Your job contains 1 sequence.
>021363
MEMNGSKREENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGC
GFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVT
EAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRR
KTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGG
EGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRH
SAVVTDMSYPIAR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 021363
(313 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2099986 - symbol:AT3G55580 species:3702 "Arabi... 765 1.1e-80 2
TAIR|locus:2146142 - symbol:AT5G16040 "AT5G16040" species... 112 3.4e-07 3
TAIR|locus:2076889 - symbol:AT3G02510 "AT3G02510" species... 120 6.6e-07 2
UNIPROTKB|E1B8U7 - symbol:RCCD1 "Uncharacterized protein"... 123 2.7e-06 2
UNIPROTKB|E2R5W9 - symbol:RCCD1 "Uncharacterized protein"... 118 5.4e-06 2
UNIPROTKB|O95199 - symbol:RCBTB2 "RCC1 and BTB domain-con... 131 1.1e-05 1
TAIR|locus:2163986 - symbol:UVR8 "UVB-RESISTANCE 8" speci... 118 1.7e-05 2
MGI|MGI:1917200 - symbol:Rcbtb2 "regulator of chromosome ... 129 1.9e-05 1
TAIR|locus:2159295 - symbol:RUG3 "RCC1/UVR8/GEF-like 3" s... 97 7.8e-05 3
UNIPROTKB|F1N7C1 - symbol:HERC6 "Uncharacterized protein"... 104 9.5e-05 3
UNIPROTKB|G3V2I3 - symbol:RCCD1 "RCC1 domain-containing p... 110 0.00011 2
UNIPROTKB|A6NED2 - symbol:RCCD1 "RCC1 domain-containing p... 110 0.00011 2
UNIPROTKB|E1BVG2 - symbol:RCBTB1 "Uncharacterized protein... 100 0.00012 2
RGD|1309901 - symbol:Rccd1 "RCC1 domain containing 1" spe... 109 0.00015 2
FB|FBgn0031107 - symbol:HERC2 "HECT and RLD domain contai... 123 0.00016 3
UNIPROTKB|F1RMH6 - symbol:RCCD1 "Uncharacterized protein"... 114 0.00020 2
TAIR|locus:2156233 - symbol:RUG2 "RCC1/UVR8/GEF-like 2" s... 116 0.00026 2
TAIR|locus:504956339 - symbol:RUG1 "AT5G08710" species:37... 97 0.00031 2
UNIPROTKB|F1RW66 - symbol:HERC3 "Uncharacterized protein"... 123 0.00036 2
ZFIN|ZDB-GENE-070718-6 - symbol:herc2 "hect domain and RL... 121 0.00087 2
>TAIR|locus:2099986 [details] [associations]
symbol:AT3G55580 species:3702 "Arabidopsis thaliana"
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] INTERPRO:IPR000408 Pfam:PF00415
EMBL:CP002686 Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 EMBL:AL132975
HSSP:P18754 IPI:IPI00521720 PIR:T47697 RefSeq:NP_191117.1
UniGene:At.35013 ProteinModelPortal:Q9M2S1 SMR:Q9M2S1 PRIDE:Q9M2S1
EnsemblPlants:AT3G55580.1 GeneID:824723 KEGG:ath:AT3G55580
TAIR:At3g55580 InParanoid:Q9M2S1 OMA:HPIPCIE PhylomeDB:Q9M2S1
ProtClustDB:CLSN2685056 Genevestigator:Q9M2S1 Uniprot:Q9M2S1
Length = 488
Score = 765 (274.4 bits), Expect = 1.1e-80, Sum P(2) = 1.1e-80
Identities = 154/299 (51%), Positives = 194/299 (64%)
Query: 21 VVYMWGYLPGTSPEKSPILSPIPARLCGG--DSWKDVCGGGCGFALATSESGKLITWGSA 78
VVYMWGYLPG SP++SP++SP+ ++ SWKDV GGGCGFA+AT+ESGKLITWGS
Sbjct: 32 VVYMWGYLPGASPQRSPLMSPVEVKIPPAVESSWKDVSGGGCGFAMATAESGKLITWGST 91
Query: 79 DDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAK 138
DD GQSY+TSGKHGETPEPFPLP E V KA AGWAHCV+VTE +VYTWGWREC+P+ +
Sbjct: 92 DDLGQSYVTSGKHGETPEPFPLPPEVCVQKAEAGWAHCVAVTENQQVYTWGWRECIPTGR 151
Query: 139 V---------TRDFG-SAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREE 188
V R+ S S GK+S+ T + R G E K+R+ S +++
Sbjct: 152 VFGQVDGDSCERNISFSTEQVSSSSQGKKSSGGTSSQV--EGRGGGEPTKKRRISPSKQA 209
Query: 189 SENPASGDEF-FTLSPCLVTLNPGVKITKVAAGGRHTLILSDMXXXXXXXXXXXXXXXXX 247
+EN + D + PCLV+L PGV+I VAAGGRHTL LSD+
Sbjct: 210 AENSSQSDNIDLSALPCLVSLAPGVRIVSVAAGGRHTLALSDIGQVWGWGYGGEGQLGLG 269
Query: 248 SRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTD 306
SR+++V +PH IPC+E ++ GK V SV G+ SYVK+IACGGRHSAV+TD
Sbjct: 270 SRVRLVSSPHPIPCIEPSSYGKATSSGVNMSSVVQCGRVLGSYVKKIACGGRHSAVITD 328
Score = 64 (27.6 bits), Expect = 1.1e-80, Sum P(2) = 1.1e-80
Identities = 11/16 (68%), Positives = 14/16 (87%)
Query: 291 VKEIACGGRHSAVVTD 306
VK I+CG RH+AV+TD
Sbjct: 419 VKTISCGARHTAVITD 434
>TAIR|locus:2146142 [details] [associations]
symbol:AT5G16040 "AT5G16040" species:3702 "Arabidopsis
thaliana" [GO:0003682 "chromatin binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008536 "Ran GTPase binding" evidence=ISS]
INTERPRO:IPR000408 Pfam:PF00415 EMBL:CP002688 EMBL:AL391145
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 UniGene:At.19750
UniGene:At.49027 EMBL:BT028960 IPI:IPI00525887 PIR:T51387
RefSeq:NP_197108.1 HSSP:O87916 ProteinModelPortal:Q9LFS0 SMR:Q9LFS0
PRIDE:Q9LFS0 EnsemblPlants:AT5G16040.1 GeneID:831461
KEGG:ath:AT5G16040 TAIR:At5g16040 InParanoid:Q9LFS0 OMA:TTGHPME
PhylomeDB:Q9LFS0 ProtClustDB:CLSN2686124 Genevestigator:Q9LFS0
Uniprot:Q9LFS0
Length = 396
Score = 112 (44.5 bits), Expect = 3.4e-07, Sum P(3) = 3.4e-07
Identities = 35/124 (28%), Positives = 50/124 (40%)
Query: 58 GGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
GG +LA + GKL TWG + K TP +V+AA G HC+
Sbjct: 45 GGSRNSLAICDDGKLFTWGWNQRGTLGHPPETKTESTPSLVKSLANVKIVQAAIGGWHCL 104
Query: 118 SVTEAGEVYTWGWRECVPSAKVTRDFGSAGSF-QKDSTGKQSALPTEQAPPSDKRAGEEV 176
+V + G Y WG E +G G KD TG+ P + KR +++
Sbjct: 105 AVDDQGRAYAWGGNE----------YGQCGEEPSKDETGR----PVRRDIVIPKRCAQQL 150
Query: 177 VKRR 180
R+
Sbjct: 151 TVRQ 154
Score = 108 (43.1 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 36/114 (31%), Positives = 56/114 (49%)
Query: 22 VYMWG--YLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSAD 79
V+ WG + PG + S +P R+ G ++ + + G LA E G L WG+ +
Sbjct: 171 VWTWGQPWPPGDIKQIS-----VPVRVQGLENVRLIAVGAF-HNLALKEDGTLWAWGN-N 223
Query: 80 DEGQSYLTSGKHGETPEPFPLPTEA----SVVKAAAGWAHCVSVTEAGEVYTWG 129
+ GQ L +G P +P+P + ++V AAG H ++T GEVY WG
Sbjct: 224 EYGQ--LGTGD--TQPRSYPIPVQGLDDLTLVDIAAGGWHSTALTNEGEVYGWG 273
Score = 98 (39.6 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 35/147 (23%), Positives = 62/147 (42%)
Query: 25 WGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQS 84
+G L GT + P PIP + + D+ GG T+E G++ WG +
Sbjct: 225 YGQL-GTG-DTQPRSYPIPVQGLDDLTLVDIAAGGWHSTALTNE-GEVYGWGRGEHGRLG 281
Query: 85 YLTSGKHGET-PEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDF 143
+ + K + P+ L +++ + G H V++T G ++++G D
Sbjct: 282 FGDNDKSSKMLPQKVNLLAGEDIIQVSCGGTHSVALTRDGRIFSFG----------RGDH 331
Query: 144 GSAGSFQKDSTGKQSALPTEQAPPSDK 170
G G +K +TG+ LP PP +
Sbjct: 332 GRLGYGRKVTTGQPLELPIHIPPPEGR 358
Score = 77 (32.2 bits), Expect = 0.00096, Sum P(3) = 0.00096
Identities = 16/61 (26%), Positives = 30/61 (49%)
Query: 72 LITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWR 131
+I WGS +D GQ L + + E +V G + +++ + G+++TWGW
Sbjct: 7 VIAWGSGED-GQLGLGTDEEKELASVVDALEPFNVRSVVGGSRNSLAICDDGKLFTWGWN 65
Query: 132 E 132
+
Sbjct: 66 Q 66
Score = 61 (26.5 bits), Expect = 3.4e-07, Sum P(3) = 3.4e-07
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 287 GRSYVKEIACGGRHSAVVTDMSY 309
G+ K +ACGGRH+ + + Y
Sbjct: 368 GKWIAKHVACGGRHTLAIVEWKY 390
Score = 51 (23.0 bits), Expect = 0.00096, Sum P(3) = 0.00096
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 202 SPCLVTLNPGVKITKVAAGGRHTLILSD 229
+P LV VKI + A GG H L + D
Sbjct: 81 TPSLVKSLANVKIVQAAIGGWHCLAVDD 108
Score = 47 (21.6 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 286 AGRSYVKEIACGGRHSAVVT 305
AG + +++CGG HS +T
Sbjct: 300 AGEDII-QVSCGGTHSVALT 318
Score = 45 (20.9 bits), Expect = 3.4e-07, Sum P(3) = 3.4e-07
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 196 DEFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
D+ + P V L G I +V+ GG H++ L+
Sbjct: 286 DKSSKMLPQKVNLLAGEDIIQVSCGGTHSVALT 318
Score = 44 (20.5 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 211 GVKITK-VAAGGRHTLIL 227
G I K VA GGRHTL +
Sbjct: 368 GKWIAKHVACGGRHTLAI 385
>TAIR|locus:2076889 [details] [associations]
symbol:AT3G02510 "AT3G02510" species:3702 "Arabidopsis
thaliana" [GO:0003682 "chromatin binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005886 "plasma membrane"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0008536 "Ran GTPase binding" evidence=ISS] INTERPRO:IPR000408
Pfam:PF00415 EMBL:CP002686 GenomeReviews:BA000014_GR
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 UniGene:At.20016
UniGene:At.41128 EMBL:AK227929 IPI:IPI00539921 RefSeq:NP_186900.3
UniGene:At.70614 ProteinModelPortal:Q0WSJ9 SMR:Q0WSJ9 PRIDE:Q0WSJ9
EnsemblPlants:AT3G02510.1 GeneID:821100 KEGG:ath:AT3G02510
TAIR:At3g02510 OMA:NGGVQCW PhylomeDB:Q0WSJ9 Genevestigator:Q2V3Z2
Uniprot:Q0WSJ9
Length = 393
Score = 120 (47.3 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 36/112 (32%), Positives = 58/112 (51%)
Query: 22 VYMWG--YLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSAD 79
V+ WG + PG + S +P R+ G ++ + + G LA E G+L+ WG+ +
Sbjct: 171 VWTWGQPWPPGDIKQIS-----VPVRVQGLENVRLIAVGAF-HNLALEEDGRLLAWGN-N 223
Query: 80 DEGQSYLTSGKHGETPEPFPLP--TEASVVKAAAGWAHCVSVTEAGEVYTWG 129
+ GQ L +G T P P+ + ++V AAG H ++T+ GEVY WG
Sbjct: 224 EYGQ--LGTGDTQPTSHPVPVQGLDDLTLVDIAAGGWHSTALTDKGEVYGWG 273
Score = 104 (41.7 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 34/144 (23%), Positives = 63/144 (43%)
Query: 25 WGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQS 84
+G L GT + P P+P + + D+ GG + A ++ G++ WG +
Sbjct: 225 YGQL-GTG-DTQPTSHPVPVQGLDDLTLVDIAAGGW-HSTALTDKGEVYGWGRGEHGRLG 281
Query: 85 YLTSGKHGE-TPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDF 143
+ K + P+ L E +++ + G H V++T G ++++G D
Sbjct: 282 LGDNDKSSKMVPQKVNLLAEEDIIQVSCGGTHSVALTRDGRIFSFG----------RGDH 331
Query: 144 GSAGSFQKDSTGKQSALPTEQAPP 167
G G +K +TG+ LP + PP
Sbjct: 332 GRLGYGRKVTTGQPLELPIKIPPP 355
Score = 60 (26.2 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 277 QGSVNSSGKA--GRSYVKEIACGGRHSAVVTD 306
+GS N + + G+ K IACGGRH+ + +
Sbjct: 356 EGSFNHTDEEEEGKWSAKSIACGGRHTLAIVE 387
Score = 44 (20.5 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 293 EIACGGRHSAVVT 305
+++CGG HS +T
Sbjct: 306 QVSCGGTHSVALT 318
Score = 42 (19.8 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 217 VAAGGRHTLIL 227
+A GGRHTL +
Sbjct: 375 IACGGRHTLAI 385
>UNIPROTKB|E1B8U7 [details] [associations]
symbol:RCCD1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] INTERPRO:IPR000408 Pfam:PF00415
GO:GO:0005886 GO:GO:0005737 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012
OMA:ERPGAWF GeneTree:ENSGT00700000104312 EMBL:DAAA02052163
IPI:IPI00710464 UniGene:Bt.111664 Ensembl:ENSBTAT00000024803
NextBio:20875558 Uniprot:E1B8U7
Length = 377
Score = 123 (48.4 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 38/120 (31%), Positives = 53/120 (44%)
Query: 59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKA---AAGWAH 115
G AL +G++ +WG A GQ L G PEP L + A A GW H
Sbjct: 167 GAEHALLLDAAGQVFSWG-AGRHGQ--LGHGTLEAEPEPRLLEALQGLRMAEVAAGGW-H 222
Query: 116 CVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEE 175
V ++E G++Y WGW E A T+ G K + G+ S L + + AGE+
Sbjct: 223 SVCLSETGDIYIWGWNESGQLALPTKSLAEDG---KTTAGEASGLEEDGSEVKRGSAGED 279
Score = 50 (22.7 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 287 GRSYVKEIACGGRHSAVVT 305
G VK ++CG RH+AV+T
Sbjct: 300 GSEAVK-VSCGSRHTAVLT 317
>UNIPROTKB|E2R5W9 [details] [associations]
symbol:RCCD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] INTERPRO:IPR000408
Pfam:PF00415 GO:GO:0005886 GO:GO:0005737 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 OMA:ERPGAWF GeneTree:ENSGT00700000104312
EMBL:AAEX03002330 EMBL:AAEX03002329 Ensembl:ENSCAFT00000035362
Uniprot:E2R5W9
Length = 313
Score = 118 (46.6 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 32/90 (35%), Positives = 42/90 (46%)
Query: 59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEAS--VVKAAAGWAHC 116
G AL E+G++ +WG GQ L G PEP L V + AAG H
Sbjct: 103 GAEHALLLDEAGQVFSWGQGR-HGQ--LGHGSLEAEPEPRLLEALQGLPVAEVAAGGWHS 159
Query: 117 VSVTEAGEVYTWGWRE----CVPSAKVTRD 142
V V+E G++Y WGW E +PS + D
Sbjct: 160 VCVSETGDIYIWGWNESGQLALPSRSLAED 189
Score = 50 (22.7 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 287 GRSYVKEIACGGRHSAVVT 305
G VK +CG RH+AVVT
Sbjct: 236 GADVVKA-SCGSRHTAVVT 253
>UNIPROTKB|O95199 [details] [associations]
symbol:RCBTB2 "RCC1 and BTB domain-containing protein 2"
species:9606 "Homo sapiens" [GO:0005087 "Ran guanyl-nucleotide
exchange factor activity" evidence=TAS] InterPro:IPR000210
InterPro:IPR013069 Pfam:PF00651 PROSITE:PS50097 SMART:SM00225
INTERPRO:IPR000408 Pfam:PF00415 EMBL:CH471075 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0005087 PRINTS:PR00633
PROSITE:PS00625 PROSITE:PS00626 PROSITE:PS50012 eggNOG:COG5184
HOVERGEN:HBG053261 KO:K11494 EMBL:AF060219 EMBL:AY341245
EMBL:AK315703 EMBL:AL157813 EMBL:BC029052 IPI:IPI00658195
IPI:IPI00941277 PIR:T50663 RefSeq:NP_001259.1 UniGene:Hs.652712
ProteinModelPortal:O95199 SMR:O95199 IntAct:O95199
MINT:MINT-1481780 STRING:O95199 PhosphoSite:O95199 PRIDE:O95199
DNASU:1102 Ensembl:ENST00000344532 GeneID:1102 KEGG:hsa:1102
UCSC:uc001vch.3 CTD:1102 GeneCards:GC13M049063 HGNC:HGNC:1914
HPA:HPA040242 MIM:603524 neXtProt:NX_O95199 PharmGKB:PA26450
InParanoid:O95199 OrthoDB:EOG4M91R6 PhylomeDB:O95199 ChiTaRS:RCBTB2
GenomeRNAi:1102 NextBio:4558 ArrayExpress:O95199 Bgee:O95199
CleanEx:HS_RCBTB2 Genevestigator:O95199 GermOnline:ENSG00000136161
Uniprot:O95199
Length = 551
Score = 131 (51.2 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 36/113 (31%), Positives = 51/113 (45%)
Query: 22 VYMWGYL-PGTSPEKSPILSPIPARLCGGDSWKDVCGGGCG--FALATSESGKLITWGSA 78
V+ WGY G S + PIP R+ G K V CG +A ++G++ WG
Sbjct: 173 VFAWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGY- 231
Query: 79 DDEGQSYLTSGKHGETPEPFPLPTEAS--VVKAAAGWAHCVSVTEAGEVYTWG 129
G L G G P P + V + A G+AH + +T+ G+VY WG
Sbjct: 232 --NGNGQLGLGNSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWG 282
Score = 92 (37.4 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 28/94 (29%), Positives = 42/94 (44%)
Query: 42 IPARLCGGDSWKDVCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFP 99
+P + S K V CG +L + G++ WG ++ GQ + SG P P
Sbjct: 141 VPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVFAWGY-NNSGQ--VGSGSTVNQPIPRR 197
Query: 100 LP---TEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
+ VV A G C++V + GEVY WG+
Sbjct: 198 VTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGY 231
Score = 70 (29.7 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 202 SPCLVTLNPGVKITKVAAGGRHTLILSD 229
+PC V G+++ +VA G HTL+L+D
Sbjct: 247 TPCRVAALQGIRVQRVACGYAHTLVLTD 274
>TAIR|locus:2163986 [details] [associations]
symbol:UVR8 "UVB-RESISTANCE 8" species:3702 "Arabidopsis
thaliana" [GO:0005737 "cytoplasm" evidence=ISM] [GO:0005085
"guanyl-nucleotide exchange factor activity" evidence=ISS]
[GO:0009411 "response to UV" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0010224 "response to UV-B"
evidence=IEP;IGI] [GO:0000785 "chromatin" evidence=IDA] [GO:0009649
"entrainment of circadian clock" evidence=IMP] [GO:0006007 "glucose
catabolic process" evidence=RCA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] INTERPRO:IPR000408
Pfam:PF00415 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009649 GO:GO:0000785 EMBL:AB007646
GO:GO:0003682 Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
GO:GO:0005085 PRINTS:PR00633 PROSITE:PS00625 PROSITE:PS00626
PROSITE:PS50012 GO:GO:0010224 eggNOG:COG5184 UniGene:At.49214
EMBL:AF130441 EMBL:AY125497 EMBL:BT000600 IPI:IPI00521473
PIR:T50662 RefSeq:NP_201191.1 PDB:4D9S PDB:4DNU PDB:4DNV PDB:4DNW
PDBsum:4D9S PDBsum:4DNU PDBsum:4DNV PDBsum:4DNW
ProteinModelPortal:Q9FN03 SMR:Q9FN03 DIP:DIP-59667N STRING:Q9FN03
PRIDE:Q9FN03 EnsemblPlants:AT5G63860.1 GeneID:836506
KEGG:ath:AT5G63860 TAIR:At5g63860 HOGENOM:HOG000240817
InParanoid:Q9FN03 OMA:GTLWCWG PhylomeDB:Q9FN03
ProtClustDB:CLSN2686209 Genevestigator:Q9FN03 Uniprot:Q9FN03
Length = 440
Score = 118 (46.6 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 33/113 (29%), Positives = 50/113 (44%)
Query: 22 VYMWGYLP-GT--SPEKSPILSPIPARLCGGDSWKDV-CGGGCGFALATSESGKLITWGS 77
VY WG+ G S + +P+P + G K + CG LA + G++ +WG
Sbjct: 89 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDS--HCLAVTMEGEVQSWGR 146
Query: 78 ADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
+ GQ L + P+ + AAG H +VTE G++Y WGW
Sbjct: 147 -NQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGW 198
Score = 110 (43.8 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 44/182 (24%), Positives = 75/182 (41%)
Query: 55 VCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEAS------VVK 108
+ G ++A + +WG +D GQ G HG+ E P PT+ S +V
Sbjct: 19 IISAGASHSVALLSGDIVCSWGRGED-GQL----G-HGDA-EDRPSPTQLSALDGHQIVS 71
Query: 109 AAAGWAHCVSVTEAG-EVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPP 167
G H V+ +++G EVY+WGW + ++ S+ F + +Q
Sbjct: 72 VTCGADHTVAYSQSGMEVYSWGWGDF---GRLGHG-NSSDLFTPLPIKALHGIRIKQIAC 127
Query: 168 SDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLIL 227
D ++ S R ++ GD +L P + G++I VAAG HT +
Sbjct: 128 GDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAV 187
Query: 228 SD 229
++
Sbjct: 188 TE 189
Score = 106 (42.4 bits), Expect = 0.00051, Sum P(3) = 0.00051
Identities = 58/206 (28%), Positives = 87/206 (42%)
Query: 41 PIPARLCGGDSWKDVCGGGCG--FALATSESG-KLITWGSADDEGQSYLTSGKHGETPEP 97
P P +L D + + CG +A S+SG ++ +WG D + G HG + +
Sbjct: 56 PSPTQLSALDGHQ-IVSVTCGADHTVAYSQSGMEVYSWGWGD-----FGRLG-HGNSSDL 108
Query: 98 F-PLPTEA----SVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKD 152
F PLP +A + + A G +HC++VT GEV +WG + G + +D
Sbjct: 109 FTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQ-------NGQLGLGDT--ED 159
Query: 153 STGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESE----------NPASGDEFFTLS 202
S Q E AG E T++ E+ + N GD L
Sbjct: 160 SLVPQKIQAFEGIRIKMVAAGAE-----HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLV 214
Query: 203 PCLVTLNPGVKITKVAAGGRHTLILS 228
P VT G K++ VA G RHT+ +S
Sbjct: 215 PERVTSTGGEKMSMVACGWRHTISVS 240
Score = 50 (22.7 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 195 GDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSD 229
G+ SP V K+ +V+ G RHTL +++
Sbjct: 311 GNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTE 345
Score = 45 (20.9 bits), Expect = 2.0e-05, Sum P(3) = 2.0e-05
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 291 VKEIACGGRHSAVVTD 306
V +++CG RH+ VT+
Sbjct: 330 VVQVSCGWRHTLAVTE 345
Score = 43 (20.2 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 291 VKEIACGGRHSAVVTD 306
+K +A G H+A VT+
Sbjct: 174 IKMVAAGAEHTAAVTE 189
Score = 38 (18.4 bits), Expect = 2.0e-05, Sum P(3) = 2.0e-05
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 214 ITKVAAGGRHTLILS 228
I++++ G RHT+ L+
Sbjct: 278 ISQISGGWRHTMALT 292
Score = 37 (18.1 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 289 SYVKEIACGGRHSAVVT 305
S++ +I+ G RH+ +T
Sbjct: 276 SFISQISGGWRHTMALT 292
Score = 37 (18.1 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 287 GRSYVKEIACGGRHSAVVT 305
G + +ACG RH+ V+
Sbjct: 222 GGEKMSMVACGWRHTISVS 240
>MGI|MGI:1917200 [details] [associations]
symbol:Rcbtb2 "regulator of chromosome condensation (RCC1)
and BTB (POZ) domain containing protein 2" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000210 InterPro:IPR013069 Pfam:PF00651
PROSITE:PS50097 SMART:SM00225 MGI:MGI:1917200 INTERPRO:IPR000408
Pfam:PF00415 Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00625 PROSITE:PS00626 PROSITE:PS50012
eggNOG:COG5184 GeneTree:ENSGT00700000104208 HOGENOM:HOG000065752
HOVERGEN:HBG053261 KO:K11494 CTD:1102 OrthoDB:EOG4M91R6
ChiTaRS:RCBTB2 EMBL:AK031242 EMBL:AK031248 EMBL:AK160881
EMBL:BC003224 IPI:IPI00308981 IPI:IPI00661148 RefSeq:NP_001164165.1
RefSeq:NP_598844.3 UniGene:Mm.280068 ProteinModelPortal:Q99LJ7
SMR:Q99LJ7 STRING:Q99LJ7 PhosphoSite:Q99LJ7 PaxDb:Q99LJ7
PRIDE:Q99LJ7 Ensembl:ENSMUST00000022702 Ensembl:ENSMUST00000110952
Ensembl:ENSMUST00000164822 Ensembl:ENSMUST00000169479
Ensembl:ENSMUST00000169513 Ensembl:ENSMUST00000170677 GeneID:105670
KEGG:mmu:105670 UCSC:uc007upj.2 UCSC:uc007upm.2 InParanoid:Q99LJ7
OMA:QMCSMAV NextBio:357822 Bgee:Q99LJ7 Genevestigator:Q99LJ7
GermOnline:ENSMUSG00000022106 Uniprot:Q99LJ7
Length = 551
Score = 129 (50.5 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 35/113 (30%), Positives = 51/113 (45%)
Query: 22 VYMWGYL-PGTSPEKSPILSPIPARLCGGDSWKDVCGGGCG--FALATSESGKLITWGSA 78
V+ WGY G S PIP R+ G K V CG ++A ++G++ WG
Sbjct: 173 VFAWGYNNSGQVGSGSTANQPIPRRVTGCLQNKVVMNIACGQMCSMAVVDTGEVYVWGY- 231
Query: 79 DDEGQSYLTSGKHGETPEPFPLPTEAS--VVKAAAGWAHCVSVTEAGEVYTWG 129
G L G G P P + V + A G+AH + +T+ G++Y WG
Sbjct: 232 --NGNGQLGLGSSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQIYAWG 282
Score = 90 (36.7 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 25/77 (32%), Positives = 37/77 (48%)
Query: 57 GGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEAS---VVKAAAGW 113
G G LAT++ G++ TWG S L +G P + T S V++ A G
Sbjct: 106 GSGPHIVLATTD-GEVFTWGH---NAYSQLGNGTTNHGLVPCHISTNLSNKQVIEVACGS 161
Query: 114 AHCVSVTEAGEVYTWGW 130
H + +T GEV+ WG+
Sbjct: 162 YHSLVLTSDGEVFAWGY 178
Score = 70 (29.7 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 202 SPCLVTLNPGVKITKVAAGGRHTLILSD 229
+PC V G+++ +VA G HTL+L+D
Sbjct: 247 TPCRVAALQGIRVQRVACGYAHTLVLTD 274
>TAIR|locus:2159295 [details] [associations]
symbol:RUG3 "RCC1/UVR8/GEF-like 3" species:3702
"Arabidopsis thaliana" [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008536 "Ran GTPase binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0008380 "RNA splicing"
evidence=IMP] [GO:0032981 "mitochondrial respiratory chain complex
I assembly" evidence=IMP] INTERPRO:IPR000408 Pfam:PF00415
GO:GO:0005739 EMBL:CP002688 GO:GO:0008380 EMBL:AB015472
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0032981
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 UniGene:At.29139
UniGene:At.50545 HSSP:P18754 IPI:IPI00532631 RefSeq:NP_200895.2
ProteinModelPortal:Q9FJG9 SMR:Q9FJG9 PRIDE:Q9FJG9
EnsemblPlants:AT5G60870.1 GeneID:836208 KEGG:ath:AT5G60870
TAIR:At5g60870 HOGENOM:HOG000030010 InParanoid:Q9FJG9 OMA:ISCGLFH
PhylomeDB:Q9FJG9 ProtClustDB:CLSN2681113 Genevestigator:Q9FJG9
Uniprot:Q9FJG9
Length = 445
Score = 97 (39.2 bits), Expect = 7.8e-05, Sum P(3) = 7.8e-05
Identities = 33/100 (33%), Positives = 46/100 (46%)
Query: 34 EKSPILSPIPARLCGGDSWKDVCGGGCG-FALATSESGKLITWGSADDEGQSYLTSGKHG 92
++S L+ P R+ DS G CG F + G L WG D G+ L G+
Sbjct: 83 DQSFSLAQTPGRI-DADSSSFRIGISCGLFHSGLTIDGDLWIWGKGDG-GR--LGFGQEN 138
Query: 93 ET--PEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
P PL E S+ A G H V++T G+V+TWG+
Sbjct: 139 SVFVPNLNPLFEEHSIRCIALGGLHSVALTHQGDVFTWGY 178
Score = 88 (36.0 bits), Expect = 0.00082, Sum P(3) = 0.00082
Identities = 30/118 (25%), Positives = 51/118 (43%)
Query: 22 VYMWGYLP-GTSPEKSPILSPIPARLCGGDSW----KDVCGGGCGFALATSESGKLITWG 76
V+ WGY G K +P R+ DSW + G A A +ESG+L WG
Sbjct: 173 VFTWGYGGFGALGHKVYTRELVPRRV--DDSWDCKISAIATSGTHTA-AITESGELYMWG 229
Query: 77 SADDEGQSYLTSGKHGETPEPFPLPTEAS-----VVKAAAGWAHCVSVTEAGEVYTWG 129
+ +G+ L G+ +P++ V + G +++T+ G+++ WG
Sbjct: 230 REEGDGRLGLGPGRGPNEGGGLSVPSKVKALTVPVASVSCGGFFTMALTKEGQLWNWG 287
Score = 63 (27.2 bits), Expect = 7.8e-05, Sum P(3) = 7.8e-05
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 195 GDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSD 229
GD P V GV+IT++A GG H+L L++
Sbjct: 297 GDNLGGWEPMPVPSLEGVRITQIACGGYHSLALTE 331
Score = 39 (18.8 bits), Expect = 7.8e-05, Sum P(3) = 7.8e-05
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 294 IACGGRHSAVVTD 306
IA GG SA +TD
Sbjct: 371 IASGGSSSAAITD 383
>UNIPROTKB|F1N7C1 [details] [associations]
symbol:HERC6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] Pfam:PF00632 InterPro:IPR000569 PROSITE:PS50237
SMART:SM00119 INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005634
GO:GO:0005737 GO:GO:0016567 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 GO:GO:0004842 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 SUPFAM:SSF56204 GeneTree:ENSGT00660000095216
OMA:HIFAGTY EMBL:DAAA02017014 IPI:IPI00825680 UniGene:Bt.42179
Ensembl:ENSBTAT00000027362 NextBio:20874614 Uniprot:F1N7C1
Length = 1016
Score = 104 (41.7 bits), Expect = 9.5e-05, Sum P(3) = 9.5e-05
Identities = 33/103 (32%), Positives = 50/103 (48%)
Query: 30 GTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSG 89
G PE+ P L + L CG +LA G++ WG+A EGQ L G
Sbjct: 63 GEQPERIPALETLNVALVS-------CGKE--HSLAVCHKGRVFAWGAAS-EGQ--LGIG 110
Query: 90 KHGETPE-PFPLPTEASV--VKAAAGWAHCVSVTEAGEVYTWG 129
+ ET P + T A + ++ A G H V+++E G+V++WG
Sbjct: 111 EFKETTFIPKKIKTLAGIKIIQVACGHYHSVALSEDGQVFSWG 153
Score = 57 (25.1 bits), Expect = 9.5e-05, Sum P(3) = 9.5e-05
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 195 GDEFFT-LSPCLVTLNPGVKITKVAAGGRHTLILS 228
G EF + SP V G+ + +VAAGG H+ LS
Sbjct: 163 GKEFPSQASPQRVRSLEGIPLAQVAAGGHHSFALS 197
Score = 49 (22.3 bits), Expect = 9.5e-05, Sum P(3) = 9.5e-05
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 265 AASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVT 305
A SG + P V++ S G V I+CG +H+AV+T
Sbjct: 214 ALSGNNAP--VQRYKPVSIGALKTLGVVSISCGYKHTAVLT 252
>UNIPROTKB|G3V2I3 [details] [associations]
symbol:RCCD1 "RCC1 domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] INTERPRO:IPR000408
Pfam:PF00415 GO:GO:0005886 GO:GO:0005737 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 EMBL:AC068831 HGNC:HGNC:30457
ProteinModelPortal:G3V2I3 SMR:G3V2I3 Ensembl:ENST00000555155
ArrayExpress:G3V2I3 Bgee:G3V2I3 Uniprot:G3V2I3
Length = 374
Score = 110 (43.8 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 32/92 (34%), Positives = 41/92 (44%)
Query: 59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKA---AAGWAH 115
G AL +G++ +WG GQ L G EP L +V A A GW H
Sbjct: 166 GAEHALLLDAAGQVFSWGGGR-HGQ--LGHGTLEAELEPRLLEALQGLVMAEVAAGGW-H 221
Query: 116 CVSVTEAGEVYTWGWRECVPSAKVTRDFGSAG 147
V V+E G++Y WGW E A TR+ G
Sbjct: 222 SVCVSETGDIYIWGWNESGQLALPTRNLAEDG 253
Score = 49 (22.3 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 287 GRSYVKEIACGGRHSAVVT 305
G VK +CG RH+AVVT
Sbjct: 297 GSDAVKA-SCGSRHTAVVT 314
>UNIPROTKB|A6NED2 [details] [associations]
symbol:RCCD1 "RCC1 domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] INTERPRO:IPR000408
Pfam:PF00415 GO:GO:0005886 GO:GO:0005737 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 EMBL:CH471101 PRINTS:PR00633
PROSITE:PS00625 PROSITE:PS00626 PROSITE:PS50012 EMBL:AC068831
EMBL:BC113826 EMBL:BC140708 EMBL:BC140709 IPI:IPI00399158
RefSeq:NP_001017919.1 RefSeq:NP_291022.2 UniGene:Hs.655895
ProteinModelPortal:A6NED2 SMR:A6NED2 STRING:A6NED2
PhosphoSite:A6NED2 PaxDb:A6NED2 PRIDE:A6NED2
Ensembl:ENST00000394258 Ensembl:ENST00000556618 GeneID:91433
KEGG:hsa:91433 UCSC:uc002bqj.3 CTD:91433 GeneCards:GC15P091498
HGNC:HGNC:30457 HPA:HPA039683 HPA:HPA040776 neXtProt:NX_A6NED2
PharmGKB:PA142671092 eggNOG:NOG305770 HOGENOM:HOG000154085
HOVERGEN:HBG061852 InParanoid:A6NED2 OMA:ERPGAWF OrthoDB:EOG41NTMF
PhylomeDB:A6NED2 GenomeRNAi:91433 NextBio:77244 ArrayExpress:A6NED2
Bgee:A6NED2 CleanEx:HS_RCCD1 Genevestigator:A6NED2 Uniprot:A6NED2
Length = 376
Score = 110 (43.8 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 32/92 (34%), Positives = 41/92 (44%)
Query: 59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKA---AAGWAH 115
G AL +G++ +WG GQ L G EP L +V A A GW H
Sbjct: 166 GAEHALLLDAAGQVFSWGGGR-HGQ--LGHGTLEAELEPRLLEALQGLVMAEVAAGGW-H 221
Query: 116 CVSVTEAGEVYTWGWRECVPSAKVTRDFGSAG 147
V V+E G++Y WGW E A TR+ G
Sbjct: 222 SVCVSETGDIYIWGWNESGQLALPTRNLAEDG 253
Score = 49 (22.3 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 287 GRSYVKEIACGGRHSAVVT 305
G VK +CG RH+AVVT
Sbjct: 299 GSDAVKA-SCGSRHTAVVT 316
>UNIPROTKB|E1BVG2 [details] [associations]
symbol:RCBTB1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000210 InterPro:IPR013069 Pfam:PF00651 PROSITE:PS50097
SMART:SM00225 INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005737
Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012
GeneTree:ENSGT00700000104208 OMA:NCSNCLG EMBL:AADN02005390
IPI:IPI00590638 Ensembl:ENSGALT00000027473 Uniprot:E1BVG2
Length = 531
Score = 100 (40.3 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 30/107 (28%), Positives = 46/107 (42%)
Query: 30 GTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSG 89
GT +S I+ LCG G G L T E G++ WG G S L +G
Sbjct: 55 GTGDSQSTIVPKKLEALCGKKISSLSYGSGPHVLLCT-EDGEVYAWGH---NGYSQLGNG 110
Query: 90 KHGETPEPFPLPTEA---SVVKAAAGWAHCVSVTEAGEVYTWGWREC 133
+ P + T V++ A G H ++++ G++Y WG+ C
Sbjct: 111 ATNQGVTPVQVCTNLLLKKVIEVACGSHHSMALSFDGDLYAWGYNNC 157
Score = 92 (37.4 bits), Expect = 0.00095, Sum P(2) = 0.00095
Identities = 35/116 (30%), Positives = 50/116 (43%)
Query: 22 VYMWGYLPGTSPEKSPILSP--IPARLCGGDSWKDVCGGGCG--FALATSESGKLITWGS 77
VY WG+ G S + + P ++C K V CG ++A S G L WG
Sbjct: 96 VYAWGH-NGYSQLGNGATNQGVTPVQVCTNLLLKKVIEVACGSHHSMALSFDGDLYAWGY 154
Query: 78 ADDEGQSYLTSGKHGETPEPFPLPT---EASVVKAAAGWAHCVSVTEAGEVYTWGW 130
++ GQ + SG P P + + VV A G ++V GEVY WG+
Sbjct: 155 -NNCGQ--VGSGSTANQPTPRRVSNCLQDKMVVGIACGQTSSMAVVNNGEVYGWGY 207
Score = 64 (27.6 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 201 LSPCLVTLNPGVKITKVAAGGRHTLILSD 229
L+PC V GV I ++A G HTL L+D
Sbjct: 222 LTPCRVAALHGVCILQIACGYAHTLALTD 250
>RGD|1309901 [details] [associations]
symbol:Rccd1 "RCC1 domain containing 1" species:10116 "Rattus
norvegicus" [GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0005886
"plasma membrane" evidence=IEA;ISO] RGD:1309901 INTERPRO:IPR000408
Pfam:PF00415 Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 CTD:91433
OrthoDB:EOG41NTMF GeneTree:ENSGT00700000104312 IPI:IPI00391295
RefSeq:XP_218819.5 UniGene:Rn.225183 Ensembl:ENSRNOT00000029471
GeneID:308760 KEGG:rno:308760 UCSC:RGD:1309901 NextBio:659480
Uniprot:D3ZG92
Length = 378
Score = 109 (43.4 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 36/115 (31%), Positives = 51/115 (44%)
Query: 59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKA---AAGWAH 115
G AL E+G++ +WG GQ L G EP L + A A GW H
Sbjct: 169 GAEHALLLCEAGQVFSWGGGR-HGQ--LGHGSLEAELEPRLLEALQGLRMAEVAAGGW-H 224
Query: 116 CVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTG-KQSALPTEQAPPSD 169
V V+E G++Y WGW E A TR + ++++T L E+A +D
Sbjct: 225 SVCVSETGDIYIWGWNESGQLALPTRSGTEKKTVREEATELNDDGLRGEEAALAD 279
Score = 49 (22.3 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 287 GRSYVKEIACGGRHSAVVT 305
G VK +CG RH+AVVT
Sbjct: 301 GSDAVKA-SCGSRHTAVVT 318
>FB|FBgn0031107 [details] [associations]
symbol:HERC2 "HECT and RLD domain containing protein 2
ortholog (H. sapiens)" species:7227 "Drosophila melanogaster"
[GO:0005085 "guanyl-nucleotide exchange factor activity"
evidence=NAS] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IBA;NAS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0020037 "heme binding" evidence=IEA] [GO:0042787 "protein
ubiquitination involved in ubiquitin-dependent protein catabolic
process" evidence=IBA] [GO:0005737 "cytoplasm" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] Pfam:PF00632 InterPro:IPR000569
InterPro:IPR001199 InterPro:IPR009060 InterPro:IPR010606
Pfam:PF00173 Pfam:PF06701 PROSITE:PS50237 PROSITE:PS51416
SMART:SM00119 UniPathway:UPA00143 INTERPRO:IPR000408 Pfam:PF00415
GO:GO:0005634 GO:GO:0005737 GO:GO:0005814 GO:GO:0046872
EMBL:AE014298 GO:GO:0020037 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 InterPro:IPR015940 PROSITE:PS50030
InterPro:IPR008979 SUPFAM:SSF49785 GO:GO:0004842 PRINTS:PR00633
PROSITE:PS00625 PROSITE:PS00626 PROSITE:PS50012 InterPro:IPR004939
PROSITE:PS51284 InterPro:IPR000859 SUPFAM:SSF49854 GO:GO:0042787
SUPFAM:SSF46934 Gene3D:2.30.30.30 InterPro:IPR021097
InterPro:IPR014722 Pfam:PF11515 SUPFAM:SSF56204 eggNOG:COG5021
GeneTree:ENSGT00700000104208 EMBL:AY113293 EMBL:AF189221
RefSeq:NP_608388.2 UniGene:Dm.3302 ProteinModelPortal:Q9VR91
SMR:Q9VR91 IntAct:Q9VR91 STRING:Q9VR91 PaxDb:Q9VR91
EnsemblMetazoa:FBtr0301344 GeneID:33035 KEGG:dme:Dmel_CG11734
UCSC:CG11734-RB CTD:8924 FlyBase:FBgn0031107 InParanoid:Q9VR91
KO:K10595 OMA:QLAFTRD OrthoDB:EOG48GTJ3 PhylomeDB:Q9VR91
GenomeRNAi:33035 NextBio:781623 Bgee:Q9VR91 GermOnline:CG11734
Uniprot:Q9VR91
Length = 4912
Score = 123 (48.4 bits), Expect = 0.00016, Sum P(3) = 0.00016
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 60 CG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
CG F+LA + +G++ TWG D + +H P+P V+ A G HC+
Sbjct: 3238 CGAQFSLALTRAGEVWTWGKGDYYRLGH-GGDQHVRKPQPIGGLRGRRVIHVAVGALHCL 3296
Query: 118 SVTEAGEVYTWG 129
+VT+AG+VY WG
Sbjct: 3297 AVTDAGQVYAWG 3308
Score = 54 (24.1 bits), Expect = 0.00016, Sum P(3) = 0.00016
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 270 DRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVT 305
DRP LV +N G S V +IACG HSA +T
Sbjct: 4177 DRPKLVEH--LN-----GMS-VADIACGSAHSAAIT 4204
Score = 49 (22.3 bits), Expect = 0.00016, Sum P(3) = 0.00016
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 194 SGDEFFTLSPCLVTLNPGVKITKVAAGGRHTL 225
SG+ F P LV V + +VA G H++
Sbjct: 3317 SGNTFVNKKPALVIGLDAVFVNRVACGSSHSI 3348
>UNIPROTKB|F1RMH6 [details] [associations]
symbol:RCCD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] INTERPRO:IPR000408 Pfam:PF00415
GO:GO:0005886 GO:GO:0005737 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012
OMA:ERPGAWF GeneTree:ENSGT00700000104312 EMBL:CT868688
Ensembl:ENSSSCT00000002041 Uniprot:F1RMH6
Length = 382
Score = 114 (45.2 bits), Expect = 0.00053, P = 0.00053
Identities = 33/82 (40%), Positives = 43/82 (52%)
Query: 63 ALATSESGKLITWGSA---DDEGQSY--LTSGKHG-ETP----EPFP----LPTEASVVK 108
A + +E GK IT G A +++G T G+ G TP +PFP LP + VK
Sbjct: 252 ARSLAEDGKTIT-GDAPGLNEDGSEAKRATEGEDGGPTPFIAVQPFPALLDLPLGSDAVK 310
Query: 109 AAAGWAHCVSVTEAGEVYTWGW 130
A+ G H VT GE+YTWGW
Sbjct: 311 ASCGSRHTAVVTRTGELYTWGW 332
Score = 108 (43.1 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 35/121 (28%), Positives = 51/121 (42%)
Query: 59 GCGFALATSESGKLITWGSA--DDEGQSYLTSGKHGETPEPFP-LPTEASVVKAAAGWAH 115
G AL +G++ +WG G L + + E LP A V AA GW H
Sbjct: 172 GAEHALLLDAAGQVFSWGGGRHGQLGHGTLEAEREPRVLEALQGLPM-AEV--AAGGW-H 227
Query: 116 CVSVTEAGEVYTWGWRE----CVPSAKVTRD----FGSAGSFQKDSTGKQSALPTEQAPP 167
V V+E G++Y WGW E +P+ + D G A +D + + A E P
Sbjct: 228 SVCVSETGDIYIWGWNESGQLALPARSLAEDGKTITGDAPGLNEDGSEAKRATEGEDGGP 287
Query: 168 S 168
+
Sbjct: 288 T 288
Score = 49 (22.3 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 287 GRSYVKEIACGGRHSAVVT 305
G VK +CG RH+AVVT
Sbjct: 305 GSDAVKA-SCGSRHTAVVT 322
>TAIR|locus:2156233 [details] [associations]
symbol:RUG2 "RCC1/UVR8/GEF-like 2" species:3702
"Arabidopsis thaliana" [GO:0005794 "Golgi apparatus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] INTERPRO:IPR000408
Pfam:PF00415 EMBL:CP002688 GenomeReviews:BA000015_GR
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 eggNOG:COG5184
HSSP:P18754 EMBL:BT005508 EMBL:AK117526 IPI:IPI00527447
RefSeq:NP_199644.2 UniGene:At.29855 ProteinModelPortal:Q8GYL6
SMR:Q8GYL6 PRIDE:Q8GYL6 EnsemblPlants:AT5G48330.1 GeneID:834886
KEGG:ath:AT5G48330 TAIR:At5g48330 HOGENOM:HOG000238877
InParanoid:Q8GYL6 OMA:SAGHYHS PhylomeDB:Q8GYL6
ProtClustDB:CLSN2680477 ArrayExpress:Q8GYL6 Genevestigator:Q8GYL6
Uniprot:Q8GYL6
Length = 455
Score = 116 (45.9 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 43/167 (25%), Positives = 73/167 (43%)
Query: 65 ATSESGKLITWGSADDEGQSYLTSGK-HGETPEPFPLPTEASVVKAAAGWAHCVSVTEAG 123
A + G L WG + GQ L +G P VVK + GW H +++T G
Sbjct: 152 AIGDDGSLWVWGRSK-RGQLGLGNGIIEARVPSRVENLAAEHVVKVSLGWGHALALTVDG 210
Query: 124 EVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGE---EVVKRR 180
+V+ WG+ V +V G+ G +++ S T+ + AG+ E +++
Sbjct: 211 KVFGWGY---VADGRV----GNVG-LPLEASLLDSI--TDGSMKGHHAAGDLNLEAAEKK 260
Query: 181 KTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLIL 227
+ +E++ P + + PCLV K+ +A G H+LIL
Sbjct: 261 VVEAMSKENDMPIAWE------PCLVEETCNEKVADIACGSDHSLIL 301
Score = 41 (19.5 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 291 VKEIACGGRHSAVV 304
V +IACG HS ++
Sbjct: 288 VADIACGSDHSLIL 301
>TAIR|locus:504956339 [details] [associations]
symbol:RUG1 "AT5G08710" species:3702 "Arabidopsis
thaliana" [GO:0003682 "chromatin binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008536 "Ran GTPase binding"
evidence=ISS] INTERPRO:IPR000408 Pfam:PF00415 EMBL:CP002688
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 eggNOG:COG5184
EMBL:BT005498 EMBL:AK118882 IPI:IPI00533904 RefSeq:NP_680156.2
UniGene:At.45869 ProteinModelPortal:Q8GWF2 SMR:Q8GWF2 PRIDE:Q8GWF2
EnsemblPlants:AT5G08710.1 GeneID:830771 KEGG:ath:AT5G08710
TAIR:At5g08710 HOGENOM:HOG000006005 InParanoid:Q8GWF2 OMA:HSACIDE
PhylomeDB:Q8GWF2 ProtClustDB:CLSN2690903 Genevestigator:Q8GWF2
Uniprot:Q8GWF2
Length = 434
Score = 97 (39.2 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 34/106 (32%), Positives = 48/106 (45%)
Query: 30 GTSPEKSPILSPIPARLCGGDSWKDVCGGGCGF--ALATSESGKLITWGSADDEGQSYLT 87
G S KS + P+ + G D KD+ G+ + A + G+L WG + GQ L
Sbjct: 115 GVSDVKSHAMDPL--EVSGLD--KDILHISAGYYHSAAITVDGELYMWGK-NSSGQ--LG 167
Query: 88 SGKHGETPEPFPLPTEA----SVVKAAAGWAHCVSVTEAGEVYTWG 129
GK P EA ++ A G H V+VT+ GEV +WG
Sbjct: 168 LGKKAARVVRVPTKVEALHGITIQSVALGSEHSVAVTDGGEVLSWG 213
Score = 61 (26.5 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 290 YVKEIACGGRHSAVVT 305
Y +E+ACGG H+ VVT
Sbjct: 300 YAEEVACGGYHTCVVT 315
Score = 56 (24.8 bits), Expect = 0.0010, Sum P(2) = 0.0010
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 263 EHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTD 306
E+ G D V V G S V +++CG +H+A ++D
Sbjct: 327 ENGCLGTDSTY-VSHSPVRVEGPFLESTVSQVSCGWKHTAAISD 369
>UNIPROTKB|F1RW66 [details] [associations]
symbol:HERC3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] Pfam:PF00632
InterPro:IPR000569 PROSITE:PS50237 SMART:SM00119 INTERPRO:IPR000408
Pfam:PF00415 GO:GO:0005737 GO:GO:0016567 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0004842 PRINTS:PR00633
PROSITE:PS00626 PROSITE:PS50012 SUPFAM:SSF56204
GeneTree:ENSGT00660000095216 CTD:8916 KO:K10614 OMA:SPAVDFR
EMBL:FP015981 EMBL:CU915521 RefSeq:XP_003129374.3 UniGene:Ssc.42366
Ensembl:ENSSSCT00000010082 GeneID:100517903 KEGG:ssc:100517903
Uniprot:F1RW66
Length = 1050
Score = 123 (48.4 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 37/171 (21%), Positives = 70/171 (40%)
Query: 60 CG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
CG +LA S+ G+L +WG+ D +T+ + P + ++++ + G HC+
Sbjct: 91 CGESHSLALSDRGQLFSWGAGSDGQLGLMTTEESVAVPRLIQKLNQQTILQVSCGNWHCL 150
Query: 118 SVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVV 177
++ G+ +TWG + + ++F S S Q+ +P Q + +
Sbjct: 151 ALAADGQFFTWG-KNSHGQLGLGKEFPSQASPQR--VRSLEGIPLAQVAAGGAHSFALSL 207
Query: 178 KRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
+ DE SPC V L K+ ++ G HT +L+
Sbjct: 208 SGAVFGWGMNNAGQLGLSDEEDRESPCHVKLLRAQKVVYISCGEEHTAVLT 258
Score = 41 (19.5 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 294 IACGGRHSAVVT 305
I+CG H+AV+T
Sbjct: 247 ISCGEEHTAVLT 258
Score = 38 (18.4 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 289 SYVKEIACGGRHS 301
S V +IACG +H+
Sbjct: 294 SEVTQIACGRQHT 306
>ZFIN|ZDB-GENE-070718-6 [details] [associations]
symbol:herc2 "hect domain and RLD 2" species:7955
"Danio rerio" [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IEA] [GO:0006464 "cellular protein modification
process" evidence=IEA] [GO:0020037 "heme binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] Pfam:PF00632
InterPro:IPR000433 InterPro:IPR000569 InterPro:IPR001199
InterPro:IPR009060 InterPro:IPR010606 Pfam:PF00173 Pfam:PF00569
Pfam:PF06701 PROSITE:PS01357 PROSITE:PS50135 PROSITE:PS50237
PROSITE:PS50255 PROSITE:PS51416 SMART:SM00119 SMART:SM00291
INTERPRO:IPR000408 Pfam:PF00415 ZFIN:ZDB-GENE-070718-6
GO:GO:0046872 GO:GO:0008270 GO:GO:0020037 GO:GO:0005622
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
Gene3D:3.10.120.10 SUPFAM:SSF55856 InterPro:IPR008979
SUPFAM:SSF49785 GO:GO:0004842 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 InterPro:IPR004939 Pfam:PF03256 PROSITE:PS51284
SUPFAM:SSF46934 Gene3D:2.30.30.30 InterPro:IPR021097
InterPro:IPR014722 Pfam:PF11515 SUPFAM:SSF56204
GeneTree:ENSGT00700000104208 InterPro:IPR006624 SMART:SM00706
EMBL:CABZ01006344 EMBL:CABZ01006345 EMBL:CABZ01006346 EMBL:FP085470
IPI:IPI00495163 Ensembl:ENSDART00000110770 Uniprot:E7EYK8
Length = 4832
Score = 121 (47.7 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 55 VCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWA 114
VC G F++A ++ G++ TWG D++ + T +H P+ VV A G
Sbjct: 652 VCCGS-QFSVALTKDGQVYTWGKGDNQRLGHGTD-EHVRYPKLLDSLQGKRVVDIAVGST 709
Query: 115 HCVSVTEAGEVYTWG 129
HC+++TE GEV++WG
Sbjct: 710 HCLALTEEGEVHSWG 724
Score = 53 (23.7 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 203 PCLVTLNPGVKITKVAAGGRHTLILS 228
P LV G KI +VA G HTL S
Sbjct: 4290 PRLVAALQGKKINRVACGSAHTLAWS 4315
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.130 0.401 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 313 283 0.00084 115 3 11 23 0.44 34
33 0.42 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 20
No. of states in DFA: 611 (65 KB)
Total size of DFA: 209 KB (2115 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.88u 0.12s 27.00t Elapsed: 00:00:01
Total cpu time: 26.89u 0.12s 27.01t Elapsed: 00:00:01
Start: Mon May 20 18:43:15 2013 End: Mon May 20 18:43:16 2013