRFGI 173 (334)
T ss_dssp HHTTCSE
T ss_pred HHHhcCc
Confidence 9999977
No 127
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.26 E-value=2.9e-13 Score=126.99 Aligned_cols=118 Identities=16% Similarity=0.164 Sum_probs=80.2
Q ss_pred ccccc-ccccCCCcEEEEECCCCCcHHHHHHHHHHHh--cccCCCC----ce-eecCCCCC--CCeEEEEecCCCCCCcc
Q 021362 96 PTSAL-ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQK----AS-SFDSQVKP--PDVATVLPMDGFHLYLS 165 (313)
Q Consensus 96 ~L~~v-sl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~--~~~~p~~----G~-i~~~g~~~--~~~i~~v~qd~~~~~~~ 165 (313)
.|+.+ .+.|++|++++|+||||||||||++.++++. + |++ |. |++++.+. ++++++++|... +..
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~---~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~-~~~- 193 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLP---PEEGGLNGSVIWIDTENTFRPERIREIAQNRG-LDP- 193 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSC---GGGTSCSCEEEEEESSSCCCHHHHHHHHHTTT-CCH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccc---hhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcC-CCH-
Confidence 56665 6899999999999999999999999999998 5 666 57 78887664 244666777633 222
Q ss_pred cCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh
Q 021362 166 QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (313)
Q Consensus 166 ~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE 241 (313)
-++.+|+.+.. ........++++.+. ..+.+||+|| .++++|++|++..++|.
T Consensus 194 -~~v~~ni~~~~-------~~~~~~~~~~l~~~~----~~~~~lS~G~-----------~~~~llIlDs~ta~ld~ 246 (349)
T 1pzn_A 194 -DEVLKHIYVAR-------AFNSNHQMLLVQQAE----DKIKELLNTD-----------RPVKLLIVDSLTSHFRS 246 (349)
T ss_dssp -HHHGGGEEEEE-------CCSHHHHHHHHHHHH----HHHHHSSSSS-----------SCEEEEEEETSSTTHHH
T ss_pred -HHHhhCEEEEe-------cCChHHHHHHHHHHH----HHHHHhcccc-----------CCCCEEEEeCchHhhhh
Confidence 25666664421 011122223333321 2234689998 35899999999999986
No 128
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.26 E-value=3.9e-12 Score=123.70 Aligned_cols=48 Identities=25% Similarity=0.175 Sum_probs=46.6
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~ 147 (313)
+|+++||+|++ ++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~ 66 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI---PDLTLLNFRNTT 66 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC---CCTTTCCCCCTT
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECCEE
Confidence 89999999999 9999999999999999999999999 999999999976
No 129
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.25 E-value=1.9e-12 Score=125.84 Aligned_cols=77 Identities=16% Similarity=0.125 Sum_probs=63.6
Q ss_pred ccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC--------------CeEEEEecCCCCC
Q 021362 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--------------DVATVLPMDGFHL 162 (313)
Q Consensus 97 L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~--------------~~i~~v~qd~~~~ 162 (313)
-+++||++++|++++|+|+||||||||+++|+|+++ |++|+|.+.+.+.. ..++|++|+....
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~---~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE---QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh---hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 368999999999999999999999999999999999 99999999765532 1378999985433
Q ss_pred CcccCCcccChHHHHH
Q 021362 163 YLSQLDAMEDPKEAHA 178 (313)
Q Consensus 163 ~~~~ltv~e~~~~~~~ 178 (313)
+ .+++++|+.++..
T Consensus 360 p--~~tV~e~l~~a~~ 373 (503)
T 2yhs_A 360 S--ASVIFDAIQAAKA 373 (503)
T ss_dssp H--HHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHh
Confidence 2 4788999888754
No 130
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.24 E-value=6.9e-12 Score=109.13 Aligned_cols=142 Identities=7% Similarity=-0.013 Sum_probs=79.6
Q ss_pred ccccccc-ccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChH
Q 021362 96 PTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (313)
Q Consensus 96 ~L~~vsl-~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~ 174 (313)
.|+++.+ .+++|++++|+||||||||||++.|++... ++.|.+.+. ..+. +.. .+.
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~---~~~~~v~~~-----------~~~~--------~~~-~~~ 67 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL---RDGDPCIYV-----------TTEE--------SRD-SII 67 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH---HHTCCEEEE-----------ESSS--------CHH-HHH
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH---HCCCeEEEE-----------Eccc--------CHH-HHH
Confidence 7889888 899999999999999999999999999887 666655432 2221 000 000
Q ss_pred HHHHhcCCCCCccH-HH---HHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCce--EEEEcCCcccc--Ch----h
Q 021362 175 EAHARRGAPWTFNP-LL---LLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFL--DG----G 242 (313)
Q Consensus 175 ~~~~~~~~~~~~~~-~~---~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar--~Li~d~~~lll--DE----~ 242 (313)
......+....... .. +......++ ........|.++.++...+.+...+++ ++++|++..++ |+ .
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~ 145 (235)
T 2w0m_A 68 RQAKQFNWDFEEYIEKKLIIIDALMKEKE--DQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARK 145 (235)
T ss_dssp HHHHHTTCCCGGGBTTTEEEEECCC------CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHH
T ss_pred HHHHHhcchHHHHhhCCEEEEeccccccC--ceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHH
Confidence 00001111100000 00 000000000 001112346777666666555556788 99999999777 86 4
Q ss_pred hHHHHHhhccc----eEEEEcChH
Q 021362 243 VWKDVSSMFDE----KWFIEVDLD 262 (313)
Q Consensus 243 ~~~~l~~l~~~----~i~vtHd~~ 262 (313)
+++.|+++.++ .++++|+..
T Consensus 146 ~~~~l~~~~~~~~~~vi~~~h~~~ 169 (235)
T 2w0m_A 146 ISYYLKRVLNKWNFTIYATSQYAI 169 (235)
T ss_dssp HHHHHHHHHHHTTEEEEEEEC---
T ss_pred HHHHHHHHHHhCCCeEEEEeccCc
Confidence 55566655432 469999984
No 131
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.23 E-value=8.1e-14 Score=126.49 Aligned_cols=119 Identities=15% Similarity=0.014 Sum_probs=74.9
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCC--------eEEEEecCCCCCCcccC
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD--------VATVLPMDGFHLYLSQL 167 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~--------~i~~v~qd~~~~~~~~l 167 (313)
+++++++.+++| ++|.||||||||||+++|+|.+. + |.+.++|.+... .++++||...... +.+
T Consensus 35 ~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~---~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~-p~i 106 (274)
T 2x8a_A 35 QFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG---L--NFISVKGPELLNMYVGESERAVRQVFQRAKNSA-PCV 106 (274)
T ss_dssp HHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT---C--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTC-SEE
T ss_pred HHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC---C--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcC-CCe
Confidence 899999999999 99999999999999999999986 5 688888765321 2455666521111 135
Q ss_pred CcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh
Q 021362 168 DAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (313)
Q Consensus 168 tv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE 241 (313)
++.|++......++.. .. .......+....+|||||+||+.+ +.++..+|+++ ||
T Consensus 107 ~~~Deid~~~~~r~~~------~~----~~~~~~~~~~l~~Lsgg~~~~~~i-------~ia~tn~p~~L--D~ 161 (274)
T 2x8a_A 107 IFFDEVDALCPRRSDR------ET----GASVRVVNQLLTEMDGLEARQQVF-------IMAATNRPDII--DP 161 (274)
T ss_dssp EEEETCTTTCC-------------------CTTHHHHHHHHHHTCCSTTCEE-------EEEEESCGGGS--CH
T ss_pred EeeehhhhhhcccCCC------cc----hHHHHHHHHHHHhhhcccccCCEE-------EEeecCChhhC--CH
Confidence 5666665432111100 00 000000122345799999999999 56666666543 64
No 132
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.22 E-value=5.8e-12 Score=129.65 Aligned_cols=130 Identities=12% Similarity=0.084 Sum_probs=77.2
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHH
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~ 175 (313)
+++|++|+ ++|++++|+||||||||||+|+|+|+... ...|...-. ....+++++| .+. .+++.+++..
T Consensus 597 vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~--~q~G~~vpa---~~~~i~~~~~---i~~--~~~~~d~l~~ 665 (800)
T 1wb9_A 597 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALM--AYIGSYVPA---QKVEIGPIDR---IFT--RVGAADDLAS 665 (800)
T ss_dssp CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHH--HTTTCCBSS---SEEEECCCCE---EEE--EEC-------
T ss_pred eeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHH--HhcCcccch---hcccceeHHH---HHh--hCCHHHHHHh
Confidence 89999999 99999999999999999999999998630 233321100 0011232222 111 2344444432
Q ss_pred HHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----h-hHHHHHhh
Q 021362 176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----G-VWKDVSSM 250 (313)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~-~~~~l~~l 250 (313)
. ...+|++|++ ++.+...+.++.++++|++...+|. . .+..+..+
T Consensus 666 ~-----------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l 715 (800)
T 1wb9_A 666 G-----------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENL 715 (800)
T ss_dssp ---------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHH
T ss_pred h-----------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHH
Confidence 1 1134444443 3333445678999999999888887 2 25556665
Q ss_pred cc----ceEEEEcChHHHHH
Q 021362 251 FD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 251 ~~----~~i~vtHd~~~~~~ 266 (313)
.+ .++++|||.+++..
T Consensus 716 ~~~~g~~vl~~TH~~el~~l 735 (800)
T 1wb9_A 716 ANKIKALTLFATHYFELTQL 735 (800)
T ss_dssp HHTTCCEEEEECSCGGGGGH
T ss_pred HhccCCeEEEEeCCHHHHHH
Confidence 44 24799999987643
No 133
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.22 E-value=5.3e-15 Score=137.07 Aligned_cols=137 Identities=11% Similarity=0.030 Sum_probs=79.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh--------cccCCCCceeecCCCCCCC-----------------------eEEEE-
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI--------NKIWPQKASSFDSQVKPPD-----------------------VATVL- 155 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~--------~~~~p~~G~i~~~g~~~~~-----------------------~i~~v- 155 (313)
++++|+|+||||||||+|.|.|+. . |+.|+|.++|..... .++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~---~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~ 81 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIE---NEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEEC---SSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEE---ecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHH
Confidence 689999999999999999999986 5 899999998854221 12223
Q ss_pred --ecCCCCCCcccCCcccChHHH--HHh-cCCCCCccHHHHH------HHHHHhhcC-CCccCCCCCCcCCCcchhhhhh
Q 021362 156 --PMDGFHLYLSQLDAMEDPKEA--HAR-RGAPWTFNPLLLL------NCLKNLRNQ-GSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 156 --~qd~~~~~~~~ltv~e~~~~~--~~~-~~~~~~~~~~~~~------~~l~~l~~~-~~~~~~~LSgG~kqRv~ia~al 223 (313)
+|+....+ ++++.|+..++ ... .... .+ .... .++..++.. ......+||+||+||+..
T Consensus 82 ~~~q~~~~~~--~~~v~E~~~l~~p~~~~~~~~--~~-~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~a---- 152 (318)
T 1nij_A 82 DNLDKGNIQF--DRLVIECTGMADPGPIIQTFF--SH-EVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA---- 152 (318)
T ss_dssp HHHHHTSCCC--SEEEEEEETTCCHHHHHHHHH--HS-HHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTC----
T ss_pred hHHhcCCCCC--CEEEEeCCCCCCHHHHHHHHh--cC-ccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhC----
Confidence 33322111 24555554321 000 0000 00 0000 000011100 111233789999999987
Q ss_pred ccCceEEEEcCCccccCh--hhHHHHHhhccc--eEEEEcCh
Q 021362 224 GLQHKVVIVDGNYLFLDG--GVWKDVSSMFDE--KWFIEVDL 261 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE--~~~~~l~~l~~~--~i~vtHd~ 261 (313)
+++++..++++ || .+.+.|+++... .++++|+.
T Consensus 153 ---d~ill~k~dl~--de~~~l~~~l~~l~~~~~ii~~sh~~ 189 (318)
T 1nij_A 153 ---DRILLTKTDVA--GEAEKLHERLARINARAPVYTVTHGD 189 (318)
T ss_dssp ---SEEEEECTTTC--SCTHHHHHHHHHHCSSSCEEECCSSC
T ss_pred ---CEEEEECcccC--CHHHHHHHHHHHhCCCCeEEEecccC
Confidence 77788888876 75 677777776532 46888953
No 134
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.19 E-value=5.7e-12 Score=115.76 Aligned_cols=103 Identities=13% Similarity=0.058 Sum_probs=66.1
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeec---CCCCCC--------CeEEEEecCCCCC--------
Q 021362 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD---SQVKPP--------DVATVLPMDGFHL-------- 162 (313)
Q Consensus 102 l~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~---~g~~~~--------~~i~~v~qd~~~~-------- 162 (313)
|++..|++++|+||||||||||+|+|+|+.+ |++|+|.+ +|++.. +.+++++|.+...
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~---~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~ 240 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK---LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIE 240 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC---CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSC
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccc---ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCC
Confidence 5677899999999999999999999999999 99999998 776532 2478999986421
Q ss_pred ------CcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCC
Q 021362 163 ------YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDH 211 (313)
Q Consensus 163 ------~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSg 211 (313)
..+++++ +|+.+.... ...+...++.++|+.++.. .+.++.+||.
T Consensus 241 ~~~~~~l~~~~~~-~n~~~~~~~---~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 241 PEELKHYFKEFGD-KQCFFSDCN---HVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp HHHHGGGSTTSSS-CCCSSTTCC---SSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc-ccCcCCCCc---CCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 1235788 988875211 1233456788889988853 2334446663
No 135
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.18 E-value=2e-13 Score=123.62 Aligned_cols=137 Identities=17% Similarity=0.059 Sum_probs=86.6
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
..+++++.+.|+... +++++++++++| ++|+||||+|||||+++|++.+. .|.+.+++.+.
T Consensus 49 ~~~l~~l~~~~~~~~----~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~ 117 (278)
T 1iy2_A 49 KEELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVG 117 (278)
T ss_dssp HHHHHHHHHHHHCHH----HHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHH
T ss_pred HHHHHHHHHHHHCHH----HHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHH
Confidence 355678888887665 899999999999 89999999999999999999873 67777765321
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCce
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar 228 (313)
...+.+++|...... +.+++.|++.......+...........+.+..+ ..+|||||+||+.+ +.
T Consensus 118 ~~~i~~~~~~~~~~~-~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~l-------l~~lsgg~~~~~~i-------~~ 182 (278)
T 1iy2_A 118 AARVRDLFETAKRHA-PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL-------LVEMDGFEKDTAIV-------VM 182 (278)
T ss_dssp HHHHHHHHHHHHTSC-SEEEEEETHHHHHCC--------CHHHHHHHHHH-------HHHHTTCCTTCCEE-------EE
T ss_pred HHHHHHHHHHHHhcC-CcEEehhhhHhhhcccccccCCcchHHHHHHHHH-------HHHHhCCCCCCCEE-------EE
Confidence 112445666532111 2367888885443221110000011112222221 23579999999999 77
Q ss_pred EEEEcCCccccCh
Q 021362 229 VVIVDGNYLFLDG 241 (313)
Q Consensus 229 ~Li~d~~~lllDE 241 (313)
++..+|++ +|+
T Consensus 183 a~t~~p~~--ld~ 193 (278)
T 1iy2_A 183 AATNRPDI--LDP 193 (278)
T ss_dssp EEESCTTS--SCH
T ss_pred EecCCchh--CCH
Confidence 77777765 675
No 136
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.17 E-value=2.2e-11 Score=115.09 Aligned_cols=45 Identities=24% Similarity=0.324 Sum_probs=39.2
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC-CceeecCC
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASSFDSQ 145 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~-~G~i~~~g 145 (313)
+|++++ +++|++++|+||||||||||+++|+|+++ |+ +|.|.+.+
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~---~~~~g~I~~~e 172 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYHIITIE 172 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH---HHSCCEEEEEE
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC---cCCCcEEEEec
Confidence 566654 88999999999999999999999999998 87 89886544
No 137
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.17 E-value=9e-13 Score=136.92 Aligned_cols=142 Identities=15% Similarity=0.091 Sum_probs=96.9
Q ss_pred HHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCc---------cHHHHHHHH
Q 021362 125 AEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF---------NPLLLLNCL 195 (313)
Q Consensus 125 k~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~---------~~~~~~~~l 195 (313)
.|..+.++ |..|+|.++|+++.. +. .+++.+++.+.. .......+ ...+..+.|
T Consensus 386 ~C~g~rl~---~~~~~V~i~G~~i~~-----------~~--~~~v~~~l~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~L 448 (916)
T 3pih_A 386 VCGGRRLN---REALSVKINGLNIHE-----------FT--ELSISEELEFLK-NLNLTEREREIVGELLKEIEKRLEFL 448 (916)
T ss_dssp TTCSCCBC---TTGGGEEETTEEHHH-----------HH--HSBHHHHHHHHH-SCCCCTTTTTTHHHHHHHHHHHHHHH
T ss_pred hcccccCC---hHhcCcEECCccHHH-----------hh--hCCHHHHHHHHH-hccCcHHHHHHHHhhHHHHHHHHHHH
Confidence 44445555 777778777754211 11 256666666532 22221111 112334566
Q ss_pred HHhhcC---CCccCCCCCCcCCCcchhhhhhccCce--EEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHH
Q 021362 196 KNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDT 263 (313)
Q Consensus 196 ~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~ar--~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~ 263 (313)
..++.. .++.+.+|||||+|||+||++|+.++. +|++|+|+..||+ .+++.|+++.+. +|+||||+++
T Consensus 449 ~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~ 528 (916)
T 3pih_A 449 VDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEV 528 (916)
T ss_dssp HTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHH
T ss_pred HHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 667742 467788999999999999999998766 9999999999999 566667766653 4799999998
Q ss_pred HHH--HHh----------hcccccCCchHHHH
Q 021362 264 AMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 264 ~~~--rv~----------griv~~G~~~ev~~ 283 (313)
+.. |++ |++++.|+++++..
T Consensus 529 ~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 529 IRNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp HHTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred HHhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 766 443 68899999998864
No 138
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.16 E-value=1.5e-13 Score=122.20 Aligned_cols=123 Identities=13% Similarity=0.031 Sum_probs=76.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHH---HHhcccCCCCceeecCCCCCCC----eEEEEecCCCCCCcccCCcccChHHHHH
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVV---RRINKIWPQKASSFDSQVKPPD----VATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~---gl~~~~~p~~G~i~~~g~~~~~----~i~~v~qd~~~~~~~~ltv~e~~~~~~~ 178 (313)
++++++|+||||||||||+++|+ |+.. |+.|++.+++.+... .+..++|++...+ ..++.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~---~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~v~~~l~~~l~ 100 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH---LSSGHFLRENIKASTEVGEMAKQYIEKSLLVP--DHVITRLMMSELE 100 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC---EEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCC--HHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE---ecHHHHHHHHHhcCChHHHHHHHHHHcCCCCC--HHHHHHHHHHHHH
Confidence 47999999999999999999999 8887 999999887643211 1233455543332 3567777766432
Q ss_pred --------hcCCCCCccHHHHHHHHH--Hhh--------------cCCCccCCCCCCcCCCcchhhhhh-ccCceEEEEc
Q 021362 179 --------RRGAPWTFNPLLLLNCLK--NLR--------------NQGSVYAPSFDHGVGDPVEDDILV-GLQHKVVIVD 233 (313)
Q Consensus 179 --------~~~~~~~~~~~~~~~~l~--~l~--------------~~~~~~~~~LSgG~kqRv~ia~al-~~~ar~Li~d 233 (313)
..+.+.. ...+..+.. .++ ...++.+.+||| |+ +++ +.+++++++|
T Consensus 101 ~~~~~~~il~g~~~~--~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD 171 (246)
T 2bbw_A 101 NRRGQHWLLDGFPRT--LGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGID 171 (246)
T ss_dssp TCTTSCEEEESCCCS--HHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBC
T ss_pred hcCCCeEEEECCCCC--HHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccc
Confidence 1222322 122222211 111 112445668998 65 444 6778888888
Q ss_pred ----CCccccChh
Q 021362 234 ----GNYLFLDGG 242 (313)
Q Consensus 234 ----~~~lllDE~ 242 (313)
+|+..+|+.
T Consensus 172 ~~~~EP~~~ld~~ 184 (246)
T 2bbw_A 172 DVTGEPLVQQEDD 184 (246)
T ss_dssp TTTCCBCBCCGGG
T ss_pred cccccccccCCCC
Confidence 888888873
No 139
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.14 E-value=1.1e-12 Score=120.78 Aligned_cols=111 Identities=12% Similarity=0.058 Sum_probs=63.0
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeec---CCCCCCC------e-EEEEecCCCCCCcc--cCCc
Q 021362 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD---SQVKPPD------V-ATVLPMDGFHLYLS--QLDA 169 (313)
Q Consensus 102 l~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~---~g~~~~~------~-i~~v~qd~~~~~~~--~ltv 169 (313)
+++.+|++++|+||||||||||+|+|+|+.. |+.|+|.+ .|+.... . +++++|.+...... .+++
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~---~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG---LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc---ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 7889999999999999999999999999999 99999998 6654321 1 68899986443211 3567
Q ss_pred ccChH--HH-HH-h------cC-CCCCccHHHHHHHHHHhhcCC--CccCCCCCCcCCCc
Q 021362 170 MEDPK--EA-HA-R------RG-APWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDP 216 (313)
Q Consensus 170 ~e~~~--~~-~~-~------~~-~~~~~~~~~~~~~l~~l~~~~--~~~~~~LSgG~kqR 216 (313)
+++. ++ .. . .+ ....+....+.++++.++... ...+..|+.|++||
T Consensus 245 -e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 245 -EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR 303 (307)
T ss_dssp -HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence 7773 32 11 1 12 122333456788888887543 33455666776663
No 140
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.13 E-value=3.6e-13 Score=120.05 Aligned_cols=137 Identities=17% Similarity=0.059 Sum_probs=84.3
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
..+++++.+.|+... +++++++++++| ++|+||||+|||||+++|++... .|.+.+++.+.
T Consensus 25 ~~~l~~l~~~~~~~~----~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~ 93 (254)
T 1ixz_A 25 KEELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVG 93 (254)
T ss_dssp HHHHHHHHHHHHCHH----HHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHH
T ss_pred HHHHHHHHHHHHCHH----HHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHH
Confidence 356788888887655 899999999999 89999999999999999999873 57777665321
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCce
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar 228 (313)
.+.+.+++|...... +.+.+.|++.......+...........+.+..+ ..+||||++||+.+ +.
T Consensus 94 ~~~i~~~~~~~~~~~-~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~l-------l~~l~g~~~~~~~i-------~~ 158 (254)
T 1ixz_A 94 AARVRDLFETAKRHA-PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL-------LVEMDGFEKDTAIV-------VM 158 (254)
T ss_dssp HHHHHHHHHHHTTSS-SEEEEEETHHHHHC---------CHHHHHHHHHH-------HHHHHTCCTTCCEE-------EE
T ss_pred HHHHHHHHHHHHhcC-CeEEEehhhhhhhcccCccccccchHHHHHHHHH-------HHHHhCCCCCCCEE-------EE
Confidence 112345566532111 2367788885433221110000011111222211 12578999999999 55
Q ss_pred EEEEcCCccccCh
Q 021362 229 VVIVDGNYLFLDG 241 (313)
Q Consensus 229 ~Li~d~~~lllDE 241 (313)
++..+|.. +|+
T Consensus 159 a~t~~p~~--ld~ 169 (254)
T 1ixz_A 159 AATNRPDI--LDP 169 (254)
T ss_dssp EEESCGGG--SCG
T ss_pred EccCCchh--CCH
Confidence 66666544 565
No 141
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.08 E-value=2.4e-10 Score=98.51 Aligned_cols=136 Identities=15% Similarity=0.278 Sum_probs=78.5
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcC
Q 021362 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181 (313)
Q Consensus 102 l~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~ 181 (313)
-++++|.+++|+|++|||||||++.|++.+. .+.++++|++......++..+. ......
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~------------------~~~~i~~D~~~~~~~~~~~~~~---~~~~~~ 74 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP------------------NCSVISQDDFFKPESEIETDKN---GFLQYD 74 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST------------------TEEEEEGGGGBCCGGGSCBCTT---SCBCCS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC------------------CcEEEeCCccccCHhHhhcccc---CCChhH
Confidence 3678999999999999999999999999762 2678999976543211111000 000001
Q ss_pred CCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcCh
Q 021362 182 APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDL 261 (313)
Q Consensus 182 ~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~ 261 (313)
.....+...+.+.+..+-.. ...+.++.|+++ ..+.++++.|+.++.-++. +.+..+..++++-+.
T Consensus 75 ~~~~~~~~~l~~~i~~~l~~--~~~~~~~~~~~~--------~~~~~~vi~eg~~~~~~~~----~~~~~d~~i~l~~~~ 140 (207)
T 2qt1_A 75 VLEALNMEKMMSAISCWMES--ARHSVVSTDQES--------AEEIPILIIEGFLLFNYKP----LDTIWNRSYFLTIPY 140 (207)
T ss_dssp SGGGBCHHHHHHHHHHHHHH--HTTSSCCC-------------CCCCEEEEECTTCTTCGG----GTTTCSEEEEEECCH
T ss_pred HHHHhHHHHHHHHHHHHHhC--CCCCCcCCCeee--------cCCCCEEEEeehHHcCcHH----HHHhcCeeEEEECCH
Confidence 11112333333333222110 012356666654 2246789999977665543 335667788999999
Q ss_pred HHHHHHHhhcc
Q 021362 262 DTAMQRVLKRH 272 (313)
Q Consensus 262 ~~~~~rv~gri 272 (313)
+....|+..|.
T Consensus 141 ~~~~~R~~~R~ 151 (207)
T 2qt1_A 141 EECKRRRSTRV 151 (207)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHcC
Confidence 98888776553
No 142
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.08 E-value=3.2e-11 Score=107.88 Aligned_cols=174 Identities=17% Similarity=0.174 Sum_probs=89.6
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHH---HHhcccCCCCceee--------cCCCCCC---------CeEEEEecCCCC---
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVV---RRINKIWPQKASSF--------DSQVKPP---------DVATVLPMDGFH--- 161 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~---gl~~~~~p~~G~i~--------~~g~~~~---------~~i~~v~qd~~~--- 161 (313)
++|++++|+|||||||||++++|+ |+.. +++|.++ .+|.+.. ..+++++|....
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~---~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL---LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQ 101 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE---EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc---CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCce
Confidence 789999999999999999999999 8777 9999998 7776542 136677764321
Q ss_pred CCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCC---ccc
Q 021362 162 LYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN---YLF 238 (313)
Q Consensus 162 ~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~---~ll 238 (313)
......++.+++.................+.+.+..+.. .++.+ .. ++.++. .++
T Consensus 102 ~~l~~~~v~~~i~~~~v~~~~s~~~~~~~vr~~l~~~~~-------~~a~~--------------~~-~V~~gr~~~~~v 159 (252)
T 4e22_A 102 VILEGEDVSNEIRTETVGNTASQAAAFPRVREALLRRQR-------AFREA--------------PG-LIADGRDMGTIV 159 (252)
T ss_dssp EEETTEECTTGGGSHHHHHHHHHHTTSHHHHHHHHHHHH-------TTCCS--------------SC-EEEEESSCCCCC
T ss_pred EEECCeehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-------HHhhC--------------CC-EEEEeceeceee
Confidence 001123455554321110000000011222333322210 11111 22 333332 223
Q ss_pred cChhhHHHHHhhccceEEEEcChHHHHHHHhhccccc--CCchHHHHHHHHhcCCchhH-HhhhcccCcc-EEeecCC
Q 021362 239 LDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST--GKPPDVAKWRIEYNDRPNAE-LIMKSKKNAD-LVIKSID 312 (313)
Q Consensus 239 lDE~~~~~l~~l~~~~i~vtHd~~~~~~rv~griv~~--G~~~ev~~~~~~~~~~~~~~-~i~~~~~~ad-~ii~~~~ 312 (313)
+++ .+..||++-++++..+|+..+.... +...+-+...+..++..... .+.|.+..+| ++|++..
T Consensus 160 ~~~---------~~~~ifl~A~~e~r~~R~~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~Idts~ 228 (252)
T 4e22_A 160 FPD---------APVKIFLDASSQERAHRRMLQLQERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDSTS 228 (252)
T ss_dssp STT---------CSEEEEEECCHHHHHHHHHHHHHHHTCCCCHHHHHHHHC------------CCCCCTTEEEEECSS
T ss_pred cCC---------CCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccccchhccCCeEEEECcC
Confidence 321 3446899999999888776433322 22334444455555555544 6777788888 8888753
No 143
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.07 E-value=9.3e-12 Score=109.87 Aligned_cols=57 Identities=19% Similarity=0.214 Sum_probs=42.4
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~ 148 (313)
.|+++|+...|+. +|++.+ ++++|+||||||||||+++|+|++. |++|.|.++|.+.
T Consensus 9 ~l~l~~~~~~~~~-----------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~---~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 9 SLTLINWNGFFAR-----------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI---PDLTLLHFRNTTE 65 (227)
T ss_dssp EEEEEEETTEEEE-----------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS---CCTTTC-------
T ss_pred EEEEEeeecccCC-----------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc---cCCCeEEECCEEc
Confidence 5888898776642 234445 8999999999999999999999999 9999999988653
No 144
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.03 E-value=3.3e-11 Score=124.97 Aligned_cols=116 Identities=17% Similarity=0.118 Sum_probs=86.1
Q ss_pred cCCcccChHHHHHhcCCCCC----------ccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCc--eEE
Q 021362 166 QLDAMEDPKEAHARRGAPWT----------FNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVV 230 (313)
Q Consensus 166 ~ltv~e~~~~~~~~~~~~~~----------~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~a--r~L 230 (313)
.+||.|++.|. ...+.+.. +..+++ +.|..+|.. .++.+.+|||||+|||+||.++..++ ++|
T Consensus 451 ~ltV~e~~~f~-e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~ll 528 (972)
T 2r6f_A 451 AMSVTEALAFF-DGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLY 528 (972)
T ss_dssp TSBHHHHHHHH-HHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEE
T ss_pred hCCHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEE
Confidence 37888888884 44444431 112233 346777743 57788899999999999999999874 899
Q ss_pred EEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH--HHh----------hcccccCCchHHHH
Q 021362 231 IVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 231 i~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~--rv~----------griv~~G~~~ev~~ 283 (313)
++|+|...||+ .+++.|+++.+. +|+|+||++++.. |++ |++++.|+++++..
T Consensus 529 ILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~ 600 (972)
T 2r6f_A 529 VLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 600 (972)
T ss_dssp EEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred EEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence 99999999998 566666666543 5799999998754 444 68889999888754
No 145
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.02 E-value=2.6e-09 Score=95.08 Aligned_cols=185 Identities=24% Similarity=0.361 Sum_probs=108.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHH---hcCC
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA---RRGA 182 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~---~~~~ 182 (313)
+.-+++|.|+.||||||+.+.|+..+.. + .++ .....+.++..|.++.. +. ...+..... .+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~--~-----~~d--~~~~~~~~i~~D~~~~~---~~-~~~~~~~~~g~~~f~~ 87 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQ--N-----EVD--YRQKQVVILSQDSFYRV---LT-SEQKAKALKGQFNFDH 87 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTG--G-----GSC--GGGCSEEEEEGGGGBCC---CC-HHHHHHHHTTCSCTTS
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhh--h-----ccc--ccCCceEEEecCccccc---cC-hhhhhhhccCCCCCCC
Confidence 3458999999999999999999986641 1 000 01233556888865421 11 111111110 1112
Q ss_pred CCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcChH
Q 021362 183 PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLD 262 (313)
Q Consensus 183 ~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~ 262 (313)
+..++.+.+.+.|+.+........+.|+.....++.-.. ......+++.|+.+++.++ .+.+.++..|+++.+.+
T Consensus 88 ~~~~d~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~-~~~~~~~vIveG~~~~~~~----~~~~~~d~vi~l~~~~e 162 (252)
T 1uj2_A 88 PDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETV-TVYPADVVLFEGILAFYSQ----EVRDLFQMKLFVDTDAD 162 (252)
T ss_dssp GGGBCHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEE-EECCCSEEEEECTTTTSSH----HHHHHCSEEEEEECCHH
T ss_pred cchhhHHHHHHHHHHHHcCCeeecCccccccccCCCcee-eeCCCcEEEEeeeccccCH----HHHHhcCeeEEEeCCHH
Confidence 344555666677777654333333333222222221000 0123568999998776664 34556778899999999
Q ss_pred HHHHHHhhcc-cccCCchHHHHHHHHhcCCchhH-HhhhcccCccEEe
Q 021362 263 TAMQRVLKRH-ISTGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVI 308 (313)
Q Consensus 263 ~~~~rv~gri-v~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~ad~ii 308 (313)
...+|+..|. ...|...+.+..+|...+.+..+ ++.+.+..||++|
T Consensus 163 ~~~~R~~~R~~~~rg~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI 210 (252)
T 1uj2_A 163 TRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVII 210 (252)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEE
T ss_pred HHHHHHHHHHHhhhCCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEE
Confidence 9988877553 34465556555667666655544 7778888999998
No 146
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.01 E-value=1.9e-09 Score=92.47 Aligned_cols=38 Identities=37% Similarity=0.407 Sum_probs=26.0
Q ss_pred ccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 95 ~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+++|+||++.+|++++|+|++||||||+.+.|++.+.
T Consensus 13 ~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 13 LGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp -----------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 38999999999999999999999999999999999885
No 147
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=99.00 E-value=2.8e-10 Score=95.93 Aligned_cols=114 Identities=10% Similarity=0.012 Sum_probs=68.4
Q ss_pred cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecC---------CC-----CCCCeEEEEecCCCCCC
Q 021362 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS---------QV-----KPPDVATVLPMDGFHLY 163 (313)
Q Consensus 98 ~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~---------g~-----~~~~~i~~v~qd~~~~~ 163 (313)
+++++++.+| +++|+||||||||||+++|.+++. +..|..... |. .....+.+++|++....
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~ 93 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG---GLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGF 93 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT---CCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc---CCcccccccccchheeecccccCCCCceEEEEEEEeCCCccc
Confidence 6788899999 999999999999999999999997 776643222 21 12235788888754322
Q ss_pred cc---cCCcccChHHH----HHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcch
Q 021362 164 LS---QLDAMEDPKEA----HARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 164 ~~---~ltv~e~~~~~----~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ 218 (313)
++ .+++...+... ....+ .......+.++++.++...+.. .-++.|+.+++.
T Consensus 94 ~~~~~~~~i~r~~~~~~~~~~~i~g--~~~~~~~~~~~l~~~~l~~~~~-~~~~qg~~~~l~ 152 (182)
T 3kta_A 94 PIDEDEVVIRRRVYPDGRSSYWLNG--RRATRSEILDILTAAMISPDGY-NIVLQGDITKFI 152 (182)
T ss_dssp SSSSSEEEEEEEECTTSCEEEEETT--EEECHHHHHHHHHHTTCCTTCT-TEECTTCTTHHH
T ss_pred ccCCcEEEEEEEEEeCCcEEEEECC--eEcCHHHHHHHHHHcCCCCCCC-EEEEcccHHHHH
Confidence 11 12332221100 00111 1123456777888777443322 346777776654
No 148
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.00 E-value=7.7e-10 Score=95.52 Aligned_cols=130 Identities=15% Similarity=0.057 Sum_probs=78.8
Q ss_pred ccccccc-ccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChH
Q 021362 96 PTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (313)
Q Consensus 96 ~L~~vsl-~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~ 174 (313)
.|+.+.. .+++|++++|+||||||||||++.|++ . +. ..+.|+..+.. .+. +.+.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~---~~------------~~v~~i~~~~~------~~~-~~~~ 63 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L---SG------------KKVAYVDTEGG------FSP-ERLV 63 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H---HC------------SEEEEEESSCC------CCH-HHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H---cC------------CcEEEEECCCC------CCH-HHHH
Confidence 6777765 799999999999999999999999999 3 22 23444544321 111 1111
Q ss_pred HHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCC--CcchhhhhhccC-ceEEEEcCCccccCh----------
Q 021362 175 EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVG--DPVEDDILVGLQ-HKVVIVDGNYLFLDG---------- 241 (313)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~k--qRv~ia~al~~~-ar~Li~d~~~lllDE---------- 241 (313)
......+. +.+ ++++.+ .+..++++++ |+++.+++++.. ++++++|++..++|.
T Consensus 64 ~~~~~~~~----~~~---~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~ 130 (220)
T 2cvh_A 64 QMAETRGL----NPE---EALSRF------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAE 130 (220)
T ss_dssp HHHHTTTC----CHH---HHHHHE------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHH
T ss_pred HHHHhcCC----ChH---HHhhcE------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHH
Confidence 11111111 111 222322 2335566664 466667777775 999999999999874
Q ss_pred --hhHHHHHhhccc----eEEEEcChH
Q 021362 242 --GVWKDVSSMFDE----KWFIEVDLD 262 (313)
Q Consensus 242 --~~~~~l~~l~~~----~i~vtHd~~ 262 (313)
.+++.|+++.++ .++++|...
T Consensus 131 ~~~~~~~L~~l~~~~~~~vi~~~h~~~ 157 (220)
T 2cvh_A 131 LSRQLQVLLWIARKHNIPVIVINQVHF 157 (220)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeeEEE
Confidence 133335555432 468888765
No 149
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.98 E-value=8e-11 Score=105.37 Aligned_cols=53 Identities=19% Similarity=0.289 Sum_probs=37.0
Q ss_pred cEEEEccc-eEEc-cccccccccccccccccCC---CcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 76 PVVEARCM-DEVY-DALAQRLLPTSALASNVNV---KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 76 ~~l~~~~l-~~~y-~~~~~~~~~L~~vsl~i~~---Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++|+++|+ ++.| ++.. +|+++||+|.+ |++++|+|++||||||++++|++.+.
T Consensus 16 ~~l~~~~~~~~~~~~~~~----~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQ----ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp ----------------CH----HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CceEEcceeeEEecCcch----hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 47999999 9999 5555 99999999999 99999999999999999999999885
No 150
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.97 E-value=1.5e-10 Score=101.73 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=22.9
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHH-HHhc
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV-RRIN 132 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~-gl~~ 132 (313)
..+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 578999999999999999999999999999999 9984
No 151
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.94 E-value=9.3e-11 Score=121.95 Aligned_cols=91 Identities=15% Similarity=0.175 Sum_probs=72.6
Q ss_pred HHHHHhhc---CCCccCCCCCCcCCCcchhhhhhccC--ceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcC
Q 021362 193 NCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQ--HKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVD 260 (313)
Q Consensus 193 ~~l~~l~~---~~~~~~~~LSgG~kqRv~ia~al~~~--ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd 260 (313)
+.|..+|. ..++.+.+|||||+|||+||.+++.+ ++++++|+|...||+ .+++.|+++.+ .+|+|+||
T Consensus 503 ~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHd 582 (993)
T 2ygr_A 503 GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHD 582 (993)
T ss_dssp HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCC
Confidence 34666663 25778889999999999999999988 589999999999998 55666666644 35799999
Q ss_pred hHHHHH--HHh----------hcccccCCchHHHH
Q 021362 261 LDTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 261 ~~~~~~--rv~----------griv~~G~~~ev~~ 283 (313)
++++.. |++ |++++.|+++++..
T Consensus 583 l~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 583 EDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp HHHHHTCSEEEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred HHHHHhCCEEEEecCccccCCCEEEEeeCHHHhhh
Confidence 998654 443 68889999988865
No 152
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.92 E-value=2.4e-09 Score=97.72 Aligned_cols=188 Identities=13% Similarity=0.091 Sum_probs=103.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCC-cccCCcccChHHHHH----hc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLY-LSQLDAMEDPKEAHA----RR 180 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~-~~~ltv~e~~~~~~~----~~ 180 (313)
++-++||.||+||||||+.+.|...+. . . ...+.++.+|.++.. ...++ ..+..... .+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg---~-~----------~~~~~vI~~D~~~r~~~~~~~--~~~~~~~~~g~~~~ 67 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR---R-E----------GVKAVSIEGDAFHRFNRADMK--AELDRRYAAGDATF 67 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH---H-H----------TCCEEEEEGGGGBSCCHHHHH--HHHHHHHHHTCTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh---h-c----------CCCeeEeecchhhcCCHHHhh--hhhhhhhhccCcCc
Confidence 456899999999999999999998663 1 0 112567888876532 11000 00000000 11
Q ss_pred CC--CCCccHHHHHHHHHHhhcCCCccCCCCCC---------cCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHh
Q 021362 181 GA--PWTFNPLLLLNCLKNLRNQGSVYAPSFDH---------GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 249 (313)
Q Consensus 181 ~~--~~~~~~~~~~~~l~~l~~~~~~~~~~LSg---------G~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~ 249 (313)
.. +...+.+.+.+.+..+........+.|.. .....+.-...+.....+++.|+.++++.. ....+..
T Consensus 68 ~~fg~~~~d~~~l~~~l~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~-~~~~v~~ 146 (290)
T 1a7j_A 68 SHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVN-SEVNIAG 146 (290)
T ss_dssp STTSGGGBCHHHHHHHHHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBC-SSCBCGG
T ss_pred CCCChhhhcHHHHHHHHHHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEeccccccc-chHhHHH
Confidence 11 33444555666666554222222222211 111111000112224678999998887320 0012445
Q ss_pred hccceEEEEcChHHHHHHHhhccc-ccCCchHHHHHHHHhcCCchhH-HhhhcccCccE------EeecC
Q 021362 250 MFDEKWFIEVDLDTAMQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADL------VIKSI 311 (313)
Q Consensus 250 l~~~~i~vtHd~~~~~~rv~griv-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~ad~------ii~~~ 311 (313)
.++..|||+-+.++...|.+.|.+ ..|...+-+.+++... .+..+ |+.|.+..||+ +|++.
T Consensus 147 ~~D~~IfV~a~~~~rl~Rrl~Rd~~~RG~s~e~v~~~i~~r-~~~~~r~i~p~~~~AD~~~~~~~vIDns 215 (290)
T 1a7j_A 147 LADLKIGVVPVINLEWIQKIHRDRATRGYTTEAVTDVILRR-MHAYVHCIVPQFSQTDINFQRVPVVDTS 215 (290)
T ss_dssp GCSEEEEEEECHHHHHHHHHHHTSSSCCSCCCCHHHHHHHH-HHHHHHHTGGGGGTCSEEEEEEESSCCS
T ss_pred hCCEEEEEECCHHHHHHHHhhhhhhhcCCChHHHHHHHHHh-CccHHHhhhhhhccCCEeeccCceecCC
Confidence 677889999999998887776544 4575544444455555 66655 99999999999 66654
No 153
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.90 E-value=1.2e-09 Score=100.53 Aligned_cols=111 Identities=14% Similarity=0.098 Sum_probs=73.2
Q ss_pred ccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHH
Q 021362 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (313)
Q Consensus 99 ~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~ 178 (313)
.++++..+|++++|+|||||||||+++.|++.+. ++.|+|.+ +..|.+. . .
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~---~~g~kV~l-----------v~~D~~r--~---~---------- 146 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV---DEGKSVVL-----------AAADTFR--A---A---------- 146 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEE-----------EEECTTC--H---H----------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH---hcCCEEEE-----------Ecccccc--H---H----------
Confidence 3566778999999999999999999999999998 76665543 4444220 0 0
Q ss_pred hcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcc---hhhhhhccCceEEEEcCCccc-cChhhHHHHHh
Q 021362 179 RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPV---EDDILVGLQHKVVIVDGNYLF-LDGGVWKDVSS 249 (313)
Q Consensus 179 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv---~ia~al~~~ar~Li~d~~~ll-lDE~~~~~l~~ 249 (313)
..+.+..+++.++.. .++.+|+|+.+++ +++.++..++++++.|.+-.+ .++.+++++.+
T Consensus 147 --------a~eqL~~~~~~~gl~---~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~ 210 (306)
T 1vma_A 147 --------AIEQLKIWGERVGAT---VISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRK 210 (306)
T ss_dssp --------HHHHHHHHHHHHTCE---EECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHcCCc---EEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCchhhHHHHHHHHHH
Confidence 012233344444421 2457789999998 788888888888888866432 23344444433
No 154
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.82 E-value=9.6e-11 Score=112.17 Aligned_cols=117 Identities=18% Similarity=0.135 Sum_probs=72.7
Q ss_pred ccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC---CCCeEEEEecCCCCCCcccCCcccCh
Q 021362 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---PPDVATVLPMDGFHLYLSQLDAMEDP 173 (313)
Q Consensus 97 L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~---~~~~i~~v~qd~~~~~~~~ltv~e~~ 173 (313)
-++++|+++.|++++|+|+||||||||+++|+|.. | .+.+.+ ....++++.+++.. .++++|..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~----~-----~i~~~~ftTl~p~~G~V~~~~~~----~~~l~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH----P-----KIAPYPFTTLSPNLGVVEVSEEE----RFTLADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC----C-----EECCCTTCSSCCEEEEEECSSSC----EEEEEECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC----c-----cccCcccceecceeeEEEecCcc----eEEEEecc
Confidence 36899999999999999999999999999999985 3 111211 22346667665410 12333332
Q ss_pred HHH---HHhcCCCCCccHHHHHHHHHHh-------hcCCCccCCCCCCcCCCcchhhhhhccCceEEEE
Q 021362 174 KEA---HARRGAPWTFNPLLLLNCLKNL-------RNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (313)
Q Consensus 174 ~~~---~~~~~~~~~~~~~~~~~~l~~l-------~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~ 232 (313)
-+. ....+.. ....+.+++. +.. +..+.+||+|++|++.++++++..+.+|++
T Consensus 214 Gli~~a~~~~~L~-----~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl 276 (416)
T 1udx_A 214 GIIEGASEGKGLG-----LEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL 276 (416)
T ss_dssp CCCCCGGGSCCSC-----HHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE
T ss_pred ccccchhhhhhhh-----HHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE
Confidence 110 0001111 1111111221 122 345558999999999999999999999987
No 155
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.82 E-value=7.8e-10 Score=94.98 Aligned_cols=53 Identities=19% Similarity=0.134 Sum_probs=40.3
Q ss_pred ccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCcee
Q 021362 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141 (313)
Q Consensus 81 ~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i 141 (313)
+|++..++... +.+.+++..++|++++|+||||||||||+++|++.+. ..|.+
T Consensus 3 ~~~~~~~~~~~----~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~----~~G~~ 55 (200)
T 3uie_A 3 TNIKWHECSVE----KVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY----QKGKL 55 (200)
T ss_dssp -------CCCC----HHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH----HTTCC
T ss_pred CCCcccccccC----HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH----hcCce
Confidence 46677776665 7888999999999999999999999999999999984 45655
No 156
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.81 E-value=8.4e-10 Score=110.55 Aligned_cols=166 Identities=14% Similarity=0.120 Sum_probs=94.9
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCC-ceeecCCCCC---CCeEE
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-ASSFDSQVKP---PDVAT 153 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~-G~i~~~g~~~---~~~i~ 153 (313)
+.-++++..||... +++++++.+..|+.++|+||||+|||||+++|+++++ +.. |.+.+.+... ...+.
T Consensus 35 ~rp~~l~~i~G~~~----~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~---~~~~~~~~~~~~~~~~~~p~i~ 107 (604)
T 3k1j_A 35 VPEKLIDQVIGQEH----AVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP---TETLEDILVFPNPEDENMPRIK 107 (604)
T ss_dssp CCSSHHHHCCSCHH----HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC---CSSCEEEEEECCTTCTTSCEEE
T ss_pred ccccccceEECchh----hHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC---cccCCeEEEeCCcccccCCcEE
Confidence 33466777788776 9999999999999999999999999999999999998 766 6676655432 23466
Q ss_pred EEecCCC--------------------CCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCC
Q 021362 154 VLPMDGF--------------------HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDH 211 (313)
Q Consensus 154 ~v~qd~~--------------------~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSg 211 (313)
++++... .+....+++.+|+....... .+............+.++. ........+++
T Consensus 108 ~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~-~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~ 186 (604)
T 3k1j_A 108 TVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGR-TKAPFIDATGAHAGALLGDVRHDPFQSGGLGT 186 (604)
T ss_dssp EEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTC-SSCCEEECTTCCHHHHHCEECCCCC----CCC
T ss_pred EEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccC-CCCCEEEcCCCCHHhcCceEEechhhcCCccc
Confidence 6665420 01111234444442210000 0000000000111223341 12223357999
Q ss_pred cCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhcc
Q 021362 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (313)
Q Consensus 212 G~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~ 252 (313)
|++|++........+..+|++|+.-. |++..+..|.+..+
T Consensus 187 g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le 226 (604)
T 3k1j_A 187 PAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQ 226 (604)
T ss_dssp CGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHH
T ss_pred cccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHH
Confidence 99999888666665566666665444 35556666655543
No 157
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.80 E-value=1.5e-08 Score=83.36 Aligned_cols=32 Identities=25% Similarity=0.179 Sum_probs=29.3
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+|+++ +|+.++|+||||+|||||+++|++.+.
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56665 899999999999999999999999996
No 158
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.79 E-value=9.8e-09 Score=95.24 Aligned_cols=127 Identities=14% Similarity=0.110 Sum_probs=63.9
Q ss_pred EEEEECCCCCcHHHHHHHHHH-HhcccCCCCceeecCCCCCC------CeEEEEecCCCCCCcccCCcccChHHHHHhcC
Q 021362 109 IVGLAGPPGAGKSTLAAEVVR-RINKIWPQKASSFDSQVKPP------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~g-l~~~~~p~~G~i~~~g~~~~------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~ 181 (313)
.+.|.||||+|||||+++|++ ++. |+.|.+.++|.+.. ..++++++..+.. +...+ .+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~---~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--------~~ 102 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFG---PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLE----ITPSD--------MG 102 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSC---TTCCC------------------CCEECSSEEE----ECCC-----------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcC---CCCCeEEecceeecccccccceeeeecccceEE----ecHhh--------cC
Confidence 389999999999999999999 777 89999998875432 2355566553211 11100 00
Q ss_pred CCCCccHHHHHHHHHHhhcCC--CccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhc----cc--
Q 021362 182 APWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF----DE-- 253 (313)
Q Consensus 182 ~~~~~~~~~~~~~l~~l~~~~--~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~----~~-- 253 (313)
. .....+.+.++.+.... .... .||| +..+++++++|++.. +|+...+.+.+.. ..
T Consensus 103 ~---~~~~~~~~~i~~~~~~~~~~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~ 166 (354)
T 1sxj_E 103 N---NDRIVIQELLKEVAQMEQVDFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIR 166 (354)
T ss_dssp ----CCHHHHHHHHHHHTTTTC------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEE
T ss_pred C---cchHHHHHHHHHHHHhccccccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCE
Confidence 0 11123444444443111 1111 4455 344588999999887 8885444444433 22
Q ss_pred eEEEEcChHHHHH
Q 021362 254 KWFIEVDLDTAMQ 266 (313)
Q Consensus 254 ~i~vtHd~~~~~~ 266 (313)
.|++||+++.+..
T Consensus 167 ~Il~t~~~~~l~~ 179 (354)
T 1sxj_E 167 LIMVCDSMSPIIA 179 (354)
T ss_dssp EEEEESCSCSSCH
T ss_pred EEEEeCCHHHHHH
Confidence 3699999765433
No 159
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.78 E-value=8.1e-10 Score=104.91 Aligned_cols=154 Identities=13% Similarity=0.080 Sum_probs=85.3
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHH------------HhcccCCCCceeecCCCC---------CCCeE---EEEecC
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVR------------RINKIWPQKASSFDSQVK---------PPDVA---TVLPMD 158 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~g------------l~~~~~p~~G~i~~~g~~---------~~~~i---~~v~qd 158 (313)
.+.+|..+||+|+||||||||+|+|+| .+. |+.|.+.+.|.. ..+.+ .++.+-
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~---p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~ 92 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATID---PEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDI 92 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCC---TTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECT
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeec---ceeeeeeeCCcchhhhhhhcccccccCcceEEEec
Confidence 568899999999999999999999999 444 888999887621 11112 234433
Q ss_pred CCCCCcccCCcccCh--HHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCc
Q 021362 159 GFHLYLSQLDAMEDP--KEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (313)
Q Consensus 159 ~~~~~~~~ltv~e~~--~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~ 236 (313)
+.... ..+..+++ .+....+... .++..++...+..+..+++++. .+ .+++++|+++
T Consensus 93 pGl~~--~~s~~e~L~~~fl~~ir~~d---------~il~Vvd~~~d~~i~~v~~~~d---P~-------~di~ildeel 151 (392)
T 1ni3_A 93 AGLTK--GASTGVGLGNAFLSHVRAVD---------AIYQVVRAFDDAEIIHVEGDVD---PI-------RDLSIIVDEL 151 (392)
T ss_dssp GGGCC--CCCSSSSSCHHHHHHHTTCS---------EEEEEEECCCTTCSSCCSSSSC---HH-------HHHHHHHHHH
T ss_pred ccccc--CCcHHHHHHHHHHHHHHHHH---------HHHHHHhccccceeeeeccccC---cc-------hhhhhchhhh
Confidence 33222 24555544 3322222110 0111111222333444565541 01 2555666666
Q ss_pred cccChh----hHHHHHhh-ccce-EEEEcChHHHHH---HHh-----h-cccccCCchH
Q 021362 237 LFLDGG----VWKDVSSM-FDEK-WFIEVDLDTAMQ---RVL-----K-RHISTGKPPD 280 (313)
Q Consensus 237 lllDE~----~~~~l~~l-~~~~-i~vtHd~~~~~~---rv~-----g-riv~~G~~~e 280 (313)
.++|.. .++.+..+ ...+ .+++|++..+.. ++. | +++..|...+
T Consensus 152 ~~~D~~~~~k~~~~l~~~~~~~g~ti~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 152 LIKDAEFVEKHLEGLRKITSRGANTLEMKAKKEEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSSCSSSHHHHHHHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHhccCCceeecCCCCH
Confidence 777763 44555555 3332 234898887766 443 7 7777666443
No 160
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.70 E-value=3.4e-09 Score=109.31 Aligned_cols=90 Identities=14% Similarity=0.139 Sum_probs=70.4
Q ss_pred HHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCc--eEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcCh
Q 021362 194 CLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDL 261 (313)
Q Consensus 194 ~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~a--r~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~ 261 (313)
.|..++.. .++.+.+|||||+|||+||++|+.++ +++++|+|+..||. .+++.|+.+.+. +|+|+||+
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl 441 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL 441 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 45566633 46788899999999999999999998 59999999999998 455555555443 57999999
Q ss_pred HHHHH--HHh----------hcccccCCchHHHH
Q 021362 262 DTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 262 ~~~~~--rv~----------griv~~G~~~ev~~ 283 (313)
+++.. |++ |++++.|+++++..
T Consensus 442 ~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 442 DVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp HHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred HHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence 96644 443 57888999888754
No 161
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.69 E-value=5.1e-09 Score=95.80 Aligned_cols=56 Identities=16% Similarity=0.126 Sum_probs=45.9
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecC
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS 144 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~ 144 (313)
+.++++++.|+.. . ++++|+ +|++++|+|+||+||||++..|++++. +..|+|.+.
T Consensus 77 ~~~~~l~~~~~~~-----~-~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~---~~~~~v~l~ 132 (295)
T 1ls1_A 77 TVYEALKEALGGE-----A-RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK---GKGRRPLLV 132 (295)
T ss_dssp HHHHHHHHHTTSS-----C-CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH---HTTCCEEEE
T ss_pred HHHHHHHHHHCCC-----C-ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEe
Confidence 4567888888642 1 678888 999999999999999999999999998 766666543
No 162
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.66 E-value=1.2e-08 Score=87.60 Aligned_cols=28 Identities=39% Similarity=0.515 Sum_probs=23.9
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++|++++|+||||||||||+++|+|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999999999983
No 163
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.66 E-value=6.1e-09 Score=85.71 Aligned_cols=60 Identities=10% Similarity=0.088 Sum_probs=49.1
Q ss_pred CccCCCCCCcCCCcchhh------hhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChH
Q 021362 203 SVYAPSFDHGVGDPVEDD------ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLD 262 (313)
Q Consensus 203 ~~~~~~LSgG~kqRv~ia------~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~ 262 (313)
++++.+||||||||++|| ++++.+++++++|+|+..||+ .+++.|.++.+. .+++|||++
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~ 124 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE 124 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH
Confidence 456779999999999876 788899999999999999999 455666665432 479999985
No 164
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.63 E-value=3.5e-07 Score=78.31 Aligned_cols=70 Identities=17% Similarity=0.153 Sum_probs=41.0
Q ss_pred EEEEcCCccccChhhHHHHHhhccceEEEEcChHHHHHHHhhcccccCCchHHHHHHHHhcCCchhHHhhhcccCccEEe
Q 021362 229 VVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVI 308 (313)
Q Consensus 229 ~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~~~~rv~griv~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~ad~ii 308 (313)
.++.+.+++. |.- +...++..++++.+.++..+|+..|. |.+.+-+..++.. ..+..+. ...||++|
T Consensus 107 ~vv~~~~~l~--e~~---~~~~~d~vi~l~~~~e~~~~Rl~~R~---~~~~e~~~~r~~~-q~~~~~~----~~~ad~vI 173 (206)
T 1jjv_A 107 YTLFVVPLLI--ENK---LTALCDRILVVDVSPQTQLARSAQRD---NNNFEQIQRIMNS-QVSQQER----LKWADDVI 173 (206)
T ss_dssp EEEEECTTTT--TTT---CGGGCSEEEEEECCHHHHHHHHC--------CHHHHHHHHHH-SCCHHHH----HHHCSEEE
T ss_pred EEEEEechhh--hcC---cHhhCCEEEEEECCHHHHHHHHHHcC---CCCHHHHHHHHHh-cCChHHH----HHhCCEEE
Confidence 5666665432 211 34567778999999999988887553 5455555555554 2333332 34689999
Q ss_pred ecC
Q 021362 309 KSI 311 (313)
Q Consensus 309 ~~~ 311 (313)
++.
T Consensus 174 dn~ 176 (206)
T 1jjv_A 174 NND 176 (206)
T ss_dssp ECC
T ss_pred ECC
Confidence 875
No 165
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.59 E-value=2.1e-08 Score=85.60 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=29.5
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCc
Q 021362 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (313)
Q Consensus 102 l~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G 139 (313)
++|.+|++++|+||||||||||+++|++++. |+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~---~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPS---TSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTT---CCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhC---CCeE
Confidence 3678999999999999999999999999986 6555
No 166
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.57 E-value=1.8e-08 Score=85.37 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=24.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
|++++|+||||||||||+++|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999986
No 167
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.56 E-value=3.9e-09 Score=103.19 Aligned_cols=136 Identities=17% Similarity=0.092 Sum_probs=82.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCC------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD------ 150 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~------ 150 (313)
+.+++++.+.|.... +++++++.+++| +.|+||||+|||||+++|++... .+.+.+++.+...
T Consensus 40 k~~l~~lv~~l~~~~----~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~~~g~~ 108 (499)
T 2dhr_A 40 KEELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVG 108 (499)
T ss_dssp HHHHHHHHHHHHCGG----GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSSCTTHH
T ss_pred HHHHHHHHHHhhchh----hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHhhhhhH
Confidence 355677777776555 899999999999 89999999999999999999873 5666666543211
Q ss_pred --eEEEEecCCCCCCcccCCcccChHHHHHhcCC----CCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhc
Q 021362 151 --VATVLPMDGFHLYLSQLDAMEDPKEAHARRGA----PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 151 --~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~----~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
.+..+||...... +.+.+.|++.......+. ...+....+..++. .||||++|+..++++..
T Consensus 109 ~~~v~~lfq~a~~~~-p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~-----------~Ldg~~~~~~viviAat 176 (499)
T 2dhr_A 109 AARVRDLFETAKRHA-PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV-----------EMDGFEKDTAIVVMAAT 176 (499)
T ss_dssp HHHHHHHTTTSSSSS-SCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH-----------HGGGCCSSCCCEEEECC
T ss_pred HHHHHHHHHHHHhcC-CCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH-----------HhcccccCccEEEEEec
Confidence 1334555432111 124556666432111110 01111122233332 47899999988866666
Q ss_pred cCceEEEEcCCcc
Q 021362 225 LQHKVVIVDGNYL 237 (313)
Q Consensus 225 ~~ar~Li~d~~~l 237 (313)
..+.. +||.++
T Consensus 177 n~p~~--LD~aLl 187 (499)
T 2dhr_A 177 NRPDI--LDPALL 187 (499)
T ss_dssp SCGGG--SCTTTS
T ss_pred CChhh--cCcccc
Confidence 66654 455544
No 168
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.55 E-value=6.1e-07 Score=81.98 Aligned_cols=43 Identities=23% Similarity=0.266 Sum_probs=36.4
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCC
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF 160 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~ 160 (313)
.+|++++|+||||+||||+++.|++.+. +++| +++.++.+|.+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~---~~~G----------~~V~lv~~D~~ 145 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM---LEKH----------KKIAFITTDTY 145 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH---HTTC----------CCEEEEECCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH---HhcC----------CEEEEEecCcc
Confidence 5799999999999999999999999997 6666 34677888754
No 169
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.50 E-value=7.9e-09 Score=96.35 Aligned_cols=63 Identities=21% Similarity=0.161 Sum_probs=54.7
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCC
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g 145 (313)
.+++.+++.+.|+... +++++++.+.+|.+++|+|+||+|||||++.|++.+. +..|++.+-+
T Consensus 29 ~~ie~~~~~~~~~~~~----~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~---~~~~~v~v~~ 91 (341)
T 2p67_A 29 TLVESRHPRHQALSTQ----LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI---REGLKVAVIA 91 (341)
T ss_dssp HHHHCCCHHHHHHHHH----HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH---HTTCCEEEEE
T ss_pred hHhhcCCchhhhHHHH----HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH---hcCCeEEEEe
Confidence 4678888888888766 8999999999999999999999999999999999997 7777665433
No 170
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.49 E-value=5.8e-08 Score=81.88 Aligned_cols=28 Identities=14% Similarity=0.411 Sum_probs=26.0
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+|++++|+||||||||||+++|+++++
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3689999999999999999999999874
No 171
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.47 E-value=4.3e-08 Score=82.31 Aligned_cols=36 Identities=28% Similarity=0.424 Sum_probs=32.0
Q ss_pred ccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCc
Q 021362 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (313)
Q Consensus 101 sl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G 139 (313)
+|++.+|+.++|.||||+|||||+++|++.+. |++|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~---~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY---EKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH---HHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHH---HHcC
Confidence 56778899999999999999999999999996 5555
No 172
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.47 E-value=8.7e-08 Score=88.60 Aligned_cols=47 Identities=19% Similarity=0.140 Sum_probs=42.3
Q ss_pred cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC
Q 021362 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 98 ~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~ 147 (313)
.+++|++++|++++|+|+||+||||++..|++.+. +..|+|.+.+.+
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~---~~g~kVllid~D 142 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA---ELGYKVLIAAAD 142 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH---HTTCCEEEEECC
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEeCC
Confidence 68999999999999999999999999999999998 888888765544
No 173
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.47 E-value=1.5e-08 Score=99.05 Aligned_cols=155 Identities=12% Similarity=-0.009 Sum_probs=81.3
Q ss_pred ccccccCCCcEEEEECCCCCcHHHHHHHHHH--HhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccC--CcccChH
Q 021362 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVR--RINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL--DAMEDPK 174 (313)
Q Consensus 99 ~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~g--l~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~l--tv~e~~~ 174 (313)
.+++++.++..+.|.|++||||||++++|.. +.+ ++.|++.+-+.+... +. ++. +... +++ ++.++..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~---~~p~~v~l~liDpK~-~e--l~~-~~~l-Phl~~~Vvtd~~ 230 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYK---AQPEDVRFIMIDPKM-LE--LSV-YEGI-PHLLTEVVTDMK 230 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTT---CCTTTEEEEEECCSS-SG--GGG-GTTC-TTBSSSCBCSHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHh---CCCceEEEEEECCch-hh--hhh-hccC-CcccceeecCHH
Confidence 3667788899999999999999999999876 334 555666554433321 00 111 1111 112 3556665
Q ss_pred HHHHhcCCCCCccHHHHHHHHHHhhcCC----CccC-CCCCCcCCCcch----------hhhhhccCce-EEEEcCCccc
Q 021362 175 EAHARRGAPWTFNPLLLLNCLKNLRNQG----SVYA-PSFDHGVGDPVE----------DDILVGLQHK-VVIVDGNYLF 238 (313)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~~-~~LSgG~kqRv~----------ia~al~~~ar-~Li~d~~~ll 238 (313)
...........+..++ .+++...+... +... ..+|+|++|+.. ++.++...+. +++.|+...+
T Consensus 231 ~a~~~L~~~~~EmerR-~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~l 309 (512)
T 2ius_A 231 DAANALRWCVNEMERR-YKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADL 309 (512)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHH
Confidence 4332211111112222 24455444211 1112 267999998742 3333333454 6667777666
Q ss_pred cCh---hhHHHHHhh---ccc----eEEEEcChH
Q 021362 239 LDG---GVWKDVSSM---FDE----KWFIEVDLD 262 (313)
Q Consensus 239 lDE---~~~~~l~~l---~~~----~i~vtHd~~ 262 (313)
+++ .+.+.|..+ ... .+++||.+.
T Consensus 310 l~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 310 MMTVGKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred HhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 653 223333333 222 269999987
No 174
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.46 E-value=1.5e-07 Score=89.65 Aligned_cols=30 Identities=30% Similarity=0.335 Sum_probs=25.8
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHH--HHHhc
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEV--VRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l--~gl~~ 132 (313)
-|++|+++.|+||||||||||++.| .++.+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p 205 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIP 205 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccC
Confidence 6889999999999999999999955 45554
No 175
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.41 E-value=6.5e-07 Score=76.41 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=41.7
Q ss_pred eEEEEcCCccccChhhHHHHHhhccceEEEEcChHHHHHHHhhcccccCCchHHHHHHHHhcCCchhHHhhhcccCccEE
Q 021362 228 KVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLV 307 (313)
Q Consensus 228 r~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~~~~rv~griv~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~ad~i 307 (313)
.+++.|.+++.-. .+..+.+..++++-+.+...+|+..| |...+-+.+++... .+. .+....||++
T Consensus 106 ~~vive~~~l~~~-----~~~~~~~~~i~l~~~~e~~~~Rl~~R----~~~~~~~~~~~~~~-~~~----~~~~~~ad~v 171 (204)
T 2if2_A 106 TLFILEASLLVEK-----GTYKNYDKLIVVYAPYEVCKERAIKR----GMSEEDFERRWKKQ-MPI----EEKVKYADYV 171 (204)
T ss_dssp CCEEEECSCSTTT-----TCGGGSSEEEEECCCHHHHHHHHHHT----CCCHHHHHHHHTTS-CCH----HHHGGGCSEE
T ss_pred CEEEEEccccccC-----CchhhCCEEEEEECCHHHHHHHHHHc----CCCHHHHHHHHHhC-CCh----hHHHhcCCEE
Confidence 4677777653321 12234667789999999988888766 44444444444433 232 2234567888
Q ss_pred eecC
Q 021362 308 IKSI 311 (313)
Q Consensus 308 i~~~ 311 (313)
|++.
T Consensus 172 Id~~ 175 (204)
T 2if2_A 172 IDNS 175 (204)
T ss_dssp CCCS
T ss_pred EECC
Confidence 8764
No 176
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.38 E-value=1.8e-07 Score=80.03 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=25.3
Q ss_pred ccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 101 sl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++.++|++++|+||||||||||+++|++.+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3556789999999999999999999999987
No 177
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.36 E-value=2.3e-07 Score=88.99 Aligned_cols=57 Identities=11% Similarity=-0.002 Sum_probs=47.1
Q ss_pred CCCCcCCCcchhhhhhc----cCceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHH
Q 021362 208 SFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTA 264 (313)
Q Consensus 208 ~LSgG~kqRv~ia~al~----~~ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~ 264 (313)
.||||||||++||++++ .++.++++|++...||+ .+.+.|.++.. ..+++||+....
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~ 400 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF 400 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH
Confidence 59999999999999999 57999999999999999 45566666543 357999997654
No 178
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.36 E-value=1.3e-07 Score=82.85 Aligned_cols=31 Identities=19% Similarity=0.179 Sum_probs=27.8
Q ss_pred cccccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 021362 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 100 vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl 130 (313)
-+.+.++|++++|.|+||||||||+++|+|+
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 3456789999999999999999999999986
No 179
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.33 E-value=2.7e-07 Score=80.55 Aligned_cols=28 Identities=14% Similarity=0.265 Sum_probs=26.6
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl 130 (313)
.+++|++++|+||||||||||++.|++.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 5889999999999999999999999994
No 180
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.33 E-value=1.6e-07 Score=88.73 Aligned_cols=42 Identities=24% Similarity=0.314 Sum_probs=38.0
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeec
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~ 143 (313)
+|+++++++++|++++|+||||||||||+++|+|.. .|.+..
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 899999999999999999999999999999999966 366654
No 181
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.32 E-value=2.6e-07 Score=91.38 Aligned_cols=41 Identities=27% Similarity=0.225 Sum_probs=35.5
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCc-eee-cCC
Q 021362 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSF-DSQ 145 (313)
Q Consensus 102 l~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G-~i~-~~g 145 (313)
..+++|++++|+|+||||||||+++|+|++. |++| ++. ++|
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~---~~~G~~i~~lDg 406 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLM---EMGGRCVTLLDG 406 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHH---TTCSSCEEEESS
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhc---ccCCceEEEECC
Confidence 3678999999999999999999999999998 8876 563 554
No 182
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.31 E-value=3.6e-07 Score=78.79 Aligned_cols=28 Identities=29% Similarity=0.513 Sum_probs=26.6
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++|++++|+||||||||||++.|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999999986
No 183
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.29 E-value=2.5e-07 Score=77.96 Aligned_cols=63 Identities=11% Similarity=-0.023 Sum_probs=49.9
Q ss_pred CccCCCCCCcCCCcchhhhhhcc----CceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHH
Q 021362 203 SVYAPSFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAM 265 (313)
Q Consensus 203 ~~~~~~LSgG~kqRv~ia~al~~----~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~ 265 (313)
...+..||||||||++||++++. +++++++|++...||+ .+.+.|+++... .|+|||+.....
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~ 131 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMA 131 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHT
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHH
Confidence 34566999999999999999974 4699999999999999 555666665443 479999976543
No 184
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.25 E-value=1.7e-07 Score=92.71 Aligned_cols=61 Identities=23% Similarity=0.291 Sum_probs=52.4
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCC
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~ 146 (313)
+-++++.+.|+... ++.++++++ +|++++|+||||+|||||+++|++.+. +..|.|.+.+.
T Consensus 84 ~G~~~vk~~i~~~~----~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~---~~~~~i~~~~~ 144 (543)
T 3m6a_A 84 HGLEKVKERILEYL----AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG---RKFVRISLGGV 144 (543)
T ss_dssp SSCHHHHHHHHHHH----HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT---CEEEEECCCC-
T ss_pred ccHHHHHHHHHHHH----HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC---CCeEEEEeccc
Confidence 44577777787655 889999999 899999999999999999999999998 88888888774
No 185
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.21 E-value=1.3e-05 Score=68.31 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=23.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..+++|+|++||||||+++.|++.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999999874
No 186
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.21 E-value=1.5e-06 Score=83.90 Aligned_cols=141 Identities=13% Similarity=0.145 Sum_probs=83.4
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHH
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~ 175 (313)
.|+++...+.+|+++.|.|++|+|||||+..+++... +..| ..+.|+..+ ++..+....
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~---~~~g----------~~Vl~~s~E--------~s~~~l~~r 250 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA---TKTN----------ENVAIFSLE--------MSAQQLVMR 250 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH---HHSS----------CCEEEEESS--------SCHHHHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH---HhCC----------CcEEEEECC--------CCHHHHHHH
Confidence 6888888899999999999999999999999999875 4333 124455443 111111111
Q ss_pred HH-H---------hcCCCCCccHHHHHHHHHHhhcCC--CccCCCCCCcCCCcchhhhhhc--cCceEEEEcCCccccCh
Q 021362 176 AH-A---------RRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVG--LQHKVVIVDGNYLFLDG 241 (313)
Q Consensus 176 ~~-~---------~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~LSgG~kqRv~ia~al~--~~ar~Li~d~~~lllDE 241 (313)
.. . ..|.-...+..++.+.++.+.... -...+.+|.++.+. .++.+. ..+++++.|..-++.+.
T Consensus 251 ~~~~~~~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~--~~~~l~~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 251 MLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRA--KCRRLKQESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp HHHHHHTCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHH--HHHHHHTTTCCCEEEEECGGGSCCS
T ss_pred HHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHH--HHHHHHHHcCCCEEEEccHHHhccC
Confidence 00 0 112111223345555666655211 11234788887653 334443 67899999998887742
Q ss_pred ------------hhHHHHHhhccc----eEEEEc
Q 021362 242 ------------GVWKDVSSMFDE----KWFIEV 259 (313)
Q Consensus 242 ------------~~~~~l~~l~~~----~i~vtH 259 (313)
.+...|+.+.++ +|+++|
T Consensus 329 ~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sq 362 (454)
T 2r6a_A 329 GRSKENRQQEVSEISRSLKALARELEVPVIALSQ 362 (454)
T ss_dssp CC----CHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 344445555433 457777
No 187
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.19 E-value=9.5e-07 Score=73.48 Aligned_cols=28 Identities=39% Similarity=0.617 Sum_probs=25.8
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+|++++|+|+|||||||++++|++.+.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 5799999999999999999999999873
No 188
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.13 E-value=1.3e-06 Score=75.02 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=26.8
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 102 l~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+...+|++++|+||||||||||++.|.+.++
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4456899999999999999999999999874
No 189
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.12 E-value=1.2e-06 Score=72.62 Aligned_cols=27 Identities=41% Similarity=0.646 Sum_probs=24.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999885
No 190
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.11 E-value=8.3e-06 Score=71.86 Aligned_cols=60 Identities=15% Similarity=0.242 Sum_probs=39.2
Q ss_pred ceEEEEcChHHHHHHHhhcccccC--CchHHHHHHHHhcCCchhH-HhhhcccCcc-EEeecCC
Q 021362 253 EKWFIEVDLDTAMQRVLKRHISTG--KPPDVAKWRIEYNDRPNAE-LIMKSKKNAD-LVIKSID 312 (313)
Q Consensus 253 ~~i~vtHd~~~~~~rv~griv~~G--~~~ev~~~~~~~~~~~~~~-~i~~~~~~ad-~ii~~~~ 312 (313)
-.||++-++++..+|+..+....| ...+-+...+..++..... +..|.+...| ++|++..
T Consensus 148 lkifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs~ 211 (233)
T 3r20_A 148 VKIFLTASAEERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSD 211 (233)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECTT
T ss_pred EEEEEECCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECCC
Confidence 458999999999887775444332 3334444456666665555 6667776666 8888764
No 191
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.11 E-value=1.2e-06 Score=74.16 Aligned_cols=36 Identities=28% Similarity=0.199 Sum_probs=30.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCC-----------CCceeecCCC
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWP-----------QKASSFDSQV 146 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~~~~p-----------~~G~i~~~g~ 146 (313)
-.++|+|+||||||||++.++|... + ++|+|.++|.
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~---~~~~~~t~~~~~~~~~i~~~g~ 76 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEF---NLESKSTIGVEFATRSIQVDGK 76 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC---CCSCCCCCSEEEEEEEEEETTE
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC---CCCCCCccceEEEEEEEEECCE
Confidence 3689999999999999999999875 4 4677777764
No 192
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.08 E-value=8.7e-07 Score=76.73 Aligned_cols=37 Identities=22% Similarity=0.437 Sum_probs=31.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeec
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~ 143 (313)
+.+++|+||+||||||++++|++.+...+++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999987311278888876
No 193
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.07 E-value=1.7e-06 Score=82.76 Aligned_cols=54 Identities=19% Similarity=0.155 Sum_probs=43.6
Q ss_pred EccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecC
Q 021362 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS 144 (313)
Q Consensus 80 ~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~ 144 (313)
.+++.+.|+... ++++|+ +|++++++|+|||||||++..|++.+. +..|.|.+.
T Consensus 79 ~~~L~~~~~~~~------~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~---~~g~~Vllv 132 (425)
T 2ffh_A 79 YEALKEALGGEA------RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK---GKGRRPLLV 132 (425)
T ss_dssp HHHHHHHTTSSC------CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEE
T ss_pred HHHHHHHhCCCc------ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEe
Confidence 356777886532 578887 899999999999999999999999998 766666543
No 194
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.06 E-value=3.3e-06 Score=74.13 Aligned_cols=37 Identities=24% Similarity=0.423 Sum_probs=27.5
Q ss_pred cccccccccC---CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 96 PTSALASNVN---VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 ~L~~vsl~i~---~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
-|.++|+.+. +|.+++|.|++||||||+++.|+..+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4566677666 999999999999999999999999996
No 195
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.05 E-value=4.4e-06 Score=75.50 Aligned_cols=72 Identities=19% Similarity=0.470 Sum_probs=48.1
Q ss_pred ceEEEEcCCccccChhhHHHHHhhccceEEEEcChHHHHHHHhhcccccCCchHHHHHHHHhcCCchhHHhhhcccCccE
Q 021362 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADL 306 (313)
Q Consensus 227 ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~~~~rv~griv~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~ad~ 306 (313)
..+++.|+.+++ .. .+...++..|+++-+.++..+|+..|. |.+.+-+.+++... .+..+++ ..||+
T Consensus 181 ~~~vIveg~~l~-~~----~~~~~~d~vI~l~a~~ev~~~Rl~~R~---g~s~e~~~~ri~~q-~~~~~~~----~~AD~ 247 (281)
T 2f6r_A 181 KTLCVIDAAMLL-EA----GWQSMVHEVWTVVIPETEAVRRIVERD---GLSEAAAQSRLQSQ-MSGQQLV----EQSNV 247 (281)
T ss_dssp CCEEEEECTTTT-TT----TGGGGCSEEEEEECCHHHHHHHHHHHH---CCCHHHHHHHHHTS-CCHHHHH----HTCSE
T ss_pred CCEEEEEechhh-cc----chHHhCCEEEEEcCCHHHHHHHHHHcC---CCCHHHHHHHHHHc-CChHhhH----hhCCE
Confidence 467888988644 21 133556778999999999988887653 54555555666654 4544444 35899
Q ss_pred EeecC
Q 021362 307 VIKSI 311 (313)
Q Consensus 307 ii~~~ 311 (313)
+|++.
T Consensus 248 vIdn~ 252 (281)
T 2f6r_A 248 VLSTL 252 (281)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 99875
No 196
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.02 E-value=1.5e-06 Score=79.40 Aligned_cols=54 Identities=13% Similarity=0.114 Sum_probs=42.9
Q ss_pred EccceEEccccccccccccc-cccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeec
Q 021362 80 ARCMDEVYDALAQRLLPTSA-LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143 (313)
Q Consensus 80 ~~~l~~~y~~~~~~~~~L~~-vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~ 143 (313)
.+++.+.|++.. .+ ++|+.+ |.+++++|+||+||||++..|++.+. +..|+|.+
T Consensus 77 ~~~l~~~~~~~~------~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~---~~g~~v~l 131 (297)
T 1j8m_F 77 YDELSNLFGGDK------EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK---KKGFKVGL 131 (297)
T ss_dssp HHHHHHHTTCSC------CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH---HTTCCEEE
T ss_pred HHHHHHHhcccc------ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEE
Confidence 466777786532 46 888877 99999999999999999999999997 55555443
No 197
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.01 E-value=3e-06 Score=79.12 Aligned_cols=40 Identities=33% Similarity=0.426 Sum_probs=34.6
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~ 147 (313)
.++.+++|+|++|||||||++.|+|.+. ++.|+|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~---~~~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT---ERGHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh---hcCCeEEEEeec
Confidence 3588999999999999999999999998 888887765544
No 198
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.01 E-value=2.6e-06 Score=80.31 Aligned_cols=53 Identities=21% Similarity=0.237 Sum_probs=46.9
Q ss_pred EEEEccceEEcccccccccccc--------------ccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 77 VVEARCMDEVYDALAQRLLPTS--------------ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~--------------~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
-++++||+..|.... ..|+ |+.+.+.+|+.++|+||+|+|||||++.|++.+.
T Consensus 133 ri~Fe~ltp~yP~er---~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 133 KILFENLTPLHANSR---LRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp SCCTTTSCEESCCSB---CCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CceeccccccCCCCc---cccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 377899999997532 2677 8999999999999999999999999999999885
No 199
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.00 E-value=2.8e-06 Score=71.04 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=25.8
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+|++++|+|++||||||+++.|++.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999999999986
No 200
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.96 E-value=6.3e-06 Score=67.40 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=25.0
Q ss_pred cccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 100 vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
..+++.+| +.+|+|||||||||++.+|.-.+
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 33445554 89999999999999999998655
No 201
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.96 E-value=2.5e-06 Score=73.43 Aligned_cols=35 Identities=26% Similarity=0.291 Sum_probs=31.6
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCc
Q 021362 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (313)
Q Consensus 102 l~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G 139 (313)
+.+.+|.+++|.|++||||||+++.|++.+. |..|
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~---~~~g 54 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV---RDRR 54 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH---HHHC
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc---cccC
Confidence 5678999999999999999999999999996 5666
No 202
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.96 E-value=1.2e-06 Score=80.93 Aligned_cols=53 Identities=26% Similarity=0.443 Sum_probs=45.1
Q ss_pred ccceEEccccccccccccccccccCCCcE--EEEECCCCCcHHHHHHHHHHHhcccCCCCce
Q 021362 81 RCMDEVYDALAQRLLPTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (313)
Q Consensus 81 ~~l~~~y~~~~~~~~~L~~vsl~i~~Gei--v~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~ 140 (313)
++++..||... +++.++..+..|++ +.|.||+|+||||+++++++.+. +..+.
T Consensus 22 ~~~~~~~g~~~----~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~---~~~~~ 76 (340)
T 1sxj_C 22 ETLDEVYGQNE----VITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY---GKNYS 76 (340)
T ss_dssp SSGGGCCSCHH----HHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH---TTSHH
T ss_pred CcHHHhcCcHH----HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc---CCCcc
Confidence 45666777666 88999999999998 99999999999999999999986 65544
No 203
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.94 E-value=3.4e-06 Score=71.49 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++|+|+||||||||++.++|..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999974
No 204
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.94 E-value=0.00011 Score=59.90 Aligned_cols=78 Identities=17% Similarity=0.075 Sum_probs=44.1
Q ss_pred ceEEEEcCCccccChhhHHHHHhhcc---ceEEEEcChHHHHHHHhhcccc-cCCchHHHHHHHHh-cCCchhHHhhhcc
Q 021362 227 HKVVIVDGNYLFLDGGVWKDVSSMFD---EKWFIEVDLDTAMQRVLKRHIS-TGKPPDVAKWRIEY-NDRPNAELIMKSK 301 (313)
Q Consensus 227 ar~Li~d~~~lllDE~~~~~l~~l~~---~~i~vtHd~~~~~~rv~griv~-~G~~~ev~~~~~~~-~~~~~~~~i~~~~ 301 (313)
...++.|+- .+....+.+.+... ..|+++-+.+.+.+|+.+|--. .+...+-+..++.. ... -..+..
T Consensus 78 ~~~vi~dg~---~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~----~~~~~~ 150 (179)
T 3lw7_A 78 HDLVVFDGV---RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELKL----GIGEVI 150 (179)
T ss_dssp CSCEEEECC---CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHHHH----THHHHH
T ss_pred CCeEEEeCC---CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhcc----ChHhHH
Confidence 455777773 55555566666654 4579999999998888755321 12222323333221 111 133445
Q ss_pred cCccEEeecC
Q 021362 302 KNADLVIKSI 311 (313)
Q Consensus 302 ~~ad~ii~~~ 311 (313)
..||++|++.
T Consensus 151 ~~ad~vId~~ 160 (179)
T 3lw7_A 151 AMADYIITND 160 (179)
T ss_dssp HTCSEEEECC
T ss_pred HhCCEEEECC
Confidence 6789998865
No 205
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.92 E-value=6.4e-06 Score=71.80 Aligned_cols=37 Identities=19% Similarity=0.439 Sum_probs=29.5
Q ss_pred ccccc-ccccCCCcEEEEECCCCCcHHHHHHHH-HHHhc
Q 021362 96 PTSAL-ASNVNVKHIVGLAGPPGAGKSTLAAEV-VRRIN 132 (313)
Q Consensus 96 ~L~~v-sl~i~~Geiv~l~GpNGsGKSTLlk~l-~gl~~ 132 (313)
.|+.+ .--+++|++++|+||||||||||+..+ .+..+
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~ 49 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLK 49 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 56666 667899999999999999999996655 44443
No 206
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.86 E-value=3.5e-05 Score=65.72 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=23.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..-++||.|+.||||||+.+.|+..+.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 446899999999999999999998763
No 207
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.85 E-value=1.1e-05 Score=67.80 Aligned_cols=32 Identities=28% Similarity=0.467 Sum_probs=28.3
Q ss_pred ccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 101 sl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+...+|.+++|+|++||||||+++.|++.+.
T Consensus 7 ~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 7 YKCIEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp -CCCSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34557899999999999999999999999986
No 208
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.81 E-value=7e-05 Score=62.48 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=23.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+.++.|+|++||||||+.+.|+..+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999998774
No 209
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.81 E-value=5.8e-06 Score=77.23 Aligned_cols=56 Identities=11% Similarity=0.088 Sum_probs=38.9
Q ss_pred EccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHH--HhcccCCCCceee
Q 021362 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR--RINKIWPQKASSF 142 (313)
Q Consensus 80 ~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~g--l~~~~~p~~G~i~ 142 (313)
++++.+.|+... ...+|++++++++ .++|+|++|||||||++.|.| +++ +.+|.+.
T Consensus 11 l~~~~~~~~~~~-~~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp---~~~~~vT 68 (360)
T 3t34_A 11 IQRACTALGDHG-DSSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLP---RGSGIVT 68 (360)
T ss_dssp TTTTTTSCSSCC-SSCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSC---CCSSSCC
T ss_pred HHHHHHhhCccc-cccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCC---CCCCccc
Confidence 456666776421 1238999999998 899999999999999999999 555 5556554
No 210
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.80 E-value=7e-06 Score=78.53 Aligned_cols=46 Identities=17% Similarity=0.355 Sum_probs=38.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
-|+++|+ +.|++.. .+++.+|++++|+||||||||||+++|++++.
T Consensus 6 ~l~~~~~-~~~~~~~---------~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 6 GLELSNF-KSYRGVT---------KVGFGESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp EEEEESC-SSCCSEE---------EEECTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEeCE-EEECCce---------eEEecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 3788899 7886422 13467899999999999999999999999986
No 211
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.74 E-value=1.8e-05 Score=66.53 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=27.0
Q ss_pred ccccccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 021362 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 99 ~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl 130 (313)
++|++..+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999987
No 212
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.73 E-value=4e-06 Score=78.61 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=37.5
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+.+.++.+.|+.+. ++++++|+| +|+|++|+|||||++.|.|...
T Consensus 17 ~v~~~~l~~~~~~k~----~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 17 YVGFANLPNQVHRKS----VKKGFEFTL------MVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp ----CCHHHHHHTHH----HHHCCEECE------EECCCTTSCHHHHHHHHTTCCC
T ss_pred eEEeccchHHhCCee----ecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC
Confidence 588999999998776 889999887 9999999999999999988653
No 213
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.70 E-value=1.7e-05 Score=67.72 Aligned_cols=30 Identities=27% Similarity=0.434 Sum_probs=26.5
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
...+|.+++|+||+|||||||++.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 457899999999999999999999998773
No 214
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.67 E-value=1.2e-05 Score=75.48 Aligned_cols=58 Identities=12% Similarity=0.048 Sum_probs=45.7
Q ss_pred CCCCCCcCCCcch------hhhhhccC-ceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHH
Q 021362 206 APSFDHGVGDPVE------DDILVGLQ-HKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDT 263 (313)
Q Consensus 206 ~~~LSgG~kqRv~------ia~al~~~-ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~ 263 (313)
+..|||||+||++ +|++++.+ +++|++|+++..||. .+++.|.++.. .++++||+++.
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~ 348 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHREL 348 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGG
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHH
Confidence 4589999999884 56777888 999999999999999 45555555433 35799999874
No 215
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.66 E-value=3.6e-05 Score=66.09 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=25.7
Q ss_pred cccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 100 vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.++++.+ .+.+|+|||||||||++.+|.-.+.
T Consensus 17 ~~i~f~~-~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 17 TVVEFKE-GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEECCS-EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEeCC-CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3445555 4899999999999999999987664
No 216
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.59 E-value=0.00014 Score=66.73 Aligned_cols=36 Identities=17% Similarity=0.317 Sum_probs=31.8
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.|+.+.--+.+|+++.|.|++|+|||||+..++...
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 677777679999999999999999999998888655
No 217
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.58 E-value=5.2e-05 Score=70.40 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=32.3
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.|+.+.--+.+|+++.|.|++|+|||||+..++....
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5666666799999999999999999999999988764
No 218
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.55 E-value=3.8e-05 Score=71.80 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=31.4
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCcee
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i 141 (313)
-+++|+++.|.||||||||||+..+++... +..|.+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~---~~gg~V 92 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQ---KMGGVA 92 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHH---HTTCCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHH---hcCCeE
Confidence 478999999999999999999999999986 555543
No 219
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.54 E-value=1.7e-05 Score=67.18 Aligned_cols=41 Identities=20% Similarity=0.183 Sum_probs=30.3
Q ss_pred EEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHH
Q 021362 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 85 ~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~g 129 (313)
..|++.. .+++++++..+++. ++|+|++|+|||||++.+.+
T Consensus 7 ~~~~~~~---~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 7 WIYSGFS---SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp ------C---HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHH---HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence 4455432 28899999988875 68999999999999999976
No 220
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.52 E-value=5.3e-05 Score=63.20 Aligned_cols=28 Identities=39% Similarity=0.684 Sum_probs=24.5
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+|.+++|+|++||||||+.+.|+..+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999999997663
No 221
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.47 E-value=7.4e-05 Score=65.28 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=25.8
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
-.+|.+++|+|++||||||+++.|++.+.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46789999999999999999999999764
No 222
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.45 E-value=4.3e-05 Score=69.67 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=23.8
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++.+++|+|++|+|||||++.|.|..
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 445689999999999999999999864
No 223
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.43 E-value=6.1e-05 Score=71.30 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=32.6
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHH-----------hcccCCCCceeecCC
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR-----------INKIWPQKASSFDSQ 145 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl-----------~~~~~p~~G~i~~~g 145 (313)
.+..|..++|+|+||+|||||++.|+|. +. |..|.+.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~---p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTID---PNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------C---CSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccC---ceeEEEEECC
Confidence 4577889999999999999999999987 44 7778777655
No 224
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.43 E-value=5.7e-05 Score=62.45 Aligned_cols=27 Identities=37% Similarity=0.429 Sum_probs=23.3
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.+|..++|+|++|+|||||++.++|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367889999999999999999999864
No 225
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=97.42 E-value=0.002 Score=55.59 Aligned_cols=73 Identities=21% Similarity=0.195 Sum_probs=49.8
Q ss_pred ceEEEEcCCccccChhhHHHHHhhccceEEEEcChHHHHHHHhhcccccCCchHHHHHHHHhcCCchhHHhhhcccCccE
Q 021362 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADL 306 (313)
Q Consensus 227 ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~~~~rv~griv~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~ad~ 306 (313)
..+++.|-|+++=. .-+..+++.+|+|+-+.+...+|+..|. |...+-+..++.. .++..+ ....||+
T Consensus 112 ~~~vv~d~pLL~E~----~~~~~~~D~vi~V~ap~e~r~~Rl~~Rd---g~s~eea~~ri~~-Q~~~ee----k~~~AD~ 179 (210)
T 4i1u_A 112 GPYVIFVVPLLVES----RNWKARCDRVLVVDCPVDTQIARVMQRN---GFTREQVEAIIAR-QATREA----RLAAADD 179 (210)
T ss_dssp SSSEEEECTTCTTC----HHHHHHCSEEEEEECCHHHHHHHHHHHH---CCCHHHHHHHHHH-SCCHHH----HHHTCSE
T ss_pred CCEEEEEEeccccc----CCccccCCeEEEEECCHHHHHHHHHhcC---CCCHHHHHHHHHH-cCChHH----HHHhCCE
Confidence 34577787765421 2345678999999999999988887554 6666666665543 345433 3478999
Q ss_pred EeecC
Q 021362 307 VIKSI 311 (313)
Q Consensus 307 ii~~~ 311 (313)
||+|.
T Consensus 180 VIdN~ 184 (210)
T 4i1u_A 180 VIVND 184 (210)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 99886
No 226
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.41 E-value=8.8e-05 Score=60.75 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=22.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 789999999999999999998874
No 227
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.40 E-value=6.2e-05 Score=66.65 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=30.4
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++.+.. ...++.++.|+|++||||||+.+.|+..+.
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 444544 677899999999999999999999999874
No 228
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.40 E-value=9.3e-05 Score=74.77 Aligned_cols=43 Identities=19% Similarity=0.329 Sum_probs=33.1
Q ss_pred ccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCC
Q 021362 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145 (313)
Q Consensus 101 sl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g 145 (313)
+++++++..++|+|++|+|||||++.|++.... .+..|+| .+|
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~-~~~~G~V-~~g 45 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGA-KERRGRV-EEG 45 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTS-SSSCCCG-GGT
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCC-CCcccee-cCC
Confidence 457889999999999999999999999988751 1367877 444
No 229
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.40 E-value=9.2e-05 Score=62.16 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=23.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+++|+|++|||||||++.|.+.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 5899999999999999999999875
No 230
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.39 E-value=8.4e-05 Score=62.41 Aligned_cols=34 Identities=21% Similarity=0.098 Sum_probs=20.7
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl 130 (313)
++++++++.++. .++|+|++|+|||||++.+.+-
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 788899988777 6689999999999999999873
No 231
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.38 E-value=9.9e-05 Score=65.08 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=25.9
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.++++++.+.+| +.|.||+|+|||||++.|++...
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 455566666666 78999999999999999999875
No 232
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.34 E-value=0.00013 Score=68.44 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=26.8
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHH
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~g 129 (313)
.+++..+++.+| +.+|.|||||||||++..|.=
T Consensus 15 ~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 15 SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHHH
T ss_pred cccceEEecCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 345556666665 889999999999999999985
No 233
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.31 E-value=0.00014 Score=60.07 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999999874
No 234
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.28 E-value=0.00011 Score=60.10 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-.++|+|++|+|||||++.++|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999864
No 235
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.25 E-value=0.00019 Score=60.02 Aligned_cols=28 Identities=21% Similarity=0.475 Sum_probs=25.0
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.++.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5678999999999999999999998764
No 236
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.24 E-value=0.00019 Score=59.69 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=23.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+|.++.|.|++||||||+.+.|+..+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999998774
No 237
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.23 E-value=0.00018 Score=59.74 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=25.4
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+.++.++.|.|++||||||+.+.|+..+.
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 45678899999999999999999997764
No 238
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.23 E-value=0.00018 Score=63.71 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=22.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+++|+||+|||||||.+.|++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3689999999999999999999774
No 239
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.22 E-value=0.0002 Score=61.42 Aligned_cols=24 Identities=42% Similarity=0.601 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~g 129 (313)
.+-+++|.|++||||||+++.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999998
No 240
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.21 E-value=0.00028 Score=66.37 Aligned_cols=37 Identities=24% Similarity=0.165 Sum_probs=31.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCC
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g 145 (313)
.+..++|+||+|||||||++.|++... +..+.|.+.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~---~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY---MQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH---HCCCEEEEEe
Confidence 566789999999999999999999887 7777776544
No 241
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.21 E-value=0.00017 Score=67.19 Aligned_cols=30 Identities=23% Similarity=0.449 Sum_probs=26.7
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
-+++|+++.|.||||||||||+..++....
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999988887664
No 242
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.21 E-value=0.00018 Score=68.97 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=28.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCcee
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i 141 (313)
++.+++++|||||||||++..|++.+. +..++|
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~---~~G~kV 128 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK---KRGYKV 128 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH---HTTCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeE
Confidence 588999999999999999999999997 544433
No 243
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.20 E-value=0.00017 Score=69.07 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=22.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-.++|+|+||+|||||++.|+|..
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 379999999999999999999975
No 244
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.20 E-value=0.00022 Score=60.06 Aligned_cols=24 Identities=38% Similarity=0.708 Sum_probs=22.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999999885
No 245
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.19 E-value=8.8e-05 Score=66.98 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=32.9
Q ss_pred cccccccccCCC-----------cEEEEECCCCCcHHHHHHHHHHHhcccCCCCce
Q 021362 96 PTSALASNVNVK-----------HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (313)
Q Consensus 96 ~L~~vsl~i~~G-----------eiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~ 140 (313)
+++.+...+..+ ..+.|.||+|+|||||+++|++.+. +..|.
T Consensus 25 ~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~---~~~~~ 77 (311)
T 4fcw_A 25 AIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF---DTEEA 77 (311)
T ss_dssp HHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH---SCGGG
T ss_pred HHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc---CCCcc
Confidence 555555555543 6899999999999999999999987 55554
No 246
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.18 E-value=0.00019 Score=59.40 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++.|+|++||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999999875
No 247
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.14 E-value=0.0002 Score=59.26 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl 130 (313)
-.++|+|++|+|||||++.++|.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999984
No 248
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.13 E-value=0.00011 Score=62.47 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=22.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999885
No 249
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.12 E-value=6.5e-05 Score=72.88 Aligned_cols=48 Identities=27% Similarity=0.398 Sum_probs=37.6
Q ss_pred EEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 79 ~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+++++.+.|.... .++++++.+++| +.|.||+|+|||||+++|++...
T Consensus 27 ~l~e~v~~l~~~~----~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 27 ELKEVVEFLKDPS----KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp HHHHHHHHHHCTH----HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhChH----HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC
Confidence 3445544454433 678888888888 77999999999999999999874
No 250
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.11 E-value=0.00027 Score=59.53 Aligned_cols=72 Identities=19% Similarity=0.321 Sum_probs=42.4
Q ss_pred ceEEEEcCCccccChhhHHHHHhhccceEEEEcChHHHHHHHhhcccccCCchHHHHHHHHhcCCchhHHhhhcccCccE
Q 021362 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADL 306 (313)
Q Consensus 227 ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~~~~rv~griv~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~ad~ 306 (313)
.++++.|.++++-+ . +....+..++++-+.+....|+..|. |...+-+..++.. ..+.. +....||+
T Consensus 106 ~~~vi~d~~~l~~~-~----~~~~~d~~i~l~~~~e~~~~R~~~R~---~~~~~~~~~~i~~-~~~~~----~~~~~ad~ 172 (203)
T 1uf9_A 106 APLVFLEIPLLFEK-G----WEGRLHGTLLVAAPLEERVRRVMARS---GLSREEVLARERA-QMPEE----EKRKRATW 172 (203)
T ss_dssp CSEEEEECTTTTTT-T----CGGGSSEEEEECCCHHHHHHHHHTTT---CCTTHHHHHHHTT-SCCHH----HHHHHCSE
T ss_pred CCEEEEEecceecc-C----chhhCCEEEEEECCHHHHHHHHHHcC---CCCHHHHHHHHHH-CCChh----HHHHhCCE
Confidence 57888898865543 1 22345667899999999888887552 3233333344443 23322 22345788
Q ss_pred EeecC
Q 021362 307 VIKSI 311 (313)
Q Consensus 307 ii~~~ 311 (313)
+|++.
T Consensus 173 vId~~ 177 (203)
T 1uf9_A 173 VLENT 177 (203)
T ss_dssp EECCS
T ss_pred EEECC
Confidence 88764
No 251
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.11 E-value=0.00023 Score=73.46 Aligned_cols=32 Identities=34% Similarity=0.490 Sum_probs=29.2
Q ss_pred ccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 101 sl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+|.+.+|+.+.|.||||+|||||+++|++.+.
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 35688999999999999999999999999875
No 252
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.11 E-value=0.00014 Score=60.47 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.++|+|++|+|||||++.++|...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~ 27 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKK 27 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 579999999999999999998643
No 253
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.10 E-value=0.00034 Score=59.18 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=24.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+|.+++|.|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 477899999999999999999999885
No 254
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.10 E-value=0.00033 Score=58.64 Aligned_cols=29 Identities=28% Similarity=0.570 Sum_probs=25.6
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..++.+++|.|+.||||||+.+.|+..+.
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35678999999999999999999998774
No 255
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.09 E-value=0.00031 Score=59.25 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=23.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+|-+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999865
No 256
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.09 E-value=0.00055 Score=63.45 Aligned_cols=25 Identities=32% Similarity=0.721 Sum_probs=22.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4899999999999999999999874
No 257
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.08 E-value=0.00017 Score=60.50 Aligned_cols=30 Identities=27% Similarity=0.505 Sum_probs=26.2
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+..+.+++|.|+.||||||+.+.|+..+.
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 445678999999999999999999998774
No 258
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.08 E-value=0.00034 Score=58.45 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=23.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+++|+|++|||||||+..|+..++
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4799999999999999999999885
No 259
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.08 E-value=0.00029 Score=57.98 Aligned_cols=22 Identities=45% Similarity=0.634 Sum_probs=20.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHH
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~g 129 (313)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 260
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.07 E-value=0.00036 Score=58.11 Aligned_cols=27 Identities=37% Similarity=0.532 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++.+++|.|++||||||+.+.|+..+.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999988764
No 261
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.05 E-value=0.00036 Score=59.19 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=25.4
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+|.+++|.|+.||||||+.+.|+..+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999999998764
No 262
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.04 E-value=0.00037 Score=58.89 Aligned_cols=24 Identities=38% Similarity=0.667 Sum_probs=22.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+++|.|++||||||+.+.|++.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999999874
No 263
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.04 E-value=0.00034 Score=63.45 Aligned_cols=32 Identities=28% Similarity=0.427 Sum_probs=28.1
Q ss_pred ccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 101 sl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++.+.++..+.|.||+|+|||||+++|++...
T Consensus 43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 43 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp HHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred HcCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 34567889999999999999999999999764
No 264
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.02 E-value=0.00037 Score=63.03 Aligned_cols=29 Identities=28% Similarity=0.505 Sum_probs=25.4
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
....|.++.|.||+||||||+.+.|+..+
T Consensus 29 ~~~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 29 AVESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34568899999999999999999998765
No 265
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.02 E-value=0.00035 Score=59.25 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 021362 110 VGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+.|+||||||||||++.|....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999988765
No 266
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.01 E-value=0.00042 Score=58.87 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=25.5
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+|.+++|.|+.||||||+.+.|+..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999999998774
No 267
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.99 E-value=0.00028 Score=58.44 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=19.7
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.++.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3567999999999999999999988764
No 268
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.97 E-value=0.00032 Score=65.71 Aligned_cols=37 Identities=19% Similarity=0.316 Sum_probs=26.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhccc--------CCCCceeecCC
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRINKI--------WPQKASSFDSQ 145 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~~~--------~p~~G~i~~~g 145 (313)
+++|+|++|||||||++.|+|..... -++.|.+.++|
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g 225 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN 225 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC
Confidence 49999999999999999999876300 03456677765
No 269
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.95 E-value=0.00045 Score=57.41 Aligned_cols=24 Identities=42% Similarity=0.560 Sum_probs=22.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++.|.|++||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999874
No 270
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.92 E-value=0.00055 Score=57.28 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=22.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+++|.|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999874
No 271
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.89 E-value=0.00041 Score=60.46 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.++|+|++|+|||||++.|.|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 579999999999999999999765
No 272
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.89 E-value=0.00066 Score=58.29 Aligned_cols=27 Identities=41% Similarity=0.596 Sum_probs=24.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+|-++.|+|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 567899999999999999999998774
No 273
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.85 E-value=0.00078 Score=56.92 Aligned_cols=28 Identities=39% Similarity=0.618 Sum_probs=24.6
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..+-+++|.|+.||||||+.+.|+..+.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567899999999999999999998764
No 274
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.80 E-value=0.00093 Score=62.48 Aligned_cols=39 Identities=26% Similarity=0.278 Sum_probs=28.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc--------ccCCCCceeecCC
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRIN--------KIWPQKASSFDSQ 145 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~--------~~~p~~G~i~~~g 145 (313)
|..++|+|.+|+|||||++.|++-.. ..-|+.|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 35689999999999999999998320 0115667766654
No 275
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.80 E-value=0.00085 Score=56.67 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=24.1
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+..+++|.|+.||||||+.+.|+..+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4556899999999999999999987663
No 276
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.80 E-value=0.00085 Score=54.95 Aligned_cols=26 Identities=35% Similarity=0.386 Sum_probs=23.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
=++++|.|+.||||||+.+.|+..+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999998774
No 277
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.80 E-value=0.00087 Score=55.66 Aligned_cols=26 Identities=38% Similarity=0.641 Sum_probs=23.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+.+++|.|+.||||||+.+.|+..+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998764
No 278
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.79 E-value=0.00082 Score=55.95 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+++|.|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998773
No 279
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.78 E-value=0.00072 Score=58.43 Aligned_cols=28 Identities=21% Similarity=0.417 Sum_probs=23.5
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.++.+++|.|+.||||||+.+.|+..+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4567899999999999999999997663
No 280
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.78 E-value=0.0005 Score=61.29 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999975
No 281
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.77 E-value=0.00074 Score=55.32 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=22.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998774
No 282
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.76 E-value=0.00085 Score=57.23 Aligned_cols=24 Identities=38% Similarity=0.638 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987664
No 283
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.74 E-value=0.00072 Score=56.17 Aligned_cols=42 Identities=14% Similarity=0.128 Sum_probs=29.0
Q ss_pred eEEEEcCCccccChhhHHHHHhhccceEEEEcChHHHHHHHhhc
Q 021362 228 KVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKR 271 (313)
Q Consensus 228 r~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~~~~rv~gr 271 (313)
..++..+...++|+..++.+. .+..|+++-+.+...+|+..|
T Consensus 73 ~~vi~~g~~~v~~~~~~~~l~--~~~vV~L~~~~e~~~~Rl~~r 114 (184)
T 2iyv_A 73 DGVLSLGGGAVTSPGVRAALA--GHTVVYLEISAAEGVRRTGGN 114 (184)
T ss_dssp CSEEECCTTGGGSHHHHHHHT--TSCEEEEECCHHHHHHHTTCC
T ss_pred CeEEecCCcEEcCHHHHHHHc--CCeEEEEeCCHHHHHHHHhCC
Confidence 344455556778876665554 456789999999998887743
No 284
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.73 E-value=0.0032 Score=60.31 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=31.8
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.|+.+.--+.+|+++.|.|++|+|||||+..++....
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5666665689999999999999999999999888764
No 285
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.73 E-value=0.0008 Score=57.87 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=23.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+.++.|+|++||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999998774
No 286
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.71 E-value=0.0011 Score=54.14 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+++|.|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 287
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.71 E-value=0.0017 Score=59.47 Aligned_cols=26 Identities=27% Similarity=0.661 Sum_probs=22.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+.+++|+||+|||||||...|+..+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45889999999999999999987653
No 288
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.67 E-value=0.001 Score=56.82 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.++|.||+||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987653
No 289
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.65 E-value=0.0013 Score=57.71 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=24.9
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.++-+++|.||+||||||+.+.|+..+.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999997664
No 290
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.65 E-value=0.0022 Score=58.92 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.++.|+||+|||||||.+.|+..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998774
No 291
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.0011 Score=55.15 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=22.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+.-.++|+|+.|+|||||++.+.+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33478999999999999999999864
No 292
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.63 E-value=0.0011 Score=58.70 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=24.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999998753
No 293
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.63 E-value=0.0014 Score=56.79 Aligned_cols=30 Identities=23% Similarity=0.524 Sum_probs=26.5
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+.+..++.|+||.||||+|..+.|+..+.
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 456778999999999999999999998774
No 294
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.63 E-value=0.00076 Score=58.70 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=23.9
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl 130 (313)
.+..|+.+.|.||+||||||++..+...
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHhc
Confidence 4668999999999999999998877543
No 295
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.62 E-value=0.0017 Score=54.69 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=23.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..+.|.||+|+|||||++.|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999999885
No 296
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.57 E-value=0.0013 Score=52.97 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57899999999999999998853
No 297
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.56 E-value=0.0034 Score=57.36 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=23.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+.++.|+||+|||||||...|+..+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 46889999999999999999998763
No 298
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.56 E-value=0.0015 Score=60.55 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=26.8
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-+++|+++.|.||+|+|||||+..++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999999999863
No 299
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.55 E-value=0.0027 Score=58.71 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=23.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++.++.|+||.|||||||...|+..+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 456899999999999999999998663
No 300
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.54 E-value=0.0017 Score=55.63 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=24.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+..+.|.||+|+|||||++.++..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999999999875
No 301
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.53 E-value=0.0014 Score=52.35 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++|+|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998854
No 302
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.53 E-value=0.0016 Score=56.29 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998764
No 303
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.53 E-value=0.0014 Score=52.41 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999988743
No 304
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.51 E-value=0.0013 Score=52.50 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998754
No 305
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.50 E-value=0.0015 Score=52.39 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998753
No 306
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.50 E-value=0.0019 Score=59.71 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=25.1
Q ss_pred CCCc--EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKH--IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Ge--iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..+. .+.|.||+|+|||||++.+++.+.
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456 899999999999999999999986
No 307
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.49 E-value=0.00074 Score=57.46 Aligned_cols=37 Identities=24% Similarity=0.421 Sum_probs=27.7
Q ss_pred cccccccccCCCc---EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 96 PTSALASNVNVKH---IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 ~L~~vsl~i~~Ge---iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+++.+.-.+..|. .+.|.||+|+|||||++.++..+.
T Consensus 31 ~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 31 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp HHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3333433444444 889999999999999999998875
No 308
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.48 E-value=0.0016 Score=52.50 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999998864
No 309
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.48 E-value=0.0019 Score=55.75 Aligned_cols=28 Identities=39% Similarity=0.510 Sum_probs=25.5
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+|.++.|.|+.||||||+++.|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999885
No 310
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.48 E-value=0.0014 Score=60.33 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=25.7
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..+..+.|.||+|+|||||++.+++.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999999886
No 311
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.47 E-value=0.0037 Score=59.18 Aligned_cols=25 Identities=32% Similarity=0.682 Sum_probs=22.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+++|+||+|||||||...|+..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4789999999999999999998774
No 312
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.46 E-value=0.0016 Score=52.46 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999998753
No 313
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.45 E-value=0.0016 Score=52.28 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 314
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.45 E-value=0.0017 Score=52.98 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998754
No 315
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.44 E-value=0.0017 Score=55.74 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=23.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+|-++.|.|+.||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356789999999999999999998774
No 316
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.44 E-value=0.0017 Score=52.14 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-++|+|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 317
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.43 E-value=0.0017 Score=52.80 Aligned_cols=23 Identities=39% Similarity=0.404 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 318
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.43 E-value=0.0013 Score=58.93 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-.++|+|++|+|||||++.++|..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999864
No 319
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.43 E-value=0.001 Score=60.77 Aligned_cols=37 Identities=19% Similarity=0.414 Sum_probs=28.8
Q ss_pred cccccccccCCC--cEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 96 PTSALASNVNVK--HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 ~L~~vsl~i~~G--eiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+++.+...+..| ..+.|.||+|+|||||++.+++.+.
T Consensus 45 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 45 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 455555555555 3489999999999999999999874
No 320
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.43 E-value=0.0015 Score=52.53 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
No 321
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.42 E-value=0.0015 Score=52.69 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999874
No 322
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.41 E-value=0.0017 Score=56.71 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=23.0
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..+|.++.|.|++||||||+++.|+..+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999998885
No 323
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.41 E-value=0.0019 Score=52.56 Aligned_cols=27 Identities=22% Similarity=0.291 Sum_probs=22.9
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
++.-.++|+|+.|+|||||++.+.+-.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 345678999999999999999998743
No 324
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.40 E-value=0.0021 Score=57.55 Aligned_cols=27 Identities=37% Similarity=0.500 Sum_probs=24.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++..+.|.||+|+|||||++.|++...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 567899999999999999999999774
No 325
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.40 E-value=0.0014 Score=53.18 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 57999999999999999998754
No 326
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.38 E-value=0.0017 Score=52.84 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999886
No 327
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.36 E-value=0.0019 Score=55.18 Aligned_cols=26 Identities=38% Similarity=0.595 Sum_probs=23.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+.+++|.|+.||||||+.+.|+..+.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999998763
No 328
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.35 E-value=0.0026 Score=55.15 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=24.4
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..+.++.|.|+.||||||+.+.|+..+.
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456899999999999999999998774
No 329
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.35 E-value=0.002 Score=51.72 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 330
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.35 E-value=0.0027 Score=58.14 Aligned_cols=29 Identities=17% Similarity=0.428 Sum_probs=26.7
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-+++|+++.|.||+|+|||||+..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 58899999999999999999999998764
No 331
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.35 E-value=0.002 Score=52.84 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57899999999999999998754
No 332
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.34 E-value=0.002 Score=53.46 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57999999999999999998854
No 333
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.34 E-value=0.0016 Score=62.75 Aligned_cols=36 Identities=28% Similarity=0.393 Sum_probs=31.3
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+++.+ +.+-+|+.++|+|++|+|||||++.|+....
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 55555 5778999999999999999999999998875
No 334
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.33 E-value=0.0046 Score=52.59 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=23.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.--.++|+|+.|+|||||++.|++...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 345899999999999999999998764
No 335
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.33 E-value=0.0029 Score=51.73 Aligned_cols=28 Identities=32% Similarity=0.521 Sum_probs=24.3
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..+..+.|.||.|+|||||++.++..+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999998874
No 336
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.33 E-value=0.0021 Score=53.22 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=21.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
--++|+|+.|+|||||++.+.+-.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 358999999999999999999864
No 337
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.33 E-value=0.0022 Score=54.83 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.++|.|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998664
No 338
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.33 E-value=0.0016 Score=52.58 Aligned_cols=23 Identities=43% Similarity=0.408 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999997643
No 339
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.32 E-value=0.0021 Score=52.84 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998743
No 340
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.31 E-value=0.0024 Score=56.04 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=25.4
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+|.++.|.|++||||||+++.|...+.
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999885
No 341
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.29 E-value=0.0023 Score=58.54 Aligned_cols=33 Identities=27% Similarity=0.339 Sum_probs=29.4
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHH
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~g 129 (313)
.+++..+.+ .|.-+.|.|+||+|||||+..+.+
T Consensus 134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 677877777 788999999999999999998887
No 342
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.29 E-value=0.0012 Score=53.26 Aligned_cols=23 Identities=43% Similarity=0.403 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 47899999999999999997644
No 343
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.28 E-value=0.0024 Score=51.25 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 021362 110 VGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl~ 131 (313)
++|+|+.|+|||||++.+.+-.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999998754
No 344
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.28 E-value=0.0016 Score=54.09 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl 130 (313)
.-.++|+|+.|+|||||++.+.+-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999999875
No 345
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.26 E-value=0.0026 Score=56.55 Aligned_cols=29 Identities=38% Similarity=0.576 Sum_probs=25.4
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+..+.-+.|.||+|+|||||++.|+..+.
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 45667799999999999999999999874
No 346
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.26 E-value=0.0024 Score=52.79 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
-++|+|+.|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 578999999999999999998764
No 347
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.26 E-value=0.0019 Score=56.81 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-.++|+|.+|+|||||++.|.|..
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999999865
No 348
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.25 E-value=0.0024 Score=52.21 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 57999999999999999998753
No 349
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.25 E-value=0.0012 Score=54.60 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl 130 (313)
.-.++|+|++|+|||||++.+.+-
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 446899999999999999998875
No 350
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.25 E-value=0.0024 Score=52.77 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57899999999999999998753
No 351
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.25 E-value=0.0017 Score=53.67 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998754
No 352
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.25 E-value=0.0028 Score=54.73 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=25.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+|.++.|-|++||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999999885
No 353
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.24 E-value=0.0015 Score=53.27 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998764
No 354
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.24 E-value=0.0025 Score=51.73 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999998754
No 355
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.24 E-value=0.0028 Score=54.31 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=26.2
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl 130 (313)
.++..-+.+ .|..+.|+||+|+|||||...|+..
T Consensus 24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 445544444 4778999999999999999888754
No 356
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.24 E-value=0.0025 Score=51.93 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
No 357
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.23 E-value=0.0024 Score=57.35 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=20.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl 130 (313)
.++.|.|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999874
No 358
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.23 E-value=0.0023 Score=51.96 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999998743
No 359
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.23 E-value=0.0023 Score=60.00 Aligned_cols=23 Identities=43% Similarity=0.631 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++|+|++|+|||||++.|++..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999999974
No 360
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.22 E-value=0.0033 Score=50.63 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl 130 (313)
.-.++|+|+.|+|||||++.+.+-
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999764
No 361
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.22 E-value=0.0013 Score=67.71 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=29.9
Q ss_pred cccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 100 vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.++.+.++..+.|.||+|+|||||+++|++.+.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 356778999999999999999999999999985
No 362
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.22 E-value=0.0026 Score=52.81 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-++|+|++|+|||||++.+.+-
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999877664
No 363
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.20 E-value=0.0024 Score=52.01 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 57999999999999999998643
No 364
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.20 E-value=0.0018 Score=60.12 Aligned_cols=27 Identities=33% Similarity=0.322 Sum_probs=23.3
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
...-.++|+|++|+|||||++.|+|..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999998854
No 365
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.19 E-value=0.0028 Score=51.70 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999998754
No 366
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.18 E-value=0.0027 Score=53.86 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-.++|+|+.|+|||||++.+.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 367899999999999999999865
No 367
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.18 E-value=0.0018 Score=53.34 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 37899999999999999998753
No 368
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.18 E-value=0.0063 Score=58.30 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=25.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++.++.++|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999999886
No 369
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.17 E-value=0.0023 Score=58.10 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+++|+|.+|+|||||++.|.|.-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999999853
No 370
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.17 E-value=0.0028 Score=60.22 Aligned_cols=30 Identities=33% Similarity=0.313 Sum_probs=25.3
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 102 l~i~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+.-..+.++.|+|++||||||+.+.|+..+
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 344567899999999999999999988655
No 371
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.16 E-value=0.0034 Score=54.32 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=26.0
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+|.++.|.|+.||||||+++.|...+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999999999999885
No 372
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.16 E-value=0.0028 Score=52.92 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57999999999999999998753
No 373
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.15 E-value=0.0029 Score=52.94 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998854
No 374
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.15 E-value=0.0026 Score=52.19 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999998754
No 375
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.15 E-value=0.0034 Score=53.87 Aligned_cols=24 Identities=42% Similarity=0.707 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++.|+||.||||+|..+.|+..+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999998875
No 376
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.14 E-value=0.003 Score=52.33 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999998854
No 377
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.14 E-value=0.0025 Score=58.01 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-+|+|+|..|+|||||++.|.|.-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999999854
No 378
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.14 E-value=0.004 Score=54.22 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=25.9
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+|.++.|.|+.||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5789999999999999999999999885
No 379
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.13 E-value=0.0031 Score=51.70 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++|+|+.|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57899999999999999998753
No 380
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.13 E-value=0.0031 Score=52.26 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999854
No 381
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.11 E-value=0.0028 Score=52.30 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998853
No 382
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.10 E-value=0.0029 Score=52.50 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl 130 (313)
--++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 36899999999999999999884
No 383
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.10 E-value=0.0034 Score=54.69 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=24.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+|.+++|.|+.||||||+++.|+..++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999998873
No 384
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.09 E-value=0.0033 Score=51.43 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-++|+|+.|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999864
No 385
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.09 E-value=0.003 Score=52.59 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57999999999999999998754
No 386
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.08 E-value=0.0024 Score=56.63 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++|+|..|||||||++.+.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999874
No 387
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.06 E-value=0.003 Score=57.40 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=24.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+..+.|.||+|+|||||++.|++.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 356788999999999999999999885
No 388
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.05 E-value=0.0016 Score=57.39 Aligned_cols=34 Identities=35% Similarity=0.551 Sum_probs=26.7
Q ss_pred ccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 97 L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+.++.+...+| +.|.||+|+|||||++.|+....
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHHhC
Confidence 34444555556 67999999999999999999874
No 389
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.03 E-value=0.0037 Score=51.75 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999998743
No 390
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.02 E-value=0.0036 Score=52.38 Aligned_cols=23 Identities=43% Similarity=0.384 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++|+|++|+|||||++.+.|..
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~~ 30 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGVH 30 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 58999999999999999999853
No 391
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.02 E-value=0.0033 Score=51.41 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999999853
No 392
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.02 E-value=0.0038 Score=51.02 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=24.2
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..+..+.|.||.|+|||||++.++..+.
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456778999999999999999998875
No 393
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.02 E-value=0.0037 Score=51.87 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
No 394
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.01 E-value=0.0033 Score=52.72 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=21.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
--++|+|+.|+|||||++.+.+-.
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 367999999999999999999864
No 395
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.01 E-value=0.0034 Score=52.14 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 57899999999999999999865
No 396
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.99 E-value=0.0052 Score=53.64 Aligned_cols=28 Identities=39% Similarity=0.557 Sum_probs=23.9
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
....-+.|.||+|+|||||++.++..+.
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4445678999999999999999999774
No 397
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.99 E-value=0.0028 Score=55.72 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-.++|+|+.|+|||||++.|.|..
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998754
No 398
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.98 E-value=0.0049 Score=50.28 Aligned_cols=23 Identities=17% Similarity=0.120 Sum_probs=20.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl 130 (313)
--++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998864
No 399
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.98 E-value=0.0039 Score=51.65 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=20.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
--++|+|+.|+|||||++.+.+-.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 357999999999999999998754
No 400
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.97 E-value=0.004 Score=51.77 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998854
No 401
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.97 E-value=0.0035 Score=53.02 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|++|+|||||++.+.+-.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57999999999999999988754
No 402
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.97 E-value=0.004 Score=51.87 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
--++|+|+.|+|||||++.+.+-.
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998753
No 403
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.96 E-value=0.0032 Score=55.76 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++|+|++|+|||||++.++|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999854
No 404
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.96 E-value=0.0041 Score=51.36 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-.++|+|+.|+|||||++.+.+-.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998754
No 405
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.95 E-value=0.0041 Score=52.04 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
--++|+|+.|+|||||++.+.+-.
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 467999999999999999998754
No 406
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.95 E-value=0.0039 Score=52.57 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=24.1
Q ss_pred cccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 98 ~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++.|.-...--++|+|+.|+|||||++.+.+-.
T Consensus 16 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 16 ENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp ---CGGGSEEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cccccccccCcEEEEECcCCCCHHHHHHHHhcCC
Confidence 3344443334468999999999999999998843
No 407
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.94 E-value=0.0032 Score=60.19 Aligned_cols=31 Identities=39% Similarity=0.564 Sum_probs=26.1
Q ss_pred cccCCC--cEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 102 SNVNVK--HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 102 l~i~~G--eiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
|.+.++ .+++|+|++|+||||++..|++.+.
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 444433 5999999999999999999999885
No 408
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.93 E-value=0.0038 Score=52.41 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998754
No 409
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.92 E-value=0.0042 Score=52.18 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=21.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+.--++|+|+.|+|||||++.+.+-.
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34468999999999999999998753
No 410
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.91 E-value=0.0036 Score=52.38 Aligned_cols=23 Identities=13% Similarity=0.197 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998754
No 411
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.90 E-value=0.0031 Score=51.94 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=21.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl 130 (313)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4457899999999999999998864
No 412
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.88 E-value=0.0032 Score=51.54 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=21.4
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHH
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~g 129 (313)
.+.-.++|+|++|+|||||++.+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456789999999999999998874
No 413
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.87 E-value=0.0035 Score=51.14 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=20.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
--++|+|+.|+|||||++.+.+-.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 357999999999999999998753
No 414
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.86 E-value=0.0052 Score=57.22 Aligned_cols=30 Identities=30% Similarity=0.544 Sum_probs=26.5
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
-+++|.++.|.|++|+|||||+..++....
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999988887653
No 415
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.86 E-value=0.0049 Score=51.15 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 57999999999999999888753
No 416
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.85 E-value=0.0035 Score=56.01 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=21.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-.++|+|..|||||||++.+.|..
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999864
No 417
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.84 E-value=0.0026 Score=56.70 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-++|+|++|+|||||++.|.+-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999998764
No 418
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.84 E-value=0.0023 Score=53.77 Aligned_cols=23 Identities=43% Similarity=0.408 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++|+|++|+|||||++.+.|..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 68999999999999999987643
No 419
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.83 E-value=0.0044 Score=52.52 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999853
No 420
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.83 E-value=0.0046 Score=59.13 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=23.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+..+.|.||+|+|||||+++|++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999884
No 421
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.81 E-value=0.0038 Score=51.54 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl 130 (313)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4457899999999999999999853
No 422
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.78 E-value=0.0046 Score=56.31 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=25.7
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl 130 (313)
-+++|+++.|.||+|+|||||+..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999988864
No 423
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.78 E-value=0.0052 Score=51.86 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998754
No 424
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.77 E-value=0.0029 Score=55.92 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=24.2
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.++.+++|.|+.||||||+++.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5678999999999999999999987763
No 425
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.76 E-value=0.0037 Score=52.51 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5789999999999999999764
No 426
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.76 E-value=0.0091 Score=51.47 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=23.2
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHH
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVV 128 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~ 128 (313)
-+++|+++.|.|++|+|||||+-.++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 48899999999999999999986654
No 427
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.75 E-value=0.0042 Score=56.02 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++|+|+.|+|||||++.|.|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999863
No 428
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.74 E-value=0.0036 Score=51.52 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
No 429
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.74 E-value=0.007 Score=51.78 Aligned_cols=26 Identities=35% Similarity=0.667 Sum_probs=23.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
|.+++|=|+-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999999884
No 430
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.72 E-value=0.0056 Score=52.21 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+--.++|+|..|+|||||++.++.-..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 345789999999999999999987753
No 431
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.71 E-value=0.0053 Score=51.50 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998754
No 432
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.70 E-value=0.0034 Score=52.29 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999997643
No 433
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.69 E-value=0.002 Score=54.79 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.-.++|+|+.|+|||||++.|.|..
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999998853
No 434
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.68 E-value=0.0041 Score=53.41 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=21.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl 130 (313)
.-.++|+|+.|+|||||++.+.+-
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999875
No 435
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.67 E-value=0.0047 Score=52.26 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999998864
No 436
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.67 E-value=0.0034 Score=51.42 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=9.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999988653
No 437
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.66 E-value=0.0058 Score=50.66 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
No 438
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.64 E-value=0.0039 Score=51.74 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=20.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-.++|+|+.|+|||||++.+.+-.
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999988743
No 439
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.63 E-value=0.0029 Score=52.42 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=21.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-.++|+|+.|+|||||++.+.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999998765
No 440
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.62 E-value=0.005 Score=51.36 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=20.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl 130 (313)
.--++|+|+.|+|||||++.+.+-
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999998754
No 441
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.60 E-value=0.0026 Score=61.06 Aligned_cols=35 Identities=40% Similarity=0.666 Sum_probs=27.8
Q ss_pred cccccccCCCcE--EEEECCCCCcHHHHHHHHHHHhc
Q 021362 98 SALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 98 ~~vsl~i~~Gei--v~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..+.-.+..|.+ +.|.||+|+|||||++.|+....
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 344445555554 88999999999999999999875
No 442
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.58 E-value=0.0087 Score=55.46 Aligned_cols=28 Identities=36% Similarity=0.522 Sum_probs=24.9
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+.-+++|+|+.|+|||||++.|++.+.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4566899999999999999999998874
No 443
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.57 E-value=0.0049 Score=52.40 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-++|+|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 444
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.53 E-value=0.0069 Score=50.91 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 57999999999999999998643
No 445
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.52 E-value=0.0053 Score=51.26 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 57899999999999999887754
No 446
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.50 E-value=0.0085 Score=52.37 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=22.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
-.+||+|+.||||||+.+.|+..+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998774
No 447
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.50 E-value=0.0079 Score=51.35 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57999999999999999998854
No 448
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.49 E-value=0.0083 Score=50.19 Aligned_cols=32 Identities=25% Similarity=0.163 Sum_probs=23.9
Q ss_pred ccccccccCCCcEEEEECCCCCcHHHHHHHHHH
Q 021362 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 97 L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~g 129 (313)
++..-+.+ .|.-+.|.|++|+|||||...+..
T Consensus 7 lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 7 WHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 33333333 477889999999999999977765
No 449
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.48 E-value=0.0058 Score=53.98 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-.++|+|+.|+|||||++.|.|-.
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999854
No 450
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.46 E-value=0.0054 Score=54.75 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-.++|+|..|+|||||++.|.|..
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999864
No 451
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.44 E-value=0.0076 Score=50.76 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=20.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl 130 (313)
-.++|+|+.|+|||||++.+.+-
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999988864
No 452
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.43 E-value=0.01 Score=49.74 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=20.9
Q ss_pred CCcEEEEECCCCCcHHHHH-HHHHHHh
Q 021362 106 VKHIVGLAGPPGAGKSTLA-AEVVRRI 131 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLl-k~l~gl~ 131 (313)
+|.++.|.||.|+||||++ +.+..+.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999998 4444443
No 453
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.41 E-value=0.01 Score=53.41 Aligned_cols=29 Identities=34% Similarity=0.540 Sum_probs=24.4
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++....+.|.||+|+|||+|++.|+..+.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34455778889999999999999999874
No 454
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.40 E-value=0.01 Score=53.16 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=24.3
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..+.-+.|.||+|+|||||++.++..+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455789999999999999999998885
No 455
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.38 E-value=0.009 Score=50.82 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl 130 (313)
--++|+|+.|+|||||++.+.+-
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999999875
No 456
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.36 E-value=0.0066 Score=53.82 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-.++++|+.|+|||||++.|.|-.
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999754
No 457
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.35 E-value=0.01 Score=49.61 Aligned_cols=24 Identities=33% Similarity=0.632 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+.|.||.|+|||||++.++..+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 389999999999999999998763
No 458
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.35 E-value=0.0072 Score=51.83 Aligned_cols=22 Identities=45% Similarity=0.434 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
.++|+|.+|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998864
No 459
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.35 E-value=0.0034 Score=52.42 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=4.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl 130 (313)
--++|+|+.|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999998876
No 460
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.34 E-value=0.0074 Score=53.65 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=22.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..++|+|.+|+|||||++.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 5889999999999999999998654
No 461
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.34 E-value=0.0083 Score=55.10 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=25.0
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..+..+.|.||+|+|||||++.++..+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 5667899999999999999999998874
No 462
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.33 E-value=0.01 Score=47.37 Aligned_cols=27 Identities=30% Similarity=0.249 Sum_probs=23.4
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
..+.-+.|.||+|+|||++++.|....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 455668899999999999999998865
No 463
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.32 E-value=0.0087 Score=50.40 Aligned_cols=24 Identities=13% Similarity=0.025 Sum_probs=20.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
--++|+|+.|+|||||++.+.+-.
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999998643
No 464
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.27 E-value=0.0082 Score=50.02 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=20.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~g 129 (313)
+.-.++|+|+.|+|||||++.+.+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 445789999999999999998864
No 465
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.20 E-value=0.011 Score=50.74 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=26.0
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+++.-.+.|.||.|+||||++.+|+..+.
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 366666789999999999999999999884
No 466
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.18 E-value=0.0034 Score=53.25 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-++|+|+.|+|||||++.+.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988854
No 467
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.12 E-value=0.015 Score=53.18 Aligned_cols=27 Identities=41% Similarity=0.491 Sum_probs=23.8
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++.-+.|.||.|+|||||++.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678899999999999999999977
No 468
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.12 E-value=0.0088 Score=61.33 Aligned_cols=62 Identities=13% Similarity=0.008 Sum_probs=41.8
Q ss_pred cCCCCCCcCCCcchhhhhhccCceEEEEcCCcc-ccCh----hhHHHHHhhccc--eE-E-EEcChHHHHH
Q 021362 205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL-FLDG----GVWKDVSSMFDE--KW-F-IEVDLDTAMQ 266 (313)
Q Consensus 205 ~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~l-llDE----~~~~~l~~l~~~--~i-~-vtHd~~~~~~ 266 (313)
.+-.++.|+.+|..++..+..+.+++++|+... .+|. .+++.+...... .+ + .|||.+.+..
T Consensus 187 ~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~ 257 (773)
T 2xau_A 187 ILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQR 257 (773)
T ss_dssp SEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHH
T ss_pred CEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHH
Confidence 444778999999888888888889999999875 6664 334444443322 23 4 4788776544
No 469
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.11 E-value=0.025 Score=55.03 Aligned_cols=28 Identities=18% Similarity=0.377 Sum_probs=23.6
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+..+++|+|++|+|||||+..|+..+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999998775
No 470
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.09 E-value=0.0064 Score=58.30 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++|+|.+|+|||||++.|.|-.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999998853
No 471
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.01 E-value=0.014 Score=51.93 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=23.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+.-+.|.||+|+|||||++.++..+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45678999999999999999999875
No 472
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.00 E-value=0.037 Score=48.21 Aligned_cols=28 Identities=36% Similarity=0.469 Sum_probs=24.5
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
..+.-++.+.|..|+|||||++.|+..+
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999999876
No 473
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.98 E-value=0.016 Score=57.36 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=25.1
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++|.++.|.|++||||||+.+.|...+.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 4577999999999999999999998874
No 474
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.97 E-value=0.22 Score=43.18 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=20.3
Q ss_pred CCcE-EEEECCCCCcHHHHHHHHHHHh
Q 021362 106 VKHI-VGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 106 ~Gei-v~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+|.+ +.+.|+.|+||||++-.++..+
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHH
Confidence 4554 7788999999999976666655
No 475
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.95 E-value=0.0081 Score=49.53 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=20.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~g 129 (313)
+.--++|+|+.|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 445689999999999999998853
No 476
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.94 E-value=0.014 Score=56.81 Aligned_cols=29 Identities=7% Similarity=0.061 Sum_probs=26.4
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+.|.++.|+|.+||||||+.+.|+..+.
T Consensus 392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 392 PKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 35778999999999999999999999985
No 477
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.94 E-value=0.014 Score=53.99 Aligned_cols=27 Identities=37% Similarity=0.575 Sum_probs=23.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++.-+.|.||+|+||||+++.|+..+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 455688999999999999999998774
No 478
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.89 E-value=0.0045 Score=56.36 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=29.2
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+++.+...+..|.-+.|.||+|+|||||++.|+..+.
T Consensus 35 ~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 35 MINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp HHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4444444455577889999999999999999999875
No 479
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.89 E-value=0.017 Score=57.72 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=24.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+|.++.|.|.+||||||+.+.|+..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999987
No 480
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.88 E-value=0.017 Score=53.15 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=25.1
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+|..+.|.||+|+|||||++.++..+.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567899999999999999999999885
No 481
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.82 E-value=0.017 Score=51.01 Aligned_cols=28 Identities=39% Similarity=0.539 Sum_probs=24.1
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
....-+.|.||+|+|||||++.|+....
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4456788999999999999999999764
No 482
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.80 E-value=0.017 Score=53.98 Aligned_cols=29 Identities=31% Similarity=0.508 Sum_probs=25.5
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-+++|.++.|.||+|+|||||+..++...
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 47899999999999999999998777654
No 483
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.80 E-value=0.015 Score=52.28 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.+-.++|+|.+|+|||||+|.|.|..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCc
Confidence 44579999999999999999999865
No 484
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.79 E-value=0.011 Score=50.33 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHH-HHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAE-VVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~-l~gl~ 131 (313)
.++|+|+.|+|||||++. +.|..
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 579999999999999998 66664
No 485
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.79 E-value=0.019 Score=52.86 Aligned_cols=27 Identities=26% Similarity=0.349 Sum_probs=23.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+..+.|.||.|+|||||++.++..+.
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999998874
No 486
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.77 E-value=0.021 Score=52.90 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=24.3
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
....-+.|.||+|+|||||++.|+....
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 4566789999999999999999998764
No 487
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.72 E-value=0.022 Score=51.79 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=23.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+.-+.|.||.|+|||+|+++|+..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999876
No 488
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.70 E-value=0.022 Score=51.74 Aligned_cols=28 Identities=43% Similarity=0.557 Sum_probs=24.0
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+..-+.|.||+|+|||+|++.|+....
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 3455688999999999999999999874
No 489
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.70 E-value=0.045 Score=52.23 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=24.8
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+..+++++|++|+||||+.-.|+..+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999998885
No 490
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.66 E-value=0.0058 Score=51.24 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=19.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl 130 (313)
--++|+|+.|+|||||++.+.+-
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 35899999999999999888753
No 491
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.64 E-value=0.016 Score=53.17 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=25.2
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 021362 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 102 l~i~~Geiv~l~GpNGsGKSTLlk~l~gl 130 (313)
-.+.+|.++.|.||.|+|||||+..++..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 35778888999999999999999998764
No 492
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.63 E-value=0.023 Score=53.49 Aligned_cols=33 Identities=27% Similarity=0.398 Sum_probs=29.4
Q ss_pred cccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 100 vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.=+.+.+|+..+|+|++|+|||||+..|+....
T Consensus 168 ~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~ 200 (427)
T 3l0o_A 168 LFAPIGKGQRGMIVAPPKAGKTTILKEIANGIA 200 (427)
T ss_dssp HHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred hcccccCCceEEEecCCCCChhHHHHHHHHHHh
Confidence 446789999999999999999999999988765
No 493
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=94.61 E-value=0.013 Score=55.36 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++|+|.+++|||||++.|.|.-
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 37999999999999999998754
No 494
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.58 E-value=0.0096 Score=53.87 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=22.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl 130 (313)
.|.++.|.||.|+|||||++.+...
T Consensus 30 ~~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEECCCcCCHHHHHHHHHHH
Confidence 3689999999999999999998764
No 495
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.57 E-value=0.024 Score=55.40 Aligned_cols=28 Identities=25% Similarity=0.535 Sum_probs=24.1
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
....++.++|.+||||||+.+.|+..+.
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456899999999999999999987764
No 496
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.57 E-value=0.025 Score=53.92 Aligned_cols=29 Identities=34% Similarity=0.541 Sum_probs=24.5
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+.+..=+.|.||+|+|||+|++.|++...
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 44445578999999999999999999885
No 497
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.56 E-value=0.0087 Score=54.95 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=22.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+.|.||.|+|||||++.++..+.
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999885
No 498
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=94.53 E-value=0.014 Score=56.26 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=23.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.|-.++|+|+.|+|||||++.|.|...
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~ 249 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDR 249 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHB
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCc
Confidence 455699999999999999999999753
No 499
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.52 E-value=0.024 Score=54.19 Aligned_cols=30 Identities=40% Similarity=0.566 Sum_probs=25.2
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+.+..=+.|.||+|+|||+|+++|++...
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 345555678899999999999999999875
No 500
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.49 E-value=0.025 Score=54.06 Aligned_cols=30 Identities=30% Similarity=0.498 Sum_probs=25.3
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+.+..=+.|.||+|+|||+|+++|++...
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 345555678999999999999999999875
Done!