Query 021363
Match_columns 313
No_of_seqs 135 out of 1475
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 02:23:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021363.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021363hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1427 Uncharacterized conser 100.0 1.2E-35 2.7E-40 255.5 13.5 227 13-284 70-307 (443)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 1.4E-32 3.1E-37 250.6 17.6 220 11-312 114-363 (476)
3 COG5184 ATS1 Alpha-tubulin sup 100.0 1E-31 2.2E-36 245.0 18.8 221 11-312 186-415 (476)
4 KOG1427 Uncharacterized conser 100.0 2.1E-30 4.5E-35 223.3 14.2 213 18-312 18-251 (443)
5 KOG0783 Uncharacterized conser 99.9 1.1E-25 2.3E-30 215.2 11.5 217 15-312 137-358 (1267)
6 KOG1428 Inhibitor of type V ad 99.9 1E-21 2.2E-26 194.6 16.9 228 49-312 568-842 (3738)
7 KOG0783 Uncharacterized conser 99.8 2.4E-20 5.3E-25 178.8 6.9 164 64-284 136-309 (1267)
8 KOG1428 Inhibitor of type V ad 99.8 1.5E-18 3.1E-23 172.6 15.7 105 104-264 767-873 (3738)
9 PF00415 RCC1: Regulator of ch 99.4 7.2E-13 1.6E-17 87.6 4.5 51 230-304 1-51 (51)
10 PF00415 RCC1: Regulator of ch 99.3 1.1E-12 2.3E-17 86.7 2.3 50 69-119 1-51 (51)
11 PF13540 RCC1_2: Regulator of 99.2 1.1E-11 2.5E-16 72.0 4.0 30 214-243 1-30 (30)
12 PF13540 RCC1_2: Regulator of 99.2 1.3E-11 2.9E-16 71.7 4.2 30 106-135 1-30 (30)
13 KOG0941 E3 ubiquitin protein l 99.1 1.5E-12 3.2E-17 126.7 -8.0 131 95-306 5-142 (850)
14 KOG0941 E3 ubiquitin protein l 99.0 6E-12 1.3E-16 122.5 -7.1 141 44-242 8-156 (850)
15 KOG3669 Uncharacterized conser 92.4 6.8 0.00015 38.3 14.9 71 104-236 227-299 (705)
16 KOG3669 Uncharacterized conser 89.6 5 0.00011 39.2 11.1 70 213-313 228-299 (705)
17 smart00706 TECPR Beta propelle 88.3 0.86 1.9E-05 26.8 3.5 25 289-313 8-33 (35)
18 KOG1900 Nuclear pore complex, 85.8 28 0.00061 37.5 14.7 61 13-78 92-157 (1311)
19 KOG0943 Predicted ubiquitin-pr 85.7 0.06 1.3E-06 55.9 -4.2 119 11-135 384-509 (3015)
20 PF11725 AvrE: Pathogenicity f 85.0 18 0.00039 39.9 13.1 30 106-135 560-589 (1774)
21 smart00706 TECPR Beta propelle 76.1 5 0.00011 23.4 3.4 25 104-128 8-33 (35)
22 PF07569 Hira: TUP1-like enhan 74.5 16 0.00035 31.5 7.5 29 49-78 12-40 (219)
23 PF07569 Hira: TUP1-like enhan 70.1 6 0.00013 34.2 3.9 28 103-130 12-39 (219)
24 PF11725 AvrE: Pathogenicity f 70.0 28 0.0006 38.6 9.2 48 213-260 745-793 (1774)
25 KOG1408 WD40 repeat protein [F 68.2 22 0.00047 36.0 7.5 23 289-311 218-244 (1080)
26 TIGR01062 parC_Gneg DNA topois 66.0 1.7E+02 0.0037 30.3 14.6 83 43-129 518-603 (735)
27 TIGR01063 gyrA DNA gyrase, A s 57.0 2.5E+02 0.0055 29.4 16.5 78 49-128 534-617 (800)
28 PF12341 DUF3639: Protein of u 57.0 32 0.0007 19.1 3.8 24 212-235 2-25 (27)
29 KOG0943 Predicted ubiquitin-pr 54.6 21 0.00046 38.3 4.9 80 103-236 373-453 (3015)
30 KOG1274 WD40 repeat protein [G 53.4 2.5E+02 0.0053 29.5 12.0 67 63-133 18-88 (933)
31 KOG4693 Uncharacterized conser 52.7 1.7E+02 0.0036 26.3 9.5 65 60-130 80-147 (392)
32 PRK05560 DNA gyrase subunit A; 52.4 3E+02 0.0065 28.8 16.5 78 49-128 536-619 (805)
33 KOG1034 Transcriptional repres 51.8 38 0.00082 31.0 5.6 69 52-129 310-381 (385)
34 PF06462 Hyd_WA: Propeller; I 49.2 15 0.00033 21.1 1.9 15 299-313 1-15 (32)
35 COG4257 Vgb Streptogramin lyas 45.8 64 0.0014 29.0 6.0 96 13-128 108-205 (353)
36 PF06739 SBBP: Beta-propeller 43.8 29 0.00062 20.8 2.6 18 223-240 16-33 (38)
37 PF13418 Kelch_4: Galactose ox 43.5 22 0.00048 22.1 2.2 18 221-238 3-20 (49)
38 KOG0293 WD40 repeat-containing 42.3 1.4E+02 0.003 28.4 7.8 28 213-240 442-471 (519)
39 TIGR03300 assembly_YfgL outer 40.4 3E+02 0.0064 25.3 12.4 15 222-236 362-376 (377)
40 PF02239 Cytochrom_D1: Cytochr 40.0 2.5E+02 0.0054 26.2 9.5 69 51-133 28-99 (369)
41 KOG0278 Serine/threonine kinas 38.1 2.6E+02 0.0057 24.9 8.4 21 112-132 268-288 (334)
42 PF03785 Peptidase_C25_C: Pept 37.9 44 0.00096 23.9 3.1 22 291-312 18-40 (81)
43 PF00167 FGF: Fibroblast growt 36.8 1.3E+02 0.0028 23.0 6.0 25 106-130 2-26 (122)
44 COG4257 Vgb Streptogramin lyas 36.3 1.5E+02 0.0033 26.8 6.8 100 13-131 66-167 (353)
45 PLN03215 ascorbic acid mannose 36.0 1.4E+02 0.0031 28.0 7.1 32 213-244 161-195 (373)
46 TIGR01063 gyrA DNA gyrase, A s 35.6 5.4E+02 0.012 27.0 14.7 114 11-133 547-670 (800)
47 PRK13979 DNA topoisomerase IV 34.7 6.1E+02 0.013 27.3 19.4 80 48-129 550-637 (957)
48 KOG1034 Transcriptional repres 34.5 1.1E+02 0.0024 28.1 5.8 57 16-77 325-382 (385)
49 KOG2055 WD40 repeat protein [G 32.1 2.1E+02 0.0046 27.5 7.4 51 62-132 358-408 (514)
50 KOG2444 WD40 repeat protein [G 32.0 1.2E+02 0.0026 26.4 5.3 61 59-130 69-131 (238)
51 PF03785 Peptidase_C25_C: Pept 30.5 76 0.0016 22.7 3.3 36 211-246 15-51 (81)
52 PRK05560 DNA gyrase subunit A; 29.8 6.8E+02 0.015 26.3 13.9 111 13-132 551-671 (805)
53 KOG0315 G-protein beta subunit 29.4 4.1E+02 0.0089 23.7 13.2 68 51-130 126-196 (311)
54 TIGR03300 assembly_YfgL outer 28.8 3.1E+02 0.0066 25.2 8.2 56 61-128 321-376 (377)
55 PF13570 PQQ_3: PQQ-like domai 28.7 67 0.0015 19.0 2.5 20 293-312 16-35 (40)
56 PLN03215 ascorbic acid mannose 28.3 2.8E+02 0.0061 26.1 7.6 26 212-237 200-225 (373)
57 KOG0289 mRNA splicing factor [ 28.2 5.5E+02 0.012 24.7 10.4 66 62-130 351-418 (506)
58 KOG0318 WD40 repeat stress pro 28.0 3.5E+02 0.0076 26.6 8.2 58 18-84 79-143 (603)
59 TIGR01062 parC_Gneg DNA topois 25.7 4.5E+02 0.0097 27.3 9.1 120 10-138 536-661 (735)
60 KOG0293 WD40 repeat-containing 23.8 95 0.0021 29.5 3.6 50 17-78 459-513 (519)
61 PF10168 Nup88: Nuclear pore c 23.4 7.7E+02 0.017 25.5 10.3 17 12-28 34-50 (717)
62 PF02239 Cytochrom_D1: Cytochr 23.1 6.2E+02 0.013 23.6 10.5 85 43-128 62-155 (369)
63 PF13854 Kelch_5: Kelch motif 22.9 85 0.0018 18.9 2.2 19 221-240 6-24 (42)
64 KOG0291 WD40-repeat-containing 22.4 8.9E+02 0.019 25.2 14.0 245 9-312 200-451 (893)
65 KOG1274 WD40 repeat protein [G 22.2 7.7E+02 0.017 26.1 9.8 67 62-128 479-549 (933)
66 KOG0646 WD40 repeat protein [G 22.1 7.2E+02 0.016 24.0 13.4 100 13-127 136-243 (476)
67 PF13938 DUF4213: Domain of un 21.5 1.3E+02 0.0029 21.5 3.4 22 210-231 10-31 (87)
68 PLN02772 guanylate kinase 20.7 3.2E+02 0.007 25.9 6.5 21 220-240 76-96 (398)
69 PF01436 NHL: NHL repeat; Int 20.4 1.6E+02 0.0035 16.0 2.8 17 114-130 4-20 (28)
No 1
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=1.2e-35 Score=255.48 Aligned_cols=227 Identities=23% Similarity=0.300 Sum_probs=175.9
Q ss_pred ceeeeeCCcEEEecCC-CCCCCCCCCCceeeE--eeecCCCCceEEeecCCceEEEEeCCCCEEEecCCCCCCCccccCC
Q 021363 13 KMEECKETVVYMWGYL-PGTSPEKSPILSPIP--ARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSG 89 (313)
Q Consensus 13 ~~~l~~~g~vy~wG~n-~G~lg~~~~~~~p~p--v~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~ 89 (313)
-+.++-+|+.|.||.| .||||++.......| |+-+...+|++.++ |.+|+++||++|+||.||.| .+||||+++.
T Consensus 70 ~vli~megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~-GrnHTl~ltdtG~v~afGeN-K~GQlGlgn~ 147 (443)
T KOG1427|consen 70 CVLIDMEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAA-GRNHTLVLTDTGQVLAFGEN-KYGQLGLGNA 147 (443)
T ss_pred EEEEecccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhh-ccCcEEEEecCCcEEEeccc-cccccccccc
Confidence 4677889999999999 899999976554445 44445677888887 99999999999999999999 8999999987
Q ss_pred CCCCCCcccCCCCCCcEEEEeecCceeEEEecCCcEEEecCCCCCCCCcccccCCCCCccccCCCCCCCCCCccCCCCCC
Q 021363 90 KHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSD 169 (313)
Q Consensus 90 ~~~~~p~~i~~~~~~~i~~Is~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 169 (313)
+.....++.+-....+|..|+||.++++.|+..+.+.++|-..|||||..+.+.
T Consensus 148 ~~~v~s~~~~~~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~-------------------------- 201 (443)
T KOG1427|consen 148 KNEVESTPLPCVVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNE-------------------------- 201 (443)
T ss_pred ccccccCCCccccCccceeeccccceEEEeecccceeecCCccccccccCcchh--------------------------
Confidence 665544444444567899999999999999999999999999999999987541
Q ss_pred ccccceeeeceeeeccCCCCCCCCCCCcceeecceeeecCCCCcEEEEeeCCCeEEEEeCCCCEEEEeCCCCcccCCCCC
Q 021363 170 KRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSR 249 (313)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~h~~al~~~G~vy~wG~n~~gqlG~g~~ 249 (313)
...+...+.++- ..++.|..|..+.+..|++++||.+|++|++++++||.||.+.||+||+-.+
T Consensus 202 -----~~~~~~~~~~~~-----------e~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEq 265 (443)
T KOG1427|consen 202 -----FNMKDSSVRLAY-----------EAQPRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQ 265 (443)
T ss_pred -----hccccccceeee-----------ecCCCccccccccceeeEEEeccCcceeeecCCccEEEeccccccccccccc
Confidence 111111111100 1245677788889999999999999999999999999999999999999875
Q ss_pred CCCcccCeeeccccc-------ccCCCCCcceeec-cccccCC
Q 021363 250 IKMVPTPHLIPCLEH-------AASGKDRPLLVRQ-GSVNSSG 284 (313)
Q Consensus 250 ~~~~~~p~~i~~~~~-------~~~g~~~~~~~~~-~~~~~~~ 284 (313)
+....|++|+.|.. +.+|+..+....- |+|.+|+
T Consensus 266 -KDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g 307 (443)
T KOG1427|consen 266 -KDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWG 307 (443)
T ss_pred -hhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEee
Confidence 56677888876654 5566666655433 4544444
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=1.4e-32 Score=250.59 Aligned_cols=220 Identities=25% Similarity=0.388 Sum_probs=166.8
Q ss_pred ccceeeeeCCcEEEecCC-CCCCCCCC---------------C-CceeeEeeecC------CCCceEEeecCCceEEEEe
Q 021363 11 NEKMEECKETVVYMWGYL-PGTSPEKS---------------P-ILSPIPARLCG------GDSWKDVCGGGCGFALATS 67 (313)
Q Consensus 11 ~~~~~l~~~g~vy~wG~n-~G~lg~~~---------------~-~~~p~pv~~~~------~~~i~~i~~~g~~h~~~lt 67 (313)
+-.+.|++||+||+||.| +|+||... . ...-+|.+++. -.++++++| |++++++|+
T Consensus 114 ~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~c-g~e~svil~ 192 (476)
T COG5184 114 NHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLAC-GWEISVILT 192 (476)
T ss_pred ceEEeecCCCCEEEeccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeec-CCceEEEEc
Confidence 446789999999999999 89998776 1 23345555554 347999999 889999999
Q ss_pred CCCCEEEecCCCCCCCccccCCCCCC----CCcccCCCCCCcEEEEeecCceeEEEecCCcEEEecCCCCCCCCcccccC
Q 021363 68 ESGKLITWGSADDEGQSYLTSGKHGE----TPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDF 143 (313)
Q Consensus 68 ~~G~vy~wG~n~~~Gqlg~~~~~~~~----~p~~i~~~~~~~i~~Is~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~ 143 (313)
++|+||+||.+ ..+.++.+..+... .++|+.++ ...|+++++|.+|.++|+.+|+||+||++.+||||+.+-.
T Consensus 193 ~~G~V~~~gt~-r~~e~~~g~~~~s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e- 269 (476)
T COG5184 193 ADGRVYSWGTF-RCGELGQGSYKNSQKTSIQFTPLKVP-KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSE- 269 (476)
T ss_pred cCCcEEEecCc-cccccccccccccccceeeeeeeecC-chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhh-
Confidence 99999999998 57777766333322 35555555 6789999999999999999999999999999999974321
Q ss_pred CCCCccccCCCCCCCCCCccCCCCCCccccceeeeceeeeccCCCCCCCCCCCcceeecceeeecCCCCcEEEEeeCCCe
Q 021363 144 GSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRH 223 (313)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~h 223 (313)
+. ......|.... -..|+.|+||.+|
T Consensus 270 -----------------------------------~~----------------~~~~lv~~~f~---i~~i~~vacG~~h 295 (476)
T COG5184 270 -----------------------------------RL----------------KLVVLVGDPFA---IRNIKYVACGKDH 295 (476)
T ss_pred -----------------------------------hc----------------ccccccCChhh---hhhhhhcccCcce
Confidence 00 00112222211 1248899999999
Q ss_pred EEEEeCCCCEEEEeCCCCcccCCCCCCC---CcccCeeecccccccCCCCCcceeeccccccCCCCCCccEEEEEeCCce
Q 021363 224 TLILSDMGQVWGWGYGGEGQLGLGSRIK---MVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRH 300 (313)
Q Consensus 224 ~~al~~~G~vy~wG~n~~gqlG~g~~~~---~~~~p~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~I~~G~~~ 300 (313)
++||+++|++|+||.|.+||||.+...+ ....|.....+.. ..|..|++|..|
T Consensus 296 ~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~------------------------~~i~~is~ge~H 351 (476)
T COG5184 296 SLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSG------------------------VTICSISAGESH 351 (476)
T ss_pred EEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCC------------------------ceEEEEecCcce
Confidence 9999999999999999999999983211 1222333333333 579999999999
Q ss_pred EEEEecCCceee
Q 021363 301 SAVVTDMSYPIA 312 (313)
Q Consensus 301 s~alt~~G~vya 312 (313)
+++|..+|.|||
T Consensus 352 ~l~L~~~G~l~a 363 (476)
T COG5184 352 SLILRKDGTLYA 363 (476)
T ss_pred EEEEecCceEEE
Confidence 999999999997
No 3
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=1e-31 Score=245.03 Aligned_cols=221 Identities=25% Similarity=0.386 Sum_probs=176.4
Q ss_pred ccceeeeeCCcEEEecCC-CCCCCCC--CC----CceeeEeeecCCCCceEEeecCCceEEEEeCCCCEEEecCCCCCCC
Q 021363 11 NEKMEECKETVVYMWGYL-PGTSPEK--SP----ILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQ 83 (313)
Q Consensus 11 ~~~~~l~~~g~vy~wG~n-~G~lg~~--~~----~~~p~pv~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~Gq 83 (313)
+..++++++|+||+||.. .+-++.. +. ...++|++++ ...|.++++ |..|.++|+++|+||+||+| ..||
T Consensus 186 e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~-~~~i~qla~-G~dh~i~lt~~G~vy~~Gs~-qkgq 262 (476)
T COG5184 186 EISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP-KKAIVQLAA-GADHLIALTNEGKVYGWGSN-QKGQ 262 (476)
T ss_pred ceEEEEccCCcEEEecCccccccccccccccccceeeeeeeecC-chheeeecc-CCceEEEEecCCcEEEecCC-cccc
Confidence 447899999999999997 4333332 22 3557888877 678999998 87899999999999999999 8999
Q ss_pred ccccCCCCCCCCcccCCCC-CCcEEEEeecCceeEEEecCCcEEEecCCCCCCCCcccccCCCCCccccCCCCCCCCCCc
Q 021363 84 SYLTSGKHGETPEPFPLPT-EASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPT 162 (313)
Q Consensus 84 lg~~~~~~~~~p~~i~~~~-~~~i~~Is~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~g~~~~~~~ 162 (313)
||....+...++.++.-+. -..|+.|+||.+|+++|+++|+||+||.|.+||||.. .+
T Consensus 263 lG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~-~~-------------------- 321 (476)
T COG5184 263 LGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAG-SD-------------------- 321 (476)
T ss_pred cCCchhhhcccccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccC-cc--------------------
Confidence 9988766665555553332 2347999999999999999999999999999999952 11
Q ss_pred cCCCCCCccccceeeeceeeeccCCCCCCCCCCCcceeecceeeecCCCCcEEEEeeCCCeEEEEeCCCCEEEEeCCCCc
Q 021363 163 EQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEG 242 (313)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~h~~al~~~G~vy~wG~n~~g 242 (313)
..+-.....|+....+.+..|.+|++|..|+++|..+|.||+||++..+
T Consensus 322 -------------------------------~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~ 370 (476)
T COG5184 322 -------------------------------GEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRG 370 (476)
T ss_pred -------------------------------cccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCccc
Confidence 0111234566666667777899999999999999999999999999999
Q ss_pred ccCCCCCC-CCcccCeeecccccccCCCCCcceeeccccccCCCCCCccEEEEEeCCceEEEEecCCceee
Q 021363 243 QLGLGSRI-KMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDMSYPIA 312 (313)
Q Consensus 243 qlG~g~~~-~~~~~p~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~I~~G~~~s~alt~~G~vya 312 (313)
|||..... ..+.+|.++.... .+.+|+||.-|+++.+.+|+||+
T Consensus 371 qlg~~~~~~~~~~~~~~ls~~~--------------------------~~~~v~~gt~~~~~~t~~gsvy~ 415 (476)
T COG5184 371 QLGIQEEITIDVSTPTKLSVAI--------------------------KLEQVACGTHHNIARTDDGSVYS 415 (476)
T ss_pred cccCcccceeecCCcccccccc--------------------------ceEEEEecCccceeeccCCceEE
Confidence 99998732 3555566555444 48999999999999999999996
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=99.97 E-value=2.1e-30 Score=223.29 Aligned_cols=213 Identities=25% Similarity=0.332 Sum_probs=167.6
Q ss_pred eCCcEEEecCC-CCCCC-----CCCCCceeeEeeecCCCCceEEeecCCc--eEEEEeCCCCEEEecCCCCCCCccccCC
Q 021363 18 KETVVYMWGYL-PGTSP-----EKSPILSPIPARLCGGDSWKDVCGGGCG--FALATSESGKLITWGSADDEGQSYLTSG 89 (313)
Q Consensus 18 ~~g~vy~wG~n-~G~lg-----~~~~~~~p~pv~~~~~~~i~~i~~~g~~--h~~~lt~~G~vy~wG~n~~~Gqlg~~~~ 89 (313)
+-|++..+|.- ..+.| .......|...+-+.+.+|+.|++ |+. |+++|+-+|++|+||.| ..||||+++.
T Consensus 18 ~~g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~Vas-G~~aaH~vli~megk~~~wGRN-ekGQLGhgD~ 95 (443)
T KOG1427|consen 18 KGGEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVAS-GCAAAHCVLIDMEGKCYTWGRN-EKGQLGHGDM 95 (443)
T ss_pred CCccEEEeccchhhhhcccccccccccccceeccccccceEEEEec-ccchhhEEEEecccceeecccC-ccCccCccch
Confidence 45777777775 22221 122446666666666888999988 665 99999999999999999 8999999999
Q ss_pred CCCCCCcccCCCCCCcEEEEeecCceeEEEecCCcEEEecCCCCCCCCcccccCCCCCccccCCCCCCCCCCccCCCCCC
Q 021363 90 KHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSD 169 (313)
Q Consensus 90 ~~~~~p~~i~~~~~~~i~~Is~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 169 (313)
+....|+.|+.+...+|++.+||.+|+++||++|.||+||.|.+||||.....
T Consensus 96 k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~--------------------------- 148 (443)
T KOG1427|consen 96 KQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAK--------------------------- 148 (443)
T ss_pred hhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccc---------------------------
Confidence 99999999999999999999999999999999999999999999999953211
Q ss_pred ccccceeeeceeeeccCCCCCCCCCCCcceeecceeeecCCCCcEEEEeeCCCeEEEEeCCCCEEEEeCCCCcccCCCCC
Q 021363 170 KRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSR 249 (313)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~h~~al~~~G~vy~wG~n~~gqlG~g~~ 249 (313)
+ ....|.++. .....|..|+||..+++.|+..+.+..+|.-.|||||++..
T Consensus 149 --------------------------~--~v~s~~~~~-~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td 199 (443)
T KOG1427|consen 149 --------------------------N--EVESTPLPC-VVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTD 199 (443)
T ss_pred --------------------------c--ccccCCCcc-ccCccceeeccccceEEEeecccceeecCCccccccccCcc
Confidence 0 111111111 23358999999999999999999999999999999999876
Q ss_pred CCCc-------------ccCeeecccccccCCCCCcceeeccccccCCCCCCccEEEEEeCCceEEEEecCCceee
Q 021363 250 IKMV-------------PTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDMSYPIA 312 (313)
Q Consensus 250 ~~~~-------------~~p~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~I~~G~~~s~alt~~G~vya 312 (313)
.+.. .+|..|..+.. ..|++++||.+|++|++++++||-
T Consensus 200 ~~~~~~~~~~~~~~e~~pr~~~i~~~dg------------------------vqiv~~acg~nhtvavd~nkrVys 251 (443)
T KOG1427|consen 200 NEFNMKDSSVRLAYEAQPRPKAIASLDG------------------------VQIVKVACGTNHTVAVDKNKRVYS 251 (443)
T ss_pred hhhccccccceeeeecCCCccccccccc------------------------eeeEEEeccCcceeeecCCccEEE
Confidence 4322 22333333333 789999999999999999999984
No 5
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.93 E-value=1.1e-25 Score=215.15 Aligned_cols=217 Identities=23% Similarity=0.308 Sum_probs=176.1
Q ss_pred eeeeCCcEEEecCC-CCCCCCCCC--CceeeEeeecC--CCCceEEeecCCceEEEEeCCCCEEEecCCCCCCCccccCC
Q 021363 15 EECKETVVYMWGYL-PGTSPEKSP--ILSPIPARLCG--GDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSG 89 (313)
Q Consensus 15 ~l~~~g~vy~wG~n-~G~lg~~~~--~~~p~pv~~~~--~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~ 89 (313)
.++.-..||.||.| +-.||.+.. ...|..|.++. +.-+++|+. +..|++++++.|+||+||.+ .-|.||+++.
T Consensus 137 ~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l-~kfHSvfl~~kgqvY~cGhG-~GGRlG~gde 214 (1267)
T KOG0783|consen 137 VLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQL-SKFHSVFLTEKGQVYVCGHG-AGGRLGFGDE 214 (1267)
T ss_pred ccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHH-hhceeeEecCCCcEEEeccC-CCCccCcCcc
Confidence 34455789999999 778877654 35555555543 566788887 78899999999999999999 7999999988
Q ss_pred CCCCCCcccCCCCCCcEEEEeecCceeEEEecCCcEEEecCCCCCCCCcccccCCCCCccccCCCCCCCCCCccCCCCCC
Q 021363 90 KHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSD 169 (313)
Q Consensus 90 ~~~~~p~~i~~~~~~~i~~Is~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 169 (313)
.....|..|+.+.+.+|.+|+....|+++||++|.||+||.|..+|||..... .
T Consensus 215 q~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~------~-------------------- 268 (1267)
T KOG0783|consen 215 QYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDE------L-------------------- 268 (1267)
T ss_pred cccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCch------h--------------------
Confidence 87888988999999999999999999999999999999999999999953210 0
Q ss_pred ccccceeeeceeeeccCCCCCCCCCCCcceeecceeeecCCCCcEEEEeeCCCeEEEEeCCCCEEEEeCCCCcccCCCCC
Q 021363 170 KRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSR 249 (313)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~h~~al~~~G~vy~wG~n~~gqlG~g~~ 249 (313)
.-+...+..++.++..+ .|+.|++|..|++|.++. -||+||.|. ||||..+.
T Consensus 269 ------------------------~~~~p~qI~a~r~kg~~--~iIgvaAg~~hsVawt~~-~VY~wGlN~-GQlGi~~n 320 (1267)
T KOG0783|consen 269 ------------------------KKDDPIQITARRIKGFK--QIIGVAAGKSHSVAWTDT-DVYSWGLNN-GQLGISDN 320 (1267)
T ss_pred ------------------------hcCchhhhhhHhhcchh--hhhhhhcccceeeeeecc-eEEEecccC-ceecCCCC
Confidence 01122334444555444 899999999999999987 599999997 99999888
Q ss_pred CCCcccCeeecccccccCCCCCcceeeccccccCCCCCCccEEEEEeCCceEEEEecCCceee
Q 021363 250 IKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDMSYPIA 312 (313)
Q Consensus 250 ~~~~~~p~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~I~~G~~~s~alt~~G~vya 312 (313)
...+.+|+.+-.+. ..|+-|+|-...|+.++.++.+||
T Consensus 321 ~~~Vt~Pr~l~~~~-------------------------~~v~~v~a~~~ATVc~~~~~~i~~ 358 (1267)
T KOG0783|consen 321 ISVVTTPRRLAGLL-------------------------SPVIHVVATTRATVCLLQNNSIIA 358 (1267)
T ss_pred Cceeecchhhcccc-------------------------cceEEEEecCccEEEEecCCcEEE
Confidence 88888998664333 358999999999999999999886
No 6
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.88 E-value=1e-21 Score=194.57 Aligned_cols=228 Identities=21% Similarity=0.285 Sum_probs=152.1
Q ss_pred CCCceEEeecCCce-EEEEeCCCCEEEecCCCCCCCccccCCCCCCCCcccCCCCCCcEEEEeecCceeEEEecCCcEEE
Q 021363 49 GDSWKDVCGGGCGF-ALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYT 127 (313)
Q Consensus 49 ~~~i~~i~~~g~~h-~~~lt~~G~vy~wG~n~~~Gqlg~~~~~~~~~p~~i~~~~~~~i~~Is~G~~hs~~lt~~G~vy~ 127 (313)
..+|+++++ ..| --.++++|++|..|... . ........+.-+.+.-|.+++-|..|+++++.+|+||+
T Consensus 568 ~rKIv~v~~--s~~VY~~vSenGkifM~G~~t-m--------~~n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T 636 (3738)
T KOG1428|consen 568 RRKIVHVCA--SGHVYGYVSENGKIFMGGLHT-M--------RVNVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFT 636 (3738)
T ss_pred cceeEEEee--eeEEEEEEccCCeEEeeccee-E--------EecchHHHhhccccceeehhhccccceeEEEeCCeEEE
Confidence 447889875 466 45689999999999862 1 11122334555667789999999999999999999999
Q ss_pred ecCCCCCCCCccccc-CCCCCc----cccCC--CCCCCCCCccC-CCC--------------------------------
Q 021363 128 WGWRECVPSAKVTRD-FGSAGS----FQKDS--TGKQSALPTEQ-APP-------------------------------- 167 (313)
Q Consensus 128 wG~n~~gqlG~~~~~-~~~~~~----~~~~~--~g~~~~~~~~~-~~~-------------------------------- 167 (313)
||-|..+|+|+.-.- ..+... ..+.. +|...+..-.. ++.
T Consensus 637 ~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C 716 (3738)
T KOG1428|consen 637 WGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTC 716 (3738)
T ss_pred EecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccccccccccCCCCCCcccccCCCcccc
Confidence 999999999985321 111111 11110 11111100000 000
Q ss_pred ---CCccccceeeeceeeeccCCCCCCCCCCCcceeecceeee---cCCCCcEEEEeeCCCeEEEEeCCCCEEEEeCCCC
Q 021363 168 ---SDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVT---LNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGE 241 (313)
Q Consensus 168 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~---~~~~~~i~~I~~G~~h~~al~~~G~vy~wG~n~~ 241 (313)
...+...+.+++.+-.-+.+.+.......+.....|..+. .+.+.++.+|+||.+|+++|.+|++||.+|.|.+
T Consensus 717 ~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~H 796 (3738)
T KOG1428|consen 717 LRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCH 796 (3738)
T ss_pred eeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCcEEEecCCcc
Confidence 0111111233333222222222222222333445555543 3457899999999999999999999999999999
Q ss_pred cccCCCCCCCCcccCeeecccccccCCCCCcceeeccccccCCCCCCccEEEEEeCCceEEEEecCCceee
Q 021363 242 GQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDMSYPIA 312 (313)
Q Consensus 242 gqlG~g~~~~~~~~p~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~I~~G~~~s~alt~~G~vya 312 (313)
||||+|+. ....+|+++..+.+ ..+++|++|++|++++.+||.||.
T Consensus 797 GQLG~GDt-~Sk~~Pq~V~~~~~------------------------t~~vQVaAGSNHT~l~~~DGsVFT 842 (3738)
T KOG1428|consen 797 GQLGVGDT-LSKNTPQQVILPSD------------------------TVIVQVAAGSNHTILRANDGSVFT 842 (3738)
T ss_pred cccCcCcc-ccCCCcceEEcCCC------------------------CceEEEecCCCceEEEecCCcEEE
Confidence 99999985 67889999998888 689999999999999999999984
No 7
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.81 E-value=2.4e-20 Score=178.78 Aligned_cols=164 Identities=26% Similarity=0.365 Sum_probs=134.6
Q ss_pred EEEeCCCCEEEecCCCCCCCccccCCCCCCCCcccCCCCC--CcEEEEeecCceeEEEecCCcEEEecCCCCCCCCcccc
Q 021363 64 LATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTE--ASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTR 141 (313)
Q Consensus 64 ~~lt~~G~vy~wG~n~~~Gqlg~~~~~~~~~p~~i~~~~~--~~i~~Is~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~ 141 (313)
++++.-.+||.||.| .+--||+++......|..+.++.. .=+.+|..+..|+++|++.|.||+||-..=|.||
T Consensus 136 ~~~d~pndvy~wG~N-~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG---- 210 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTN-VNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLG---- 210 (1267)
T ss_pred cccCCccceeEeccc-ccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccC----
Confidence 556667999999999 789999999999999999988753 4478899999999999999999999988877676
Q ss_pred cCCCCCccccCCCCCCCCCCccCCCCCCccccceeeeceeeeccCCCCCCCCCCCcceeecceeeecCCCCcEEEEeeCC
Q 021363 142 DFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGG 221 (313)
Q Consensus 142 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~ 221 (313)
.|++...+.|++|+.+.+.+|++|+...
T Consensus 211 ----------------------------------------------------~gdeq~~~iPkrV~gL~gh~~~qisvs~ 238 (1267)
T KOG0783|consen 211 ----------------------------------------------------FGDEQYNFIPKRVPGLIGHKVIQISVSH 238 (1267)
T ss_pred ----------------------------------------------------cCcccccccccccccccccceEEEEeec
Confidence 4677788999999999999999999999
Q ss_pred CeEEEEeCCCCEEEEeCCCCcccCCCCCCCCcccCeeecccc--------cccCCCCCcceeeccccccCC
Q 021363 222 RHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLE--------HAASGKDRPLLVRQGSVNSSG 284 (313)
Q Consensus 222 ~h~~al~~~G~vy~wG~n~~gqlG~g~~~~~~~~p~~i~~~~--------~~~~g~~~~~~~~~~~~~~~~ 284 (313)
.|+++||++|-||+||.|..+|||..+.......|++|.... .+++|.+|++.-++..++.||
T Consensus 239 ~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~~hsVawt~~~VY~wG 309 (1267)
T KOG0783|consen 239 THSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAGKSHSVAWTDTDVYSWG 309 (1267)
T ss_pred ceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhcccceeeeeecceEEEec
Confidence 999999999999999999999999988766777777775332 244444444444444444333
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.79 E-value=1.5e-18 Score=172.62 Aligned_cols=105 Identities=26% Similarity=0.340 Sum_probs=92.3
Q ss_pred CcEEEEeecCceeEEEecCCcEEEecCCCCCCCCcccccCCCCCccccCCCCCCCCCCccCCCCCCccccceeeeceeee
Q 021363 104 ASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTS 183 (313)
Q Consensus 104 ~~i~~Is~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (313)
.++++|+||..|+++|.+|++||++|+|.+||||.
T Consensus 767 vkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~--------------------------------------------- 801 (3738)
T KOG1428|consen 767 VKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGV--------------------------------------------- 801 (3738)
T ss_pred eeEEEEeccCceEEEEecCCcEEEecCCcccccCc---------------------------------------------
Confidence 47999999999999999999999999999999994
Q ss_pred ccCCCCCCCCCCCcceeecceeeecCCCCcEEEEeeCCCeEEEEeCCCCEEEEeCCCCcccCCCCC--CCCcccCeeecc
Q 021363 184 SAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSR--IKMVPTPHLIPC 261 (313)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~h~~al~~~G~vy~wG~n~~gqlG~g~~--~~~~~~p~~i~~ 261 (313)
||......|+.+..+.+..|++|++|.+|++++..||+||.+|.=..|||+.+.. .-....|.+++.
T Consensus 802 -----------GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~e~~~WNA~Pe~v~~ 870 (3738)
T KOG1428|consen 802 -----------GDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPAGEKAGWNAIPEKVSG 870 (3738)
T ss_pred -----------CccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEeccccCccccCccccccccccCCCcCCC
Confidence 6666788899999999999999999999999999999999999999999997653 234556888876
Q ss_pred ccc
Q 021363 262 LEH 264 (313)
Q Consensus 262 ~~~ 264 (313)
+-.
T Consensus 871 ~G~ 873 (3738)
T KOG1428|consen 871 FGP 873 (3738)
T ss_pred CCc
Confidence 543
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.36 E-value=7.2e-13 Score=87.56 Aligned_cols=51 Identities=35% Similarity=0.695 Sum_probs=45.9
Q ss_pred CCCEEEEeCCCCcccCCCCCCCCcccCeeecccccccCCCCCcceeeccccccCCCCCCccEEEEEeCCceEEEE
Q 021363 230 MGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVV 304 (313)
Q Consensus 230 ~G~vy~wG~n~~gqlG~g~~~~~~~~p~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~I~~G~~~s~al 304 (313)
||+||+||.|.+||||..........|++|+.+.. .+|++|+||.+||+||
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~------------------------~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSG------------------------VRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTT------------------------SEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCC------------------------CCEEEEEeCcceEEEC
Confidence 68999999999999994444578899999999888 7899999999999997
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.30 E-value=1.1e-12 Score=86.73 Aligned_cols=50 Identities=28% Similarity=0.508 Sum_probs=46.1
Q ss_pred CCCEEEecCCCCCCCcc-ccCCCCCCCCcccCCCCCCcEEEEeecCceeEEE
Q 021363 69 SGKLITWGSADDEGQSY-LTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSV 119 (313)
Q Consensus 69 ~G~vy~wG~n~~~Gqlg-~~~~~~~~~p~~i~~~~~~~i~~Is~G~~hs~~l 119 (313)
||+||+||.| ++|||| .........|++++.+...+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n-~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSN-DYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEE-TTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECC-CCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999 899999 6777778899999999889999999999999987
No 11
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.23 E-value=1.1e-11 Score=72.02 Aligned_cols=30 Identities=40% Similarity=0.782 Sum_probs=26.1
Q ss_pred EEEEeeCCCeEEEEeCCCCEEEEeCCCCcc
Q 021363 214 ITKVAAGGRHTLILSDMGQVWGWGYGGEGQ 243 (313)
Q Consensus 214 i~~I~~G~~h~~al~~~G~vy~wG~n~~gq 243 (313)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999997
No 12
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.23 E-value=1.3e-11 Score=71.72 Aligned_cols=30 Identities=40% Similarity=0.615 Sum_probs=25.9
Q ss_pred EEEEeecCceeEEEecCCcEEEecCCCCCC
Q 021363 106 VVKAAAGWAHCVSVTEAGEVYTWGWRECVP 135 (313)
Q Consensus 106 i~~Is~G~~hs~~lt~~G~vy~wG~n~~gq 135 (313)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999986
No 13
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.5e-12 Score=126.67 Aligned_cols=131 Identities=28% Similarity=0.459 Sum_probs=101.1
Q ss_pred CcccCCCCCCcEEEEeecCceeEEEecCCcEEEecCCCCCCCCcccccCCCCCccccCCCCCCCCCCccCCCCCCccccc
Q 021363 95 PEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGE 174 (313)
Q Consensus 95 p~~i~~~~~~~i~~Is~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 174 (313)
|..+..+...+|.+++||.+|+++++..|++|+||.|.+||+|+..
T Consensus 5 ~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~---------------------------------- 50 (850)
T KOG0941|consen 5 PRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRAL---------------------------------- 50 (850)
T ss_pred hHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhc----------------------------------
Confidence 4445555567899999999999999999999999999999998631
Q ss_pred eeeeceeeeccCCCCCCCCCCCcceeecceeeecCCCCcEEEEeeCCCeEEEEeC-------CCCEEEEeCCCCcccCCC
Q 021363 175 EVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSD-------MGQVWGWGYGGEGQLGLG 247 (313)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~h~~al~~-------~G~vy~wG~n~~gqlG~g 247 (313)
......|..++.+.+.+..+|++|.+|+++++. +|.++.+|....||+|+.
T Consensus 51 ----------------------~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~lt~e~~~fs~Ga~~~~q~~h~ 108 (850)
T KOG0941|consen 51 ----------------------YFPDAKPEPVESLKGVPLAQVSAGEAHSFALSSHTVLLTDEGKVFSFGAGSTGQLGHS 108 (850)
T ss_pred ----------------------cCCCCCCccchhhcCCcHHHHhcCCCcchhhhhchhhcchhccccccCCccccccccc
Confidence 001122777888888999999999999988876 999999999999999995
Q ss_pred CCCCCcccCeeecccccccCCCCCcceeeccccccCCCCCCccEEEEEeCCceEEEEec
Q 021363 248 SRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTD 306 (313)
Q Consensus 248 ~~~~~~~~p~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~I~~G~~~s~alt~ 306 (313)
.. +....|..+..+.. ..+.+|+||..|++++-.
T Consensus 109 ~~-~~~~~~~~v~e~i~------------------------~~~t~ia~~~~ht~a~v~ 142 (850)
T KOG0941|consen 109 LT-ENEVLPLLVLELIG------------------------SRVTRIACVRGHTLAIVP 142 (850)
T ss_pred cc-ccccccHHHHHHHh------------------------hhhHHHHHHHHHHHhhhh
Confidence 43 44455666655544 467777777766666543
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=6e-12 Score=122.47 Aligned_cols=141 Identities=25% Similarity=0.346 Sum_probs=115.4
Q ss_pred eeecCCCCceEEeecCCceEEEEeCCCCEEEecCCCCCCCccccCCCCCCCCcccCCCCCCcEEEEeecCceeEEEec--
Q 021363 44 ARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTE-- 121 (313)
Q Consensus 44 v~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~~~~~~p~~i~~~~~~~i~~Is~G~~hs~~lt~-- 121 (313)
+.++....+.++.| |..|+++++..|++|.||.| .+||+|.+.......|.+++.+.+.+..+|+||.+|+++++.
T Consensus 8 ~~~l~~k~~lq~~c-Gn~hclal~~~g~~~~wg~~-~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~~~ 85 (850)
T KOG0941|consen 8 VLILNYKHILQVGC-GNNHCLALSCAGELFVWGMN-NNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSSHT 85 (850)
T ss_pred HHHHhhhhhhhhcc-ccHHHHhhhccCCeeeccCC-ccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhhch
Confidence 34445668899999 87899999999999999999 899999984444444889998999999999999999888877
Q ss_pred -----CCcEEEecCCCCCCCCcccccCCCCCccccCCCCCCCCCCccCCCCCCccccceeeeceeeeccCCCCCCCCCCC
Q 021363 122 -----AGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGD 196 (313)
Q Consensus 122 -----~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (313)
+|.++++|....||+|+..
T Consensus 86 ~~lt~e~~~fs~Ga~~~~q~~h~~-------------------------------------------------------- 109 (850)
T KOG0941|consen 86 VLLTDEGKVFSFGAGSTGQLGHSL-------------------------------------------------------- 109 (850)
T ss_pred hhcchhccccccCCcccccccccc--------------------------------------------------------
Confidence 9999999999999998621
Q ss_pred cceeecceeeecCCCCcEEEEeeCCCeEEEEeC-CCCEEEEeCCCCc
Q 021363 197 EFFTLSPCLVTLNPGVKITKVAAGGRHTLILSD-MGQVWGWGYGGEG 242 (313)
Q Consensus 197 ~~~~~~p~~i~~~~~~~i~~I~~G~~h~~al~~-~G~vy~wG~n~~g 242 (313)
......|..+....+..+.+|+||..|+++.-. -|++|.+|.+..|
T Consensus 110 ~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sG 156 (850)
T KOG0941|consen 110 TENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASG 156 (850)
T ss_pred cccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCC
Confidence 112234555555556789999999999999876 5999999999887
No 15
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=92.40 E-value=6.8 Score=38.28 Aligned_cols=71 Identities=20% Similarity=0.229 Sum_probs=51.3
Q ss_pred CcEEEEeecC-ceeEEEecCCcEEE-ecCCCCCCCCcccccCCCCCccccCCCCCCCCCCccCCCCCCccccceeeecee
Q 021363 104 ASVVKAAAGW-AHCVSVTEAGEVYT-WGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRK 181 (313)
Q Consensus 104 ~~i~~Is~G~-~hs~~lt~~G~vy~-wG~n~~gqlG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (313)
.++.+|++|. ....+++.+|.||. -|-..+.+.|...
T Consensus 227 t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~GdsW----------------------------------------- 265 (705)
T KOG3669|consen 227 TDLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGDSW----------------------------------------- 265 (705)
T ss_pred CccceEeecCcceEEEEeeCCcEEEEecccccCCCCchh-----------------------------------------
Confidence 4789999997 88889999999864 3655555444211
Q ss_pred eeccCCCCCCCCCCCcceeecceeeecCCCCcEEEEeeCCCeEEEEeCCCCEEEE
Q 021363 182 TSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGW 236 (313)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~h~~al~~~G~vy~w 236 (313)
....+|+... .++.|+.|..-.-+|+.+|.+|.=
T Consensus 266 ----------------kdI~tP~~a~-----~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 266 ----------------KDIVTPRQAL-----EPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred ----------------hhccCccccc-----ceEEEEeccceEEEEecCCcEEEE
Confidence 1233343322 388999999999999999999864
No 16
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=89.64 E-value=5 Score=39.19 Aligned_cols=70 Identities=17% Similarity=0.156 Sum_probs=52.6
Q ss_pred cEEEEeeCC-CeEEEEeCCCCEEEE-eCCCCcccCCCCCCCCcccCeeecccccccCCCCCcceeeccccccCCCCCCcc
Q 021363 213 KITKVAAGG-RHTLILSDMGQVWGW-GYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSY 290 (313)
Q Consensus 213 ~i~~I~~G~-~h~~al~~~G~vy~w-G~n~~gqlG~g~~~~~~~~p~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 290 (313)
.+.+|++|. .-..+++++|.||.= |-....+.|. ..+.+.+|+... .
T Consensus 228 ~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~Gd--sWkdI~tP~~a~-----------------------------~ 276 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGD--SWKDIVTPRQAL-----------------------------E 276 (705)
T ss_pred ccceEeecCcceEEEEeeCCcEEEEecccccCCCCc--hhhhccCccccc-----------------------------c
Confidence 688999999 788899999998753 5554444443 234455555443 3
Q ss_pred EEEEEeCCceEEEEecCCceeeC
Q 021363 291 VKEIACGGRHSAVVTDMSYPIAR 313 (313)
Q Consensus 291 i~~I~~G~~~s~alt~~G~vya~ 313 (313)
++.|+.|....-+|+++|.||-|
T Consensus 277 ~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 277 PVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred eEEEEeccceEEEEecCCcEEEE
Confidence 78999999999999999999876
No 17
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=88.30 E-value=0.86 Score=26.81 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=23.0
Q ss_pred ccEEEEEeCC-ceEEEEecCCceeeC
Q 021363 289 SYVKEIACGG-RHSAVVTDMSYPIAR 313 (313)
Q Consensus 289 ~~i~~I~~G~-~~s~alt~~G~vya~ 313 (313)
..+++|++|. +...+++.+|.+|-|
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 4689999999 999999999999976
No 18
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.84 E-value=28 Score=37.48 Aligned_cols=61 Identities=11% Similarity=0.157 Sum_probs=37.5
Q ss_pred ceeeeeCCcEEEecCCC-CCC----CCCCCCceeeEeeecCCCCceEEeecCCceEEEEeCCCCEEEecCC
Q 021363 13 KMEECKETVVYMWGYLP-GTS----PEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSA 78 (313)
Q Consensus 13 ~~~l~~~g~vy~wG~n~-G~l----g~~~~~~~p~pv~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n 78 (313)
..=++-|.++|.|-.+. +.+ |...+...-..|+-..+.-+-.| .|.++|..-=+++..|-.
T Consensus 92 RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I-----qhlLvvaT~~ei~ilgV~ 157 (1311)
T KOG1900|consen 92 RAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI-----QHLLVVATPVEIVILGVS 157 (1311)
T ss_pred ceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh-----heeEEecccceEEEEEEE
Confidence 34467799999998873 433 22223333333433333333333 499999998899998875
No 19
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=85.68 E-value=0.06 Score=55.90 Aligned_cols=119 Identities=15% Similarity=0.118 Sum_probs=74.5
Q ss_pred ccceeeeeCCcEEEecCC--CCCC---CCCCCCceeeEeee-cCCCCceEEeecCCceEEEEeCCCCEEEecCCCCCCCc
Q 021363 11 NEKMEECKETVVYMWGYL--PGTS---PEKSPILSPIPARL-CGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQS 84 (313)
Q Consensus 11 ~~~~~l~~~g~vy~wG~n--~G~l---g~~~~~~~p~pv~~-~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~Gql 84 (313)
.|+..|..+|++|.|-+. +|.. -......+|....+ +.+.+|+..++ ..--.-++|++|+|-+|=.- .|
T Consensus 384 ~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSa-nniR~si~T~nghlasWlDE--cg-- 458 (3015)
T KOG0943|consen 384 SELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSA-NNIRASIATENGHLASWLDE--CG-- 458 (3015)
T ss_pred HHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeec-CceeeeeeecCCchhhHHhh--hh--
Confidence 457788899999999997 4432 22223344443332 23788999976 32347789999999999542 11
Q ss_pred cccC-CCCCCCCcccCCCCCCcEEEEeecCceeEEEecCCcEEEecCCCCCC
Q 021363 85 YLTS-GKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVP 135 (313)
Q Consensus 85 g~~~-~~~~~~p~~i~~~~~~~i~~Is~G~~hs~~lt~~G~vy~wG~n~~gq 135 (313)
.+. .+.....+...-..+..+++..|-..|+++...|+.+|-||--.+-|
T Consensus 459 -agV~fkLa~ea~Tkieed~~maVqd~~~adhlaAf~~dniihWcGiVPf~e 509 (3015)
T KOG0943|consen 459 -AGVAFKLAHEAQTKIEEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFSE 509 (3015)
T ss_pred -hhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhceeeEEeeeeehh
Confidence 110 01111111111123456788889999999999999999999755544
No 20
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=84.96 E-value=18 Score=39.92 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=22.2
Q ss_pred EEEEeecCceeEEEecCCcEEEecCCCCCC
Q 021363 106 VVKAAAGWAHCVSVTEAGEVYTWGWRECVP 135 (313)
Q Consensus 106 i~~Is~G~~hs~~lt~~G~vy~wG~n~~gq 135 (313)
+++=..|..|+++|.+++.=|.=|||-.-.
T Consensus 560 likd~~GQ~Hs~aLde~~~~~~pGWNLSd~ 589 (1774)
T PF11725_consen 560 LIKDRQGQRHSHALDEQGSQLQPGWNLSDA 589 (1774)
T ss_pred EEeccCCceeeccccccCCccCCCCcccce
Confidence 444567788888888888888878876643
No 21
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=76.14 E-value=5 Score=23.41 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=22.3
Q ss_pred CcEEEEeecC-ceeEEEecCCcEEEe
Q 021363 104 ASVVKAAAGW-AHCVSVTEAGEVYTW 128 (313)
Q Consensus 104 ~~i~~Is~G~-~hs~~lt~~G~vy~w 128 (313)
.++++|++|. +...+++.+|.||..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 6789999998 999999999999963
No 22
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=74.49 E-value=16 Score=31.48 Aligned_cols=29 Identities=28% Similarity=0.440 Sum_probs=23.2
Q ss_pred CCCceEEeecCCceEEEEeCCCCEEEecCC
Q 021363 49 GDSWKDVCGGGCGFALATSESGKLITWGSA 78 (313)
Q Consensus 49 ~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n 78 (313)
+.++..+.+-+ .|.++||.+|.+|.|-..
T Consensus 12 gs~~~~l~~~~-~~Ll~iT~~G~l~vWnl~ 40 (219)
T PF07569_consen 12 GSPVSFLECNG-SYLLAITSSGLLYVWNLK 40 (219)
T ss_pred CCceEEEEeCC-CEEEEEeCCCeEEEEECC
Confidence 44677777734 589999999999999876
No 23
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=70.06 E-value=6 Score=34.15 Aligned_cols=28 Identities=18% Similarity=0.358 Sum_probs=25.3
Q ss_pred CCcEEEEeecCceeEEEecCCcEEEecC
Q 021363 103 EASVVKAAAGWAHCVSVTEAGEVYTWGW 130 (313)
Q Consensus 103 ~~~i~~Is~G~~hs~~lt~~G~vy~wG~ 130 (313)
+.+++.+.|-..+.++||++|.+|+|=-
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl 39 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNL 39 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEEC
Confidence 4788889999999999999999999953
No 24
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=70.04 E-value=28 Score=38.60 Aligned_cols=48 Identities=13% Similarity=0.152 Sum_probs=29.1
Q ss_pred cEEEEeeCCCe-EEEEeCCCCEEEEeCCCCcccCCCCCCCCcccCeeec
Q 021363 213 KITKVAAGGRH-TLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIP 260 (313)
Q Consensus 213 ~i~~I~~G~~h-~~al~~~G~vy~wG~n~~gqlG~g~~~~~~~~p~~i~ 260 (313)
.|+.|+.=..| .+||+++|++|..=.-.+-..-.+......+.|..++
T Consensus 745 ~ik~l~lD~~~nL~Alt~~G~Lf~~~k~~WQ~~~~~~~~~~~W~~v~lP 793 (1774)
T PF11725_consen 745 EIKDLALDEKQNLYALTSTGELFRLPKEAWQGNAEGDQMAAKWQKVALP 793 (1774)
T ss_pred chhheeeccccceeEecCCCceeecCHHHhhCcccCCccccCceeccCC
Confidence 78888888774 5678899999975444333322232223444555555
No 25
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=68.22 E-value=22 Score=35.95 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=18.2
Q ss_pred ccEEEEEeCCc----eEEEEecCCcee
Q 021363 289 SYVKEIACGGR----HSAVVTDMSYPI 311 (313)
Q Consensus 289 ~~i~~I~~G~~----~s~alt~~G~vy 311 (313)
.....|+||-. .+++||..|.|.
T Consensus 218 n~f~avaCg~gicAestfait~qGhLv 244 (1080)
T KOG1408|consen 218 NEFLAVACGVGICAESTFAITAQGHLV 244 (1080)
T ss_pred chhhhhhhcCcccccceEEEeccccee
Confidence 55778888865 899999988764
No 26
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=65.97 E-value=1.7e+02 Score=30.27 Aligned_cols=83 Identities=16% Similarity=0.143 Sum_probs=49.0
Q ss_pred EeeecCCCCceEEeec-CCceEEEEeCCCCEEEecCCCCCCCccccCCCCCCCCcccCCCCCCcEEEEeecCc--eeEEE
Q 021363 43 PARLCGGDSWKDVCGG-GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWA--HCVSV 119 (313)
Q Consensus 43 pv~~~~~~~i~~i~~~-g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~~~~~~p~~i~~~~~~~i~~Is~G~~--hs~~l 119 (313)
-+++..+..++.+..+ ...+.+++|++|++|.+-.+ +-- .|. ......-..+.+..+.+|+.+.+... +.+++
T Consensus 518 aikLKegD~L~~~~~~~t~d~LllfTs~Gr~yrf~v~-eIP-~GR--~aGgpV~~~L~L~~gE~Iv~~~~v~~~~~lLla 593 (735)
T TIGR01062 518 TLKYKAGDSEKAIIEGKSNQKVVFIDSTGRSYALDPD-NLP-SAR--GQGEPLTGKLLLPIGATITNILMYSPNQLLLMA 593 (735)
T ss_pred ccCcCCCCeEEEEEEecCCCEEEEEECCCeEEEEEhH-hcC-cCc--cCCceeEeeecCCCCCEEEEEEEecCCcEEEEE
Confidence 3344445555555442 33358889999999999776 321 121 11111222234456778888887643 57888
Q ss_pred ecCCcEEEec
Q 021363 120 TEAGEVYTWG 129 (313)
Q Consensus 120 t~~G~vy~wG 129 (313)
|+.|.++-.-
T Consensus 594 T~~GyGKrt~ 603 (735)
T TIGR01062 594 SDAGYGFLCN 603 (735)
T ss_pred EcCCcEEEEE
Confidence 8888776653
No 27
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=56.98 E-value=2.5e+02 Score=29.35 Aligned_cols=78 Identities=14% Similarity=0.058 Sum_probs=42.8
Q ss_pred CCCceEEe-ecCCceEEEEeCCCCEEEecCCCCCCCccccCCCCCCCCcccCCCCCCcEEEEeec-----CceeEEEecC
Q 021363 49 GDSWKDVC-GGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG-----WAHCVSVTEA 122 (313)
Q Consensus 49 ~~~i~~i~-~~g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~~~~~~p~~i~~~~~~~i~~Is~G-----~~hs~~lt~~ 122 (313)
+..++.+. |-...+.+++|++|++|..-.. +--..+.. ..-......+.+..+.+|+.+.+- ....+++|.+
T Consensus 534 ~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~-~IP~~~r~-~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~ 611 (800)
T TIGR01063 534 DDFIEQLLVASTHDYLLFFTNRGKVYWLKVY-QIPEASRT-AKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKN 611 (800)
T ss_pred CCeeEEEEEecCCCeEEEEeCCCcEEEEEhh-hCcCCCcC-CCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCC
Confidence 34444442 2244468889999999998443 22111110 001111122345566778777662 2357788888
Q ss_pred CcEEEe
Q 021363 123 GEVYTW 128 (313)
Q Consensus 123 G~vy~w 128 (313)
|.+.-.
T Consensus 612 GyiKRi 617 (800)
T TIGR01063 612 GVVKKT 617 (800)
T ss_pred CEEEEE
Confidence 877654
No 28
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=56.96 E-value=32 Score=19.10 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=20.2
Q ss_pred CcEEEEeeCCCeEEEEeCCCCEEE
Q 021363 212 VKITKVAAGGRHTLILSDMGQVWG 235 (313)
Q Consensus 212 ~~i~~I~~G~~h~~al~~~G~vy~ 235 (313)
..|..|++|.....+.|+.+-|-.
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRi 25 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRI 25 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEe
Confidence 578999999999999999886543
No 29
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=54.63 E-value=21 Score=38.32 Aligned_cols=80 Identities=19% Similarity=0.274 Sum_probs=56.3
Q ss_pred CCcEEEEeecCceeEEEecCCcEEEecCCCCCCCCcccccCCCCCccccCCCCCCCCCCccCCCCCCccccceeeeceee
Q 021363 103 EASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKT 182 (313)
Q Consensus 103 ~~~i~~Is~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (313)
..+++.|.+-.+..++|..+|++|.|-+...--|-. ++
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEgldd---------pl--------------------------------- 410 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDD---------PL--------------------------------- 410 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCC---------hh---------------------------------
Confidence 468999999999999999999999999877531110 00
Q ss_pred eccCCCCCCCCCCCcceeeccee-eecCCCCcEEEEeeCCCeEEEEeCCCCEEEE
Q 021363 183 SSAREESENPASGDEFFTLSPCL-VTLNPGVKITKVAAGGRHTLILSDMGQVWGW 236 (313)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~p~~-i~~~~~~~i~~I~~G~~h~~al~~~G~vy~w 236 (313)
........|.- .-.+.+.+|+..++..-..-++|++|+|-.|
T Consensus 411 ------------ai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlasW 453 (3015)
T KOG0943|consen 411 ------------AINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLASW 453 (3015)
T ss_pred ------------hcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhhH
Confidence 00001112221 1234667999999998888999999999999
No 30
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=53.36 E-value=2.5e+02 Score=29.47 Aligned_cols=67 Identities=22% Similarity=0.286 Sum_probs=42.2
Q ss_pred EEEEeCCCC-EEEecCCCCCCCccc-cCCCCCCCCcccCCCCCCcEEEEeecCceeEEEecCCcE--EEecCCCC
Q 021363 63 ALATSESGK-LITWGSADDEGQSYL-TSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEV--YTWGWREC 133 (313)
Q Consensus 63 ~~~lt~~G~-vy~wG~n~~~Gqlg~-~~~~~~~~p~~i~~~~~~~i~~Is~G~~hs~~lt~~G~v--y~wG~n~~ 133 (313)
.++++.+|+ |+++|.+ |-.-. ....+...|..+.. ....|..|+|-.+|.+.-++++.| |-+++...
T Consensus 18 ~i~~d~~gefi~tcgsd---g~ir~~~~~sd~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 18 LICYDPDGEFICTCGSD---GDIRKWKTNSDEEEPETIDI-SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred EEEEcCCCCEEEEecCC---CceEEeecCCcccCCchhhc-cCceeEEEeecccceEEeeccceEEEeeCCCCCc
Confidence 555666665 5667765 22211 11223356666654 567899999999999998888874 66655443
No 31
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=52.74 E-value=1.7e+02 Score=26.31 Aligned_cols=65 Identities=26% Similarity=0.373 Sum_probs=33.6
Q ss_pred CceEEEEeCCCCEEEecC-CCCCCCccccCCCCCCCCcccCCCCCCcEEEEe--ecCceeEEEecCCcEEEecC
Q 021363 60 CGFALATSESGKLITWGS-ADDEGQSYLTSGKHGETPEPFPLPTEASVVKAA--AGWAHCVSVTEAGEVYTWGW 130 (313)
Q Consensus 60 ~~h~~~lt~~G~vy~wG~-n~~~Gqlg~~~~~~~~~p~~i~~~~~~~i~~Is--~G~~hs~~lt~~G~vy~wG~ 130 (313)
++|+++.-+ +++|.||- |++.|.+-.-. ...|.. ..-...+|.-.. +-+-|++++- .+..|.+|.
T Consensus 80 YGHtvV~y~-d~~yvWGGRND~egaCN~Ly---~fDp~t-~~W~~p~v~G~vPgaRDGHsAcV~-gn~MyiFGG 147 (392)
T KOG4693|consen 80 YGHTVVEYQ-DKAYVWGGRNDDEGACNLLY---EFDPET-NVWKKPEVEGFVPGARDGHSACVW-GNQMYIFGG 147 (392)
T ss_pred cCceEEEEc-ceEEEEcCccCcccccceee---eecccc-ccccccceeeecCCccCCceeeEE-CcEEEEecC
Confidence 458776654 48999975 53466552110 011110 000011222222 3478998887 557888884
No 32
>PRK05560 DNA gyrase subunit A; Validated
Probab=52.38 E-value=3e+02 Score=28.83 Aligned_cols=78 Identities=12% Similarity=0.029 Sum_probs=43.8
Q ss_pred CCCceEEee-cCCceEEEEeCCCCEEEecCCCCCCCccccCCCCCCCCcccCCCCCCcEEEEeecC-----ceeEEEecC
Q 021363 49 GDSWKDVCG-GGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGW-----AHCVSVTEA 122 (313)
Q Consensus 49 ~~~i~~i~~-~g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~~~~~~p~~i~~~~~~~i~~Is~G~-----~hs~~lt~~ 122 (313)
+..++.+.. -...+.+++|+.|++|..-.. +--..+.. ..-......+.+..+.+|+.+.+-. ...+++|++
T Consensus 536 ~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~-~iP~~~~~-~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~ 613 (805)
T PRK05560 536 DDFVEHLFVASTHDTLLFFTNRGRVYRLKVY-EIPEASRT-ARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKN 613 (805)
T ss_pred CCeeEEEEEecCCCeEEEEecCCeEEEEEhh-hCcCCCcC-CCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCC
Confidence 334444432 233468889999999998665 22222110 0001111223445567788877754 357888889
Q ss_pred CcEEEe
Q 021363 123 GEVYTW 128 (313)
Q Consensus 123 G~vy~w 128 (313)
|.+.-.
T Consensus 614 GyiKRi 619 (805)
T PRK05560 614 GTVKKT 619 (805)
T ss_pred CEEEEE
Confidence 877654
No 33
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=51.84 E-value=38 Score=31.04 Aligned_cols=69 Identities=16% Similarity=0.224 Sum_probs=43.0
Q ss_pred ceEEeecCCceEE-EEeCCCCEEEecCCCCCCCccccCCCCCCCCcccCCCCCCcEEEEeec--CceeEEEecCCcEEEe
Q 021363 52 WKDVCGGGCGFAL-ATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG--WAHCVSVTEAGEVYTW 128 (313)
Q Consensus 52 i~~i~~~g~~h~~-~lt~~G~vy~wG~n~~~Gqlg~~~~~~~~~p~~i~~~~~~~i~~Is~G--~~hs~~lt~~G~vy~w 128 (313)
.+..+.--+.-.+ +..+.|+||.|-... ......++.........|.|.+-. ....+++++++.||.|
T Consensus 310 firf~~d~~~~~la~gnq~g~v~vwdL~~---------~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrw 380 (385)
T KOG1034|consen 310 FIRFAFDPWQKMLALGNQSGKVYVWDLDN---------NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRW 380 (385)
T ss_pred EEEEeecHHHHHHhhccCCCcEEEEECCC---------CCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEE
Confidence 3444432333334 456789999998741 122234555555566778888777 4556667889999998
Q ss_pred c
Q 021363 129 G 129 (313)
Q Consensus 129 G 129 (313)
-
T Consensus 381 d 381 (385)
T KOG1034|consen 381 D 381 (385)
T ss_pred E
Confidence 5
No 34
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=49.21 E-value=15 Score=21.14 Aligned_cols=15 Identities=20% Similarity=-0.037 Sum_probs=12.6
Q ss_pred ceEEEEecCCceeeC
Q 021363 299 RHSAVVTDMSYPIAR 313 (313)
Q Consensus 299 ~~s~alt~~G~vya~ 313 (313)
++..|++.+|+||.|
T Consensus 1 ~~VWav~~~G~v~~R 15 (32)
T PF06462_consen 1 DQVWAVTSDGSVYFR 15 (32)
T ss_pred CeEEEEcCCCCEEEE
Confidence 356799999999987
No 35
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=45.81 E-value=64 Score=29.04 Aligned_cols=96 Identities=14% Similarity=0.054 Sum_probs=55.6
Q ss_pred ceeeeeCCcEEEecCCC--CCCCCCCCCceeeEeeecCCCCceEEeecCCceEEEEeCCCCEEEecCCCCCCCccccCCC
Q 021363 13 KMEECKETVVYMWGYLP--GTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGK 90 (313)
Q Consensus 13 ~~~l~~~g~vy~wG~n~--G~lg~~~~~~~p~pv~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~~ 90 (313)
.+++..||..|++-... ++++..+-....-|+. .+-.- +--.+.+++.+|+||.-|.+-.+|.|--....
T Consensus 108 giv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp-------~~~a~-~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~ 179 (353)
T COG4257 108 GIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLP-------LEHAD-ANLETAVFDPWGNLWFTGQIGAYGRLDPARNV 179 (353)
T ss_pred eEEECCCCCeeEecCcceeEEecCcccceEEeecc-------cccCC-CcccceeeCCCccEEEeeccccceecCcccCc
Confidence 56778889999886642 2333322222222221 22222 22368899999999999987566766221111
Q ss_pred CCCCCcccCCCCCCcEEEEeecCceeEEEecCCcEEEe
Q 021363 91 HGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTW 128 (313)
Q Consensus 91 ~~~~p~~i~~~~~~~i~~Is~G~~hs~~lt~~G~vy~w 128 (313)
....|.| . -+.-..++.|-||+||.-
T Consensus 180 i~vfpaP----q--------G~gpyGi~atpdGsvwya 205 (353)
T COG4257 180 ISVFPAP----Q--------GGGPYGICATPDGSVWYA 205 (353)
T ss_pred eeeeccC----C--------CCCCcceEECCCCcEEEE
Confidence 1112222 1 345677899999999975
No 36
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=43.76 E-value=29 Score=20.81 Aligned_cols=18 Identities=17% Similarity=0.447 Sum_probs=15.5
Q ss_pred eEEEEeCCCCEEEEeCCC
Q 021363 223 HTLILSDMGQVWGWGYGG 240 (313)
Q Consensus 223 h~~al~~~G~vy~wG~n~ 240 (313)
+.++++.+|.+|+-|...
T Consensus 16 ~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 16 NGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred EEEEECCCCCEEEEEeec
Confidence 578999999999999754
No 37
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=43.49 E-value=22 Score=22.09 Aligned_cols=18 Identities=11% Similarity=0.156 Sum_probs=11.9
Q ss_pred CCeEEEEeCCCCEEEEeC
Q 021363 221 GRHTLILSDMGQVWGWGY 238 (313)
Q Consensus 221 ~~h~~al~~~G~vy~wG~ 238 (313)
..|+++...++++|++|=
T Consensus 3 ~~h~~~~~~~~~i~v~GG 20 (49)
T PF13418_consen 3 YGHSAVSIGDNSIYVFGG 20 (49)
T ss_dssp BS-EEEEE-TTEEEEE--
T ss_pred ceEEEEEEeCCeEEEECC
Confidence 368888888889999974
No 38
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=42.33 E-value=1.4e+02 Score=28.38 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=21.0
Q ss_pred cEEEEeeCCCeEEEEe--CCCCEEEEeCCC
Q 021363 213 KITKVAAGGRHTLILS--DMGQVWGWGYGG 240 (313)
Q Consensus 213 ~i~~I~~G~~h~~al~--~~G~vy~wG~n~ 240 (313)
-|.+.++|.+-.++.+ +|++||.|=.-.
T Consensus 442 iIrSCFgg~~~~fiaSGSED~kvyIWhr~s 471 (519)
T KOG0293|consen 442 IIRSCFGGGNDKFIASGSEDSKVYIWHRIS 471 (519)
T ss_pred EEEeccCCCCcceEEecCCCceEEEEEccC
Confidence 4667777777676664 799999997654
No 39
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=40.42 E-value=3e+02 Score=25.32 Aligned_cols=15 Identities=13% Similarity=0.406 Sum_probs=12.6
Q ss_pred CeEEEEeCCCCEEEE
Q 021363 222 RHTLILSDMGQVWGW 236 (313)
Q Consensus 222 ~h~~al~~~G~vy~w 236 (313)
++.++.+.+|+||+|
T Consensus 362 ~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 362 DGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEeCCceEEEe
Confidence 467888899999987
No 40
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=40.00 E-value=2.5e+02 Score=26.22 Aligned_cols=69 Identities=23% Similarity=0.218 Sum_probs=37.2
Q ss_pred CceEEeecCCceE-EEEeCCCC-EEEecCCCCCCCccccCCCCCCCCcccCCCCCCcEEEEeec-CceeEEEecCCcEEE
Q 021363 51 SWKDVCGGGCGFA-LATSESGK-LITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG-WAHCVSVTEAGEVYT 127 (313)
Q Consensus 51 ~i~~i~~~g~~h~-~~lt~~G~-vy~wG~n~~~Gqlg~~~~~~~~~p~~i~~~~~~~i~~Is~G-~~hs~~lt~~G~vy~ 127 (313)
.+..|..++.-|. ++.+.||+ +|..+. + |.+ ..+.+.....+..|..| .-+.++++.||+...
T Consensus 28 ~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r--d-g~v-----------sviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~ 93 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPDGRYLYVANR--D-GTV-----------SVIDLATGKVVATIKVGGNPRGIAVSPDGKYVY 93 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT-SSEEEEEET--T-SEE-----------EEEETTSSSEEEEEE-SSEEEEEEE--TTTEEE
T ss_pred EEEEEcCCCCceeEEEecCCCCEEEEEcC--C-CeE-----------EEEECCcccEEEEEecCCCcceEEEcCCCCEEE
Confidence 3455655333364 55678887 776542 2 322 24555556677888888 667888999998555
Q ss_pred ecCCCC
Q 021363 128 WGWREC 133 (313)
Q Consensus 128 wG~n~~ 133 (313)
-++..-
T Consensus 94 v~n~~~ 99 (369)
T PF02239_consen 94 VANYEP 99 (369)
T ss_dssp EEEEET
T ss_pred EEecCC
Confidence 444333
No 41
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=38.06 E-value=2.6e+02 Score=24.88 Aligned_cols=21 Identities=38% Similarity=0.741 Sum_probs=16.7
Q ss_pred cCceeEEEecCCcEEEecCCC
Q 021363 112 GWAHCVSVTEAGEVYTWGWRE 132 (313)
Q Consensus 112 G~~hs~~lt~~G~vy~wG~n~ 132 (313)
|.-|++-.+-+|++|+-|+-+
T Consensus 268 gpVhcVrFSPdGE~yAsGSED 288 (334)
T KOG0278|consen 268 GPVHCVRFSPDGELYASGSED 288 (334)
T ss_pred CceEEEEECCCCceeeccCCC
Confidence 456788888899999998754
No 42
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=37.95 E-value=44 Score=23.91 Aligned_cols=22 Identities=5% Similarity=0.073 Sum_probs=19.1
Q ss_pred EEEEEeC-CceEEEEecCCceee
Q 021363 291 VKEIACG-GRHSAVVTDMSYPIA 312 (313)
Q Consensus 291 i~~I~~G-~~~s~alt~~G~vya 312 (313)
=..|+|. ....++|+++|.+|+
T Consensus 18 S~~Vs~~~~gs~ValS~dg~l~G 40 (81)
T PF03785_consen 18 SISVSCDVPGSYVALSQDGDLYG 40 (81)
T ss_dssp EEEEEESSTT-EEEEEETTEEEE
T ss_pred EEEEEecCCCcEEEEecCCEEEE
Confidence 4789999 999999999999997
No 43
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=36.84 E-value=1.3e+02 Score=23.00 Aligned_cols=25 Identities=16% Similarity=0.025 Sum_probs=19.6
Q ss_pred EEEEeecCceeEEEecCCcEEEecC
Q 021363 106 VVKAAAGWAHCVSVTEAGEVYTWGW 130 (313)
Q Consensus 106 i~~Is~G~~hs~~lt~~G~vy~wG~ 130 (313)
.+++.|-..+-+.+..||.|-+-+.
T Consensus 2 ~~~Ly~~~~~~L~i~~~g~V~gt~~ 26 (122)
T PF00167_consen 2 HVQLYCRTGYFLQINPNGTVDGTGD 26 (122)
T ss_dssp EEEEEETTSEEEEEETTSBEEEESS
T ss_pred CEEEEECCCeEEEECCCCeEeCCCC
Confidence 5677788777888889999987654
No 44
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=36.34 E-value=1.5e+02 Score=26.79 Aligned_cols=100 Identities=11% Similarity=0.064 Sum_probs=56.4
Q ss_pred ceeeeeCCcEEEecCCCCCCCCCCCCceeeEeeecCCCCceEEee--cCCceEEEEeCCCCEEEecCCCCCCCccccCCC
Q 021363 13 KMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCG--GGCGFALATSESGKLITWGSADDEGQSYLTSGK 90 (313)
Q Consensus 13 ~~~l~~~g~vy~wG~n~G~lg~~~~~~~p~pv~~~~~~~i~~i~~--~g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~~ 90 (313)
.+....||.||.=+...|.+|+.... -= .++.+.. +..-|.+++..||..|.+-....-+.+...+..
T Consensus 66 dvapapdG~VWft~qg~gaiGhLdP~----tG------ev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~e 135 (353)
T COG4257 66 DVAPAPDGAVWFTAQGTGAIGHLDPA----TG------EVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLE 135 (353)
T ss_pred ccccCCCCceEEecCccccceecCCC----CC------ceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccc
Confidence 45667899999888777777764321 11 2233322 122288889999999987654111111111111
Q ss_pred CCCCCcccCCCCCCcEEEEeecCceeEEEecCCcEEEecCC
Q 021363 91 HGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWR 131 (313)
Q Consensus 91 ~~~~p~~i~~~~~~~i~~Is~G~~hs~~lt~~G~vy~wG~n 131 (313)
....|.+ .+.+-+.--+++++..|+||.-|.+
T Consensus 136 vt~f~lp---------~~~a~~nlet~vfD~~G~lWFt~q~ 167 (353)
T COG4257 136 VTRFPLP---------LEHADANLETAVFDPWGNLWFTGQI 167 (353)
T ss_pred eEEeecc---------cccCCCcccceeeCCCccEEEeecc
Confidence 1112222 2334455667889999999988863
No 45
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=36.01 E-value=1.4e+02 Score=27.99 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=23.1
Q ss_pred cEEEEeeCCCe---EEEEeCCCCEEEEeCCCCccc
Q 021363 213 KITKVAAGGRH---TLILSDMGQVWGWGYGGEGQL 244 (313)
Q Consensus 213 ~i~~I~~G~~h---~~al~~~G~vy~wG~n~~gql 244 (313)
.++.+.++++| .+++..+|++.-|-.+.+-.+
T Consensus 161 ~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~Wt~l 195 (373)
T PLN03215 161 ALVKVKEGDNHRDGVLGIGRDGKINYWDGNVLKAL 195 (373)
T ss_pred EEEEeecCCCcceEEEEEeecCcEeeecCCeeeEc
Confidence 45556778876 777788999999976555443
No 46
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=35.60 E-value=5.4e+02 Score=26.96 Aligned_cols=114 Identities=8% Similarity=0.032 Sum_probs=59.5
Q ss_pred ccceeeeeCCcEEEecCC---C-CCCCCCCCCceeeEeeecCCCCceEEeecC----CceEEEEeCCCCEEEecCCCCCC
Q 021363 11 NEKMEECKETVVYMWGYL---P-GTSPEKSPILSPIPARLCGGDSWKDVCGGG----CGFALATSESGKLITWGSADDEG 82 (313)
Q Consensus 11 ~~~~~l~~~g~vy~wG~n---~-G~lg~~~~~~~p~pv~~~~~~~i~~i~~~g----~~h~~~lt~~G~vy~wG~n~~~G 82 (313)
+.-++.|++|++|..-.. . +....+.... ..+++..+.+|+.+.+.. ..+.+++|.+|.+...-.. ++-
T Consensus 547 d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~i~--~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~-~~~ 623 (800)
T TIGR01063 547 DYLLFFTNRGKVYWLKVYQIPEASRTAKGKPIV--NLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLT-EFS 623 (800)
T ss_pred CeEEEEeCCCcEEEEEhhhCcCCCcCCCCcCHH--HhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhH-Hhh
Confidence 336677788999988442 1 1222222111 112445567777766521 1256778999988776443 221
Q ss_pred CccccCCCCCCCCcccCCCCCCcEEEEe--ecCceeEEEecCCcEEEecCCCC
Q 021363 83 QSYLTSGKHGETPEPFPLPTEASVVKAA--AGWAHCVSVTEAGEVYTWGWREC 133 (313)
Q Consensus 83 qlg~~~~~~~~~p~~i~~~~~~~i~~Is--~G~~hs~~lt~~G~vy~wG~n~~ 133 (313)
.... .--..+.+..+..++.+. ...++.+++|++|++|.+-....
T Consensus 624 ~~~r------~G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eI 670 (800)
T TIGR01063 624 NIRS------NGIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDV 670 (800)
T ss_pred hhcc------CCcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhc
Confidence 1000 000011112233444433 33567899999999998755443
No 47
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=34.69 E-value=6.1e+02 Score=27.26 Aligned_cols=80 Identities=13% Similarity=0.070 Sum_probs=42.7
Q ss_pred CCCCceEEee-cCCceEEEEeCCCCEEEecCCCCCCCccccCCCCCCCCcccC-CC-CCCcEEEEeecCc-----eeEEE
Q 021363 48 GGDSWKDVCG-GGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFP-LP-TEASVVKAAAGWA-----HCVSV 119 (313)
Q Consensus 48 ~~~~i~~i~~-~g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~~~~~~p~~i~-~~-~~~~i~~Is~G~~-----hs~~l 119 (313)
.+..+.++.. ....+.+++|+.|++|.--.. +--..... ..-...-..++ +. .+.+|+.+.+-.+ +.+++
T Consensus 550 e~D~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy-~IPe~~~~-~~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~ 627 (957)
T PRK13979 550 EGDFNKFLIQSNTKDTLLIFTDKGNMYQIKGI-NIPEFKWK-EKGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFI 627 (957)
T ss_pred CCCceEEEEEEcCCCEEEEEECCCeEEEEEee-eCCCCCcC-CCCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEE
Confidence 3444555433 233468889999999987554 21111000 00011111221 21 3677777777632 46888
Q ss_pred ecCCcEEEec
Q 021363 120 TEAGEVYTWG 129 (313)
Q Consensus 120 t~~G~vy~wG 129 (313)
|++|.|.-.=
T Consensus 628 Tk~G~VKrt~ 637 (957)
T PRK13979 628 TDSGGIKKTS 637 (957)
T ss_pred ECCCeEEEEe
Confidence 8899887653
No 48
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=34.47 E-value=1.1e+02 Score=28.09 Aligned_cols=57 Identities=14% Similarity=0.293 Sum_probs=35.3
Q ss_pred eeeCCcEEEecCCCCCCCCCCCCceeeEeeecCCCCceEEeecCCc-eEEEEeCCCCEEEecC
Q 021363 16 ECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCG-FALATSESGKLITWGS 77 (313)
Q Consensus 16 l~~~g~vy~wG~n~G~lg~~~~~~~p~pv~~~~~~~i~~i~~~g~~-h~~~lt~~G~vy~wG~ 77 (313)
....|+||+|--. ...+...++......+..|+|.+..-++ ..+++++++.||.|-.
T Consensus 325 gnq~g~v~vwdL~-----~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 325 GNQSGKVYVWDLD-----NNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred ccCCCcEEEEECC-----CCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 3457888888542 0111134455555556678888763333 5677899999999963
No 49
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=32.08 E-value=2.1e+02 Score=27.55 Aligned_cols=51 Identities=14% Similarity=0.213 Sum_probs=30.6
Q ss_pred eEEEEeCCCCEEEecCCCCCCCccccCCCCCCCCcccCCCCCCcEEEEeecCceeEEEecCCcEEEecCCC
Q 021363 62 FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRE 132 (313)
Q Consensus 62 h~~~lt~~G~vy~wG~n~~~Gqlg~~~~~~~~~p~~i~~~~~~~i~~Is~G~~hs~~lt~~G~vy~wG~n~ 132 (313)
+.++...+|+||.|-.+ ..-.+ .+.++=-|=..-+++++-+|..++.|++.
T Consensus 358 ~l~~~~~~GeV~v~nl~-~~~~~-------------------~rf~D~G~v~gts~~~S~ng~ylA~GS~~ 408 (514)
T KOG2055|consen 358 ELLASGGTGEVYVWNLR-QNSCL-------------------HRFVDDGSVHGTSLCISLNGSYLATGSDS 408 (514)
T ss_pred EEEEEcCCceEEEEecC-CcceE-------------------EEEeecCccceeeeeecCCCceEEeccCc
Confidence 67777789999999877 22111 11111111133456777888888988754
No 50
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=32.00 E-value=1.2e+02 Score=26.45 Aligned_cols=61 Identities=10% Similarity=0.068 Sum_probs=37.4
Q ss_pred CCceEEEEeCCCCEEEecCCCCCCCccccCCCCCCCCcccCCCCCCcEEEEeecCc--eeEEEecCCcEEEecC
Q 021363 59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWA--HCVSVTEAGEVYTWGW 130 (313)
Q Consensus 59 g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~~~~~~p~~i~~~~~~~i~~Is~G~~--hs~~lt~~G~vy~wG~ 130 (313)
+..-.++.+.+|.||.|-.| .+|++- ..+......-.--|..+.. -.+.-..+|.+++|--
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n-~~g~~~----------d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~ 131 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWN-LEGAHS----------DRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNI 131 (238)
T ss_pred cCceEEeecccceEEEecCC-ccchHH----------HhhhcccccceeccccccccceeEEeccCCceeeecc
Confidence 33467788999999999999 677752 1111111222233445555 4455557899999854
No 51
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=30.46 E-value=76 Score=22.73 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=27.9
Q ss_pred CCcEEEEeeC-CCeEEEEeCCCCEEEEeCCCCcccCC
Q 021363 211 GVKITKVAAG-GRHTLILSDMGQVWGWGYGGEGQLGL 246 (313)
Q Consensus 211 ~~~i~~I~~G-~~h~~al~~~G~vy~wG~n~~gqlG~ 246 (313)
+..=..|+|. ..-.++|++||.+|+-+--..|.+-.
T Consensus 15 ~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~ati 51 (81)
T PF03785_consen 15 GQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNATI 51 (81)
T ss_dssp T-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEEEE
T ss_pred cccEEEEEecCCCcEEEEecCCEEEEEEEecCceEEE
Confidence 3466789999 89999999999999999876887644
No 52
>PRK05560 DNA gyrase subunit A; Validated
Probab=29.79 E-value=6.8e+02 Score=26.29 Aligned_cols=111 Identities=10% Similarity=0.051 Sum_probs=58.5
Q ss_pred ceeeeeCCcEEEecCC---C-CCCCCCCCCceeeEeeecCCCCceEEeecC----CceEEEEeCCCCEEEecCCCCCCCc
Q 021363 13 KMEECKETVVYMWGYL---P-GTSPEKSPILSPIPARLCGGDSWKDVCGGG----CGFALATSESGKLITWGSADDEGQS 84 (313)
Q Consensus 13 ~~~l~~~g~vy~wG~n---~-G~lg~~~~~~~p~pv~~~~~~~i~~i~~~g----~~h~~~lt~~G~vy~wG~n~~~Gql 84 (313)
-++.|+.|++|..-.. . +..+.+.... ..+++..+.+|+.+.+.. ..+.+++|.+|.+..--.. ++-..
T Consensus 551 LllfTs~Grv~~l~v~~iP~~~~~~~G~~i~--~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~-~~~~~ 627 (805)
T PRK05560 551 LLFFTNRGRVYRLKVYEIPEASRTARGRPIV--NLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLS-EFSNI 627 (805)
T ss_pred EEEEecCCeEEEEEhhhCcCCCcCCCCeEHH--HhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhH-Hhhhc
Confidence 5667778888888664 1 1111111110 112345567777776633 1257888999987765443 22111
Q ss_pred cccCCCCCCCCcccCCCCCCcEEEEee--cCceeEEEecCCcEEEecCCC
Q 021363 85 YLTSGKHGETPEPFPLPTEASVVKAAA--GWAHCVSVTEAGEVYTWGWRE 132 (313)
Q Consensus 85 g~~~~~~~~~p~~i~~~~~~~i~~Is~--G~~hs~~lt~~G~vy~wG~n~ 132 (313)
..+ -...+.+..+..++.+.. ..++.+++|++|++|.+-...
T Consensus 628 ~r~------G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~e 671 (805)
T PRK05560 628 RSN------GIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESD 671 (805)
T ss_pred ccC------CceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhh
Confidence 000 011122223344444333 356789999999999875444
No 53
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=29.39 E-value=4.1e+02 Score=23.67 Aligned_cols=68 Identities=16% Similarity=0.294 Sum_probs=39.8
Q ss_pred CceEEeec-CCceEEEEeCCCCEEEecCCCCCCCccccCCCCCCCCcccCCCCCCcEEEEeec--CceeEEEecCCcEEE
Q 021363 51 SWKDVCGG-GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG--WAHCVSVTEAGEVYT 127 (313)
Q Consensus 51 ~i~~i~~~-g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~~~~~~p~~i~~~~~~~i~~Is~G--~~hs~~lt~~G~vy~ 127 (313)
+|-.|+.- -..+.+.-+.+|+|+.|-... . ++ ....+|.. +..|.+++-. ....++.+..|..|+
T Consensus 126 pVn~vvlhpnQteLis~dqsg~irvWDl~~-~-~c-----~~~liPe~-----~~~i~sl~v~~dgsml~a~nnkG~cyv 193 (311)
T KOG0315|consen 126 PVNTVVLHPNQTELISGDQSGNIRVWDLGE-N-SC-----THELIPED-----DTSIQSLTVMPDGSMLAAANNKGNCYV 193 (311)
T ss_pred CcceEEecCCcceEEeecCCCcEEEEEccC-C-cc-----ccccCCCC-----CcceeeEEEcCCCcEEEEecCCccEEE
Confidence 44455431 222556667789999997652 1 11 11222322 2456666555 566678889999999
Q ss_pred ecC
Q 021363 128 WGW 130 (313)
Q Consensus 128 wG~ 130 (313)
|-.
T Consensus 194 W~l 196 (311)
T KOG0315|consen 194 WRL 196 (311)
T ss_pred EEc
Confidence 964
No 54
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=28.83 E-value=3.1e+02 Score=25.23 Aligned_cols=56 Identities=13% Similarity=0.153 Sum_probs=29.4
Q ss_pred ceEEEEeCCCCEEEecCCCCCCCccccCCCCCCCCcccCCCCCCcEEEEeecCceeEEEecCCcEEEe
Q 021363 61 GFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTW 128 (313)
Q Consensus 61 ~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~~~~~~p~~i~~~~~~~i~~Is~G~~hs~~lt~~G~vy~w 128 (313)
++.++.+.+|.||++-.. .|++-.. .++....-...-+.-+++.++.+.+|+||+|
T Consensus 321 ~~l~~~~~~G~l~~~d~~--tG~~~~~----------~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 321 GYLVVGDFEGYLHWLSRE--DGSFVAR----------LKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEeCCCEEEEEECC--CCCEEEE----------EEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 366667778888888654 2443110 1110000001111223568888899999986
No 55
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=28.74 E-value=67 Score=18.98 Aligned_cols=20 Identities=25% Similarity=0.029 Sum_probs=13.3
Q ss_pred EEEeCCceEEEEecCCceee
Q 021363 293 EIACGGRHSAVVTDMSYPIA 312 (313)
Q Consensus 293 ~I~~G~~~s~alt~~G~vya 312 (313)
.++..+.+.++.+.+|+|||
T Consensus 16 ~~~v~~g~vyv~~~dg~l~a 35 (40)
T PF13570_consen 16 SPAVAGGRVYVGTGDGNLYA 35 (40)
T ss_dssp --EECTSEEEEE-TTSEEEE
T ss_pred CCEEECCEEEEEcCCCEEEE
Confidence 34556678888888888887
No 56
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=28.26 E-value=2.8e+02 Score=26.08 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=16.5
Q ss_pred CcEEEEeeCCCeEEEEeCCCCEEEEe
Q 021363 212 VKITKVAAGGRHTLILSDMGQVWGWG 237 (313)
Q Consensus 212 ~~i~~I~~G~~h~~al~~~G~vy~wG 237 (313)
..+.+|..=....+|++..|+||++-
T Consensus 200 ~~~~DIi~~kGkfYAvD~~G~l~~i~ 225 (373)
T PLN03215 200 YHFSDIIVHKGQTYALDSIGIVYWIN 225 (373)
T ss_pred ceeeEEEEECCEEEEEcCCCeEEEEe
Confidence 35666666666666666666666664
No 57
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=28.22 E-value=5.5e+02 Score=24.73 Aligned_cols=66 Identities=17% Similarity=0.188 Sum_probs=41.1
Q ss_pred eEEEEeCCCCEEEecCCCCCCCccccCCCCCCCCcccCCCCCCcEEEEeec--CceeEEEecCCcEEEecC
Q 021363 62 FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG--WAHCVSVTEAGEVYTWGW 130 (313)
Q Consensus 62 h~~~lt~~G~vy~wG~n~~~Gqlg~~~~~~~~~p~~i~~~~~~~i~~Is~G--~~hs~~lt~~G~vy~wG~ 130 (313)
+++++-.||-+|.-|.- .|++-.-+-+....-...+. ...+|+.|+.+ +++.+.-.+|+.|+.|--
T Consensus 351 ts~~fHpDgLifgtgt~--d~~vkiwdlks~~~~a~Fpg-ht~~vk~i~FsENGY~Lat~add~~V~lwDL 418 (506)
T KOG0289|consen 351 TSAAFHPDGLIFGTGTP--DGVVKIWDLKSQTNVAKFPG-HTGPVKAISFSENGYWLATAADDGSVKLWDL 418 (506)
T ss_pred EEeeEcCCceEEeccCC--CceEEEEEcCCccccccCCC-CCCceeEEEeccCceEEEEEecCCeEEEEEe
Confidence 57777788888888875 36664432222221111111 24678888887 566666678899999964
No 58
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=27.97 E-value=3.5e+02 Score=26.64 Aligned_cols=58 Identities=17% Similarity=0.183 Sum_probs=29.5
Q ss_pred eCCcEEEecCC-C-CCCCCCCCCceeeEeeecCCCCceEEeecCCce-EEEEeC----CCCEEEecCCCCCCCc
Q 021363 18 KETVVYMWGYL-P-GTSPEKSPILSPIPARLCGGDSWKDVCGGGCGF-ALATSE----SGKLITWGSADDEGQS 84 (313)
Q Consensus 18 ~~g~vy~wG~n-~-G~lg~~~~~~~p~pv~~~~~~~i~~i~~~g~~h-~~~lt~----~G~vy~wG~n~~~Gql 84 (313)
..|+|.+||.- . -.| ...++++ ..+|++|+=...+- .+++-+ -|++|.|-+..+.|.+
T Consensus 79 ~sG~vRIWdtt~~~hiL--------Knef~v~-aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei 143 (603)
T KOG0318|consen 79 VSGKVRIWDTTQKEHIL--------KNEFQVL-AGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEI 143 (603)
T ss_pred CcCcEEEEeccCcceee--------eeeeeec-ccccccceeCCCCcEEEEEecCccceeEEEEecCCCcccee
Confidence 46899999883 1 111 1111111 23566664322222 333322 3779999776566665
No 59
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=25.72 E-value=4.5e+02 Score=27.29 Aligned_cols=120 Identities=18% Similarity=0.094 Sum_probs=64.4
Q ss_pred cccceeeeeCCcEEEecCCCCCCCCCCCCceee--EeeecCCCCceEEeecCCc-eEEEEeCCCCEEEecCCCCCCCccc
Q 021363 10 ENEKMEECKETVVYMWGYLPGTSPEKSPILSPI--PARLCGGDSWKDVCGGGCG-FALATSESGKLITWGSADDEGQSYL 86 (313)
Q Consensus 10 ~~~~~~l~~~g~vy~wG~n~G~lg~~~~~~~p~--pv~~~~~~~i~~i~~~g~~-h~~~lt~~G~vy~wG~n~~~Gqlg~ 86 (313)
..+-+++|++|.+|.+-.++=-.|. ..-.|. .+.+..+..|+.+...... +.+++|+.|..+..-.. ++-....
T Consensus 536 ~d~LllfTs~Gr~yrf~v~eIP~GR--~aGgpV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~ls-e~~~~~R 612 (735)
T TIGR01062 536 NQKVVFIDSTGRSYALDPDNLPSAR--GQGEPLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGFLCNFN-DLIARNK 612 (735)
T ss_pred CCEEEEEECCCeEEEEEhHhcCcCc--cCCceeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEEhH-hccccCc
Confidence 3457888899999999775101122 122222 2334567788877764433 57888999977766544 2221100
Q ss_pred cCCCCCCCCcccCCCCCCcEEE--EeecC-ceeEEEecCCcEEEecCCCCCCCCc
Q 021363 87 TSGKHGETPEPFPLPTEASVVK--AAAGW-AHCVSVTEAGEVYTWGWRECVPSAK 138 (313)
Q Consensus 87 ~~~~~~~~p~~i~~~~~~~i~~--Is~G~-~hs~~lt~~G~vy~wG~n~~gqlG~ 138 (313)
+ ... .+.+..+..++. ...+. ++.+++|++|++..+--++.-++|+
T Consensus 613 a-GKg-----vi~Lk~~d~lv~v~~v~~~dd~V~liT~~GrlLrf~v~EIp~~gR 661 (735)
T TIGR01062 613 A-GKA-----LINLPENASVIAPLPVNGDSDMIAAITEAGRMLVFPIDDLPELSK 661 (735)
T ss_pred C-CeE-----EEEeCCCCEEEEEEEEcCCCCEEEEEeCCCcEEEEEHHHCCccCC
Confidence 0 000 000111222221 22334 3688899999999887666555543
No 60
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=23.76 E-value=95 Score=29.45 Aligned_cols=50 Identities=26% Similarity=0.507 Sum_probs=30.4
Q ss_pred eeCCcEEEecCCCCCCCCCCCCceeeEeeecCCCCceEEeecCCc----eEEE-EeCCCCEEEecCC
Q 021363 17 CKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCG----FALA-TSESGKLITWGSA 78 (313)
Q Consensus 17 ~~~g~vy~wG~n~G~lg~~~~~~~p~pv~~~~~~~i~~i~~~g~~----h~~~-lt~~G~vy~wG~n 78 (313)
.+|++||+|-.-.| .|+.++.+.. +.|-|..++ +.+| -.+||+|--||..
T Consensus 459 SED~kvyIWhr~sg-----------kll~~LsGHs-~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 459 SEDSKVYIWHRISG-----------KLLAVLSGHS-KTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CCCceEEEEEccCC-----------ceeEeecCCc-ceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 37899999976332 3444443222 333333444 4455 4678999999987
No 61
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=23.44 E-value=7.7e+02 Score=25.50 Aligned_cols=17 Identities=12% Similarity=0.645 Sum_probs=14.6
Q ss_pred cceeeeeCCcEEEecCC
Q 021363 12 EKMEECKETVVYMWGYL 28 (313)
Q Consensus 12 ~~~~l~~~g~vy~wG~n 28 (313)
+++....++.+|+|-.+
T Consensus 34 rNLl~~~d~~L~vWd~~ 50 (717)
T PF10168_consen 34 RNLLACRDGDLFVWDSS 50 (717)
T ss_pred eeeEEEeCCEEEEEECC
Confidence 67888889999999776
No 62
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=23.12 E-value=6.2e+02 Score=23.59 Aligned_cols=85 Identities=20% Similarity=0.257 Sum_probs=39.5
Q ss_pred EeeecCCCCceEEeecCCceEEEEeCCCCEEEecCCCCCCCccccCCCCCCCCcccCCC------CCCcEEEEeec---C
Q 021363 43 PARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLP------TEASVVKAAAG---W 113 (313)
Q Consensus 43 pv~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~~~~~~p~~i~~~------~~~~i~~Is~G---~ 113 (313)
.+.......++.|..+..-+.++++.||+...-++. ..+++-.-+...-..-..++.. ...++..|.+. .
T Consensus 62 viD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~-~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~ 140 (369)
T PF02239_consen 62 VIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANY-EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRP 140 (369)
T ss_dssp EEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEE-ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSS
T ss_pred EEECCcccEEEEEecCCCcceEEEcCCCCEEEEEec-CCCceeEeccccccceeecccccccccccCCCceeEEecCCCC
Confidence 444444556778877444479999999996665554 3344432221111111111110 23456666543 3
Q ss_pred ceeEEEecCCcEEEe
Q 021363 114 AHCVSVTEAGEVYTW 128 (313)
Q Consensus 114 ~hs~~lt~~G~vy~w 128 (313)
.+.+.+.+.++||.-
T Consensus 141 ~fVv~lkd~~~I~vV 155 (369)
T PF02239_consen 141 EFVVNLKDTGEIWVV 155 (369)
T ss_dssp EEEEEETTTTEEEEE
T ss_pred EEEEEEccCCeEEEE
Confidence 355666677888764
No 63
>PF13854 Kelch_5: Kelch motif
Probab=22.94 E-value=85 Score=18.89 Aligned_cols=19 Identities=11% Similarity=0.207 Sum_probs=13.4
Q ss_pred CCeEEEEeCCCCEEEEeCCC
Q 021363 221 GRHTLILSDMGQVWGWGYGG 240 (313)
Q Consensus 221 ~~h~~al~~~G~vy~wG~n~ 240 (313)
..|++++.. +++|.+|=-.
T Consensus 6 ~~hs~~~~~-~~iyi~GG~~ 24 (42)
T PF13854_consen 6 YGHSAVVVG-NNIYIFGGYS 24 (42)
T ss_pred cceEEEEEC-CEEEEEcCcc
Confidence 357777654 7899998544
No 64
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=22.41 E-value=8.9e+02 Score=25.18 Aligned_cols=245 Identities=11% Similarity=0.010 Sum_probs=0.0
Q ss_pred ccccceeeeeCCcEEEecCC--CCCCCCCCCCceeeEeeecC---CCCceEEeecCCceEEEEeCC-CCEEEecCCCCCC
Q 021363 9 EENEKMEECKETVVYMWGYL--PGTSPEKSPILSPIPARLCG---GDSWKDVCGGGCGFALATSES-GKLITWGSADDEG 82 (313)
Q Consensus 9 ~~~~~~~l~~~g~vy~wG~n--~G~lg~~~~~~~p~pv~~~~---~~~i~~i~~~g~~h~~~lt~~-G~vy~wG~n~~~G 82 (313)
+++...-+.++|-+..|..+ ++++-......+-....... ..++-.+.- -..--..+.++ -+|-+.-.+...-
T Consensus 200 ~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~-~k~~k~~ln~~~~kvtaa~fH~~t~ 278 (893)
T KOG0291|consen 200 NSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFW-YKTKKHYLNQNSSKVTAAAFHKGTN 278 (893)
T ss_pred CcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEE-EEEEeeeecccccceeeeeccCCce
Q ss_pred CccccCCCCCCCCcccCCCCCCcEEEEeecCceeEEEecCCcEEEecCCCCCCCCcccccCCCCCccccCCCCCCCCCCc
Q 021363 83 QSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPT 162 (313)
Q Consensus 83 qlg~~~~~~~~~p~~i~~~~~~~i~~Is~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~g~~~~~~~ 162 (313)
.|-.+-..-....-.++-+....-.+|+--.=.++++.+.|.=.++|+...|||.- -....-+...
T Consensus 279 ~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlV--------------weWqsEsYVl 344 (893)
T KOG0291|consen 279 LLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLV--------------WEWQSESYVL 344 (893)
T ss_pred EEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEE--------------EEeeccceee
Q ss_pred cCCCCCCccccceeeeceeeeccCCCCCCCCCCCcceeecceeeecC-CCCcEEEEeeCCCeEEEEeCCCCEEEEeCCCC
Q 021363 163 EQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLN-PGVKITKVAAGGRHTLILSDMGQVWGWGYGGE 241 (313)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~-~~~~i~~I~~G~~h~~al~~~G~vy~wG~n~~ 241 (313)
++-..........-..++++...+....+...=+....+=....... .+...++++.-.+..+...=||+|-+|=...|
T Consensus 345 KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 345 KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Q ss_pred cccCCCCCCCCcccCeeecccccccCCCCCcceeeccccccCCCCCCccEEEEEeCCceEEEEecCCceee
Q 021363 242 GQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDMSYPIA 312 (313)
Q Consensus 242 gqlG~g~~~~~~~~p~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~I~~G~~~s~alt~~G~vya 312 (313)
-.. .....|.+++ ..+++++..|+|.+
T Consensus 425 rNf------RTft~P~p~Q--------------------------------------fscvavD~sGelV~ 451 (893)
T KOG0291|consen 425 RNF------RTFTSPEPIQ--------------------------------------FSCVAVDPSGELVC 451 (893)
T ss_pred cee------eeecCCCcee--------------------------------------eeEEEEcCCCCEEE
No 65
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=22.23 E-value=7.7e+02 Score=26.06 Aligned_cols=67 Identities=22% Similarity=0.240 Sum_probs=40.3
Q ss_pred eEEE-EeCCCCEEEe-cCCCCCCCccccCC--CCCCCCcccCCCCCCcEEEEeecCceeEEEecCCcEEEe
Q 021363 62 FALA-TSESGKLITW-GSADDEGQSYLTSG--KHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTW 128 (313)
Q Consensus 62 h~~~-lt~~G~vy~w-G~n~~~Gqlg~~~~--~~~~~p~~i~~~~~~~i~~Is~G~~hs~~lt~~G~vy~w 128 (313)
|.+| |+..|-+|+. -.....+++..... .....-..+.++....|+.|+|+....++.|+.|-+.+|
T Consensus 479 y~lA~ls~~g~llAsp~s~sk~~sil~~~h~~w~s~seWtm~lP~~E~~~~V~~t~~~Vav~TS~~~lRvF 549 (933)
T KOG1274|consen 479 YELADLSEKGTLLASPESESKLGSILYRAHFSWDSHSEWTMILPLQESIEAVAATSGWVAVATSLGYLRVF 549 (933)
T ss_pred ceeeeccccceEEecccccCCcceEEEEcccCcccccceeeecCCCCceeEEEccCcEEEEEeccceEEEE
Confidence 4444 6677777776 22112344332211 112223334455558899999999999999999976654
No 66
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=22.12 E-value=7.2e+02 Score=24.01 Aligned_cols=100 Identities=20% Similarity=0.187 Sum_probs=47.5
Q ss_pred ceeee--eCCcEEEecCCCCCCCCCCCCceeeEeeecC--CCCceEEeecCCc--eEEE--EeCCCCEEEecCCCCCCCc
Q 021363 13 KMEEC--KETVVYMWGYLPGTSPEKSPILSPIPARLCG--GDSWKDVCGGGCG--FALA--TSESGKLITWGSADDEGQS 84 (313)
Q Consensus 13 ~~~l~--~~g~vy~wG~n~G~lg~~~~~~~p~pv~~~~--~~~i~~i~~~g~~--h~~~--lt~~G~vy~wG~n~~~Gql 84 (313)
+++++ +||.|..|---+=...+. .-.|.|..... ..+|.++.. |.+ -+.+ .+.|..+-.|-.. .|.|
T Consensus 136 s~iiTgskDg~V~vW~l~~lv~a~~--~~~~~p~~~f~~HtlsITDl~i-g~Gg~~~rl~TaS~D~t~k~wdlS--~g~L 210 (476)
T KOG0646|consen 136 SHIITGSKDGAVLVWLLTDLVSADN--DHSVKPLHIFSDHTLSITDLQI-GSGGTNARLYTASEDRTIKLWDLS--LGVL 210 (476)
T ss_pred cEEEecCCCccEEEEEEEeeccccc--CCCccceeeeccCcceeEEEEe-cCCCccceEEEecCCceEEEEEec--ccee
Confidence 44554 466666664421111111 12555655554 455666655 433 1112 3345555556553 2333
Q ss_pred cccCCCCCCCCcccCCCCCCcEEEEeecCceeEEEecCCcEEE
Q 021363 85 YLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYT 127 (313)
Q Consensus 85 g~~~~~~~~~p~~i~~~~~~~i~~Is~G~~hs~~lt~~G~vy~ 127 (313)
...+.++...+-+-+.=+..+.++=+++|.+|.
T Consensus 211 ----------Llti~fp~si~av~lDpae~~~yiGt~~G~I~~ 243 (476)
T KOG0646|consen 211 ----------LLTITFPSSIKAVALDPAERVVYIGTEEGKIFQ 243 (476)
T ss_pred ----------eEEEecCCcceeEEEcccccEEEecCCcceEEe
Confidence 222223322333444455667777777888775
No 67
>PF13938 DUF4213: Domain of unknown function (DUF4213); PDB: 3NPG_A 3L5O_B.
Probab=21.49 E-value=1.3e+02 Score=21.48 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=18.7
Q ss_pred CCCcEEEEeeCCCeEEEEeCCC
Q 021363 210 PGVKITKVAAGGRHTLILSDMG 231 (313)
Q Consensus 210 ~~~~i~~I~~G~~h~~al~~~G 231 (313)
++..|+++..|...+++..++|
T Consensus 10 ~~~~V~~~~iG~~~t~V~~~~G 31 (87)
T PF13938_consen 10 PDIRVEDVCIGLHWTAVELSDG 31 (87)
T ss_dssp GC-EEEEEEEBSSEEEEEETT-
T ss_pred CCCEEEEEEEcCCEEEEEeCCC
Confidence 4679999999999999999998
No 68
>PLN02772 guanylate kinase
Probab=20.67 E-value=3.2e+02 Score=25.93 Aligned_cols=21 Identities=5% Similarity=0.007 Sum_probs=17.0
Q ss_pred CCCeEEEEeCCCCEEEEeCCC
Q 021363 220 GGRHTLILSDMGQVWGWGYGG 240 (313)
Q Consensus 220 G~~h~~al~~~G~vy~wG~n~ 240 (313)
-..|++++-.+.++++.+.+.
T Consensus 76 r~GhSa~v~~~~rilv~~~~~ 96 (398)
T PLN02772 76 CKGYSAVVLNKDRILVIKKGS 96 (398)
T ss_pred CCcceEEEECCceEEEEeCCC
Confidence 357899988888999998654
No 69
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=20.36 E-value=1.6e+02 Score=15.97 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=12.9
Q ss_pred ceeEEEecCCcEEEecC
Q 021363 114 AHCVSVTEAGEVYTWGW 130 (313)
Q Consensus 114 ~hs~~lt~~G~vy~wG~ 130 (313)
-|.++++.+|+||..=+
T Consensus 4 P~gvav~~~g~i~VaD~ 20 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADS 20 (28)
T ss_dssp EEEEEEETTSEEEEEEC
T ss_pred CcEEEEeCCCCEEEEEC
Confidence 36788888999998643
Done!