Query 021367
Match_columns 313
No_of_seqs 297 out of 1486
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 03:07:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021367.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021367hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2da3_A Alpha-fetoprotein enhan 99.7 1.5E-18 5.1E-23 133.3 3.9 62 55-116 15-76 (80)
2 2cue_A Paired box protein PAX6 99.7 3.3E-18 1.1E-22 132.1 5.8 66 54-119 4-69 (80)
3 2h1k_A IPF-1, pancreatic and d 99.7 1.7E-18 5.7E-23 128.0 3.9 61 56-116 2-62 (63)
4 2vi6_A Homeobox protein nanog; 99.7 1.1E-18 3.8E-23 128.4 2.8 61 56-116 2-62 (62)
5 2dmu_A Homeobox protein goosec 99.7 2.6E-18 8.9E-23 129.3 4.5 62 55-116 5-66 (70)
6 2dmt_A Homeobox protein BARH-l 99.7 3.5E-18 1.2E-22 132.0 5.3 62 55-116 15-76 (80)
7 2cra_A Homeobox protein HOX-B1 99.7 1.6E-18 5.4E-23 130.6 3.2 62 55-116 5-66 (70)
8 1nk2_P Homeobox protein VND; h 99.7 3.1E-18 1.1E-22 131.4 4.6 65 56-120 8-72 (77)
9 2e1o_A Homeobox protein PRH; D 99.7 3.6E-18 1.2E-22 128.6 4.7 62 55-116 5-66 (70)
10 2dmq_A LIM/homeobox protein LH 99.7 3.1E-18 1.1E-22 131.8 4.3 64 55-118 5-68 (80)
11 1puf_A HOX-1.7, homeobox prote 99.7 7.8E-18 2.7E-22 129.1 6.3 63 55-117 11-73 (77)
12 2da2_A Alpha-fetoprotein enhan 99.7 2.9E-18 9.8E-23 128.9 3.3 62 55-116 5-66 (70)
13 2kt0_A Nanog, homeobox protein 99.7 4.9E-18 1.7E-22 131.8 4.6 62 55-116 20-81 (84)
14 2dms_A Homeobox protein OTX2; 99.7 5.3E-18 1.8E-22 130.8 4.4 63 55-117 5-67 (80)
15 2djn_A Homeobox protein DLX-5; 99.7 3.1E-18 1E-22 129.0 2.6 63 54-116 4-66 (70)
16 3a01_A Homeodomain-containing 99.7 7.8E-18 2.7E-22 134.0 5.0 66 56-121 16-81 (93)
17 1ig7_A Homeotic protein MSX-1; 99.7 6.7E-18 2.3E-22 122.4 4.1 57 58-114 1-57 (58)
18 2hdd_A Protein (engrailed home 99.7 5.2E-18 1.8E-22 124.4 3.5 58 57-114 3-60 (61)
19 2da1_A Alpha-fetoprotein enhan 99.7 3.9E-18 1.3E-22 128.2 2.9 62 55-116 5-66 (70)
20 1wh5_A ZF-HD homeobox family p 99.7 5.7E-18 2E-22 131.6 3.9 60 55-114 15-78 (80)
21 2ecc_A Homeobox and leucine zi 99.7 5.8E-18 2E-22 131.3 3.7 59 59-117 5-63 (76)
22 1zq3_P PRD-4, homeotic bicoid 99.7 1.1E-17 3.9E-22 125.4 4.6 61 57-117 2-62 (68)
23 1yz8_P Pituitary homeobox 2; D 99.7 3.8E-18 1.3E-22 127.8 1.6 62 56-117 2-63 (68)
24 1b8i_A Ultrabithorax, protein 99.7 9.5E-18 3.2E-22 130.1 3.8 62 55-116 18-79 (81)
25 1bw5_A ISL-1HD, insulin gene e 99.7 6.1E-18 2.1E-22 125.9 2.4 60 57-116 3-62 (66)
26 2da5_A Zinc fingers and homeob 99.7 1.2E-17 4.1E-22 127.7 4.1 59 58-116 8-66 (75)
27 1ahd_P Antennapedia protein mu 99.7 8.6E-18 2.9E-22 126.2 3.1 59 58-116 3-61 (68)
28 2l7z_A Homeobox protein HOX-A1 99.7 1.8E-17 6.1E-22 126.1 4.9 61 56-116 6-66 (73)
29 1uhs_A HOP, homeodomain only p 99.7 1.6E-17 5.3E-22 125.8 4.5 58 59-116 3-61 (72)
30 1jgg_A Segmentation protein EV 99.7 1.2E-17 4.1E-22 122.1 3.7 58 58-115 2-59 (60)
31 2m0c_A Homeobox protein arista 99.7 1.3E-17 4.6E-22 126.3 3.9 62 55-116 7-68 (75)
32 2r5y_A Homeotic protein sex co 99.7 1.2E-17 4E-22 131.1 3.6 63 54-116 25-87 (88)
33 1fjl_A Paired protein; DNA-bin 99.7 2E-17 7E-22 127.8 4.8 61 56-116 17-77 (81)
34 2da4_A Hypothetical protein DK 99.7 7.8E-18 2.7E-22 129.9 2.3 61 56-116 7-71 (80)
35 3rkq_A Homeobox protein NKX-2. 99.7 1.6E-17 5.5E-22 119.7 3.8 57 57-113 2-58 (58)
36 2hi3_A Homeodomain-only protei 99.7 2.3E-17 7.8E-22 125.3 4.6 59 58-116 3-62 (73)
37 2k40_A Homeobox expressed in E 99.7 8.1E-18 2.8E-22 125.5 2.0 61 58-118 2-62 (67)
38 3a02_A Homeobox protein arista 99.7 1.3E-17 4.6E-22 121.9 3.0 57 60-116 2-58 (60)
39 1ftt_A TTF-1 HD, thyroid trans 99.7 1.9E-17 6.5E-22 124.1 3.9 60 58-117 3-62 (68)
40 3a03_A T-cell leukemia homeobo 99.7 2.2E-17 7.4E-22 119.5 3.6 54 62-115 2-55 (56)
41 1wh7_A ZF-HD homeobox family p 99.7 1.7E-17 5.7E-22 129.3 3.0 59 55-114 15-78 (80)
42 3nar_A ZHX1, zinc fingers and 99.7 2.8E-17 9.5E-22 131.2 4.4 63 56-118 24-86 (96)
43 1akh_A Protein (mating-type pr 99.7 2.2E-17 7.5E-22 120.8 2.7 57 57-113 5-61 (61)
44 1b72_A Protein (homeobox prote 99.7 3E-17 1E-21 131.2 3.7 63 55-117 32-94 (97)
45 2dn0_A Zinc fingers and homeob 99.7 2.5E-17 8.7E-22 126.0 2.8 59 58-116 9-67 (76)
46 1x2n_A Homeobox protein pknox1 99.7 5.6E-17 1.9E-21 122.9 4.5 63 55-117 5-70 (73)
47 2ly9_A Zinc fingers and homeob 99.6 4.3E-17 1.5E-21 123.6 3.6 60 57-116 6-65 (74)
48 2ecb_A Zinc fingers and homeob 99.6 3.8E-17 1.3E-21 130.0 3.2 57 60-116 14-70 (89)
49 1puf_B PRE-B-cell leukemia tra 99.6 5E-17 1.7E-21 123.2 3.4 62 58-119 2-66 (73)
50 1k61_A Mating-type protein alp 99.6 6.9E-17 2.4E-21 117.9 3.6 56 60-115 1-59 (60)
51 1b72_B Protein (PBX1); homeodo 99.6 1.1E-16 3.8E-21 124.9 4.4 61 58-118 2-65 (87)
52 2cqx_A LAG1 longevity assuranc 99.6 2.7E-17 9.1E-22 125.5 0.7 59 58-116 9-68 (72)
53 2cuf_A FLJ21616 protein; homeo 99.6 1.4E-16 4.8E-21 126.8 4.6 63 55-117 5-82 (95)
54 2dmp_A Zinc fingers and homeob 99.6 1.6E-16 5.3E-21 125.6 4.8 58 59-116 15-72 (89)
55 1du6_A PBX1, homeobox protein 99.6 5.5E-17 1.9E-21 119.8 1.8 58 57-114 3-63 (64)
56 2dmn_A Homeobox protein TGIF2L 99.6 2E-16 6.8E-21 123.4 4.5 64 55-118 5-71 (83)
57 1le8_B Mating-type protein alp 99.6 1.3E-16 4.5E-21 124.2 2.9 62 58-119 3-67 (83)
58 2l9r_A Homeobox protein NKX-3. 99.6 5.3E-17 1.8E-21 123.4 -0.1 56 63-118 10-65 (69)
59 1mnm_C Protein (MAT alpha-2 tr 99.6 3.1E-16 1.1E-20 122.8 3.9 59 56-114 26-87 (87)
60 3nau_A Zinc fingers and homeob 99.6 5E-16 1.7E-20 117.4 3.4 53 64-116 11-63 (66)
61 1e3o_C Octamer-binding transcr 99.6 3.4E-16 1.1E-20 135.6 2.7 60 56-115 100-159 (160)
62 1au7_A Protein PIT-1, GHF-1; c 99.6 3.8E-16 1.3E-20 133.6 2.7 60 56-115 86-145 (146)
63 2e19_A Transcription factor 8; 99.6 5.9E-16 2E-20 115.6 3.1 53 62-114 8-60 (64)
64 2xsd_C POU domain, class 3, tr 99.6 4E-16 1.4E-20 136.1 2.3 62 56-117 98-159 (164)
65 1x2m_A LAG1 longevity assuranc 99.6 2.9E-16 1E-20 118.0 1.0 50 66-115 9-59 (64)
66 3d1n_I POU domain, class 6, tr 99.6 1.1E-15 3.9E-20 130.9 4.2 59 56-114 92-150 (151)
67 2da6_A Hepatocyte nuclear fact 99.6 2.4E-15 8.1E-20 122.6 5.4 62 55-116 4-86 (102)
68 3l1p_A POU domain, class 5, tr 99.5 2.1E-15 7E-20 130.2 3.2 61 55-115 94-154 (155)
69 1wi3_A DNA-binding protein SAT 99.5 3.5E-15 1.2E-19 113.6 3.5 58 56-113 6-64 (71)
70 3k2a_A Homeobox protein MEIS2; 99.5 2.9E-15 9.8E-20 112.5 2.3 58 63-120 4-64 (67)
71 2d5v_A Hepatocyte nuclear fact 99.5 3.3E-15 1.1E-19 129.3 2.7 61 56-116 96-156 (164)
72 1lfb_A Liver transcription fac 99.5 2.3E-15 7.9E-20 121.7 1.4 61 56-116 8-89 (99)
73 1ic8_A Hepatocyte nuclear fact 99.3 1.8E-13 6.3E-18 122.6 0.3 59 56-114 114-193 (194)
74 2lk2_A Homeobox protein TGIF1; 99.3 1.1E-12 3.8E-17 104.4 3.6 57 63-119 11-70 (89)
75 2da7_A Zinc finger homeobox pr 99.3 1.1E-12 3.6E-17 100.3 2.6 46 66-111 14-59 (71)
76 1mh3_A Maltose binding-A1 home 99.2 3.4E-12 1.2E-16 120.8 1.6 53 61-113 369-421 (421)
77 2h8r_A Hepatocyte nuclear fact 99.1 9E-12 3.1E-16 113.7 2.6 55 58-112 143-218 (221)
78 2nzz_A Penetratin conjugated G 98.7 4.4E-10 1.5E-14 75.9 -1.9 27 99-125 1-27 (37)
79 2ys9_A Homeobox and leucine zi 90.5 0.067 2.3E-06 40.6 0.7 40 67-106 16-55 (70)
80 2jn6_A Protein CGL2762, transp 83.3 0.8 2.7E-05 34.8 3.1 43 61-107 3-46 (97)
81 1gu4_A CAAT/enhancer binding p 68.6 9 0.00031 29.2 5.3 47 108-163 28-74 (78)
82 2glo_A Brinker CG9653-PA; prot 67.4 2 6.8E-05 29.9 1.3 45 61-106 3-47 (59)
83 1hjb_A Ccaat/enhancer binding 65.6 9.4 0.00032 29.7 5.0 47 108-163 28-74 (87)
84 1hlv_A CENP-B, major centromer 62.7 5.4 0.00018 31.3 3.2 48 60-110 4-51 (131)
85 1t2k_D Cyclic-AMP-dependent tr 55.1 21 0.00072 25.4 5.0 28 123-150 26-53 (61)
86 1tc3_C Protein (TC3 transposas 55.0 5.6 0.00019 25.0 1.7 40 63-107 5-44 (51)
87 1jnm_A Proto-oncogene C-JUN; B 54.6 20 0.00067 25.6 4.8 35 122-162 25-59 (62)
88 1jko_C HIN recombinase, DNA-in 53.6 2.5 8.5E-05 27.3 -0.2 41 63-108 5-45 (52)
89 2yy0_A C-MYC-binding protein; 51.8 13 0.00045 26.2 3.4 31 127-163 20-50 (53)
90 2elh_A CG11849-PA, LD40883P; s 51.4 9 0.00031 28.6 2.6 41 60-105 19-59 (87)
91 2wt7_A Proto-oncogene protein 47.7 32 0.0011 24.7 5.0 28 123-150 27-54 (63)
92 3hug_A RNA polymerase sigma fa 47.7 9.9 0.00034 28.3 2.3 45 64-113 38-82 (92)
93 1t2k_D Cyclic-AMP-dependent tr 46.2 40 0.0014 23.9 5.3 41 109-149 19-59 (61)
94 1gd2_E Transcription factor PA 46.0 27 0.00091 26.1 4.4 22 129-150 39-60 (70)
95 1ci6_A Transcription factor AT 45.5 36 0.0012 24.5 5.0 28 123-150 27-54 (63)
96 2wt7_A Proto-oncogene protein 43.6 45 0.0015 23.9 5.2 39 112-150 23-61 (63)
97 1gd2_E Transcription factor PA 38.2 40 0.0014 25.1 4.3 38 113-150 30-67 (70)
98 2yy0_A C-MYC-binding protein; 38.1 38 0.0013 23.8 4.0 32 119-150 19-50 (53)
99 1jnm_A Proto-oncogene C-JUN; B 35.3 29 0.001 24.7 3.1 36 114-149 24-59 (62)
100 2o8x_A Probable RNA polymerase 35.3 13 0.00045 25.5 1.2 44 64-112 16-59 (70)
101 2lv7_A Calcium-binding protein 34.5 64 0.0022 24.3 5.1 45 61-105 27-78 (100)
102 2dgc_A Protein (GCN4); basic d 34.1 54 0.0019 23.6 4.4 29 129-163 33-61 (63)
103 3mzy_A RNA polymerase sigma-H 31.9 22 0.00075 27.8 2.1 45 63-113 109-153 (164)
104 3lph_A Protein REV; helix-loop 31.3 34 0.0012 25.9 2.9 36 69-118 18-53 (72)
105 1p4w_A RCSB; solution structur 30.7 27 0.00093 26.9 2.4 43 62-110 33-75 (99)
106 1ci6_A Transcription factor AT 30.5 97 0.0033 22.2 5.2 36 114-149 25-60 (63)
107 3c57_A Two component transcrip 30.1 19 0.00064 27.2 1.3 45 63-113 27-71 (95)
108 2x7l_M HIV REV; nuclear export 30.1 17 0.00058 29.8 1.1 35 69-117 15-49 (115)
109 2wt7_B Transcription factor MA 29.8 42 0.0015 26.2 3.4 37 120-162 49-85 (90)
110 2rn7_A IS629 ORFA; helix, all 29.0 29 0.001 26.2 2.3 46 61-106 4-52 (108)
111 3i5g_B Myosin regulatory light 28.7 90 0.0031 24.9 5.4 40 60-99 6-50 (153)
112 2jee_A YIIU; FTSZ, septum, coi 27.9 1E+02 0.0035 23.7 5.1 22 129-150 44-65 (81)
113 1fse_A GERE; helix-turn-helix 27.1 29 0.001 24.0 1.9 44 63-112 11-54 (74)
114 1ku3_A Sigma factor SIGA; heli 26.5 26 0.00089 24.8 1.5 49 63-112 10-58 (73)
115 1s7o_A Hypothetical UPF0122 pr 26.3 30 0.001 27.3 2.0 47 63-114 22-68 (113)
116 2p7v_B Sigma-70, RNA polymeras 26.2 21 0.00073 24.8 1.0 47 64-111 6-52 (68)
117 1je8_A Nitrate/nitrite respons 26.1 38 0.0013 24.7 2.4 45 63-113 21-65 (82)
118 1iuf_A Centromere ABP1 protein 26.1 47 0.0016 27.0 3.2 48 58-108 6-60 (144)
119 1tty_A Sigma-A, RNA polymerase 23.9 26 0.00089 25.8 1.1 49 64-113 19-67 (87)
120 1xsv_A Hypothetical UPF0122 pr 23.3 62 0.0021 25.3 3.3 46 64-114 26-71 (113)
121 1hjb_A Ccaat/enhancer binding 23.2 1.4E+02 0.0046 23.1 5.1 40 111-150 35-74 (87)
122 1x3u_A Transcriptional regulat 23.1 15 0.00053 25.9 -0.3 45 64-114 17-61 (79)
123 2kvr_A Ubiquitin carboxyl-term 21.6 43 0.0015 27.4 2.1 23 87-109 72-94 (130)
124 1or7_A Sigma-24, RNA polymeras 21.2 38 0.0013 27.5 1.7 45 64-113 141-185 (194)
125 2dgc_A Protein (GCN4); basic d 20.5 2.1E+02 0.0072 20.4 5.4 39 109-150 23-61 (63)
No 1
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.72 E-value=1.5e-18 Score=133.25 Aligned_cols=62 Identities=26% Similarity=0.439 Sum_probs=56.9
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHH
Q 021367 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (313)
Q Consensus 55 g~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (313)
...+++|++||.+|+.+||..|..++||+..++.+||.+|||+++||+|||||||+|+|+++
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 15 QRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 34555666799999999999999999999999999999999999999999999999999865
No 2
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=3.3e-18 Score=132.09 Aligned_cols=66 Identities=30% Similarity=0.597 Sum_probs=59.8
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHHHHH
Q 021367 54 GGHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLER 119 (313)
Q Consensus 54 ~g~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq~e~ 119 (313)
++..+++|++||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+.+...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (80)
T 2cue_A 4 GSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR 69 (80)
T ss_dssp CCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhh
Confidence 345566777899999999999999999999999999999999999999999999999999976443
No 3
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.72 E-value=1.7e-18 Score=127.99 Aligned_cols=61 Identities=33% Similarity=0.617 Sum_probs=55.3
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHH
Q 021367 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (313)
Q Consensus 56 ~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (313)
..+++|++||..|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+.+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 3566777899999999999999999999999999999999999999999999999999853
No 4
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.72 E-value=1.1e-18 Score=128.40 Aligned_cols=61 Identities=30% Similarity=0.413 Sum_probs=53.2
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHH
Q 021367 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (313)
Q Consensus 56 ~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (313)
..+++|+.||..|+.+||..|..++||+..++.+||..+||+++||+|||||||+|+|+++
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 3456677799999999999999999999999999999999999999999999999999863
No 5
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.6e-18 Score=129.28 Aligned_cols=62 Identities=27% Similarity=0.538 Sum_probs=57.7
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHH
Q 021367 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (313)
Q Consensus 55 g~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (313)
+..+++|++||.+|+.+||..|..++||+..++.+||.+|||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 45566777899999999999999999999999999999999999999999999999999864
No 6
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.5e-18 Score=131.97 Aligned_cols=62 Identities=34% Similarity=0.584 Sum_probs=56.5
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHH
Q 021367 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (313)
Q Consensus 55 g~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (313)
...+++|++||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+..
T Consensus 15 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 15 KKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 34455566699999999999999999999999999999999999999999999999999864
No 7
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=1.6e-18 Score=130.60 Aligned_cols=62 Identities=26% Similarity=0.502 Sum_probs=57.5
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHH
Q 021367 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (313)
Q Consensus 55 g~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (313)
+..+++|++||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 44566677899999999999999999999999999999999999999999999999999864
No 8
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.72 E-value=3.1e-18 Score=131.36 Aligned_cols=65 Identities=29% Similarity=0.462 Sum_probs=58.3
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHHHHHH
Q 021367 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERD 120 (313)
Q Consensus 56 ~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq~e~~ 120 (313)
..+++|++||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+.+.+..
T Consensus 8 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~~ 72 (77)
T 1nk2_P 8 KKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKG 72 (77)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcccc
Confidence 34445666999999999999999999999999999999999999999999999999999775443
No 9
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=3.6e-18 Score=128.64 Aligned_cols=62 Identities=42% Similarity=0.676 Sum_probs=57.4
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHH
Q 021367 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (313)
Q Consensus 55 g~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (313)
+..+++|++||.+|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+..
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 34556677899999999999999999999999999999999999999999999999999864
No 10
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3.1e-18 Score=131.78 Aligned_cols=64 Identities=25% Similarity=0.498 Sum_probs=58.9
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHHHH
Q 021367 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (313)
Q Consensus 55 g~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq~e 118 (313)
+..+++|++||.+|+.+||..|..++||+..++.+||.+|||+++||+|||||||+|+|++...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLR 68 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHH
Confidence 4556677789999999999999999999999999999999999999999999999999997643
No 11
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.71 E-value=7.8e-18 Score=129.13 Aligned_cols=63 Identities=33% Similarity=0.485 Sum_probs=58.1
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHHH
Q 021367 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (313)
Q Consensus 55 g~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq~ 117 (313)
+..+++|++||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+...
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 445566777999999999999999999999999999999999999999999999999998764
No 12
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.71 E-value=2.9e-18 Score=128.89 Aligned_cols=62 Identities=23% Similarity=0.388 Sum_probs=57.5
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHH
Q 021367 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (313)
Q Consensus 55 g~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (313)
+..+++|++||.+|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|++.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 45566677899999999999999999999999999999999999999999999999999864
No 13
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.71 E-value=4.9e-18 Score=131.80 Aligned_cols=62 Identities=27% Similarity=0.381 Sum_probs=57.0
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHH
Q 021367 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (313)
Q Consensus 55 g~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (313)
+..+++|+.||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+.+
T Consensus 20 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 20 VKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp SCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 34555666799999999999999999999999999999999999999999999999999864
No 14
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=5.3e-18 Score=130.82 Aligned_cols=63 Identities=24% Similarity=0.383 Sum_probs=58.1
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHHH
Q 021367 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (313)
Q Consensus 55 g~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq~ 117 (313)
+..+++|++||.+|+.+||..|..++||+..++.+||..|||++++|+|||||||+|+|+++.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 455666777999999999999999999999999999999999999999999999999998753
No 15
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3.1e-18 Score=129.04 Aligned_cols=63 Identities=32% Similarity=0.508 Sum_probs=57.8
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHH
Q 021367 54 GGHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (313)
Q Consensus 54 ~g~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (313)
++..+++|++||.+|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 345566677899999999999999999999999999999999999999999999999999854
No 16
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.70 E-value=7.8e-18 Score=133.98 Aligned_cols=66 Identities=30% Similarity=0.531 Sum_probs=58.7
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHHHHHHH
Q 021367 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDY 121 (313)
Q Consensus 56 ~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq~e~~~ 121 (313)
..+++|++||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|||++..+...
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~ 81 (93)
T 3a01_A 16 KRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEERE 81 (93)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred CCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHH
Confidence 445556679999999999999999999999999999999999999999999999999998765443
No 17
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=6.7e-18 Score=122.36 Aligned_cols=57 Identities=32% Similarity=0.553 Sum_probs=54.1
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhH
Q 021367 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (313)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kk 114 (313)
+++|++||..|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 356778999999999999999999999999999999999999999999999999986
No 18
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.70 E-value=5.2e-18 Score=124.44 Aligned_cols=58 Identities=31% Similarity=0.613 Sum_probs=52.6
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhH
Q 021367 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (313)
Q Consensus 57 ~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kk 114 (313)
.+++|++||..|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 3556777999999999999999999999999999999999999999999999999986
No 19
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.70 E-value=3.9e-18 Score=128.17 Aligned_cols=62 Identities=21% Similarity=0.424 Sum_probs=57.3
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHH
Q 021367 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (313)
Q Consensus 55 g~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (313)
+..+++|++||.+|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 44566677799999999999999999999999999999999999999999999999999864
No 20
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.70 E-value=5.7e-18 Score=131.63 Aligned_cols=60 Identities=17% Similarity=0.302 Sum_probs=55.2
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhh----cCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhH
Q 021367 55 GHVSEKKRRLSVDQVKALEKNFEV----ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (313)
Q Consensus 55 g~~krKRrRfT~~Ql~~LE~~F~~----~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kk 114 (313)
+..+++|+.||.+|+..||..|+. ++||+..+|++||..|||+++||+|||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 345556667999999999999999 999999999999999999999999999999999885
No 21
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=5.8e-18 Score=131.25 Aligned_cols=59 Identities=27% Similarity=0.320 Sum_probs=55.4
Q ss_pred CCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHHH
Q 021367 59 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (313)
Q Consensus 59 rKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq~ 117 (313)
.+|++||.+|+.+||+.|..++||+..+|++||..+||+++||+|||||||+|+|+.++
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 45667999999999999999999999999999999999999999999999999998764
No 22
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.69 E-value=1.1e-17 Score=125.38 Aligned_cols=61 Identities=30% Similarity=0.481 Sum_probs=56.9
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHHH
Q 021367 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (313)
Q Consensus 57 ~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq~ 117 (313)
.+++|++||..|+.+||..|..++||+..++..||..|||++++|+|||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 3556778999999999999999999999999999999999999999999999999998764
No 23
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.69 E-value=3.8e-18 Score=127.85 Aligned_cols=62 Identities=24% Similarity=0.509 Sum_probs=57.6
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHHH
Q 021367 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (313)
Q Consensus 56 ~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq~ 117 (313)
..+++|++||..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+.+.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 45667778999999999999999999999999999999999999999999999999998753
No 24
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.68 E-value=9.5e-18 Score=130.09 Aligned_cols=62 Identities=32% Similarity=0.569 Sum_probs=54.1
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHH
Q 021367 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (313)
Q Consensus 55 g~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (313)
+..+++|++||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+..
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 44566677899999999999999999999999999999999999999999999999999864
No 25
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.68 E-value=6.1e-18 Score=125.89 Aligned_cols=60 Identities=27% Similarity=0.494 Sum_probs=56.1
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHH
Q 021367 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (313)
Q Consensus 57 ~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (313)
.+++|++||.+|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|++.
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 455677799999999999999999999999999999999999999999999999999864
No 26
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.2e-17 Score=127.75 Aligned_cols=59 Identities=24% Similarity=0.410 Sum_probs=55.5
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHH
Q 021367 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (313)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (313)
++||++||.+|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|++.
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 34667799999999999999999999999999999999999999999999999999865
No 27
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.68 E-value=8.6e-18 Score=126.19 Aligned_cols=59 Identities=34% Similarity=0.679 Sum_probs=55.9
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHH
Q 021367 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (313)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (313)
+++|++||..|+..||..|..++||+..++.+||..+||+++||+|||||||+|+|+..
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 3 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp SCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 55677799999999999999999999999999999999999999999999999999865
No 28
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.68 E-value=1.8e-17 Score=126.05 Aligned_cols=61 Identities=26% Similarity=0.479 Sum_probs=56.6
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHH
Q 021367 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (313)
Q Consensus 56 ~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (313)
..+++|++||..|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 6 EGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp CCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 3456677799999999999999999999999999999999999999999999999999864
No 29
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.68 E-value=1.6e-17 Score=125.79 Aligned_cols=58 Identities=33% Similarity=0.587 Sum_probs=55.0
Q ss_pred CCCCcCCHHHHHHHHHhhhh-cCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHH
Q 021367 59 EKKRRLSVDQVKALEKNFEV-ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (313)
Q Consensus 59 rKRrRfT~~Ql~~LE~~F~~-~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (313)
++|++||..|+.+||..|.. ++||+..++.+||..+||+++||+|||||||+|+|++.
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 46778999999999999996 99999999999999999999999999999999999865
No 30
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.68 E-value=1.2e-17 Score=122.13 Aligned_cols=58 Identities=36% Similarity=0.562 Sum_probs=54.5
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHH
Q 021367 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (313)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkk 115 (313)
+++|++||..|+.+||..|..++||+..++.+||..+||++.||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 4567789999999999999999999999999999999999999999999999999974
No 31
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-17 Score=126.27 Aligned_cols=62 Identities=31% Similarity=0.568 Sum_probs=57.2
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHH
Q 021367 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (313)
Q Consensus 55 g~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (313)
+..+++|++||..|+.+||..|..++||+..++.+||..|||++.+|+|||||||+|+|++.
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 44556667799999999999999999999999999999999999999999999999999864
No 32
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.68 E-value=1.2e-17 Score=131.15 Aligned_cols=63 Identities=33% Similarity=0.682 Sum_probs=54.6
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHH
Q 021367 54 GGHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (313)
Q Consensus 54 ~g~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (313)
.+..+++|++||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+.+
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 345666777899999999999999999999999999999999999999999999999999853
No 33
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.68 E-value=2e-17 Score=127.80 Aligned_cols=61 Identities=31% Similarity=0.513 Sum_probs=56.5
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHH
Q 021367 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (313)
Q Consensus 56 ~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (313)
..+++|++||..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|++.
T Consensus 17 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 17 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 3455566799999999999999999999999999999999999999999999999999865
No 34
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=7.8e-18 Score=129.86 Aligned_cols=61 Identities=20% Similarity=0.346 Sum_probs=56.2
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhc----CCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHH
Q 021367 56 HVSEKKRRLSVDQVKALEKNFEVE----NKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (313)
Q Consensus 56 ~~krKRrRfT~~Ql~~LE~~F~~~----~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (313)
..+++|+.||.+|+.+||..|..+ +||+..++++||.+|||+++||+|||||||+|+|+..
T Consensus 7 ~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 7 GALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 445556679999999999999999 9999999999999999999999999999999999854
No 35
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.68 E-value=1.6e-17 Score=119.68 Aligned_cols=57 Identities=35% Similarity=0.494 Sum_probs=53.4
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhh
Q 021367 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (313)
Q Consensus 57 ~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~K 113 (313)
.+++|++||..|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 345677799999999999999999999999999999999999999999999999986
No 36
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=2.3e-17 Score=125.32 Aligned_cols=59 Identities=31% Similarity=0.541 Sum_probs=55.3
Q ss_pred CCCCCcCCHHHHHHHHHhhhh-cCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHH
Q 021367 58 SEKKRRLSVDQVKALEKNFEV-ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (313)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F~~-~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (313)
+++|++||.+|+.+||..|.. ++||+..++.+||..+||+++||++||||||+|+|+.+
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 456778999999999999995 99999999999999999999999999999999999865
No 37
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.67 E-value=8.1e-18 Score=125.55 Aligned_cols=61 Identities=31% Similarity=0.495 Sum_probs=56.9
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHHHH
Q 021367 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (313)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq~e 118 (313)
+++|++||..|+.+||..|..++||+..++..||..+||+++||++||||||+|+|++..+
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 4567789999999999999999999999999999999999999999999999999987643
No 38
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.67 E-value=1.3e-17 Score=121.87 Aligned_cols=57 Identities=32% Similarity=0.602 Sum_probs=50.5
Q ss_pred CCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHH
Q 021367 60 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (313)
Q Consensus 60 KRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (313)
.|++||.+|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+.+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 467899999999999999999999999999999999999999999999999999864
No 39
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.67 E-value=1.9e-17 Score=124.15 Aligned_cols=60 Identities=32% Similarity=0.517 Sum_probs=56.1
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHHH
Q 021367 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (313)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq~ 117 (313)
+++|++||..|+.+||..|..++||+..++.+||..|||++++|+|||||||+|+|+...
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp SSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 456677999999999999999999999999999999999999999999999999998653
No 40
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.67 E-value=2.2e-17 Score=119.45 Aligned_cols=54 Identities=35% Similarity=0.639 Sum_probs=51.0
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHH
Q 021367 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (313)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkk 115 (313)
+.||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 458999999999999999999999999999999999999999999999999985
No 41
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.67 E-value=1.7e-17 Score=129.29 Aligned_cols=59 Identities=14% Similarity=0.321 Sum_probs=53.7
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhH
Q 021367 55 GHVSEKKRRLSVDQVKALEKNFEV-----ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (313)
Q Consensus 55 g~~krKRrRfT~~Ql~~LE~~F~~-----~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kk 114 (313)
+..+++|+.||.+|+..|| .|.. ++||+..+|++||.+|||+++||+|||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 15 GTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 3455556679999999999 7999 999999999999999999999999999999999885
No 42
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.66 E-value=2.8e-17 Score=131.22 Aligned_cols=63 Identities=29% Similarity=0.457 Sum_probs=56.7
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHHHH
Q 021367 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (313)
Q Consensus 56 ~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq~e 118 (313)
..+++|++||..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+.++.
T Consensus 24 ~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk 86 (96)
T 3nar_A 24 GSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLK 86 (96)
T ss_dssp ---CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhccc
Confidence 344567779999999999999999999999999999999999999999999999999997654
No 43
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.66 E-value=2.2e-17 Score=120.77 Aligned_cols=57 Identities=33% Similarity=0.518 Sum_probs=48.6
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhh
Q 021367 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (313)
Q Consensus 57 ~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~K 113 (313)
.+++|++||..|+.+||..|..++||+..++.+||..+||++.||++||||||+++|
T Consensus 5 ~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 5 SPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp -------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 445566799999999999999999999999999999999999999999999999986
No 44
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=3e-17 Score=131.16 Aligned_cols=63 Identities=35% Similarity=0.590 Sum_probs=55.3
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHHH
Q 021367 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (313)
Q Consensus 55 g~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq~ 117 (313)
+..+++|++||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|++..
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 455666777999999999999999999999999999999999999999999999999998753
No 45
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2.5e-17 Score=125.97 Aligned_cols=59 Identities=27% Similarity=0.370 Sum_probs=55.3
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHH
Q 021367 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (313)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (313)
...|++||.+|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+..
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 34477899999999999999999999999999999999999999999999999999865
No 46
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=5.6e-17 Score=122.88 Aligned_cols=63 Identities=19% Similarity=0.185 Sum_probs=57.3
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHHH
Q 021367 55 GHVSEKKRRLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (313)
Q Consensus 55 g~~krKRrRfT~~Ql~~LE~~F~~---~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq~ 117 (313)
+..+++|++|+..|+.+||..|.. ++||+..++++||..+||+++||++||||||+|+|+..+
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 345566777999999999999987 999999999999999999999999999999999998754
No 47
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.65 E-value=4.3e-17 Score=123.64 Aligned_cols=60 Identities=13% Similarity=0.271 Sum_probs=56.2
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHH
Q 021367 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (313)
Q Consensus 57 ~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (313)
.++.|++||.+|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+.+
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 345677899999999999999999999999999999999999999999999999999865
No 48
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=3.8e-17 Score=130.03 Aligned_cols=57 Identities=21% Similarity=0.394 Sum_probs=53.8
Q ss_pred CCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHH
Q 021367 60 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (313)
Q Consensus 60 KRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (313)
+.++||.+|+.+||+.|..++||+..+|.+||..|||+++||+|||||||+|||++.
T Consensus 14 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 14 KFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred hhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 445799999999999999999999999999999999999999999999999999865
No 49
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.64 E-value=5e-17 Score=123.17 Aligned_cols=62 Identities=27% Similarity=0.417 Sum_probs=57.2
Q ss_pred CCCCCcCCHHHHHHHHHhh---hhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHHHHH
Q 021367 58 SEKKRRLSVDQVKALEKNF---EVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLER 119 (313)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F---~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq~e~ 119 (313)
+++|++|+..|+.+||..| ..++||+..++..||..+||++.||++||||||+|+|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 5667789999999999999 8999999999999999999999999999999999999876543
No 50
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.64 E-value=6.9e-17 Score=117.91 Aligned_cols=56 Identities=27% Similarity=0.397 Sum_probs=53.2
Q ss_pred CCCcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHH
Q 021367 60 KKRRLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (313)
Q Consensus 60 KRrRfT~~Ql~~LE~~F~~---~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkk 115 (313)
|+++|+.+|+.+||..|.. ++||+..++.+||.++||+++||++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 4677999999999999999 9999999999999999999999999999999999873
No 51
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.63 E-value=1.1e-16 Score=124.87 Aligned_cols=61 Identities=28% Similarity=0.441 Sum_probs=56.3
Q ss_pred CCCCCcCCHHHHHHHHHhh---hhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHHHH
Q 021367 58 SEKKRRLSVDQVKALEKNF---EVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (313)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F---~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq~e 118 (313)
+++|++|+..|+.+||.+| ..++||+..++.+||..+||+++||++||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 5667789999999999999 899999999999999999999999999999999999987644
No 52
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.63 E-value=2.7e-17 Score=125.49 Aligned_cols=59 Identities=25% Similarity=0.389 Sum_probs=54.4
Q ss_pred CCCCCcCCHHHHHHHHHhh-hhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHH
Q 021367 58 SEKKRRLSVDQVKALEKNF-EVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (313)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F-~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (313)
.+++++++.+|+.+||..| ..++||+..++.+||.+|||+++||+|||||||+|||+..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 3456679999999999999 9999999999999999999999999999999999999753
No 53
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=1.4e-16 Score=126.80 Aligned_cols=63 Identities=16% Similarity=0.266 Sum_probs=57.7
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhC---------------CCCceeeeeccchhhHhhHHHH
Q 021367 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELG---------------LQPRQVAVWFQNRRARWKTKQL 117 (313)
Q Consensus 55 g~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~Lg---------------LserQVqVWFQNRRaK~Kkkq~ 117 (313)
...+++|++|+..|+.+||..|+.++||+..++++||..|| |++.+|++||||||+|+|++..
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 34555666799999999999999999999999999999999 9999999999999999998764
No 54
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.6e-16 Score=125.61 Aligned_cols=58 Identities=26% Similarity=0.349 Sum_probs=54.1
Q ss_pred CCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHH
Q 021367 59 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (313)
Q Consensus 59 rKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (313)
.+++++|.+|+.+||..|..++||+..++++||..+||+++||+|||||||+|+|++.
T Consensus 15 ~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 15 QKFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp SCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 3455699999999999999999999999999999999999999999999999998765
No 55
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.63 E-value=5.5e-17 Score=119.84 Aligned_cols=58 Identities=28% Similarity=0.425 Sum_probs=54.4
Q ss_pred CCCCCCcCCHHHHHHHHHhh---hhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhH
Q 021367 57 VSEKKRRLSVDQVKALEKNF---EVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (313)
Q Consensus 57 ~krKRrRfT~~Ql~~LE~~F---~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kk 114 (313)
.+++|++|+.+|+.+||..| ..++||+..++.+||..+||++.||++||||||+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 35567779999999999999 89999999999999999999999999999999999986
No 56
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.62 E-value=2e-16 Score=123.39 Aligned_cols=64 Identities=25% Similarity=0.313 Sum_probs=57.2
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHHHH
Q 021367 55 GHVSEKKRRLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (313)
Q Consensus 55 g~~krKRrRfT~~Ql~~LE~~F~~---~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq~e 118 (313)
...+++|++|+.+|+.+|+.+|.. ++||+..+|++||..+||+++||++||||||+|+|+..++
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 345556667999999999999987 5999999999999999999999999999999999986543
No 57
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.61 E-value=1.3e-16 Score=124.18 Aligned_cols=62 Identities=24% Similarity=0.349 Sum_probs=55.7
Q ss_pred CCCCCcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHHHHH
Q 021367 58 SEKKRRLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLER 119 (313)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F~~---~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq~e~ 119 (313)
++++++|+.+|+.+||..|.. ++||+..++.+||..+||+++||++||||||+|+|+.....
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~~ 67 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIAP 67 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccCH
Confidence 345666999999999999999 99999999999999999999999999999999999876443
No 58
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.60 E-value=5.3e-17 Score=123.38 Aligned_cols=56 Identities=41% Similarity=0.614 Sum_probs=53.0
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHHHH
Q 021367 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (313)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq~e 118 (313)
.+|..|+..||..|..++||+..+|.+||..+||+++||+|||||||+|+|+++..
T Consensus 10 ~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 38999999999999999999999999999999999999999999999999987643
No 59
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.60 E-value=3.1e-16 Score=122.77 Aligned_cols=59 Identities=25% Similarity=0.365 Sum_probs=54.6
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhH
Q 021367 56 HVSEKKRRLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (313)
Q Consensus 56 ~~krKRrRfT~~Ql~~LE~~F~~---~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kk 114 (313)
..+++|++|+.+|+.+||..|.. ++||+..++.+||..+||+++||++||||||+|+|.
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 34555677999999999999999 999999999999999999999999999999999983
No 60
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.58 E-value=5e-16 Score=117.43 Aligned_cols=53 Identities=19% Similarity=0.337 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHH
Q 021367 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (313)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (313)
-|.+|+.+||..|..++||+..++.+||..+||+++||++||||||+|||+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 57899999999999999999999999999999999999999999999999754
No 61
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.58 E-value=3.4e-16 Score=135.64 Aligned_cols=60 Identities=28% Similarity=0.441 Sum_probs=53.7
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHH
Q 021367 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (313)
Q Consensus 56 ~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkk 115 (313)
..+++|++||..|+.+||..|..++||+..+|.+||..+||+++||+|||||||+|+|++
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 445566679999999999999999999999999999999999999999999999999974
No 62
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.58 E-value=3.8e-16 Score=133.65 Aligned_cols=60 Identities=32% Similarity=0.530 Sum_probs=54.1
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHH
Q 021367 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (313)
Q Consensus 56 ~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkk 115 (313)
..+++|++||..|+.+||..|..++||+..+|.+||..+||+++||+|||||||+|+|++
T Consensus 86 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 86 RKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 344556669999999999999999999999999999999999999999999999999985
No 63
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=5.9e-16 Score=115.62 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=50.1
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhH
Q 021367 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (313)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kk 114 (313)
..++.+|+..||..|..++||+..+|.+||.+|||+++||+|||||||+|.++
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 34679999999999999999999999999999999999999999999998876
No 64
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.57 E-value=4e-16 Score=136.09 Aligned_cols=62 Identities=31% Similarity=0.360 Sum_probs=52.4
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHHH
Q 021367 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (313)
Q Consensus 56 ~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq~ 117 (313)
..+++|++||..|+.+||..|..++||+..+|.+||..+||+++||+|||||||+|||+...
T Consensus 98 ~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 98 RKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp --------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred cCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 44555666999999999999999999999999999999999999999999999999998753
No 65
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.57 E-value=2.9e-16 Score=117.99 Aligned_cols=50 Identities=26% Similarity=0.453 Sum_probs=46.9
Q ss_pred HHHHHHHHHhh-hhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHH
Q 021367 66 VDQVKALEKNF-EVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (313)
Q Consensus 66 ~~Ql~~LE~~F-~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkk 115 (313)
+.|+.+||+.| ..++||+..+|.+||.+|||+++||+|||||||+|+|+.
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 56899999999 568999999999999999999999999999999999864
No 66
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.56 E-value=1.1e-15 Score=130.93 Aligned_cols=59 Identities=25% Similarity=0.442 Sum_probs=54.7
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhH
Q 021367 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (313)
Q Consensus 56 ~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kk 114 (313)
..+++|++||..|+.+||..|..++||+..++.+||..+||+++||+|||||||+|+|+
T Consensus 92 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 92 KKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 34455666999999999999999999999999999999999999999999999999986
No 67
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.4e-15 Score=122.57 Aligned_cols=62 Identities=19% Similarity=0.300 Sum_probs=56.6
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHh---------------------CCCCceeeeeccchhhHhh
Q 021367 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQEL---------------------GLQPRQVAVWFQNRRARWK 113 (313)
Q Consensus 55 g~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~L---------------------gLserQVqVWFQNRRaK~K 113 (313)
+..+++|+.|+..|+.+||+.|+.++||+..+|++||..| +|++.+|++||||||+++|
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~k 83 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 83 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHH
Confidence 3455566679999999999999999999999999999999 7999999999999999999
Q ss_pred HHH
Q 021367 114 TKQ 116 (313)
Q Consensus 114 kkq 116 (313)
+++
T Consensus 84 r~~ 86 (102)
T 2da6_A 84 FRQ 86 (102)
T ss_dssp HHH
T ss_pred Hhh
Confidence 875
No 68
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.53 E-value=2.1e-15 Score=130.18 Aligned_cols=61 Identities=28% Similarity=0.376 Sum_probs=55.9
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHH
Q 021367 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (313)
Q Consensus 55 g~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkk 115 (313)
+..+++|++|+..|+..||..|..++||+..++.+||..+||+++||+|||||||+|+|+.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 3455667779999999999999999999999999999999999999999999999999973
No 69
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=3.5e-15 Score=113.61 Aligned_cols=58 Identities=19% Similarity=0.253 Sum_probs=52.3
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhh-cCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhh
Q 021367 56 HVSEKKRRLSVDQVKALEKNFEV-ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (313)
Q Consensus 56 ~~krKRrRfT~~Ql~~LE~~F~~-~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~K 113 (313)
..++.|+.|+.+|+.+|+..|+. ++||+.+.|.+||.++||++++|+|||||||--.|
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 44555666999999999999999 99999999999999999999999999999996543
No 70
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.51 E-value=2.9e-15 Score=112.52 Aligned_cols=58 Identities=24% Similarity=0.283 Sum_probs=51.0
Q ss_pred cCCHHHHHHHHHhhh---hcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHHHHHH
Q 021367 63 RLSVDQVKALEKNFE---VENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERD 120 (313)
Q Consensus 63 RfT~~Ql~~LE~~F~---~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq~e~~ 120 (313)
+|+.+|+.+|+..|. .++||+..++.+||..+||+++||++||||||+|+|+..+++.
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 64 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQS 64 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC----
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHh
Confidence 699999999999999 9999999999999999999999999999999999999876554
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.51 E-value=3.3e-15 Score=129.25 Aligned_cols=61 Identities=23% Similarity=0.303 Sum_probs=53.9
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHH
Q 021367 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (313)
Q Consensus 56 ~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq 116 (313)
..+++|++||..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+..
T Consensus 96 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 96 TPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 4556666799999999999999999999999999999999999999999999999999865
No 72
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.51 E-value=2.3e-15 Score=121.71 Aligned_cols=61 Identities=21% Similarity=0.340 Sum_probs=53.1
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHH------------------hC---CCCceeeeeccchhhHhhH
Q 021367 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQE------------------LG---LQPRQVAVWFQNRRARWKT 114 (313)
Q Consensus 56 ~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~------------------Lg---LserQVqVWFQNRRaK~Kk 114 (313)
..+++|+.|+..|+.+||..|+.++||+..+|++||.. || |++.+|+|||||||+++|+
T Consensus 8 k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k~ 87 (99)
T 1lfb_A 8 KGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAF 87 (99)
T ss_dssp -----CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHHH
Confidence 34445556999999999999999999999999999999 88 9999999999999999987
Q ss_pred HH
Q 021367 115 KQ 116 (313)
Q Consensus 115 kq 116 (313)
++
T Consensus 88 k~ 89 (99)
T 1lfb_A 88 RH 89 (99)
T ss_dssp CC
T ss_pred hc
Confidence 65
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.31 E-value=1.8e-13 Score=122.61 Aligned_cols=59 Identities=19% Similarity=0.264 Sum_probs=51.9
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhC---------------------CCCceeeeeccchhhHhhH
Q 021367 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELG---------------------LQPRQVAVWFQNRRARWKT 114 (313)
Q Consensus 56 ~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~Lg---------------------LserQVqVWFQNRRaK~Kk 114 (313)
..+++|+.|+..|+.+||+.|..++||+..+|++||..+| |++.+|++||||||+++|.
T Consensus 114 k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k~ 193 (194)
T 1ic8_A 114 KGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAF 193 (194)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC-
T ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhhc
Confidence 3444555699999999999999999999999999999999 9999999999999999875
No 74
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.29 E-value=1.1e-12 Score=104.40 Aligned_cols=57 Identities=26% Similarity=0.320 Sum_probs=52.8
Q ss_pred cCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHHHHH
Q 021367 63 RLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLER 119 (313)
Q Consensus 63 RfT~~Ql~~LE~~F~~---~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq~e~ 119 (313)
-|+.+++.+|+.+|.. ++||+..+|.+||.++||+++||++||||+|.|+++..+++
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 3899999999999987 99999999999999999999999999999999999876544
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=1.1e-12 Score=100.30 Aligned_cols=46 Identities=20% Similarity=0.459 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhH
Q 021367 66 VDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRAR 111 (313)
Q Consensus 66 ~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK 111 (313)
.+|+.+|+.+|..+++|+.+++..||..+||+.++|+|||||||++
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999999974
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.18 E-value=3.4e-12 Score=120.80 Aligned_cols=53 Identities=34% Similarity=0.534 Sum_probs=50.5
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhh
Q 021367 61 KRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (313)
Q Consensus 61 RrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~K 113 (313)
++.++..|+..||+.|+.++||+..+|++||+++||+++||+|||||||+|+|
T Consensus 369 ~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 369 AAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 44599999999999999999999999999999999999999999999999986
No 77
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.15 E-value=9e-12 Score=113.70 Aligned_cols=55 Identities=18% Similarity=0.314 Sum_probs=49.5
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhC---------------------CCCceeeeeccchhhHh
Q 021367 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELG---------------------LQPRQVAVWFQNRRARW 112 (313)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~Lg---------------------LserQVqVWFQNRRaK~ 112 (313)
++.|..|+..|+.+||+.|..++||+..+|++||..+| |++.+|++||||||++.
T Consensus 143 RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 143 RRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 33344599999999999999999999999999999998 89999999999999864
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.74 E-value=4.4e-10 Score=75.89 Aligned_cols=27 Identities=37% Similarity=0.975 Sum_probs=22.6
Q ss_pred ceeeeeccchhhHhhHHHHHHHHHHHH
Q 021367 99 RQVAVWFQNRRARWKTKQLERDYGVLK 125 (313)
Q Consensus 99 rQVqVWFQNRRaK~Kkkq~e~~~~~Lk 125 (313)
+||+|||||||+|||+++.+..+..++
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~~~~~ 27 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDARDIIQ 27 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTTTSSS
T ss_pred CCceeccHHHHHHHHHHhHHHHHHHHH
Confidence 689999999999999998876655443
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.49 E-value=0.067 Score=40.59 Aligned_cols=40 Identities=25% Similarity=0.468 Sum_probs=37.0
Q ss_pred HHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeecc
Q 021367 67 DQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQ 106 (313)
Q Consensus 67 ~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQ 106 (313)
.-.+.|+.+|...+.+.......|+.+.+|+..||+-||-
T Consensus 16 ~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa 55 (70)
T 2ys9_A 16 PDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFD 55 (70)
T ss_dssp CCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHH
T ss_pred CcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHH
Confidence 3457899999999999999999999999999999999994
No 80
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=83.28 E-value=0.8 Score=34.75 Aligned_cols=43 Identities=14% Similarity=0.274 Sum_probs=30.3
Q ss_pred CCcCCHHHHHHHHHhhhhc-CCCCHHHHHHHHHHhCCCCceeeeeccc
Q 021367 61 KRRLSVDQVKALEKNFEVE-NKLEPERKVKLAQELGLQPRQVAVWFQN 107 (313)
Q Consensus 61 RrRfT~~Ql~~LE~~F~~~-~yPs~~~reeLA~~LgLserQVqVWFQN 107 (313)
|++||.++....-..+... . ....++|+.+|++...|..|...
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g----~s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDG----ASLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGG----SCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC----ChHHHHHHHHCcCHHHHHHHHHH
Confidence 3468888776555555322 2 23668999999999999999753
No 81
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=68.58 E-value=9 Score=29.23 Aligned_cols=47 Identities=21% Similarity=0.200 Sum_probs=30.4
Q ss_pred hhhHhhHHHHHHHHHHHHhhhHHHhhhhhchHHHHHHHHHhhhccccchhhhhhcc
Q 021367 108 RRARWKTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKETIVHETDHQNKATLD 163 (313)
Q Consensus 108 RRaK~Kkkq~e~~~~~Lk~~~~~L~~e~dsL~~en~~L~~el~~~~~d~~lk~kL~ 163 (313)
+|.+.|+++.+.+ +......|..+|..|+.+...|..|+. .|+.-|.
T Consensus 28 krSR~krk~r~~e---~~~r~~~L~~eN~~L~~~v~~L~~E~~------~Lr~ll~ 74 (78)
T 1gu4_A 28 RKSRDKAKMRNLE---TQHKVLELTAENERLQKKVEQLSRELS------TLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHTTTC
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 3556666554333 344556777777777777778877777 6766553
No 82
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=67.41 E-value=2 Score=29.90 Aligned_cols=45 Identities=13% Similarity=0.255 Sum_probs=31.2
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeecc
Q 021367 61 KRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQ 106 (313)
Q Consensus 61 RrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQ 106 (313)
+++|+.++.......+... ........++|+++|+++..|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 4569988877665544433 22122256899999999999999964
No 83
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=65.58 E-value=9.4 Score=29.73 Aligned_cols=47 Identities=21% Similarity=0.200 Sum_probs=28.7
Q ss_pred hhhHhhHHHHHHHHHHHHhhhHHHhhhhhchHHHHHHHHHhhhccccchhhhhhcc
Q 021367 108 RRARWKTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKETIVHETDHQNKATLD 163 (313)
Q Consensus 108 RRaK~Kkkq~e~~~~~Lk~~~~~L~~e~dsL~~en~~L~~el~~~~~d~~lk~kL~ 163 (313)
||.+.|+++.+.+ +......|..+|..|+.+...|..|+. .|+.-|.
T Consensus 28 rrSR~krk~r~~e---~~~r~~~Le~EN~~Lr~~v~~L~~E~~------~Lr~ll~ 74 (87)
T 1hjb_A 28 RKSRDKAKMRNLE---TQHKVLELTAENERLQKKVEQLSRELS------TLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 3555555544333 334456677777777777777777776 6666554
No 84
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=62.71 E-value=5.4 Score=31.34 Aligned_cols=48 Identities=21% Similarity=0.425 Sum_probs=36.6
Q ss_pred CCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhh
Q 021367 60 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRA 110 (313)
Q Consensus 60 KRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRa 110 (313)
+|+++|.++...+-..+..+..... .++|+.+|++...|..|..+++.
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHhchhh
Confidence 5667999998877777755544432 36899999999999999876654
No 85
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=55.09 E-value=21 Score=25.35 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=16.5
Q ss_pred HHHhhhHHHhhhhhchHHHHHHHHHhhh
Q 021367 123 VLKANYDALKLNYDSLQHDNEALLKETI 150 (313)
Q Consensus 123 ~Lk~~~~~L~~e~dsL~~en~~L~~el~ 150 (313)
.|....+.|..++..|..+...|..++.
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~ 53 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666666666666666665
No 86
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=55.04 E-value=5.6 Score=24.98 Aligned_cols=40 Identities=10% Similarity=0.145 Sum_probs=28.7
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccc
Q 021367 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQN 107 (313)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQN 107 (313)
.++.++...+...+... + ...++|+.+|++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 47787776555555433 2 3568999999999999988753
No 87
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=54.58 E-value=20 Score=25.65 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=20.9
Q ss_pred HHHHhhhHHHhhhhhchHHHHHHHHHhhhccccchhhhhhc
Q 021367 122 GVLKANYDALKLNYDSLQHDNEALLKETIVHETDHQNKATL 162 (313)
Q Consensus 122 ~~Lk~~~~~L~~e~dsL~~en~~L~~el~~~~~d~~lk~kL 162 (313)
..|....+.|..++..|..+...|..++. .|+..|
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~L~~e~~------~Lk~~l 59 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANMLREQVA------QLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------TTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
Confidence 34455556666777777777777777776 566554
No 88
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=53.57 E-value=2.5 Score=27.30 Aligned_cols=41 Identities=12% Similarity=0.239 Sum_probs=29.2
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccch
Q 021367 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNR 108 (313)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNR 108 (313)
.++.++...+...+... ....+||+.+|++...|..|+...
T Consensus 5 ~~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHc
Confidence 36666666665555533 235689999999999999998643
No 89
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=51.82 E-value=13 Score=26.22 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=18.2
Q ss_pred hhHHHhhhhhchHHHHHHHHHhhhccccchhhhhhcc
Q 021367 127 NYDALKLNYDSLQHDNEALLKETIVHETDHQNKATLD 163 (313)
Q Consensus 127 ~~~~L~~e~dsL~~en~~L~~el~~~~~d~~lk~kL~ 163 (313)
.+++|+.+++.|+.....|.+++. +++.+|.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~------el~~~l~ 50 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENK------KLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHh
Confidence 345555556666666666666666 5665554
No 90
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=51.37 E-value=9 Score=28.56 Aligned_cols=41 Identities=15% Similarity=0.258 Sum_probs=29.5
Q ss_pred CCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeec
Q 021367 60 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWF 105 (313)
Q Consensus 60 KRrRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWF 105 (313)
++++++.++....-..+... . ...++|+++|++...|..|.
T Consensus 19 ~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~ 59 (87)
T 2elh_A 19 PLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWC 59 (87)
T ss_dssp CCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHH
Confidence 45569998865555555432 2 35688999999999998886
No 91
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=47.67 E-value=32 Score=24.66 Aligned_cols=28 Identities=36% Similarity=0.373 Sum_probs=14.8
Q ss_pred HHHhhhHHHhhhhhchHHHHHHHHHhhh
Q 021367 123 VLKANYDALKLNYDSLQHDNEALLKETI 150 (313)
Q Consensus 123 ~Lk~~~~~L~~e~dsL~~en~~L~~el~ 150 (313)
.|....+.|..++..|..+...|..++.
T Consensus 27 ~Le~~v~~L~~~n~~L~~ei~~L~~e~~ 54 (63)
T 2wt7_A 27 TLQAETDQLEDEKSALQTEIANLLKEKE 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555554
No 92
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=47.66 E-value=9.9 Score=28.31 Aligned_cols=45 Identities=13% Similarity=0.250 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhh
Q 021367 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (313)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~K 113 (313)
++..|..+|.-.|.... .-.+||..+|++...|+.+...-|.+.|
T Consensus 38 L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr 82 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALR 82 (92)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 78888888877654332 4568999999999999987754444443
No 93
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=46.17 E-value=40 Score=23.85 Aligned_cols=41 Identities=15% Similarity=0.111 Sum_probs=27.9
Q ss_pred hhHhhHHHHHHHHHHHHhhhHHHhhhhhchHHHHHHHHHhh
Q 021367 109 RARWKTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKET 149 (313)
Q Consensus 109 RaK~Kkkq~e~~~~~Lk~~~~~L~~e~dsL~~en~~L~~el 149 (313)
|.+.+...++.....|...+..|..+...|+.++..|+..+
T Consensus 19 rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 19 KRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555566677777777777777777777777776654
No 94
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=45.98 E-value=27 Score=26.06 Aligned_cols=22 Identities=23% Similarity=0.116 Sum_probs=10.6
Q ss_pred HHHhhhhhchHHHHHHHHHhhh
Q 021367 129 DALKLNYDSLQHDNEALLKETI 150 (313)
Q Consensus 129 ~~L~~e~dsL~~en~~L~~el~ 150 (313)
..|...+..+..+|..|+.++.
T Consensus 39 ~~le~~~~~l~~en~~Lr~~i~ 60 (70)
T 1gd2_E 39 VTLKELHSSTTLENDQLRQKVR 60 (70)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555554
No 95
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=45.47 E-value=36 Score=24.48 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=16.1
Q ss_pred HHHhhhHHHhhhhhchHHHHHHHHHhhh
Q 021367 123 VLKANYDALKLNYDSLQHDNEALLKETI 150 (313)
Q Consensus 123 ~Lk~~~~~L~~e~dsL~~en~~L~~el~ 150 (313)
.+......|..+++.|..+...|..|+.
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666666666666666655
No 96
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=43.61 E-value=45 Score=23.87 Aligned_cols=39 Identities=21% Similarity=0.135 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHhhhHHHhhhhhchHHHHHHHHHhhh
Q 021367 112 WKTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKETI 150 (313)
Q Consensus 112 ~Kkkq~e~~~~~Lk~~~~~L~~e~dsL~~en~~L~~el~ 150 (313)
.....++.+...|...+..|..+...|..+...|...+.
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444556666666666666666666666666655443
No 97
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=38.24 E-value=40 Score=25.07 Aligned_cols=38 Identities=26% Similarity=0.217 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHhhhHHHhhhhhchHHHHHHHHHhhh
Q 021367 113 KTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKETI 150 (313)
Q Consensus 113 Kkkq~e~~~~~Lk~~~~~L~~e~dsL~~en~~L~~el~ 150 (313)
.-+.++.....|...+..+..++..|+.+...|..++.
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666677777788888999999999999998886
No 98
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=38.12 E-value=38 Score=23.82 Aligned_cols=32 Identities=16% Similarity=0.349 Sum_probs=26.8
Q ss_pred HHHHHHHhhhHHHhhhhhchHHHHHHHHHhhh
Q 021367 119 RDYGVLKANYDALKLNYDSLQHDNEALLKETI 150 (313)
Q Consensus 119 ~~~~~Lk~~~~~L~~e~dsL~~en~~L~~el~ 150 (313)
.+++.|+..++.|+..++.|..+++.|.+++.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57788888888888888888888888888775
No 99
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=35.33 E-value=29 Score=24.70 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhhhHHHhhhhhchHHHHHHHHHhh
Q 021367 114 TKQLERDYGVLKANYDALKLNYDSLQHDNEALLKET 149 (313)
Q Consensus 114 kkq~e~~~~~Lk~~~~~L~~e~dsL~~en~~L~~el 149 (313)
...++.....|...+..|..+...|+.++..|+..+
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555566666555555555554443
No 100
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=35.32 E-value=13 Score=25.52 Aligned_cols=44 Identities=18% Similarity=0.059 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHh
Q 021367 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARW 112 (313)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~ 112 (313)
+++.+..+|.-.|... ..-.++|..+|+++..|+.|...-+.+.
T Consensus 16 L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l 59 (70)
T 2o8x_A 16 LTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDAL 59 (70)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 7888888888776433 2356899999999999888775444333
No 101
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=34.46 E-value=64 Score=24.33 Aligned_cols=45 Identities=13% Similarity=0.251 Sum_probs=33.8
Q ss_pred CCcCCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHhCCC--Cceeeeec
Q 021367 61 KRRLSVDQVKALEKNFEV-----ENKLEPERKVKLAQELGLQ--PRQVAVWF 105 (313)
Q Consensus 61 RrRfT~~Ql~~LE~~F~~-----~~yPs~~~reeLA~~LgLs--erQVqVWF 105 (313)
...++.+|+..|...|.. +-+.+..+...+.+.+|.. ..+|+.+|
T Consensus 27 ~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~ 78 (100)
T 2lv7_A 27 PVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVII 78 (100)
T ss_dssp CCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 345999999999999863 4589999988888888854 44444444
No 102
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=34.11 E-value=54 Score=23.64 Aligned_cols=29 Identities=21% Similarity=0.161 Sum_probs=15.5
Q ss_pred HHHhhhhhchHHHHHHHHHhhhccccchhhhhhcc
Q 021367 129 DALKLNYDSLQHDNEALLKETIVHETDHQNKATLD 163 (313)
Q Consensus 129 ~~L~~e~dsL~~en~~L~~el~~~~~d~~lk~kL~ 163 (313)
+.|....+.|..+|..|..++. .|++.+.
T Consensus 33 ~~Le~~v~~L~~eN~~L~~ev~------~Lr~~l~ 61 (63)
T 2dgc_A 33 KQLEDKVEELLSKNYHLENEVA------RLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------HHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHh
Confidence 3344444555666666666666 5665553
No 103
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=31.92 E-value=22 Score=27.79 Aligned_cols=45 Identities=13% Similarity=0.015 Sum_probs=30.2
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhh
Q 021367 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (313)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~K 113 (313)
.+++.|..++. .|-. ...-.++|..+|++...|+.+...-|.+.|
T Consensus 109 ~L~~~~r~v~~-~~~~-----g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 153 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR-----GYSYREIATILSKNLKSIDNTIQRIRKKSE 153 (164)
T ss_dssp HSCHHHHHHHH-HHTT-----TCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc-----CCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 36777777777 3332 225678999999999999887754443333
No 104
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=31.27 E-value=34 Score=25.85 Aligned_cols=36 Identities=28% Similarity=0.562 Sum_probs=23.4
Q ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHHHH
Q 021367 69 VKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (313)
Q Consensus 69 l~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq~e 118 (313)
+.+.+-.|+.|+||+++--.+ |. .|||.+|+..+.+
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-aR-------------RNRRRRWR~RQrQ 53 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-AR-------------RNRRRRWRERQRQ 53 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-HH-------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-HH-------------HHHHHHHHHHHHH
Confidence 445566689999998542111 11 5899999987643
No 105
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=30.71 E-value=27 Score=26.95 Aligned_cols=43 Identities=16% Similarity=0.094 Sum_probs=32.2
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhh
Q 021367 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRA 110 (313)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRa 110 (313)
..+|+.+..+|.-.++-- .-.++|..||+++..|+.+..+-+.
T Consensus 33 ~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~ 75 (99)
T 1p4w_A 33 KRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMM 75 (99)
T ss_dssp SSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 459999999998765322 2378999999999999887654333
No 106
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=30.48 E-value=97 Score=22.16 Aligned_cols=36 Identities=25% Similarity=0.230 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhhhHHHhhhhhchHHHHHHHHHhh
Q 021367 114 TKQLERDYGVLKANYDALKLNYDSLQHDNEALLKET 149 (313)
Q Consensus 114 kkq~e~~~~~Lk~~~~~L~~e~dsL~~en~~L~~el 149 (313)
...++.+...|+..+..|......|..|+..|+.-+
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667777777777777777777777776544
No 107
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=30.09 E-value=19 Score=27.22 Aligned_cols=45 Identities=16% Similarity=0.068 Sum_probs=32.7
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhh
Q 021367 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (313)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~K 113 (313)
.++..|..+|.-.++-- ...++|..+|+++..|+.+..+-+.|.+
T Consensus 27 ~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 27 GLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 48999999998864322 2468999999999998877654444433
No 108
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=30.07 E-value=17 Score=29.77 Aligned_cols=35 Identities=29% Similarity=0.517 Sum_probs=22.8
Q ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhHHHH
Q 021367 69 VKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (313)
Q Consensus 69 l~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kkkq~ 117 (313)
+.+++-.|+.|+||.++--.+ | =.|||.+||.++.
T Consensus 15 vRiIkiLyQSNPyP~peGTRq-a-------------RRNRRRRWR~RQr 49 (115)
T 2x7l_M 15 VRLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQR 49 (115)
T ss_dssp HHHHHHHHHSSCCCCCCCCTT-T-------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchh-h-------------hHhHHHHHHHHHH
Confidence 345556688999998641110 0 1589999998764
No 109
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=29.80 E-value=42 Score=26.24 Aligned_cols=37 Identities=16% Similarity=0.122 Sum_probs=23.8
Q ss_pred HHHHHHhhhHHHhhhhhchHHHHHHHHHhhhccccchhhhhhc
Q 021367 120 DYGVLKANYDALKLNYDSLQHDNEALLKETIVHETDHQNKATL 162 (313)
Q Consensus 120 ~~~~Lk~~~~~L~~e~dsL~~en~~L~~el~~~~~d~~lk~kL 162 (313)
+...|......|..+.+.|..|+..+..+.. .++.++
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d------~~k~k~ 85 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRLARERD------AYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
Confidence 3345555666677777777777777777776 555544
No 110
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=28.95 E-value=29 Score=26.23 Aligned_cols=46 Identities=17% Similarity=0.291 Sum_probs=31.1
Q ss_pred CCcCCHHHHHHHHHhh-hhc-CCCC-HHHHHHHHHHhCCCCceeeeecc
Q 021367 61 KRRLSVDQVKALEKNF-EVE-NKLE-PERKVKLAQELGLQPRQVAVWFQ 106 (313)
Q Consensus 61 RrRfT~~Ql~~LE~~F-~~~-~yPs-~~~reeLA~~LgLserQVqVWFQ 106 (313)
+++||.++....-..+ ... .+.+ .....++|..+|+++..|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 4568988876554444 322 1333 24677899999999999988864
No 111
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=28.70 E-value=90 Score=24.86 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=32.4
Q ss_pred CCCcCCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHhCCCCc
Q 021367 60 KKRRLSVDQVKALEKNFEV-----ENKLEPERKVKLAQELGLQPR 99 (313)
Q Consensus 60 KRrRfT~~Ql~~LE~~F~~-----~~yPs~~~reeLA~~LgLser 99 (313)
++..+|.+|+..|...|.. +-+.+..+...+.+.||..+.
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 4556999999999999964 457899988888888987664
No 112
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=27.88 E-value=1e+02 Score=23.67 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=12.5
Q ss_pred HHHhhhhhchHHHHHHHHHhhh
Q 021367 129 DALKLNYDSLQHDNEALLKETI 150 (313)
Q Consensus 129 ~~L~~e~dsL~~en~~L~~el~ 150 (313)
+.++...+.+.++|..|+.+..
T Consensus 44 ~e~~~~~~~L~~en~qLk~E~~ 65 (81)
T 2jee_A 44 QNAQHQREELERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHH
Confidence 3333333446667777777665
No 113
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=27.09 E-value=29 Score=23.95 Aligned_cols=44 Identities=18% Similarity=0.204 Sum_probs=31.8
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHh
Q 021367 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARW 112 (313)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~ 112 (313)
.+++.|..+|...++ .+ .-.++|..+|+++..|..+..+-+.+.
T Consensus 11 ~L~~~e~~il~~~~~--g~----s~~eIA~~l~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 11 LLTKREREVFELLVQ--DK----TTKEIASELFISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCHHHHHHHHHHTT--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc--CC----CHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 489999999988432 22 446799999999998887775444333
No 114
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=26.53 E-value=26 Score=24.76 Aligned_cols=49 Identities=8% Similarity=0.076 Sum_probs=33.1
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHh
Q 021367 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARW 112 (313)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~ 112 (313)
.+++.+..+|...|..... ....-.++|..+|+++..|+.|...-+.+.
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKL 58 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3788999999888852100 012345899999999999988765434333
No 115
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=26.32 E-value=30 Score=27.29 Aligned_cols=47 Identities=17% Similarity=0.199 Sum_probs=35.2
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhH
Q 021367 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (313)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kk 114 (313)
.+++.|..++.-.|.... .-.++|..+|+++..|+.|...-|.+.++
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 378888888887765442 35689999999999999988755555443
No 116
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=26.21 E-value=21 Score=24.85 Aligned_cols=47 Identities=9% Similarity=0.168 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhH
Q 021367 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRAR 111 (313)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK 111 (313)
+++.+..+|.-.|....+ ....-.++|..+|+++..|+.+...-+.+
T Consensus 6 L~~~er~il~l~~~l~~~-~g~s~~eIA~~lgis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 6 LTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRK 52 (68)
T ss_dssp CCHHHHHHHHHHTTTTSS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 788899999888832111 11234679999999999988876543333
No 117
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=26.14 E-value=38 Score=24.74 Aligned_cols=45 Identities=16% Similarity=0.128 Sum_probs=33.1
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhh
Q 021367 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (313)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~K 113 (313)
.++..|.++|.-.++- ..-.++|..+|++...|+.+..+-+.|.+
T Consensus 21 ~Lt~~e~~vl~l~~~g------~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 21 QLTPRERDILKLIAQG------LPNKMIARRLDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GSCHHHHHHHHHHTTT------CCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 4999999999885321 24568999999999999887754444443
No 118
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=26.10 E-value=47 Score=26.96 Aligned_cols=48 Identities=17% Similarity=0.376 Sum_probs=35.6
Q ss_pred CCCCCcCCHHHHHHHHHhh-hhcCCCCHHHHHHHHH----Hh--CCCCceeeeeccch
Q 021367 58 SEKKRRLSVDQVKALEKNF-EVENKLEPERKVKLAQ----EL--GLQPRQVAVWFQNR 108 (313)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F-~~~~yPs~~~reeLA~----~L--gLserQVqVWFQNR 108 (313)
+++|+++|.+|...+-..+ +.++..... +||. +. +++...|.-|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~---~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQ---DLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHH---HHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 5567789999999999999 666666554 4455 77 77778888887553
No 119
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=23.89 E-value=26 Score=25.82 Aligned_cols=49 Identities=10% Similarity=0.156 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhh
Q 021367 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (313)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~K 113 (313)
+++.+..+|...|..... ....-.++|..+|++...|+.|...-+.+.|
T Consensus 19 L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 19 LSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp SCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHB
T ss_pred CCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 788899999888752100 1123567899999999999987754444433
No 120
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=23.28 E-value=62 Score=25.26 Aligned_cols=46 Identities=13% Similarity=0.063 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhH
Q 021367 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (313)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kk 114 (313)
+++.+..++.-.|.... .-.++|..+|+++..|+.+...-|.+.|.
T Consensus 26 L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 26 LTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 77888888877654332 45689999999999999888655554443
No 121
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=23.16 E-value=1.4e+02 Score=23.07 Aligned_cols=40 Identities=13% Similarity=0.115 Sum_probs=24.6
Q ss_pred HhhHHHHHHHHHHHHhhhHHHhhhhhchHHHHHHHHHhhh
Q 021367 111 RWKTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKETI 150 (313)
Q Consensus 111 K~Kkkq~e~~~~~Lk~~~~~L~~e~dsL~~en~~L~~el~ 150 (313)
|.|-..++.....|...+..|+...+.|..+...|+.-+.
T Consensus 35 k~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666666666666666666666666665554
No 122
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=23.09 E-value=15 Score=25.95 Aligned_cols=45 Identities=27% Similarity=0.291 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhhH
Q 021367 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (313)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~Kk 114 (313)
+++.+..+|.-.+. . ....++|..+|+++..|+.+..+-+.|.+.
T Consensus 17 L~~~e~~vl~l~~~--g----~s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 17 LSERERQVLSAVVA--G----LPNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HCHHHHHHHHHHTT--T----CCHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 78888888877432 1 134589999999999998877654444443
No 123
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=21.62 E-value=43 Score=27.39 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCCceeeeeccchh
Q 021367 87 KVKLAQELGLQPRQVAVWFQNRR 109 (313)
Q Consensus 87 reeLA~~LgLserQVqVWFQNRR 109 (313)
...+|+.+|+++.+++.|.-..|
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHhCCCcccEEEEEeecC
Confidence 57789999999999999985444
No 124
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=21.19 E-value=38 Score=27.50 Aligned_cols=45 Identities=13% Similarity=-0.063 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceeeeeccchhhHhh
Q 021367 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (313)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~reeLA~~LgLserQVqVWFQNRRaK~K 113 (313)
+++.+..++.-.|-.. -.-.++|..+|+++..|+.+...-|.+.|
T Consensus 141 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~tV~~~l~ra~~~Lr 185 (194)
T 1or7_A 141 LPEDLRMAITLRELDG-----LSYEEIAAIMDCPVGTVRSRIFRAREAID 185 (194)
T ss_dssp SCHHHHHHHHHHHTTC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 6777777776655433 23468999999999999887754444433
No 125
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=20.45 E-value=2.1e+02 Score=20.45 Aligned_cols=39 Identities=21% Similarity=0.133 Sum_probs=26.3
Q ss_pred hhHhhHHHHHHHHHHHHhhhHHHhhhhhchHHHHHHHHHhhh
Q 021367 109 RARWKTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKETI 150 (313)
Q Consensus 109 RaK~Kkkq~e~~~~~Lk~~~~~L~~e~dsL~~en~~L~~el~ 150 (313)
|.+.|++. ....|......|..++..|..+...|+.++.
T Consensus 23 rsR~RK~~---~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 23 RSRARKLQ---RMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444433 3445666778888899999999988888764
Done!