BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021363
(313 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 60 CG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
CG F++A ++SG + TWG D + S H P V+ A G HCV
Sbjct: 272 CGSQFSVALTKSGAVYTWGKGDYHRLGH-GSDDHVRRPRQVQGLQGKKVIAIATGSLHCV 330
Query: 118 SVTEAGEVYTWG 129
TE GEVYTWG
Sbjct: 331 CCTEDGEVYTWG 342
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 64 LATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEA----SVVKAAAGWAHCVSV 119
LA S G++ +WG A+D G +P P E+ VV AAG AH V
Sbjct: 120 LALSSEGEVYSWGEAEDG-----KLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACV 174
Query: 120 TEAGEVYTWG 129
T AG++YTWG
Sbjct: 175 TAAGDLYTWG 184
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 13/116 (11%)
Query: 22 VYMWG---YLPGTSPEKSPILSPIPARLCGGDSWKDV-CGGGCGFALATSESGKLITWGS 77
+Y WG Y + L P G D+ CG G L ++ + +WG
Sbjct: 180 LYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGD 239
Query: 78 ADDEGQSYLTSGKHGETPEPFPLPTEA----SVVKAAAGWAHCVSVTEAGEVYTWG 129
D Y G+ G P+ ++ VVK G V++T++G VYTWG
Sbjct: 240 GD-----YGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWG 290
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 107 VKAAAGWAHCVSVTEAGEVYTWG 129
V +G HC++++ GEVY+WG
Sbjct: 110 VAVNSGGKHCLALSSEGEVYSWG 132
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Query: 22 VYMWGYLPGT---SPEKSPILSPIPARLCGGDSWKDVCGGGCG--FALATSESGKLITWG 76
VY WG+ S + +P+P + G K + CG LA + G++ +WG
Sbjct: 80 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA---CGDSHCLAVTXEGEVQSWG 136
Query: 77 SADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
+ GQ L + P+ + AAG H +VTE G++Y WGW
Sbjct: 137 R-NQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTEDGDLYGWGW 189
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 58 GGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
GG A + GKL WG + GQ + + +P P + VV+ + GW H +
Sbjct: 274 GGARHTXALTSDGKLYGWG-WNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTL 332
Query: 118 SVTEAGEVYTWG 129
+VTE V+ WG
Sbjct: 333 AVTERNNVFAWG 344
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 75/193 (38%), Gaps = 50/193 (25%)
Query: 59 GCGFALATSESG-KLITWGSADDEGQSYLTSGKHGETPEPF-PLPTEA----SVVKAAAG 112
G +A S+SG ++ +WG D HG + + F PLP +A + + A G
Sbjct: 66 GADHTVAYSQSGXEVYSWGWGD------FGRLGHGNSSDLFTPLPIKALHGIRIKQIACG 119
Query: 113 WAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRA 172
+HC++VT GEV +WG ++ G+ TE + K
Sbjct: 120 DSHCLAVTXEGEVQSWG---------------------RNQNGQLGLGDTEDSLVPQKIQ 158
Query: 173 GEEVVKRRKTSSAREESE-----------------NPASGDEFFTLSPCLVTLNPGVKIT 215
E ++ + ++ E + N GD L P VT G K +
Sbjct: 159 AFEGIRIKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXS 218
Query: 216 KVAAGGRHTLILS 228
VA G RHT+ +S
Sbjct: 219 XVACGWRHTISVS 231
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 74/177 (41%), Gaps = 35/177 (19%)
Query: 69 SGKLI-TWGSADDEGQSYLTSGKHGETPEPFPLPTEAS------VVKAAAGWAHCVSVTE 121
SG ++ +WG +D GQ HG+ E P PT+ S +V G H V+ ++
Sbjct: 23 SGDIVCSWGRGED-GQL-----GHGDA-EDRPSPTQLSALDGHQIVSVTCGADHTVAYSQ 75
Query: 122 AG-EVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTE--------QAPPSDKRA 172
+G EVY+WGW DFG G +S+ + LP + Q D
Sbjct: 76 SGXEVYSWGWG----------DFGRLG--HGNSSDLFTPLPIKALHGIRIKQIACGDSHC 123
Query: 173 GEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSD 229
+ S R ++ GD +L P + G++I VAAG HT +++
Sbjct: 124 LAVTXEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTE 180
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 61/175 (34%), Gaps = 25/175 (14%)
Query: 65 ATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGE 124
A +E G L WG G L PE A GW H +SV+ +G
Sbjct: 177 AVTEDGDLYGWGWGR-YGNLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGA 235
Query: 125 VYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSS 184
+YT+GW + +G G + +P + S+ + R T +
Sbjct: 236 LYTYGWSK----------YGQLGHGDLED----HLIPHKLEALSNSFISQISGGARHTXA 281
Query: 185 AREESE----------NPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSD 229
+ + G+ SP V K+ +V+ G RHTL +++
Sbjct: 282 LTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTE 336
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 60 CGF--ALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
CG+ ++ S SG L T+G + GQ + P + + + + + G H
Sbjct: 222 CGWRHTISVSYSGALYTYGWSK-YGQLGHGDLEDHLIPHKLEALSNSFISQISGGARHTX 280
Query: 118 SVTEAGEVYTWGWRE 132
++T G++Y WGW +
Sbjct: 281 ALTSDGKLYGWGWNK 295
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Query: 22 VYMWGYLPGT---SPEKSPILSPIPARLCGGDSWKDVCGGGCG--FALATSESGKLITWG 76
VY WG+ S + +P+P + G K + CG LA + G++ +WG
Sbjct: 78 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA---CGDSHCLAVTMEGEVQSWG 134
Query: 77 SADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
+ GQ L + P+ + AAG H +VTE G++Y WGW
Sbjct: 135 R-NQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGW 187
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 58 GGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
GG +A + GKL WG + GQ + + +P P + VV+ + GW H +
Sbjct: 272 GGFRHTMALTSDGKLYGWG-WNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTL 330
Query: 118 SVTEAGEVYTWG 129
+VTE V+ WG
Sbjct: 331 AVTERNNVFAWG 342
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 76/193 (39%), Gaps = 50/193 (25%)
Query: 59 GCGFALATSESG-KLITWGSADDEGQSYLTSGKHGETPEPF-PLPTEA----SVVKAAAG 112
G +A S+SG ++ +WG D HG + + F PLP +A + + A G
Sbjct: 64 GADHTVAYSQSGMEVYSWGWGD------FGRLGHGNSSDLFTPLPIKALHGIRIKQIACG 117
Query: 113 WAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRA 172
+HC++VT GEV +WG ++ G+ TE + K
Sbjct: 118 DSHCLAVTMEGEVQSWG---------------------RNQNGQLGLGDTEDSLVPQKIQ 156
Query: 173 GEEVVKRRKTSSAREESE-----------------NPASGDEFFTLSPCLVTLNPGVKIT 215
E ++ + ++ E + N GD L P VT G K++
Sbjct: 157 AFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMS 216
Query: 216 KVAAGGRHTLILS 228
VA G RHT+ +S
Sbjct: 217 MVACGWRHTISVS 229
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 35/177 (19%)
Query: 69 SGKLI-TWGSADDEGQSYLTSGKHGETPEPFPLPTEAS------VVKAAAGWAHCVSVTE 121
SG ++ +WG +D GQ HG+ E P PT+ S +V G H V+ ++
Sbjct: 21 SGDIVCSWGRGED-GQL-----GHGDA-EDRPSPTQLSALDGHQIVSVTCGADHTVAYSQ 73
Query: 122 AG-EVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTE--------QAPPSDKRA 172
+G EVY+WGW DFG G +S+ + LP + Q D
Sbjct: 74 SGMEVYSWGWG----------DFGRLG--HGNSSDLFTPLPIKALHGIRIKQIACGDSHC 121
Query: 173 GEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSD 229
++ S R ++ GD +L P + G++I VAAG HT +++
Sbjct: 122 LAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTE 178
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 65 ATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGE 124
A +E G L WG G L PE + A GW H +SV+ +G
Sbjct: 175 AVTEDGDLYGWGWGR-YGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGA 233
Query: 125 VYTWGW 130
+YT+GW
Sbjct: 234 LYTYGW 239
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 60 CGF--ALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
CG+ ++ S SG L T+G + GQ + P + + + + + G+ H +
Sbjct: 220 CGWRHTISVSYSGALYTYGWSK-YGQLGHGDLEDHLIPHKLEALSNSFISQISGGFRHTM 278
Query: 118 SVTEAGEVYTWGWRE 132
++T G++Y WGW +
Sbjct: 279 ALTSDGKLYGWGWNK 293
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Query: 22 VYMWGYLPGT---SPEKSPILSPIPARLCGGDSWKDVCGGGCG--FALATSESGKLITWG 76
VY WG+ S + +P+P + G K + CG LA + G++ +WG
Sbjct: 78 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA---CGDSHCLAVTMEGEVQSWG 134
Query: 77 SADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
+ GQ L + P+ + AAG H +VTE G++Y WGW
Sbjct: 135 R-NQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGW 187
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 58 GGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
GG +A + GKL WG + GQ + + +P P + VV+ + GW H +
Sbjct: 272 GGWRHTMALTSDGKLYGWG-WNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTL 330
Query: 118 SVTEAGEVYTWG 129
+VTE V+ WG
Sbjct: 331 AVTERNNVFAWG 342
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 76/193 (39%), Gaps = 50/193 (25%)
Query: 59 GCGFALATSESG-KLITWGSADDEGQSYLTSGKHGETPEPF-PLPTEA----SVVKAAAG 112
G +A S+SG ++ +WG D HG + + F PLP +A + + A G
Sbjct: 64 GADHTVAYSQSGMEVYSWGWGD------FGRLGHGNSSDLFTPLPIKALHGIRIKQIACG 117
Query: 113 WAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRA 172
+HC++VT GEV +WG ++ G+ TE + K
Sbjct: 118 DSHCLAVTMEGEVQSWG---------------------RNQNGQLGLGDTEDSLVPQKIQ 156
Query: 173 GEEVVKRRKTSSAREESE-----------------NPASGDEFFTLSPCLVTLNPGVKIT 215
E ++ + ++ E + N GD L P VT G K++
Sbjct: 157 AFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMS 216
Query: 216 KVAAGGRHTLILS 228
VA G RHT+ +S
Sbjct: 217 MVACGWRHTISVS 229
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 35/177 (19%)
Query: 69 SGKLI-TWGSADDEGQSYLTSGKHGETPEPFPLPTEAS------VVKAAAGWAHCVSVTE 121
SG ++ +WG +D GQ HG+ E P PT+ S +V G H V+ ++
Sbjct: 21 SGDIVCSWGRGED-GQL-----GHGDA-EDRPSPTQLSALDGHQIVSVTCGADHTVAYSQ 73
Query: 122 AG-EVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTE--------QAPPSDKRA 172
+G EVY+WGW DFG G +S+ + LP + Q D
Sbjct: 74 SGMEVYSWGWG----------DFGRLG--HGNSSDLFTPLPIKALHGIRIKQIACGDSHC 121
Query: 173 GEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSD 229
++ S R ++ GD +L P + G++I VAAG HT +++
Sbjct: 122 LAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTE 178
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 60 CGF--ALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
CG+ ++ S SG L T+G + GQ + P + + + + + GW H +
Sbjct: 220 CGWRHTISVSYSGALYTYGWSK-YGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTM 278
Query: 118 SVTEAGEVYTWGWRE 132
++T G++Y WGW +
Sbjct: 279 ALTSDGKLYGWGWNK 293
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 65 ATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGE 124
A +E G L WG G L PE + A GW H +SV+ +G
Sbjct: 175 AVTEDGDLYGWGWGR-YGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGA 233
Query: 125 VYTWGW 130
+YT+GW
Sbjct: 234 LYTYGW 239
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Query: 22 VYMWGYLPGT---SPEKSPILSPIPARLCGGDSWKDVCGGGCG--FALATSESGKLITWG 76
VY WG+ S + +P+P + G K + CG LA + G++ +WG
Sbjct: 90 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA---CGDSHCLAVTMEGEVQSWG 146
Query: 77 SADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
+ GQ L + P+ + AAG H +VTE G++Y WGW
Sbjct: 147 R-NQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGW 199
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 58 GGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
GG +A + GKL WG + GQ + + +P P + VV+ + GW H +
Sbjct: 284 GGWRHTMALTSDGKLYGWG-WNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTL 342
Query: 118 SVTEAGEVYTWG 129
+VTE V+ WG
Sbjct: 343 AVTERNNVFAWG 354
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 76/193 (39%), Gaps = 50/193 (25%)
Query: 59 GCGFALATSESG-KLITWGSADDEGQSYLTSGKHGETPEPF-PLPTEA----SVVKAAAG 112
G +A S+SG ++ +WG D HG + + F PLP +A + + A G
Sbjct: 76 GADHTVAYSQSGMEVYSWGWGD------FGRLGHGNSSDLFTPLPIKALHGIRIKQIACG 129
Query: 113 WAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRA 172
+HC++VT GEV +WG ++ G+ TE + K
Sbjct: 130 DSHCLAVTMEGEVQSWG---------------------RNQNGQLGLGDTEDSLVPQKIQ 168
Query: 173 GEEVVKRRKTSSAREESE-----------------NPASGDEFFTLSPCLVTLNPGVKIT 215
E ++ + ++ E + N GD L P VT G K++
Sbjct: 169 AFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMS 228
Query: 216 KVAAGGRHTLILS 228
VA G RHT+ +S
Sbjct: 229 MVACGWRHTISVS 241
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 35/177 (19%)
Query: 69 SGKLI-TWGSADDEGQSYLTSGKHGETPEPFPLPTEAS------VVKAAAGWAHCVSVTE 121
SG ++ +WG +D GQ HG+ E P PT+ S +V G H V+ ++
Sbjct: 33 SGDIVCSWGRGED-GQL-----GHGDA-EDRPSPTQLSALDGHQIVSVTCGADHTVAYSQ 85
Query: 122 AG-EVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTE--------QAPPSDKRA 172
+G EVY+WGW DFG G +S+ + LP + Q D
Sbjct: 86 SGMEVYSWGWG----------DFGRLG--HGNSSDLFTPLPIKALHGIRIKQIACGDSHC 133
Query: 173 GEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSD 229
++ S R ++ GD +L P + G++I VAAG HT +++
Sbjct: 134 LAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTE 190
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 60 CGF--ALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
CG+ ++ S SG L T+G + GQ + P + + + + + GW H +
Sbjct: 232 CGWRHTISVSYSGALYTYGWSK-YGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTM 290
Query: 118 SVTEAGEVYTWGWRE 132
++T G++Y WGW +
Sbjct: 291 ALTSDGKLYGWGWNK 305
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 65 ATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGE 124
A +E G L WG G L PE + A GW H +SV+ +G
Sbjct: 187 AVTEDGDLYGWGWGR-YGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGA 245
Query: 125 VYTWGW 130
+YT+GW
Sbjct: 246 LYTYGW 251
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%)
Query: 65 ATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGE 124
A ++ G++ WGS D ++ P + + VVK A+G H V +T G+
Sbjct: 125 ALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGD 184
Query: 125 VYTWGWRECVPSAKVTRDFGSAGSFQ 150
+YT G E +V F + G Q
Sbjct: 185 LYTLGCGEQGQLGRVPELFANRGGRQ 210
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 35 KSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGET 94
K P L IP + ++ G + S+SG++ ++G +DEG + G
Sbjct: 50 KKPALVSIPEDVVQAEA-------GGMHTVCLSKSGQVYSFG-CNDEGALGRDTSVEGSE 101
Query: 95 PEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129
P + + VV+ +AG +H ++T+ G V+ WG
Sbjct: 102 MVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWG 136
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 66 TSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEV 125
++E G ++T G D GQ L E +P + VV+A AG H V ++++G+V
Sbjct: 23 STEPGLVLTLGQGD-VGQLGLGENVM-ERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQV 80
Query: 126 YTWGWRECVPSAKVTRDFGSAGS 148
Y++G C + RD GS
Sbjct: 81 YSFG---CNDEGALGRDTSVEGS 100
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%)
Query: 65 ATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGE 124
A ++ G++ WGS D ++ P + + VVK A+G H V +T G+
Sbjct: 114 ALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGD 173
Query: 125 VYTWGWRECVPSAKVTRDFGSAGSFQ 150
+YT G E +V F + G Q
Sbjct: 174 LYTLGCGEQGQLGRVPELFANRGGRQ 199
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 35 KSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGET 94
K P L IP + ++ G + S+SG++ ++G +DEG + G
Sbjct: 39 KKPALVSIPEDVVQAEA-------GGMHTVCLSKSGQVYSFG-CNDEGALGRDTSVEGSE 90
Query: 95 PEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129
P + + VV+ +AG +H ++T+ G V+ WG
Sbjct: 91 MVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWG 125
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 66 TSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEV 125
++E G ++T G D GQ L E +P + VV+A AG H V ++++G+V
Sbjct: 12 STEPGLVLTLGQGD-VGQLGLGENVM-ERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQV 69
Query: 126 YTWGWRECVPSAKVTRDFGSAGS 148
Y++G C + RD GS
Sbjct: 70 YSFG---CNDEGALGRDTSVEGS 89
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 13/82 (15%)
Query: 63 ALATSESGKLITWGSAD--------DEGQSYLTSGKHGETPEPFPLPTEASVV----KAA 110
+L S+ G L + G D D Y HG+ PLPT+ + V A
Sbjct: 325 SLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKA-RAVPLPTKLNNVPKFKSVA 383
Query: 111 AGWAHCVSVTEAGEVYTWGWRE 132
AG H V+V + G Y+WG+ E
Sbjct: 384 AGSHHSVAVAQNGIAYSWGFGE 405
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 65 ATSESGKLITWGSAD-DEGQ--SYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTE 121
A +G++ WG+ +EG Y K +TP P ++ ++V+ A G H + + E
Sbjct: 162 ALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDE 221
Query: 122 AGEVYTWG 129
G V+ WG
Sbjct: 222 EGMVFAWG 229
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 72 LITWGSAD--DEGQSYLTSGKHGETP--EPFPLPTEASVVKAAAGWAHCVSVTEAGEVYT 127
+ WG+ + G L K + P PF EA ++ A G H +++ E V++
Sbjct: 31 IFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWS 90
Query: 128 WGWRECVPSAKVTRDFGSA 146
WG C + RD +A
Sbjct: 91 WG---CNDVGALGRDTSNA 106
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 66/173 (38%), Gaps = 18/173 (10%)
Query: 68 ESGKLITWGS-ADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVY 126
E G++ WGS D G LT G P L A+G H V +T AG+V+
Sbjct: 144 EDGRVFAWGSFRDSHGNMGLTI--DGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVF 201
Query: 127 TWGWRECVPSAKVT-RDFGSAGSFQKDSTGKQSALPTEQAPPSD----------KRAGEE 175
T G E +++ R G K + + L +A P + R +
Sbjct: 202 TVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQT 261
Query: 176 VVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
V + ++ + G E F L+P L I +A G HT+IL+
Sbjct: 262 QVIWATGLNNFKQLAHETKGKE-FALTPIKTELK---DIRHIAGGQHHTVILT 310
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 54 DVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGET-PEPFPLPTEASVVKAAAG 112
D+ GG L ++SG + ++G D+ TS E+ P+ LP +A + +AG
Sbjct: 79 DISAGGM-HNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCI--SAG 135
Query: 113 WAHCVSVTEAGEVYTWG-WRECVPSAKVTRD 142
+H + E G V+ WG +R+ + +T D
Sbjct: 136 DSHSACLLEDGRVFAWGSFRDSHGNMGLTID 166
>pdb|1IDK|A Chain A, Pectin Lyase A
Length = 359
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 105 SVVKAAAGWAHCVSVTEAGEV-YTWGWRECVPSAKVTRDFGSAGSFQKDST 154
+V++ G A V + AGEV T+ R+CV + FGS+G+F +DST
Sbjct: 281 TVLETYEGEAFTVPSSTAGEVCSTYLGRDCVING-----FGSSGTFSEDST 326
>pdb|1IDJ|A Chain A, Pectin Lyase A
pdb|1IDJ|B Chain B, Pectin Lyase A
Length = 359
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 105 SVVKAAAGWAHCVSVTEAGEV-YTWGWRECVPSAKVTRDFGSAGSFQKDST 154
+V++ G A V T AGEV T+ R+CV + FG +G+F +DST
Sbjct: 281 TVLETYEGAAFTVPSTTAGEVCSTYLGRDCVING-----FGCSGTFSEDST 326
>pdb|2ENY|A Chain A, Solution Structure Of The Ig-Like Domain (2735-2825) Of
Human Obscurin
Length = 104
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 141 RDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRR----KTSSAREESENPASG 195
+ GS+ FQ G++ L +A PSD AGE V R K S E P+SG
Sbjct: 48 KTVGSSSRFQATRQGRKYILVVREAAPSD--AGEVVFSVRGLTSKASLIVRERSGPSSG 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,182,538
Number of Sequences: 62578
Number of extensions: 377837
Number of successful extensions: 616
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 543
Number of HSP's gapped (non-prelim): 65
length of query: 313
length of database: 14,973,337
effective HSP length: 99
effective length of query: 214
effective length of database: 8,778,115
effective search space: 1878516610
effective search space used: 1878516610
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)