Query 021363
Match_columns 313
No_of_seqs 135 out of 1475
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 03:04:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021363.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021363hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4d9s_A UVB-resistance protein 100.0 2.3E-46 8E-51 352.4 25.2 292 13-312 28-352 (406)
2 3kci_A Probable E3 ubiquitin-p 100.0 7E-46 2.4E-50 347.3 17.6 249 5-312 5-288 (389)
3 3kci_A Probable E3 ubiquitin-p 100.0 4.4E-45 1.5E-49 341.8 21.1 241 13-312 65-340 (389)
4 1a12_A RCC1, regulator of chro 100.0 1.1E-43 3.8E-48 334.8 23.9 267 13-312 71-360 (413)
5 1a12_A RCC1, regulator of chro 100.0 2.4E-43 8.1E-48 332.5 24.3 242 10-312 17-309 (413)
6 3mvd_K Regulator of chromosome 100.0 5.6E-43 1.9E-47 330.9 26.6 238 13-312 36-317 (423)
7 3mvd_K Regulator of chromosome 100.0 1.2E-42 4E-47 328.7 27.2 267 13-312 87-369 (423)
8 3of7_A Regulator of chromosome 100.0 1.6E-42 5.5E-47 332.3 23.9 244 13-312 22-336 (473)
9 3of7_A Regulator of chromosome 100.0 3.1E-42 1E-46 330.4 23.1 268 13-312 79-400 (473)
10 4d9s_A UVB-resistance protein 100.0 5.1E-40 1.7E-44 309.2 22.9 215 13-286 133-356 (406)
11 3qhy_B Beta-lactamase inhibito 100.0 1.7E-37 6E-42 278.1 21.0 235 13-312 36-277 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 6E-36 2.1E-40 268.1 17.0 227 20-312 2-241 (282)
13 4gbf_A Phikz131; 7-bladed beta 95.6 0.02 6.9E-07 48.9 6.2 70 50-134 309-378 (400)
14 4gbf_A Phikz131; 7-bladed beta 94.0 0.077 2.6E-06 45.3 5.6 72 104-244 309-380 (400)
15 3no0_A DNA gyrase subunit A; D 82.8 22 0.00075 30.5 15.0 70 49-129 23-96 (276)
16 3uc1_A DNA gyrase subunit A; D 82.4 25 0.00087 30.9 15.9 69 59-129 52-125 (327)
17 1suu_A DNA gyrase subunit A; t 81.5 26 0.0009 30.5 17.2 115 12-130 10-131 (312)
18 1p22_A F-BOX/WD-repeat protein 70.3 59 0.002 28.9 22.3 67 49-129 173-239 (435)
19 3uc1_A DNA gyrase subunit A; D 57.1 1E+02 0.0034 27.0 19.8 110 13-131 56-175 (327)
20 1gxr_A ESG1, transducin-like e 56.8 83 0.0028 26.0 18.6 112 11-130 12-126 (337)
21 1wp5_A Topoisomerase IV; broke 55.4 1.1E+02 0.0036 26.8 16.9 69 59-129 49-122 (323)
22 1p22_A F-BOX/WD-repeat protein 55.2 1.1E+02 0.0038 27.0 22.1 70 49-129 213-282 (435)
23 1zvt_A Topoisomerase IV subuni 54.7 95 0.0033 26.0 12.1 103 13-129 5-111 (256)
24 2ovr_B FBW7, F-BOX/WD repeat p 52.4 1.2E+02 0.0042 26.7 21.3 66 50-129 160-225 (445)
25 1k3i_A Galactose oxidase precu 50.7 74 0.0025 30.5 9.8 18 221-238 288-305 (656)
26 3l6v_A GYRA, DNA gyrase subuni 50.3 1.4E+02 0.0048 26.6 16.1 84 44-129 40-129 (370)
27 3odt_A Protein DOA1; ubiquitin 48.5 1.1E+02 0.0037 24.9 16.6 68 49-129 184-252 (313)
28 1zi0_A DNA gyrase subunit A; b 46.7 1.4E+02 0.0048 25.7 16.6 68 59-128 52-124 (307)
29 2zwa_A Leucine carboxyl methyl 44.6 2.3E+02 0.0077 27.5 12.5 65 61-131 442-509 (695)
30 1k3i_A Galactose oxidase precu 44.2 49 0.0017 31.8 7.3 58 63-130 247-305 (656)
31 1zvu_A Topoisomerase IV subuni 40.4 2.8E+02 0.0094 27.2 15.1 76 49-128 502-580 (716)
32 1suu_A DNA gyrase subunit A; t 39.9 1.8E+02 0.0062 25.0 20.5 114 11-133 59-182 (312)
33 3q7x_A De novo designed beta-t 38.3 98 0.0034 23.2 6.7 75 37-127 38-113 (132)
34 4aez_A CDC20, WD repeat-contai 37.7 2E+02 0.0069 24.9 17.9 98 13-131 106-204 (401)
35 3lrv_A PRE-mRNA-splicing facto 36.7 1.9E+02 0.0066 24.3 9.5 27 104-130 126-156 (343)
36 3no0_A DNA gyrase subunit A; D 34.6 2.1E+02 0.0071 24.1 18.1 103 12-133 37-147 (276)
37 4aow_A Guanine nucleotide-bind 33.0 2E+02 0.007 23.6 10.5 75 50-128 257-333 (340)
38 2ovr_B FBW7, F-BOX/WD repeat p 30.7 2.7E+02 0.0094 24.3 21.9 27 213-239 321-347 (445)
39 3odt_A Protein DOA1; ubiquitin 30.1 2.2E+02 0.0075 23.0 17.8 58 62-129 73-130 (313)
40 3snv_A Symfoil-4T/permutation 28.9 1.9E+02 0.0065 21.9 9.1 74 37-127 41-116 (143)
41 2zwa_A Leucine carboxyl methyl 28.7 2.9E+02 0.01 26.6 10.1 19 60-78 491-509 (695)
42 1xip_A Nucleoporin NUP159; bet 26.0 1.5E+02 0.0052 26.5 6.9 26 106-132 90-115 (388)
43 1q7f_A NHL, brain tumor CG1071 24.7 2.8E+02 0.0094 22.4 13.9 18 223-240 210-227 (286)
44 3sfz_A APAF-1, apoptotic pepti 24.1 2E+02 0.0069 29.4 8.4 100 17-128 1146-1245(1249)
45 3v7d_B Cell division control p 23.4 3.7E+02 0.013 23.4 17.6 69 50-131 311-380 (464)
46 1r5m_A SIR4-interacting protei 20.6 3.9E+02 0.013 22.6 14.7 140 9-236 160-315 (425)
47 1gxr_A ESG1, transducin-like e 20.5 3.5E+02 0.012 22.0 17.4 66 51-130 226-294 (337)
48 3dsm_A Uncharacterized protein 20.2 3.9E+02 0.013 22.4 11.8 18 223-240 175-192 (328)
No 1
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=2.3e-46 Score=352.38 Aligned_cols=292 Identities=24% Similarity=0.328 Sum_probs=229.8
Q ss_pred ceeeeeCCcEEEecCC-CCCCCCCCCCceeeEeeec--CCCCceEEeecCCceEEEEeCCC-CEEEecCCCCCCCccccC
Q 021363 13 KMEECKETVVYMWGYL-PGTSPEKSPILSPIPARLC--GGDSWKDVCGGGCGFALATSESG-KLITWGSADDEGQSYLTS 88 (313)
Q Consensus 13 ~~~l~~~g~vy~wG~n-~G~lg~~~~~~~p~pv~~~--~~~~i~~i~~~g~~h~~~lt~~G-~vy~wG~n~~~Gqlg~~~ 88 (313)
.++|+++|+||+||.| .||||++.....+.|.++. .+.+|++|++ |..|+++|+++| +||+||.| ++||||.++
T Consensus 28 s~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~-G~~ht~al~~~gg~v~~wG~n-~~GqLG~g~ 105 (406)
T 4d9s_A 28 SVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTC-GADHTVAYSQSGMEVYSWGWG-DFGRLGHGN 105 (406)
T ss_dssp EEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEE-CSSEEEEEETTTTEEEEEECC-GGGTTCSSS
T ss_pred EEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEe-CcceEEEEECCCCEEEEEcCC-CCcCCCCCC
Confidence 6889999999999999 8999998776666666554 5678999999 778999999885 99999999 899999988
Q ss_pred CCCCCCCcccCCCCCCcEEEEeecCceeEEEecCCcEEEecCCCCCCCCcccccCCCCCccccCCCCCCCCCCccCCCCC
Q 021363 89 GKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPS 168 (313)
Q Consensus 89 ~~~~~~p~~i~~~~~~~i~~Is~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 168 (313)
......|.+++.+...+|++|+||.+|+++|+++|+||+||.|.+||||......... +..... .......++...
T Consensus 106 ~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~---p~~v~~-~~~~~i~~va~G 181 (406)
T 4d9s_A 106 SSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLV---PQKIQA-FEGIRIKMVAAG 181 (406)
T ss_dssp CCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEE---EEECGG-GTTCCEEEEEEC
T ss_pred CCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCccc---ceEecc-cCCCcEEEEecC
Confidence 8777788888888888999999999999999999999999999999999754321100 000000 000000111111
Q ss_pred Cccccceeeeceee-eccCCCCCCCCCCCcceeecceeeecCCCCcEEEEeeCCCeEEEEeCCCCEEEEeCCCCcccCCC
Q 021363 169 DKRAGEEVVKRRKT-SSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLG 247 (313)
Q Consensus 169 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~h~~al~~~G~vy~wG~n~~gqlG~g 247 (313)
......+++...+ .|+.+.......++......|+++..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+
T Consensus 182 -~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g 260 (406)
T 4d9s_A 182 -AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHG 260 (406)
T ss_dssp -SSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSS
T ss_pred -CCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCC
Confidence 1122234555544 56666667777777778888999988888899999999999999999999999999999999998
Q ss_pred CCCCCcccCeeecccc-----cccCCCCCcceeec-cccccCCCCC----------------------CccEEEEEeCCc
Q 021363 248 SRIKMVPTPHLIPCLE-----HAASGKDRPLLVRQ-GSVNSSGKAG----------------------RSYVKEIACGGR 299 (313)
Q Consensus 248 ~~~~~~~~p~~i~~~~-----~~~~g~~~~~~~~~-~~~~~~~~~~----------------------~~~i~~I~~G~~ 299 (313)
.. .....|++++.+. .++||..|+++|.. |+++.|+... ..+|++|+||.+
T Consensus 261 ~~-~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G~~ 339 (406)
T 4d9s_A 261 DL-EDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWR 339 (406)
T ss_dssp SC-CCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEECSS
T ss_pred CC-cCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeCCC
Confidence 75 5667788887544 48999999999987 8887766321 157999999999
Q ss_pred eEEEEecCCceee
Q 021363 300 HSAVVTDMSYPIA 312 (313)
Q Consensus 300 ~s~alt~~G~vya 312 (313)
|++||+++|+||+
T Consensus 340 hs~alt~~G~v~~ 352 (406)
T 4d9s_A 340 HTLAVTERNNVFA 352 (406)
T ss_dssp EEEEEETTSCEEE
T ss_pred eEEEEeCCCCEEE
Confidence 9999999999997
No 2
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=7e-46 Score=347.28 Aligned_cols=249 Identities=23% Similarity=0.355 Sum_probs=197.0
Q ss_pred ccccccccceeeeeCCcEEEecCC-CCCCCCCCCC--ceeeEeeecCCCCceEEeecCCceEEEEeCCCCEEEecCCCCC
Q 021363 5 GSKREENEKMEECKETVVYMWGYL-PGTSPEKSPI--LSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDE 81 (313)
Q Consensus 5 ~~~~~~~~~~~l~~~g~vy~wG~n-~G~lg~~~~~--~~p~pv~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~ 81 (313)
..-+++.+..+++++|+||+||.| .||||..... ..|.|++.+...++++|++ |..|+++|+++|+||+||.| ++
T Consensus 5 ~~~~~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~-G~~~~~~l~~~G~v~~wG~n-~~ 82 (389)
T 3kci_A 5 HHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG-GEQTLFAVTADGKLYATGYG-AG 82 (389)
T ss_dssp ----------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEE-ETTEEEEEETTSCEEEEECC-GG
T ss_pred ccccCcccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEe-CCCeEEEEcCCCcEEEEECC-CC
Confidence 344566778999999999999999 8999976554 4556666666778999998 77899999999999999999 89
Q ss_pred CCccccCCCCCCCCcccCCCCCC--cEEEEeecCceeEEEecCCcEEEecCCCCCCCCcccccCCCCCccccCCCCCCCC
Q 021363 82 GQSYLTSGKHGETPEPFPLPTEA--SVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSA 159 (313)
Q Consensus 82 Gqlg~~~~~~~~~p~~i~~~~~~--~i~~Is~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~g~~~~ 159 (313)
||||.++......|++++.+... ++++|+||.+|+++|+++|+||+||.|.+||||.
T Consensus 83 GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~--------------------- 141 (389)
T 3kci_A 83 GRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGH--------------------- 141 (389)
T ss_dssp GTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCS---------------------
T ss_pred CCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCC---------------------
Confidence 99999877776778877766554 4589999999999999999999999999999995
Q ss_pred CCccCCCCCCccccceeeeceeeeccCCCCCCCCCCCcceeecceeeecCCCCcEEEEeeCCCeEEEEeCCCCEEEEeCC
Q 021363 160 LPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYG 239 (313)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~h~~al~~~G~vy~wG~n 239 (313)
++......|+++..+.+.+|++|+||.+|++||+++|+||+||.|
T Consensus 142 -----------------------------------g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n 186 (389)
T 3kci_A 142 -----------------------------------GNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKG 186 (389)
T ss_dssp -----------------------------------SSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred -----------------------------------CCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCC
Confidence 223345678888888888999999999999999999999999999
Q ss_pred CCcccCCCCCCCCcccCeeecccc-----cccCCC--CCcceeec-cccccCCCC----------------------CCc
Q 021363 240 GEGQLGLGSRIKMVPTPHLIPCLE-----HAASGK--DRPLLVRQ-GSVNSSGKA----------------------GRS 289 (313)
Q Consensus 240 ~~gqlG~g~~~~~~~~p~~i~~~~-----~~~~g~--~~~~~~~~-~~~~~~~~~----------------------~~~ 289 (313)
.+||||.+.. .....|++++.+. .++||. .|+++|.. |+++.|+.. .+.
T Consensus 187 ~~GqLG~~~~-~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~ 265 (389)
T 3kci_A 187 RYGRLGHSDS-EDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGL 265 (389)
T ss_dssp GGGTTCSSSC-CCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTS
T ss_pred CCCCcCCCCC-cccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCC
Confidence 9999999885 5667888887654 477874 78888877 888766532 124
Q ss_pred cEEEEEeCCceEEEEecCCceee
Q 021363 290 YVKEIACGGRHSAVVTDMSYPIA 312 (313)
Q Consensus 290 ~i~~I~~G~~~s~alt~~G~vya 312 (313)
+|++|+||.+|++||+++|+||+
T Consensus 266 ~v~~v~~G~~hs~alt~~G~v~~ 288 (389)
T 3kci_A 266 GVVKVECGSQFSVALTKSGAVYT 288 (389)
T ss_dssp CEEEEEEETTEEEEEETTSCEEE
T ss_pred cEEEEeCCCCEEEEEeCCCeEEE
Confidence 69999999999999999999997
No 3
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=4.4e-45 Score=341.83 Aligned_cols=241 Identities=27% Similarity=0.370 Sum_probs=205.6
Q ss_pred ceeeeeCCcEEEecCC-CCCCCCCCCCceeeEe--eecCCCC--ceEEeecCCceEEEEeCCCCEEEecCCCCCCCcccc
Q 021363 13 KMEECKETVVYMWGYL-PGTSPEKSPILSPIPA--RLCGGDS--WKDVCGGGCGFALATSESGKLITWGSADDEGQSYLT 87 (313)
Q Consensus 13 ~~~l~~~g~vy~wG~n-~G~lg~~~~~~~p~pv--~~~~~~~--i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~ 87 (313)
.++|+++|+||+||.| .||||.+.......|. +.+...+ +++|++ |..|+++|+++|+||+||.| ++||||.+
T Consensus 65 ~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~-G~~h~~al~~~G~v~~wG~n-~~GqLG~g 142 (389)
T 3kci_A 65 LFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNS-GGKHCLALSSEGEVYSWGEA-EDGKLGHG 142 (389)
T ss_dssp EEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECT-TCSEEEEEETTSCEEEEECC-GGGTTCSS
T ss_pred EEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECc-CCCeEEEEcCCCCEEEEeCC-CCCcCCCC
Confidence 5789999999999999 8999988665444444 4444443 367777 77899999999999999999 89999999
Q ss_pred CCCCCCCCcccCCCCCCcEEEEeecCceeEEEecCCcEEEecCCCCCCCCcccccCCCCCccccCCCCCCCCCCccCCCC
Q 021363 88 SGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPP 167 (313)
Q Consensus 88 ~~~~~~~p~~i~~~~~~~i~~Is~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 167 (313)
+......|++++.+...+|++|+||.+|+++|+++|+||+||.|.+||||.
T Consensus 143 ~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~----------------------------- 193 (389)
T 3kci_A 143 NRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGH----------------------------- 193 (389)
T ss_dssp SCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCS-----------------------------
T ss_pred CCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCC-----------------------------
Confidence 887777888888887889999999999999999999999999999999995
Q ss_pred CCccccceeeeceeeeccCCCCCCCCCCCcceeecceeeecCCCCcEEEEeeCC--CeEEEEeCCCCEEEEeCCCCcccC
Q 021363 168 SDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGG--RHTLILSDMGQVWGWGYGGEGQLG 245 (313)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~--~h~~al~~~G~vy~wG~n~~gqlG 245 (313)
++......|+++..+.+.+|++|+||. +|+++|+++|+||+||.|.+||||
T Consensus 194 ---------------------------~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG 246 (389)
T 3kci_A 194 ---------------------------SDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLG 246 (389)
T ss_dssp ---------------------------SSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTS
T ss_pred ---------------------------CCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCC
Confidence 223345678888888888999999995 899999999999999999999999
Q ss_pred CCCCCCCcccCeeeccc-----ccccCCCCCcceeec-cccccCCCC----------------------CCccEEEEEeC
Q 021363 246 LGSRIKMVPTPHLIPCL-----EHAASGKDRPLLVRQ-GSVNSSGKA----------------------GRSYVKEIACG 297 (313)
Q Consensus 246 ~g~~~~~~~~p~~i~~~-----~~~~~g~~~~~~~~~-~~~~~~~~~----------------------~~~~i~~I~~G 297 (313)
.+.. .....|++|+.+ ..++||..|+++|.. |+++.|+.. ...+|++|+||
T Consensus 247 ~g~~-~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G 325 (389)
T 3kci_A 247 RGGS-DGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG 325 (389)
T ss_dssp SSSC-CCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC
T ss_pred CCCC-CCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec
Confidence 9875 566788888764 348999999999987 888777642 12569999999
Q ss_pred CceEEEEecCCceee
Q 021363 298 GRHSAVVTDMSYPIA 312 (313)
Q Consensus 298 ~~~s~alt~~G~vya 312 (313)
.+|++|++++|+||+
T Consensus 326 ~~h~~al~~~G~v~~ 340 (389)
T 3kci_A 326 SLHCVCCTEDGEVYT 340 (389)
T ss_dssp SSEEEEEETTCCEEE
T ss_pred cCeEEEECCCCCEEE
Confidence 999999999999997
No 4
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=1.1e-43 Score=334.83 Aligned_cols=267 Identities=22% Similarity=0.268 Sum_probs=199.8
Q ss_pred ceeeeeCCcEEEecCC-CCCCCCCCC----CceeeEeeecCCCCceEEeecCCceEEEEeCCCCEEEecC--CCCCCCcc
Q 021363 13 KMEECKETVVYMWGYL-PGTSPEKSP----ILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGS--ADDEGQSY 85 (313)
Q Consensus 13 ~~~l~~~g~vy~wG~n-~G~lg~~~~----~~~p~pv~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~--n~~~Gqlg 85 (313)
.++|+++|+||+||.| .||||.... ...|.++. ...+|++|+| |..|+++|+++|+||+||. | .+||||
T Consensus 71 s~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~--l~~~i~~va~-G~~hs~alt~~G~v~~wG~~~n-~~GqlG 146 (413)
T 1a12_A 71 TVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVE--LQEKVVQVSA-GDSHTAALTDDGRVFLWGSFRD-NNGVIG 146 (413)
T ss_dssp EEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECC--CCSCEEEEEE-CSSEEEEEETTSCEEEEECEEE-TTEEEE
T ss_pred EEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEec--CCCcEEEEec-CCCeEEEEcCCCcEEEeeCCcC-CCCccC
Confidence 6789999999999999 899998764 34455553 3458999999 8899999999999999998 8 799999
Q ss_pred ccCCCCC-CCCcccCCCCCCcEEEEeecCceeEEEecCCcEEEecCCCCCCCCcccccCCCCCcc----ccCCCCCCCCC
Q 021363 86 LTSGKHG-ETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSF----QKDSTGKQSAL 160 (313)
Q Consensus 86 ~~~~~~~-~~p~~i~~~~~~~i~~Is~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~----~~~~~g~~~~~ 160 (313)
.+..... ..|..+ +...+|++|+||.+|+++|+++|+||+||.|.+||||.....+...... ....|. ....
T Consensus 147 ~~~~~~~~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~-~v~~ 223 (413)
T 1a12_A 147 LLEPMKKSMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPK-CVML 223 (413)
T ss_dssp SSBBTBCEEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCE-ECCC
T ss_pred cCCccccccCCEEe--cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCc-eEee
Confidence 8754332 235444 5678999999999999999999999999999999999764332211000 000000 0000
Q ss_pred Cc----cCCCCCCcccc----ceeeeceee-eccCCCCCCCCCCCcceeecceeeecCCC--CcEEEEeeCCCeEEEEeC
Q 021363 161 PT----EQAPPSDKRAG----EEVVKRRKT-SSAREESENPASGDEFFTLSPCLVTLNPG--VKITKVAAGGRHTLILSD 229 (313)
Q Consensus 161 ~~----~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~i~~~~~--~~i~~I~~G~~h~~al~~ 229 (313)
.. .........++ ..+++...+ .|+.+.......++......|+.+..+.+ .+|++|+||.+|+++|++
T Consensus 224 ~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~ 303 (413)
T 1a12_A 224 KSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDS 303 (413)
T ss_dssp BCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEET
T ss_pred ccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeC
Confidence 00 00011111122 224444444 55556666666666667788999887765 679999999999999999
Q ss_pred CCCEEEEeCCCCcccCCCCCCCCcccCeeecccccccCCCCCcceeeccccccCCCCCCccEEEEEeCCceEEEEecCCc
Q 021363 230 MGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDMSY 309 (313)
Q Consensus 230 ~G~vy~wG~n~~gqlG~g~~~~~~~~p~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~I~~G~~~s~alt~~G~ 309 (313)
+|+||+||.|.+||||.+........|++|+.+.. |++|+||.+|++||+++|+
T Consensus 304 ~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~~--------------------------v~~v~~G~~hs~alt~~G~ 357 (413)
T 1a12_A 304 EGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPA--------------------------VSSVACGASVGYAVTKDGR 357 (413)
T ss_dssp TSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSSS--------------------------EEEEEECSSEEEEEETTSC
T ss_pred CCCEEEeeCCCCCccCCCCCCccccCCEEecccCc--------------------------eeEEEECcceEEEEeCCCC
Confidence 99999999999999999965567788988886554 9999999999999999999
Q ss_pred eee
Q 021363 310 PIA 312 (313)
Q Consensus 310 vya 312 (313)
||+
T Consensus 358 v~~ 360 (413)
T 1a12_A 358 VFA 360 (413)
T ss_dssp EEE
T ss_pred EEE
Confidence 997
No 5
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=2.4e-43 Score=332.53 Aligned_cols=242 Identities=20% Similarity=0.288 Sum_probs=195.8
Q ss_pred cccceeeeeCCcEEEecCC-CCCCCCCCCCc-eeeEeeecCCCCceEEeecCCceEEEEeCCCCEEEecCCCCCCCcccc
Q 021363 10 ENEKMEECKETVVYMWGYL-PGTSPEKSPIL-SPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLT 87 (313)
Q Consensus 10 ~~~~~~l~~~g~vy~wG~n-~G~lg~~~~~~-~p~pv~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~ 87 (313)
.+-.+.++++|+||+||.| .||||.+.... .+.|..+....+|++|++ |..|+++|+++|+||+||.| ++||||.+
T Consensus 17 ~~h~~~l~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~i~~va~-G~~hs~~l~~~G~v~~wG~n-~~GqLG~~ 94 (413)
T 1a12_A 17 VSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEA-GGMHTVCLSKSGQVYSFGCN-DEGALGRD 94 (413)
T ss_dssp CCCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSSCEEEEEE-CSSEEEEEETTSCEEEEECC-TTSTTCSC
T ss_pred cccceeecCCCcEEEEECCCCCcCCCCCCccccccceEccCCCCeEEEEe-CCCeEEEEcCCCCEEEEECC-CCCCCCCC
Confidence 3446889999999999999 89999987643 456666666679999999 77899999999999999999 89999987
Q ss_pred CCC--CCCCCcccCCCCCCcEEEEeecCceeEEEecCCcEEEecC--CCCCCCCcccccCCCCCccccCCCCCCCCCCcc
Q 021363 88 SGK--HGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW--RECVPSAKVTRDFGSAGSFQKDSTGKQSALPTE 163 (313)
Q Consensus 88 ~~~--~~~~p~~i~~~~~~~i~~Is~G~~hs~~lt~~G~vy~wG~--n~~gqlG~~~~~~~~~~~~~~~~~g~~~~~~~~ 163 (313)
... ....|..+.+ ..+|++|+||.+|+++|+++|+||+||. |.+||||....
T Consensus 95 ~~~~~~~~~P~~v~l--~~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~---------------------- 150 (413)
T 1a12_A 95 TSVEGSEMVPGKVEL--QEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEP---------------------- 150 (413)
T ss_dssp CCSTTGGGSCEECCC--CSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBB----------------------
T ss_pred CCCCccccCCeEecC--CCcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCc----------------------
Confidence 653 3446766644 3599999999999999999999999999 99999984211
Q ss_pred CCCCCCccccceeeeceeeeccCCCCCCCCCCCcceeecceeeecCCCCcEEEEeeCCCeEEEEeCCCCEEEEeCCCCcc
Q 021363 164 QAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQ 243 (313)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~h~~al~~~G~vy~wG~n~~gq 243 (313)
......|.++ +...+|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 151 ---------------------------------~~~~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~Gq 195 (413)
T 1a12_A 151 ---------------------------------MKKSMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQ 195 (413)
T ss_dssp ---------------------------------TBCEEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTST
T ss_pred ---------------------------------cccccCCEEe--cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCc
Confidence 1123446666 45569999999999999999999999999999999
Q ss_pred cCCCCCCC----------CcccCeeecc----------cccccCCCCCcceeec-cccccCCCCC---------------
Q 021363 244 LGLGSRIK----------MVPTPHLIPC----------LEHAASGKDRPLLVRQ-GSVNSSGKAG--------------- 287 (313)
Q Consensus 244 lG~g~~~~----------~~~~p~~i~~----------~~~~~~g~~~~~~~~~-~~~~~~~~~~--------------- 287 (313)
||.+.... ....|+++.. +..++||..|+++|.. |+++.|+...
T Consensus 196 LG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P 275 (413)
T 1a12_A 196 LGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIP 275 (413)
T ss_dssp TCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEE
T ss_pred cCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCccccc
Confidence 99875311 1245755543 3458999999999987 8887666421
Q ss_pred -------C--ccEEEEEeCCceEEEEecCCceee
Q 021363 288 -------R--SYVKEIACGGRHSAVVTDMSYPIA 312 (313)
Q Consensus 288 -------~--~~i~~I~~G~~~s~alt~~G~vya 312 (313)
+ .+|++|+||.+|+++|+++|+||+
T Consensus 276 ~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~ 309 (413)
T 1a12_A 276 QNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYS 309 (413)
T ss_dssp EECGGGCCTTCCEEEEEECSSEEEEEETTSCEEE
T ss_pred EEchhccCCCceEEEEecccceEEEEeCCCCEEE
Confidence 1 349999999999999999999997
No 6
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=5.6e-43 Score=330.88 Aligned_cols=238 Identities=19% Similarity=0.241 Sum_probs=194.1
Q ss_pred ceeeeeCCcEEEecCC-CCCCCCCCC-CceeeEeeecCCCCceEEeecCCceEEEEeCCCCEEEecCCCCCCCccccCCC
Q 021363 13 KMEECKETVVYMWGYL-PGTSPEKSP-ILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGK 90 (313)
Q Consensus 13 ~~~l~~~g~vy~wG~n-~G~lg~~~~-~~~p~pv~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~~ 90 (313)
.++++++|+||+||.| .||||.+.. ...+.|.++.....|++|++ |..|+++|+++|+||+||.| ++||||.+...
T Consensus 36 ~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~v~~va~-G~~h~~~l~~~G~v~~wG~n-~~GqLG~~~~~ 113 (423)
T 3mvd_K 36 PKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVDISA-GGMHNLVLTKSGDIYSFGCN-DEGALGRDTSE 113 (423)
T ss_dssp CCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCSSEEEEEE-CSSEEEEEETTSCEEEEECC-SSSTTCSCCCS
T ss_pred ceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCCCceEEee-CCCeEEEEeCCCeEEEeECC-CCcCCCCCCcC
Confidence 6789999999999999 899998865 34456666666668999999 77899999999999999999 89999998765
Q ss_pred C--CCCCcccCCCCCCcEEEEeecCceeEEEecCCcEEEecC--CCCCCCCcccccCCCCCccccCCCCCCCCCCccCCC
Q 021363 91 H--GETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW--RECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAP 166 (313)
Q Consensus 91 ~--~~~p~~i~~~~~~~i~~Is~G~~hs~~lt~~G~vy~wG~--n~~gqlG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 166 (313)
. ...|.++. ...+|++|+||.+|+++|+++|+||+||. |.+||||...
T Consensus 114 ~~~~~~P~~v~--~~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~-------------------------- 165 (423)
T 3mvd_K 114 DGSESKPDLID--LPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTI-------------------------- 165 (423)
T ss_dssp TTSSSSCEECC--CSSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBT--------------------------
T ss_pred CccccCCeEEc--CCCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCC--------------------------
Confidence 5 34555554 44789999999999999999999999999 9999998521
Q ss_pred CCCccccceeeeceeeeccCCCCCCCCCCCcceeecceeeecCCCCcEEEEeeCCCeEEEEeCCCCEEEEeCCCCcccCC
Q 021363 167 PSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGL 246 (313)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~h~~al~~~G~vy~wG~n~~gqlG~ 246 (313)
......| +..+.+.+|++|+||.+|++||+++|+||+||.|.+||||.
T Consensus 166 ------------------------------~~~~~~p--~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~ 213 (423)
T 3mvd_K 166 ------------------------------DGNKRTP--IDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGR 213 (423)
T ss_dssp ------------------------------TBCEEEE--EESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSS
T ss_pred ------------------------------CCCCcee--eEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCC
Confidence 1122334 33456679999999999999999999999999999999999
Q ss_pred CCCC----------CCcccCeeecc-----cccccCCCCCcceee--ccccccCCC-----CC----------------C
Q 021363 247 GSRI----------KMVPTPHLIPC-----LEHAASGKDRPLLVR--QGSVNSSGK-----AG----------------R 288 (313)
Q Consensus 247 g~~~----------~~~~~p~~i~~-----~~~~~~g~~~~~~~~--~~~~~~~~~-----~~----------------~ 288 (313)
+... .....|.++.. +..+++|..+++.+. .|+++.|+. +. .
T Consensus 214 ~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~ 293 (423)
T 3mvd_K 214 LSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTEL 293 (423)
T ss_dssp CCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECC
T ss_pred CcccccccccccccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCC
Confidence 7642 24557888753 345889999999983 377766652 21 1
Q ss_pred ccEEEEEeCCceEEEEecCCceee
Q 021363 289 SYVKEIACGGRHSAVVTDMSYPIA 312 (313)
Q Consensus 289 ~~i~~I~~G~~~s~alt~~G~vya 312 (313)
.+|++|+||.+|++||+++|+||+
T Consensus 294 ~~v~~ia~G~~ht~alt~~G~v~~ 317 (423)
T 3mvd_K 294 KDIRHIAGGQHHTVILTTDLKCSV 317 (423)
T ss_dssp CSEEEEEECSSEEEEEETTCCEEE
T ss_pred CCeEEEEcccCeEEEEeCCCcEEE
Confidence 479999999999999999999997
No 7
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=1.2e-42 Score=328.65 Aligned_cols=267 Identities=21% Similarity=0.208 Sum_probs=194.3
Q ss_pred ceeeeeCCcEEEecCC-CCCCCCCCCCc--eeeEeeecCCCCceEEeecCCceEEEEeCCCCEEEecC--CCCCCCcccc
Q 021363 13 KMEECKETVVYMWGYL-PGTSPEKSPIL--SPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGS--ADDEGQSYLT 87 (313)
Q Consensus 13 ~~~l~~~g~vy~wG~n-~G~lg~~~~~~--~p~pv~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~--n~~~Gqlg~~ 87 (313)
.++|+++|+||+||.| .||||++.... .+.|.++....+|++|++ |..|+++|+++|+||+||. | .+||||.+
T Consensus 87 ~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~-G~~hs~al~~~G~v~~wG~~~n-~~GqlG~~ 164 (423)
T 3mvd_K 87 NLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISA-GDSHSACLLEDGRVFAWGSFRD-SHGNMGLT 164 (423)
T ss_dssp EEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEE-CSSEEEEEETTSCEEEEECEEC-SSSEEESB
T ss_pred EEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEc-CcCeEEEEeCCCeEEEEeCCCC-CCCCcCcC
Confidence 6789999999999999 89999876532 345555555568999999 8899999999999999998 8 89999987
Q ss_pred CCCCCCCCcccCCCCCCcEEEEeecCceeEEEecCCcEEEecCCCCCCCCcccccCCCCCccccCCCCCCCCCCc---cC
Q 021363 88 SGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPT---EQ 164 (313)
Q Consensus 88 ~~~~~~~p~~i~~~~~~~i~~Is~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~g~~~~~~~---~~ 164 (313)
..... ++|+.++...+|++|+||.+|+++|+++|+||+||.|.+||||................ ....+... ..
T Consensus 165 ~~~~~--~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~-~~~~p~~v~~~~~ 241 (423)
T 3mvd_K 165 IDGNK--RTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKR-DLLRPTQLIITRA 241 (423)
T ss_dssp TTBCE--EEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTT-TTSSCEEECCTTC
T ss_pred CCCCC--ceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccc-cccCCeEEeecCC
Confidence 65543 56666777889999999999999999999999999999999998653321111000000 00000000 00
Q ss_pred CCCCCcccc----cee-eece-eeeccCCCCCCCCCCCc--ceeecceeeecCCCCcEEEEeeCCCeEEEEeCCCCEEEE
Q 021363 165 APPSDKRAG----EEV-VKRR-KTSSAREESENPASGDE--FFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGW 236 (313)
Q Consensus 165 ~~~~~~~~~----~~~-~~~~-~~~~~~~~~~~~~~~~~--~~~~~p~~i~~~~~~~i~~I~~G~~h~~al~~~G~vy~w 236 (313)
........+ ..+ ++.. .+.|+.+.......+.. .....|..+. ..+|++|+||.+|+++|+++|+||+|
T Consensus 242 ~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~---~~~v~~ia~G~~ht~alt~~G~v~~w 318 (423)
T 3mvd_K 242 KPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE---LKDIRHIAGGQHHTVILTTDLKCSVV 318 (423)
T ss_dssp CCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC---CCSEEEEEECSSEEEEEETTCCEEEE
T ss_pred ccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC---CCCeEEEEcccCeEEEEeCCCcEEEE
Confidence 000001111 111 2333 34555555555444332 3445565554 34899999999999999999999999
Q ss_pred eCCCCcccCCCCCCCCcccCeeecccccccCCCCCcceeeccccccCCCCCCccEEEEEeCCceEEEEecCCceee
Q 021363 237 GYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDMSYPIA 312 (313)
Q Consensus 237 G~n~~gqlG~g~~~~~~~~p~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~I~~G~~~s~alt~~G~vya 312 (313)
|.|.+||||.+........|++++.+.. +|++|+||.+|++||+++|+||+
T Consensus 319 G~n~~GqLG~g~~~~~~~~p~~v~~l~~-------------------------~v~~ia~G~~hs~alt~~G~v~~ 369 (423)
T 3mvd_K 319 GRPEYGRLGLGDVKDVVEKPTIVKKLTE-------------------------KIVSVGCGEVCSYAVTIDGKLYS 369 (423)
T ss_dssp ECCGGGTTCSSSCCSCEEEEEECTTCCS-------------------------CEEEEEEETTEEEEEETTSCEEE
T ss_pred ECCCCCCCCCCCccccccCceEeccCCC-------------------------CEEEEEcCCCeEEEEcCCCCEEE
Confidence 9999999999987666678888886654 69999999999999999999997
No 8
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-42 Score=332.29 Aligned_cols=244 Identities=21% Similarity=0.257 Sum_probs=196.4
Q ss_pred ceeeeeCCcEEEecCC-CCCCCCCCC---CceeeEeee--c--CCCCceEEeecCCceEEEEeCCCCEEEecCCCCCCCc
Q 021363 13 KMEECKETVVYMWGYL-PGTSPEKSP---ILSPIPARL--C--GGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQS 84 (313)
Q Consensus 13 ~~~l~~~g~vy~wG~n-~G~lg~~~~---~~~p~pv~~--~--~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~Gql 84 (313)
..+++++|+||+||.| .||||.+.. ...+.|..+ + ...+|++|++ |..|+++|+++|+||+||.| ++|||
T Consensus 22 ~~~~~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~-G~~Ht~alt~~G~v~~wG~n-~~GqL 99 (473)
T 3of7_A 22 MYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAV-GGMHTLALDEESNVWSWGCN-DVGAL 99 (473)
T ss_dssp HHCCSSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEE-CSSEEEEEETTCCEEEEECC-TTSTT
T ss_pred cccCCCCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEe-CCCeEEEEecCCeEEEeECC-CCCCC
Confidence 4578889999999999 899998873 223344433 3 3568999999 77899999999999999999 89999
Q ss_pred cccCCCC-----------------------CCCCcccCC--C----CCCcEEEEeecCceeEEEecCCcEEEecC--CCC
Q 021363 85 YLTSGKH-----------------------GETPEPFPL--P----TEASVVKAAAGWAHCVSVTEAGEVYTWGW--REC 133 (313)
Q Consensus 85 g~~~~~~-----------------------~~~p~~i~~--~----~~~~i~~Is~G~~hs~~lt~~G~vy~wG~--n~~ 133 (313)
|.+.... ...|.+++. + ...+|++|+||.+|+++|+++|+||+||. +.+
T Consensus 100 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~ 179 (473)
T 3of7_A 100 GRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNE 179 (473)
T ss_dssp CSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEECEEETT
T ss_pred CCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCC
Confidence 9876543 235666653 2 36899999999999999999999999998 678
Q ss_pred CCCCcccccCCCCCccccCCCCCCCCCCccCCCCCCccccceeeeceeeeccCCCCCCCCCCCcceeecceeeecCCCCc
Q 021363 134 VPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVK 213 (313)
Q Consensus 134 gqlG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~ 213 (313)
||||... ........|.++..+.+.+
T Consensus 180 GqLG~~~------------------------------------------------------~~~~~~~~P~~v~~l~~~~ 205 (473)
T 3of7_A 180 GILGFYQ------------------------------------------------------DKIKIQKTPWKVPTFSKYN 205 (473)
T ss_dssp EEEESBT------------------------------------------------------TTBSCEEEEEECCCCCSSC
T ss_pred CccCCCC------------------------------------------------------CCCccccCcEEccccCCCC
Confidence 9988421 1122456788888888888
Q ss_pred EEEEeeCCCeEEEEeCCCCEEEEeCCCCcccCCCCCCC---CcccCeeec--ccccccCCCCCcceeec-cccccCCC--
Q 021363 214 ITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIK---MVPTPHLIP--CLEHAASGKDRPLLVRQ-GSVNSSGK-- 285 (313)
Q Consensus 214 i~~I~~G~~h~~al~~~G~vy~wG~n~~gqlG~g~~~~---~~~~p~~i~--~~~~~~~g~~~~~~~~~-~~~~~~~~-- 285 (313)
|++|+||.+|++||+++|+||+||.|.+||||.+.... ....|+++. .+..++||..|+++|.. |+++.||.
T Consensus 206 i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~ 285 (473)
T 3of7_A 206 IVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQ 285 (473)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEECSSEEEEEETTSCEEEEEECT
T ss_pred EEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEecCCCeEEEEecCCCEEEeCCCC
Confidence 99999999999999999999999999999999986422 345677664 45679999999999977 78876652
Q ss_pred ---CC---------------------CccEEEEEeCCceEEEEecCCceee
Q 021363 286 ---AG---------------------RSYVKEIACGGRHSAVVTDMSYPIA 312 (313)
Q Consensus 286 ---~~---------------------~~~i~~I~~G~~~s~alt~~G~vya 312 (313)
+. ..+|++|+||.+|+++|+++|+||+
T Consensus 286 ~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~ 336 (473)
T 3of7_A 286 FGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYS 336 (473)
T ss_dssp TSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEECSSEEEEEETTSCEEE
T ss_pred CCCcCCCCcccCCceeeccccccccCCccEEEEEeCCCeEEEEeCCCeEEE
Confidence 11 1469999999999999999999997
No 9
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-42 Score=330.36 Aligned_cols=268 Identities=20% Similarity=0.273 Sum_probs=192.8
Q ss_pred ceeeeeCCcEEEecCC-CCCCCCCCCCc-------------------------eeeEeee--c----CCCCceEEeecCC
Q 021363 13 KMEECKETVVYMWGYL-PGTSPEKSPIL-------------------------SPIPARL--C----GGDSWKDVCGGGC 60 (313)
Q Consensus 13 ~~~l~~~g~vy~wG~n-~G~lg~~~~~~-------------------------~p~pv~~--~----~~~~i~~i~~~g~ 60 (313)
.++|+++|+||+||.| .||||.+.... .|.++.. + .+.+|++|+| |.
T Consensus 79 t~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~-G~ 157 (473)
T 3of7_A 79 TLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAA-TD 157 (473)
T ss_dssp EEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEE-CS
T ss_pred EEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEc-cC
Confidence 6789999999999999 89999876432 3444432 1 3679999999 88
Q ss_pred ceEEEEeCCCCEEEecC--CCCCCCccccCCC--CCCCCcccCCCCCCcEEEEeecCceeEEEecCCcEEEecCCCCCCC
Q 021363 61 GFALATSESGKLITWGS--ADDEGQSYLTSGK--HGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPS 136 (313)
Q Consensus 61 ~h~~~lt~~G~vy~wG~--n~~~Gqlg~~~~~--~~~~p~~i~~~~~~~i~~Is~G~~hs~~lt~~G~vy~wG~n~~gql 136 (313)
.|+++|+++|+||+||. + ..||||..... ....|..++.+...+|++|+||.+|+++|+++|+||+||.|.+|||
T Consensus 158 ~hs~alt~~G~vy~wG~n~~-~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqL 236 (473)
T 3of7_A 158 NMSCALFSNGEVYAWGTFRC-NEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQL 236 (473)
T ss_dssp SEEEEEETTSCEEEEECEEE-TTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTT
T ss_pred CEEEEEeCCCeEEEeeCCcC-CCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCC
Confidence 99999999999999998 5 68999986543 3346667776777789999999999999999999999999999999
Q ss_pred CcccccCCCCCccccCCCCCCCCCCccCCCCCCccccceeeeceee-eccCCCCCCCCCCCc----ceeecceeeecCCC
Q 021363 137 AKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKT-SSAREESENPASGDE----FFTLSPCLVTLNPG 211 (313)
Q Consensus 137 G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~p~~i~~~~~ 211 (313)
|...........+ .+.........++++. ......+++...+ .|+.+.......++. .....|+++..+.+
T Consensus 237 G~~~~~~~~~~~~---~p~~~~~~~v~~Ia~G-~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~ 312 (473)
T 3of7_A 237 GRKVMERFRLKTL---DPRPFGLRHVKYIASG-ENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDN 312 (473)
T ss_dssp SSCCCGGGTTTTC---SCEECSCCSEEEEEEC-SSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTT
T ss_pred CCCcccccccccc---CceecCCcceEEEecC-CCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCC
Confidence 9754221100000 0000000001111111 1122234455444 555555555544443 25678888888888
Q ss_pred CcEEEEeeCCCeEEEEeCCCCEEEEeCCCCcccCCCCCC-------------CCcccCeeecccccccCCCCCcceeecc
Q 021363 212 VKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRI-------------KMVPTPHLIPCLEHAASGKDRPLLVRQG 278 (313)
Q Consensus 212 ~~i~~I~~G~~h~~al~~~G~vy~wG~n~~gqlG~g~~~-------------~~~~~p~~i~~~~~~~~g~~~~~~~~~~ 278 (313)
.+|++|+||.+|+++|+++|+||+||.|.+||||.+... .....|.+++.+
T Consensus 313 ~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~---------------- 376 (473)
T 3of7_A 313 VVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNV---------------- 376 (473)
T ss_dssp CCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSS----------------
T ss_pred ccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCC----------------
Confidence 899999999999999999999999999999999987531 112234444422
Q ss_pred ccccCCCCCCccEEEEEeCCceEEEEecCCceee
Q 021363 279 SVNSSGKAGRSYVKEIACGGRHSAVVTDMSYPIA 312 (313)
Q Consensus 279 ~~~~~~~~~~~~i~~I~~G~~~s~alt~~G~vya 312 (313)
.+|++|+||.+|++||+++|+||+
T Consensus 377 ----------~~v~~Ia~G~~hs~al~~~G~vy~ 400 (473)
T 3of7_A 377 ----------PKFKSVAAGSHHSVAVAQNGIAYS 400 (473)
T ss_dssp ----------CCEEEEEECSSEEEEEETTSCEEE
T ss_pred ----------CceEEEEeCCCeEEEEeCCCcEEE
Confidence 259999999999999999999997
No 10
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=5.1e-40 Score=309.17 Aligned_cols=215 Identities=26% Similarity=0.394 Sum_probs=186.7
Q ss_pred ceeeeeCCcEEEecCC-CCCCCCCCCCce--eeEeeecCCCCceEEeecCCceEEEEeCCCCEEEecCCCCCCCccccCC
Q 021363 13 KMEECKETVVYMWGYL-PGTSPEKSPILS--PIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSG 89 (313)
Q Consensus 13 ~~~l~~~g~vy~wG~n-~G~lg~~~~~~~--p~pv~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~ 89 (313)
.++|+++|+||+||.| .||||.+..... |.++..+.+.+|++|++ |..|+++|+++|+||+||.| .+||||.++.
T Consensus 133 ~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~-G~~hs~alt~~G~v~~wG~n-~~GqlG~g~~ 210 (406)
T 4d9s_A 133 CLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAA-GAEHTAAVTEDGDLYGWGWG-RYGNLGLGDR 210 (406)
T ss_dssp EEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEE-CSSEEEEEETTSCEEEEECC-TTSTTCSSSS
T ss_pred eEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEec-CCCeEEEEeCCCCEEEeeCC-CCCCCCCCCC
Confidence 6789999999999999 899998766544 44555555779999999 88999999999999999999 8999999988
Q ss_pred CCCCCCcccCCCCCCcEEEEeecCceeEEEecCCcEEEecCCCCCCCCcccccCCCCCccccCCCCCCCCCCccCCCCCC
Q 021363 90 KHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSD 169 (313)
Q Consensus 90 ~~~~~p~~i~~~~~~~i~~Is~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 169 (313)
.....|.++..+...+|++|+||.+|+++|+++|+||+||.|.+||||.
T Consensus 211 ~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~------------------------------- 259 (406)
T 4d9s_A 211 TDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGH------------------------------- 259 (406)
T ss_dssp CCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCS-------------------------------
T ss_pred CCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCC-------------------------------
Confidence 7777888888888899999999999999999999999999999999995
Q ss_pred ccccceeeeceeeeccCCCCCCCCCCCcceeecceeeecCCCCcEEEEeeCCCeEEEEeCCCCEEEEeCCCCcccCCCCC
Q 021363 170 KRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSR 249 (313)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~h~~al~~~G~vy~wG~n~~gqlG~g~~ 249 (313)
++......|+++..+.+.+|++|+||.+|++||+++|+||+||.|.+||||.+..
T Consensus 260 -------------------------g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~ 314 (406)
T 4d9s_A 260 -------------------------GDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNN 314 (406)
T ss_dssp -------------------------SSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSS
T ss_pred -------------------------CCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCC
Confidence 2233456788888888889999999999999999999999999999999999875
Q ss_pred CCCcccCeeeccc-----ccccCCCCCcceeec-cccccCCCC
Q 021363 250 IKMVPTPHLIPCL-----EHAASGKDRPLLVRQ-GSVNSSGKA 286 (313)
Q Consensus 250 ~~~~~~p~~i~~~-----~~~~~g~~~~~~~~~-~~~~~~~~~ 286 (313)
.....|.+++.+ ..++||..|+++|.. |+++.||..
T Consensus 315 -~~~~~p~~v~~~~~~~v~~va~G~~hs~alt~~G~v~~wG~n 356 (406)
T 4d9s_A 315 -LDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRG 356 (406)
T ss_dssp -SCEEEEEEECCGGGCCEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred -CCCccCEEEeccCCCcEEEEEeCCCeEEEEeCCCCEEEecCC
Confidence 456678888643 458999999999987 888777753
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=1.7e-37 Score=278.07 Aligned_cols=235 Identities=21% Similarity=0.239 Sum_probs=172.5
Q ss_pred ceeeeeCCcEEEecCC-CCCCCCCCCCceeeEeeecCCCCceEEeecCCceEEEEeCCCCEEEecCCCCCCCccccCCCC
Q 021363 13 KMEECKETVVYMWGYL-PGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKH 91 (313)
Q Consensus 13 ~~~l~~~g~vy~wG~n-~G~lg~~~~~~~p~pv~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~~~ 91 (313)
.++|+ +|+||+||.| .||||. |... ..+|++|++ |..|+++|+ ||+||+||.| .+||||.
T Consensus 36 ~~~l~-~G~v~~wG~n~~Gqlg~--------p~~~--~~~i~~ia~-G~~hs~~l~-~G~v~~wG~n-~~Gqlg~----- 96 (282)
T 3qhy_B 36 GLALK-GGKVLGWGANLNGQLTM--------PAAT--QSGVDAIAA-GNYHSLALK-DGEVIAWGGN-EDGQTTV----- 96 (282)
T ss_dssp EEEEE-TTEEEEEECCSSSTTSC--------CGGG--GSCCCEEEE-CSSEEEEEE-TTEEEEEECC-TTSTTCC-----
T ss_pred EEEEE-CCEEEEEeCCCCCCCCC--------CccC--CCCEEEEEe-CCCEEEEEE-CCEEEEeeCC-CCCCCCC-----
Confidence 56787 9999999999 899984 2222 348999999 889999996 9999999999 8999974
Q ss_pred CCCCcccCCCCCCcEEEEeecCceeEEEecCCcEEEecCCCCCCCCcccccCCCCCccccCCCCCCCCCCccCCCCCCcc
Q 021363 92 GETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKR 171 (313)
Q Consensus 92 ~~~p~~i~~~~~~~i~~Is~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 171 (313)
|..+ ..+|++|+||.+|+++|+ +|+||+||.|.+||||..... ...+. ++.....
T Consensus 97 ---P~~~----~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~---~~~i~-------------~i~~G~~- 151 (282)
T 3qhy_B 97 ---PAEA----RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEA---QSGVT-------------ALDGGVY- 151 (282)
T ss_dssp ---CGGG----SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGGG---GSSEE-------------EEEECSS-
T ss_pred ---Cccc----CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCccC---CCCeE-------------EEEcccC-
Confidence 4444 258999999999999999 999999999999999842211 01111 1111111
Q ss_pred ccceeeeceeeeccCCCCCCCCCCCcceeecceeeecCCCCcEEEEeeCCCeEEEEeCCCCEEEEeCCCCcccCCCCCCC
Q 021363 172 AGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIK 251 (313)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~h~~al~~~G~vy~wG~n~~gqlG~g~~~~ 251 (313)
....+++...+.|+.+...... .|..+ ..+|++|+||.+|+++| ++|+||+||.|.+||||.+..
T Consensus 152 ~~~~l~~G~v~~wG~n~~gqlg--------~p~~~----~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~~-- 216 (282)
T 3qhy_B 152 TALAVKNGGVIAWGDNYFGQTT--------VPAEA----QSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTE-- 216 (282)
T ss_dssp EEEEEETTEEEEEECCTTSTTS--------CCGGG----GSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGG--
T ss_pred EEEEEECCEEEEecCCCCCCCC--------Cceec----CCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCcc--
Confidence 1122343334455444333321 33332 35899999999999999 899999999999999997642
Q ss_pred CcccCeeecccccccCCCCCcceeeccccccCCCCCC------ccEEEEEeCCceEEEEecCCceee
Q 021363 252 MVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGR------SYVKEIACGGRHSAVVTDMSYPIA 312 (313)
Q Consensus 252 ~~~~p~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~i~~I~~G~~~s~alt~~G~vya 312 (313)
....+..++||..|++++.+|+++.|+.... ..|++|+||..|++||+++++.+-
T Consensus 217 ------~~~~v~~i~~G~~h~~al~~g~v~~wG~n~~gq~~v~~~v~~iaaG~~h~~al~~~~~~~~ 277 (282)
T 3qhy_B 217 ------ALSGVSAIASGEWYSLALKNGKVIAWGSSRTAPSSVQSGVSSIEAGPNAAYALKGGSGSGH 277 (282)
T ss_dssp ------GGSSCCEEEECSSCEEEEETTEEEEESTTCCCCGGGSSCEEEEEECSSCEEEEEC------
T ss_pred ------cCCCceEEEcCCCEEEEEECCEEEEecCCCCccccCCCCcEEEEECcCeEEEEecCCCCCc
Confidence 1234667899999999999888988886533 679999999999999999998764
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=6e-36 Score=268.07 Aligned_cols=227 Identities=25% Similarity=0.328 Sum_probs=165.3
Q ss_pred CcEEEecCC-CCCCCCCCCCceeeEeeecCCCCceEEeecCCceEEEEeCCCCEEEecCCCCCCCccccCCCCCCCCccc
Q 021363 20 TVVYMWGYL-PGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPF 98 (313)
Q Consensus 20 g~vy~wG~n-~G~lg~~~~~~~p~pv~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~~~~~~p~~i 98 (313)
.+||+||.| +.++ .+.|++. ..+|++|++ |..|+++|+ +|+||+||.| ++||||. |.+
T Consensus 2 ~~v~~WG~n~~~~~-------~~~p~~~--~~~i~~ia~-G~~h~~~l~-~G~v~~wG~n-~~Gqlg~--------p~~- 60 (282)
T 3qhy_B 2 TSVVAWGGNNDWGE-------ATVPAEA--QSGVDAIAG-GYFHGLALK-GGKVLGWGAN-LNGQLTM--------PAA- 60 (282)
T ss_dssp CEEEEECSCCTTST-------TCCCGGG--SSSCCEEEE-CSSEEEEEE-TTEEEEEECC-SSSTTSC--------CGG-
T ss_pred eEEEEeCCCCCcCc-------ccCCccc--cCCCcEEEe-CCCeEEEEE-CCEEEEEeCC-CCCCCCC--------Ccc-
Confidence 469999998 3333 2334433 348999999 878999998 9999999999 8999973 322
Q ss_pred CCCCCCcEEEEeecCceeEEEecCCcEEEecCCCCCCCCcccccCCCCCccccCCCCCCCCCCccCCCCCCccccceeee
Q 021363 99 PLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVK 178 (313)
Q Consensus 99 ~~~~~~~i~~Is~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 178 (313)
...+|++|+||.+|+++|+ +|+||+||.|.+||||....- ... ..++.... .....++
T Consensus 61 ---~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~P~~~---~~~-------------v~~ia~G~-~hs~al~- 118 (282)
T 3qhy_B 61 ---TQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTVPAEA---RSG-------------VDAIAAGA-WASYALK- 118 (282)
T ss_dssp ---GGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCCCGGG---SSS-------------EEEEEEET-TEEEEEE-
T ss_pred ---CCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCCCccc---CCC-------------eEEEECcC-CEEEEEe-
Confidence 2358999999999999996 999999999999999842110 000 11111111 1122344
Q ss_pred ceee-eccCCCCCCCCCCCcceeecceeeecCCCCcEEEEeeCCCeEEEEeCCCCEEEEeCCCCcccCCCCCCCCcccCe
Q 021363 179 RRKT-SSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPH 257 (313)
Q Consensus 179 ~~~~-~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~h~~al~~~G~vy~wG~n~~gqlG~g~~~~~~~~p~ 257 (313)
...+ .|+.+..... ..|. ....+|++|+||.+|+++|+ +|+||+||.|.+|||| .|.
T Consensus 119 ~G~v~~wG~n~~gql--------g~~~----~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg---------~p~ 176 (282)
T 3qhy_B 119 DGKVIAWGDDSDGQT--------TVPA----EAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTT---------VPA 176 (282)
T ss_dssp TTEEEEEECCTTSTT--------SCCG----GGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTS---------CCG
T ss_pred CCeEEEecCCCCCcC--------CCCc----cCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCC---------Cce
Confidence 4444 4444332222 1232 23358999999999999999 7999999999999997 243
Q ss_pred ee-cccccccCCCCCcceeeccccccCCCCCC----------ccEEEEEeCCceEEEEecCCceee
Q 021363 258 LI-PCLEHAASGKDRPLLVRQGSVNSSGKAGR----------SYVKEIACGGRHSAVVTDMSYPIA 312 (313)
Q Consensus 258 ~i-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----------~~i~~I~~G~~~s~alt~~G~vya 312 (313)
++ ..+..++||..|+++|.+|+++.|+.... .+|++|+||.+|+++|+ +|+||+
T Consensus 177 ~~~~~v~~i~~G~~hs~al~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~-~g~v~~ 241 (282)
T 3qhy_B 177 EAQSGVDDVAGGIFHSLALKDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK-NGKVIA 241 (282)
T ss_dssp GGGSSEEEEEECSSEEEEEETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE-TTEEEE
T ss_pred ecCCCeEEEEecCCEEEEEECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE-CCEEEE
Confidence 33 34567899999999995599999998877 67899999999999999 999996
No 13
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=95.64 E-value=0.02 Score=48.88 Aligned_cols=70 Identities=21% Similarity=0.311 Sum_probs=55.8
Q ss_pred CCceEEeecCCceEEEEeCCCCEEEecCCCCCCCccccCCCCCCCCcccCCCCCCcEEEEeecCceeEEEecCCcEEEec
Q 021363 50 DSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129 (313)
Q Consensus 50 ~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~~~~~~p~~i~~~~~~~i~~Is~G~~hs~~lt~~G~vy~wG 129 (313)
.++-+|+ +...|..++--|+++|.||.+ ++||+-. |. ...++.++.+|.++++-+..-..|-.||
T Consensus 309 n~i~~Vs-G~y~H~vvi~gd~el~sFG~~-sNGQ~~i--------p~-----tagPfla~~AG~~fTVTVn~~nyv~FWG 373 (400)
T 4gbf_A 309 NPIGGVS-GLYTHYTVMYGDGQIAFFGNN-DNGQCDV--------DD-----HAGPYIQLAAGHNFTVTVNTLNQVMFWG 373 (400)
T ss_dssp SCCCCCB-CSSSEEEC-CTTTCCCEEECC-TTSTTCC--------CG-----GGCCEEEEEECSSEEEEEETTCCEEEEE
T ss_pred Ccccccc-ccccceEEEecCceeEEeccC-CCCceec--------CC-----CcchHHhHhccCCeEEEEeceeeEEEec
Confidence 3566675 377799999999999999999 8999832 22 1257899999999999999999999999
Q ss_pred CCCCC
Q 021363 130 WRECV 134 (313)
Q Consensus 130 ~n~~g 134 (313)
.....
T Consensus 374 DSPDN 378 (400)
T 4gbf_A 374 DSPDN 378 (400)
T ss_dssp CCTTS
T ss_pred CCCCc
Confidence 76554
No 14
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=94.03 E-value=0.077 Score=45.34 Aligned_cols=72 Identities=17% Similarity=0.233 Sum_probs=58.1
Q ss_pred CcEEEEeecCceeEEEecCCcEEEecCCCCCCCCcccccCCCCCccccCCCCCCCCCCccCCCCCCccccceeeeceeee
Q 021363 104 ASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTS 183 (313)
Q Consensus 104 ~~i~~Is~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (313)
..|-+|+.-..|..++--++++++||+++.||+-.
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~i--------------------------------------------- 343 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDV--------------------------------------------- 343 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCC---------------------------------------------
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceec---------------------------------------------
Confidence 56788888899999999999999999999987641
Q ss_pred ccCCCCCCCCCCCcceeecceeeecCCCCcEEEEeeCCCeEEEEeCCCCEEEEeCCCCccc
Q 021363 184 SAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQL 244 (313)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~h~~al~~~G~vy~wG~n~~gql 244 (313)
|-. .-+..++.+|.++++-+..-+++--||+.-...|
T Consensus 344 -------------------p~t-----agPfla~~AG~~fTVTVn~~nyv~FWGDSPDNSL 380 (400)
T 4gbf_A 344 -------------------DDH-----AGPYIQLAAGHNFTVTVNTLNQVMFWGDSPDNSL 380 (400)
T ss_dssp -------------------CGG-----GCCEEEEEECSSEEEEEETTCCEEEEECCTTSTT
T ss_pred -------------------CCC-----cchHHhHhccCCeEEEEeceeeEEEecCCCCcce
Confidence 110 1278899999999999999999999998754433
No 15
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=82.80 E-value=22 Score=30.47 Aligned_cols=70 Identities=14% Similarity=0.002 Sum_probs=42.9
Q ss_pred CCCceEEee-cCCceEEEEeCCCCEEEecCCCCCCCccccCCCCCCCCcccCCCCCCcEEEEeec---CceeEEEecCCc
Q 021363 49 GDSWKDVCG-GGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG---WAHCVSVTEAGE 124 (313)
Q Consensus 49 ~~~i~~i~~-~g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~~~~~~p~~i~~~~~~~i~~Is~G---~~hs~~lt~~G~ 124 (313)
+..+..+.. -...+.+++|++|++|.--.. +.-.. .... + +..+.+|+.+.+- ....+++|++|.
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~-~lp~~---~~~~------l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~ 91 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGS-QALQG---SKVS------L-KSREEKIVGAFIREKFGNRLLLATKKGY 91 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSH-HHHTS---EECC------C-SSTTCCEEEEEEGGGSCSEEEEEETTSE
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhh-hCccC---cccc------c-CCCCCEEEEEECCcCCCCEEEEEeCCCE
Confidence 444554433 133468899999999986554 21110 0000 3 4457888888762 257888999998
Q ss_pred EEEec
Q 021363 125 VYTWG 129 (313)
Q Consensus 125 vy~wG 129 (313)
+.-.-
T Consensus 92 iKr~~ 96 (276)
T 3no0_A 92 VKKIP 96 (276)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88764
No 16
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=82.39 E-value=25 Score=30.93 Aligned_cols=69 Identities=13% Similarity=0.064 Sum_probs=43.0
Q ss_pred CCceEEEEeCCCCEEEecCCCCCCCccccCCCCCCCCcccCCCCCCcEEEEeecC-----ceeEEEecCCcEEEec
Q 021363 59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGW-----AHCVSVTEAGEVYTWG 129 (313)
Q Consensus 59 g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~~~~~~p~~i~~~~~~~i~~Is~G~-----~hs~~lt~~G~vy~wG 129 (313)
...+.+++|+.|++|..-.. +.-..+.. ..-......+++..+.+|+.+.+.. ...+++|++|.+.-.-
T Consensus 52 t~d~ll~fT~~Gr~y~~~~~-~lp~~~r~-~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~ 125 (327)
T 3uc1_A 52 THDLILFFTTQGRVYRAKAY-DLPEASRT-ARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSK 125 (327)
T ss_dssp TTSEEEEEETTSEEEEEEGG-GSCBCCSS-SCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEEHH-HCcCCCcc-CCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeE
Confidence 44568889999999998765 22221110 0001111234556678898887764 4678889999887654
No 17
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=81.46 E-value=26 Score=30.50 Aligned_cols=115 Identities=14% Similarity=0.007 Sum_probs=60.8
Q ss_pred cceeeeeCCcEEEecCC-CCCCCCCCCCceeeEeeecCCCCceEEe-ecCCceEEEEeCCCCEEEecCCCCCCCccccCC
Q 021363 12 EKMEECKETVVYMWGYL-PGTSPEKSPILSPIPARLCGGDSWKDVC-GGGCGFALATSESGKLITWGSADDEGQSYLTSG 89 (313)
Q Consensus 12 ~~~~l~~~g~vy~wG~n-~G~lg~~~~~~~p~pv~~~~~~~i~~i~-~~g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~ 89 (313)
--+.+|++|-|.----. ....... ..-..-+....+..++.+. +.+..+.+++|+.|++|.+-.. +--..+...
T Consensus 10 ~~v~~T~~G~iKr~~~~~~~~~~~~--~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~-~ip~~~r~~- 85 (312)
T 1suu_A 10 IVVMLTKKGFLKRLSQNEYKLQGTG--GKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAY-EIKDSSRAS- 85 (312)
T ss_dssp EEEEEETTCBEEEEEGGGSCBCCSS--CCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGG-GSCC------
T ss_pred EEEEEeCCCEEEEeEHHHhhccccC--CCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHH-HCCCCCccC-
Confidence 35667788877655322 1000000 0011122333344444432 2244578999999999998765 322221110
Q ss_pred CCCCCCcccCCCCCCcEEEEeec-----CceeEEEecCCcEEEecC
Q 021363 90 KHGETPEPFPLPTEASVVKAAAG-----WAHCVSVTEAGEVYTWGW 130 (313)
Q Consensus 90 ~~~~~p~~i~~~~~~~i~~Is~G-----~~hs~~lt~~G~vy~wG~ 130 (313)
.-......+.+..+.+|+.+... ..+.+++|++|.++-.--
T Consensus 86 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l 131 (312)
T 1suu_A 86 KGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFES 131 (312)
T ss_dssp --CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEG
T ss_pred CCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEH
Confidence 11112234455566778877664 456889999999988643
No 18
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=70.25 E-value=59 Score=28.89 Aligned_cols=67 Identities=10% Similarity=0.110 Sum_probs=42.8
Q ss_pred CCCceEEeecCCceEEEEeCCCCEEEecCCCCCCCccccCCCCCCCCcccCCCCCCcEEEEeecCceeEEEecCCcEEEe
Q 021363 49 GDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTW 128 (313)
Q Consensus 49 ~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~~~~~~p~~i~~~~~~~i~~Is~G~~hs~~lt~~G~vy~w 128 (313)
...|..++. ...+.+.-+.||.|+.|-.. . +++- .........|..++......+.-..||.|+.|
T Consensus 173 ~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~-~-~~~~-----------~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vw 238 (435)
T 1p22_A 173 TGSVLCLQY-DERVIITGSSDSTVRVWDVN-T-GEML-----------NTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVW 238 (435)
T ss_dssp SSCEEEEEC-CSSEEEEEETTSCEEEEESS-S-CCEE-----------EEECCCCSCEEEEECCTTEEEEEETTSCEEEE
T ss_pred CCcEEEEEE-CCCEEEEEcCCCeEEEEECC-C-CcEE-----------EEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEE
Confidence 345666665 32455666789999999875 2 3221 00111235677888777777777889999998
Q ss_pred c
Q 021363 129 G 129 (313)
Q Consensus 129 G 129 (313)
=
T Consensus 239 d 239 (435)
T 1p22_A 239 D 239 (435)
T ss_dssp E
T ss_pred e
Confidence 4
No 19
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=57.08 E-value=1e+02 Score=27.01 Aligned_cols=110 Identities=11% Similarity=0.011 Sum_probs=63.4
Q ss_pred ceeeeeCCcEEEecCCCCCCCCCCCCceeeE----eeecCCCCceEEeecC----CceEEEEeCCCCEEEecCCCCCCCc
Q 021363 13 KMEECKETVVYMWGYLPGTSPEKSPILSPIP----ARLCGGDSWKDVCGGG----CGFALATSESGKLITWGSADDEGQS 84 (313)
Q Consensus 13 ~~~l~~~g~vy~wG~n~G~lg~~~~~~~p~p----v~~~~~~~i~~i~~~g----~~h~~~lt~~G~vy~wG~n~~~Gql 84 (313)
.++.|+.|++|..-.. .+........-.| +++..+.+|+.+.... ..+.+++|.+|.+.-.-.. ++-..
T Consensus 56 ll~fT~~Gr~y~~~~~--~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~-~~~~~ 132 (327)
T 3uc1_A 56 ILFFTTQGRVYRAKAY--DLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLT-DFDSN 132 (327)
T ss_dssp EEEEETTSEEEEEEGG--GSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGG-GGCCC
T ss_pred EEEEeCCCeEEEEEHH--HCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHH-Hhhcc
Confidence 6678888999988654 1111111111222 3344578888886643 2367889999988877654 32211
Q ss_pred cccCCCCCCCCcccCCCCCCcEEE--EeecCceeEEEecCCcEEEecCC
Q 021363 85 YLTSGKHGETPEPFPLPTEASVVK--AAAGWAHCVSVTEAGEVYTWGWR 131 (313)
Q Consensus 85 g~~~~~~~~~p~~i~~~~~~~i~~--Is~G~~hs~~lt~~G~vy~wG~n 131 (313)
. ..-...+.+..+..++. ++.+.++.+++|++|++|.+--.
T Consensus 133 ~------r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~ 175 (327)
T 3uc1_A 133 R------SGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSAT 175 (327)
T ss_dssp C------SSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECC
T ss_pred c------cCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECc
Confidence 0 00111122223333433 34567889999999999988755
No 20
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=56.84 E-value=83 Score=26.02 Aligned_cols=112 Identities=12% Similarity=0.049 Sum_probs=58.3
Q ss_pred ccceeeeeCCcEEEecCCCCCC-CCCCCCceeeEeeecCCCCceEEeecCCceEEEEeCCCCEEEecCCCCCCCccccCC
Q 021363 11 NEKMEECKETVVYMWGYLPGTS-PEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSG 89 (313)
Q Consensus 11 ~~~~~l~~~g~vy~wG~n~G~l-g~~~~~~~p~pv~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~ 89 (313)
...+.++.+|++++++...+.+ ...................|..++....+..++...+|.|+.|-.. .....
T Consensus 12 v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~-~~~~~----- 85 (337)
T 1gxr_A 12 AYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDIS-HPGNK----- 85 (337)
T ss_dssp CCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETT-STTCC-----
T ss_pred eeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcCCCeEEEEECC-CCCce-----
Confidence 3467788999999988864332 2222222211122233556666665333344555558999999875 21111
Q ss_pred CCCCCCcccCCCCCCcEEEEeec--CceeEEEecCCcEEEecC
Q 021363 90 KHGETPEPFPLPTEASVVKAAAG--WAHCVSVTEAGEVYTWGW 130 (313)
Q Consensus 90 ~~~~~p~~i~~~~~~~i~~Is~G--~~hs~~lt~~G~vy~wG~ 130 (313)
..............|..++.. ....++-..+|.|+.|-.
T Consensus 86 --~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~ 126 (337)
T 1gxr_A 86 --SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL 126 (337)
T ss_dssp --SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEEC
T ss_pred --eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEEC
Confidence 011110011223456666555 334455567888888853
No 21
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=55.45 E-value=1.1e+02 Score=26.78 Aligned_cols=69 Identities=13% Similarity=0.062 Sum_probs=41.8
Q ss_pred CCceEEEEeCCCCEEEecCCCCCCCccccCCCCCCCCcccCCCCCCcEEEEeecC-----ceeEEEecCCcEEEec
Q 021363 59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGW-----AHCVSVTEAGEVYTWG 129 (313)
Q Consensus 59 g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~~~~~~p~~i~~~~~~~i~~Is~G~-----~hs~~lt~~G~vy~wG 129 (313)
+..+.+++|+.|++|..-.. +--..+... .-......+++..+.+|+.+..-. .+.+++|++|.+.-.-
T Consensus 49 t~d~ll~fT~~Gr~~~~~~~-elp~~~r~a-~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~ 122 (323)
T 1wp5_A 49 TKDVLLLFTNKGNYLYCPVH-ELPDIRWKD-LGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTE 122 (323)
T ss_dssp TTSEEEEEETTSEEEEEEGG-GSCBCCTTS-CCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEECCCEEEEEEHH-HCcCCCCCC-CCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeE
Confidence 55578999999999998776 322222110 001122334455567788765443 3578889999887653
No 22
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=55.21 E-value=1.1e+02 Score=26.98 Aligned_cols=70 Identities=14% Similarity=0.137 Sum_probs=42.6
Q ss_pred CCCceEEeecCCceEEEEeCCCCEEEecCCCCCCCccccCCCCCCCCcccCCCCCCcEEEEeecCceeEEEecCCcEEEe
Q 021363 49 GDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTW 128 (313)
Q Consensus 49 ~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~~~~~~p~~i~~~~~~~i~~Is~G~~hs~~lt~~G~vy~w 128 (313)
...|..++. ..+..+.-+.||.|+.|-.. ....+ .+..........|..++....+.+.-..||.|..|
T Consensus 213 ~~~v~~l~~-~~~~l~s~s~dg~i~vwd~~-~~~~~---------~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw 281 (435)
T 1p22_A 213 CEAVLHLRF-NNGMMVTCSKDRSIAVWDMA-SPTDI---------TLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVW 281 (435)
T ss_dssp CSCEEEEEC-CTTEEEEEETTSCEEEEECS-SSSCC---------EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEE
T ss_pred CCcEEEEEE-cCCEEEEeeCCCcEEEEeCC-CCCCc---------eeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEE
Confidence 345666655 33456667788999999765 21110 01111122235677777777777777889999998
Q ss_pred c
Q 021363 129 G 129 (313)
Q Consensus 129 G 129 (313)
=
T Consensus 282 d 282 (435)
T 1p22_A 282 N 282 (435)
T ss_dssp E
T ss_pred E
Confidence 5
No 23
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=54.73 E-value=95 Score=26.05 Aligned_cols=103 Identities=13% Similarity=0.036 Sum_probs=57.4
Q ss_pred ceeeeeCCcEEEecCC-CCCCCCCCCCceeeEeeecCCCCceEEee-cCCceEEEEeCCCCEEEecCCCCCCCccccCCC
Q 021363 13 KMEECKETVVYMWGYL-PGTSPEKSPILSPIPARLCGGDSWKDVCG-GGCGFALATSESGKLITWGSADDEGQSYLTSGK 90 (313)
Q Consensus 13 ~~~l~~~g~vy~wG~n-~G~lg~~~~~~~p~pv~~~~~~~i~~i~~-~g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~~ 90 (313)
-+.++++|-|-.-.-. .+ ...+....+..++.+.. -...+.+++|+.|++|..-.. +.-. ....
T Consensus 5 ~v~lT~~G~iKr~~~~~~~----------~~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~-elp~---~r~~ 70 (256)
T 1zvt_A 5 TIVLSQMGWVRSAKGHDID----------APGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPI-TLPS---ARGQ 70 (256)
T ss_dssp EEEEETTSEEEEEESSCCC----------STTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGG-GSCC---SSSC
T ss_pred EEEEeCCCEEEEeeCCcCC----------ceeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHH-HCCC---cCCC
Confidence 4567788877544321 11 11222334445544432 244578999999999999876 3211 1111
Q ss_pred CCCCCcccCCCCCCcEEEEeec--CceeEEEecCCcEEEec
Q 021363 91 HGETPEPFPLPTEASVVKAAAG--WAHCVSVTEAGEVYTWG 129 (313)
Q Consensus 91 ~~~~p~~i~~~~~~~i~~Is~G--~~hs~~lt~~G~vy~wG 129 (313)
-......+.+..+.+|+.+... ..+.+++|++|.+.-.-
T Consensus 71 G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~ 111 (256)
T 1zvt_A 71 GEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCT 111 (256)
T ss_dssp CEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEE
T ss_pred CeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeE
Confidence 1111123445556788888763 44577888999877653
No 24
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=52.42 E-value=1.2e+02 Score=26.68 Aligned_cols=66 Identities=12% Similarity=0.135 Sum_probs=40.7
Q ss_pred CCceEEeecCCceEEEEeCCCCEEEecCCCCCCCccccCCCCCCCCcccCCCCCCcEEEEeecCceeEEEecCCcEEEec
Q 021363 50 DSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129 (313)
Q Consensus 50 ~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~~~~~~p~~i~~~~~~~i~~Is~G~~hs~~lt~~G~vy~wG 129 (313)
..|..++. ..+..+.-..||.|+.|-.. . +++- ..+ ......|..++......+.-..||.|+.|=
T Consensus 160 ~~v~~~~~-~~~~l~s~~~dg~i~vwd~~-~-~~~~----------~~~-~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd 225 (445)
T 2ovr_B 160 GGVWSSQM-RDNIIISGSTDRTLKVWNAE-T-GECI----------HTL-YGHTSTVRCMHLHEKRVVSGSRDATLRVWD 225 (445)
T ss_dssp SCEEEEEE-ETTEEEEEETTSCEEEEETT-T-TEEE----------EEE-CCCSSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred CCEEEEEe-cCCEEEEEeCCCeEEEEECC-c-CcEE----------EEE-CCCCCcEEEEEecCCEEEEEeCCCEEEEEE
Confidence 34555554 22455666789999999765 2 2210 001 112345777777777777778899999984
No 25
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=50.68 E-value=74 Score=30.47 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=14.7
Q ss_pred CCeEEEEeCCCCEEEEeC
Q 021363 221 GRHTLILSDMGQVWGWGY 238 (313)
Q Consensus 221 ~~h~~al~~~G~vy~wG~ 238 (313)
.+|++++..+|+||++|-
T Consensus 288 ~~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 288 GYQSSATMSDGRVFTIGG 305 (656)
T ss_dssp SSCEEEECTTSCEEEECC
T ss_pred cccceEEecCCeEEEEeC
Confidence 467878777899999985
No 26
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=50.26 E-value=1.4e+02 Score=26.63 Aligned_cols=84 Identities=14% Similarity=-0.015 Sum_probs=48.3
Q ss_pred eeecCCCCceEEee-cCCceEEEEeCCCCEEEecCCCCCCCccccCCCCCCCCcccCCCCCCcEEEEeec-----CceeE
Q 021363 44 ARLCGGDSWKDVCG-GGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG-----WAHCV 117 (313)
Q Consensus 44 v~~~~~~~i~~i~~-~g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~~~~~~p~~i~~~~~~~i~~Is~G-----~~hs~ 117 (313)
+....+..++.+.. .+..+.+++|+.|++|.+-.. +--..+... .-......+++..+.+|+.+..- ..+.+
T Consensus 40 ~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~-eip~~~r~a-~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll 117 (370)
T 3l6v_A 40 ASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVH-QLPEAGSNA-RGRPIINWIPLESGERVQAVLPVREYADNRYVF 117 (370)
T ss_dssp EECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGG-GSCBCCTTS-CCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEE
T ss_pred cccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHH-HCcCCCccc-CCcCHhhccCCCCCCEEEEEEEeccCCCCcEEE
Confidence 34444555554433 244468889999999998765 322221110 00111122344557788887664 34688
Q ss_pred EEecCCcEEEec
Q 021363 118 SVTEAGEVYTWG 129 (313)
Q Consensus 118 ~lt~~G~vy~wG 129 (313)
++|++|.+.-.-
T Consensus 118 ~~T~~G~vKrt~ 129 (370)
T 3l6v_A 118 MATRNGTVKKTP 129 (370)
T ss_dssp EEETTSEEEEEE
T ss_pred EEeCCCeEEEeE
Confidence 889999887654
No 27
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=48.54 E-value=1.1e+02 Score=24.95 Aligned_cols=68 Identities=18% Similarity=0.058 Sum_probs=37.1
Q ss_pred CCCceEEeecCCceEEEEeCCCCEEEecCCCCCCCccccCCCCCCCCcccCCCCCCcEEEEeecCc-eeEEEecCCcEEE
Q 021363 49 GDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWA-HCVSVTEAGEVYT 127 (313)
Q Consensus 49 ~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~~~~~~p~~i~~~~~~~i~~Is~G~~-hs~~lt~~G~vy~ 127 (313)
...+..++....+..++...+|.|+.|-.. . +++ ..........|..++...+ ..++-..+|.|+.
T Consensus 184 ~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~-~-~~~-----------~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~i 250 (313)
T 3odt_A 184 NDVVRHLAVVDDGHFISCSNDGLIKLVDMH-T-GDV-----------LRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRI 250 (313)
T ss_dssp SSCEEEEEEEETTEEEEEETTSEEEEEETT-T-CCE-----------EEEEECCSSCEEEEEECTTSCEEEEETTSEEEE
T ss_pred cccEEEEEEcCCCeEEEccCCCeEEEEECC-c-hhh-----------hhhhhcCCceEEEEEEecCCCEEEEecCCEEEE
Confidence 344555544233345556788999999875 2 221 0000112345666665433 4555567888888
Q ss_pred ec
Q 021363 128 WG 129 (313)
Q Consensus 128 wG 129 (313)
|-
T Consensus 251 wd 252 (313)
T 3odt_A 251 WS 252 (313)
T ss_dssp EC
T ss_pred EE
Confidence 85
No 28
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=46.71 E-value=1.4e+02 Score=25.66 Aligned_cols=68 Identities=12% Similarity=0.086 Sum_probs=41.0
Q ss_pred CCceEEEEeCCCCEEEecCCCCCCCccccCCCCCCCCcccCCCCCCcEEEEee-----cCceeEEEecCCcEEEe
Q 021363 59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAA-----GWAHCVSVTEAGEVYTW 128 (313)
Q Consensus 59 g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~~~~~~p~~i~~~~~~~i~~Is~-----G~~hs~~lt~~G~vy~w 128 (313)
...+.+++|+.|++|..-.. +--..+... .-......+.+..+.+|+.+.. .+.+.+++|++|.+.-.
T Consensus 52 ~~~~ll~fT~~G~~~~~~~~-elp~~~~~a-~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt 124 (307)
T 1zi0_A 52 THDHILCFSSRGRVYSMKVY-QLPEATRGA-RGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKT 124 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGG-GSCCCCSSS-CCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEE
T ss_pred CCCEEEEEECCCEEEEEEhh-HCcCCCCCC-CCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEE
Confidence 55578999999999998776 322222110 0011112334455677887754 23457778999987764
No 29
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=44.62 E-value=2.3e+02 Score=27.45 Aligned_cols=65 Identities=18% Similarity=0.154 Sum_probs=33.3
Q ss_pred ceEEEEeC-CCCEEEecCCCCCCCccccCCCC--CCCCcccCCCCCCcEEEEeecCceeEEEecCCcEEEecCC
Q 021363 61 GFALATSE-SGKLITWGSADDEGQSYLTSGKH--GETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWR 131 (313)
Q Consensus 61 ~h~~~lt~-~G~vy~wG~n~~~Gqlg~~~~~~--~~~p~~i~~~~~~~i~~Is~G~~hs~~lt~~G~vy~wG~n 131 (313)
.|+++... +|++|.+|-....+.. ..+... ...-+...+.. .+ ..-..|++++..+|+||.+|..
T Consensus 442 ~hs~~~~~~~~~lyv~GG~~~~~~~-~~dv~~yd~~t~~W~~~~~-~p----~~R~~h~~~~~~~~~iyv~GG~ 509 (695)
T 2zwa_A 442 CHTFTTISRNNQLLLIGGRKAPHQG-LSDNWIFDMKTREWSMIKS-LS----HTRFRHSACSLPDGNVLILGGV 509 (695)
T ss_dssp SCEEEEETTTTEEEEECCBSSTTCB-CCCCEEEETTTTEEEECCC-CS----BCCBSCEEEECTTSCEEEECCB
T ss_pred ceEEEEEccCCEEEEEcCCCCCCCc-cccEEEEeCCCCcEEECCC-CC----CCcccceEEEEcCCEEEEECCC
Confidence 48888776 8999999865111111 000000 00000111100 00 1336788887669999999843
No 30
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=44.24 E-value=49 Score=31.76 Aligned_cols=58 Identities=19% Similarity=0.298 Sum_probs=32.2
Q ss_pred EEEEeCCCCEEEecCCCCCCCccccCCCCCCCCcccCCCCCCcEEEEe-ecCceeEEEecCCcEEEecC
Q 021363 63 ALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAA-AGWAHCVSVTEAGEVYTWGW 130 (313)
Q Consensus 63 ~~~lt~~G~vy~wG~n~~~Gqlg~~~~~~~~~p~~i~~~~~~~i~~Is-~G~~hs~~lt~~G~vy~wG~ 130 (313)
++++..+|+||.+|-. +...+-.-+.. .-+..++. .+. .-..|++++..+|+||++|.
T Consensus 247 ~~~~~~~g~lyv~GG~-~~~~v~~yd~~---t~~W~~~~------~~~~~R~~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 247 GISMDGNGQIVVTGGN-DAKKTSLYDSS---SDSWIPGP------DMQVARGYQSSATMSDGRVFTIGG 305 (656)
T ss_dssp EEEECTTSCEEEECSS-STTCEEEEEGG---GTEEEECC------CCSSCCSSCEEEECTTSCEEEECC
T ss_pred cccCCCCCCEEEeCCC-CCCceEEecCc---CCceeECC------CCCccccccceEEecCCeEEEEeC
Confidence 4677889999999975 22211100000 00001111 111 23578888887999999996
No 31
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=40.42 E-value=2.8e+02 Score=27.24 Aligned_cols=76 Identities=16% Similarity=0.167 Sum_probs=44.6
Q ss_pred CCCceEEee-cCCceEEEEeCCCCEEEecCCCCCCCccccCCCCCCCCcccCCCCCCcEEEEeec--CceeEEEecCCcE
Q 021363 49 GDSWKDVCG-GGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG--WAHCVSVTEAGEV 125 (313)
Q Consensus 49 ~~~i~~i~~-~g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~~~~~~p~~i~~~~~~~i~~Is~G--~~hs~~lt~~G~v 125 (313)
+..+..+.. ....+.+++|+.|++|..-.. +.-. ....-......+.+..+.+|+.+.+. ..+.++.|++|.+
T Consensus 502 ~D~~~~~~~~~t~d~ll~ft~~Gr~y~~~~~-~lP~---~~~~G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~v 577 (716)
T 1zvu_A 502 GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPI-TLPS---ARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYG 577 (716)
T ss_dssp ---CCEEECCCSSSCEEEEETTSEEEEECTT-TSCC---CC---CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEE
T ss_pred CCeEEEEEEecCCCEEEEEecCCcEEEEEee-eccc---ccccCeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCceE
Confidence 334444433 233458889999999988776 3211 11122233344555667888888776 4456777888888
Q ss_pred EEe
Q 021363 126 YTW 128 (313)
Q Consensus 126 y~w 128 (313)
+-.
T Consensus 578 k~~ 580 (716)
T 1zvu_A 578 FVC 580 (716)
T ss_dssp EEE
T ss_pred EEe
Confidence 754
No 32
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=39.93 E-value=1.8e+02 Score=25.00 Aligned_cols=114 Identities=15% Similarity=0.166 Sum_probs=63.3
Q ss_pred ccceeeeeCCcEEEecCCC----CCCCCCCCCceeeEeeecCCCCceEEeecC----CceEEEEeCCCCEEEecCCCCCC
Q 021363 11 NEKMEECKETVVYMWGYLP----GTSPEKSPILSPIPARLCGGDSWKDVCGGG----CGFALATSESGKLITWGSADDEG 82 (313)
Q Consensus 11 ~~~~~l~~~g~vy~wG~n~----G~lg~~~~~~~p~pv~~~~~~~i~~i~~~g----~~h~~~lt~~G~vy~wG~n~~~G 82 (313)
+.-+++|++|.+|.+-..+ ++...+... ...+++..+..|+.+...- ..+.+++|++|.++..-.. ++-
T Consensus 59 ~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i--~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~-~~~ 135 (312)
T 1suu_A 59 DYLFMISNEGKLYLINAYEIKDSSRASKGQNI--SELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFEST-DFK 135 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCC-------CBG--GGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGG-GGC
T ss_pred CEEEEEECCCeEEEEEHHHCCCCCccCCCcCh--hhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHH-Hhh
Confidence 3467778888888886541 222212111 1123345577787776532 2368889999999998765 331
Q ss_pred CccccCCCCCCCCcccCCCCCCcEEEEe--ecCceeEEEecCCcEEEecCCCC
Q 021363 83 QSYLTSGKHGETPEPFPLPTEASVVKAA--AGWAHCVSVTEAGEVYTWGWREC 133 (313)
Q Consensus 83 qlg~~~~~~~~~p~~i~~~~~~~i~~Is--~G~~hs~~lt~~G~vy~wG~n~~ 133 (313)
.. .+.+ -..+.+..+.+++.+. .+..+.+++|++|.+.-+-..+.
T Consensus 136 ~~-r~~G-----~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev 182 (312)
T 1suu_A 136 AV-KSRG-----VIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDV 182 (312)
T ss_dssp C-----C-----EECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGS
T ss_pred cc-CCCc-----EEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHc
Confidence 11 0000 0112333345555544 35678899999999888765443
No 33
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A
Probab=38.31 E-value=98 Score=23.16 Aligned_cols=75 Identities=12% Similarity=-0.002 Sum_probs=40.8
Q ss_pred CCceeeEeeecCCCCceEEeecCCceEEEEeCCCCEEEecCCCCCCCccccCCCCCCCCcccCC-CCCCcEEEEeecCce
Q 021363 37 PILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPL-PTEASVVKAAAGWAH 115 (313)
Q Consensus 37 ~~~~p~pv~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~~~~~~p~~i~~-~~~~~i~~Is~G~~h 115 (313)
..++..++.. .++.|-..-.++-+++..+|+||.--.. + ..+ .....+.. .....|+.+..|.
T Consensus 38 s~l~~~~v~~----G~V~I~g~~sg~yL~m~~~G~v~Gs~~~-s-~ec--------~flE~~~~~~g~v~ikg~~sg~-- 101 (132)
T 3q7x_A 38 IQFQISPEGN----GEVLLRSTETGQFLRINPDGTVDGTRDR-S-DPG--------IQFQISPEGNGEVLLRSTETGQ-- 101 (132)
T ss_dssp GCEEEEEEET----TEEEEEETTTCCEEEECTTSBEEEECC--C-CGG--------GCEEEEEEETTEEEEEETTTCC--
T ss_pred cEEEEEeccc----CEEEEEEEcccEEEEECCCCCEeeccCC-C-CCc--------eeEEEEeecCcEEEEEeccCCe--
Confidence 3455566643 4666654445577899999999974332 0 011 01111111 1112344444444
Q ss_pred eEEEecCCcEEE
Q 021363 116 CVSVTEAGEVYT 127 (313)
Q Consensus 116 s~~lt~~G~vy~ 127 (313)
-++++.+|++|.
T Consensus 102 YLamnk~G~lyg 113 (132)
T 3q7x_A 102 FLRINPDGTVDG 113 (132)
T ss_dssp EEEECTTSBEEE
T ss_pred EEEECCCCcCcC
Confidence 788999999996
No 34
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=37.72 E-value=2e+02 Score=24.88 Aligned_cols=98 Identities=15% Similarity=0.069 Sum_probs=57.1
Q ss_pred ceeeeeCCcEEEecCCCCCCCCCCCCceeeEeeecCCCCceEEeecCCc-eEEEEeCCCCEEEecCCCCCCCccccCCCC
Q 021363 13 KMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCG-FALATSESGKLITWGSADDEGQSYLTSGKH 91 (313)
Q Consensus 13 ~~~l~~~g~vy~wG~n~G~lg~~~~~~~p~pv~~~~~~~i~~i~~~g~~-h~~~lt~~G~vy~wG~n~~~Gqlg~~~~~~ 91 (313)
.+....+|.|+.|-...|.. ...........|..++-...+ +.++-+.+|.|+.|-.. . ++.
T Consensus 106 l~~~~~d~~v~lw~~~~~~~--------~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~-~-~~~------- 168 (401)
T 4aez_A 106 VVAVALERNVYVWNADSGSV--------SALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE-S-QTK------- 168 (401)
T ss_dssp EEEEEETTEEEEEETTTCCE--------EEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT-T-CCE-------
T ss_pred EEEEECCCeEEEeeCCCCcE--------eEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc-C-CeE-------
Confidence 45566789999997644321 111222224456666542222 44556678999999765 2 211
Q ss_pred CCCCcccCCCCCCcEEEEeecCceeEEEecCCcEEEecCC
Q 021363 92 GETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWR 131 (313)
Q Consensus 92 ~~~p~~i~~~~~~~i~~Is~G~~hs~~lt~~G~vy~wG~n 131 (313)
...+ ......|..++......+.-..+|.|+.|-..
T Consensus 169 ---~~~~-~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~ 204 (401)
T 4aez_A 169 ---LRTM-AGHQARVGCLSWNRHVLSSGSRSGAIHHHDVR 204 (401)
T ss_dssp ---EEEE-CCCSSCEEEEEEETTEEEEEETTSEEEEEETT
T ss_pred ---EEEe-cCCCCceEEEEECCCEEEEEcCCCCEEEEecc
Confidence 0011 12235677888777777777789999999644
No 35
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=36.67 E-value=1.9e+02 Score=24.34 Aligned_cols=27 Identities=4% Similarity=-0.010 Sum_probs=17.7
Q ss_pred CcEEEEeecC----ceeEEEecCCcEEEecC
Q 021363 104 ASVVKAAAGW----AHCVSVTEAGEVYTWGW 130 (313)
Q Consensus 104 ~~i~~Is~G~----~hs~~lt~~G~vy~wG~ 130 (313)
.+|..++... .+.+.-..||.|..|=.
T Consensus 126 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~ 156 (343)
T 3lrv_A 126 NEIIYMYGHNEVNTEYFIWADNRGTIGFQSY 156 (343)
T ss_dssp SCEEEEECCC---CCEEEEEETTCCEEEEES
T ss_pred CCEEEEEcCCCCCCCEEEEEeCCCcEEEEEC
Confidence 4577776643 34444667899999854
No 36
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=34.56 E-value=2.1e+02 Score=24.14 Aligned_cols=103 Identities=16% Similarity=0.053 Sum_probs=62.6
Q ss_pred cceeeeeCCcEEEecCC---CCCCCCCCCCceeeEeeecCCCCceEEeecC---CceEEEEeCCCCEEEecCCCCCCCcc
Q 021363 12 EKMEECKETVVYMWGYL---PGTSPEKSPILSPIPARLCGGDSWKDVCGGG---CGFALATSESGKLITWGSADDEGQSY 85 (313)
Q Consensus 12 ~~~~l~~~g~vy~wG~n---~G~lg~~~~~~~p~pv~~~~~~~i~~i~~~g---~~h~~~lt~~G~vy~wG~n~~~Gqlg 85 (313)
..++.|++|++|.--.. .+. +. . + +..+.+|+.+.+ . ..+.+++|.+|.+...-.. ++-+-
T Consensus 37 ~ll~fT~~G~v~~~~~~~lp~~~-~~--~------l-l~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~-~~~~~- 103 (276)
T 3no0_A 37 GLFLVSNRGRVYWIAGSQALQGS-KV--S------L-KSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLA-EFEYK- 103 (276)
T ss_dssp CEEEEETTSEEEEECSHHHHTSE-EC--C------C-SSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGG-GTTTC-
T ss_pred EEEEEcCCCeEEEEEhhhCccCc-cc--c------c-CCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHH-Hhhhh-
Confidence 36678888999877543 110 00 0 3 556788888865 3 2368889999999887655 33210
Q ss_pred ccCCCCCCCCcccCCCCCCcEEEEe--ecCceeEEEecCCcEEEecCCCC
Q 021363 86 LTSGKHGETPEPFPLPTEASVVKAA--AGWAHCVSVTEAGEVYTWGWREC 133 (313)
Q Consensus 86 ~~~~~~~~~p~~i~~~~~~~i~~Is--~G~~hs~~lt~~G~vy~wG~n~~ 133 (313)
. .-...+.+..+..++.+. .+.++.+++|++|++|.+-..+.
T Consensus 104 ----~--~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~ei 147 (276)
T 3no0_A 104 ----A--QGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREV 147 (276)
T ss_dssp ----S--TTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGS
T ss_pred ----c--CCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhC
Confidence 0 011122333344455443 35667999999999999865444
No 37
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=33.05 E-value=2e+02 Score=23.60 Aligned_cols=75 Identities=11% Similarity=0.043 Sum_probs=37.1
Q ss_pred CCceEEeecCCceEEEEeCCCCEEEecCCCCCCCccccCCCCCCCCcccCCCCCCcEEEEeecC--ceeEEEecCCcEEE
Q 021363 50 DSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGW--AHCVSVTEAGEVYT 127 (313)
Q Consensus 50 ~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~~~~~~p~~i~~~~~~~i~~Is~G~--~hs~~lt~~G~vy~ 127 (313)
..+..++....++.++...|+.|+.|-.. . +++-... .... ...........|..++... .+.+.-..||.|+.
T Consensus 257 ~~v~~~~~~~~~~~~~~~~d~~i~iwd~~-~-~~~~~~~-~~~~-~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~i 332 (340)
T 4aow_A 257 DIINALCFSPNRYWLCAATGPSIKIWDLE-G-KIIVDEL-KQEV-ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV 332 (340)
T ss_dssp SCEEEEEECSSSSEEEEEETTEEEEEETT-T-TEEEEEE-CCC--------CCCCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ceEEeeecCCCCceeeccCCCEEEEEECC-C-CeEEEec-cccc-eeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 34555554333466667788999999764 1 2211100 0000 0000011234566666543 34455567899998
Q ss_pred e
Q 021363 128 W 128 (313)
Q Consensus 128 w 128 (313)
|
T Consensus 333 W 333 (340)
T 4aow_A 333 W 333 (340)
T ss_dssp E
T ss_pred E
Confidence 8
No 38
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=30.66 E-value=2.7e+02 Score=24.31 Aligned_cols=27 Identities=7% Similarity=-0.054 Sum_probs=19.2
Q ss_pred cEEEEeeCCCeEEEEeCCCCEEEEeCC
Q 021363 213 KITKVAAGGRHTLILSDMGQVWGWGYG 239 (313)
Q Consensus 213 ~i~~I~~G~~h~~al~~~G~vy~wG~n 239 (313)
.+..++......++-..+|.|..|=..
T Consensus 321 ~v~~~~~~~~~l~~~~~dg~i~vwd~~ 347 (445)
T 2ovr_B 321 LTSGMELKDNILVSGNADSTVKIWDIK 347 (445)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred cEEEEEEeCCEEEEEeCCCeEEEEECC
Confidence 455555556667777789999999654
No 39
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=30.05 E-value=2.2e+02 Score=23.00 Aligned_cols=58 Identities=10% Similarity=-0.013 Sum_probs=34.7
Q ss_pred eEEEEeCCCCEEEecCCCCCCCccccCCCCCCCCcccCCCCCCcEEEEeecCceeEEEecCCcEEEec
Q 021363 62 FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129 (313)
Q Consensus 62 h~~~lt~~G~vy~wG~n~~~Gqlg~~~~~~~~~p~~i~~~~~~~i~~Is~G~~hs~~lt~~G~vy~wG 129 (313)
+.+.-..+|.++.|-.. +... ..+..........|..++......+.-..+|.|+.|=
T Consensus 73 ~l~~~~~dg~i~~~~~~-~~~~---------~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d 130 (313)
T 3odt_A 73 LLLFGGKDTMINGVPLF-ATSG---------EDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK 130 (313)
T ss_dssp EEEEEETTSCEEEEETT-CCTT---------SCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred EEEEecCCCeEEEEEee-ecCC---------CCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc
Confidence 44555677888877665 2110 0111111123456778888777777788899999994
No 40
>3snv_A Symfoil-4T/permutation #1 synthetic protein; beta-trefoil, de novo protein; 2.20A {Homo sapiens}
Probab=28.92 E-value=1.9e+02 Score=21.89 Aligned_cols=74 Identities=12% Similarity=0.043 Sum_probs=41.1
Q ss_pred CCceeeEeeecCCCCceEEeecCCceEEEEeCCCCEEEecCCCCCCCccccCCCCCCCC-cccCCCC-CCcEEEEeecCc
Q 021363 37 PILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETP-EPFPLPT-EASVVKAAAGWA 114 (313)
Q Consensus 37 ~~~~p~pv~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~~~~~~p-~~i~~~~-~~~i~~Is~G~~ 114 (313)
..++..++.. .++.|-+...++-+++..+|+||.--.. . ..... ..+..-. ...|..+..|
T Consensus 41 s~l~~~sv~~----G~V~I~gv~sg~yL~m~~~G~v~Gs~~~-~----------~ec~flE~~~e~~g~v~i~~~~sg-- 103 (143)
T 3snv_A 41 IQFQISPEGN----GEVLLKSTETGQYLRINPDGTVDGTRDR-S----------DTHIQFQISPEGNGEVLLKSTETG-- 103 (143)
T ss_dssp SEEEEEEEET----TEEEEEETTTTEEEEECTTSBEEEECCT-T----------CTTSEEEEEECSTTEEEEEETTTC--
T ss_pred eEEEEEeccC----CeEEEEEEcccEEEeECCCCCEeecccC-C----------CcceEEEEEecCCcEEEEEEeeCC--
Confidence 3455555543 4666665455678999999999974332 0 01111 1111111 1234444344
Q ss_pred eeEEEecCCcEEE
Q 021363 115 HCVSVTEAGEVYT 127 (313)
Q Consensus 115 hs~~lt~~G~vy~ 127 (313)
.-+|++.+|++|.
T Consensus 104 ~Ylamnk~Grl~G 116 (143)
T 3snv_A 104 QYLRINPDGTVDG 116 (143)
T ss_dssp CEEEECTTSBEEE
T ss_pred EEEEEcCCCcCcC
Confidence 5789999999964
No 41
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=28.73 E-value=2.9e+02 Score=26.62 Aligned_cols=19 Identities=11% Similarity=0.277 Sum_probs=14.8
Q ss_pred CceEEEEeCCCCEEEecCC
Q 021363 60 CGFALATSESGKLITWGSA 78 (313)
Q Consensus 60 ~~h~~~lt~~G~vy~wG~n 78 (313)
..|++++-.+|+||.+|-.
T Consensus 491 ~~h~~~~~~~~~iyv~GG~ 509 (695)
T 2zwa_A 491 FRHSACSLPDGNVLILGGV 509 (695)
T ss_dssp BSCEEEECTTSCEEEECCB
T ss_pred ccceEEEEcCCEEEEECCC
Confidence 3587777668999999865
No 42
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=26.01 E-value=1.5e+02 Score=26.54 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=20.2
Q ss_pred EEEEeecCceeEEEecCCcEEEecCCC
Q 021363 106 VVKAAAGWAHCVSVTEAGEVYTWGWRE 132 (313)
Q Consensus 106 i~~Is~G~~hs~~lt~~G~vy~wG~n~ 132 (313)
|..|++ +.-.+++..+|.|..|=-..
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~s 115 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEE 115 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSS
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchh
Confidence 889999 77777777888888885433
No 43
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=24.73 E-value=2.8e+02 Score=22.39 Aligned_cols=18 Identities=6% Similarity=-0.066 Sum_probs=12.0
Q ss_pred eEEEEeCCCCEEEEeCCC
Q 021363 223 HTLILSDMGQVWGWGYGG 240 (313)
Q Consensus 223 h~~al~~~G~vy~wG~n~ 240 (313)
..++++.+|++|+-....
T Consensus 210 ~~i~~d~~G~l~v~~~~~ 227 (286)
T 1q7f_A 210 IGVGINSNGEILIADNHN 227 (286)
T ss_dssp EEEEECTTCCEEEEECSS
T ss_pred cEEEECCCCCEEEEeCCC
Confidence 456777778888776543
No 44
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=24.11 E-value=2e+02 Score=29.43 Aligned_cols=100 Identities=17% Similarity=0.206 Sum_probs=0.0
Q ss_pred eeCCcEEEecCCCCCCCCCCCCceeeEeeecCCCCceEEeecCCceEEEEeCCCCEEEecCCCCCCCccccCCCCCCCCc
Q 021363 17 CKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPE 96 (313)
Q Consensus 17 ~~~g~vy~wG~n~G~lg~~~~~~~p~pv~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~~~~~~p~ 96 (313)
..+|.|+.|-...|..-..................|..++. ..+-..+++.+|.|+.|-.. .......
T Consensus 1146 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~f-s~dg~~l~s~~g~v~vwd~~-----------~g~~~~~ 1213 (1249)
T 3sfz_A 1146 DDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCF-SPDSKTLVSAGGYLKWWNVA-----------TGDSSQT 1213 (1249)
T ss_dssp ETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEE-CTTSSCEEEESSSEEEBCSS-----------SCBCCCC
T ss_pred eCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEE-CCCCCEEEECCCeEEEEECC-----------CCceeee
Q ss_pred ccCCCCCCcEEEEeecCceeEEEecCCcEEEe
Q 021363 97 PFPLPTEASVVKAAAGWAHCVSVTEAGEVYTW 128 (313)
Q Consensus 97 ~i~~~~~~~i~~Is~G~~hs~~lt~~G~vy~w 128 (313)
.........-..++....+.+..+.+|.|+.|
T Consensus 1214 ~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw 1245 (1249)
T 3sfz_A 1214 FYTNGTNLKKIHVSPDFRTYVTVDNLGILYIL 1245 (1249)
T ss_dssp CCCSSCCCCCCEECSSSCCEEEECTTCCEEEE
T ss_pred eeccCCcccEEEECCCCCEEEEecCCcEEEEE
No 45
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=23.39 E-value=3.7e+02 Score=23.44 Aligned_cols=69 Identities=14% Similarity=0.068 Sum_probs=41.5
Q ss_pred CCceEEeecCC-ceEEEEeCCCCEEEecCCCCCCCccccCCCCCCCCcccCCCCCCcEEEEeecCceeEEEecCCcEEEe
Q 021363 50 DSWKDVCGGGC-GFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTW 128 (313)
Q Consensus 50 ~~i~~i~~~g~-~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~~~~~~p~~i~~~~~~~i~~Is~G~~hs~~lt~~G~vy~w 128 (313)
..|..++.... .+.+.-+.||.|+.|-.. . +++- .........|..++....+.+.-..||.|..|
T Consensus 311 ~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~-~-~~~~-----------~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vw 377 (464)
T 3v7d_B 311 DRIYSTIYDHERKRCISASMDTTIRIWDLE-N-GELM-----------YTLQGHTALVGLLRLSDKFLVSAAADGSIRGW 377 (464)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETT-T-TEEE-----------EEECCCSSCEEEEEECSSEEEEEETTSEEEEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECC-C-CcEE-----------EEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEE
Confidence 34555544222 245556778999999764 1 2210 00011235577777777888888899999999
Q ss_pred cCC
Q 021363 129 GWR 131 (313)
Q Consensus 129 G~n 131 (313)
=..
T Consensus 378 d~~ 380 (464)
T 3v7d_B 378 DAN 380 (464)
T ss_dssp ETT
T ss_pred ECC
Confidence 543
No 46
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=20.58 E-value=3.9e+02 Score=22.56 Aligned_cols=140 Identities=13% Similarity=0.051 Sum_probs=0.0
Q ss_pred ccccceeeeeCCcEEEecCCCCCCCCCCCCceeeEeeecCCCC---------------ceEEeecCCceEEEEeCCCCEE
Q 021363 9 EENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDS---------------WKDVCGGGCGFALATSESGKLI 73 (313)
Q Consensus 9 ~~~~~~~l~~~g~vy~wG~n~G~lg~~~~~~~p~pv~~~~~~~---------------i~~i~~~g~~h~~~lt~~G~vy 73 (313)
+....+....+|.|+.|-. ............... +..++....+..++.+.+|.|+
T Consensus 160 ~~~~l~~~~~d~~i~iwd~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~ 230 (425)
T 1r5m_A 160 DGTHIISMDVENVTILWNV---------ISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIF 230 (425)
T ss_dssp TSSEEEEEETTCCEEEEET---------TTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEE
T ss_pred CCCEEEEEecCCeEEEEEC---------CCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEE
Q ss_pred EecCCCCCCCccccCCCCCCCCcccCCCCCCcEEEEeecCceeEEEecCCcEEEecCCCCCCCCcccccCCCCCccccCC
Q 021363 74 TWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDS 153 (313)
Q Consensus 74 ~wG~n~~~Gqlg~~~~~~~~~p~~i~~~~~~~i~~Is~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~ 153 (313)
.|-.. ................-..++....+.+.-..+|.|+.|-...
T Consensus 231 ~~d~~-----------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~--------------------- 278 (425)
T 1r5m_A 231 VYQIT-----------EKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN--------------------- 278 (425)
T ss_dssp EEETT-----------CSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS---------------------
T ss_pred EEEcC-----------CCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC---------------------
Q ss_pred CCCCCCCCccCCCCCCccccceeeeceeeeccCCCCCCCCCCCcceeecceeeecCCCCcEEEEeeCCC-eEEEEeCCCC
Q 021363 154 TGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGR-HTLILSDMGQ 232 (313)
Q Consensus 154 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~-h~~al~~~G~ 232 (313)
..+...-......|..++.... ..++...+|.
T Consensus 279 -----------------------------------------------~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~ 311 (425)
T 1r5m_A 279 -----------------------------------------------GNSQNCFYGHSQSIVSASWVGDDKVISCSMDGS 311 (425)
T ss_dssp -----------------------------------------------BSCSEEECCCSSCEEEEEEETTTEEEEEETTSE
T ss_pred -----------------------------------------------CccceEecCCCccEEEEEECCCCEEEEEeCCCc
Q ss_pred EEEE
Q 021363 233 VWGW 236 (313)
Q Consensus 233 vy~w 236 (313)
|+.|
T Consensus 312 i~i~ 315 (425)
T 1r5m_A 312 VRLW 315 (425)
T ss_dssp EEEE
T ss_pred EEEE
No 47
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=20.47 E-value=3.5e+02 Score=21.96 Aligned_cols=66 Identities=12% Similarity=0.024 Sum_probs=34.5
Q ss_pred CceEEeecCCc-eEEEEeCCCCEEEecCCCCCCCccccCCCCCCCCcccCCCCCCcEEEEeec--CceeEEEecCCcEEE
Q 021363 51 SWKDVCGGGCG-FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG--WAHCVSVTEAGEVYT 127 (313)
Q Consensus 51 ~i~~i~~~g~~-h~~~lt~~G~vy~wG~n~~~Gqlg~~~~~~~~~p~~i~~~~~~~i~~Is~G--~~hs~~lt~~G~vy~ 127 (313)
.+..++....+ +.++-+.+|.|+.|-.. . +.. ..+ ......|..++.. ..+.+....+|.|+.
T Consensus 226 ~v~~~~~s~~~~~l~~~~~~~~i~~~~~~-~-~~~-----------~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 291 (337)
T 1gxr_A 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVN-K-PDK-----------YQL-HLHESCVLSLKFAYCGKWFVSTGKDNLLNA 291 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETT-S-SCE-----------EEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECC-C-CCe-----------EEE-cCCccceeEEEECCCCCEEEEecCCCcEEE
Confidence 45555431222 44445667888888765 2 111 001 1123456666554 445555567888888
Q ss_pred ecC
Q 021363 128 WGW 130 (313)
Q Consensus 128 wG~ 130 (313)
|-.
T Consensus 292 ~~~ 294 (337)
T 1gxr_A 292 WRT 294 (337)
T ss_dssp EET
T ss_pred EEC
Confidence 853
No 48
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=20.23 E-value=3.9e+02 Score=22.43 Aligned_cols=18 Identities=22% Similarity=0.667 Sum_probs=11.3
Q ss_pred eEEEEeCCCCEEEEeCCC
Q 021363 223 HTLILSDMGQVWGWGYGG 240 (313)
Q Consensus 223 h~~al~~~G~vy~wG~n~ 240 (313)
+.++++.+|++|+-..+.
T Consensus 175 ~~i~~~~dG~l~v~~~~~ 192 (328)
T 3dsm_A 175 TSLVMDKYNKMWTITDGG 192 (328)
T ss_dssp CCCEECTTSEEEEEBCCB
T ss_pred cceEEcCCCCEEEEECCC
Confidence 556667777777665543
Done!