Query 021368
Match_columns 313
No_of_seqs 174 out of 2190
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 02:25:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021368.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021368hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 100.0 8.5E-40 1.8E-44 294.4 24.5 264 1-269 207-474 (493)
2 TIGR01130 ER_PDI_fam protein d 100.0 3.1E-33 6.7E-38 261.6 28.2 267 2-274 184-460 (462)
3 PTZ00102 disulphide isomerase; 100.0 5.5E-33 1.2E-37 261.0 27.7 257 2-270 204-467 (477)
4 KOG0191 Thioredoxin/protein di 99.9 1.5E-26 3.2E-31 210.6 19.2 215 39-271 37-255 (383)
5 TIGR02187 GlrX_arch Glutaredox 99.9 9.7E-22 2.1E-26 165.0 18.0 186 51-266 21-214 (215)
6 cd03006 PDI_a_EFP1_N PDIa fami 99.8 1.8E-19 3.9E-24 134.6 10.6 101 159-264 8-113 (113)
7 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 5.6E-19 1.2E-23 130.4 10.5 97 161-263 2-100 (101)
8 PF00085 Thioredoxin: Thioredo 99.8 5.8E-19 1.3E-23 130.6 10.5 101 162-267 1-103 (103)
9 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 4.6E-19 1E-23 131.6 9.6 100 161-264 2-104 (104)
10 KOG0910 Thioredoxin-like prote 99.8 4E-19 8.8E-24 135.2 8.9 104 161-269 44-149 (150)
11 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 1E-18 2.2E-23 129.7 11.0 103 161-264 1-104 (104)
12 cd02996 PDI_a_ERp44 PDIa famil 99.8 1.9E-18 4.1E-23 129.2 10.0 101 161-264 2-108 (108)
13 KOG0190 Protein disulfide isom 99.8 1.8E-17 3.9E-22 150.4 16.7 214 30-276 23-243 (493)
14 cd03065 PDI_b_Calsequestrin_N 99.8 5.2E-18 1.1E-22 127.5 10.5 106 159-268 8-119 (120)
15 cd03002 PDI_a_MPD1_like PDI fa 99.8 7.9E-18 1.7E-22 126.1 10.4 101 162-264 2-108 (109)
16 PTZ00102 disulphide isomerase; 99.7 1.3E-16 2.8E-21 150.1 19.1 227 32-274 32-344 (477)
17 PRK09381 trxA thioredoxin; Pro 99.7 2.4E-17 5.2E-22 123.5 11.1 104 160-268 3-108 (109)
18 cd03001 PDI_a_P5 PDIa family, 99.7 1.9E-17 4E-22 122.7 10.3 99 162-264 2-102 (103)
19 cd02994 PDI_a_TMX PDIa family, 99.7 1.8E-17 4E-22 122.3 10.1 98 161-266 2-101 (101)
20 KOG4277 Uncharacterized conser 99.7 5.6E-17 1.2E-21 135.5 13.2 184 47-268 41-231 (468)
21 cd02993 PDI_a_APS_reductase PD 99.7 3.3E-17 7.2E-22 122.6 10.2 101 161-264 2-109 (109)
22 cd03005 PDI_a_ERp46 PDIa famil 99.7 4.1E-17 8.9E-22 120.6 9.6 98 162-264 2-102 (102)
23 cd02998 PDI_a_ERp38 PDIa famil 99.7 7.1E-17 1.5E-21 119.9 10.8 101 162-264 2-105 (105)
24 COG3118 Thioredoxin domain-con 99.7 4.1E-17 8.8E-22 137.4 9.8 106 160-270 23-132 (304)
25 cd02963 TRX_DnaJ TRX domain, D 99.7 3.1E-17 6.8E-22 123.0 8.2 99 164-266 8-110 (111)
26 TIGR01130 ER_PDI_fam protein d 99.7 4.6E-16 1E-20 145.7 18.0 217 33-278 2-225 (462)
27 cd03003 PDI_a_ERdj5_N PDIa fam 99.7 4.8E-17 1E-21 120.1 9.0 100 32-137 1-101 (101)
28 cd02956 ybbN ybbN protein fami 99.7 9.2E-17 2E-21 117.4 10.1 92 168-264 1-95 (96)
29 PTZ00443 Thioredoxin domain-co 99.7 7.3E-17 1.6E-21 134.5 9.8 106 159-269 29-140 (224)
30 TIGR01126 pdi_dom protein disu 99.7 1.2E-16 2.6E-21 118.0 10.0 100 165-268 1-102 (102)
31 cd03006 PDI_a_EFP1_N PDIa fami 99.7 1.3E-16 2.9E-21 119.1 9.1 101 31-137 8-113 (113)
32 PHA02278 thioredoxin-like prot 99.7 1E-16 2.3E-21 117.8 8.1 90 168-263 5-100 (103)
33 KOG0191 Thioredoxin/protein di 99.7 3.6E-16 7.8E-21 142.6 13.2 228 7-245 112-357 (383)
34 cd02997 PDI_a_PDIR PDIa family 99.7 3.4E-16 7.3E-21 116.1 10.1 99 162-264 2-104 (104)
35 cd02954 DIM1 Dim1 family; Dim1 99.7 8.8E-17 1.9E-21 119.0 6.4 82 167-253 2-86 (114)
36 cd02999 PDI_a_ERp44_like PDIa 99.7 2.7E-16 5.9E-21 115.5 8.5 89 169-264 8-100 (100)
37 PRK10996 thioredoxin 2; Provis 99.7 4.7E-16 1E-20 121.3 10.2 104 159-268 34-139 (139)
38 cd03007 PDI_a_ERp29_N PDIa fam 99.7 4.4E-16 9.6E-21 115.7 9.2 98 162-267 3-115 (116)
39 cd03004 PDI_a_ERdj5_C PDIa fam 99.7 3.5E-16 7.5E-21 116.1 8.1 101 32-137 1-104 (104)
40 TIGR01068 thioredoxin thioredo 99.6 1E-15 2.2E-20 112.7 9.8 98 166-268 2-101 (101)
41 cd02996 PDI_a_ERp44 PDIa famil 99.6 5.7E-16 1.2E-20 115.7 8.5 100 33-137 2-108 (108)
42 PF00085 Thioredoxin: Thioredo 99.6 6.3E-16 1.4E-20 114.3 7.9 101 34-140 1-103 (103)
43 cd02948 TRX_NDPK TRX domain, T 99.6 1.1E-15 2.5E-20 112.8 9.0 96 165-266 5-101 (102)
44 TIGR00424 APS_reduc 5'-adenyly 99.6 1.6E-15 3.4E-20 138.7 11.7 106 159-267 350-462 (463)
45 cd02992 PDI_a_QSOX PDIa family 99.6 2.1E-15 4.7E-20 113.5 10.5 100 161-260 2-108 (114)
46 cd02985 TRX_CDSP32 TRX family, 99.6 1.2E-15 2.7E-20 112.8 9.0 94 167-267 3-102 (103)
47 PLN02309 5'-adenylylsulfate re 99.6 1.7E-15 3.7E-20 138.4 11.2 106 159-267 344-456 (457)
48 cd03007 PDI_a_ERp29_N PDIa fam 99.6 1.6E-15 3.4E-20 112.7 8.3 104 34-140 3-115 (116)
49 cd03065 PDI_b_Calsequestrin_N 99.6 2.6E-15 5.6E-20 112.9 8.8 104 31-141 8-119 (120)
50 cd02950 TxlA TRX-like protein 99.6 1E-14 2.2E-19 114.1 12.5 98 168-271 11-113 (142)
51 cd02957 Phd_like Phosducin (Ph 99.6 3.2E-15 6.9E-20 112.5 9.3 99 160-264 4-112 (113)
52 cd02962 TMX2 TMX2 family; comp 99.6 3.5E-15 7.6E-20 117.1 9.4 91 159-253 27-126 (152)
53 cd03000 PDI_a_TMX3 PDIa family 99.6 5.8E-15 1.3E-19 109.5 10.0 94 168-267 7-103 (104)
54 cd02965 HyaE HyaE family; HyaE 99.6 9.7E-15 2.1E-19 107.4 10.2 94 162-261 12-109 (111)
55 cd03002 PDI_a_MPD1_like PDI fa 99.6 5.2E-15 1.1E-19 110.7 8.9 102 34-138 2-109 (109)
56 KOG0912 Thiol-disulfide isomer 99.6 2.6E-14 5.6E-19 119.8 13.7 212 37-280 1-220 (375)
57 PF13848 Thioredoxin_6: Thiore 99.6 9.4E-15 2E-19 119.8 11.0 135 1-139 46-184 (184)
58 cd02961 PDI_a_family Protein D 99.6 5.1E-15 1.1E-19 108.6 8.5 98 164-264 2-101 (101)
59 cd03001 PDI_a_P5 PDIa family, 99.6 6.8E-15 1.5E-19 108.8 8.7 99 34-137 2-102 (103)
60 KOG0907 Thioredoxin [Posttrans 99.6 1.3E-14 2.8E-19 106.7 9.3 85 176-267 19-105 (106)
61 cd02989 Phd_like_TxnDC9 Phosdu 99.6 2.6E-14 5.6E-19 107.3 9.9 98 160-264 4-112 (113)
62 cd02994 PDI_a_TMX PDIa family, 99.6 2.2E-14 4.8E-19 105.8 9.3 98 33-139 2-101 (101)
63 KOG0910 Thioredoxin-like prote 99.6 1.4E-14 3.1E-19 110.5 8.3 105 32-142 43-149 (150)
64 cd02949 TRX_NTR TRX domain, no 99.6 2.7E-14 5.8E-19 104.5 9.0 91 170-265 5-97 (97)
65 cd02987 Phd_like_Phd Phosducin 99.5 3.9E-14 8.4E-19 114.4 9.7 106 159-267 61-174 (175)
66 PLN00410 U5 snRNP protein, DIM 99.5 4.1E-14 8.9E-19 108.9 9.1 98 166-268 10-120 (142)
67 cd03005 PDI_a_ERp46 PDIa famil 99.5 2.7E-14 5.8E-19 105.4 7.6 97 34-137 2-102 (102)
68 cd02993 PDI_a_APS_reductase PD 99.5 3.1E-14 6.8E-19 106.4 8.1 101 33-137 2-109 (109)
69 KOG1731 FAD-dependent sulfhydr 99.5 6E-14 1.3E-18 127.3 11.3 236 31-283 38-284 (606)
70 TIGR01126 pdi_dom protein disu 99.5 4.4E-14 9.6E-19 104.1 8.2 98 37-140 1-101 (102)
71 cd02984 TRX_PICOT TRX domain, 99.5 4.6E-14 1E-18 103.2 8.2 92 167-264 2-96 (97)
72 cd02953 DsbDgamma DsbD gamma f 99.5 1.1E-13 2.3E-18 102.6 8.6 91 168-264 2-103 (104)
73 cd02988 Phd_like_VIAF Phosduci 99.5 1.3E-13 2.7E-18 112.9 9.1 105 159-267 81-191 (192)
74 cd02998 PDI_a_ERp38 PDIa famil 99.5 1.8E-13 3.9E-18 101.4 9.1 100 34-137 2-105 (105)
75 cd02986 DLP Dim1 family, Dim1- 99.5 9.3E-14 2E-18 102.1 7.2 76 168-245 3-81 (114)
76 PF13848 Thioredoxin_6: Thiore 99.5 2.7E-12 5.9E-17 105.1 16.7 172 65-266 7-184 (184)
77 PRK09381 trxA thioredoxin; Pro 99.5 3.1E-13 6.8E-18 101.0 10.1 105 31-141 2-108 (109)
78 PTZ00443 Thioredoxin domain-co 99.5 1.3E-13 2.8E-18 115.1 8.5 106 31-142 29-140 (224)
79 cd02975 PfPDO_like_N Pyrococcu 99.5 2.4E-13 5.3E-18 102.1 9.1 90 176-269 20-111 (113)
80 cd02995 PDI_a_PDI_a'_C PDIa fa 99.5 2.5E-13 5.4E-18 100.5 8.9 98 34-137 2-104 (104)
81 KOG4277 Uncharacterized conser 99.5 5.9E-14 1.3E-18 117.5 5.9 94 177-274 42-138 (468)
82 PTZ00051 thioredoxin; Provisio 99.5 2.6E-13 5.6E-18 99.4 8.5 91 162-260 2-95 (98)
83 KOG0912 Thiol-disulfide isomer 99.5 8.5E-14 1.8E-18 116.8 6.4 106 166-274 2-112 (375)
84 cd02997 PDI_a_PDIR PDIa family 99.4 3.7E-13 8.1E-18 99.6 8.4 100 34-137 2-104 (104)
85 cd02999 PDI_a_ERp44_like PDIa 99.4 2.9E-13 6.3E-18 99.4 7.3 82 48-137 17-100 (100)
86 KOG0908 Thioredoxin-like prote 99.4 5.7E-13 1.2E-17 109.0 8.3 101 162-269 3-107 (288)
87 PRK10996 thioredoxin 2; Provis 99.4 8.1E-13 1.8E-17 103.0 8.7 104 31-140 34-138 (139)
88 cd02961 PDI_a_family Protein D 99.4 4.2E-13 9.1E-18 98.3 6.8 97 36-137 2-101 (101)
89 cd02956 ybbN ybbN protein fami 99.4 1.3E-12 2.7E-17 95.4 8.6 92 41-138 2-96 (96)
90 TIGR01295 PedC_BrcD bacterioci 99.4 1.3E-12 2.8E-17 99.3 8.8 96 162-265 8-121 (122)
91 cd02947 TRX_family TRX family; 99.4 1.8E-12 4E-17 93.2 9.2 89 169-264 2-92 (93)
92 TIGR00424 APS_reduc 5'-adenyly 99.4 1.2E-12 2.5E-17 120.0 9.9 107 30-140 349-462 (463)
93 cd02982 PDI_b'_family Protein 99.4 1.4E-12 3E-17 96.4 8.5 93 45-140 8-102 (103)
94 COG3118 Thioredoxin domain-con 99.4 1.3E-12 2.8E-17 110.5 9.1 107 31-143 22-132 (304)
95 cd02963 TRX_DnaJ TRX domain, D 99.4 7.8E-13 1.7E-17 99.1 6.8 86 48-139 23-110 (111)
96 cd02965 HyaE HyaE family; HyaE 99.4 2.6E-12 5.6E-17 94.6 9.3 96 33-134 11-109 (111)
97 PTZ00062 glutaredoxin; Provisi 99.4 3.5E-12 7.6E-17 104.8 11.0 156 40-238 7-174 (204)
98 PTZ00062 glutaredoxin; Provisi 99.4 3.5E-12 7.6E-17 104.8 9.5 91 166-269 5-95 (204)
99 cd02992 PDI_a_QSOX PDIa family 99.3 4.5E-12 9.8E-17 95.4 8.7 100 33-135 2-110 (114)
100 PLN02309 5'-adenylylsulfate re 99.3 3.3E-12 7.2E-17 117.0 9.4 105 31-140 344-456 (457)
101 cd03000 PDI_a_TMX3 PDIa family 99.3 6.9E-12 1.5E-16 92.9 9.4 93 40-140 7-103 (104)
102 cd02951 SoxW SoxW family; SoxW 99.3 4.3E-12 9.3E-17 97.3 8.2 96 170-271 6-122 (125)
103 cd02982 PDI_b'_family Protein 99.3 7.6E-12 1.7E-16 92.4 8.7 84 178-267 12-102 (103)
104 cd02950 TxlA TRX-like protein 99.3 1E-11 2.2E-16 97.1 9.8 102 40-144 11-113 (142)
105 PHA02278 thioredoxin-like prot 99.3 4.4E-12 9.6E-17 93.2 6.6 94 40-136 5-100 (103)
106 TIGR01068 thioredoxin thioredo 99.3 9.1E-12 2E-16 91.4 8.1 97 38-140 2-100 (101)
107 cd02954 DIM1 Dim1 family; Dim1 99.3 4.9E-12 1.1E-16 93.8 6.1 73 41-118 4-79 (114)
108 cd02952 TRP14_like Human TRX-r 99.3 1.6E-11 3.4E-16 92.2 8.0 91 166-264 8-118 (119)
109 cd02959 ERp19 Endoplasmic reti 99.3 7.4E-12 1.6E-16 94.5 6.1 91 175-265 16-110 (117)
110 cd02989 Phd_like_TxnDC9 Phosdu 99.3 3.6E-11 7.8E-16 90.2 9.3 100 32-137 4-112 (113)
111 cd02957 Phd_like Phosducin (Ph 99.3 2.8E-11 6E-16 91.0 8.3 81 31-118 3-87 (113)
112 cd02962 TMX2 TMX2 family; comp 99.3 2.2E-11 4.8E-16 95.7 7.9 82 32-118 28-119 (152)
113 TIGR00411 redox_disulf_1 small 99.3 4.8E-11 1E-15 84.2 9.0 79 181-268 2-82 (82)
114 PLN00410 U5 snRNP protein, DIM 99.3 2.6E-11 5.7E-16 93.4 8.1 103 39-145 11-124 (142)
115 cd02985 TRX_CDSP32 TRX family, 99.3 1.6E-11 3.5E-16 90.7 6.7 95 40-139 4-101 (103)
116 cd02948 TRX_NDPK TRX domain, T 99.2 2E-11 4.3E-16 90.1 7.1 94 38-139 6-101 (102)
117 cd02953 DsbDgamma DsbD gamma f 99.2 3.8E-11 8.2E-16 88.9 7.4 97 40-138 2-104 (104)
118 KOG1731 FAD-dependent sulfhydr 99.2 1.8E-11 4E-16 111.4 6.7 118 151-268 30-153 (606)
119 cd03072 PDI_b'_ERp44 PDIb' fam 99.2 6.8E-11 1.5E-15 88.2 8.7 107 34-144 1-111 (111)
120 KOG0907 Thioredoxin [Posttrans 99.2 1.7E-10 3.7E-15 84.9 8.0 83 49-139 21-104 (106)
121 cd02975 PfPDO_like_N Pyrococcu 99.1 2.1E-10 4.5E-15 86.1 8.4 90 47-142 20-111 (113)
122 cd02984 TRX_PICOT TRX domain, 99.1 1.2E-10 2.5E-15 85.0 6.7 91 40-137 3-96 (97)
123 PF01216 Calsequestrin: Calseq 99.1 6.3E-09 1.4E-13 89.6 17.4 216 31-279 33-258 (383)
124 TIGR03143 AhpF_homolog putativ 99.1 4.2E-09 9.1E-14 100.8 18.3 180 53-264 369-554 (555)
125 cd02986 DLP Dim1 family, Dim1- 99.1 4.8E-10 1E-14 82.5 8.5 89 48-141 13-111 (114)
126 TIGR02187 GlrX_arch Glutaredox 99.1 2.7E-10 5.8E-15 95.7 8.2 89 178-269 19-112 (215)
127 cd02987 Phd_like_Phd Phosducin 99.1 4.5E-10 9.8E-15 90.8 8.8 102 31-139 61-173 (175)
128 cd02949 TRX_NTR TRX domain, no 99.1 5E-10 1.1E-14 81.7 8.1 86 47-138 11-97 (97)
129 TIGR00412 redox_disulf_2 small 99.1 4.7E-10 1E-14 77.8 6.2 73 182-264 2-75 (76)
130 PTZ00051 thioredoxin; Provisio 99.0 6.5E-10 1.4E-14 81.2 6.7 88 39-134 8-96 (98)
131 cd02947 TRX_family TRX family; 99.0 1.4E-09 3.1E-14 77.8 8.2 91 41-138 2-93 (93)
132 PRK00293 dipZ thiol:disulfide 99.0 1.2E-09 2.5E-14 104.3 9.8 98 166-267 459-569 (571)
133 cd02983 P5_C P5 family, C-term 99.0 1.1E-08 2.4E-13 78.5 11.9 111 32-147 2-121 (130)
134 TIGR01295 PedC_BrcD bacterioci 99.0 1.5E-09 3.2E-14 82.5 7.0 101 33-138 7-121 (122)
135 KOG0908 Thioredoxin-like prote 98.9 3.6E-09 7.8E-14 86.9 8.5 97 38-142 8-107 (288)
136 PRK14018 trifunctional thiored 98.9 3.5E-09 7.7E-14 98.5 8.7 87 175-265 53-170 (521)
137 cd02951 SoxW SoxW family; SoxW 98.9 4E-09 8.7E-14 80.7 7.6 100 43-144 7-122 (125)
138 PF13098 Thioredoxin_2: Thiore 98.9 8.2E-10 1.8E-14 82.8 3.5 84 176-264 3-112 (112)
139 TIGR00411 redox_disulf_1 small 98.9 9.1E-09 2E-13 72.4 8.6 78 53-140 3-81 (82)
140 TIGR02738 TrbB type-F conjugat 98.9 7.9E-09 1.7E-13 81.5 9.1 86 178-267 50-152 (153)
141 PHA02125 thioredoxin-like prot 98.9 4.7E-09 1E-13 72.6 6.2 67 182-262 2-71 (75)
142 cd03073 PDI_b'_ERp72_ERp57 PDI 98.9 8.1E-09 1.8E-13 76.9 7.7 102 34-141 1-111 (111)
143 cd02988 Phd_like_VIAF Phosduci 98.9 1E-08 2.2E-13 84.1 9.0 102 29-139 79-190 (192)
144 TIGR02740 TraF-like TraF-like 98.9 8.1E-09 1.8E-13 89.3 8.5 89 177-269 165-265 (271)
145 cd02955 SSP411 TRX domain, SSP 98.8 1.4E-08 3.1E-13 77.0 7.9 69 175-245 12-94 (124)
146 PRK03147 thiol-disulfide oxido 98.8 4.1E-08 9E-13 79.5 10.4 104 160-267 44-171 (173)
147 PRK11509 hydrogenase-1 operon 98.8 4E-08 8.6E-13 74.6 9.5 104 33-143 18-126 (132)
148 PRK15412 thiol:disulfide inter 98.8 2.7E-08 5.8E-13 81.5 8.5 85 176-268 66-176 (185)
149 TIGR00385 dsbE periplasmic pro 98.8 4.8E-08 1E-12 79.2 9.6 86 176-269 61-172 (173)
150 PF13905 Thioredoxin_8: Thiore 98.8 2.6E-08 5.6E-13 72.3 7.1 66 178-243 1-93 (95)
151 cd02964 TryX_like_family Trypa 98.8 2.7E-08 5.9E-13 76.9 7.6 68 177-244 16-111 (132)
152 cd03009 TryX_like_TryX_NRX Try 98.8 2.8E-08 6.1E-13 76.6 7.4 68 177-244 17-112 (131)
153 PRK11509 hydrogenase-1 operon 98.7 1.4E-07 3E-12 71.7 10.3 104 164-272 21-128 (132)
154 cd02952 TRP14_like Human TRX-r 98.7 3E-08 6.4E-13 74.5 6.5 68 49-118 21-101 (119)
155 KOG0913 Thiol-disulfide isomer 98.7 7.8E-09 1.7E-13 84.3 3.5 102 160-269 24-127 (248)
156 cd03008 TryX_like_RdCVF Trypar 98.7 3.2E-08 7E-13 77.1 6.7 68 177-244 24-124 (146)
157 cd02973 TRX_GRX_like Thioredox 98.7 4.6E-08 1E-12 66.0 6.2 55 181-238 2-58 (67)
158 cd03010 TlpA_like_DsbE TlpA-li 98.7 5.6E-08 1.2E-12 74.5 7.1 77 177-260 24-126 (127)
159 cd03011 TlpA_like_ScsD_MtbDsbE 98.7 1.1E-07 2.5E-12 72.3 8.7 92 163-262 6-120 (123)
160 cd02966 TlpA_like_family TlpA- 98.7 8.8E-08 1.9E-12 71.4 7.6 66 178-244 19-110 (116)
161 PLN02919 haloacid dehalogenase 98.7 5.6E-08 1.2E-12 99.0 8.0 89 177-269 419-537 (1057)
162 KOG0914 Thioredoxin-like prote 98.6 3.9E-08 8.5E-13 79.2 5.2 93 159-252 123-226 (265)
163 cd02958 UAS UAS family; UAS is 98.6 3.3E-07 7.1E-12 68.9 9.2 89 175-268 14-111 (114)
164 COG4232 Thiol:disulfide interc 98.6 9.9E-08 2.1E-12 88.4 7.3 103 163-267 457-567 (569)
165 cd03026 AhpF_NTD_C TRX-GRX-lik 98.6 2E-07 4.3E-12 66.6 7.3 74 178-261 12-87 (89)
166 PF01216 Calsequestrin: Calseq 98.6 6.2E-06 1.3E-10 71.5 17.3 240 4-274 119-374 (383)
167 PRK15317 alkyl hydroperoxide r 98.6 3.1E-06 6.7E-11 80.6 17.1 175 51-268 20-198 (517)
168 cd02960 AGR Anterior Gradient 98.6 4E-07 8.7E-12 69.1 8.6 69 175-246 20-94 (130)
169 cd02967 mauD Methylamine utili 98.6 2.7E-07 5.9E-12 69.2 7.4 40 177-218 20-59 (114)
170 PRK13728 conjugal transfer pro 98.5 5.8E-07 1.3E-11 72.3 8.9 84 182-270 73-173 (181)
171 PF02114 Phosducin: Phosducin; 98.5 6.3E-07 1.4E-11 77.0 9.0 111 160-273 125-243 (265)
172 PF13899 Thioredoxin_7: Thiore 98.5 1.4E-07 3E-12 66.5 3.6 64 175-240 14-81 (82)
173 smart00594 UAS UAS domain. 98.4 1.8E-06 3.9E-11 65.7 9.4 94 169-264 15-121 (122)
174 TIGR03140 AhpF alkyl hydropero 98.4 1.6E-05 3.5E-10 75.6 17.3 176 51-268 20-199 (515)
175 cd03012 TlpA_like_DipZ_like Tl 98.4 1.2E-06 2.6E-11 67.1 6.7 43 177-220 22-64 (126)
176 PF13098 Thioredoxin_2: Thiore 98.4 5.1E-07 1.1E-11 67.5 4.5 88 48-137 4-112 (112)
177 PRK03147 thiol-disulfide oxido 98.4 4.6E-06 1E-10 67.4 10.3 91 48-140 60-171 (173)
178 PLN02399 phospholipid hydroper 98.4 2.9E-06 6.3E-11 71.6 9.3 88 177-268 98-234 (236)
179 cd02973 TRX_GRX_like Thioredox 98.3 2.2E-06 4.8E-11 57.7 6.7 55 53-113 3-58 (67)
180 cd03067 PDI_b_PDIR_N PDIb fami 98.3 1.4E-06 3E-11 61.5 5.5 95 40-139 10-110 (112)
181 PTZ00056 glutathione peroxidas 98.3 2.1E-06 4.5E-11 71.1 7.3 44 177-221 38-81 (199)
182 TIGR02661 MauD methylamine deh 98.3 4.1E-06 8.8E-11 68.9 8.9 84 177-266 73-177 (189)
183 TIGR00412 redox_disulf_2 small 98.3 3E-06 6.5E-11 58.6 6.8 72 53-137 2-75 (76)
184 PRK14018 trifunctional thiored 98.3 6.4E-06 1.4E-10 77.1 10.9 90 45-139 52-171 (521)
185 TIGR02740 TraF-like TraF-like 98.3 6.2E-06 1.3E-10 71.5 9.6 92 49-142 166-265 (271)
186 PRK00293 dipZ thiol:disulfide 98.3 4.4E-06 9.5E-11 80.1 9.5 90 48-140 473-569 (571)
187 PF07912 ERp29_N: ERp29, N-ter 98.3 3.5E-05 7.5E-10 57.0 11.8 105 161-270 5-121 (126)
188 cd02959 ERp19 Endoplasmic reti 98.2 2.5E-06 5.4E-11 64.3 4.9 95 45-141 15-113 (117)
189 PHA02125 thioredoxin-like prot 98.2 8.2E-06 1.8E-10 56.3 6.7 49 53-112 2-51 (75)
190 cd02969 PRX_like1 Peroxiredoxi 98.2 1.6E-05 3.4E-10 64.3 9.4 88 177-269 24-153 (171)
191 PLN02412 probable glutathione 98.1 1.6E-05 3.4E-10 64.0 9.1 89 177-269 28-165 (167)
192 KOG2603 Oligosaccharyltransfer 98.1 2.3E-05 4.9E-10 67.1 10.2 120 159-278 39-177 (331)
193 PF08534 Redoxin: Redoxin; In 98.1 5.9E-06 1.3E-10 64.9 6.3 68 177-245 27-127 (146)
194 cd03011 TlpA_like_ScsD_MtbDsbE 98.1 1.9E-05 4E-10 60.0 8.2 83 48-135 19-120 (123)
195 COG0526 TrxA Thiol-disulfide i 98.1 1.3E-05 2.8E-10 59.5 7.2 66 178-245 32-102 (127)
196 TIGR02540 gpx7 putative glutat 98.1 1.9E-05 4E-10 62.6 8.3 43 177-220 21-63 (153)
197 cd03010 TlpA_like_DsbE TlpA-li 98.0 2E-05 4.3E-10 60.3 7.5 81 49-133 25-126 (127)
198 cd02966 TlpA_like_family TlpA- 98.0 3E-05 6.4E-10 57.5 8.2 75 49-125 19-115 (116)
199 cd02955 SSP411 TRX domain, SSP 98.0 1.6E-05 3.5E-10 60.3 6.6 76 39-119 5-92 (124)
200 TIGR02738 TrbB type-F conjugat 98.0 5.4E-05 1.2E-09 59.8 9.7 89 48-140 49-152 (153)
201 TIGR02196 GlrX_YruB Glutaredox 98.0 1.2E-05 2.6E-10 54.8 5.4 67 182-265 2-74 (74)
202 cd01659 TRX_superfamily Thiore 98.0 2E-05 4.3E-10 51.5 6.2 58 182-242 1-63 (69)
203 cd03026 AhpF_NTD_C TRX-GRX-lik 98.0 3.8E-05 8.2E-10 54.8 7.8 71 52-133 15-86 (89)
204 PF13192 Thioredoxin_3: Thiore 98.0 2.7E-05 5.9E-10 53.8 6.9 71 184-265 4-76 (76)
205 cd02958 UAS UAS family; UAS is 98.0 5.8E-05 1.3E-09 56.6 9.1 93 47-142 15-112 (114)
206 PF07912 ERp29_N: ERp29, N-ter 98.0 0.00014 3.1E-09 53.8 10.3 108 33-141 5-119 (126)
207 KOG0914 Thioredoxin-like prote 98.0 9.6E-06 2.1E-10 65.7 4.3 83 33-118 125-216 (265)
208 cd02981 PDI_b_family Protein D 97.9 5.9E-05 1.3E-09 54.6 8.1 88 170-267 10-97 (97)
209 TIGR01626 ytfJ_HI0045 conserve 97.9 3.5E-05 7.7E-10 62.4 7.3 83 177-262 58-174 (184)
210 TIGR00385 dsbE periplasmic pro 97.9 5.7E-05 1.2E-09 61.1 8.6 90 48-142 62-172 (173)
211 PF13728 TraF: F plasmid trans 97.9 5E-05 1.1E-09 63.5 7.9 84 178-264 120-214 (215)
212 PRK15412 thiol:disulfide inter 97.9 8.6E-05 1.9E-09 60.8 9.3 90 48-142 67-177 (185)
213 TIGR02200 GlrX_actino Glutared 97.9 3.9E-05 8.4E-10 52.9 5.6 54 182-244 2-62 (77)
214 PF13905 Thioredoxin_8: Thiore 97.9 4.5E-05 9.8E-10 55.0 6.1 66 50-117 2-92 (95)
215 PF06110 DUF953: Eukaryotic pr 97.8 6.9E-05 1.5E-09 56.1 6.7 66 176-243 17-100 (119)
216 cd03009 TryX_like_TryX_NRX Try 97.8 6.7E-05 1.4E-09 57.7 6.9 69 48-118 17-110 (131)
217 PTZ00256 glutathione peroxidas 97.8 0.00013 2.9E-09 59.5 8.7 44 177-221 39-83 (183)
218 cd00340 GSH_Peroxidase Glutath 97.8 4.8E-05 1E-09 60.2 5.8 43 177-221 21-63 (152)
219 TIGR02739 TraF type-F conjugat 97.8 0.00018 3.9E-09 61.4 8.9 87 178-267 150-247 (256)
220 PRK13728 conjugal transfer pro 97.7 0.00024 5.2E-09 57.3 9.1 86 53-142 73-172 (181)
221 smart00594 UAS UAS domain. 97.7 0.00018 3.9E-09 54.6 7.3 88 47-137 25-121 (122)
222 PRK11200 grxA glutaredoxin 1; 97.7 0.00019 4.2E-09 50.7 7.0 75 181-269 2-84 (85)
223 PF02114 Phosducin: Phosducin; 97.7 0.00018 3.8E-09 62.0 7.9 103 31-140 124-237 (265)
224 KOG0913 Thiol-disulfide isomer 97.7 2.4E-05 5.2E-10 64.3 2.4 99 33-140 25-125 (248)
225 cd03072 PDI_b'_ERp44 PDIb' fam 97.7 0.00042 9.1E-09 51.6 8.9 102 162-269 1-109 (111)
226 PLN02919 haloacid dehalogenase 97.7 0.00024 5.3E-09 72.9 9.9 93 48-142 419-537 (1057)
227 cd02964 TryX_like_family Trypa 97.7 0.00021 4.6E-09 55.0 7.4 69 48-118 16-110 (132)
228 PF00578 AhpC-TSA: AhpC/TSA fa 97.6 0.0002 4.2E-09 54.3 7.0 68 177-245 24-121 (124)
229 KOG3425 Uncharacterized conser 97.6 0.00047 1E-08 50.6 8.3 72 168-241 13-104 (128)
230 PRK13703 conjugal pilus assemb 97.6 0.00038 8.3E-09 59.0 9.1 87 178-267 143-240 (248)
231 KOG0911 Glutaredoxin-related p 97.6 0.00015 3.3E-09 59.4 6.2 175 48-244 16-204 (227)
232 cd02991 UAS_ETEA UAS family, E 97.6 0.00041 9E-09 52.0 7.9 91 175-268 14-113 (116)
233 KOG2501 Thioredoxin, nucleored 97.6 7.2E-05 1.6E-09 58.2 3.4 69 177-245 32-129 (157)
234 cd03017 PRX_BCP Peroxiredoxin 97.5 0.00027 5.8E-09 54.8 6.6 44 178-222 23-67 (140)
235 cd02967 mauD Methylamine utili 97.5 0.0002 4.3E-09 53.5 5.6 60 49-111 21-82 (114)
236 KOG1672 ATP binding protein [P 97.5 0.0003 6.5E-09 56.2 6.4 103 161-267 67-177 (211)
237 cd03008 TryX_like_RdCVF Trypar 97.4 0.0005 1.1E-08 53.7 6.8 69 48-118 24-123 (146)
238 cd02981 PDI_b_family Protein D 97.4 0.00067 1.5E-08 49.0 7.0 87 42-139 10-96 (97)
239 cd02983 P5_C P5 family, C-term 97.4 0.0039 8.5E-08 47.8 11.5 109 161-272 3-119 (130)
240 COG4232 Thiol:disulfide interc 97.4 0.00034 7.3E-09 65.4 6.1 103 35-140 457-567 (569)
241 KOG1672 ATP binding protein [P 97.4 0.00044 9.4E-09 55.3 5.8 104 30-139 64-176 (211)
242 TIGR02180 GRX_euk Glutaredoxin 97.4 0.00027 5.9E-09 49.5 4.2 56 182-243 1-63 (84)
243 TIGR02183 GRXA Glutaredoxin, G 97.3 0.00083 1.8E-08 47.5 6.0 77 181-271 1-85 (86)
244 PF13728 TraF: F plasmid trans 97.3 0.0016 3.4E-08 54.5 8.6 83 51-135 122-212 (215)
245 cd03012 TlpA_like_DipZ_like Tl 97.3 0.0016 3.5E-08 49.5 8.1 75 48-124 22-122 (126)
246 cd02968 SCO SCO (an acronym fo 97.3 0.00071 1.5E-08 52.6 5.9 46 177-222 21-69 (142)
247 PF14595 Thioredoxin_9: Thiore 97.3 0.0004 8.6E-09 53.2 4.3 63 177-242 40-107 (129)
248 cd02969 PRX_like1 Peroxiredoxi 97.3 0.0037 8E-08 50.3 10.2 97 48-146 24-157 (171)
249 cd03073 PDI_b'_ERp72_ERp57 PDI 97.2 0.0023 5E-08 47.6 8.1 96 164-267 3-110 (111)
250 PLN02399 phospholipid hydroper 97.2 0.0024 5.2E-08 54.0 9.2 95 48-142 98-235 (236)
251 COG2143 Thioredoxin-related pr 97.2 0.0044 9.6E-08 47.9 9.2 86 174-264 38-145 (182)
252 PTZ00056 glutathione peroxidas 97.2 0.0029 6.4E-08 52.3 8.9 92 48-142 38-179 (199)
253 PRK10606 btuE putative glutath 97.2 0.00085 1.8E-08 54.6 5.5 44 177-222 24-67 (183)
254 KOG0911 Glutaredoxin-related p 97.1 0.00034 7.3E-09 57.4 3.0 74 174-253 13-88 (227)
255 PRK09437 bcp thioredoxin-depen 97.1 0.0016 3.5E-08 51.4 6.3 45 177-222 29-74 (154)
256 PF13192 Thioredoxin_3: Thiore 97.1 0.0046 9.9E-08 42.6 7.6 71 55-138 4-76 (76)
257 cd02970 PRX_like2 Peroxiredoxi 97.0 0.0017 3.6E-08 50.8 6.0 47 178-225 23-70 (149)
258 TIGR02739 TraF type-F conjugat 97.0 0.0068 1.5E-07 51.8 9.6 90 51-142 152-249 (256)
259 TIGR02661 MauD methylamine deh 97.0 0.0062 1.3E-07 50.0 9.2 91 48-142 73-180 (189)
260 cd01659 TRX_superfamily Thiore 97.0 0.0029 6.3E-08 40.7 5.8 59 53-117 1-63 (69)
261 cd03014 PRX_Atyp2cys Peroxired 96.9 0.0022 4.8E-08 49.9 5.9 43 177-222 25-68 (143)
262 cd03018 PRX_AhpE_like Peroxire 96.9 0.0022 4.9E-08 50.2 6.0 43 179-222 29-72 (149)
263 PF08534 Redoxin: Redoxin; In 96.9 0.0024 5.3E-08 49.8 6.1 80 48-129 27-136 (146)
264 PRK00522 tpx lipid hydroperoxi 96.9 0.0023 5.1E-08 51.4 6.1 43 177-222 43-86 (167)
265 PRK10382 alkyl hydroperoxide r 96.9 0.0065 1.4E-07 49.7 8.6 91 177-268 30-156 (187)
266 cd02991 UAS_ETEA UAS family, E 96.9 0.0034 7.3E-08 47.1 6.3 92 47-142 15-114 (116)
267 PLN02412 probable glutathione 96.9 0.009 1.9E-07 48.0 9.2 42 48-89 28-71 (167)
268 KOG3414 Component of the U4/U6 96.9 0.0053 1.2E-07 45.5 6.9 78 166-245 10-90 (142)
269 cd02976 NrdH NrdH-redoxin (Nrd 96.9 0.0027 5.9E-08 42.7 5.1 65 182-263 2-72 (73)
270 PRK13703 conjugal pilus assemb 96.9 0.011 2.3E-07 50.4 9.6 91 51-143 145-243 (248)
271 KOG3171 Conserved phosducin-li 96.8 0.0038 8.3E-08 50.7 6.3 106 160-268 138-251 (273)
272 cd03015 PRX_Typ2cys Peroxiredo 96.8 0.0025 5.4E-08 51.5 5.3 87 177-267 28-156 (173)
273 cd03067 PDI_b_PDIR_N PDIb fami 96.8 0.0057 1.2E-07 43.6 6.2 94 166-266 8-110 (112)
274 KOG2603 Oligosaccharyltransfer 96.8 0.027 5.8E-07 48.7 11.3 119 19-142 27-167 (331)
275 TIGR02190 GlrX-dom Glutaredoxi 96.8 0.0041 8.9E-08 43.1 5.4 56 178-243 6-66 (79)
276 COG0526 TrxA Thiol-disulfide i 96.7 0.008 1.7E-07 44.0 7.4 65 49-118 32-100 (127)
277 TIGR03137 AhpC peroxiredoxin. 96.7 0.0031 6.6E-08 51.7 5.2 88 177-267 30-155 (187)
278 PRK13190 putative peroxiredoxi 96.7 0.0092 2E-07 49.5 8.1 91 178-269 27-155 (202)
279 cd02971 PRX_family Peroxiredox 96.7 0.0038 8.3E-08 48.2 5.4 45 177-222 21-66 (140)
280 PF03190 Thioredox_DsbH: Prote 96.6 0.004 8.6E-08 49.2 5.0 74 168-244 28-115 (163)
281 PRK10329 glutaredoxin-like pro 96.6 0.011 2.3E-07 41.2 6.7 71 182-269 3-78 (81)
282 TIGR02196 GlrX_YruB Glutaredox 96.6 0.0085 1.8E-07 40.3 6.1 70 53-137 2-73 (74)
283 PF00462 Glutaredoxin: Glutare 96.6 0.0034 7.4E-08 40.9 3.8 49 182-238 1-55 (60)
284 PF13899 Thioredoxin_7: Thiore 96.6 0.0021 4.5E-08 45.0 2.8 64 46-115 14-81 (82)
285 KOG3170 Conserved phosducin-li 96.5 0.012 2.7E-07 47.4 6.8 106 159-268 90-201 (240)
286 TIGR02540 gpx7 putative glutat 96.4 0.023 5E-07 44.8 8.6 40 49-88 22-63 (153)
287 KOG3170 Conserved phosducin-li 96.4 0.033 7.2E-07 45.0 9.0 109 23-140 82-200 (240)
288 cd02960 AGR Anterior Gradient 96.4 0.015 3.2E-07 44.3 6.8 70 45-120 19-92 (130)
289 PF07449 HyaE: Hydrogenase-1 e 96.4 0.0063 1.4E-07 44.6 4.5 82 32-118 9-93 (107)
290 PRK10877 protein disulfide iso 96.3 0.0064 1.4E-07 51.6 5.1 79 177-267 106-230 (232)
291 cd03029 GRX_hybridPRX5 Glutare 96.3 0.013 2.9E-07 39.6 5.6 64 182-264 3-71 (72)
292 cd00340 GSH_Peroxidase Glutath 96.3 0.021 4.5E-07 45.0 7.4 40 49-89 22-63 (152)
293 cd03069 PDI_b_ERp57 PDIb famil 96.2 0.032 6.9E-07 40.9 7.7 91 168-267 9-103 (104)
294 cd03069 PDI_b_ERp57 PDIb famil 96.2 0.022 4.7E-07 41.8 6.8 88 41-140 10-103 (104)
295 cd03066 PDI_b_Calsequestrin_mi 96.2 0.034 7.4E-07 40.6 7.7 91 39-140 8-100 (102)
296 TIGR03143 AhpF_homolog putativ 96.2 0.019 4.1E-07 55.4 8.0 117 9-137 434-554 (555)
297 cd02066 GRX_family Glutaredoxi 96.1 0.011 2.3E-07 39.6 4.5 49 182-238 2-56 (72)
298 COG2143 Thioredoxin-related pr 96.1 0.04 8.6E-07 42.8 7.8 90 47-138 40-146 (182)
299 TIGR01626 ytfJ_HI0045 conserve 96.1 0.044 9.5E-07 44.5 8.6 85 49-137 59-176 (184)
300 PF00578 AhpC-TSA: AhpC/TSA fa 96.1 0.018 4E-07 43.3 6.2 44 48-91 24-70 (124)
301 cd03419 GRX_GRXh_1_2_like Glut 96.1 0.0095 2E-07 41.3 4.2 54 182-243 2-62 (82)
302 cd03066 PDI_b_Calsequestrin_mi 96.1 0.065 1.4E-06 39.1 8.7 97 162-267 2-100 (102)
303 cd03015 PRX_Typ2cys Peroxiredo 96.1 0.061 1.3E-06 43.3 9.3 92 49-140 29-156 (173)
304 TIGR02194 GlrX_NrdH Glutaredox 96.1 0.018 3.9E-07 39.0 5.3 64 183-262 2-70 (72)
305 KOG2501 Thioredoxin, nucleored 95.9 0.026 5.6E-07 44.1 6.1 68 49-118 33-126 (157)
306 PF02966 DIM1: Mitosis protein 95.8 0.067 1.5E-06 40.4 7.7 75 167-244 8-86 (133)
307 PTZ00256 glutathione peroxidas 95.8 0.097 2.1E-06 42.6 9.4 41 49-89 40-83 (183)
308 PF05768 DUF836: Glutaredoxin- 95.7 0.02 4.3E-07 39.9 4.4 79 181-265 1-81 (81)
309 cd03020 DsbA_DsbC_DsbG DsbA fa 95.7 0.052 1.1E-06 44.8 7.7 26 177-202 76-101 (197)
310 cd03027 GRX_DEP Glutaredoxin ( 95.7 0.019 4.2E-07 38.9 4.3 49 182-238 3-57 (73)
311 PRK15317 alkyl hydroperoxide r 95.7 0.044 9.5E-07 52.4 8.0 121 8-140 73-197 (517)
312 cd03074 PDI_b'_Calsequestrin_C 95.6 0.18 3.9E-06 36.5 9.0 86 52-141 23-120 (120)
313 cd03418 GRX_GRXb_1_3_like Glut 95.6 0.022 4.7E-07 38.8 4.2 49 182-238 2-57 (75)
314 TIGR02181 GRX_bact Glutaredoxi 95.6 0.015 3.2E-07 40.2 3.3 49 182-238 1-55 (79)
315 TIGR02200 GlrX_actino Glutared 95.5 0.037 7.9E-07 37.7 5.2 68 53-137 2-75 (77)
316 PRK15000 peroxidase; Provision 95.4 0.032 7E-07 46.1 5.5 90 177-267 33-161 (200)
317 KOG3414 Component of the U4/U6 95.4 0.17 3.7E-06 37.8 8.4 91 51-146 24-125 (142)
318 TIGR02189 GlrX-like_plant Glut 95.4 0.03 6.5E-07 40.7 4.4 55 180-244 8-71 (99)
319 TIGR02180 GRX_euk Glutaredoxin 95.3 0.035 7.6E-07 38.5 4.7 56 53-112 1-59 (84)
320 PF07449 HyaE: Hydrogenase-1 e 95.3 0.035 7.6E-07 40.7 4.4 82 161-246 10-96 (107)
321 cd03017 PRX_BCP Peroxiredoxin 95.2 0.091 2E-06 40.4 7.2 41 49-89 23-66 (140)
322 TIGR00365 monothiol glutaredox 95.2 0.043 9.3E-07 39.7 4.9 53 178-238 11-73 (97)
323 TIGR03137 AhpC peroxiredoxin. 95.2 0.16 3.5E-06 41.5 8.8 92 49-140 31-155 (187)
324 PHA03050 glutaredoxin; Provisi 95.2 0.04 8.6E-07 40.7 4.7 53 181-238 14-75 (108)
325 cd03014 PRX_Atyp2cys Peroxired 95.2 0.047 1E-06 42.3 5.4 57 49-106 26-84 (143)
326 cd03028 GRX_PICOT_like Glutare 95.0 0.053 1.2E-06 38.5 4.9 56 178-243 7-72 (90)
327 PRK00522 tpx lipid hydroperoxi 94.7 0.075 1.6E-06 42.6 5.5 55 49-104 44-100 (167)
328 cd02970 PRX_like2 Peroxiredoxi 94.7 0.15 3.2E-06 39.6 7.0 54 50-103 24-80 (149)
329 PF11009 DUF2847: Protein of u 94.7 0.027 5.7E-07 41.1 2.5 94 39-133 7-104 (105)
330 PTZ00137 2-Cys peroxiredoxin; 94.7 0.074 1.6E-06 45.8 5.6 90 177-267 97-224 (261)
331 PRK13191 putative peroxiredoxi 94.6 0.066 1.4E-06 44.8 5.1 89 178-267 33-160 (215)
332 cd03016 PRX_1cys Peroxiredoxin 94.6 0.059 1.3E-06 44.7 4.8 42 180-222 28-69 (203)
333 cd02972 DsbA_family DsbA famil 94.6 0.11 2.5E-06 36.6 5.8 36 182-219 1-36 (98)
334 KOG3171 Conserved phosducin-li 94.5 0.096 2.1E-06 42.8 5.5 101 33-140 139-250 (273)
335 PRK10382 alkyl hydroperoxide r 94.5 0.3 6.4E-06 40.0 8.6 92 49-140 31-155 (187)
336 PRK13599 putative peroxiredoxi 94.4 0.084 1.8E-06 44.2 5.3 89 178-267 28-155 (215)
337 TIGR03140 AhpF alkyl hydropero 94.4 0.2 4.3E-06 47.9 8.5 122 8-141 74-199 (515)
338 PF14595 Thioredoxin_9: Thiore 94.4 0.057 1.2E-06 41.3 3.9 61 51-117 43-107 (129)
339 cd03068 PDI_b_ERp72 PDIb famil 94.2 0.36 7.7E-06 35.5 7.6 94 167-267 8-107 (107)
340 PRK10638 glutaredoxin 3; Provi 94.1 0.087 1.9E-06 36.7 4.2 49 182-238 4-58 (83)
341 PRK11657 dsbG disulfide isomer 94.1 0.38 8.3E-06 41.3 8.9 29 177-205 116-144 (251)
342 PRK13189 peroxiredoxin; Provis 94.1 0.1 2.2E-06 44.0 5.0 89 177-267 34-162 (222)
343 cd03023 DsbA_Com1_like DsbA fa 94.0 0.12 2.7E-06 40.2 5.3 32 177-208 4-35 (154)
344 KOG2640 Thioredoxin [Function 94.0 0.031 6.6E-07 48.4 1.8 85 178-269 76-163 (319)
345 PTZ00253 tryparedoxin peroxida 93.9 0.13 2.9E-06 42.4 5.4 90 178-268 36-164 (199)
346 PF00837 T4_deiodinase: Iodoth 93.9 0.46 1E-05 39.9 8.5 53 158-210 80-134 (237)
347 PRK10824 glutaredoxin-4; Provi 93.8 0.12 2.6E-06 38.6 4.5 58 178-245 14-81 (115)
348 COG0695 GrxC Glutaredoxin and 93.8 0.13 2.8E-06 35.7 4.4 49 182-238 3-59 (80)
349 PRK15000 peroxidase; Provision 93.7 0.44 9.5E-06 39.4 8.3 92 49-140 34-161 (200)
350 PRK09437 bcp thioredoxin-depen 93.7 0.52 1.1E-05 36.9 8.4 43 48-90 29-74 (154)
351 PF02966 DIM1: Mitosis protein 93.7 0.66 1.4E-05 35.1 8.2 88 51-143 21-119 (133)
352 PF05768 DUF836: Glutaredoxin- 93.6 0.14 3E-06 35.6 4.3 77 54-138 2-81 (81)
353 PF11009 DUF2847: Protein of u 93.5 0.16 3.4E-06 37.1 4.5 77 167-245 7-91 (105)
354 cd03018 PRX_AhpE_like Peroxire 93.3 0.51 1.1E-05 36.6 7.7 41 50-90 29-72 (149)
355 PRK11200 grxA glutaredoxin 1; 93.2 0.25 5.3E-06 34.6 5.2 77 53-141 3-83 (85)
356 cd03068 PDI_b_ERp72 PDIb famil 92.8 0.61 1.3E-05 34.3 6.9 89 40-139 9-106 (107)
357 cd03074 PDI_b'_Calsequestrin_C 92.7 2.7 5.9E-05 30.6 9.7 103 163-267 4-119 (120)
358 PF13462 Thioredoxin_4: Thiore 92.4 0.39 8.6E-06 37.8 6.0 44 177-220 11-54 (162)
359 cd03019 DsbA_DsbA DsbA family, 92.2 0.28 6.1E-06 39.4 4.9 42 177-220 14-55 (178)
360 PRK13190 putative peroxiredoxi 92.1 0.89 1.9E-05 37.6 7.8 87 56-142 35-155 (202)
361 cd02968 SCO SCO (an acronym fo 92.0 0.39 8.4E-06 36.9 5.3 43 48-90 21-69 (142)
362 PTZ00137 2-Cys peroxiredoxin; 91.9 1.4 3E-05 38.0 9.0 90 51-140 100-224 (261)
363 PRK10877 protein disulfide iso 91.7 0.69 1.5E-05 39.2 6.9 40 94-140 191-230 (232)
364 cd02974 AhpF_NTD_N Alkyl hydro 91.5 3.4 7.3E-05 29.6 9.3 75 178-267 18-93 (94)
365 cd03016 PRX_1cys Peroxiredoxin 91.4 1.3 2.9E-05 36.6 8.2 86 56-141 33-154 (203)
366 cd02976 NrdH NrdH-redoxin (Nrd 91.2 0.7 1.5E-05 30.5 5.4 53 53-113 2-56 (73)
367 KOG1752 Glutaredoxin and relat 90.3 0.82 1.8E-05 33.4 5.2 56 181-244 15-77 (104)
368 PRK10606 btuE putative glutath 89.7 1.1 2.3E-05 36.6 6.0 59 49-111 25-94 (183)
369 PRK11657 dsbG disulfide isomer 89.7 1.7 3.6E-05 37.4 7.6 41 95-138 209-249 (251)
370 PF06110 DUF953: Eukaryotic pr 89.5 1.5 3.2E-05 32.9 6.1 68 48-117 18-99 (119)
371 cd02971 PRX_family Peroxiredox 89.1 0.82 1.8E-05 35.0 4.8 54 48-101 21-77 (140)
372 PRK12759 bifunctional gluaredo 88.9 0.58 1.3E-05 43.3 4.4 49 182-238 4-66 (410)
373 PRK13189 peroxiredoxin; Provis 88.8 2.5 5.4E-05 35.6 7.8 86 56-141 43-163 (222)
374 KOG3425 Uncharacterized conser 88.7 1.9 4.1E-05 32.1 6.0 67 48-116 24-104 (128)
375 TIGR02190 GlrX-dom Glutaredoxi 88.5 1.2 2.5E-05 30.6 4.8 55 51-113 8-63 (79)
376 PF03190 Thioredox_DsbH: Prote 88.4 0.38 8.2E-06 38.2 2.4 92 22-118 8-113 (163)
377 cd03020 DsbA_DsbC_DsbG DsbA fa 88.2 1.4 3.1E-05 36.2 5.9 37 94-137 161-197 (197)
378 TIGR02183 GRXA Glutaredoxin, G 88.1 1.5 3.3E-05 30.7 5.2 77 53-141 2-82 (86)
379 cd02974 AhpF_NTD_N Alkyl hydro 87.9 7.3 0.00016 27.9 8.6 73 51-140 20-93 (94)
380 PRK13191 putative peroxiredoxi 87.6 3 6.5E-05 34.9 7.5 85 56-140 41-160 (215)
381 PRK13599 putative peroxiredoxi 87.1 4.2 9.1E-05 34.0 8.1 86 55-140 35-155 (215)
382 PTZ00253 tryparedoxin peroxida 86.4 4.9 0.00011 33.1 8.1 92 49-140 36-163 (199)
383 PF00462 Glutaredoxin: Glutare 86.1 1.3 2.9E-05 28.4 3.7 52 54-113 2-55 (60)
384 PRK10954 periplasmic protein d 85.8 1.2 2.5E-05 37.1 4.1 40 178-219 37-79 (207)
385 cd03419 GRX_GRXh_1_2_like Glut 85.3 1.9 4.2E-05 29.4 4.5 55 53-114 2-59 (82)
386 PF06053 DUF929: Domain of unk 85.2 3.9 8.5E-05 34.9 7.0 70 161-241 45-114 (249)
387 PRK10329 glutaredoxin-like pro 85.0 4.2 9.2E-05 28.1 6.0 75 53-142 3-78 (81)
388 cd03031 GRX_GRX_like Glutaredo 84.5 1.8 3.9E-05 33.8 4.4 49 182-238 2-66 (147)
389 cd02066 GRX_family Glutaredoxi 83.6 2 4.4E-05 28.0 3.9 52 53-112 2-55 (72)
390 KOG2640 Thioredoxin [Function 83.3 1.1 2.5E-05 38.9 3.0 87 49-142 76-163 (319)
391 COG3634 AhpF Alkyl hydroperoxi 82.7 37 0.00079 30.7 12.8 162 61-266 31-196 (520)
392 cd03071 PDI_b'_NRX PDIb' famil 82.4 11 0.00023 27.6 7.1 101 36-141 3-115 (116)
393 PHA03075 glutaredoxin-like pro 82.1 1.1 2.5E-05 32.9 2.2 29 179-207 2-30 (123)
394 TIGR02194 GlrX_NrdH Glutaredox 82.0 2.7 5.8E-05 28.1 3.9 67 55-135 3-70 (72)
395 cd02972 DsbA_family DsbA famil 81.8 5 0.00011 27.8 5.6 60 54-115 2-91 (98)
396 cd03029 GRX_hybridPRX5 Glutare 80.3 4.5 9.8E-05 26.9 4.7 68 53-137 3-71 (72)
397 PF13778 DUF4174: Domain of un 79.5 18 0.00038 27.0 8.0 87 51-140 10-111 (118)
398 cd03040 GST_N_mPGES2 GST_N fam 78.8 7.9 0.00017 26.0 5.6 73 182-269 2-77 (77)
399 cd02977 ArsC_family Arsenate R 78.3 2.1 4.5E-05 31.2 2.6 78 183-268 2-87 (105)
400 cd03027 GRX_DEP Glutaredoxin ( 76.8 9 0.0002 25.5 5.3 53 53-113 3-57 (73)
401 COG4545 Glutaredoxin-related p 76.4 2.9 6.2E-05 28.3 2.5 21 183-203 5-25 (85)
402 cd02978 KaiB_like KaiB-like fa 75.2 8.9 0.00019 25.9 4.7 54 54-112 4-60 (72)
403 TIGR02189 GlrX-like_plant Glut 74.6 6.1 0.00013 28.5 4.2 56 51-115 8-68 (99)
404 cd03041 GST_N_2GST_N GST_N fam 73.8 14 0.0003 24.9 5.7 69 182-267 2-76 (77)
405 cd03035 ArsC_Yffb Arsenate Red 72.7 3.9 8.5E-05 29.9 2.8 35 183-225 2-36 (105)
406 cd03013 PRX5_like Peroxiredoxi 72.1 9.2 0.0002 30.1 5.0 47 178-225 29-78 (155)
407 cd03036 ArsC_like Arsenate Red 70.5 4.6 0.0001 29.8 2.8 77 183-267 2-87 (111)
408 cd03418 GRX_GRXb_1_3_like Glut 70.2 14 0.00031 24.4 5.1 52 53-112 2-56 (75)
409 PRK01655 spxA transcriptional 69.4 5.5 0.00012 30.4 3.1 36 182-225 2-37 (131)
410 cd03037 GST_N_GRX2 GST_N famil 69.1 16 0.00034 24.0 5.0 20 184-203 3-22 (71)
411 PRK09301 circadian clock prote 66.9 19 0.00041 26.2 5.1 67 55-128 11-79 (103)
412 COG1225 Bcp Peroxiredoxin [Pos 65.5 12 0.00027 29.5 4.4 56 49-104 30-88 (157)
413 PF02630 SCO1-SenC: SCO1/SenC; 65.4 17 0.00037 29.1 5.4 61 162-223 37-99 (174)
414 TIGR01617 arsC_related transcr 65.1 7 0.00015 29.1 2.9 77 183-268 2-88 (117)
415 COG1225 Bcp Peroxiredoxin [Pos 64.7 19 0.0004 28.5 5.2 45 177-222 29-74 (157)
416 PRK12559 transcriptional regul 64.6 8.6 0.00019 29.4 3.3 36 182-225 2-37 (131)
417 TIGR02654 circ_KaiB circadian 63.9 19 0.00042 25.3 4.6 55 55-114 8-64 (87)
418 PHA03050 glutaredoxin; Provisi 63.9 8.9 0.00019 28.2 3.2 58 51-113 13-75 (108)
419 COG2761 FrnE Predicted dithiol 63.8 16 0.00036 30.6 5.0 44 96-146 175-218 (225)
420 PF13417 GST_N_3: Glutathione 63.5 38 0.00083 22.5 6.2 69 184-269 1-72 (75)
421 cd03032 ArsC_Spx Arsenate Redu 63.0 11 0.00023 28.0 3.5 78 182-268 2-87 (115)
422 PF13743 Thioredoxin_5: Thiore 61.5 13 0.00028 30.0 4.0 34 184-219 2-35 (176)
423 cd03023 DsbA_Com1_like DsbA fa 61.1 17 0.00037 27.8 4.6 37 51-88 7-44 (154)
424 PF13462 Thioredoxin_4: Thiore 60.9 18 0.0004 28.0 4.8 40 51-90 13-56 (162)
425 cd03019 DsbA_DsbA DsbA family, 60.0 16 0.00036 28.9 4.4 39 51-89 17-56 (178)
426 COG0695 GrxC Glutaredoxin and 59.8 21 0.00045 24.5 4.3 52 54-113 4-59 (80)
427 PF13743 Thioredoxin_5: Thiore 57.9 7.5 0.00016 31.3 2.0 37 95-133 137-174 (176)
428 TIGR02181 GRX_bact Glutaredoxi 56.4 8.6 0.00019 26.0 1.9 52 54-113 2-55 (79)
429 TIGR02742 TrbC_Ftype type-F co 56.4 40 0.00087 25.7 5.6 53 217-269 56-116 (130)
430 PF00837 T4_deiodinase: Iodoth 55.6 80 0.0017 26.8 7.7 56 32-87 82-141 (237)
431 cd03060 GST_N_Omega_like GST_N 55.5 40 0.00086 22.1 5.1 50 183-238 2-54 (71)
432 PRK10638 glutaredoxin 3; Provi 54.8 29 0.00062 23.7 4.4 53 53-113 4-58 (83)
433 PRK13344 spxA transcriptional 53.8 18 0.0004 27.6 3.5 36 182-225 2-37 (132)
434 cd03059 GST_N_SspA GST_N famil 52.7 62 0.0013 21.0 5.9 67 183-266 2-71 (73)
435 COG0278 Glutaredoxin-related p 52.4 24 0.00051 25.5 3.5 52 187-245 27-82 (105)
436 cd03013 PRX5_like Peroxiredoxi 50.6 28 0.0006 27.3 4.2 53 51-103 31-88 (155)
437 cd00570 GST_N_family Glutathio 50.1 40 0.00087 21.1 4.4 50 183-238 2-55 (71)
438 KOG2507 Ubiquitin regulatory p 49.9 88 0.0019 28.9 7.4 91 48-141 17-111 (506)
439 COG3019 Predicted metal-bindin 48.5 1.3E+02 0.0027 23.3 8.5 73 180-268 26-104 (149)
440 KOG2507 Ubiquitin regulatory p 45.8 1.1E+02 0.0025 28.2 7.5 85 177-266 17-109 (506)
441 TIGR00365 monothiol glutaredox 45.5 16 0.00034 26.2 1.9 47 59-113 25-73 (97)
442 PF00255 GSHPx: Glutathione pe 45.2 85 0.0018 23.0 5.7 47 177-225 20-66 (108)
443 PF09673 TrbC_Ftype: Type-F co 44.6 1.3E+02 0.0027 22.2 6.7 53 54-116 26-80 (113)
444 cd03028 GRX_PICOT_like Glutare 44.6 21 0.00047 25.0 2.4 48 59-115 21-70 (90)
445 TIGR02742 TrbC_Ftype type-F co 43.7 37 0.0008 25.9 3.7 44 94-139 60-113 (130)
446 PF07689 KaiB: KaiB domain; I 41.9 15 0.00032 25.6 1.2 46 61-111 9-55 (82)
447 COG1651 DsbG Protein-disulfide 40.5 93 0.002 26.2 6.2 58 163-221 68-126 (244)
448 cd03033 ArsC_15kD Arsenate Red 40.0 28 0.0006 25.8 2.5 35 182-224 2-36 (113)
449 COG1999 Uncharacterized protei 38.0 1.1E+02 0.0023 25.4 6.0 57 165-222 55-116 (207)
450 COG1331 Highly conserved prote 38.0 61 0.0013 31.9 5.0 77 165-244 31-121 (667)
451 PF09673 TrbC_Ftype: Type-F co 37.3 76 0.0017 23.4 4.5 45 195-241 36-80 (113)
452 COG3019 Predicted metal-bindin 36.7 2E+02 0.0042 22.3 6.5 76 51-140 26-103 (149)
453 COG2761 FrnE Predicted dithiol 35.7 62 0.0014 27.2 4.1 40 226-272 178-217 (225)
454 cd03034 ArsC_ArsC Arsenate Red 34.9 41 0.00088 24.7 2.7 35 183-225 2-36 (112)
455 cd03025 DsbA_FrnE_like DsbA fa 34.9 58 0.0013 26.1 3.9 27 182-208 3-29 (193)
456 COG1393 ArsC Arsenate reductas 34.5 40 0.00086 25.2 2.6 23 181-203 2-24 (117)
457 KOG1651 Glutathione peroxidase 34.3 1E+02 0.0022 24.6 4.8 92 177-270 33-127 (171)
458 PF06764 DUF1223: Protein of u 33.7 2.8E+02 0.006 23.0 9.0 76 182-269 2-99 (202)
459 TIGR00014 arsC arsenate reduct 33.6 44 0.00096 24.7 2.7 35 183-225 2-36 (114)
460 PF09822 ABC_transp_aux: ABC-t 33.5 2.3E+02 0.005 24.3 7.7 72 35-106 10-89 (271)
461 PF04592 SelP_N: Selenoprotein 33.3 69 0.0015 27.1 4.0 49 176-224 24-74 (238)
462 PRK12759 bifunctional gluaredo 33.3 71 0.0015 29.6 4.6 53 53-113 4-66 (410)
463 COG1999 Uncharacterized protei 33.0 1.9E+02 0.004 24.0 6.6 56 48-103 66-127 (207)
464 cd03051 GST_N_GTT2_like GST_N 32.9 37 0.00081 22.0 2.1 21 183-203 2-22 (74)
465 PF08806 Sep15_SelM: Sep15/Sel 32.7 56 0.0012 22.4 2.9 35 232-268 41-76 (78)
466 PF01323 DSBA: DSBA-like thior 32.3 51 0.0011 26.4 3.2 40 181-221 1-40 (193)
467 COG3531 Predicted protein-disu 29.7 81 0.0018 25.9 3.7 45 94-141 163-209 (212)
468 PRK10954 periplasmic protein d 29.5 70 0.0015 26.4 3.6 39 50-88 38-80 (207)
469 PF06953 ArsD: Arsenical resis 29.1 1.4E+02 0.003 22.6 4.7 61 200-268 29-102 (123)
470 PF01323 DSBA: DSBA-like thior 28.2 73 0.0016 25.4 3.5 36 95-137 157-192 (193)
471 cd02990 UAS_FAF1 UAS family, F 28.2 2.8E+02 0.006 21.3 9.7 88 177-267 20-132 (136)
472 PHA02151 hypothetical protein 27.4 40 0.00086 26.4 1.6 16 176-191 201-216 (217)
473 KOG2792 Putative cytochrome C 26.3 3.7E+02 0.0079 23.3 7.1 45 178-222 139-188 (280)
474 PF02630 SCO1-SenC: SCO1/SenC; 26.0 2.3E+02 0.0051 22.5 5.9 54 48-101 51-109 (174)
475 cd02978 KaiB_like KaiB-like fa 26.0 2.1E+02 0.0046 19.3 4.9 57 181-238 3-61 (72)
476 cd03070 PDI_b_ERp44 PDIb famil 25.8 2.5E+02 0.0054 19.9 8.2 73 176-258 14-88 (91)
477 COG1651 DsbG Protein-disulfide 25.2 88 0.0019 26.3 3.5 39 94-140 204-242 (244)
478 PRK00366 ispG 4-hydroxy-3-meth 23.3 2.8E+02 0.0061 25.1 6.3 75 190-267 274-356 (360)
479 COG4604 CeuD ABC-type enteroch 22.9 1.8E+02 0.004 24.3 4.6 28 61-88 169-196 (252)
480 PRK10853 putative reductase; P 22.4 75 0.0016 23.7 2.2 35 182-224 2-36 (118)
481 TIGR01616 nitro_assoc nitrogen 22.1 92 0.002 23.5 2.7 23 181-203 2-24 (126)
482 COG3411 Ferredoxin [Energy pro 22.0 1.4E+02 0.0031 19.6 3.1 31 232-269 16-46 (64)
483 cd03045 GST_N_Delta_Epsilon GS 21.8 73 0.0016 20.7 2.0 21 183-203 2-22 (74)
484 COG0821 gcpE 1-hydroxy-2-methy 21.1 2.9E+02 0.0063 24.9 5.8 83 181-268 257-351 (361)
485 PRK10026 arsenate reductase; P 21.0 90 0.002 24.2 2.5 22 182-203 4-25 (141)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-40 Score=294.42 Aligned_cols=264 Identities=48% Similarity=0.786 Sum_probs=239.6
Q ss_pred CCcccCCcccccCCCCCCHHHHHHHHHhcCCCceEEeCCCcccccccCCCccEEEEEeeC--CchhhhhHHHHHHHHhcc
Q 021368 1 MVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS--NDSEKLLPVFEEAAKSFK 78 (313)
Q Consensus 1 ~~~~~~~~~~~y~~g~~~~~~l~~fi~~~~~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~--~~c~~~~~~~~~~a~~~~ 78 (313)
|..+.|+..+.| .|.++...|..||+.+++|++..+|.++...++......-++||... ...+.+.+.+.++|.+|+
T Consensus 207 l~kk~d~~~~~~-~~~~~~~~l~~Fi~~~~~plv~~ft~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~vAk~f~ 285 (493)
T KOG0190|consen 207 LFKKFDELLVKY-DGSFTPELLKKFIQENSLPLVTEFTVANNAKIYSSFVKLGLDFFVFFKCNRFEELRKKFEEVAKKFK 285 (493)
T ss_pred eccccccchhhc-ccccCHHHHHHHHHHhcccccceecccccceeeccccccceeEEeccccccHHHHHHHHHHHHHhcc
Confidence 356789999999 99999999999999999999999999999999888666667777765 478999999999999999
Q ss_pred CeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 021368 79 GKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE-LTLDKIKTFGEDFLEGKLKPFFKSDPIPET 157 (313)
Q Consensus 79 ~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~-~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~ 157 (313)
+++.|+.+|..+ +++.+..||+....+|..+++..+...+|.+... .+.++|..|+.+++.|+++++++|+++|+.
T Consensus 286 ~~l~Fi~~d~e~---~~~~~~~~Gl~~~~~~~~~v~~~~~~~Ky~~~~e~~~~~~ie~f~~~~l~Gk~~p~~kSqpiPe~ 362 (493)
T KOG0190|consen 286 GKLRFILIDPES---FARVLEFFGLEEEQLPIRAVILNEDGSKYPLEEEELDQENIESFVKDFLDGKVKPHLKSQPIPED 362 (493)
T ss_pred cceEEEEEChHH---hhHHHHhcCcccccCCeeEEeeccccccccCccccccHHHHHHHHHHHhcCccccccccCCCCcc
Confidence 999999997766 5579999999966567555666666677877665 888899999999999999999999999999
Q ss_pred CC-CCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceE
Q 021368 158 ND-GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTI 236 (313)
Q Consensus 158 ~~-~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i 236 (313)
++ .+|+.+.+++|++++.+.+|++||.||||||+||+++.|+|++||..+++.+++.++++|.+.|+.....+.++|||
T Consensus 363 ~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~~~~~~~~fPTI 442 (493)
T KOG0190|consen 363 NDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDVPSLKVDGFPTI 442 (493)
T ss_pred cccCCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccCccccccccceE
Confidence 97 88999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred EEEeCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368 237 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 269 (313)
Q Consensus 237 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~ 269 (313)
++|+.|.+. +|+.|+|.++.+.|..||.++..
T Consensus 443 ~~~pag~k~-~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 443 LFFPAGHKS-NPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred EEecCCCCC-CCcccCCCcchHHHHhhhccCCC
Confidence 999999887 79999999999999999999975
No 2
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=100.00 E-value=3.1e-33 Score=261.63 Aligned_cols=267 Identities=43% Similarity=0.738 Sum_probs=230.9
Q ss_pred CcccCCcc--cccCCCCC--CHHHHHHHHHhcCCCceEEeCCCcccccccCCCccEEEEEeeC---CchhhhhHHHHHHH
Q 021368 2 VKKETEKI--SYFADGKF--DKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS---NDSEKLLPVFEEAA 74 (313)
Q Consensus 2 ~~~~~~~~--~~y~~g~~--~~~~l~~fi~~~~~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~---~~c~~~~~~~~~~a 74 (313)
++..++.. +.| .|+. +..+|..||..+..|.+.+++..++..++..+ +.+++|+... ..|+.+...|+++|
T Consensus 184 ~~~~~~~~~~~~~-~~~~~~~~~~l~~fi~~~~~p~v~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~a 261 (462)
T TIGR01130 184 FKPKDEDEKFSKV-DGEMDTDVSDLEKFIRAESLPLVGEFTQETAAKYFESG-PLVVLYYNVDESLDPFEELRNRFLEAA 261 (462)
T ss_pred ecccccccccccc-cCcccCCHHHHHHHHHHcCCCceEeeCCcchhhHhCCC-CceeEEEEecCCchHHHHHHHHHHHHH
Confidence 34344443 477 7775 56899999999999999999999999888776 5555554433 45899999999999
Q ss_pred HhccC-eEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCC-CCCHHHHHHHHHHHhcCCCCCCCCCC
Q 021368 75 KSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDG-ELTLDKIKTFGEDFLEGKLKPFFKSD 152 (313)
Q Consensus 75 ~~~~~-~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g-~~~~~~i~~fi~~~~~~~~~~~~~s~ 152 (313)
.++.+ .+.|+.+||.. ++.+|+.+|+.....|+++++.......|.+.+ ..+.+.|.+|++++++|++++.++|+
T Consensus 262 ~~~~~~~i~f~~~d~~~---~~~~~~~~~~~~~~~P~~vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~g~~~~~~~se 338 (462)
T TIGR01130 262 KKFRGKFVNFAVADEED---FGRELEYFGLKAEKFPAVAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLKPYLKSE 338 (462)
T ss_pred HHCCCCeEEEEEecHHH---hHHHHHHcCCCccCCceEEEEeCCcccccCCCcCCCCHHHHHHHHHHHhcCCCCeeeccC
Confidence 99997 89999999988 568999999996556999998766434667765 79999999999999999999999999
Q ss_pred CCCCCCCCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCC-CcEEEEEEeCCCcccccCCCC
Q 021368 153 PIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEHHRAKSD 231 (313)
Q Consensus 153 ~~~~~~~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~~~~~~v~ 231 (313)
++|+...+.|..+++++|.+.+.+.+++++|+||++||++|+.+.|.+.+++..+++. ..+.++.+|++.++...+++.
T Consensus 339 ~~p~~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~~~~~i~ 418 (462)
T TIGR01130 339 PIPEDDEGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVPPFEVE 418 (462)
T ss_pred CCCccCCCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCccCCCCcc
Confidence 9998878889999999999999888999999999999999999999999999999873 379999999999887559999
Q ss_pred cCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCCCCccc
Q 021368 232 GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKI 274 (313)
Q Consensus 232 ~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~~~ 274 (313)
++|++++|++|... .+..|.|..+.+.|.+||.+++..++..
T Consensus 419 ~~Pt~~~~~~~~~~-~~~~~~g~~~~~~l~~~l~~~~~~~~~~ 460 (462)
T TIGR01130 419 GFPTIKFVPAGKKS-EPVPYDGDRTLEDFSKFIAKHATFPLEG 460 (462)
T ss_pred ccCEEEEEeCCCCc-CceEecCcCCHHHHHHHHHhcCCCCCcC
Confidence 99999999999876 5779999999999999999998777654
No 3
>PTZ00102 disulphide isomerase; Provisional
Probab=100.00 E-value=5.5e-33 Score=260.98 Aligned_cols=257 Identities=36% Similarity=0.606 Sum_probs=219.8
Q ss_pred CcccCCcccccCCCCCCHHHHHHHHHhcCCCceEEeCCCcccccccCCCccEEEEEeeCCchhhhhHHHHHHHHhccCeE
Q 021368 2 VKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKL 81 (313)
Q Consensus 2 ~~~~~~~~~~y~~g~~~~~~l~~fi~~~~~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~~~c~~~~~~~~~~a~~~~~~v 81 (313)
+|+.++....| . ..+.++|..||..+..|.+.+++.+++..++..+.. +++|+.....++.+.+.|+++|+++++++
T Consensus 204 ~~~~~~~~~~~-~-~~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 280 (477)
T PTZ00102 204 LHKDEEGVELF-M-GKTKEELEEFVSTESFPLFAEINAENYRRYISSGKD-LVWFCGTTEDYDKYKSVVRKVARKLREKY 280 (477)
T ss_pred EecCCCCcccC-C-CCCHHHHHHHHHHcCCCceeecCccchHHHhcCCcc-EEEEecCHHHHHHHHHHHHHHHHhccCce
Confidence 45444444444 4 468899999999999999999999999998877653 33333222556789999999999999999
Q ss_pred EEEEEeCCCcccccc-hhhhhCCCCCCCcEEEEEcCCCCceeccCCC----CCHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021368 82 IFVYVQMDNEDVGKP-VSEYFGITGEAPKVLAYTGNDDAKKHILDGE----LTLDKIKTFGEDFLEGKLKPFFKSDPIPE 156 (313)
Q Consensus 82 ~f~~vd~~~~~~~~~-l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~----~~~~~i~~fi~~~~~~~~~~~~~s~~~~~ 156 (313)
.|+.+|++.. +. +++.+|+..+ |++++...+. +|.+.+. ++.++|.+|+.++++|++.+.++|+++|+
T Consensus 281 ~f~~vd~~~~---~~~~~~~~gi~~~--P~~~i~~~~~--~y~~~~~~~~~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~ 353 (477)
T PTZ00102 281 AFVWLDTEQF---GSHAKEHLLIEEF--PGLAYQSPAG--RYLLPPAKESFDSVEALIEFFKDVEAGKVEKSIKSEPIPE 353 (477)
T ss_pred EEEEEechhc---chhHHHhcCcccC--ceEEEEcCCc--ccCCCccccccCCHHHHHHHHHHHhCCCCCcccccCCCCC
Confidence 9999999984 34 8899999988 9988876433 4545443 78999999999999999999999999998
Q ss_pred CCCCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCc
Q 021368 157 TNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFP 234 (313)
Q Consensus 157 ~~~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P 234 (313)
...+.|..+++++|++.+.+.+++++|+||++||++|+.+.|.|.+++..+++...+.++.+|++.++. ..+++.++|
T Consensus 354 ~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~P 433 (477)
T PTZ00102 354 EQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFP 433 (477)
T ss_pred CCCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccC
Confidence 888899999999999998888999999999999999999999999999999876679999999998876 689999999
Q ss_pred eEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCCC
Q 021368 235 TILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI 270 (313)
Q Consensus 235 ~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~ 270 (313)
++++|++|.. .+..|.|..+.+.|.+||.+++..
T Consensus 434 t~~~~~~~~~--~~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 434 TILFVKAGER--TPIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred eEEEEECCCc--ceeEecCcCCHHHHHHHHHHcCCC
Confidence 9999998876 356899999999999999999864
No 4
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.5e-26 Score=210.64 Aligned_cols=215 Identities=28% Similarity=0.453 Sum_probs=186.9
Q ss_pred CCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCC
Q 021368 39 RENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGND 117 (313)
Q Consensus 39 ~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~ 117 (313)
...+.........++|.||++| ++|+++.|.|.+++..+++.+.++.|||+. +..+|+.|+|.++ |++.+|.++
T Consensus 37 ~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~---~~~~~~~y~i~gf--Ptl~~f~~~ 111 (383)
T KOG0191|consen 37 DSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDE---HKDLCEKYGIQGF--PTLKVFRPG 111 (383)
T ss_pred cccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchh---hHHHHHhcCCccC--cEEEEEcCC
Confidence 3334445677778999999999 999999999999999999999999999999 7899999999999 999999988
Q ss_pred CCceeccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC-CeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhh
Q 021368 118 DAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDG-DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAF 196 (313)
Q Consensus 118 ~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~-~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~ 196 (313)
...+.|.|..+.+.+..|+...+....... .. .|..++..+|...+.+.+.+++|.||+|||++|+.+
T Consensus 112 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l 180 (383)
T KOG0191|consen 112 -KKPIDYSGPRNAESLAEFLIKELEPSVKKL----------VEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKL 180 (383)
T ss_pred -CceeeccCcccHHHHHHHHHHhhccccccc----------cCCceEEccccchhhhhhccCcceEEEEeccccHHhhhc
Confidence 567889999999999999998876333221 22 488999999999998899999999999999999999
Q ss_pred hHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCCCC
Q 021368 197 EPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIP 271 (313)
Q Consensus 197 ~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~ 271 (313)
.+.|.+++..+.....+.++.+||+.... ..+++.++|++.+|+.|.. .+..|.|.++.+.|.+|+++.....
T Consensus 181 ~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~--~~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 181 APEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEE--DIYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred ChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCc--ccccccccccHHHHHHHHHhhcCCC
Confidence 99999999999765589999999984443 7889999999999999887 2337888999999999999997654
No 5
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.89 E-value=9.7e-22 Score=165.01 Aligned_cols=186 Identities=11% Similarity=0.057 Sum_probs=142.2
Q ss_pred ccEEEEEe---eC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccC
Q 021368 51 KNQLLLFA---VS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILD 125 (313)
Q Consensus 51 ~~~v~f~~---~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~ 125 (313)
..+++|++ +| ++|+.+.|.+++++..+.+ .+.++.+|.++ ++.++++|+|.++ |++++|++|.....++.
T Consensus 21 ~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~---~~~l~~~~~V~~~--Pt~~~f~~g~~~~~~~~ 95 (215)
T TIGR02187 21 VEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPE---DKEEAEKYGVERV--PTTIILEEGKDGGIRYT 95 (215)
T ss_pred eEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcc---cHHHHHHcCCCcc--CEEEEEeCCeeeEEEEe
Confidence 34666888 89 9999999999999999965 24455555445 6799999999999 99999988764445788
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEcCcChHHHhhcCCCc-EEEEEeCCCCccchhhhHHHHHHH
Q 021368 126 GELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD-VLLEIYAPWCGHCQAFEPTYNKLA 204 (313)
Q Consensus 126 g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~l~~~~k~-~lv~fy~~~C~~C~~~~~~~~~la 204 (313)
|..+.+.+..|+..++.-... ...++.++.+. +...+++ .++.||++||++|+.+.+.+..++
T Consensus 96 G~~~~~~l~~~i~~~~~~~~~---------------~~~L~~~~~~~-l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~ 159 (215)
T TIGR02187 96 GIPAGYEFAALIEDIVRVSQG---------------EPGLSEKTVEL-LQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFA 159 (215)
T ss_pred ecCCHHHHHHHHHHHHHhcCC---------------CCCCCHHHHHH-HHhcCCCcEEEEEECCCCCCcHHHHHHHHHHH
Confidence 999999999999988641100 11233333333 3334455 555699999999999999999998
Q ss_pred HHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHh
Q 021368 205 KHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK 266 (313)
Q Consensus 205 ~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~ 266 (313)
... +.+.+..+|.+.+.. .++++.++|+++++.+|. .+.|....+.|.+||..
T Consensus 160 ~~~---~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~------~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 160 LAN---DKILGEMIEANENPDLAEKYGVMSVPKIVINKGVE------EFVGAYPEEQFLEYILS 214 (215)
T ss_pred Hhc---CceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE------EEECCCCHHHHHHHHHh
Confidence 773 258888999988776 789999999999986543 38888889999999864
No 6
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.81 E-value=1.8e-19 Score=134.60 Aligned_cols=101 Identities=18% Similarity=0.253 Sum_probs=89.7
Q ss_pred CCCeEEEcCcChHHHh--hcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc---ccCCCCcC
Q 021368 159 DGDVKIVVGNNFDEIV--LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---HRAKSDGF 233 (313)
Q Consensus 159 ~~~v~~l~~~~f~~~l--~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~---~~~~v~~~ 233 (313)
...|..++..+|++.+ .+.++.++|.||++||++|+.+.|.|.++|..+++ .+.|+++||+.+.. .+++|.++
T Consensus 8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~--~v~~~~Vd~d~~~~l~~~~~~I~~~ 85 (113)
T cd03006 8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD--QVLFVAINCWWPQGKCRKQKHFFYF 85 (113)
T ss_pred CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEECCCChHHHHHhcCCccc
Confidence 3678999999999973 47789999999999999999999999999999976 59999999998864 47999999
Q ss_pred ceEEEEeCCCCCcCceeeccCcCHHHHHHHH
Q 021368 234 PTILFFPAGNKSFDPINVDVDRTVVALYKFL 264 (313)
Q Consensus 234 P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi 264 (313)
||+++|++|.. +..|.|..+.+.|..|+
T Consensus 86 PTl~lf~~g~~---~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 86 PVIHLYYRSRG---PIEYKGPMRAPYMEKFV 113 (113)
T ss_pred CEEEEEECCcc---ceEEeCCCCHHHHHhhC
Confidence 99999998875 35899999999999874
No 7
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.80 E-value=5.6e-19 Score=130.42 Aligned_cols=97 Identities=25% Similarity=0.547 Sum_probs=87.3
Q ss_pred CeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEE
Q 021368 161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF 238 (313)
Q Consensus 161 ~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~ 238 (313)
.|..++.++|++.+ ..+++++|+||++||++|+.+.|.|.++++.+++ .+.|+.+||+.+.. .++++.++|++++
T Consensus 2 ~~~~l~~~~f~~~v-~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 78 (101)
T cd03003 2 EIVTLDRGDFDAAV-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG--VIRIGAVNCGDDRMLCRSQGVNSYPSLYV 78 (101)
T ss_pred CeEEcCHhhHHHHh-cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC--ceEEEEEeCCccHHHHHHcCCCccCEEEE
Confidence 46789999999988 4568999999999999999999999999999986 59999999998766 7899999999999
Q ss_pred EeCCCCCcCceeeccCcCHHHHHHH
Q 021368 239 FPAGNKSFDPINVDVDRTVVALYKF 263 (313)
Q Consensus 239 ~~~g~~~~~~~~y~g~~~~~~l~~f 263 (313)
|++|.... .|.|..+.+.|.+|
T Consensus 79 ~~~g~~~~---~~~G~~~~~~l~~f 100 (101)
T cd03003 79 FPSGMNPE---KYYGDRSKESLVKF 100 (101)
T ss_pred EcCCCCcc---cCCCCCCHHHHHhh
Confidence 99987653 89999999999887
No 8
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.79 E-value=5.8e-19 Score=130.65 Aligned_cols=101 Identities=32% Similarity=0.651 Sum_probs=93.8
Q ss_pred eEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEE
Q 021368 162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF 239 (313)
Q Consensus 162 v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~ 239 (313)
|..++.++|++.+.+.+++++|+||++||++|+.+.+.|.+++..+.+ .+.++.+|++.+.. .++++.++|++++|
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 78 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD--NVKFAKVDCDENKELCKKYGVKSVPTIIFF 78 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTSHHHHHHTTCSSSSEEEEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc--ccccchhhhhccchhhhccCCCCCCEEEEE
Confidence 567999999999977689999999999999999999999999999987 79999999998865 89999999999999
Q ss_pred eCCCCCcCceeeccCcCHHHHHHHHHhc
Q 021368 240 PAGNKSFDPINVDVDRTVVALYKFLKKN 267 (313)
Q Consensus 240 ~~g~~~~~~~~y~g~~~~~~l~~fi~~~ 267 (313)
++|.... +|.|..+.+.|.+||++|
T Consensus 79 ~~g~~~~---~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 79 KNGKEVK---RYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp ETTEEEE---EEESSSSHHHHHHHHHHH
T ss_pred ECCcEEE---EEECCCCHHHHHHHHHcC
Confidence 9999874 999999999999999875
No 9
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.79 E-value=4.6e-19 Score=131.62 Aligned_cols=100 Identities=28% Similarity=0.589 Sum_probs=88.7
Q ss_pred CeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEE
Q 021368 161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF 238 (313)
Q Consensus 161 ~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~ 238 (313)
.|..++.++|++.+.+.+++++|.||++||++|+.+.|.|.+++..+.+ .+.++.+||+.+.. .+++|.++|++++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 79 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKG--KVKVGSVDCQKYESLCQQANIRAYPTIRL 79 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence 4678999999999888888999999999999999999999999999865 69999999999876 7899999999999
Q ss_pred EeCCCCCcCceeeccCcC-HHHHHHHH
Q 021368 239 FPAGNKSFDPINVDVDRT-VVALYKFL 264 (313)
Q Consensus 239 ~~~g~~~~~~~~y~g~~~-~~~l~~fi 264 (313)
|++|.. ....|.|..+ .+.|.+||
T Consensus 80 ~~~g~~--~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 80 YPGNAS--KYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EcCCCC--CceEccCCCCCHHHHHhhC
Confidence 998833 3458999876 99999885
No 10
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=4e-19 Score=135.23 Aligned_cols=104 Identities=23% Similarity=0.416 Sum_probs=96.1
Q ss_pred CeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEE
Q 021368 161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF 238 (313)
Q Consensus 161 ~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~ 238 (313)
.+..++..+|++.+.+.+.||+|.|||+||++|+.+.|.+++++..+.+ .+.++++|.+.+.. .+|+|..+|++++
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g--~~k~~kvdtD~~~ela~~Y~I~avPtvlv 121 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAG--KFKLYKVDTDEHPELAEDYEISAVPTVLV 121 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcC--eEEEEEEccccccchHhhcceeeeeEEEE
Confidence 4556888999999999999999999999999999999999999999977 79999999999877 7999999999999
Q ss_pred EeCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368 239 FPAGNKSFDPINVDVDRTVVALYKFLKKNAS 269 (313)
Q Consensus 239 ~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~ 269 (313)
|++|...+ .+.|..+.+.|.+||++.+.
T Consensus 122 fknGe~~d---~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 122 FKNGEKVD---RFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EECCEEee---eecccCCHHHHHHHHHHHhc
Confidence 99999876 89999999999999998764
No 11
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.79 E-value=1e-18 Score=129.69 Aligned_cols=103 Identities=61% Similarity=1.093 Sum_probs=92.1
Q ss_pred CeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-ccCCCCcCceEEEE
Q 021368 161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTILFF 239 (313)
Q Consensus 161 ~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-~~~~v~~~P~i~~~ 239 (313)
+|..|++++|++.+.+.+++++|+||++||++|+.+.+.|.+++..+++..++.++.+|++.++. ..+++.++|++++|
T Consensus 1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~Pt~~~~ 80 (104)
T cd02995 1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDGFPTILFF 80 (104)
T ss_pred CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCCCCEEEEE
Confidence 37889999999999877899999999999999999999999999999875579999999998865 57788999999999
Q ss_pred eCCCCCcCceeeccCcCHHHHHHHH
Q 021368 240 PAGNKSFDPINVDVDRTVVALYKFL 264 (313)
Q Consensus 240 ~~g~~~~~~~~y~g~~~~~~l~~fi 264 (313)
++|... .+..|.|..+...|.+||
T Consensus 81 ~~~~~~-~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 81 PAGDKS-NPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred cCCCcC-CceEccCCcCHHHHHhhC
Confidence 988843 456899999999999986
No 12
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.77 E-value=1.9e-18 Score=129.21 Aligned_cols=101 Identities=25% Similarity=0.500 Sum_probs=88.3
Q ss_pred CeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCC----CcEEEEEEeCCCccc--ccCCCCcCc
Q 021368 161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV----DSIVIAKMDGTTNEH--HRAKSDGFP 234 (313)
Q Consensus 161 ~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~----~~v~~~~vd~~~~~~--~~~~v~~~P 234 (313)
.|..+++++|++.+ +.+++++|.||++||++|+.+.|.|.+++..+++. ..+.++.+||+.+.. .++++.++|
T Consensus 2 ~v~~l~~~~f~~~i-~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P 80 (108)
T cd02996 2 EIVSLTSGNIDDIL-QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP 80 (108)
T ss_pred ceEEcCHhhHHHHH-hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence 47789999999977 66789999999999999999999999999987542 258999999998866 789999999
Q ss_pred eEEEEeCCCCCcCceeeccCcCHHHHHHHH
Q 021368 235 TILFFPAGNKSFDPINVDVDRTVVALYKFL 264 (313)
Q Consensus 235 ~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi 264 (313)
++++|++|... ...|.|..+.+.|.+||
T Consensus 81 tl~~~~~g~~~--~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 81 TLKLFRNGMMM--KREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEEeCCcCc--ceecCCCCCHHHHHhhC
Confidence 99999999852 35899999999999986
No 13
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.8e-17 Score=150.36 Aligned_cols=214 Identities=15% Similarity=0.162 Sum_probs=160.0
Q ss_pred CCCceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccC---eEEEEEEeCCCcccccchhhhhCCCC
Q 021368 30 KLPLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITG 105 (313)
Q Consensus 30 ~~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~---~v~f~~vd~~~~~~~~~l~~~~~v~~ 105 (313)
....|..|+.++|+.++......+|.||+|| +||++++|.+.++|..++. .+..+.|||+. +..+|++|+|++
T Consensus 23 ~~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~---~~~~~~~y~v~g 99 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATE---ESDLASKYEVRG 99 (493)
T ss_pred cccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecch---hhhhHhhhcCCC
Confidence 3568999999999999999888899999999 9999999999999999997 59999999999 569999999999
Q ss_pred CCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEc-CcChHHHhhcCCCcEEEE
Q 021368 106 EAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVV-GNNFDEIVLDESKDVLLE 184 (313)
Q Consensus 106 ~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~-~~~f~~~l~~~~k~~lv~ 184 (313)
| ||+.+|++|.. +..|.|.++.+.|..|+.+..+ +.+..|. .+.....+ .....++|-
T Consensus 100 y--PTlkiFrnG~~-~~~Y~G~r~adgIv~wl~kq~g-----------------Pa~~~l~~~~~a~~~l-~~~~~~vig 158 (493)
T KOG0190|consen 100 Y--PTLKIFRNGRS-AQDYNGPREADGIVKWLKKQSG-----------------PASKTLKTVDEAEEFL-SKKDVVVIG 158 (493)
T ss_pred C--CeEEEEecCCc-ceeccCcccHHHHHHHHHhccC-----------------CCceecccHHHHHhhc-cCCceEEEE
Confidence 9 99999999875 6789999999999999999765 2334454 45555555 445556666
Q ss_pred EeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCC--CcCceEEEEeCCCCCcCceeeccCcCHHHHHH
Q 021368 185 IYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKS--DGFPTILFFPAGNKSFDPINVDVDRTVVALYK 262 (313)
Q Consensus 185 fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v--~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~ 262 (313)
|+...-+. ...+...+..+.+ .+.|+ +-.+....+.+.. .+.|.+++++.... ....|.|..+.+.|.+
T Consensus 159 ~F~d~~~~----~~~~~~~a~~l~~--d~~F~-~ts~~~~~~~~~~~~~~~~~i~l~kk~d~--~~~~~~~~~~~~~l~~ 229 (493)
T KOG0190|consen 159 FFKDLESL----AESFFDAASKLRD--DYKFA-HTSDSDVAKKLELNTEGTFPIVLFKKFDE--LLVKYDGSFTPELLKK 229 (493)
T ss_pred Eecccccc----hHHHHHHHHhccc--cceee-ccCcHhHHhhccCCCCCcceEEecccccc--chhhcccccCHHHHHH
Confidence 66543322 1455666666665 57787 2222222244433 34666778766554 3346778899999999
Q ss_pred HHHhcCCCCccccC
Q 021368 263 FLKKNASIPFKIQK 276 (313)
Q Consensus 263 fi~~~~~~~~~~~~ 276 (313)
||..+.-+.+.-..
T Consensus 230 Fi~~~~~plv~~ft 243 (493)
T KOG0190|consen 230 FIQENSLPLVTEFT 243 (493)
T ss_pred HHHHhcccccceec
Confidence 99998755544433
No 14
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.76 E-value=5.2e-18 Score=127.55 Aligned_cols=106 Identities=15% Similarity=0.093 Sum_probs=93.5
Q ss_pred CCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCcc--ch--hhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCc
Q 021368 159 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGH--CQ--AFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDG 232 (313)
Q Consensus 159 ~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~--C~--~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~ 232 (313)
...|..++.++|++.+.+.+.+++++||++||++ |+ .+.|.+.++|..+-...++.|+++|++.+.. ++|+|.+
T Consensus 8 ~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~ 87 (120)
T cd03065 8 KDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDE 87 (120)
T ss_pred CcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcc
Confidence 4568889999999999988999999999999987 99 8889999999887222269999999999876 8999999
Q ss_pred CceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368 233 FPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 268 (313)
Q Consensus 233 ~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~ 268 (313)
+||+++|++|..+ .|.|..+.+.|.+||.+..
T Consensus 88 iPTl~lfk~G~~v----~~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 88 EDSIYVFKDDEVI----EYDGEFAADTLVEFLLDLI 119 (120)
T ss_pred ccEEEEEECCEEE----EeeCCCCHHHHHHHHHHHh
Confidence 9999999999864 6999999999999998763
No 15
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.75 E-value=7.9e-18 Score=126.05 Aligned_cols=101 Identities=34% Similarity=0.655 Sum_probs=88.6
Q ss_pred eEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC--ccc--ccCCCCcCceEE
Q 021368 162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT--NEH--HRAKSDGFPTIL 237 (313)
Q Consensus 162 v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~--~~~--~~~~v~~~P~i~ 237 (313)
|..++.++|.+.+.+.+++++|+||++||++|+.+.+.|.++++.+.+ .+.++.+||+. +.. .++++.++|+++
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~--~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~ 79 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG--LVQVAAVDCDEDKNKPLCGKYGVQGFPTLK 79 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC--CceEEEEecCccccHHHHHHcCCCcCCEEE
Confidence 678999999999988889999999999999999999999999999876 68899999998 433 689999999999
Q ss_pred EEeCCCCC--cCceeeccCcCHHHHHHHH
Q 021368 238 FFPAGNKS--FDPINVDVDRTVVALYKFL 264 (313)
Q Consensus 238 ~~~~g~~~--~~~~~y~g~~~~~~l~~fi 264 (313)
+|++|..+ ..+..|.|..+.+.|.+||
T Consensus 80 ~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 80 VFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred EEeCCCcccccccccccCccCHHHHHHHh
Confidence 99988631 1345899999999999998
No 16
>PTZ00102 disulphide isomerase; Provisional
Probab=99.74 E-value=1.3e-16 Score=150.08 Aligned_cols=227 Identities=15% Similarity=0.187 Sum_probs=169.0
Q ss_pred CceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccC---eEEEEEEeCCCcccccchhhhhCCCCCC
Q 021368 32 PLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITGEA 107 (313)
Q Consensus 32 ~~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~---~v~f~~vd~~~~~~~~~l~~~~~v~~~~ 107 (313)
..+..|+.++|+..+..+..++|.||++| ++|+++.|.|.+++..+.+ .+.|+.|||+. +..+|++|+|.++
T Consensus 32 ~~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~---~~~l~~~~~i~~~- 107 (477)
T PTZ00102 32 EHVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATE---EMELAQEFGVRGY- 107 (477)
T ss_pred CCcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCC---CHHHHHhcCCCcc-
Confidence 46789999999999888888999999999 9999999999999988753 59999999998 6699999999999
Q ss_pred CcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCCCCCCCCC--------------------CC--------------
Q 021368 108 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKS--------------------DP-------------- 153 (313)
Q Consensus 108 ~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s--------------------~~-------------- 153 (313)
|++.+|++|.. ..|.|.++.+.|.+|+.+.++..+...... ..
T Consensus 108 -Pt~~~~~~g~~--~~y~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~ 184 (477)
T PTZ00102 108 -PTIKFFNKGNP--VNYSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTSKDSELYKKFEEVADKH 184 (477)
T ss_pred -cEEEEEECCce--EEecCCCCHHHHHHHHHHhhCCCceeecCHHHHHHhhccCcEEEEEEeccCCcHHHHHHHHHHHhc
Confidence 99999988753 378999999999999998875433211100 00
Q ss_pred -------------------------CC---C-------------CCCCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCcc
Q 021368 154 -------------------------IP---E-------------TNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGH 192 (313)
Q Consensus 154 -------------------------~~---~-------------~~~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~ 192 (313)
.. . ..-+.+..++.+++..++ ..+.++++++. -|..
T Consensus 185 ~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~ 261 (477)
T PTZ00102 185 REHAKFFVKKHEGKNKIYVLHKDEEGVELFMGKTKEELEEFVSTESFPLFAEINAENYRRYI-SSGKDLVWFCG--TTED 261 (477)
T ss_pred cccceEEEEcCCCCCcEEEEecCCCCcccCCCCCHHHHHHHHHHcCCCceeecCccchHHHh-cCCccEEEEec--CHHH
Confidence 00 0 001234556666666655 34444433332 3555
Q ss_pred chhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc---ccCCCCcCceEEEEeCCCCCcCceeeccC----cCHHHHHHHHH
Q 021368 193 CQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---HRAKSDGFPTILFFPAGNKSFDPINVDVD----RTVVALYKFLK 265 (313)
Q Consensus 193 C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~---~~~~v~~~P~i~~~~~g~~~~~~~~y~g~----~~~~~l~~fi~ 265 (313)
...+.+.+.++|+++++ ++.|+.+|+..... ..+++..+|++++...+.+. .+.+. .+.+.|.+|++
T Consensus 262 ~~~~~~~~~~~A~~~~~--~~~f~~vd~~~~~~~~~~~~gi~~~P~~~i~~~~~~y----~~~~~~~~~~~~~~l~~Fv~ 335 (477)
T PTZ00102 262 YDKYKSVVRKVARKLRE--KYAFVWLDTEQFGSHAKEHLLIEEFPGLAYQSPAGRY----LLPPAKESFDSVEALIEFFK 335 (477)
T ss_pred HHHHHHHHHHHHHhccC--ceEEEEEechhcchhHHHhcCcccCceEEEEcCCccc----CCCccccccCCHHHHHHHHH
Confidence 66788999999999987 68999999998653 58899999998887533322 33332 67999999999
Q ss_pred hcCCCCccc
Q 021368 266 KNASIPFKI 274 (313)
Q Consensus 266 ~~~~~~~~~ 274 (313)
+....+...
T Consensus 336 ~~~~gk~~~ 344 (477)
T PTZ00102 336 DVEAGKVEK 344 (477)
T ss_pred HHhCCCCCc
Confidence 988765544
No 17
>PRK09381 trxA thioredoxin; Provisional
Probab=99.74 E-value=2.4e-17 Score=123.46 Aligned_cols=104 Identities=25% Similarity=0.506 Sum_probs=93.7
Q ss_pred CCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEE
Q 021368 160 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL 237 (313)
Q Consensus 160 ~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~ 237 (313)
+.|+.+++++|.+.+.+.+++++|+||++||++|+.+.+.|.+++..+.+ .+.++.+|++.+.. .++++.++|+++
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 80 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLL 80 (109)
T ss_pred CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC--CcEEEEEECCCChhHHHhCCCCcCCEEE
Confidence 56888999999998877789999999999999999999999999999976 68999999998876 789999999999
Q ss_pred EEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368 238 FFPAGNKSFDPINVDVDRTVVALYKFLKKNA 268 (313)
Q Consensus 238 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~ 268 (313)
+|++|..+. .+.|..+.+.|..||.+++
T Consensus 81 ~~~~G~~~~---~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 81 LFKNGEVAA---TKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEeCCeEEE---EecCCCCHHHHHHHHHHhc
Confidence 999888754 7889889999999998875
No 18
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.74 E-value=1.9e-17 Score=122.65 Aligned_cols=99 Identities=35% Similarity=0.670 Sum_probs=89.3
Q ss_pred eEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEE
Q 021368 162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF 239 (313)
Q Consensus 162 v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~ 239 (313)
|..+++.+|.+.+.+.+++++|+||++||++|+.+.+.|.+++..+.+ .+.++.+|++.+.. +++++.++|++++|
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~~~~id~~~~~~~~~~~~i~~~P~~~~~ 79 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG--IVKVGAVDADVHQSLAQQYGVRGFPTIKVF 79 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CceEEEEECcchHHHHHHCCCCccCEEEEE
Confidence 577899999999877778899999999999999999999999999876 69999999998876 79999999999999
Q ss_pred eCCCCCcCceeeccCcCHHHHHHHH
Q 021368 240 PAGNKSFDPINVDVDRTVVALYKFL 264 (313)
Q Consensus 240 ~~g~~~~~~~~y~g~~~~~~l~~fi 264 (313)
++|.. .+..|.|..+.+.|.+|+
T Consensus 80 ~~~~~--~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 80 GAGKN--SPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CCCCc--ceeecCCCCCHHHHHHHh
Confidence 98844 466899999999999997
No 19
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.74 E-value=1.8e-17 Score=122.32 Aligned_cols=98 Identities=26% Similarity=0.457 Sum_probs=84.8
Q ss_pred CeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEE
Q 021368 161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF 238 (313)
Q Consensus 161 ~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~ 238 (313)
.|..++.++|++.+. + .++|.||++||++|+.+.|.|.+++..++.. .+.++.+|++.+.. .++++.++|++++
T Consensus 2 ~v~~l~~~~f~~~~~--~-~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02994 2 NVVELTDSNWTLVLE--G-EWMIEFYAPWCPACQQLQPEWEEFADWSDDL-GINVAKVDVTQEPGLSGRFFVTALPTIYH 77 (101)
T ss_pred ceEEcChhhHHHHhC--C-CEEEEEECCCCHHHHHHhHHHHHHHHhhccC-CeEEEEEEccCCHhHHHHcCCcccCEEEE
Confidence 478899999998763 3 3899999999999999999999999987542 59999999998765 6899999999999
Q ss_pred EeCCCCCcCceeeccCcCHHHHHHHHHh
Q 021368 239 FPAGNKSFDPINVDVDRTVVALYKFLKK 266 (313)
Q Consensus 239 ~~~g~~~~~~~~y~g~~~~~~l~~fi~~ 266 (313)
|++|.. ..|.|..+.+.|.+||++
T Consensus 78 ~~~g~~----~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 78 AKDGVF----RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred eCCCCE----EEecCCCCHHHHHHHHhC
Confidence 988863 289999999999999864
No 20
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.73 E-value=5.6e-17 Score=135.46 Aligned_cols=184 Identities=12% Similarity=0.156 Sum_probs=132.7
Q ss_pred cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccC---eEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCcee
Q 021368 47 ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKH 122 (313)
Q Consensus 47 ~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~---~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~ 122 (313)
+...-|+|.||+|| +||+++.|+|.++...+++ -++++++||+. .+.++.+|||++| |||.+++++. .+
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~---f~aiAnefgiqGY--PTIk~~kgd~--a~ 113 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATR---FPAIANEFGIQGY--PTIKFFKGDH--AI 113 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeeccccccc---chhhHhhhccCCC--ceEEEecCCe--ee
Confidence 44557899999999 9999999999999999996 39999999999 5699999999999 9999999875 67
Q ss_pred ccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEcCcCh-HHHhhcCCCcEEEEEeCCCCccchhhhHHHH
Q 021368 123 ILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNF-DEIVLDESKDVLLEIYAPWCGHCQAFEPTYN 201 (313)
Q Consensus 123 ~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~~~~f-~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~ 201 (313)
.|.|.++.+.|..|..+..+. -+..++.+.. ...+....++.+|+|.+.-. .+...+.
T Consensus 114 dYRG~R~Kd~iieFAhR~a~a-----------------iI~pi~enQ~~fehlq~Rhq~ffVf~Gtge~----PL~d~fi 172 (468)
T KOG4277|consen 114 DYRGGREKDAIIEFAHRCAAA-----------------IIEPINENQIEFEHLQARHQPFFVFFGTGEG----PLFDAFI 172 (468)
T ss_pred ecCCCccHHHHHHHHHhcccc-----------------eeeecChhHHHHHHHhhccCceEEEEeCCCC----cHHHHHH
Confidence 899999999999999998652 2233444222 23344567899998886432 2333444
Q ss_pred HHHHHhcCCCcEEEEEEeC-CCccc-ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368 202 KLAKHLRGVDSIVIAKMDG-TTNEH-HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 268 (313)
Q Consensus 202 ~la~~~~~~~~v~~~~vd~-~~~~~-~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~ 268 (313)
..|+. .+.++++-. +.... ..-.....|++.+|++... ......+.+.|..||+..-
T Consensus 173 dAASe-----~~~~a~FfSaseeVaPe~~~~kempaV~VFKDetf-----~i~de~dd~dLseWinRER 231 (468)
T KOG4277|consen 173 DAASE-----KFSVARFFSASEEVAPEENDAKEMPAVAVFKDETF-----EIEDEGDDEDLSEWINRER 231 (468)
T ss_pred HHhhh-----heeeeeeeccccccCCcccchhhccceEEEcccee-----EEEecCchhHHHHHHhHhh
Confidence 44432 233333332 22222 3445678899999988654 2223346688999998764
No 21
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.73 E-value=3.3e-17 Score=122.59 Aligned_cols=101 Identities=32% Similarity=0.676 Sum_probs=86.3
Q ss_pred CeEEEcCcChHHHhh--cCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCc-cc---ccCCCCcCc
Q 021368 161 DVKIVVGNNFDEIVL--DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-EH---HRAKSDGFP 234 (313)
Q Consensus 161 ~v~~l~~~~f~~~l~--~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-~~---~~~~v~~~P 234 (313)
.|..++.++|+.++. +.+++++|.||++||++|+.+.+.|.+++..+++. ++.++.+|++.+ .. +.+++.++|
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~-~~~~~~vd~d~~~~~~~~~~~~v~~~P 80 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGS-NVKVAKFNADGEQREFAKEELQLKSFP 80 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccC-CeEEEEEECCccchhhHHhhcCCCcCC
Confidence 477899999999884 45789999999999999999999999999999853 599999999974 22 358999999
Q ss_pred eEEEEeCCCCCcCceeeccC-cCHHHHHHHH
Q 021368 235 TILFFPAGNKSFDPINVDVD-RTVVALYKFL 264 (313)
Q Consensus 235 ~i~~~~~g~~~~~~~~y~g~-~~~~~l~~fi 264 (313)
++++|++|.. .+..|.|. ++.+.|+.||
T Consensus 81 ti~~f~~~~~--~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 81 TILFFPKNSR--QPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEEcCCCC--CceeccCCCCCHHHHHhhC
Confidence 9999988765 45689995 7999999986
No 22
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.72 E-value=4.1e-17 Score=120.57 Aligned_cols=98 Identities=33% Similarity=0.669 Sum_probs=85.6
Q ss_pred eEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcC-CCcEEEEEEeCCCccc--ccCCCCcCceEEE
Q 021368 162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG-VDSIVIAKMDGTTNEH--HRAKSDGFPTILF 238 (313)
Q Consensus 162 v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~-~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~ 238 (313)
+..+++++|++.+.+ + +++|+||++||++|+.+.|.|.+++..+++ ...+.++.+||+.+.. +++++.++|++++
T Consensus 2 ~~~l~~~~f~~~~~~-~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 2 VLELTEDNFDHHIAE-G-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL 79 (102)
T ss_pred eeECCHHHHHHHhhc-C-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence 567899999998843 3 599999999999999999999999999976 3469999999998765 7899999999999
Q ss_pred EeCCCCCcCceeeccCcCHHHHHHHH
Q 021368 239 FPAGNKSFDPINVDVDRTVVALYKFL 264 (313)
Q Consensus 239 ~~~g~~~~~~~~y~g~~~~~~l~~fi 264 (313)
|++|.... .|.|..+.+.|.+||
T Consensus 80 ~~~g~~~~---~~~G~~~~~~l~~~i 102 (102)
T cd03005 80 FKDGEKVD---KYKGTRDLDSLKEFV 102 (102)
T ss_pred EeCCCeee---EeeCCCCHHHHHhhC
Confidence 99887543 899999999998885
No 23
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.72 E-value=7.1e-17 Score=119.86 Aligned_cols=101 Identities=44% Similarity=0.864 Sum_probs=88.9
Q ss_pred eEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC-ccc--ccCCCCcCceEEE
Q 021368 162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-NEH--HRAKSDGFPTILF 238 (313)
Q Consensus 162 v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~-~~~--~~~~v~~~P~i~~ 238 (313)
|..+++++|++.+.+.+++++|+||++||++|+.+.+.|..++..++....+.++.+|++. +.. .++++.++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 5678999999988777789999999999999999999999999999854579999999999 654 7899999999999
Q ss_pred EeCCCCCcCceeeccCcCHHHHHHHH
Q 021368 239 FPAGNKSFDPINVDVDRTVVALYKFL 264 (313)
Q Consensus 239 ~~~g~~~~~~~~y~g~~~~~~l~~fi 264 (313)
|.+|.. ....|.|..+.+.|.+||
T Consensus 82 ~~~~~~--~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 82 FPKGST--EPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EeCCCC--CccccCCccCHHHHHhhC
Confidence 988754 345899999999999885
No 24
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=4.1e-17 Score=137.43 Aligned_cols=106 Identities=27% Similarity=0.506 Sum_probs=98.0
Q ss_pred CCeEEEcCcChHHHhhcC--CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCce
Q 021368 160 GDVKIVVGNNFDEIVLDE--SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPT 235 (313)
Q Consensus 160 ~~v~~l~~~~f~~~l~~~--~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~ 235 (313)
..|+++|..+|...+... .+||+|+||+|||++|+.+.|.+.+++..+++ .+.+++|||+.... ..|+|.++|+
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G--~f~LakvN~D~~p~vAaqfgiqsIPt 100 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG--KFKLAKVNCDAEPMVAAQFGVQSIPT 100 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC--ceEEEEecCCcchhHHHHhCcCcCCe
Confidence 448999999999988644 46999999999999999999999999999998 79999999999887 7999999999
Q ss_pred EEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCCC
Q 021368 236 ILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI 270 (313)
Q Consensus 236 i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~ 270 (313)
+++|++|..+. .|.|....+.|.+||.++++.
T Consensus 101 V~af~dGqpVd---gF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 101 VYAFKDGQPVD---GFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EEEeeCCcCcc---ccCCCCcHHHHHHHHHHhcCh
Confidence 99999999987 999999999999999999876
No 25
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.71 E-value=3.1e-17 Score=123.03 Aligned_cols=99 Identities=19% Similarity=0.395 Sum_probs=84.7
Q ss_pred EEcCcChHHHhhc--CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEE
Q 021368 164 IVVGNNFDEIVLD--ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF 239 (313)
Q Consensus 164 ~l~~~~f~~~l~~--~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~ 239 (313)
.++.++|.+.+.. .+++++|+||++||++|+.+.|.|.+++..+++. ++.++.+|++.+.. .+++|.++|++++|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~ 86 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL-GVGIATVNAGHERRLARKLGAHSVPAIVGI 86 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc-CceEEEEeccccHHHHHHcCCccCCEEEEE
Confidence 3566778765543 5789999999999999999999999999999753 58999999998665 78999999999999
Q ss_pred eCCCCCcCceeeccCcCHHHHHHHHHh
Q 021368 240 PAGNKSFDPINVDVDRTVVALYKFLKK 266 (313)
Q Consensus 240 ~~g~~~~~~~~y~g~~~~~~l~~fi~~ 266 (313)
++|+.+. .+.|..+.+.|.+||.+
T Consensus 87 ~~g~~~~---~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 87 INGQVTF---YHDSSFTKQHVVDFVRK 110 (111)
T ss_pred ECCEEEE---EecCCCCHHHHHHHHhc
Confidence 9887643 67898899999999976
No 26
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.71 E-value=4.6e-16 Score=145.71 Aligned_cols=217 Identities=17% Similarity=0.209 Sum_probs=159.0
Q ss_pred ceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccC---eEEEEEEeCCCcccccchhhhhCCCCCCC
Q 021368 33 LVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITGEAP 108 (313)
Q Consensus 33 ~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~---~v~f~~vd~~~~~~~~~l~~~~~v~~~~~ 108 (313)
.|..|+.++|+..+..+..++|.||++| ++|+++.|.|.++|..+.+ .+.|+.|||+. +..+|+++||.++
T Consensus 2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~---~~~l~~~~~i~~~-- 76 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE---EKDLAQKYGVSGY-- 76 (462)
T ss_pred CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC---cHHHHHhCCCccc--
Confidence 4678999999999888888899999999 9999999999999998875 39999999998 5699999999999
Q ss_pred cEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEc-CcChHHHhhcCCCcEEEEEeC
Q 021368 109 KVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVV-GNNFDEIVLDESKDVLLEIYA 187 (313)
Q Consensus 109 P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~-~~~f~~~l~~~~k~~lv~fy~ 187 (313)
|+++++.+|......|.|.++.++|.+|+.+.+. ..+..++ .++++.++.. ....+|.|+.
T Consensus 77 Pt~~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~-----------------~~~~~i~~~~~~~~~~~~-~~~~vi~~~~ 138 (462)
T TIGR01130 77 PTLKIFRNGEDSVSDYNGPRDADGIVKYMKKQSG-----------------PAVKEIETVADLEAFLAD-DDVVVIGFFK 138 (462)
T ss_pred cEEEEEeCCccceeEecCCCCHHHHHHHHHHhcC-----------------CCceeecCHHHHHHHHhc-CCcEEEEEEC
Confidence 9999998776324678999999999999999875 3344554 5677777754 5666777765
Q ss_pred CCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceEEEEeCCCCCcCceeeccCc--CHHHHHHHHH
Q 021368 188 PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDR--TVVALYKFLK 265 (313)
Q Consensus 188 ~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~--~~~~l~~fi~ 265 (313)
. .. ......+.++|..+... ..+.....+......++. ..|.+.+|...........|.|.. +.+.|..||+
T Consensus 139 ~-~~--~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~ 212 (462)
T TIGR01130 139 D-LD--SELNDTFLSVAEKLRDV--YFFFAHSSDVAAFAKLGA-FPDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIR 212 (462)
T ss_pred C-CC--cHHHHHHHHHHHHhhhc--cceEEecCCHHHHhhcCC-CCCcEEEecccccccccccccCcccCCHHHHHHHHH
Confidence 4 22 46778899999988773 332222222222244444 346666665443321223577754 5689999999
Q ss_pred hcCCCCccccCCC
Q 021368 266 KNASIPFKIQKPT 278 (313)
Q Consensus 266 ~~~~~~~~~~~~~ 278 (313)
.+.-+.+....+.
T Consensus 213 ~~~~p~v~~~~~~ 225 (462)
T TIGR01130 213 AESLPLVGEFTQE 225 (462)
T ss_pred HcCCCceEeeCCc
Confidence 9987666655444
No 27
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.71 E-value=4.8e-17 Score=120.05 Aligned_cols=100 Identities=14% Similarity=0.184 Sum_probs=90.4
Q ss_pred CceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcE
Q 021368 32 PLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV 110 (313)
Q Consensus 32 ~~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~ 110 (313)
|.+.+|+.++|+..+..+..++|.||++| ++|+.+.|.|.++|.++++.+.|+.|||++ ++.+|++++|.++ |+
T Consensus 1 ~~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~--Pt 75 (101)
T cd03003 1 PEIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD---DRMLCRSQGVNSY--PS 75 (101)
T ss_pred CCeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc---cHHHHHHcCCCcc--CE
Confidence 45789999999998888888999999999 999999999999999999999999999998 6699999999999 99
Q ss_pred EEEEcCCCCceeccCCCCCHHHHHHHH
Q 021368 111 LAYTGNDDAKKHILDGELTLDKIKTFG 137 (313)
Q Consensus 111 i~~~~~~~~~~~~~~g~~~~~~i~~fi 137 (313)
+++|..|. ....|.|.++.+.|.+|+
T Consensus 76 ~~~~~~g~-~~~~~~G~~~~~~l~~f~ 101 (101)
T cd03003 76 LYVFPSGM-NPEKYYGDRSKESLVKFA 101 (101)
T ss_pred EEEEcCCC-CcccCCCCCCHHHHHhhC
Confidence 99998775 356789999999998874
No 28
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.71 E-value=9.2e-17 Score=117.39 Aligned_cols=92 Identities=21% Similarity=0.417 Sum_probs=81.6
Q ss_pred cChHHHhhcC-CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCC
Q 021368 168 NNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNK 244 (313)
Q Consensus 168 ~~f~~~l~~~-~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~ 244 (313)
++|++.+.+. +++++|+||++||++|+.+.+.+.+++..+.+ .+.++.+|++.+.. .++++.++|++++|++|+.
T Consensus 1 ~~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 1 QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG--QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred CChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC--cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEE
Confidence 3677778655 68999999999999999999999999999976 58999999999876 7899999999999998877
Q ss_pred CcCceeeccCcCHHHHHHHH
Q 021368 245 SFDPINVDVDRTVVALYKFL 264 (313)
Q Consensus 245 ~~~~~~y~g~~~~~~l~~fi 264 (313)
+. .+.|..+.+.|..||
T Consensus 79 ~~---~~~g~~~~~~l~~~l 95 (96)
T cd02956 79 VD---GFQGAQPEEQLRQML 95 (96)
T ss_pred ee---eecCCCCHHHHHHHh
Confidence 54 799999999999987
No 29
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.70 E-value=7.3e-17 Score=134.54 Aligned_cols=106 Identities=27% Similarity=0.583 Sum_probs=92.7
Q ss_pred CCCeEEEcCcChHHHhhcC----CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCc
Q 021368 159 DGDVKIVVGNNFDEIVLDE----SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDG 232 (313)
Q Consensus 159 ~~~v~~l~~~~f~~~l~~~----~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~ 232 (313)
...|..++.++|++.+... +++++|+||++||++|+.+.|.|.++++.+++ .+.++.+|++.+.. ++|+|.+
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~--~v~~~~VD~~~~~~l~~~~~I~~ 106 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG--QVNVADLDATRALNLAKRFAIKG 106 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC--CeEEEEecCcccHHHHHHcCCCc
Confidence 3568999999999988543 57999999999999999999999999999986 68999999998866 7899999
Q ss_pred CceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368 233 FPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 269 (313)
Q Consensus 233 ~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~ 269 (313)
+|++++|++|..+. .+.|..+.+.|.+|+.++..
T Consensus 107 ~PTl~~f~~G~~v~---~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 107 YPTLLLFDKGKMYQ---YEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred CCEEEEEECCEEEE---eeCCCCCHHHHHHHHHHHHH
Confidence 99999999887652 45577899999999999863
No 30
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.70 E-value=1.2e-16 Score=117.95 Aligned_cols=100 Identities=48% Similarity=0.953 Sum_probs=88.5
Q ss_pred EcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCC
Q 021368 165 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAG 242 (313)
Q Consensus 165 l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g 242 (313)
|++++|++.+. .+++++|+||++||+.|+.+.+.|..++..+.+...+.++.+|++.+.. .++++.++|++++|++|
T Consensus 1 l~~~~~~~~~~-~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 1 LTASNFDDIVL-SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred CchhhHHHHhc-cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 45688999885 7889999999999999999999999999999875569999999998866 78999999999999988
Q ss_pred CCCcCceeeccCcCHHHHHHHHHhcC
Q 021368 243 NKSFDPINVDVDRTVVALYKFLKKNA 268 (313)
Q Consensus 243 ~~~~~~~~y~g~~~~~~l~~fi~~~~ 268 (313)
.. +..|.|..+.+.|..||.+++
T Consensus 80 ~~---~~~~~g~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 80 KK---PVDYEGGRDLEAIVEFVNEKS 102 (102)
T ss_pred Cc---ceeecCCCCHHHHHHHHHhcC
Confidence 75 348999999999999998864
No 31
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.69 E-value=1.3e-16 Score=119.12 Aligned_cols=101 Identities=12% Similarity=0.039 Sum_probs=89.4
Q ss_pred CCceEEeCCCccccc---ccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchh-hhhCCCC
Q 021368 31 LPLVTIFTRENAPSV---FESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVS-EYFGITG 105 (313)
Q Consensus 31 ~~~v~~lt~~~~~~~---~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~-~~~~v~~ 105 (313)
.+.|.+|++.+|++. ......++|.||++| ++|+.+.|.|+++|+++++.+.|+.|||+. +..+| ++|+|.+
T Consensus 8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~---~~~l~~~~~~I~~ 84 (113)
T cd03006 8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWW---PQGKCRKQKHFFY 84 (113)
T ss_pred CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC---ChHHHHHhcCCcc
Confidence 466899999999986 567778889999999 999999999999999999999999999998 55899 5899999
Q ss_pred CCCcEEEEEcCCCCceeccCCCCCHHHHHHHH
Q 021368 106 EAPKVLAYTGNDDAKKHILDGELTLDKIKTFG 137 (313)
Q Consensus 106 ~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi 137 (313)
+ |++.+|.+|. ....|.|.++.+.|..|+
T Consensus 85 ~--PTl~lf~~g~-~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 85 F--PVIHLYYRSR-GPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred c--CEEEEEECCc-cceEEeCCCCHHHHHhhC
Confidence 9 9999998765 457789999999998873
No 32
>PHA02278 thioredoxin-like protein
Probab=99.69 E-value=1e-16 Score=117.75 Aligned_cols=90 Identities=13% Similarity=0.218 Sum_probs=76.6
Q ss_pred cChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc----c--ccCCCCcCceEEEEeC
Q 021368 168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE----H--HRAKSDGFPTILFFPA 241 (313)
Q Consensus 168 ~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----~--~~~~v~~~P~i~~~~~ 241 (313)
++|.+.+ ..+++++|+|||+||++|+.+.|.+.+++..+.. .+.|+.+|++.+. . .+++|.++||+++|++
T Consensus 5 ~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~--~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~ 81 (103)
T PHA02278 5 VDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDI--KKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKD 81 (103)
T ss_pred HHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC--CceEEEEECCccccccHHHHHHCCCccccEEEEEEC
Confidence 5677777 5789999999999999999999999999987543 4678999998752 2 7899999999999999
Q ss_pred CCCCcCceeeccCcCHHHHHHH
Q 021368 242 GNKSFDPINVDVDRTVVALYKF 263 (313)
Q Consensus 242 g~~~~~~~~y~g~~~~~~l~~f 263 (313)
|..+. ++.|..+.+.|.+|
T Consensus 82 G~~v~---~~~G~~~~~~l~~~ 100 (103)
T PHA02278 82 GQLVK---KYEDQVTPMQLQEL 100 (103)
T ss_pred CEEEE---EEeCCCCHHHHHhh
Confidence 98875 88898888887765
No 33
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.6e-16 Score=142.56 Aligned_cols=228 Identities=23% Similarity=0.373 Sum_probs=171.3
Q ss_pred CcccccCCCCCCHHHHHHHHHhcCCC-------c-eEEeCCCcccccc-cCCCccEEEEEeeC-CchhhhhHHHHHHHHh
Q 021368 7 EKISYFADGKFDKSTIADFVFSNKLP-------L-VTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKS 76 (313)
Q Consensus 7 ~~~~~y~~g~~~~~~l~~fi~~~~~~-------~-v~~lt~~~~~~~~-~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~ 76 (313)
...+.| +|..+...+..|+.....+ . +..++..+|.... .....++|.||+|| ++|+.+.|.|++++..
T Consensus 112 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~ 190 (383)
T KOG0191|consen 112 KKPIDY-SGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKL 190 (383)
T ss_pred Cceeec-cCcccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHH
Confidence 578999 9999999999999877655 3 5666666766533 34556899999999 9999999999999999
Q ss_pred cc--CeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Q 021368 77 FK--GKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPI 154 (313)
Q Consensus 77 ~~--~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~ 154 (313)
++ +.+.++.+||+. +..+|+.++|+++ |++.+|..+....+.+.|.++.+.|..|+.+........ ..+
T Consensus 191 ~~~~~~v~~~~~d~~~---~~~~~~~~~v~~~--Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~~~~----~~~ 261 (383)
T KOG0191|consen 191 LKSKENVELGKIDATV---HKSLASRLEVRGY--PTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRNIPE----PEL 261 (383)
T ss_pred hccCcceEEEeeccch---HHHHhhhhcccCC--ceEEEecCCCcccccccccccHHHHHHHHHhhcCCCCCC----ccc
Confidence 96 579999999996 7799999999999 999999887652455689999999999999987643111 111
Q ss_pred CCCCCC---CeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHH-hcCCCcEEEEEEeCCCccc--ccC
Q 021368 155 PETNDG---DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH-LRGVDSIVIAKMDGTTNEH--HRA 228 (313)
Q Consensus 155 ~~~~~~---~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~-~~~~~~v~~~~vd~~~~~~--~~~ 228 (313)
.+.... ....++.+++... ......+++.|+++||.+|....+.+...+.. ......+.+..++|..... +..
T Consensus 262 ~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 340 (383)
T KOG0191|consen 262 KEIEDKDTFSPTFLDTAEFLDS-LEKKKNKFVKFYAPWCGHCGGFAPVYEDKAELGYPDLSKIKAAKLDCALLKSLCQKA 340 (383)
T ss_pred ccccCccccccchhhhhhhhhh-hHHhhhhHhhhhcchhhcccccchhHHHHHhccccccccceeeccccccccchhhHh
Confidence 111111 0111111222221 12346789999999999999999999999988 2233468888888887665 566
Q ss_pred CCCcCceEEEEeCCCCC
Q 021368 229 KSDGFPTILFFPAGNKS 245 (313)
Q Consensus 229 ~v~~~P~i~~~~~g~~~ 245 (313)
.++.+|++.++..+...
T Consensus 341 ~~~~~~~~~~~~~~~~~ 357 (383)
T KOG0191|consen 341 IVRGYPTIKLYNYGKNP 357 (383)
T ss_pred hhhcCceeEeecccccc
Confidence 78899999999887754
No 34
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.68 E-value=3.4e-16 Score=116.06 Aligned_cols=99 Identities=30% Similarity=0.622 Sum_probs=85.6
Q ss_pred eEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC--ccc--ccCCCCcCceEE
Q 021368 162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT--NEH--HRAKSDGFPTIL 237 (313)
Q Consensus 162 v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~--~~~--~~~~v~~~P~i~ 237 (313)
|..++..+|++.+. .+++++|+||++||++|+.+.+.+..++..+.....+.++.+|++. +.. .++++.++|+++
T Consensus 2 ~~~l~~~~~~~~~~-~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 2 VVHLTDEDFRKFLK-KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred eEEechHhHHHHHh-hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence 56788899998874 5669999999999999999999999999999754468999999998 443 689999999999
Q ss_pred EEeCCCCCcCceeeccCcCHHHHHHHH
Q 021368 238 FFPAGNKSFDPINVDVDRTVVALYKFL 264 (313)
Q Consensus 238 ~~~~g~~~~~~~~y~g~~~~~~l~~fi 264 (313)
+|++|+... .|.|..+.+.|.+||
T Consensus 81 ~~~~g~~~~---~~~g~~~~~~l~~~l 104 (104)
T cd02997 81 YFENGKFVE---KYEGERTAEDIIEFM 104 (104)
T ss_pred EEeCCCeeE---EeCCCCCHHHHHhhC
Confidence 999987543 899999999999885
No 35
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.67 E-value=8.8e-17 Score=119.04 Aligned_cols=82 Identities=21% Similarity=0.227 Sum_probs=71.3
Q ss_pred CcChHHHhhc-CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCC
Q 021368 167 GNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGN 243 (313)
Q Consensus 167 ~~~f~~~l~~-~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~ 243 (313)
.+.|++.+.. .+++++|.|||+||++|+.|.|.+.+++..+.+ .+.|+++|++.+.. .+++|.++||+++|++|+
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~--~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~ 79 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN--FAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNK 79 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC--ceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCE
Confidence 3567777753 578999999999999999999999999999876 58999999999877 789999999999999999
Q ss_pred CCcCceeecc
Q 021368 244 KSFDPINVDV 253 (313)
Q Consensus 244 ~~~~~~~y~g 253 (313)
.+. ...|
T Consensus 80 ~v~---~~~G 86 (114)
T cd02954 80 HMK---IDLG 86 (114)
T ss_pred EEE---EEcC
Confidence 875 4545
No 36
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.67 E-value=2.7e-16 Score=115.49 Aligned_cols=89 Identities=24% Similarity=0.434 Sum_probs=74.7
Q ss_pred ChHHHhh-cCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCC-Cccc--ccCCCCcCceEEEEeCCCC
Q 021368 169 NFDEIVL-DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-TNEH--HRAKSDGFPTILFFPAGNK 244 (313)
Q Consensus 169 ~f~~~l~-~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~-~~~~--~~~~v~~~P~i~~~~~g~~ 244 (313)
++.+++. ..+++++|.|||+||++|+.++|.|.++++.+++ +.++.+|++ .+.. .++++.++||+++|++| .
T Consensus 8 ~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~---~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~ 83 (100)
T cd02999 8 IALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ---IRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-P 83 (100)
T ss_pred HHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc---CceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-c
Confidence 3444443 4678999999999999999999999999999864 778889987 4443 78999999999999988 4
Q ss_pred CcCceeeccCcCHHHHHHHH
Q 021368 245 SFDPINVDVDRTVVALYKFL 264 (313)
Q Consensus 245 ~~~~~~y~g~~~~~~l~~fi 264 (313)
. .+|.|..+.+.|.+||
T Consensus 84 ~---~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 84 R---VRYNGTRTLDSLAAFY 100 (100)
T ss_pred e---eEecCCCCHHHHHhhC
Confidence 4 3899999999999985
No 37
>PRK10996 thioredoxin 2; Provisional
Probab=99.67 E-value=4.7e-16 Score=121.29 Aligned_cols=104 Identities=23% Similarity=0.557 Sum_probs=91.5
Q ss_pred CCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceE
Q 021368 159 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI 236 (313)
Q Consensus 159 ~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i 236 (313)
.+.+..++..+|++.+ +.+++++|+||++||++|+.+.+.|.+++..+.. .+.++.+|++.+.. .+++|.++|++
T Consensus 34 ~~~~i~~~~~~~~~~i-~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~V~~~Ptl 110 (139)
T PRK10996 34 DGEVINATGETLDKLL-QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG--KVRFVKVNTEAERELSARFRIRSIPTI 110 (139)
T ss_pred CCCCEEcCHHHHHHHH-hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CeEEEEEeCCCCHHHHHhcCCCccCEE
Confidence 4556778889999876 5689999999999999999999999999998876 69999999998766 78999999999
Q ss_pred EEEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368 237 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 268 (313)
Q Consensus 237 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~ 268 (313)
++|++|+.+. .+.|..+.+.|.+||++++
T Consensus 111 ii~~~G~~v~---~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 111 MIFKNGQVVD---MLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred EEEECCEEEE---EEcCCCCHHHHHHHHHHhC
Confidence 9999888764 7889999999999998763
No 38
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.66 E-value=4.4e-16 Score=115.67 Aligned_cols=98 Identities=22% Similarity=0.331 Sum_probs=78.8
Q ss_pred eEEEcCcChHHHhhcCCCcEEEEEeC--CCCc---cchhhhHHHHHHHHHhcCCCcEEEEEEeCCC-----ccc--ccCC
Q 021368 162 VKIVVGNNFDEIVLDESKDVLLEIYA--PWCG---HCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-----NEH--HRAK 229 (313)
Q Consensus 162 v~~l~~~~f~~~l~~~~k~~lv~fy~--~~C~---~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~-----~~~--~~~~ 229 (313)
+..|+..+|++.| ...+.+||.||+ |||+ +|..+.+.+...+. .+.++.|||+. +.. ++|+
T Consensus 3 ~v~L~~~nF~~~v-~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~------~v~lakVd~~d~~~~~~~~L~~~y~ 75 (116)
T cd03007 3 CVDLDTVTFYKVI-PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD------DLLVAEVGIKDYGEKLNMELGERYK 75 (116)
T ss_pred eeECChhhHHHHH-hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC------ceEEEEEecccccchhhHHHHHHhC
Confidence 6789999999988 567889999999 8888 56555555544432 48999999953 322 7999
Q ss_pred CC--cCceEEEEeCCCCCcCceeeccC-cCHHHHHHHHHhc
Q 021368 230 SD--GFPTILFFPAGNKSFDPINVDVD-RTVVALYKFLKKN 267 (313)
Q Consensus 230 v~--~~P~i~~~~~g~~~~~~~~y~g~-~~~~~l~~fi~~~ 267 (313)
|+ ++||+++|++|... .++.|.|. ++.+.|++||+++
T Consensus 76 I~~~gyPTl~lF~~g~~~-~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 76 LDKESYPVIYLFHGGDFE-NPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCcCCCCEEEEEeCCCcC-CCccCCCCcccHHHHHHHHHhc
Confidence 99 99999999998533 45699996 9999999999987
No 39
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.66 E-value=3.5e-16 Score=116.10 Aligned_cols=101 Identities=22% Similarity=0.253 Sum_probs=88.7
Q ss_pred CceEEeCCCcccccc-cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCc
Q 021368 32 PLVTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK 109 (313)
Q Consensus 32 ~~v~~lt~~~~~~~~-~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P 109 (313)
|.+.+++.++|++.+ ..+..++|.||++| ++|+.+.|.|.+++.++.+.+.|+.|||+. ++.+|++++|+++ |
T Consensus 1 ~~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~i~~~--P 75 (104)
T cd03004 1 PSVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK---YESLCQQANIRAY--P 75 (104)
T ss_pred CcceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc---hHHHHHHcCCCcc--c
Confidence 457789999999875 34557888899999 999999999999999999889999999998 6699999999999 9
Q ss_pred EEEEEcCCCCceeccCCCCC-HHHHHHHH
Q 021368 110 VLAYTGNDDAKKHILDGELT-LDKIKTFG 137 (313)
Q Consensus 110 ~i~~~~~~~~~~~~~~g~~~-~~~i~~fi 137 (313)
++++|..++.....|.|..+ .++|.+|+
T Consensus 76 t~~~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 76 TIRLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EEEEEcCCCCCceEccCCCCCHHHHHhhC
Confidence 99999887556778999887 99998885
No 40
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.65 E-value=1e-15 Score=112.72 Aligned_cols=98 Identities=30% Similarity=0.562 Sum_probs=85.9
Q ss_pred cCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCC
Q 021368 166 VGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGN 243 (313)
Q Consensus 166 ~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~ 243 (313)
+.++|.+.+.+.+++++|+||++||+.|+.+.+.+.+++..+.+ .+.++.+|++.+.. .++++.++|++++|++|.
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG--KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc
Confidence 45678888876678999999999999999999999999988865 69999999998875 789999999999999887
Q ss_pred CCcCceeeccCcCHHHHHHHHHhcC
Q 021368 244 KSFDPINVDVDRTVVALYKFLKKNA 268 (313)
Q Consensus 244 ~~~~~~~y~g~~~~~~l~~fi~~~~ 268 (313)
... .+.|..+.+.|..||++++
T Consensus 80 ~~~---~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 80 EVD---RSVGALPKAALKQLINKNL 101 (101)
T ss_pred Eee---eecCCCCHHHHHHHHHhhC
Confidence 653 7788889999999998763
No 41
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.65 E-value=5.7e-16 Score=115.75 Aligned_cols=100 Identities=23% Similarity=0.298 Sum_probs=88.6
Q ss_pred ceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhcc------CeEEEEEEeCCCcccccchhhhhCCCC
Q 021368 33 LVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK------GKLIFVYVQMDNEDVGKPVSEYFGITG 105 (313)
Q Consensus 33 ~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~------~~v~f~~vd~~~~~~~~~l~~~~~v~~ 105 (313)
.+.++++++|++.+.....++|.||++| ++|+.+.|.|++++..++ +.+.|+.|||+. ++.+|++|||++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~---~~~l~~~~~v~~ 78 (108)
T cd02996 2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK---ESDIADRYRINK 78 (108)
T ss_pred ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC---CHHHHHhCCCCc
Confidence 4778999999999888888888999999 999999999999998764 259999999999 569999999999
Q ss_pred CCCcEEEEEcCCCCceeccCCCCCHHHHHHHH
Q 021368 106 EAPKVLAYTGNDDAKKHILDGELTLDKIKTFG 137 (313)
Q Consensus 106 ~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi 137 (313)
+ |++.+|.+|......|.|.++.++|.+||
T Consensus 79 ~--Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 79 Y--PTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred C--CEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 9 99999988764557889999999999985
No 42
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.64 E-value=6.3e-16 Score=114.26 Aligned_cols=101 Identities=19% Similarity=0.322 Sum_probs=91.3
Q ss_pred eEEeCCCcccccccC-CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEE
Q 021368 34 VTIFTRENAPSVFES-PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVL 111 (313)
Q Consensus 34 v~~lt~~~~~~~~~~-~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i 111 (313)
|..+|.++|++.+.. ...++|+||++| ++|+.+.|.|.+++..+.+.+.|+.|||++ ++.+|++|+|.++ |++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~---~~~l~~~~~v~~~--Pt~ 75 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDE---NKELCKKYGVKSV--PTI 75 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTT---SHHHHHHTTCSSS--SEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhc---cchhhhccCCCCC--CEE
Confidence 568999999998876 778889999999 999999999999999999889999999998 6799999999999 999
Q ss_pred EEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021368 112 AYTGNDDAKKHILDGELTLDKIKTFGEDF 140 (313)
Q Consensus 112 ~~~~~~~~~~~~~~g~~~~~~i~~fi~~~ 140 (313)
+++.+|... ..+.|.++.++|.+||+++
T Consensus 76 ~~~~~g~~~-~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 76 IFFKNGKEV-KRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EEEETTEEE-EEEESSSSHHHHHHHHHHH
T ss_pred EEEECCcEE-EEEECCCCHHHHHHHHHcC
Confidence 999888643 3789999999999999874
No 43
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.64 E-value=1.1e-15 Score=112.79 Aligned_cols=96 Identities=20% Similarity=0.413 Sum_probs=80.0
Q ss_pred EcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-ccCCCCcCceEEEEeCCC
Q 021368 165 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTILFFPAGN 243 (313)
Q Consensus 165 l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-~~~~v~~~P~i~~~~~g~ 243 (313)
-+.++|.+.+ +.+++++|+||++||++|+.+.+.+..++..+.+. .+.|+.+|++.... .+|++.++|++++|++|.
T Consensus 5 ~~~~~~~~~i-~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~-~~~~~~vd~d~~~~~~~~~v~~~Pt~~~~~~g~ 82 (102)
T cd02948 5 NNQEEWEELL-SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDD-LLHFATAEADTIDTLKRYRGKCEPTFLFYKNGE 82 (102)
T ss_pred cCHHHHHHHH-ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCC-cEEEEEEeCCCHHHHHHcCCCcCcEEEEEECCE
Confidence 3567788866 57889999999999999999999999999998742 47899999883333 799999999999999998
Q ss_pred CCcCceeeccCcCHHHHHHHHHh
Q 021368 244 KSFDPINVDVDRTVVALYKFLKK 266 (313)
Q Consensus 244 ~~~~~~~y~g~~~~~~l~~fi~~ 266 (313)
.+. +..| .+...|.++|.+
T Consensus 83 ~~~---~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 83 LVA---VIRG-ANAPLLNKTITE 101 (102)
T ss_pred EEE---EEec-CChHHHHHHHhh
Confidence 764 6667 477889888865
No 44
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.64 E-value=1.6e-15 Score=138.68 Aligned_cols=106 Identities=30% Similarity=0.603 Sum_probs=92.1
Q ss_pred CCCeEEEcCcChHHHhh--cCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc----ccCCCCc
Q 021368 159 DGDVKIVVGNNFDEIVL--DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDG 232 (313)
Q Consensus 159 ~~~v~~l~~~~f~~~l~--~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~----~~~~v~~ 232 (313)
...|..|+.++|++.+. +.+++++|.||++||++|+.+.|.|.+++..+++. .+.|+.+|++.+.. ++++|.+
T Consensus 350 ~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~-~v~~~kVdvD~~~~~~~~~~~~I~~ 428 (463)
T TIGR00424 350 SNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS-GVKVAKFRADGDQKEFAKQELQLGS 428 (463)
T ss_pred CCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CcEEEEEECCCCccHHHHHHcCCCc
Confidence 35788999999999884 56789999999999999999999999999999764 48899999987642 5799999
Q ss_pred CceEEEEeCCCCCcCceeec-cCcCHHHHHHHHHhc
Q 021368 233 FPTILFFPAGNKSFDPINVD-VDRTVVALYKFLKKN 267 (313)
Q Consensus 233 ~P~i~~~~~g~~~~~~~~y~-g~~~~~~l~~fi~~~ 267 (313)
+||+++|++|.. .++.|. |.++.+.|+.||+..
T Consensus 429 ~PTii~Fk~g~~--~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 429 FPTILFFPKHSS--RPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred cceEEEEECCCC--CceeCCCCCCCHHHHHHHHHhh
Confidence 999999999975 567898 489999999999864
No 45
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.64 E-value=2.1e-15 Score=113.48 Aligned_cols=100 Identities=34% Similarity=0.649 Sum_probs=82.4
Q ss_pred CeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCC-CcEEEEEEeCCCccc----ccCCCCcCce
Q 021368 161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEH----HRAKSDGFPT 235 (313)
Q Consensus 161 ~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~~----~~~~v~~~P~ 235 (313)
.+..++.++|++.+.+.+++++|+||++||++|+.+.+.|.+++..++.. +.+.++.+||+.... .++++.++|+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 57889999999999877889999999999999999999999999998754 358999999875332 6899999999
Q ss_pred EEEEeCCCCC-cCceeeccC-cCHHHH
Q 021368 236 ILFFPAGNKS-FDPINVDVD-RTVVAL 260 (313)
Q Consensus 236 i~~~~~g~~~-~~~~~y~g~-~~~~~l 260 (313)
+++|++|... .....|+|. +..+++
T Consensus 82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~ 108 (114)
T cd02992 82 LRYFPPFSKEATDGLKQEGPERDVNEL 108 (114)
T ss_pred EEEECCCCccCCCCCcccCCccCHHHH
Confidence 9999888753 133567775 555555
No 46
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.64 E-value=1.2e-15 Score=112.76 Aligned_cols=94 Identities=22% Similarity=0.270 Sum_probs=77.8
Q ss_pred CcChHHHhhcC-CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-----ccCCCCcCceEEEEe
Q 021368 167 GNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HRAKSDGFPTILFFP 240 (313)
Q Consensus 167 ~~~f~~~l~~~-~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----~~~~v~~~P~i~~~~ 240 (313)
.++|++.+.+. +++++|.||++||++|+.+.|.+.+++..+ . .+.|+.+|++.+.. .+++|.++||+++|+
T Consensus 3 ~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~--~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~ 79 (103)
T cd02985 3 VEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-N--DVVFLLVNGDENDSTMELCRREKIIEVPHFLFYK 79 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-C--CCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEe
Confidence 45777877644 789999999999999999999999999998 3 58999999988741 689999999999999
Q ss_pred CCCCCcCceeeccCcCHHHHHHHHHhc
Q 021368 241 AGNKSFDPINVDVDRTVVALYKFLKKN 267 (313)
Q Consensus 241 ~g~~~~~~~~y~g~~~~~~l~~fi~~~ 267 (313)
+|+.+. .+.| .....|.+-+..+
T Consensus 80 ~G~~v~---~~~G-~~~~~l~~~~~~~ 102 (103)
T cd02985 80 DGEKIH---EEEG-IGPDELIGDVLYY 102 (103)
T ss_pred CCeEEE---EEeC-CCHHHHHHHHHhc
Confidence 998764 7888 4566777766543
No 47
>PLN02309 5'-adenylylsulfate reductase
Probab=99.63 E-value=1.7e-15 Score=138.40 Aligned_cols=106 Identities=29% Similarity=0.610 Sum_probs=92.2
Q ss_pred CCCeEEEcCcChHHHhh--cCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCC-Cccc---ccCCCCc
Q 021368 159 DGDVKIVVGNNFDEIVL--DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-TNEH---HRAKSDG 232 (313)
Q Consensus 159 ~~~v~~l~~~~f~~~l~--~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~-~~~~---~~~~v~~ 232 (313)
...|..++.++|++++. +.+++++|+||++||++|+.|.+.|.+++..+.+. .+.|+.+|++ .+.. +.++|.+
T Consensus 344 ~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~-~V~f~kVD~d~~~~~la~~~~~I~~ 422 (457)
T PLN02309 344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS-GVKVAKFRADGDQKEFAKQELQLGS 422 (457)
T ss_pred CCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CeEEEEEECCCcchHHHHhhCCCce
Confidence 35788999999999874 56889999999999999999999999999999764 6999999999 4333 3699999
Q ss_pred CceEEEEeCCCCCcCceeecc-CcCHHHHHHHHHhc
Q 021368 233 FPTILFFPAGNKSFDPINVDV-DRTVVALYKFLKKN 267 (313)
Q Consensus 233 ~P~i~~~~~g~~~~~~~~y~g-~~~~~~l~~fi~~~ 267 (313)
+||+++|++|.. .++.|.| .++.+.|+.||++.
T Consensus 423 ~PTil~f~~g~~--~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 423 FPTILLFPKNSS--RPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eeEEEEEeCCCC--CeeecCCCCcCHHHHHHHHHHh
Confidence 999999999876 5778986 79999999999874
No 48
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.62 E-value=1.6e-15 Score=112.73 Aligned_cols=104 Identities=14% Similarity=0.101 Sum_probs=83.9
Q ss_pred eEEeCCCcccccccCCCccEEEEEeeCCchhhhhHHHHHHHHhccC---eEEEEEEeCCCccc--ccchhhhhCCC--CC
Q 021368 34 VTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDV--GKPVSEYFGIT--GE 106 (313)
Q Consensus 34 v~~lt~~~~~~~~~~~~~~~v~f~~~~~~c~~~~~~~~~~a~~~~~---~v~f~~vd~~~~~~--~~~l~~~~~v~--~~ 106 (313)
+..|++.+|++++.+...++|.||++|+.|.+ .|++++||.++.. .|.++.|||+++.. +.+||++|||+ +|
T Consensus 3 ~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gy 81 (116)
T cd03007 3 CVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESY 81 (116)
T ss_pred eeECChhhHHHHHhcCCcEEEEEeCCCCCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCC
Confidence 67899999999999998999999996655555 3667777766632 49999999964221 57899999999 88
Q ss_pred CCcEEEEEcCCC-CceeccCCC-CCHHHHHHHHHHH
Q 021368 107 APKVLAYTGNDD-AKKHILDGE-LTLDKIKTFGEDF 140 (313)
Q Consensus 107 ~~P~i~~~~~~~-~~~~~~~g~-~~~~~i~~fi~~~ 140 (313)
|||.+|.+|. ..+..|.|. ++.+.|.+|+.+.
T Consensus 82 --PTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 82 --PVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred --CEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 9999999874 346789996 9999999999864
No 49
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.61 E-value=2.6e-15 Score=112.94 Aligned_cols=104 Identities=18% Similarity=0.186 Sum_probs=90.3
Q ss_pred CCceEEeCCCcccccccCCCccEEEEEeeC--Cc--hh--hhhHHHHHHHHhc--cCeEEEEEEeCCCcccccchhhhhC
Q 021368 31 LPLVTIFTRENAPSVFESPIKNQLLLFAVS--ND--SE--KLLPVFEEAAKSF--KGKLIFVYVQMDNEDVGKPVSEYFG 102 (313)
Q Consensus 31 ~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~--~~--c~--~~~~~~~~~a~~~--~~~v~f~~vd~~~~~~~~~l~~~~~ 102 (313)
...|..||.++|++.+......+|+||.+| ++ |+ .+.|.+.++|.++ .+.+.|+.||+++ +++++++||
T Consensus 8 ~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~---~~~La~~~~ 84 (120)
T cd03065 8 KDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK---DAKVAKKLG 84 (120)
T ss_pred CcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC---CHHHHHHcC
Confidence 346888999999998887777777777776 54 99 8899999999998 7789999999999 679999999
Q ss_pred CCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHh
Q 021368 103 ITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL 141 (313)
Q Consensus 103 v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~ 141 (313)
|+++ ||+++|.+|. ...|.|.++.+.|.+|+.+++
T Consensus 85 I~~i--PTl~lfk~G~--~v~~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 85 LDEE--DSIYVFKDDE--VIEYDGEFAADTLVEFLLDLI 119 (120)
T ss_pred Cccc--cEEEEEECCE--EEEeeCCCCHHHHHHHHHHHh
Confidence 9999 9999999886 345899999999999999864
No 50
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.61 E-value=1e-14 Score=114.05 Aligned_cols=98 Identities=21% Similarity=0.348 Sum_probs=80.5
Q ss_pred cChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc----cccCCCCcCceEEEEe-CC
Q 021368 168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE----HHRAKSDGFPTILFFP-AG 242 (313)
Q Consensus 168 ~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----~~~~~v~~~P~i~~~~-~g 242 (313)
..|++.+ ..+++++|+||++||++|+.+.+.+.+++..+.+ .+.|+.+|++... ...|+|.++|++++|. +|
T Consensus 11 ~~~~~a~-~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~--~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G 87 (142)
T cd02950 11 TPPEVAL-SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD--QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREG 87 (142)
T ss_pred CCHHHHH-hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc--CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCC
Confidence 4566654 5789999999999999999999999999999876 4677777776543 2689999999999995 67
Q ss_pred CCCcCceeeccCcCHHHHHHHHHhcCCCC
Q 021368 243 NKSFDPINVDVDRTVVALYKFLKKNASIP 271 (313)
Q Consensus 243 ~~~~~~~~y~g~~~~~~l~~fi~~~~~~~ 271 (313)
..+. .+.|....+.|.++|.+.+...
T Consensus 88 ~~v~---~~~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 88 NEEG---QSIGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred CEEE---EEeCCCCHHHHHHHHHHHHcCC
Confidence 7654 7889888899999999987533
No 51
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.61 E-value=3.2e-15 Score=112.54 Aligned_cols=99 Identities=24% Similarity=0.351 Sum_probs=81.7
Q ss_pred CCeEEEcCcChHHHhhcCC--CcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-ccCCCCcCceE
Q 021368 160 GDVKIVVGNNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTI 236 (313)
Q Consensus 160 ~~v~~l~~~~f~~~l~~~~--k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-~~~~v~~~P~i 236 (313)
+.|..++.++|.+.+.+.+ ++++|+||++||++|+.+.+.+.+++..+. ++.|+++|++.+.. .++++.++|++
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~---~v~f~~vd~~~~~l~~~~~i~~~Pt~ 80 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP---ETKFVKINAEKAFLVNYLDIKVLPTL 80 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC---CcEEEEEEchhhHHHHhcCCCcCCEE
Confidence 5678899999999987653 899999999999999999999999999985 47899999998622 78999999999
Q ss_pred EEEeCCCCCcCceeecc-------CcCHHHHHHHH
Q 021368 237 LFFPAGNKSFDPINVDV-------DRTVVALYKFL 264 (313)
Q Consensus 237 ~~~~~g~~~~~~~~y~g-------~~~~~~l~~fi 264 (313)
++|++|+.+. ++.| ..+.+.|.+|+
T Consensus 81 ~~f~~G~~v~---~~~G~~~~~~~~~~~~~l~~~l 112 (113)
T cd02957 81 LVYKNGELID---NIVGFEELGGDDFTTEDLEKFL 112 (113)
T ss_pred EEEECCEEEE---EEecHHHhCCCCCCHHHHHHHh
Confidence 9999998875 5554 23455555554
No 52
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.61 E-value=3.5e-15 Score=117.13 Aligned_cols=91 Identities=18% Similarity=0.384 Sum_probs=78.0
Q ss_pred CCCeEEEcCcChHHHhhc-CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCc---
Q 021368 159 DGDVKIVVGNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDG--- 232 (313)
Q Consensus 159 ~~~v~~l~~~~f~~~l~~-~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~--- 232 (313)
...+..++.++|++.+.. .+++++|+||++||++|+.+.|.|.+++..+.+. ++.|+.+|++.+.. .+++|.+
T Consensus 27 ~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~-~v~f~~VDvd~~~~la~~~~V~~~~~ 105 (152)
T cd02962 27 PEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNN-NLKFGKIDIGRFPNVAEKFRVSTSPL 105 (152)
T ss_pred CCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC-CeEEEEEECCCCHHHHHHcCceecCC
Confidence 367889999999998854 3578999999999999999999999999998653 59999999998876 6788887
Q ss_pred ---CceEEEEeCCCCCcCceeecc
Q 021368 233 ---FPTILFFPAGNKSFDPINVDV 253 (313)
Q Consensus 233 ---~P~i~~~~~g~~~~~~~~y~g 253 (313)
+||+++|++|+.+. ++.|
T Consensus 106 v~~~PT~ilf~~Gk~v~---r~~G 126 (152)
T cd02962 106 SKQLPTIILFQGGKEVA---RRPY 126 (152)
T ss_pred cCCCCEEEEEECCEEEE---EEec
Confidence 99999999998875 4554
No 53
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.61 E-value=5.8e-15 Score=109.49 Aligned_cols=94 Identities=27% Similarity=0.599 Sum_probs=79.3
Q ss_pred cChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCC-CcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCC
Q 021368 168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNK 244 (313)
Q Consensus 168 ~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~ 244 (313)
++|++. ..++.++|.||++||++|+.+.|.|.+++..++.. ..+.++.+|++.+.. +++++.++|++++|.+|..
T Consensus 7 ~~~~~~--~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~~ 84 (104)
T cd03000 7 DSFKDV--RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDLA 84 (104)
T ss_pred hhhhhh--ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCCc
Confidence 567763 34679999999999999999999999999998653 259999999987665 7899999999999976533
Q ss_pred CcCceeeccCcCHHHHHHHHHhc
Q 021368 245 SFDPINVDVDRTVVALYKFLKKN 267 (313)
Q Consensus 245 ~~~~~~y~g~~~~~~l~~fi~~~ 267 (313)
..|.|..+.+.|.+|+++.
T Consensus 85 ----~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 85 ----YNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred ----eeecCCCCHHHHHHHHHhh
Confidence 3789999999999999864
No 54
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.60 E-value=9.7e-15 Score=107.37 Aligned_cols=94 Identities=16% Similarity=0.099 Sum_probs=83.3
Q ss_pred eEEEcCcChHHHhhcCCCcEEEEEeCCC--CccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEE
Q 021368 162 VKIVVGNNFDEIVLDESKDVLLEIYAPW--CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL 237 (313)
Q Consensus 162 v~~l~~~~f~~~l~~~~k~~lv~fy~~~--C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~ 237 (313)
.-.++..+|++.+ ..+.+++|+||++| |++|..+.|.|.+++.++.+ .+.|+.+|++.+.. .+|+|.++||++
T Consensus 12 ~~~~~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~--~v~f~kVdid~~~~la~~f~V~sIPTli 88 (111)
T cd02965 12 WPRVDAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG--RFRAAVVGRADEQALAARFGVLRTPALL 88 (111)
T ss_pred CcccccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC--cEEEEEEECCCCHHHHHHcCCCcCCEEE
Confidence 4468999999877 67789999999997 99999999999999999976 68999999999876 789999999999
Q ss_pred EEeCCCCCcCceeeccCcCHHHHH
Q 021368 238 FFPAGNKSFDPINVDVDRTVVALY 261 (313)
Q Consensus 238 ~~~~g~~~~~~~~y~g~~~~~~l~ 261 (313)
+|++|+.+. .+.|..+.+++.
T Consensus 89 ~fkdGk~v~---~~~G~~~~~e~~ 109 (111)
T cd02965 89 FFRDGRYVG---VLAGIRDWDEYV 109 (111)
T ss_pred EEECCEEEE---EEeCccCHHHHh
Confidence 999998875 788887777664
No 55
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.59 E-value=5.2e-15 Score=110.69 Aligned_cols=102 Identities=22% Similarity=0.279 Sum_probs=89.1
Q ss_pred eEEeCCCcccccccC-CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEE
Q 021368 34 VTIFTRENAPSVFES-PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVL 111 (313)
Q Consensus 34 v~~lt~~~~~~~~~~-~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i 111 (313)
|.+|+..+|+..+.. +.+++|.||++| ++|+.+.|.|.+++..+.+.+.|+.+||+... ++.+|++|+|.++ |++
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~-~~~~~~~~~i~~~--Pt~ 78 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK-NKPLCGKYGVQGF--PTL 78 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc-cHHHHHHcCCCcC--CEE
Confidence 678999999987654 444788899999 99999999999999999988999999999855 6689999999999 999
Q ss_pred EEEcCCC----CceeccCCCCCHHHHHHHHH
Q 021368 112 AYTGNDD----AKKHILDGELTLDKIKTFGE 138 (313)
Q Consensus 112 ~~~~~~~----~~~~~~~g~~~~~~i~~fi~ 138 (313)
+++..++ .....|.|.++.++|.+||.
T Consensus 79 ~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 79 KVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred EEEeCCCcccccccccccCccCHHHHHHHhC
Confidence 9998875 24677899999999999973
No 56
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.59 E-value=2.6e-14 Score=119.84 Aligned_cols=212 Identities=20% Similarity=0.211 Sum_probs=146.5
Q ss_pred eCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhcc-----CeEEEEEEeCCCcccccchhhhhCCCCCCCcE
Q 021368 37 FTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK-----GKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV 110 (313)
Q Consensus 37 lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~-----~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~ 110 (313)
++.+|++.+......++|-||++| ...+.+.|+|.++|.+++ +++.++.|||+.++ .++++|.|.-| ||
T Consensus 1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~---~ia~ky~I~Ky--PT 75 (375)
T KOG0912|consen 1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKED---DIADKYHINKY--PT 75 (375)
T ss_pred CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhh---HHhhhhccccC--ce
Confidence 466788888888777888899999 899999999999998776 57999999999955 99999999999 99
Q ss_pred EEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEcC-cChHHHhhcCCCcEEEEEeCCC
Q 021368 111 LAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVG-NNFDEIVLDESKDVLLEIYAPW 189 (313)
Q Consensus 111 i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~~-~~f~~~l~~~~k~~lv~fy~~~ 189 (313)
+.+|++|......|.|.++.+.+.+||++.++..+ .+... +.+..+....+..++.+|-...
T Consensus 76 lKvfrnG~~~~rEYRg~RsVeaL~efi~kq~s~~i-----------------~Ef~sl~~l~n~~~p~K~~vIgyF~~kd 138 (375)
T KOG0912|consen 76 LKVFRNGEMMKREYRGQRSVEALIEFIEKQLSDPI-----------------NEFESLDQLQNLDIPSKRTVIGYFPSKD 138 (375)
T ss_pred eeeeeccchhhhhhccchhHHHHHHHHHHHhccHH-----------------HHHHhHHHHHhhhccccceEEEEeccCC
Confidence 99999998777789999999999999999987332 22222 2333332223445566665444
Q ss_pred CccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceEEEEeCCCCCcCceeeccC-cCHHHHHHHHHhcC
Q 021368 190 CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVD-RTVVALYKFLKKNA 268 (313)
Q Consensus 190 C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i~~~~~g~~~~~~~~y~g~-~~~~~l~~fi~~~~ 268 (313)
.+. ...+.++|..+++.-.+.++.-|.... ....+.+ +++|+.+..... -.|.|. .+.+.+..||.+-+
T Consensus 139 spe----y~~~~kva~~lr~dc~f~V~~gD~~~~----~~~~~~~-~~~f~pd~~~~~-~~f~G~~~nf~el~~Wi~dKc 208 (375)
T KOG0912|consen 139 SPE----YDNLRKVASLLRDDCVFLVGFGDLLKP----HEPPGKN-ILVFDPDHSEPN-HEFLGSMTNFDELKQWIQDKC 208 (375)
T ss_pred Cch----HHHHHHHHHHHhhccEEEeeccccccC----CCCCCCc-eEEeCCCcCCcC-cccccccccHHHHHHHHHhcc
Confidence 333 457788888888732233332232211 1112222 455555444311 269995 46899999999987
Q ss_pred CCCccccCCCCC
Q 021368 269 SIPFKIQKPTSA 280 (313)
Q Consensus 269 ~~~~~~~~~~~~ 280 (313)
-+-++=.+-.++
T Consensus 209 vpLVREiTFeN~ 220 (375)
T KOG0912|consen 209 VPLVREITFENA 220 (375)
T ss_pred hhhhhhhhhccH
Confidence 554444443333
No 57
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.59 E-value=9.4e-15 Score=119.75 Aligned_cols=135 Identities=33% Similarity=0.527 Sum_probs=115.4
Q ss_pred CCcccCCcccccCCCC-CCHHHHHHHHHhcCCCceEEeCCCcccccccCCCccEEEEEee-C-CchhhhhHHHHHHHHhc
Q 021368 1 MVKKETEKISYFADGK-FDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAV-S-NDSEKLLPVFEEAAKSF 77 (313)
Q Consensus 1 ~~~~~~~~~~~y~~g~-~~~~~l~~fi~~~~~~~v~~lt~~~~~~~~~~~~~~~v~f~~~-~-~~c~~~~~~~~~~a~~~ 77 (313)
+||..|+++..| +|+ ++..+|.+||..++.|+|.++|.+++..++..+.+.+++++.. . ...+.+...+.++|.++
T Consensus 46 ~~k~~~~~~~~y-~~~~~~~~~l~~fI~~~~~P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~ 124 (184)
T PF13848_consen 46 VYKKFDEKPVVY-DGDKFTPEELKKFIKKNSFPLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKF 124 (184)
T ss_dssp EEECTTTSEEEE-SSSTTSHHHHHHHHHHHSSTSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCT
T ss_pred EeccCCCCceec-ccccCCHHHHHHHHHHhccccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhc
Confidence 468888999999 998 9999999999999999999999999999999887755555543 4 67899999999999999
Q ss_pred cCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCc-eeccCCCCCHHHHHHHHHH
Q 021368 78 KGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK-KHILDGELTLDKIKTFGED 139 (313)
Q Consensus 78 ~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~-~~~~~g~~~~~~i~~fi~~ 139 (313)
++++.|+++||+. .+++++.+|+.....|++++++..... .+.+.+..+.++|.+|+.+
T Consensus 125 ~~~~~f~~~d~~~---~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 125 KGKINFVYVDADD---FPRLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp TTTSEEEEEETTT---THHHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred CCeEEEEEeehHH---hHHHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 9999999999996 568999999997667999999855433 3445889999999999975
No 58
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.59 E-value=5.1e-15 Score=108.60 Aligned_cols=98 Identities=49% Similarity=0.933 Sum_probs=83.0
Q ss_pred EEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeC
Q 021368 164 IVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPA 241 (313)
Q Consensus 164 ~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~ 241 (313)
.++.++|.+.+.+ +++++|+||++||++|+.+.+.|.+++..++....+.++.+|++.+.. .++++.++|++++|++
T Consensus 2 ~l~~~~~~~~i~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 2 ELTDDNFDELVKD-SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred cccHHHHHHHHhC-CCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 3677888888754 459999999999999999999999999999633479999999998554 7999999999999988
Q ss_pred CCCCcCceeeccCcCHHHHHHHH
Q 021368 242 GNKSFDPINVDVDRTVVALYKFL 264 (313)
Q Consensus 242 g~~~~~~~~y~g~~~~~~l~~fi 264 (313)
+.. ...+|.|..+.+.|.+|+
T Consensus 81 ~~~--~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSK--EPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCc--ccccCCCCcCHHHHHhhC
Confidence 742 345899999999998885
No 59
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.59 E-value=6.8e-15 Score=108.84 Aligned_cols=99 Identities=19% Similarity=0.213 Sum_probs=87.8
Q ss_pred eEEeCCCcccccccCCC-ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEE
Q 021368 34 VTIFTRENAPSVFESPI-KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVL 111 (313)
Q Consensus 34 v~~lt~~~~~~~~~~~~-~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i 111 (313)
|.+++++++.+.+.... .++|+||++| ++|+++.|.|.+++.++.+.+.|+.+||++ +..+|++|||+++ |++
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~---~~~~~~~~~i~~~--P~~ 76 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADV---HQSLAQQYGVRGF--PTI 76 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcc---hHHHHHHCCCCcc--CEE
Confidence 56888999988764444 4788899999 999999999999999999999999999998 6699999999988 999
Q ss_pred EEEcCCCCceeccCCCCCHHHHHHHH
Q 021368 112 AYTGNDDAKKHILDGELTLDKIKTFG 137 (313)
Q Consensus 112 ~~~~~~~~~~~~~~g~~~~~~i~~fi 137 (313)
+++..+....+.|.|.++.++|.+|+
T Consensus 77 ~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 77 KVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred EEECCCCcceeecCCCCCHHHHHHHh
Confidence 99988766678899999999999996
No 60
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.3e-14 Score=106.69 Aligned_cols=85 Identities=29% Similarity=0.545 Sum_probs=71.9
Q ss_pred cCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeecc
Q 021368 176 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDV 253 (313)
Q Consensus 176 ~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g 253 (313)
..++.++|+|||+||++|+.+.|.+.++|.+|.+ +.|.++|++.+.. +.+++...||+.+|++|..+. .+.|
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~---v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~---~~vG 92 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD---VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVD---EVVG 92 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC---CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEE---EEec
Confidence 3468999999999999999999999999999875 8999999997333 789999999999999999875 7777
Q ss_pred CcCHHHHHHHHHhc
Q 021368 254 DRTVVALYKFLKKN 267 (313)
Q Consensus 254 ~~~~~~l~~fi~~~ 267 (313)
. +...|.+.|.++
T Consensus 93 a-~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 93 A-NKAELEKKIAKH 105 (106)
T ss_pred C-CHHHHHHHHHhc
Confidence 4 444677776654
No 61
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.56 E-value=2.6e-14 Score=107.30 Aligned_cols=98 Identities=23% Similarity=0.309 Sum_probs=80.8
Q ss_pred CCeEEEcC-cChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceE
Q 021368 160 GDVKIVVG-NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI 236 (313)
Q Consensus 160 ~~v~~l~~-~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i 236 (313)
+.+..++. +.|.+.+. ++++++|+||++||++|+.+.+.+.++++.+. .+.|+++|++.+.. +++++.++|++
T Consensus 4 g~v~~i~~~~~~~~~i~-~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~---~i~f~~Vd~~~~~~l~~~~~v~~vPt~ 79 (113)
T cd02989 4 GKYREVSDEKEFFEIVK-SSERVVCHFYHPEFFRCKIMDKHLEILAKKHL---ETKFIKVNAEKAPFLVEKLNIKVLPTV 79 (113)
T ss_pred CCeEEeCCHHHHHHHHh-CCCcEEEEEECCCCccHHHHHHHHHHHHHHcC---CCEEEEEEcccCHHHHHHCCCccCCEE
Confidence 45677777 88888874 56899999999999999999999999999875 48999999999875 78999999999
Q ss_pred EEEeCCCCCcCceeecc--------CcCHHHHHHHH
Q 021368 237 LFFPAGNKSFDPINVDV--------DRTVVALYKFL 264 (313)
Q Consensus 237 ~~~~~g~~~~~~~~y~g--------~~~~~~l~~fi 264 (313)
++|++|..+. ++.| ..+.+.+.+|+
T Consensus 80 l~fk~G~~v~---~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 80 ILFKNGKTVD---RIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EEEECCEEEE---EEECccccCCCCCCCHHHHHHHh
Confidence 9999998764 3333 34556666665
No 62
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.56 E-value=2.2e-14 Score=105.76 Aligned_cols=98 Identities=18% Similarity=0.146 Sum_probs=86.0
Q ss_pred ceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcccccchhhhhCCCCCCCcE
Q 021368 33 LVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEAPKV 110 (313)
Q Consensus 33 ~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~ 110 (313)
.|.+|+.++|++++.. .++|.||++| ++|+.+.|.|.+++..+.+ .+.|+.|||++ ++.+|++|+|.++ |+
T Consensus 2 ~v~~l~~~~f~~~~~~--~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~---~~~~~~~~~i~~~--Pt 74 (101)
T cd02994 2 NVVELTDSNWTLVLEG--EWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ---EPGLSGRFFVTAL--PT 74 (101)
T ss_pred ceEEcChhhHHHHhCC--CEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC---CHhHHHHcCCccc--CE
Confidence 4788999999998754 4789999999 9999999999999998875 59999999998 5699999999999 99
Q ss_pred EEEEcCCCCceeccCCCCCHHHHHHHHHH
Q 021368 111 LAYTGNDDAKKHILDGELTLDKIKTFGED 139 (313)
Q Consensus 111 i~~~~~~~~~~~~~~g~~~~~~i~~fi~~ 139 (313)
++++.+|. ...|.|.++.++|..|+.+
T Consensus 75 ~~~~~~g~--~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 75 IYHAKDGV--FRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred EEEeCCCC--EEEecCCCCHHHHHHHHhC
Confidence 99987764 4678999999999999864
No 63
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.4e-14 Score=110.48 Aligned_cols=105 Identities=18% Similarity=0.280 Sum_probs=92.4
Q ss_pred CceEEeCCCcccc-cccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCc
Q 021368 32 PLVTIFTRENAPS-VFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK 109 (313)
Q Consensus 32 ~~v~~lt~~~~~~-~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P 109 (313)
..+..++..+|++ ++....+++|.|+++| ++|+.+.|.+++++.++.|++.|+.||.++ +.+++.+|+|... |
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~---~~ela~~Y~I~av--P 117 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDE---HPELAEDYEISAV--P 117 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccc---ccchHhhcceeee--e
Confidence 3666777777777 5567778888899999 999999999999999999999999999999 6799999999999 9
Q ss_pred EEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368 110 VLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE 142 (313)
Q Consensus 110 ~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~ 142 (313)
++++|.+|. ..-.+.|..+.+.|..+|++++.
T Consensus 118 tvlvfknGe-~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 118 TVLVFKNGE-KVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EEEEEECCE-EeeeecccCCHHHHHHHHHHHhc
Confidence 999999886 34567899999999999999864
No 64
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.55 E-value=2.7e-14 Score=104.47 Aligned_cols=91 Identities=19% Similarity=0.403 Sum_probs=79.8
Q ss_pred hHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcC
Q 021368 170 FDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFD 247 (313)
Q Consensus 170 f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~ 247 (313)
++..+...+++++|+||++||+.|+.+.+.+.++++.+.+ ++.++.+|++.... .++++.++|++++|++|+.+.
T Consensus 5 ~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~--~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~- 81 (97)
T cd02949 5 LRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG--AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVK- 81 (97)
T ss_pred HHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC--ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEE-
Confidence 4566777889999999999999999999999999999875 69999999987765 789999999999999887664
Q ss_pred ceeeccCcCHHHHHHHHH
Q 021368 248 PINVDVDRTVVALYKFLK 265 (313)
Q Consensus 248 ~~~y~g~~~~~~l~~fi~ 265 (313)
.+.|..+.+.|.+||+
T Consensus 82 --~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 82 --EISGVKMKSEYREFIE 97 (97)
T ss_pred --EEeCCccHHHHHHhhC
Confidence 8889888898988873
No 65
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.54 E-value=3.9e-14 Score=114.44 Aligned_cols=106 Identities=21% Similarity=0.305 Sum_probs=87.3
Q ss_pred CCCeEEEcC-cChHHHhhcCC--CcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-ccCCCCcCc
Q 021368 159 DGDVKIVVG-NNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFP 234 (313)
Q Consensus 159 ~~~v~~l~~-~~f~~~l~~~~--k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-~~~~v~~~P 234 (313)
.+.|..++. ++|.+.+...+ .+++|+||++||++|+.+.+.|..+|..+. .+.|++||++.... ..|++.++|
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~---~vkF~kVd~d~~~l~~~f~v~~vP 137 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP---AVKFCKIRASATGASDEFDTDALP 137 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC---CeEEEEEeccchhhHHhCCCCCCC
Confidence 577889999 99999986544 489999999999999999999999999875 49999999997633 789999999
Q ss_pred eEEEEeCCCCCcCceeec---c-CcCHHHHHHHHHhc
Q 021368 235 TILFFPAGNKSFDPINVD---V-DRTVVALYKFLKKN 267 (313)
Q Consensus 235 ~i~~~~~g~~~~~~~~y~---g-~~~~~~l~~fi~~~ 267 (313)
|+++|++|..+.+.+.+. | ..+.+.|..||.++
T Consensus 138 Tlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 138 ALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred EEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 999999998875333333 1 45678888888764
No 66
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.53 E-value=4.1e-14 Score=108.91 Aligned_cols=98 Identities=15% Similarity=0.159 Sum_probs=80.0
Q ss_pred cCcChHHHhh-cCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEE-EEeC
Q 021368 166 VGNNFDEIVL-DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL-FFPA 241 (313)
Q Consensus 166 ~~~~f~~~l~-~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~-~~~~ 241 (313)
+..+|++.+. ..+++++|.||++||++|+.+.|.+.+++..+.+ .+.|+.+|++.+.. ..|+|.+.|+++ +|++
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~--~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~ 87 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKN--FAVIYLVDITEVPDFNTMYELYDPCTVMFFFRN 87 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC--ceEEEEEECCCCHHHHHHcCccCCCcEEEEEEC
Confidence 3577888886 4478999999999999999999999999999876 58889999999876 789999776655 8899
Q ss_pred CC-CCcCceeecc--------CcCHHHHHHHHHhcC
Q 021368 242 GN-KSFDPINVDV--------DRTVVALYKFLKKNA 268 (313)
Q Consensus 242 g~-~~~~~~~y~g--------~~~~~~l~~fi~~~~ 268 (313)
|. .+. +..| ..+.+.|+.-+....
T Consensus 88 g~~~vd---~~tG~~~k~~~~~~~k~~l~~~i~~~~ 120 (142)
T PLN00410 88 KHIMID---LGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
T ss_pred CeEEEE---EecccccccccccCCHHHHHHHHHHHH
Confidence 98 554 6666 456777777776653
No 67
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.53 E-value=2.7e-14 Score=105.43 Aligned_cols=97 Identities=22% Similarity=0.311 Sum_probs=85.6
Q ss_pred eEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccC---eEEEEEEeCCCcccccchhhhhCCCCCCCc
Q 021368 34 VTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITGEAPK 109 (313)
Q Consensus 34 v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~---~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P 109 (313)
+.++++++|+..+..+ .++|.||++| ++|+.+.|.|.+++.++.+ .+.|+.|||+. +..+|++|+|.++ |
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~--P 75 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ---HRELCSEFQVRGY--P 75 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC---ChhhHhhcCCCcC--C
Confidence 6788999999988766 5888899999 9999999999999999987 79999999998 5699999999988 9
Q ss_pred EEEEEcCCCCceeccCCCCCHHHHHHHH
Q 021368 110 VLAYTGNDDAKKHILDGELTLDKIKTFG 137 (313)
Q Consensus 110 ~i~~~~~~~~~~~~~~g~~~~~~i~~fi 137 (313)
+++++..|. ....+.|.++.+.|.+||
T Consensus 76 t~~~~~~g~-~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 76 TLLLFKDGE-KVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EEEEEeCCC-eeeEeeCCCCHHHHHhhC
Confidence 999997765 456789999999998875
No 68
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.53 E-value=3.1e-14 Score=106.43 Aligned_cols=101 Identities=13% Similarity=0.189 Sum_probs=86.5
Q ss_pred ceEEeCCCccccccc---CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCCcccccchhh-hhCCCCC
Q 021368 33 LVTIFTRENAPSVFE---SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDVGKPVSE-YFGITGE 106 (313)
Q Consensus 33 ~v~~lt~~~~~~~~~---~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~~~~~~l~~-~~~v~~~ 106 (313)
.|.+++.++|+.++. .+.+++|.||++| ++|+++.|.|.+++..+.+. +.|+.|||+.. ...+|+ .++|+++
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~--~~~~~~~~~~v~~~ 79 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE--QREFAKEELQLKSF 79 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc--chhhHHhhcCCCcC
Confidence 478899999998873 4568899999999 99999999999999999974 99999999873 247786 5999999
Q ss_pred CCcEEEEEcCCCCceeccCCC-CCHHHHHHHH
Q 021368 107 APKVLAYTGNDDAKKHILDGE-LTLDKIKTFG 137 (313)
Q Consensus 107 ~~P~i~~~~~~~~~~~~~~g~-~~~~~i~~fi 137 (313)
|++++|..+....+.|.|. ++.++|..|+
T Consensus 80 --Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 80 --PTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred --CEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 9999998876667889985 8999999885
No 69
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=6e-14 Score=127.31 Aligned_cols=236 Identities=15% Similarity=0.130 Sum_probs=154.7
Q ss_pred CCceEEeCCCcccccccCCC-ccEEEEEeeC-CchhhhhHHHHHHHHhccC---eEEEEEEeCCCcccccchhhhhCCCC
Q 021368 31 LPLVTIFTRENAPSVFESPI-KNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITG 105 (313)
Q Consensus 31 ~~~v~~lt~~~~~~~~~~~~-~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~---~v~f~~vd~~~~~~~~~l~~~~~v~~ 105 (313)
.+.|.+|+.++|+..+-.+. .++|.||++| |+|++++|.|+++|..+.. .+.++.|||.++. |..+|+.|+|+.
T Consensus 38 ~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~-N~~lCRef~V~~ 116 (606)
T KOG1731|consen 38 DDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEE-NVKLCREFSVSG 116 (606)
T ss_pred CCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchh-hhhhHhhcCCCC
Confidence 36889999999999665444 7888999999 9999999999999998875 7999999999988 999999999999
Q ss_pred CCCcEEEEEcCCCCc---eeccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCC-CCCeEEE-cCcChHHHhhcCCCc
Q 021368 106 EAPKVLAYTGNDDAK---KHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETN-DGDVKIV-VGNNFDEIVLDESKD 180 (313)
Q Consensus 106 ~~~P~i~~~~~~~~~---~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~-~~~v~~l-~~~~f~~~l~~~~k~ 180 (313)
| |++.||..+..+ .-.+.|.....+|..++.+.+.... .+ +.-|.++ -.++..- +-..+++.+.+....
T Consensus 117 ~--Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~---~~-~~~~~WP~f~pl~~~~~~~~l~~~~~~~~~y 190 (606)
T KOG1731|consen 117 Y--PTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEED---AQ-NRYPSWPNFDPLKDTTTLEELDEGISTTANY 190 (606)
T ss_pred C--ceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHH---hh-hcCCCCCCCCCCCCcchHHHHhcccccccce
Confidence 9 999999876432 2234566777888888776654211 11 1222222 1122111 112222222222334
Q ss_pred EEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEE-EeCCCcccccCCCCcCceEEEEeCCCCCcCceeeccCcCHHH
Q 021368 181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK-MDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVA 259 (313)
Q Consensus 181 ~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~-vd~~~~~~~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~ 259 (313)
+.|.|-... ..-.+..+-..+... .+.+.. .|......-.+++...|..++|++|.... .+....+.+.
T Consensus 191 vAiv~e~~~------s~lg~~~~l~~l~~~-~v~vr~~~d~q~~~~~~l~~~~~~~~llfrnG~~q~---l~~~~~s~~~ 260 (606)
T KOG1731|consen 191 VAIVFETEP------SDLGWANLLNDLPSK-QVGVRARLDTQNFPLFGLKPDNFPLALLFRNGEQQP---LWPSSSSRSA 260 (606)
T ss_pred eEEEEecCC------cccHHHHHHhhccCC-CcceEEEecchhccccccCCCCchhhhhhcCCcccc---cccccccHHH
Confidence 555552221 111334444444332 233333 34444444458999999999999998753 3444456667
Q ss_pred HHHHHHhcCCCCccccCCCCCCCC
Q 021368 260 LYKFLKKNASIPFKIQKPTSAPKT 283 (313)
Q Consensus 260 l~~fi~~~~~~~~~~~~~~~~~~~ 283 (313)
..+-|.+.++.+.....|+-.+.+
T Consensus 261 y~~~I~~~lg~~~~a~~pt~~p~~ 284 (606)
T KOG1731|consen 261 YVKKIDDLLGDKNEASGPTLHPIT 284 (606)
T ss_pred HHHHHHHHhcCccccCCCCcCccc
Confidence 888888888877777777666655
No 70
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.52 E-value=4.4e-14 Score=104.14 Aligned_cols=98 Identities=20% Similarity=0.317 Sum_probs=87.9
Q ss_pred eCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccC--eEEEEEEeCCCcccccchhhhhCCCCCCCcEEEE
Q 021368 37 FTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG--KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAY 113 (313)
Q Consensus 37 lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~--~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~ 113 (313)
|++++|+..+..+..++|+||++| +.|+.+.+.|.+++..+++ .+.|+.+||+. ++.+|++|+|.++ |++++
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~~i~~~--P~~~~ 75 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA---EKDLASRFGVSGF--PTIKF 75 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc---hHHHHHhCCCCcC--CEEEE
Confidence 467788888777778899999999 9999999999999999997 69999999998 6699999999988 99999
Q ss_pred EcCCCCceeccCCCCCHHHHHHHHHHH
Q 021368 114 TGNDDAKKHILDGELTLDKIKTFGEDF 140 (313)
Q Consensus 114 ~~~~~~~~~~~~g~~~~~~i~~fi~~~ 140 (313)
+..++. .+.|.|..+.+.|..|++++
T Consensus 76 ~~~~~~-~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 76 FPKGKK-PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred ecCCCc-ceeecCCCCHHHHHHHHHhc
Confidence 988765 77899999999999999875
No 71
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.52 E-value=4.6e-14 Score=103.18 Aligned_cols=92 Identities=23% Similarity=0.433 Sum_probs=75.6
Q ss_pred CcChHHHhhcC-CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCC
Q 021368 167 GNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGN 243 (313)
Q Consensus 167 ~~~f~~~l~~~-~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~ 243 (313)
.++|++.+... +++++|+||++||++|+.+.+.+.+++..+.. .+.++.+|++.... .++++.++|++++|++|+
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~--~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 79 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP--SVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT 79 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC--ceEEEEEccccCHHHHHhcCCccccEEEEEECCE
Confidence 35677777544 58999999999999999999999999999733 79999999987765 789999999999999887
Q ss_pred CCcCceeeccCcCHHHHHHHH
Q 021368 244 KSFDPINVDVDRTVVALYKFL 264 (313)
Q Consensus 244 ~~~~~~~y~g~~~~~~l~~fi 264 (313)
.+. .+.| .+.+.|.+.|
T Consensus 80 ~~~---~~~g-~~~~~l~~~~ 96 (97)
T cd02984 80 IVD---RVSG-ADPKELAKKV 96 (97)
T ss_pred EEE---EEeC-CCHHHHHHhh
Confidence 653 5666 4567677655
No 72
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.50 E-value=1.1e-13 Score=102.63 Aligned_cols=91 Identities=22% Similarity=0.369 Sum_probs=75.0
Q ss_pred cChHHHhhcCCCcEEEEEeCCCCccchhhhHHH---HHHHHHhcCCCcEEEEEEeCCCccc------ccCCCCcCceEEE
Q 021368 168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPTILF 238 (313)
Q Consensus 168 ~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~---~~la~~~~~~~~v~~~~vd~~~~~~------~~~~v~~~P~i~~ 238 (313)
+.|.+.+ ..+++++|+||++||++|+.+.+.+ .+++..+.+ ++.++.+|++.+.. .++++.++|++++
T Consensus 2 ~~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 2 AALAQAL-AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK--DVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred HHHHHHH-HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC--CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 3566655 5679999999999999999999888 678888875 69999999986432 5899999999999
Q ss_pred EeC--CCCCcCceeeccCcCHHHHHHHH
Q 021368 239 FPA--GNKSFDPINVDVDRTVVALYKFL 264 (313)
Q Consensus 239 ~~~--g~~~~~~~~y~g~~~~~~l~~fi 264 (313)
|.. |... .++.|..+.+.|.++|
T Consensus 79 ~~~~~g~~~---~~~~G~~~~~~l~~~l 103 (104)
T cd02953 79 YGPGGEPEP---LRLPGFLTADEFLEAL 103 (104)
T ss_pred ECCCCCCCC---cccccccCHHHHHHHh
Confidence 984 5543 4889999999998887
No 73
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.49 E-value=1.3e-13 Score=112.93 Aligned_cols=105 Identities=19% Similarity=0.220 Sum_probs=85.8
Q ss_pred CCCeEEEcCcChHHHhhcCC--CcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceE
Q 021368 159 DGDVKIVVGNNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTI 236 (313)
Q Consensus 159 ~~~v~~l~~~~f~~~l~~~~--k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i 236 (313)
.+.|..++..+|...+...+ .+++|.||++||++|+.+.+.|..+|.++. .+.|+++|++.. ...|++.++||+
T Consensus 81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~---~vkFvkI~ad~~-~~~~~i~~lPTl 156 (192)
T cd02988 81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP---DTKFVKIISTQC-IPNYPDKNLPTI 156 (192)
T ss_pred CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC---CCEEEEEEhHHh-HhhCCCCCCCEE
Confidence 57899999999998876554 489999999999999999999999999985 489999998754 478999999999
Q ss_pred EEEeCCCCCcCceeec---c-CcCHHHHHHHHHhc
Q 021368 237 LFFPAGNKSFDPINVD---V-DRTVVALYKFLKKN 267 (313)
Q Consensus 237 ~~~~~g~~~~~~~~y~---g-~~~~~~l~~fi~~~ 267 (313)
++|++|..+.+.+.+. | ..+.+.|..+|.+.
T Consensus 157 liyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~~ 191 (192)
T cd02988 157 LVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQV 191 (192)
T ss_pred EEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHhc
Confidence 9999999875322222 2 45677888777653
No 74
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.49 E-value=1.8e-13 Score=101.41 Aligned_cols=100 Identities=19% Similarity=0.311 Sum_probs=86.6
Q ss_pred eEEeCCCcccccccCCC-ccEEEEEeeC-CchhhhhHHHHHHHHhcc--CeEEEEEEeCCCcccccchhhhhCCCCCCCc
Q 021368 34 VTIFTRENAPSVFESPI-KNQLLLFAVS-NDSEKLLPVFEEAAKSFK--GKLIFVYVQMDNEDVGKPVSEYFGITGEAPK 109 (313)
Q Consensus 34 v~~lt~~~~~~~~~~~~-~~~v~f~~~~-~~c~~~~~~~~~~a~~~~--~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P 109 (313)
+.++++++++..+.... .++++||++| ++|+++.|.|.+++..+. +.+.|+.+||+.. +..+|++++|.++ |
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~~i~~~--P 77 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA--NKDLAKKYGVSGF--P 77 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc--chhhHHhCCCCCc--C
Confidence 56888999998776555 6788899999 999999999999999997 4699999999982 3499999999998 9
Q ss_pred EEEEEcCCCCceeccCCCCCHHHHHHHH
Q 021368 110 VLAYTGNDDAKKHILDGELTLDKIKTFG 137 (313)
Q Consensus 110 ~i~~~~~~~~~~~~~~g~~~~~~i~~fi 137 (313)
+++++..++...+.|.|.++.+.|.+|+
T Consensus 78 ~~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 78 TLKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EEEEEeCCCCCccccCCccCHHHHHhhC
Confidence 9999987765677889999999999885
No 75
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.48 E-value=9.3e-14 Score=102.07 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=67.2
Q ss_pred cChHHHhhcC-CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCC
Q 021368 168 NNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNK 244 (313)
Q Consensus 168 ~~f~~~l~~~-~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~ 244 (313)
+.+++.+.+. +++++|.|+++||++|+.+.|.+.++|.++++ .+.|+.+|++.... +.|++...|++++|++|++
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~--~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh 80 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK--MASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQH 80 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC--ceEEEEEeccccHHHHHhcCceeCcEEEEEECCcE
Confidence 4566767544 79999999999999999999999999999965 49999999999877 7899999999999999887
Q ss_pred C
Q 021368 245 S 245 (313)
Q Consensus 245 ~ 245 (313)
+
T Consensus 81 ~ 81 (114)
T cd02986 81 M 81 (114)
T ss_pred E
Confidence 5
No 76
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.48 E-value=2.7e-12 Score=105.11 Aligned_cols=172 Identities=22% Similarity=0.301 Sum_probs=138.4
Q ss_pred hhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCC-CCHHHHHHHHHHHhcC
Q 021368 65 KLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE-LTLDKIKTFGEDFLEG 143 (313)
Q Consensus 65 ~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~-~~~~~i~~fi~~~~~~ 143 (313)
.....|.++|..+.+.+.|+.+.- ..+++.+|+. .|++++++.+...+..|.|. .+.+.|.+||....-
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~~------~~~~~~~~~~---~p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~- 76 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTFN------EELAKKYGIK---EPTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSF- 76 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE-------HHHHHHCTCS---SSEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSS-
T ss_pred HHHHHHHHHHHhCcCCcEEEEEcH------HHHHHHhCCC---CCcEEEeccCCCCceecccccCCHHHHHHHHHHhcc-
Confidence 567889999999998899999882 3789999995 38888898866667888997 899999999999754
Q ss_pred CCCCCCCCCCCCCCCCCCeEEEcCcChHHHhhcCCCc-EEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368 144 KLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 222 (313)
Q Consensus 144 ~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~l~~~~k~-~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~ 222 (313)
+.|..++..++..+.. .+.+ ++++|+.........+...+..+|..+++ .+.|+.+|+..
T Consensus 77 ----------------P~v~~~t~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~~f~~~d~~~ 137 (184)
T PF13848_consen 77 ----------------PLVPELTPENFEKLFS-SPKPPVLILFDNKDNESTEAFKKELQDIAKKFKG--KINFVYVDADD 137 (184)
T ss_dssp ----------------TSCEEESTTHHHHHHS-TSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTT--TSEEEEEETTT
T ss_pred ----------------ccccccchhhHHHHhc-CCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCC--eEEEEEeehHH
Confidence 5688999999999774 4544 88888877777888999999999999987 69999999996
Q ss_pred ccc--ccCCCC--cCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHh
Q 021368 223 NEH--HRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK 266 (313)
Q Consensus 223 ~~~--~~~~v~--~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~ 266 (313)
... ..+++. .+|+++++...... ....+.|..+.+.|.+|+++
T Consensus 138 ~~~~~~~~~i~~~~~P~~vi~~~~~~~-~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 138 FPRLLKYFGIDEDDLPALVIFDSNKGK-YYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp THHHHHHTTTTTSSSSEEEEEETTTSE-EEE--SSCGCHHHHHHHHHH
T ss_pred hHHHHHHcCCCCccCCEEEEEECCCCc-EEcCCCCCCCHHHHHHHhcC
Confidence 554 677777 89999999744332 12234789999999999974
No 77
>PRK09381 trxA thioredoxin; Provisional
Probab=99.48 E-value=3.1e-13 Score=101.02 Aligned_cols=105 Identities=19% Similarity=0.279 Sum_probs=90.4
Q ss_pred CCceEEeCCCcccc-cccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCC
Q 021368 31 LPLVTIFTRENAPS-VFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAP 108 (313)
Q Consensus 31 ~~~v~~lt~~~~~~-~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~ 108 (313)
.+.+.++++++|.+ +...+.+++|.||++| ++|+.+.|.|++++.++.+.+.|+.+||+. ++.++++|+|..+
T Consensus 2 ~~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~-- 76 (109)
T PRK09381 2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ---NPGTAPKYGIRGI-- 76 (109)
T ss_pred CCcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC---ChhHHHhCCCCcC--
Confidence 45678899999886 4555667888999999 999999999999999999889999999998 5689999999988
Q ss_pred cEEEEEcCCCCceeccCCCCCHHHHHHHHHHHh
Q 021368 109 KVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL 141 (313)
Q Consensus 109 P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~ 141 (313)
|+++++..|. ....+.|..+.+.|..|+...+
T Consensus 77 Pt~~~~~~G~-~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 77 PTLLLFKNGE-VAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred CEEEEEeCCe-EEEEecCCCCHHHHHHHHHHhc
Confidence 9999997664 4456788899999999998865
No 78
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.48 E-value=1.3e-13 Score=115.13 Aligned_cols=106 Identities=15% Similarity=0.228 Sum_probs=91.5
Q ss_pred CCceEEeCCCcccccccC-----CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCC
Q 021368 31 LPLVTIFTRENAPSVFES-----PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGIT 104 (313)
Q Consensus 31 ~~~v~~lt~~~~~~~~~~-----~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~ 104 (313)
.+.+.+|++++|++.+.. ..+++|.||++| ++|+.+.|.|++++.++++.+.|+.+||+. ++.+|++|+|+
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~---~~~l~~~~~I~ 105 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATR---ALNLAKRFAIK 105 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcc---cHHHHHHcCCC
Confidence 356899999999987643 357899999999 999999999999999999999999999998 66999999999
Q ss_pred CCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368 105 GEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE 142 (313)
Q Consensus 105 ~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~ 142 (313)
++ |++++|..|... ..+.|.++.++|.+|+.+.+.
T Consensus 106 ~~--PTl~~f~~G~~v-~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 106 GY--PTLLLFDKGKMY-QYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred cC--CEEEEEECCEEE-EeeCCCCCHHHHHHHHHHHHH
Confidence 99 999999876522 224678999999999998864
No 79
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.48 E-value=2.4e-13 Score=102.07 Aligned_cols=90 Identities=12% Similarity=0.182 Sum_probs=76.5
Q ss_pred cCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeecc
Q 021368 176 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDV 253 (313)
Q Consensus 176 ~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g 253 (313)
.++..++|+||++||++|+.+.+.+.+++..+ . .+.+..+|.+.+.. ..|++.++|++++|++|... ..++|.|
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~--~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~-~~~~~~G 95 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D--KLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKD-GGIRYYG 95 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C--ceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeec-ceEEEEe
Confidence 34667899999999999999999999999876 3 58899999998766 78999999999999987665 3457999
Q ss_pred CcCHHHHHHHHHhcCC
Q 021368 254 DRTVVALYKFLKKNAS 269 (313)
Q Consensus 254 ~~~~~~l~~fi~~~~~ 269 (313)
....++|.+||...+.
T Consensus 96 ~~~~~el~~~i~~i~~ 111 (113)
T cd02975 96 LPAGYEFASLIEDIVR 111 (113)
T ss_pred cCchHHHHHHHHHHHh
Confidence 8888999999987653
No 80
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.47 E-value=2.5e-13 Score=100.52 Aligned_cols=98 Identities=19% Similarity=0.313 Sum_probs=84.8
Q ss_pred eEEeCCCcccccccC-CCccEEEEEeeC-CchhhhhHHHHHHHHhccC--eEEEEEEeCCCcccccchhhhhCCCCCCCc
Q 021368 34 VTIFTRENAPSVFES-PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG--KLIFVYVQMDNEDVGKPVSEYFGITGEAPK 109 (313)
Q Consensus 34 v~~lt~~~~~~~~~~-~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~--~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P 109 (313)
|..|+..+|++.+.. +..++|.||++| ++|+.+.|.|.++++.+.+ .+.|+.+||+. + .++..+++.++ |
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~---~-~~~~~~~~~~~--P 75 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATA---N-DVPSEFVVDGF--P 75 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcc---h-hhhhhccCCCC--C
Confidence 678999999987644 367788899999 9999999999999999987 59999999987 3 68889999888 9
Q ss_pred EEEEEcCCC-CceeccCCCCCHHHHHHHH
Q 021368 110 VLAYTGNDD-AKKHILDGELTLDKIKTFG 137 (313)
Q Consensus 110 ~i~~~~~~~-~~~~~~~g~~~~~~i~~fi 137 (313)
+++++.++. .....|.|..+.+.|.+||
T Consensus 76 t~~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 76 TILFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EEEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 999998776 4567789999999999885
No 81
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.47 E-value=5.9e-14 Score=117.54 Aligned_cols=94 Identities=26% Similarity=0.555 Sum_probs=82.8
Q ss_pred CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCC-CcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeecc
Q 021368 177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDV 253 (313)
Q Consensus 177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g 253 (313)
+...|+|.||+|||++|+.+.|+|.+++..+++. .-+.++++||+.... .+++|.++||+.+|+++..+ .|.|
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~----dYRG 117 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAI----DYRG 117 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeee----ecCC
Confidence 3567999999999999999999999999999875 369999999999887 79999999999999988776 8999
Q ss_pred CcCHHHHHHHHHhcCCCCccc
Q 021368 254 DRTVVALYKFLKKNASIPFKI 274 (313)
Q Consensus 254 ~~~~~~l~~fi~~~~~~~~~~ 274 (313)
+++.+.|+.|...-.+.-++.
T Consensus 118 ~R~Kd~iieFAhR~a~aiI~p 138 (468)
T KOG4277|consen 118 GREKDAIIEFAHRCAAAIIEP 138 (468)
T ss_pred CccHHHHHHHHHhcccceeee
Confidence 999999999998876544433
No 82
>PTZ00051 thioredoxin; Provisional
Probab=99.47 E-value=2.6e-13 Score=99.39 Aligned_cols=91 Identities=25% Similarity=0.496 Sum_probs=73.2
Q ss_pred eEEEcC-cChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEE
Q 021368 162 VKIVVG-NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF 238 (313)
Q Consensus 162 v~~l~~-~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~ 238 (313)
|..++. +++.+.+ +.++.++|+||++||++|+.+.+.+.+++..+. ++.++.+|++.+.. .+|++.++|++++
T Consensus 2 v~~i~~~~~~~~~~-~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 77 (98)
T PTZ00051 2 VHIVTSQAEFESTL-SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT---KMVFVKVDVDELSEVAEKENITSMPTFKV 77 (98)
T ss_pred eEEecCHHHHHHHH-hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC---CcEEEEEECcchHHHHHHCCCceeeEEEE
Confidence 344544 4566654 678899999999999999999999999999764 48999999987654 7899999999999
Q ss_pred EeCCCCCcCceeeccCcCHHHH
Q 021368 239 FPAGNKSFDPINVDVDRTVVAL 260 (313)
Q Consensus 239 ~~~g~~~~~~~~y~g~~~~~~l 260 (313)
|++|+.+. .+.|. ..+.|
T Consensus 78 ~~~g~~~~---~~~G~-~~~~~ 95 (98)
T PTZ00051 78 FKNGSVVD---TLLGA-NDEAL 95 (98)
T ss_pred EeCCeEEE---EEeCC-CHHHh
Confidence 99998765 77774 44444
No 83
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.46 E-value=8.5e-14 Score=116.79 Aligned_cols=106 Identities=25% Similarity=0.488 Sum_probs=92.6
Q ss_pred cCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCC---CcEEEEEEeCCCccc--ccCCCCcCceEEEEe
Q 021368 166 VGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV---DSIVIAKMDGTTNEH--HRAKSDGFPTILFFP 240 (313)
Q Consensus 166 ~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~---~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~ 240 (313)
+..+++..+ +....++|.|||.||+..+.++|+|.+.|.+++.. ..+.++.|||+.+.. .+|.|+.|||+-+|+
T Consensus 2 t~~N~~~il-~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 2 TSENIDSIL-DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred ccccHHHhh-ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 456777766 56889999999999999999999999999988643 379999999999887 899999999999999
Q ss_pred CCCCCcCceeeccCcCHHHHHHHHHhcCCCCccc
Q 021368 241 AGNKSFDPINVDVDRTVVALYKFLKKNASIPFKI 274 (313)
Q Consensus 241 ~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~~~ 274 (313)
+|.... ..|-|.++++.|.+||++.++.++.-
T Consensus 81 nG~~~~--rEYRg~RsVeaL~efi~kq~s~~i~E 112 (375)
T KOG0912|consen 81 NGEMMK--REYRGQRSVEALIEFIEKQLSDPINE 112 (375)
T ss_pred ccchhh--hhhccchhHHHHHHHHHHHhccHHHH
Confidence 998753 38999999999999999998876543
No 84
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.45 E-value=3.7e-13 Score=99.59 Aligned_cols=100 Identities=22% Similarity=0.325 Sum_probs=87.8
Q ss_pred eEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhcc--CeEEEEEEeCCCcccccchhhhhCCCCCCCcE
Q 021368 34 VTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK--GKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV 110 (313)
Q Consensus 34 v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~--~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~ 110 (313)
+..+++.+|+..+..+..++|.||++| ++|+.+.|.+.+++..+. +.+.|+.+||+... +..+++++||+++ |+
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~~i~~~--Pt 78 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPE-HDALKEEYNVKGF--PT 78 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCc-cHHHHHhCCCccc--cE
Confidence 678888999998888888889999999 999999999999999998 56999999999854 6699999999998 99
Q ss_pred EEEEcCCCCceeccCCCCCHHHHHHHH
Q 021368 111 LAYTGNDDAKKHILDGELTLDKIKTFG 137 (313)
Q Consensus 111 i~~~~~~~~~~~~~~g~~~~~~i~~fi 137 (313)
++++++|. ....+.|..+.+.+.+|+
T Consensus 79 ~~~~~~g~-~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 79 FKYFENGK-FVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEEEeCCC-eeEEeCCCCCHHHHHhhC
Confidence 99998765 456789999999998875
No 85
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.44 E-value=2.9e-13 Score=99.35 Aligned_cols=82 Identities=16% Similarity=0.226 Sum_probs=73.3
Q ss_pred CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCC-CcccccchhhhhCCCCCCCcEEEEEcCCCCceeccC
Q 021368 48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMD-NEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILD 125 (313)
Q Consensus 48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~-~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~ 125 (313)
+++.++|.||++| ++|+.+.|.|+++++.+.+ +.|+.||++ + ++.++++|+|.++ ||+++|+++ ....|.
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~---~~~l~~~~~V~~~--PT~~lf~~g--~~~~~~ 88 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSI---KPSLLSRYGVVGF--PTILLFNST--PRVRYN 88 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCC---CHHHHHhcCCeec--CEEEEEcCC--ceeEec
Confidence 4567888999999 9999999999999999987 889999998 5 5699999999999 999999877 467789
Q ss_pred CCCCHHHHHHHH
Q 021368 126 GELTLDKIKTFG 137 (313)
Q Consensus 126 g~~~~~~i~~fi 137 (313)
|.++.++|.+|+
T Consensus 89 G~~~~~~l~~f~ 100 (100)
T cd02999 89 GTRTLDSLAAFY 100 (100)
T ss_pred CCCCHHHHHhhC
Confidence 999999999985
No 86
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=5.7e-13 Score=108.95 Aligned_cols=101 Identities=27% Similarity=0.456 Sum_probs=84.7
Q ss_pred eEEEc-CcChHHHhh-cCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEE
Q 021368 162 VKIVV-GNNFDEIVL-DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL 237 (313)
Q Consensus 162 v~~l~-~~~f~~~l~-~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~ 237 (313)
|..++ +.+|+..+. ...+.++|.|+++||++|+...|+|..++++|.. ..|.++|++.... ..++|...||++
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~---aVFlkVdVd~c~~taa~~gV~amPTFi 79 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG---AVFLKVDVDECRGTAATNGVNAMPTFI 79 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc---cEEEEEeHHHhhchhhhcCcccCceEE
Confidence 34443 456777663 3458999999999999999999999999999964 7999999998766 688999999999
Q ss_pred EEeCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368 238 FFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 269 (313)
Q Consensus 238 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~ 269 (313)
+|.+|.+++ .+.| .+...|.+-+.++++
T Consensus 80 ff~ng~kid---~~qG-Ad~~gLe~kv~~~~s 107 (288)
T KOG0908|consen 80 FFRNGVKID---QIQG-ADASGLEEKVAKYAS 107 (288)
T ss_pred EEecCeEee---eecC-CCHHHHHHHHHHHhc
Confidence 999999875 7877 588889999988875
No 87
>PRK10996 thioredoxin 2; Provisional
Probab=99.42 E-value=8.1e-13 Score=103.03 Aligned_cols=104 Identities=18% Similarity=0.242 Sum_probs=91.1
Q ss_pred CCceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCc
Q 021368 31 LPLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK 109 (313)
Q Consensus 31 ~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P 109 (313)
...+..++..+|+.++..+..++|.||++| ++|+.+.|.|.+++.++.+.+.|+.||+++ ++.++++|+|.++ |
T Consensus 34 ~~~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~---~~~l~~~~~V~~~--P 108 (139)
T PRK10996 34 DGEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEA---ERELSARFRIRSI--P 108 (139)
T ss_pred CCCCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCC---CHHHHHhcCCCcc--C
Confidence 335667888899998888888899999999 999999999999999999889999999988 6699999999999 9
Q ss_pred EEEEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021368 110 VLAYTGNDDAKKHILDGELTLDKIKTFGEDF 140 (313)
Q Consensus 110 ~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~ 140 (313)
++++|++|+ ....+.|..+.+.|.+|+.+.
T Consensus 109 tlii~~~G~-~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 109 TIMIFKNGQ-VVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EEEEEECCE-EEEEEcCCCCHHHHHHHHHHh
Confidence 999998664 344568899999999999875
No 88
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.42 E-value=4.2e-13 Score=98.33 Aligned_cols=97 Identities=19% Similarity=0.299 Sum_probs=85.2
Q ss_pred EeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhc--cCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEE
Q 021368 36 IFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSF--KGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLA 112 (313)
Q Consensus 36 ~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~--~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~ 112 (313)
+++.++|.+.+.++..++|+||++| +.|+.+.+.|.+++..+ .+.+.|+.+||+. +..+|++++|+++ |+++
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~i~~~--Pt~~ 76 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA---NNDLCSEYGVRGY--PTIK 76 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc---hHHHHHhCCCCCC--CEEE
Confidence 4677788888888778899999999 99999999999999999 5779999999998 6799999999988 9999
Q ss_pred EEcCCCCceeccCCCCCHHHHHHHH
Q 021368 113 YTGNDDAKKHILDGELTLDKIKTFG 137 (313)
Q Consensus 113 ~~~~~~~~~~~~~g~~~~~~i~~fi 137 (313)
++..++.....|.|..+.+.|.+|+
T Consensus 77 ~~~~~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 77 LFPNGSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred EEcCCCcccccCCCCcCHHHHHhhC
Confidence 9987744566788999999998874
No 89
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.41 E-value=1.3e-12 Score=95.35 Aligned_cols=92 Identities=18% Similarity=0.344 Sum_probs=77.4
Q ss_pred cccccc-cC-CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCC
Q 021368 41 NAPSVF-ES-PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGND 117 (313)
Q Consensus 41 ~~~~~~-~~-~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~ 117 (313)
+|++.+ .. +..++|.||++| ++|+.+.|.|.+++..+.+.+.|+.|||+. +..++++|+|.++ |+++++..|
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~---~~~l~~~~~i~~~--Pt~~~~~~g 76 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA---QPQIAQQFGVQAL--PTVYLFAAG 76 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC---CHHHHHHcCCCCC--CEEEEEeCC
Confidence 445444 23 457888999999 999999999999999999889999999999 5699999999998 999999865
Q ss_pred CCceeccCCCCCHHHHHHHHH
Q 021368 118 DAKKHILDGELTLDKIKTFGE 138 (313)
Q Consensus 118 ~~~~~~~~g~~~~~~i~~fi~ 138 (313)
. ....+.|..+.+.|..|+.
T Consensus 77 ~-~~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 77 Q-PVDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred E-EeeeecCCCCHHHHHHHhC
Confidence 4 3345789999999998873
No 90
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.41 E-value=1.3e-12 Score=99.32 Aligned_cols=96 Identities=18% Similarity=0.181 Sum_probs=76.1
Q ss_pred eEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-------------cc-
Q 021368 162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-------------HR- 227 (313)
Q Consensus 162 v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-------------~~- 227 (313)
+..++.+.+.+.+ .+++.++|+|+++||++|+.+.|.+.+++... ++.++.+|.+.+.. +.
T Consensus 8 ~~~it~~~~~~~i-~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~----~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~ 82 (122)
T TIGR01295 8 LEVTTVVRALEAL-DKKETATFFIGRKTCPYCRKFSGTLSGVVAQT----KAPIYYIDSENNGSFEMSSLNDLTAFRSRF 82 (122)
T ss_pred ceecCHHHHHHHH-HcCCcEEEEEECCCChhHHHHhHHHHHHHHhc----CCcEEEEECCCccCcCcccHHHHHHHHHHc
Confidence 5567778888877 46788999999999999999999999999973 35677777775421 22
Q ss_pred ---CCCCcCceEEEEeCCCCCcCceeecc-CcCHHHHHHHHH
Q 021368 228 ---AKSDGFPTILFFPAGNKSFDPINVDV-DRTVVALYKFLK 265 (313)
Q Consensus 228 ---~~v~~~P~i~~~~~g~~~~~~~~y~g-~~~~~~l~~fi~ 265 (313)
.++.++||+++|++|+.+. +..| ..+.+.|.+|+.
T Consensus 83 ~i~~~i~~~PT~v~~k~Gk~v~---~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 83 GIPTSFMGTPTFVHITDGKQVS---VRCGSSTTAQELQDIAA 121 (122)
T ss_pred CCcccCCCCCEEEEEeCCeEEE---EEeCCCCCHHHHHHHhh
Confidence 3566799999999999875 6777 556899988874
No 91
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.40 E-value=1.8e-12 Score=93.15 Aligned_cols=89 Identities=30% Similarity=0.591 Sum_probs=75.2
Q ss_pred ChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCc
Q 021368 169 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSF 246 (313)
Q Consensus 169 ~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~ 246 (313)
+|.+.+. ..++++|+||++||+.|..+.+.+.+++.. . .++.++.+|++.+.. ..+++.++|++++|++|....
T Consensus 2 ~~~~~~~-~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~--~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~ 77 (93)
T cd02947 2 EFEELIK-SAKPVVVDFWAPWCGPCKAIAPVLEELAEE-Y--PKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVD 77 (93)
T ss_pred chHHHHh-cCCcEEEEEECCCChhHHHhhHHHHHHHHH-C--CCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEE
Confidence 5666664 348999999999999999999999999988 2 369999999998654 789999999999999987654
Q ss_pred CceeeccCcCHHHHHHHH
Q 021368 247 DPINVDVDRTVVALYKFL 264 (313)
Q Consensus 247 ~~~~y~g~~~~~~l~~fi 264 (313)
.+.|..+.+.|..||
T Consensus 78 ---~~~g~~~~~~l~~~i 92 (93)
T cd02947 78 ---RVVGADPKEELEEFL 92 (93)
T ss_pred ---EEecCCCHHHHHHHh
Confidence 788878888888887
No 92
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.40 E-value=1.2e-12 Score=119.97 Aligned_cols=107 Identities=10% Similarity=0.138 Sum_probs=91.2
Q ss_pred CCCceEEeCCCccccccc---CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCCcccccchh-hhhCC
Q 021368 30 KLPLVTIFTRENAPSVFE---SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDVGKPVS-EYFGI 103 (313)
Q Consensus 30 ~~~~v~~lt~~~~~~~~~---~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~~~~~~l~-~~~~v 103 (313)
..+.|.+||+.+|+.++. .+..++|.||++| ++|+.+.|.|+++|.++.+. +.|+.|||+... ..++ +.|+|
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~--~~~~~~~~~I 426 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQ--KEFAKQELQL 426 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCc--cHHHHHHcCC
Confidence 345899999999999875 6667889999999 99999999999999999875 899999999732 2454 78999
Q ss_pred CCCCCcEEEEEcCCCCceeccC-CCCCHHHHHHHHHHH
Q 021368 104 TGEAPKVLAYTGNDDAKKHILD-GELTLDKIKTFGEDF 140 (313)
Q Consensus 104 ~~~~~P~i~~~~~~~~~~~~~~-g~~~~~~i~~fi~~~ 140 (313)
.++ |++++|.++...+..|. |.++.++|..||...
T Consensus 427 ~~~--PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 427 GSF--PTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred Ccc--ceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 999 99999998876677887 589999999999753
No 93
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.40 E-value=1.4e-12 Score=96.42 Aligned_cols=93 Identities=39% Similarity=0.527 Sum_probs=76.9
Q ss_pred cccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceec
Q 021368 45 VFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHI 123 (313)
Q Consensus 45 ~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~ 123 (313)
....+.+++++|+++| ++|+.+.+.++++|+++++++.|++||+++ ++.+++.|||.....|++++++.+.+.++.
T Consensus 8 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~---~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~ 84 (103)
T cd02982 8 YEESGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADD---FGRHLEYFGLKEEDLPVIAIINLSDGKKYL 84 (103)
T ss_pred hhhcCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHh---hHHHHHHcCCChhhCCEEEEEecccccccC
Confidence 3333567888899999 899999999999999999999999999998 568999999993233999999884444566
Q ss_pred cCCC-CCHHHHHHHHHHH
Q 021368 124 LDGE-LTLDKIKTFGEDF 140 (313)
Q Consensus 124 ~~g~-~~~~~i~~fi~~~ 140 (313)
+.+. .+.++|.+|+.++
T Consensus 85 ~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 85 MPEEELTAESLEEFVEDF 102 (103)
T ss_pred CCccccCHHHHHHHHHhh
Confidence 6544 5999999999876
No 94
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.3e-12 Score=110.45 Aligned_cols=107 Identities=18% Similarity=0.239 Sum_probs=92.8
Q ss_pred CCceEEeCCCcccccc---cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCC
Q 021368 31 LPLVTIFTRENAPSVF---ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE 106 (313)
Q Consensus 31 ~~~v~~lt~~~~~~~~---~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~ 106 (313)
.+.|.+.|..||...+ +...+++|.||++| ++|+.+.|.+++++..+.|++.+++|||+. ++.++..|||++.
T Consensus 22 a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~---~p~vAaqfgiqsI 98 (304)
T COG3118 22 APGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDA---EPMVAAQFGVQSI 98 (304)
T ss_pred cccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCc---chhHHHHhCcCcC
Confidence 3458899999999843 33347788899999 999999999999999999999999999999 6799999999999
Q ss_pred CCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcC
Q 021368 107 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG 143 (313)
Q Consensus 107 ~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~ 143 (313)
|+++.|..|+. --.|.|....+.|++|+.++++.
T Consensus 99 --PtV~af~dGqp-VdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 99 --PTVYAFKDGQP-VDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred --CeEEEeeCCcC-ccccCCCCcHHHHHHHHHHhcCh
Confidence 99988887762 33478999999999999999874
No 95
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.39 E-value=7.8e-13 Score=99.11 Aligned_cols=86 Identities=10% Similarity=0.087 Sum_probs=75.5
Q ss_pred CCCccEEEEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccC
Q 021368 48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILD 125 (313)
Q Consensus 48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~ 125 (313)
.+.+++|.||++| ++|+.+.|.|.+++.++.+ .+.|+.|||+. .+.+++++||+++ |+++++..|. ....+.
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~---~~~l~~~~~V~~~--Pt~~i~~~g~-~~~~~~ 96 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH---ERRLARKLGAHSV--PAIVGIINGQ-VTFYHD 96 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc---cHHHHHHcCCccC--CEEEEEECCE-EEEEec
Confidence 4568899999999 9999999999999999986 49999999998 5599999999999 9999998664 445568
Q ss_pred CCCCHHHHHHHHHH
Q 021368 126 GELTLDKIKTFGED 139 (313)
Q Consensus 126 g~~~~~~i~~fi~~ 139 (313)
|..+.+.|.+|+.+
T Consensus 97 G~~~~~~l~~~i~~ 110 (111)
T cd02963 97 SSFTKQHVVDFVRK 110 (111)
T ss_pred CCCCHHHHHHHHhc
Confidence 88999999999875
No 96
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.39 E-value=2.6e-12 Score=94.58 Aligned_cols=96 Identities=16% Similarity=0.135 Sum_probs=83.9
Q ss_pred ceEEeCCCcccccccCCCccEEEEEeeC---CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCc
Q 021368 33 LVTIFTRENAPSVFESPIKNQLLLFAVS---NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK 109 (313)
Q Consensus 33 ~v~~lt~~~~~~~~~~~~~~~v~f~~~~---~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P 109 (313)
.+.+++..+|++....+...++.|+++| ++|..+.|.|.++|+++.+.+.|+.||+++ ++.++.+|||++. |
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~---~~~la~~f~V~sI--P 85 (111)
T cd02965 11 GWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRAD---EQALAARFGVLRT--P 85 (111)
T ss_pred CCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCC---CHHHHHHcCCCcC--C
Confidence 4678999999998888778889999996 899999999999999999999999999999 6699999999999 9
Q ss_pred EEEEEcCCCCceeccCCCCCHHHHH
Q 021368 110 VLAYTGNDDAKKHILDGELTLDKIK 134 (313)
Q Consensus 110 ~i~~~~~~~~~~~~~~g~~~~~~i~ 134 (313)
|+++|.+|. ....+.|..+.+++.
T Consensus 86 Tli~fkdGk-~v~~~~G~~~~~e~~ 109 (111)
T cd02965 86 ALLFFRDGR-YVGVLAGIRDWDEYV 109 (111)
T ss_pred EEEEEECCE-EEEEEeCccCHHHHh
Confidence 999999875 334567877777664
No 97
>PTZ00062 glutaredoxin; Provisional
Probab=99.39 E-value=3.5e-12 Score=104.77 Aligned_cols=156 Identities=15% Similarity=0.224 Sum_probs=107.6
Q ss_pred CcccccccCC-CccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCC
Q 021368 40 ENAPSVFESP-IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGND 117 (313)
Q Consensus 40 ~~~~~~~~~~-~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~ 117 (313)
+++.++++.+ ...+++|+++| ++|+.+.+.+.+++.+|.. +.|+.||.+ |+|.+. |++++|++|
T Consensus 7 ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~-~~F~~V~~d-----------~~V~~v--Ptfv~~~~g 72 (204)
T PTZ00062 7 EEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS-LEFYVVNLA-----------DANNEY--GVFEFYQNS 72 (204)
T ss_pred HHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC-cEEEEEccc-----------cCcccc--eEEEEEECC
Confidence 4455555533 45677788999 9999999999999999977 999999964 899999 999999987
Q ss_pred CCceeccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEcCcChHHHhhcCCCcEEEEEe----CCCCccc
Q 021368 118 DAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIY----APWCGHC 193 (313)
Q Consensus 118 ~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~l~~~~k~~lv~fy----~~~C~~C 193 (313)
+.. -++.| .+...|..++..+.+... .. ...+...+++ +.++++|+-- .|+|+.|
T Consensus 73 ~~i-~r~~G-~~~~~~~~~~~~~~~~~~----------------~~-~~~~~v~~li--~~~~Vvvf~Kg~~~~p~C~~C 131 (204)
T PTZ00062 73 QLI-NSLEG-CNTSTLVSFIRGWAQKGS----------------SE-DTVEKIERLI--RNHKILLFMKGSKTFPFCRFS 131 (204)
T ss_pred EEE-eeeeC-CCHHHHHHHHHHHcCCCC----------------HH-HHHHHHHHHH--hcCCEEEEEccCCCCCCChhH
Confidence 632 23344 679999999988765211 00 0112333333 3455665544 3799999
Q ss_pred hhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--c----cCCCCcCceEEE
Q 021368 194 QAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKSDGFPTILF 238 (313)
Q Consensus 194 ~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~----~~~v~~~P~i~~ 238 (313)
+.+...|.+. ++.+..+|+..... + .-+-.++|.+++
T Consensus 132 ~~~k~~L~~~--------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI 174 (204)
T PTZ00062 132 NAVVNMLNSS--------GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV 174 (204)
T ss_pred HHHHHHHHHc--------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE
Confidence 9988887754 45666778876543 1 124457788776
No 98
>PTZ00062 glutaredoxin; Provisional
Probab=99.36 E-value=3.5e-12 Score=104.77 Aligned_cols=91 Identities=10% Similarity=0.142 Sum_probs=78.3
Q ss_pred cCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceEEEEeCCCCC
Q 021368 166 VGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKS 245 (313)
Q Consensus 166 ~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i~~~~~g~~~ 245 (313)
+.+++.+.+..+...++++|||+||++|+.+.+++.+++..+. .+.|+.||.+ ++|.++|++++|++|+.+
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~---~~~F~~V~~d------~~V~~vPtfv~~~~g~~i 75 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP---SLEFYVVNLA------DANNEYGVFEFYQNSQLI 75 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC---CcEEEEEccc------cCcccceEEEEEECCEEE
Confidence 3467777775445789999999999999999999999999885 4999999977 899999999999999988
Q ss_pred cCceeeccCcCHHHHHHHHHhcCC
Q 021368 246 FDPINVDVDRTVVALYKFLKKNAS 269 (313)
Q Consensus 246 ~~~~~y~g~~~~~~l~~fi~~~~~ 269 (313)
. ++.|. +...|..++.++.+
T Consensus 76 ~---r~~G~-~~~~~~~~~~~~~~ 95 (204)
T PTZ00062 76 N---SLEGC-NTSTLVSFIRGWAQ 95 (204)
T ss_pred e---eeeCC-CHHHHHHHHHHHcC
Confidence 6 88884 67889999988865
No 99
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.35 E-value=4.5e-12 Score=95.36 Aligned_cols=100 Identities=14% Similarity=0.221 Sum_probs=79.8
Q ss_pred ceEEeCCCcccccccCCC-ccEEEEEeeC-CchhhhhHHHHHHHHhccC---eEEEEEEeCCCcccccchhhhhCCCCCC
Q 021368 33 LVTIFTRENAPSVFESPI-KNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITGEA 107 (313)
Q Consensus 33 ~v~~lt~~~~~~~~~~~~-~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~---~v~f~~vd~~~~~~~~~l~~~~~v~~~~ 107 (313)
.+.+++..+|...+.... .++|.||++| ++|+.+.|.|++++.++.+ .+.|+.+||+... +..+|++|+|+++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~-~~~~~~~~~i~~~- 79 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE-NVALCRDFGVTGY- 79 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh-hHHHHHhCCCCCC-
Confidence 477899999998775544 6788899999 9999999999999998863 5999999997644 6789999999999
Q ss_pred CcEEEEEcCCCC---ceeccCCC-CCHHHHHH
Q 021368 108 PKVLAYTGNDDA---KKHILDGE-LTLDKIKT 135 (313)
Q Consensus 108 ~P~i~~~~~~~~---~~~~~~g~-~~~~~i~~ 135 (313)
|++++|+.+.. ....|.|. +..++++.
T Consensus 80 -Pt~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02992 80 -PTLRYFPPFSKEATDGLKQEGPERDVNELRE 110 (114)
T ss_pred -CEEEEECCCCccCCCCCcccCCccCHHHHHH
Confidence 99999988752 12345565 66666644
No 100
>PLN02309 5'-adenylylsulfate reductase
Probab=99.35 E-value=3.3e-12 Score=116.97 Aligned_cols=105 Identities=11% Similarity=0.160 Sum_probs=91.5
Q ss_pred CCceEEeCCCcccccc---cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCC-Ccccccchhh-hhCC
Q 021368 31 LPLVTIFTRENAPSVF---ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMD-NEDVGKPVSE-YFGI 103 (313)
Q Consensus 31 ~~~v~~lt~~~~~~~~---~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~-~~~~~~~l~~-~~~v 103 (313)
.+.|..|+.++|+.++ ..+..++|.||++| ++|+.+.|.|.++|.++.+. +.|+.|||+ . +..+|+ .|+|
T Consensus 344 ~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~---~~~la~~~~~I 420 (457)
T PLN02309 344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGD---QKEFAKQELQL 420 (457)
T ss_pred CCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCc---chHHHHhhCCC
Confidence 4578999999999876 46778899999999 99999999999999999874 999999999 5 458886 6999
Q ss_pred CCCCCcEEEEEcCCCCceeccCC-CCCHHHHHHHHHHH
Q 021368 104 TGEAPKVLAYTGNDDAKKHILDG-ELTLDKIKTFGEDF 140 (313)
Q Consensus 104 ~~~~~P~i~~~~~~~~~~~~~~g-~~~~~~i~~fi~~~ 140 (313)
.++ ||+++|..+...+..|.| .++.++|..|+...
T Consensus 421 ~~~--PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 421 GSF--PTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred cee--eEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 999 999999888767788874 79999999999864
No 101
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.35 E-value=6.9e-12 Score=92.90 Aligned_cols=93 Identities=18% Similarity=0.189 Sum_probs=78.7
Q ss_pred CcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccC---eEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEc
Q 021368 40 ENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTG 115 (313)
Q Consensus 40 ~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~---~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~ 115 (313)
++|+++. ....++|.||++| ++|+.+.|.|.+++..+++ .+.++.+||+. .+.++++++|.++ |+++++.
T Consensus 7 ~~~~~~~-~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~I~~~--Pt~~l~~ 80 (104)
T cd03000 7 DSFKDVR-KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA---YSSIASEFGVRGY--PTIKLLK 80 (104)
T ss_pred hhhhhhc-cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc---CHhHHhhcCCccc--cEEEEEc
Confidence 4566654 4568889999999 9999999999999999853 49999999998 5699999999999 9999997
Q ss_pred CCCCceeccCCCCCHHHHHHHHHHH
Q 021368 116 NDDAKKHILDGELTLDKIKTFGEDF 140 (313)
Q Consensus 116 ~~~~~~~~~~g~~~~~~i~~fi~~~ 140 (313)
++. ...+.|..+.+.|..|+.+.
T Consensus 81 ~~~--~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 81 GDL--AYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred CCC--ceeecCCCCHHHHHHHHHhh
Confidence 653 45678999999999999874
No 102
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.34 E-value=4.3e-12 Score=97.28 Aligned_cols=96 Identities=15% Similarity=0.253 Sum_probs=74.1
Q ss_pred hHHHhhcCC-CcEEEEEeCCCCccchhhhHHHH---HHHHHhcCCCcEEEEEEeCCCcc---------------cccCCC
Q 021368 170 FDEIVLDES-KDVLLEIYAPWCGHCQAFEPTYN---KLAKHLRGVDSIVIAKMDGTTNE---------------HHRAKS 230 (313)
Q Consensus 170 f~~~l~~~~-k~~lv~fy~~~C~~C~~~~~~~~---~la~~~~~~~~v~~~~vd~~~~~---------------~~~~~v 230 (313)
+.+.. ..+ ++++|+||++||++|+.+.+.+. .+...+++ ++.+..+|.+... ...+++
T Consensus 6 ~~~a~-~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v 82 (125)
T cd02951 6 LAEAA-ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA--HFVVVYINIDGDKEVTDFDGEALSEKELARKYRV 82 (125)
T ss_pred HHHHH-HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh--heEEEEEEccCCceeeccCCCCccHHHHHHHcCC
Confidence 34444 456 99999999999999999999885 56666654 6888889987641 157899
Q ss_pred CcCceEEEEeCC--CCCcCceeeccCcCHHHHHHHHHhcCCCC
Q 021368 231 DGFPTILFFPAG--NKSFDPINVDVDRTVVALYKFLKKNASIP 271 (313)
Q Consensus 231 ~~~P~i~~~~~g--~~~~~~~~y~g~~~~~~l~~fi~~~~~~~ 271 (313)
.++|++++|.++ +.+ .++.|..+.+.+.++|+..+...
T Consensus 83 ~~~Pt~~~~~~~gg~~~---~~~~G~~~~~~~~~~l~~~~~~~ 122 (125)
T cd02951 83 RFTPTVIFLDPEGGKEI---ARLPGYLPPDEFLAYLEYVQEKA 122 (125)
T ss_pred ccccEEEEEcCCCCcee---EEecCCCCHHHHHHHHHHHHhhh
Confidence 999999999764 443 37889888888999888776543
No 103
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.33 E-value=7.6e-12 Score=92.40 Aligned_cols=84 Identities=17% Similarity=0.273 Sum_probs=73.0
Q ss_pred CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCC--cCceEEEEeC--CCCCcCceee
Q 021368 178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSD--GFPTILFFPA--GNKSFDPINV 251 (313)
Q Consensus 178 ~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~--~~P~i~~~~~--g~~~~~~~~y 251 (313)
+++++++|+++||++|..+.+.+.++|.++++ .+.|+.+|++.+.. ..+++. ++|++++++. |.+. .+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~--~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~----~~ 85 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKG--KLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKY----LM 85 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC--eEEEEEEchHhhHHHHHHcCCChhhCCEEEEEeccccccc----CC
Confidence 68999999999999999999999999999986 69999999998765 789998 9999999988 4443 34
Q ss_pred c-cCcCHHHHHHHHHhc
Q 021368 252 D-VDRTVVALYKFLKKN 267 (313)
Q Consensus 252 ~-g~~~~~~l~~fi~~~ 267 (313)
. |..+.+.|.+||.+.
T Consensus 86 ~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 86 PEEELTAESLEEFVEDF 102 (103)
T ss_pred CccccCHHHHHHHHHhh
Confidence 4 445899999999875
No 104
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.33 E-value=1e-11 Score=97.08 Aligned_cols=102 Identities=10% Similarity=0.169 Sum_probs=85.2
Q ss_pred CcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCC
Q 021368 40 ENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDD 118 (313)
Q Consensus 40 ~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~ 118 (313)
..++.....+..++|.||++| ++|+.+.|.|.+++.++.+.+.|+.||.+... +..++++|+|.++ |++++|+.++
T Consensus 11 ~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~-~~~~~~~~~V~~i--Pt~v~~~~~G 87 (142)
T cd02950 11 TPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK-WLPEIDRYRVDGI--PHFVFLDREG 87 (142)
T ss_pred CCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc-cHHHHHHcCCCCC--CEEEEECCCC
Confidence 345666677778999999999 99999999999999999888889988887643 4678999999999 9999996444
Q ss_pred CceeccCCCCCHHHHHHHHHHHhcCC
Q 021368 119 AKKHILDGELTLDKIKTFGEDFLEGK 144 (313)
Q Consensus 119 ~~~~~~~g~~~~~~i~~fi~~~~~~~ 144 (313)
.....+.|..+.+.|.+++...+.+.
T Consensus 88 ~~v~~~~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 88 NEEGQSIGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 44556789999999999999998754
No 105
>PHA02278 thioredoxin-like protein
Probab=99.31 E-value=4.4e-12 Score=93.19 Aligned_cols=94 Identities=14% Similarity=0.111 Sum_probs=76.7
Q ss_pred CcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcc-cccchhhhhCCCCCCCcEEEEEcCC
Q 021368 40 ENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED-VGKPVSEYFGITGEAPKVLAYTGND 117 (313)
Q Consensus 40 ~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~-~~~~l~~~~~v~~~~~P~i~~~~~~ 117 (313)
++|.+.+..+..++|.||++| ++|+.+.|.|++++.++.+.+.|+.||++... +...++++|+|.+. ||+++|++|
T Consensus 5 ~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~i--PT~i~fk~G 82 (103)
T PHA02278 5 VDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMST--PVLIGYKDG 82 (103)
T ss_pred HHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccc--cEEEEEECC
Confidence 456666677788999999999 99999999999999987776889999998731 12579999999999 999999987
Q ss_pred CCceeccCCCCCHHHHHHH
Q 021368 118 DAKKHILDGELTLDKIKTF 136 (313)
Q Consensus 118 ~~~~~~~~g~~~~~~i~~f 136 (313)
.. ..++.|..+.+.|.++
T Consensus 83 ~~-v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 83 QL-VKKYEDQVTPMQLQEL 100 (103)
T ss_pred EE-EEEEeCCCCHHHHHhh
Confidence 53 3456788888887765
No 106
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.31 E-value=9.1e-12 Score=91.42 Aligned_cols=97 Identities=22% Similarity=0.274 Sum_probs=80.5
Q ss_pred CCCcccccccC-CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEc
Q 021368 38 TRENAPSVFES-PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTG 115 (313)
Q Consensus 38 t~~~~~~~~~~-~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~ 115 (313)
+.+++...+.. +..++|+||++| +.|+.+.+.|.+++.++.+.+.|+.+|++. +..++++|||..+ |+++++.
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~--P~~~~~~ 76 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDE---NPDIAAKYGIRSI--PTLLLFK 76 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCC---CHHHHHHcCCCcC--CEEEEEe
Confidence 34455555444 347788899999 999999999999999999889999999998 5699999999988 9999997
Q ss_pred CCCCceeccCCCCCHHHHHHHHHHH
Q 021368 116 NDDAKKHILDGELTLDKIKTFGEDF 140 (313)
Q Consensus 116 ~~~~~~~~~~g~~~~~~i~~fi~~~ 140 (313)
.+. ....+.|..+.+.|.+|+.+.
T Consensus 77 ~g~-~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 77 NGK-EVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred CCc-EeeeecCCCCHHHHHHHHHhh
Confidence 664 345567888999999999864
No 107
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.30 E-value=4.9e-12 Score=93.78 Aligned_cols=73 Identities=5% Similarity=-0.001 Sum_probs=64.0
Q ss_pred ccccccc--CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCC
Q 021368 41 NAPSVFE--SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGND 117 (313)
Q Consensus 41 ~~~~~~~--~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~ 117 (313)
+|+..+. .+..++|.||++| ++|+.+.|.|.++|.++.+.+.|+.||+++ ++.++++|||++. ||+++|++|
T Consensus 4 ~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~---~~~la~~~~V~~i--PTf~~fk~G 78 (114)
T cd02954 4 AVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE---VPDFNKMYELYDP--PTVMFFFRN 78 (114)
T ss_pred HHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC---CHHHHHHcCCCCC--CEEEEEECC
Confidence 4444443 3556788899999 999999999999999999989999999999 7799999999998 999999987
Q ss_pred C
Q 021368 118 D 118 (313)
Q Consensus 118 ~ 118 (313)
.
T Consensus 79 ~ 79 (114)
T cd02954 79 K 79 (114)
T ss_pred E
Confidence 6
No 108
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.28 E-value=1.6e-11 Score=92.19 Aligned_cols=91 Identities=19% Similarity=0.285 Sum_probs=70.2
Q ss_pred cCcChHHHhhcC-CCcEEEEEeC-------CCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc--------c-ccC
Q 021368 166 VGNNFDEIVLDE-SKDVLLEIYA-------PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--------H-HRA 228 (313)
Q Consensus 166 ~~~~f~~~l~~~-~k~~lv~fy~-------~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~--------~-~~~ 228 (313)
+.++|.+.+... +++++|.||| +||++|+.+.|.+.+++..+.+ ++.|+.+|++... . .++
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~--~v~fv~Vdvd~~~~w~d~~~~~~~~~ 85 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE--DCVFIYCDVGDRPYWRDPNNPFRTDP 85 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC--CCEEEEEEcCCcccccCcchhhHhcc
Confidence 346677777543 5899999999 9999999999999999999875 5889999997632 1 678
Q ss_pred CCC-cCceEEEEeCCCCCcCceeecc--CcCHHHHHHHH
Q 021368 229 KSD-GFPTILFFPAGNKSFDPINVDV--DRTVVALYKFL 264 (313)
Q Consensus 229 ~v~-~~P~i~~~~~g~~~~~~~~y~g--~~~~~~l~~fi 264 (313)
++. ++||+++|+.|.++ .| -.+...+..|+
T Consensus 86 ~I~~~iPT~~~~~~~~~l------~~~~c~~~~~~~~~~ 118 (119)
T cd02952 86 KLTTGVPTLLRWKTPQRL------VEDECLQADLVEMFF 118 (119)
T ss_pred CcccCCCEEEEEcCCcee------cchhhcCHHHHHHhh
Confidence 888 99999999776542 23 23666666554
No 109
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.27 E-value=7.4e-12 Score=94.50 Aligned_cols=91 Identities=23% Similarity=0.465 Sum_probs=62.9
Q ss_pred hcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-ccCCCCc--CceEEEEe-CCCCCcCcee
Q 021368 175 LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDG--FPTILFFP-AGNKSFDPIN 250 (313)
Q Consensus 175 ~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-~~~~v~~--~P~i~~~~-~g~~~~~~~~ 250 (313)
...+++++|.||++||++|+.+.+.+.+.+.......++..+.+|.+.... ..+++.+ +|++++|. +|+.+.+.+.
T Consensus 16 ~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~~ 95 (117)
T cd02959 16 KDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEIIN 95 (117)
T ss_pred HHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhhcc
Confidence 456899999999999999999999999987765432245554455433222 5777775 99999995 7777644445
Q ss_pred eccCcCHHHHHHHHH
Q 021368 251 VDVDRTVVALYKFLK 265 (313)
Q Consensus 251 y~g~~~~~~l~~fi~ 265 (313)
..|..+...+..+|.
T Consensus 96 ~~~~~~~~~f~~~~~ 110 (117)
T cd02959 96 KKGNPNYKYFYSSAA 110 (117)
T ss_pred CCCCccccccCCCHH
Confidence 666555544444443
No 110
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.26 E-value=3.6e-11 Score=90.24 Aligned_cols=100 Identities=10% Similarity=0.030 Sum_probs=81.4
Q ss_pred CceEEeCC-CcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCc
Q 021368 32 PLVTIFTR-ENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK 109 (313)
Q Consensus 32 ~~v~~lt~-~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P 109 (313)
..+..++. ++|.+.+..+..++|.||++| ++|+.+.|.|++++.++.+ +.|+.||+++ ++.++++|+|... |
T Consensus 4 g~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~---~~~l~~~~~v~~v--P 77 (113)
T cd02989 4 GKYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEK---APFLVEKLNIKVL--P 77 (113)
T ss_pred CCeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEccc---CHHHHHHCCCccC--C
Confidence 45666766 778887777788899999999 9999999999999999987 8999999999 6699999999988 9
Q ss_pred EEEEEcCCCCcee-----ccC--CCCCHHHHHHHH
Q 021368 110 VLAYTGNDDAKKH-----ILD--GELTLDKIKTFG 137 (313)
Q Consensus 110 ~i~~~~~~~~~~~-----~~~--g~~~~~~i~~fi 137 (313)
++++|.+|..... .+. +..+.+++..|+
T Consensus 78 t~l~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 78 TVILFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EEEEEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 9999988763211 111 356777777765
No 111
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.25 E-value=2.8e-11 Score=91.02 Aligned_cols=81 Identities=14% Similarity=0.139 Sum_probs=70.9
Q ss_pred CCceEEeCCCcccccccCC---CccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCC
Q 021368 31 LPLVTIFTRENAPSVFESP---IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE 106 (313)
Q Consensus 31 ~~~v~~lt~~~~~~~~~~~---~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~ 106 (313)
...+.+++.++|.+.+... ..++|.||++| ++|+.+.|.|+++|.++.+ +.|+.||+++ + .++++|+|.++
T Consensus 3 ~g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~~---~-~l~~~~~i~~~ 77 (113)
T cd02957 3 FGEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAEK---A-FLVNYLDIKVL 77 (113)
T ss_pred CceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEchh---h-HHHHhcCCCcC
Confidence 3467788888888776544 67788899999 9999999999999999987 8999999987 6 89999999999
Q ss_pred CCcEEEEEcCCC
Q 021368 107 APKVLAYTGNDD 118 (313)
Q Consensus 107 ~~P~i~~~~~~~ 118 (313)
|++++|.+|+
T Consensus 78 --Pt~~~f~~G~ 87 (113)
T cd02957 78 --PTLLVYKNGE 87 (113)
T ss_pred --CEEEEEECCE
Confidence 9999998876
No 112
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.25 E-value=2.2e-11 Score=95.69 Aligned_cols=82 Identities=16% Similarity=0.240 Sum_probs=71.4
Q ss_pred CceEEeCCCcccccccC--CCccEEEEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcccccchhhhhCCCC--
Q 021368 32 PLVTIFTRENAPSVFES--PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITG-- 105 (313)
Q Consensus 32 ~~v~~lt~~~~~~~~~~--~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~~~~~l~~~~~v~~-- 105 (313)
..+.++++++|++.+.. ...++|.||++| ++|+.+.|.|.+++.++.+ .+.|+.|||++ ++.++++|+|..
T Consensus 28 ~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~---~~~la~~~~V~~~~ 104 (152)
T cd02962 28 EHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR---FPNVAEKFRVSTSP 104 (152)
T ss_pred CccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC---CHHHHHHcCceecC
Confidence 36788999999987633 346788899999 9999999999999999985 59999999999 669999999987
Q ss_pred ----CCCcEEEEEcCCC
Q 021368 106 ----EAPKVLAYTGNDD 118 (313)
Q Consensus 106 ----~~~P~i~~~~~~~ 118 (313)
+ ||+++|.+|+
T Consensus 105 ~v~~~--PT~ilf~~Gk 119 (152)
T cd02962 105 LSKQL--PTIILFQGGK 119 (152)
T ss_pred CcCCC--CEEEEEECCE
Confidence 7 9999998776
No 113
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.25 E-value=4.8e-11 Score=84.21 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=67.3
Q ss_pred EEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeeccCcCHH
Q 021368 181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVV 258 (313)
Q Consensus 181 ~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~ 258 (313)
.+..||++||++|+.+.+.+.+++..+.. .+.+..+|++.+.. .++++.++|++++ +|.. .+.|..+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~~-----~~~G~~~~~ 72 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD--AVEVEYINVMENPQKAMEYGIMAVPAIVI--NGDV-----EFIGAPTKE 72 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC--ceEEEEEeCccCHHHHHHcCCccCCEEEE--CCEE-----EEecCCCHH
Confidence 46789999999999999999999998865 58899999887665 6899999999986 5542 788988999
Q ss_pred HHHHHHHhcC
Q 021368 259 ALYKFLKKNA 268 (313)
Q Consensus 259 ~l~~fi~~~~ 268 (313)
.|.++|.+.+
T Consensus 73 ~l~~~l~~~~ 82 (82)
T TIGR00411 73 ELVEAIKKRL 82 (82)
T ss_pred HHHHHHHhhC
Confidence 9999998653
No 114
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.25 E-value=2.6e-11 Score=93.42 Aligned_cols=103 Identities=10% Similarity=0.036 Sum_probs=80.4
Q ss_pred CCcccccc--cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEc
Q 021368 39 RENAPSVF--ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTG 115 (313)
Q Consensus 39 ~~~~~~~~--~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~ 115 (313)
..++++.+ .....++|.||++| ++|+.+.|.|.++|.++.+.+.|+.||.++ ++++++.|+|++. +|+++||+
T Consensus 11 ~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe---~~dla~~y~I~~~-~t~~~ffk 86 (142)
T PLN00410 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITE---VPDFNTMYELYDP-CTVMFFFR 86 (142)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCC---CHHHHHHcCccCC-CcEEEEEE
Confidence 34556555 34556677799999 999999999999999999999999999999 7799999999855 45665888
Q ss_pred CCCCceeccCC--------CCCHHHHHHHHHHHhcCCC
Q 021368 116 NDDAKKHILDG--------ELTLDKIKTFGEDFLEGKL 145 (313)
Q Consensus 116 ~~~~~~~~~~g--------~~~~~~i~~fi~~~~~~~~ 145 (313)
+|+.......| ..+.++|.+-++.++.|..
T Consensus 87 ~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~ 124 (142)
T PLN00410 87 NKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGAR 124 (142)
T ss_pred CCeEEEEEecccccccccccCCHHHHHHHHHHHHHHHh
Confidence 77533333455 4788888888888876554
No 115
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.25 E-value=1.6e-11 Score=90.70 Aligned_cols=95 Identities=15% Similarity=0.136 Sum_probs=73.4
Q ss_pred CcccccccC--CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcC
Q 021368 40 ENAPSVFES--PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGN 116 (313)
Q Consensus 40 ~~~~~~~~~--~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~ 116 (313)
++|+..+.. +..++|.||++| ++|+.+.|.|.+++.++ +.+.|+.||+++......++++|+|.++ |+++++++
T Consensus 4 ~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~--Pt~~~~~~ 80 (103)
T cd02985 4 EELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEV--PHFLFYKD 80 (103)
T ss_pred HHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcC--CEEEEEeC
Confidence 445555533 567888899999 99999999999999999 5599999999874213589999999999 99999976
Q ss_pred CCCceeccCCCCCHHHHHHHHHH
Q 021368 117 DDAKKHILDGELTLDKIKTFGED 139 (313)
Q Consensus 117 ~~~~~~~~~g~~~~~~i~~fi~~ 139 (313)
|. ....+.| ...+.|.+-+..
T Consensus 81 G~-~v~~~~G-~~~~~l~~~~~~ 101 (103)
T cd02985 81 GE-KIHEEEG-IGPDELIGDVLY 101 (103)
T ss_pred Ce-EEEEEeC-CCHHHHHHHHHh
Confidence 64 3455666 556777666543
No 116
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.25 E-value=2e-11 Score=90.05 Aligned_cols=94 Identities=9% Similarity=0.124 Sum_probs=77.4
Q ss_pred CCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEc
Q 021368 38 TRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTG 115 (313)
Q Consensus 38 t~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~ 115 (313)
|.++|+.++..+.+++|.||++| ++|+.+.|.|.+++..+++ .+.|+.+|++. ..++++|+|+++ |++++++
T Consensus 6 ~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~----~~~~~~~~v~~~--Pt~~~~~ 79 (102)
T cd02948 6 NQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADT----IDTLKRYRGKCE--PTFLFYK 79 (102)
T ss_pred CHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCC----HHHHHHcCCCcC--cEEEEEE
Confidence 55667777777878889999999 9999999999999999985 48899999983 378999999999 9999998
Q ss_pred CCCCceeccCCCCCHHHHHHHHHH
Q 021368 116 NDDAKKHILDGELTLDKIKTFGED 139 (313)
Q Consensus 116 ~~~~~~~~~~g~~~~~~i~~fi~~ 139 (313)
+|.. .....| .+.+.+.++|.+
T Consensus 80 ~g~~-~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 80 NGEL-VAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred CCEE-EEEEec-CChHHHHHHHhh
Confidence 7652 233445 588889888865
No 117
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.22 E-value=3.8e-11 Score=88.88 Aligned_cols=97 Identities=15% Similarity=0.123 Sum_probs=79.4
Q ss_pred CcccccccCCCccEEEEEeeC-CchhhhhHHH---HHHHHhccCeEEEEEEeCCCccc-ccchhhhhCCCCCCCcEEEEE
Q 021368 40 ENAPSVFESPIKNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDNEDV-GKPVSEYFGITGEAPKVLAYT 114 (313)
Q Consensus 40 ~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~---~~~a~~~~~~v~f~~vd~~~~~~-~~~l~~~~~v~~~~~P~i~~~ 114 (313)
+.|.+....+.+++|+||++| ++|+.+.+.+ .+++..+.+.+.++.||++.... ...++++++|.++ |++++|
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~--Pti~~~ 79 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGP--PTYLFY 79 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCC--CEEEEE
Confidence 345666677788899999999 9999999988 68899998779999999976321 3589999999998 999999
Q ss_pred cC-CCCceeccCCCCCHHHHHHHHH
Q 021368 115 GN-DDAKKHILDGELTLDKIKTFGE 138 (313)
Q Consensus 115 ~~-~~~~~~~~~g~~~~~~i~~fi~ 138 (313)
+. ++.....+.|.++.++|.+++.
T Consensus 80 ~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 80 GPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCCCCcccccccCHHHHHHHhC
Confidence 85 3345667889999999988863
No 118
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.22 E-value=1.8e-11 Score=111.41 Aligned_cols=118 Identities=28% Similarity=0.530 Sum_probs=91.9
Q ss_pred CCCCCCCCCCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCC-CcEEEEEEeCCCccc----
Q 021368 151 SDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEH---- 225 (313)
Q Consensus 151 s~~~~~~~~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~~---- 225 (313)
+.+..-++.++|..|+.++|+..+..+.+..+|.||++||++|+.+.|.|+++|..+... +-|.++.|||.....
T Consensus 30 ~~ptLy~~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lC 109 (606)
T KOG1731|consen 30 SNPTLYSPDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLC 109 (606)
T ss_pred CCCcccCCCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhH
Confidence 334444456899999999999999888889999999999999999999999999998874 468899999998766
Q ss_pred ccCCCCcCceEEEEeCCCCC-cCceeeccCcCHHHHHHHHHhcC
Q 021368 226 HRAKSDGFPTILFFPAGNKS-FDPINVDVDRTVVALYKFLKKNA 268 (313)
Q Consensus 226 ~~~~v~~~P~i~~~~~g~~~-~~~~~y~g~~~~~~l~~fi~~~~ 268 (313)
.+++|+++|++.+|+.+... .....+.|.-...++...+.+.+
T Consensus 110 Ref~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~l 153 (606)
T KOG1731|consen 110 REFSVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTL 153 (606)
T ss_pred hhcCCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHH
Confidence 68999999999999876432 11235555444444544444443
No 119
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=99.22 E-value=6.8e-11 Score=88.22 Aligned_cols=107 Identities=23% Similarity=0.183 Sum_probs=93.0
Q ss_pred eEEeCCCcccccccCCCccEEEEEeeCCchhhhhHHHHHHHHh---ccCeEEEEEEeCCCcccccchhhhhCCCCCCCcE
Q 021368 34 VTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKS---FKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV 110 (313)
Q Consensus 34 v~~lt~~~~~~~~~~~~~~~v~f~~~~~~c~~~~~~~~~~a~~---~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~ 110 (313)
|.++|.++...++..+.+..++|| .......+...++++|++ ++|++.|+.+|.+.+. ...+.||++....|+
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f-~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~---~~~~~fgl~~~~~P~ 76 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFH-DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFR---HPLLHLGKTPADLPV 76 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEe-cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhh---hHHHHcCCCHhHCCE
Confidence 568899999999999988888888 335678899999999999 9999999999999965 589999999855799
Q ss_pred EEEEcCCCCceec-cCCCCCHHHHHHHHHHHhcCC
Q 021368 111 LAYTGNDDAKKHI-LDGELTLDKIKTFGEDFLEGK 144 (313)
Q Consensus 111 i~~~~~~~~~~~~-~~g~~~~~~i~~fi~~~~~~~ 144 (313)
+++...+...+|. +.+..+.++|.+|+.+++.|+
T Consensus 77 i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~Gk 111 (111)
T cd03072 77 IAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHSGK 111 (111)
T ss_pred EEEEcchhcCcCCCCccccCHHHHHHHHHHHhcCC
Confidence 9999886556777 778999999999999999874
No 120
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.7e-10 Score=84.89 Aligned_cols=83 Identities=13% Similarity=0.231 Sum_probs=68.5
Q ss_pred CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCC
Q 021368 49 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE 127 (313)
Q Consensus 49 ~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~ 127 (313)
+...+|.||++| ++|+.+.|.+.++|.+|.+ +.|+.||+++ ...+++.++|+.. ||++|+++|+.. -.+-|
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde---~~~~~~~~~V~~~--PTf~f~k~g~~~-~~~vG- 92 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDE---LEEVAKEFNVKAM--PTFVFYKGGEEV-DEVVG- 92 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEeccc---CHhHHHhcCceEe--eEEEEEECCEEE-EEEec-
Confidence 356677899999 9999999999999999999 9999999998 6799999999999 999999888632 22333
Q ss_pred CCHHHHHHHHHH
Q 021368 128 LTLDKIKTFGED 139 (313)
Q Consensus 128 ~~~~~i~~fi~~ 139 (313)
.+.+.+.+.+..
T Consensus 93 a~~~~l~~~i~~ 104 (106)
T KOG0907|consen 93 ANKAELEKKIAK 104 (106)
T ss_pred CCHHHHHHHHHh
Confidence 445566666654
No 121
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.15 E-value=2.1e-10 Score=86.11 Aligned_cols=90 Identities=14% Similarity=0.136 Sum_probs=76.0
Q ss_pred cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCC-Cceecc
Q 021368 47 ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDD-AKKHIL 124 (313)
Q Consensus 47 ~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~-~~~~~~ 124 (313)
..+...+|+|+++| ++|+.+.|.+++++..+ +.+.|..+|.++ ++.++.+|+|.+. |++++++++. .....+
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~---~~~l~~~~~v~~v--Pt~~i~~~g~~~~~~~~ 93 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDE---DKEKAEKYGVERV--PTTIFLQDGGKDGGIRY 93 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCc---CHHHHHHcCCCcC--CEEEEEeCCeecceEEE
Confidence 44556667788999 99999999999999987 569999999998 6799999999999 9999998654 234467
Q ss_pred CCCCCHHHHHHHHHHHhc
Q 021368 125 DGELTLDKIKTFGEDFLE 142 (313)
Q Consensus 125 ~g~~~~~~i~~fi~~~~~ 142 (313)
.|....+++..||..++.
T Consensus 94 ~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 94 YGLPAGYEFASLIEDIVR 111 (113)
T ss_pred EecCchHHHHHHHHHHHh
Confidence 898999999999998764
No 122
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.14 E-value=1.2e-10 Score=85.02 Aligned_cols=91 Identities=20% Similarity=0.222 Sum_probs=71.8
Q ss_pred CcccccccCC--CccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcC
Q 021368 40 ENAPSVFESP--IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGN 116 (313)
Q Consensus 40 ~~~~~~~~~~--~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~ 116 (313)
++|++.+... ..++|.||++| ++|+.+.+.|++++.++...+.|+.+|+++ ++.++++|+|.++ |++++|.+
T Consensus 3 ~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~---~~~~~~~~~i~~~--Pt~~~~~~ 77 (97)
T cd02984 3 EEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEE---LPEISEKFEITAV--PTFVFFRN 77 (97)
T ss_pred HHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEcccc---CHHHHHhcCCccc--cEEEEEEC
Confidence 3455555544 67888999999 999999999999999987679999999988 6699999999988 99999986
Q ss_pred CCCceeccCCCCCHHHHHHHH
Q 021368 117 DDAKKHILDGELTLDKIKTFG 137 (313)
Q Consensus 117 ~~~~~~~~~g~~~~~~i~~fi 137 (313)
|.. ...+.| ...+.|.+.|
T Consensus 78 g~~-~~~~~g-~~~~~l~~~~ 96 (97)
T cd02984 78 GTI-VDRVSG-ADPKELAKKV 96 (97)
T ss_pred CEE-EEEEeC-CCHHHHHHhh
Confidence 642 223344 5667766654
No 123
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.13 E-value=6.3e-09 Score=89.62 Aligned_cols=216 Identities=16% Similarity=0.165 Sum_probs=135.3
Q ss_pred CCceEEeCCCcccccccCCCccEEEEEeeC-Cchhh-----hhH-HHHHHHHhccC-eEEEEEEeCCCcccccchhhhhC
Q 021368 31 LPLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEK-----LLP-VFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFG 102 (313)
Q Consensus 31 ~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~-----~~~-~~~~~a~~~~~-~v~f~~vd~~~~~~~~~l~~~~~ 102 (313)
-+.|..||..||.+..++-...+|+|+.+. ..-.. +.. .++=+|+-+.. .|.|+.||..+ ..++++++|
T Consensus 33 kDRVi~LneKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~K---d~klAKKLg 109 (383)
T PF01216_consen 33 KDRVIDLNEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKK---DAKLAKKLG 109 (383)
T ss_dssp S--CEEE-TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTT---THHHHHHHT
T ss_pred ccceEEcchhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHH---HHHHHHhcC
Confidence 347899999999999887766677777776 32211 112 33334444443 39999999999 459999999
Q ss_pred CCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEcCcChHHHhhc-CCCcE
Q 021368 103 ITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLD-ESKDV 181 (313)
Q Consensus 103 v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~l~~-~~k~~ 181 (313)
+... +++.+|..+. .+.|.|.++++.+..|+.+.+. .+|..++.+.=.+...+ .....
T Consensus 110 v~E~--~SiyVfkd~~--~IEydG~~saDtLVeFl~dl~e-----------------dPVeiIn~~~e~~~Fe~ied~~k 168 (383)
T PF01216_consen 110 VEEE--GSIYVFKDGE--VIEYDGERSADTLVEFLLDLLE-----------------DPVEIINNKHELKAFERIEDDIK 168 (383)
T ss_dssp --ST--TEEEEEETTE--EEEE-S--SHHHHHHHHHHHHS-----------------SSEEEE-SHHHHHHHHH--SS-E
T ss_pred cccc--CcEEEEECCc--EEEecCccCHHHHHHHHHHhcc-----------------cchhhhcChhhhhhhhhccccee
Confidence 9998 8888887764 7788999999999999999987 56888877544333322 34577
Q ss_pred EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceEEEEeCCCCCcCceeecc-CcCHHHH
Q 021368 182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDV-DRTVVAL 260 (313)
Q Consensus 182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i~~~~~g~~~~~~~~y~g-~~~~~~l 260 (313)
+|-|+.+--+ .....|.++|..|+. .+.|...= +..-..++++. .=.+-+|..=.. .|+.+-| +.+.+.|
T Consensus 169 lIGyFk~~~s---~~yk~FeeAAe~F~p--~IkFfAtf-d~~vAk~L~lK-~nev~fyepF~~--~pi~ip~~p~~e~e~ 239 (383)
T PF01216_consen 169 LIGYFKSEDS---EHYKEFEEAAEHFQP--YIKFFATF-DKKVAKKLGLK-LNEVDFYEPFMD--EPITIPGKPYTEEEL 239 (383)
T ss_dssp EEEE-SSTTS---HHHHHHHHHHHHCTT--TSEEEEE--SHHHHHHHT-S-TT-EEEE-TTSS--SEEEESSSS--HHHH
T ss_pred EEEEeCCCCc---HHHHHHHHHHHhhcC--ceeEEEEe-cchhhhhcCcc-ccceeeeccccC--CCccCCCCCCCHHHH
Confidence 7766655322 345678999999987 56665432 22233566664 556778866444 6788887 5678899
Q ss_pred HHHHHhcCCCCccccCCCC
Q 021368 261 YKFLKKNASIPFKIQKPTS 279 (313)
Q Consensus 261 ~~fi~~~~~~~~~~~~~~~ 279 (313)
..||++|-.+..+..+|.+
T Consensus 240 ~~fi~~h~rptlrkl~~~~ 258 (383)
T PF01216_consen 240 VEFIEEHKRPTLRKLRPED 258 (383)
T ss_dssp HHHHHHT-S-SEEE--GGG
T ss_pred HHHHHHhchhHhhhCChhh
Confidence 9999999888777776643
No 124
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.12 E-value=4.2e-09 Score=100.78 Aligned_cols=180 Identities=15% Similarity=0.102 Sum_probs=135.7
Q ss_pred EEEEEeeC--CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEc-CCCCceeccCCCCC
Q 021368 53 QLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTG-NDDAKKHILDGELT 129 (313)
Q Consensus 53 ~v~f~~~~--~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~-~~~~~~~~~~g~~~ 129 (313)
.+.+|.+. ..|.++...+++++ .+.+++.+...|..+ ..++..+||+... |++.+.+ .+....+.|.|-..
T Consensus 369 ~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~i~~~~~~~~~---~~~~~~~~~v~~~--P~~~i~~~~~~~~~i~f~g~P~ 442 (555)
T TIGR03143 369 TLLLFLDGSNEKSAELQSFLGEFA-SLSEKLNSEAVNRGE---EPESETLPKITKL--PTVALLDDDGNYTGLKFHGVPS 442 (555)
T ss_pred EEEEEECCCchhhHHHHHHHHHHH-hcCCcEEEEEecccc---chhhHhhcCCCcC--CEEEEEeCCCcccceEEEecCc
Confidence 34455544 58999999999999 666779998888876 4588999999988 9999985 44344578899999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEcCcChHHHhhcCCCcE-EEEEeCCCCccchhhhHHHHHHHHHhc
Q 021368 130 LDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDV-LLEIYAPWCGHCQAFEPTYNKLAKHLR 208 (313)
Q Consensus 130 ~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~l~~~~k~~-lv~fy~~~C~~C~~~~~~~~~la~~~~ 208 (313)
-.++..||..++.-.-. -..|+.+.. +.|..-++++ +-.|.+++|+.|..+...+.+++....
T Consensus 443 G~Ef~s~i~~i~~~~~~---------------~~~l~~~~~-~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~ 506 (555)
T TIGR03143 443 GHELNSFILALYNAAGP---------------GQPLGEELL-EKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP 506 (555)
T ss_pred cHhHHHHHHHHHHhcCC---------------CCCCCHHHH-HHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC
Confidence 99999999888652111 112433333 3454556665 556689999999999888888887743
Q ss_pred CCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHH
Q 021368 209 GVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFL 264 (313)
Q Consensus 209 ~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi 264 (313)
++..-.+|...... .+|+|.++|++++ +|.. .+.|..+.++|+.||
T Consensus 507 ---~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~-----~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 507 ---NVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQ-----VYFGKKTIEEMLELI 554 (555)
T ss_pred ---CceEEEEECcccHHHHHhCCceecCEEEE--CCEE-----EEeeCCCHHHHHHhh
Confidence 57778888888776 6999999999998 4443 678988999999886
No 125
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.11 E-value=4.8e-10 Score=82.52 Aligned_cols=89 Identities=13% Similarity=0.023 Sum_probs=70.9
Q ss_pred CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceecc--
Q 021368 48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHIL-- 124 (313)
Q Consensus 48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~-- 124 (313)
..+.++|.|+++| ++|+.+.|.|.++|.++.+.+.|+.||.++ .+++++.|+|+.. |++++|.+|+.-...+
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDe---v~dva~~y~I~am--Ptfvffkngkh~~~d~gt 87 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDK---VPVYTQYFDISYI--PSTIFFFNGQHMKVDYGS 87 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccc---cHHHHHhcCceeC--cEEEEEECCcEEEEecCC
Confidence 4556777799999 999999999999999998889999999998 7799999999988 9988998776433333
Q ss_pred ------CCC-CCHHHHHHHHHHHh
Q 021368 125 ------DGE-LTLDKIKTFGEDFL 141 (313)
Q Consensus 125 ------~g~-~~~~~i~~fi~~~~ 141 (313)
.+. .+.+.+..-++-..
T Consensus 88 ~~~~k~~~~~~~k~~~idi~e~~y 111 (114)
T cd02986 88 PDHTKFVGSFKTKQDFIDLIEVIY 111 (114)
T ss_pred CCCcEEEEEcCchhHHHHHHHHHH
Confidence 122 34566666666544
No 126
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.10 E-value=2.7e-10 Score=95.68 Aligned_cols=89 Identities=11% Similarity=0.176 Sum_probs=71.0
Q ss_pred CCcEEEEEeC---CCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeec
Q 021368 178 SKDVLLEIYA---PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVD 252 (313)
Q Consensus 178 ~k~~lv~fy~---~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~ 252 (313)
+...++.|++ +||++|+.+.|.+.+++..+... .+.++.+|.+.+.. .+|+|.++||+++|++|..+ ..+|.
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~-~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~--~~~~~ 95 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKL-KLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDG--GIRYT 95 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCc-eEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeee--EEEEe
Confidence 3445667888 99999999999999999988432 35566666555554 79999999999999998863 24789
Q ss_pred cCcCHHHHHHHHHhcCC
Q 021368 253 VDRTVVALYKFLKKNAS 269 (313)
Q Consensus 253 g~~~~~~l~~fi~~~~~ 269 (313)
|..+.+.|.+||...+.
T Consensus 96 G~~~~~~l~~~i~~~~~ 112 (215)
T TIGR02187 96 GIPAGYEFAALIEDIVR 112 (215)
T ss_pred ecCCHHHHHHHHHHHHH
Confidence 98888999999998854
No 127
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.10 E-value=4.5e-10 Score=90.78 Aligned_cols=102 Identities=10% Similarity=0.110 Sum_probs=82.8
Q ss_pred CCceEEeCC-CcccccccCCC---ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCC
Q 021368 31 LPLVTIFTR-ENAPSVFESPI---KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITG 105 (313)
Q Consensus 31 ~~~v~~lt~-~~~~~~~~~~~---~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~ 105 (313)
...+.+++. ++|...+.... .++|.||++| ++|+.+.|.|.++|.++.. +.|+.||++. . .++..|+|..
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~-vkF~kVd~d~---~-~l~~~f~v~~ 135 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA-VKFCKIRASA---T-GASDEFDTDA 135 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCC-eEEEEEeccc---h-hhHHhCCCCC
Confidence 567889998 88888775433 6778899999 9999999999999999976 9999999987 4 7899999998
Q ss_pred CCCcEEEEEcCCCCceec------cCCCCCHHHHHHHHHH
Q 021368 106 EAPKVLAYTGNDDAKKHI------LDGELTLDKIKTFGED 139 (313)
Q Consensus 106 ~~~P~i~~~~~~~~~~~~------~~g~~~~~~i~~fi~~ 139 (313)
. ||+++|.+|...... .....+.+.|..|+.+
T Consensus 136 v--PTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 136 L--PALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred C--CEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 8 999999887632111 1235788888888765
No 128
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.09 E-value=5e-10 Score=81.73 Aligned_cols=86 Identities=20% Similarity=0.338 Sum_probs=73.9
Q ss_pred cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccC
Q 021368 47 ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILD 125 (313)
Q Consensus 47 ~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~ 125 (313)
+.+..++++|+++| +.|+.+.|.++++++++.+.+.++.+|+++ +++++++++|.++ |+++++++++ ....+.
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~---~~~l~~~~~v~~v--Pt~~i~~~g~-~v~~~~ 84 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE---DQEIAEAAGIMGT--PTVQFFKDKE-LVKEIS 84 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCC---CHHHHHHCCCeec--cEEEEEECCe-EEEEEe
Confidence 45556778899999 999999999999999999889999999988 5699999999988 9999998654 455678
Q ss_pred CCCCHHHHHHHHH
Q 021368 126 GELTLDKIKTFGE 138 (313)
Q Consensus 126 g~~~~~~i~~fi~ 138 (313)
|..+.+.|.+|++
T Consensus 85 g~~~~~~~~~~l~ 97 (97)
T cd02949 85 GVKMKSEYREFIE 97 (97)
T ss_pred CCccHHHHHHhhC
Confidence 8899999888863
No 129
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.05 E-value=4.7e-10 Score=77.82 Aligned_cols=73 Identities=21% Similarity=0.269 Sum_probs=58.3
Q ss_pred EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceEEEEeCCCCCcCceeeccC-cCHHHH
Q 021368 182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVD-RTVVAL 260 (313)
Q Consensus 182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i~~~~~g~~~~~~~~y~g~-~~~~~l 260 (313)
-|.||++||++|+.+.+.+.+++.++.. .+.+..+| +.....++++.++|++++ +|.. .+.|. .+.+.|
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~--~~~~~~v~-~~~~a~~~~v~~vPti~i--~G~~-----~~~G~~~~~~~l 71 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGI--DAEFEKVT-DMNEILEAGVTATPGVAV--DGEL-----VIMGKIPSKEEI 71 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCC--CeEEEEeC-CHHHHHHcCCCcCCEEEE--CCEE-----EEEeccCCHHHH
Confidence 3789999999999999999999999865 58888777 223346899999999999 6654 47774 566778
Q ss_pred HHHH
Q 021368 261 YKFL 264 (313)
Q Consensus 261 ~~fi 264 (313)
.+++
T Consensus 72 ~~~l 75 (76)
T TIGR00412 72 KEIL 75 (76)
T ss_pred HHHh
Confidence 7776
No 130
>PTZ00051 thioredoxin; Provisional
Probab=99.03 E-value=6.5e-10 Score=81.22 Aligned_cols=88 Identities=20% Similarity=0.255 Sum_probs=71.3
Q ss_pred CCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCC
Q 021368 39 RENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGND 117 (313)
Q Consensus 39 ~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~ 117 (313)
.+++..+...+..+++.||++| ++|+.+.+.|.+++.++.+ +.|+.+|+++ +..++++|+|.++ |+++++..|
T Consensus 8 ~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~---~~~~~~~~~v~~~--Pt~~~~~~g 81 (98)
T PTZ00051 8 QAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVDE---LSEVAEKENITSM--PTFKVFKNG 81 (98)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECcc---hHHHHHHCCCcee--eEEEEEeCC
Confidence 4567777777778889999999 9999999999999999887 8999999998 5699999999998 999999766
Q ss_pred CCceeccCCCCCHHHHH
Q 021368 118 DAKKHILDGELTLDKIK 134 (313)
Q Consensus 118 ~~~~~~~~g~~~~~~i~ 134 (313)
. ....+.| ...+.|.
T Consensus 82 ~-~~~~~~G-~~~~~~~ 96 (98)
T PTZ00051 82 S-VVDTLLG-ANDEALK 96 (98)
T ss_pred e-EEEEEeC-CCHHHhh
Confidence 4 2334455 3445543
No 131
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.02 E-value=1.4e-09 Score=77.82 Aligned_cols=91 Identities=20% Similarity=0.280 Sum_probs=75.1
Q ss_pred cccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCC
Q 021368 41 NAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDA 119 (313)
Q Consensus 41 ~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~ 119 (313)
+|...+......+++|+++| +.|..+.+.|.+++.. .+.+.|+.+|++. +..+++.+++.++ |+++++..|.
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~---~~~~~~~~~v~~~--P~~~~~~~g~- 74 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDE---NPELAEEYGVRSI--PTFLFFKNGK- 74 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCC---ChhHHHhcCcccc--cEEEEEECCE-
Confidence 34555555567888999999 9999999999999999 5569999999998 5699999999988 9999998775
Q ss_pred ceeccCCCCCHHHHHHHHH
Q 021368 120 KKHILDGELTLDKIKTFGE 138 (313)
Q Consensus 120 ~~~~~~g~~~~~~i~~fi~ 138 (313)
....+.|..+.+.|.+|++
T Consensus 75 ~~~~~~g~~~~~~l~~~i~ 93 (93)
T cd02947 75 EVDRVVGADPKEELEEFLE 93 (93)
T ss_pred EEEEEecCCCHHHHHHHhC
Confidence 3455678788899988863
No 132
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.02 E-value=1.2e-09 Score=104.33 Aligned_cols=98 Identities=28% Similarity=0.465 Sum_probs=76.8
Q ss_pred cCcChHHHhh---cCCCcEEEEEeCCCCccchhhhHHH---HHHHHHhcCCCcEEEEEEeCCCccc------ccCCCCcC
Q 021368 166 VGNNFDEIVL---DESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGF 233 (313)
Q Consensus 166 ~~~~f~~~l~---~~~k~~lv~fy~~~C~~C~~~~~~~---~~la~~~~~~~~v~~~~vd~~~~~~------~~~~v~~~ 233 (313)
+.+++++.+. .++|+++|+||++||.+|+.+.+.+ .++.+.++ ++.+.++|++.++. +++++.++
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~---~~~~v~vDvt~~~~~~~~l~~~~~v~g~ 535 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA---DTVLLQADVTANNAEDVALLKHYNVLGL 535 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc---CCEEEEEECCCCChhhHHHHHHcCCCCC
Confidence 3466666663 3468999999999999999998865 56666664 47889999987642 57999999
Q ss_pred ceEEEEe-CCCCCcCceeeccCcCHHHHHHHHHhc
Q 021368 234 PTILFFP-AGNKSFDPINVDVDRTVVALYKFLKKN 267 (313)
Q Consensus 234 P~i~~~~-~g~~~~~~~~y~g~~~~~~l~~fi~~~ 267 (313)
|++++|+ +|+.+ +..++.|..+.+.+.+++++.
T Consensus 536 Pt~~~~~~~G~~i-~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 536 PTILFFDAQGQEI-PDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred CEEEEECCCCCCc-ccccccCCCCHHHHHHHHHHh
Confidence 9999996 56653 234788999999999999875
No 133
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.98 E-value=1.1e-08 Score=78.49 Aligned_cols=111 Identities=19% Similarity=0.256 Sum_probs=85.5
Q ss_pred CceEEeCCCcccc-cccCCCccEEEEEeeC------CchhhhhHHHHHHHHhccCe-EEEEEEeCCCcccccchhhhhCC
Q 021368 32 PLVTIFTRENAPS-VFESPIKNQLLLFAVS------NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDVGKPVSEYFGI 103 (313)
Q Consensus 32 ~~v~~lt~~~~~~-~~~~~~~~~v~f~~~~------~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~~~~~~l~~~~~v 103 (313)
+.+.+|+.+++.. .=..+ .+=|+.+.+. ..-..+...++++|++|+++ +.|+++|.++. ..+.+.|||
T Consensus 2 ~~~~~l~~~~~~~~~C~~~-~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~---~~~~~~fgl 77 (130)
T cd02983 2 PEIIELTSEDVFEETCEEK-QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQ---LDLEEALNI 77 (130)
T ss_pred CceEEecCHHHHHhhccCC-CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCccc---HHHHHHcCC
Confidence 4577888766532 33233 3444444443 23467899999999999999 99999999994 469999999
Q ss_pred CCCCCcEEEEEcCCCCceec-cCCCCCHHHHHHHHHHHhcCCCCC
Q 021368 104 TGEAPKVLAYTGNDDAKKHI-LDGELTLDKIKTFGEDFLEGKLKP 147 (313)
Q Consensus 104 ~~~~~P~i~~~~~~~~~~~~-~~g~~~~~~i~~fi~~~~~~~~~~ 147 (313)
.+...|++++++.... +|. +.|..+.++|.+|+.+++.|++..
T Consensus 78 ~~~~~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~Gkl~~ 121 (130)
T cd02983 78 GGFGYPAMVAINFRKM-KFATLKGSFSEDGINEFLRELSYGRGPT 121 (130)
T ss_pred CccCCCEEEEEecccC-ccccccCccCHHHHHHHHHHHHcCCccc
Confidence 8755699999988654 676 789999999999999999998854
No 134
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.98 E-value=1.5e-09 Score=82.48 Aligned_cols=101 Identities=12% Similarity=0.122 Sum_probs=76.7
Q ss_pred ceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcc--------cccchhhhhCC
Q 021368 33 LVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED--------VGKPVSEYFGI 103 (313)
Q Consensus 33 ~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~--------~~~~l~~~~~v 103 (313)
.+..++.+.+.+.+..+...+|+|+++| ++|+.+.|.|.+++.+ .++.|++||.+... ...++.+.+++
T Consensus 7 ~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i 84 (122)
T TIGR01295 7 GLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGI 84 (122)
T ss_pred cceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCCccCcCcccHHHHHHHHHHcCC
Confidence 4566777888888888878899999999 9999999999999998 33678888887421 01245566654
Q ss_pred ----CCCCCcEEEEEcCCCCceeccCC-CCCHHHHHHHHH
Q 021368 104 ----TGEAPKVLAYTGNDDAKKHILDG-ELTLDKIKTFGE 138 (313)
Q Consensus 104 ----~~~~~P~i~~~~~~~~~~~~~~g-~~~~~~i~~fi~ 138 (313)
.+. |+++++.+|..... ..| ..+.++|.+|+.
T Consensus 85 ~~~i~~~--PT~v~~k~Gk~v~~-~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 85 PTSFMGT--PTFVHITDGKQVSV-RCGSSTTAQELQDIAA 121 (122)
T ss_pred cccCCCC--CEEEEEeCCeEEEE-EeCCCCCHHHHHHHhh
Confidence 446 99999998874433 345 678999999874
No 135
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=3.6e-09 Score=86.93 Aligned_cols=97 Identities=11% Similarity=0.137 Sum_probs=78.0
Q ss_pred CCCccccccc--CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEE
Q 021368 38 TRENAPSVFE--SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYT 114 (313)
Q Consensus 38 t~~~~~~~~~--~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~ 114 (313)
++.+|+.-+. ..+.++|.|++.| ++|++++|+|..+|.+|.+ ..|.+||.+++. ..+..+||.+. ||+++|
T Consensus 8 ~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-aVFlkVdVd~c~---~taa~~gV~am--PTFiff 81 (288)
T KOG0908|consen 8 SDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-AVFLKVDVDECR---GTAATNGVNAM--PTFIFF 81 (288)
T ss_pred CcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc-cEEEEEeHHHhh---chhhhcCcccC--ceEEEE
Confidence 3444554332 2335567799999 9999999999999999988 899999999965 88999999999 999999
Q ss_pred cCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368 115 GNDDAKKHILDGELTLDKIKTFGEDFLE 142 (313)
Q Consensus 115 ~~~~~~~~~~~g~~~~~~i~~fi~~~~~ 142 (313)
.++. ++..--..+...|+..+.++++
T Consensus 82 ~ng~--kid~~qGAd~~gLe~kv~~~~s 107 (288)
T KOG0908|consen 82 RNGV--KIDQIQGADASGLEEKVAKYAS 107 (288)
T ss_pred ecCe--EeeeecCCCHHHHHHHHHHHhc
Confidence 9875 3333334788999999999876
No 136
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.92 E-value=3.5e-09 Score=98.53 Aligned_cols=87 Identities=15% Similarity=0.258 Sum_probs=67.9
Q ss_pred hcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeC----------------------------CCccc-
Q 021368 175 LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG----------------------------TTNEH- 225 (313)
Q Consensus 175 ~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~----------------------------~~~~~- 225 (313)
+..+++++|+|||+||++|+.++|.+.+++.+++.. ++.+..|.. +.+..
T Consensus 53 lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~-~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~l 131 (521)
T PRK14018 53 LKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS-SANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTL 131 (521)
T ss_pred ccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC-CeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHH
Confidence 347899999999999999999999999999988743 355544432 11111
Q ss_pred -ccCCCCcCceEEEE-eCCCCCcCceeeccCcCHHHHHHHHH
Q 021368 226 -HRAKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLK 265 (313)
Q Consensus 226 -~~~~v~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~ 265 (313)
..|++.++|+++++ ++|+.+. .+.|..+.+.|..+|.
T Consensus 132 ak~fgV~giPTt~IIDkdGkIV~---~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 132 AQSLNISVYPSWAIIGKDGDVQR---IVKGSISEAQALALIR 170 (521)
T ss_pred HHHcCCCCcCeEEEEcCCCeEEE---EEeCCCCHHHHHHHHH
Confidence 56899999999776 6676654 7889999999999998
No 137
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.92 E-value=4e-09 Score=80.74 Aligned_cols=100 Identities=14% Similarity=0.181 Sum_probs=79.0
Q ss_pred cccccCC-CccEEEEEeeC-CchhhhhHHHH---HHHHhccCeEEEEEEeCCCcc----------cccchhhhhCCCCCC
Q 021368 43 PSVFESP-IKNQLLLFAVS-NDSEKLLPVFE---EAAKSFKGKLIFVYVQMDNED----------VGKPVSEYFGITGEA 107 (313)
Q Consensus 43 ~~~~~~~-~~~~v~f~~~~-~~c~~~~~~~~---~~a~~~~~~v~f~~vd~~~~~----------~~~~l~~~~~v~~~~ 107 (313)
......+ .+.+|.|+++| ++|+.+.+.+. .+...+.+.+.++.||.+... ....++.+|+|.++
T Consensus 7 ~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~- 85 (125)
T cd02951 7 AEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFT- 85 (125)
T ss_pred HHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccc-
Confidence 3344555 78899999999 99999999885 577777667889999987631 03578999999988
Q ss_pred CcEEEEEcCC-CCceeccCCCCCHHHHHHHHHHHhcCC
Q 021368 108 PKVLAYTGND-DAKKHILDGELTLDKIKTFGEDFLEGK 144 (313)
Q Consensus 108 ~P~i~~~~~~-~~~~~~~~g~~~~~~i~~fi~~~~~~~ 144 (313)
|++++++++ +.....+.|..+.+.+..+++.++++.
T Consensus 86 -Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~~ 122 (125)
T cd02951 86 -PTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEKA 122 (125)
T ss_pred -cEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhhh
Confidence 999999886 445556789999999999999987643
No 138
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.92 E-value=8.2e-10 Score=82.78 Aligned_cols=84 Identities=20% Similarity=0.386 Sum_probs=59.1
Q ss_pred cCCCcEEEEEeCCCCccchhhhHHHHHHHH---HhcCCCcEEEEEEeCCCcc----------------------cccCCC
Q 021368 176 DESKDVLLEIYAPWCGHCQAFEPTYNKLAK---HLRGVDSIVIAKMDGTTNE----------------------HHRAKS 230 (313)
Q Consensus 176 ~~~k~~lv~fy~~~C~~C~~~~~~~~~la~---~~~~~~~v~~~~vd~~~~~----------------------~~~~~v 230 (313)
.++++++++|+++||+.|+.+.+.+..... .++. ++.+..+++.... ...+++
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD--DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV 80 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC--ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc--CeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC
Confidence 467899999999999999999999886544 3333 5677777776532 156899
Q ss_pred CcCceEEEEe-CCCCCcCceeeccCcCHHHHHHHH
Q 021368 231 DGFPTILFFP-AGNKSFDPINVDVDRTVVALYKFL 264 (313)
Q Consensus 231 ~~~P~i~~~~-~g~~~~~~~~y~g~~~~~~l~~fi 264 (313)
.++|+++++. +|+.+. .+.|..+.++|.++|
T Consensus 81 ~gtPt~~~~d~~G~~v~---~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 81 NGTPTIVFLDKDGKIVY---RIPGYLSPEELLKML 112 (112)
T ss_dssp -SSSEEEECTTTSCEEE---EEESS--HHHHHHHH
T ss_pred CccCEEEEEcCCCCEEE---EecCCCCHHHHHhhC
Confidence 9999999995 566553 788999999998875
No 139
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.91 E-value=9.1e-09 Score=72.42 Aligned_cols=78 Identities=17% Similarity=0.128 Sum_probs=67.1
Q ss_pred EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHH
Q 021368 53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLD 131 (313)
Q Consensus 53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~ 131 (313)
+.+|+++| ++|+.+.+.+.+++..+++.+.+..||+++ ++.+++++|+.++ |++++ +|. ..+.|..+.+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~v--Pt~~~--~g~---~~~~G~~~~~ 72 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVME---NPQKAMEYGIMAV--PAIVI--NGD---VEFIGAPTKE 72 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCcc---CHHHHHHcCCccC--CEEEE--CCE---EEEecCCCHH
Confidence 56799999 999999999999999998889999999987 5699999999999 99865 332 3567888999
Q ss_pred HHHHHHHHH
Q 021368 132 KIKTFGEDF 140 (313)
Q Consensus 132 ~i~~fi~~~ 140 (313)
.|.+++.+.
T Consensus 73 ~l~~~l~~~ 81 (82)
T TIGR00411 73 ELVEAIKKR 81 (82)
T ss_pred HHHHHHHhh
Confidence 999988764
No 140
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.91 E-value=7.9e-09 Score=81.47 Aligned_cols=86 Identities=13% Similarity=0.186 Sum_probs=60.9
Q ss_pred CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCc----------cc---ccC---CCCcCceEEEEeC
Q 021368 178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN----------EH---HRA---KSDGFPTILFFPA 241 (313)
Q Consensus 178 ~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~----------~~---~~~---~v~~~P~i~~~~~ 241 (313)
++..+|+||++||++|+..+|.+.+++++++- .+..+.+|.... .. ..+ ++.++|+.+++..
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~--~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~ 127 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFGL--PVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV 127 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcCC--cEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence 55679999999999999999999999988742 343334443210 01 123 6789999999965
Q ss_pred -CCCCcCceeeccCcCHHHHHHHHHhc
Q 021368 242 -GNKSFDPINVDVDRTVVALYKFLKKN 267 (313)
Q Consensus 242 -g~~~~~~~~y~g~~~~~~l~~fi~~~ 267 (313)
|..+ ...+.|..+.+.|.+.|.+.
T Consensus 128 ~G~~i--~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 128 NTRKA--YPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred CCCEE--EEEeecccCHHHHHHHHHHh
Confidence 4432 12577888999888888764
No 141
>PHA02125 thioredoxin-like protein
Probab=98.89 E-value=4.7e-09 Score=72.65 Aligned_cols=67 Identities=16% Similarity=0.351 Sum_probs=50.4
Q ss_pred EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeecc-CcCHH
Q 021368 182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDV-DRTVV 258 (313)
Q Consensus 182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g-~~~~~ 258 (313)
+++||++||++|+.+.+.+.+++ +.++.+|.+.+.. .+|++.++|+++ .|..+. .+.| ..+..
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~--------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~---~~~G~~~~~~ 67 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE--------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLD---RFTGVPRNVA 67 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh--------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEE---EEeCCCCcHH
Confidence 78999999999999999987652 4577888877655 789999999987 454443 6777 34445
Q ss_pred HHHH
Q 021368 259 ALYK 262 (313)
Q Consensus 259 ~l~~ 262 (313)
.|.+
T Consensus 68 ~l~~ 71 (75)
T PHA02125 68 ELKE 71 (75)
T ss_pred HHHH
Confidence 5544
No 142
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=98.88 E-value=8.1e-09 Score=76.91 Aligned_cols=102 Identities=24% Similarity=0.320 Sum_probs=80.3
Q ss_pred eEEeCCCcccccccCCCccEEEEEee----C-CchhhhhHHHHHHHHhcc-CeEEEEEEeCCCcccccchhhhhCCCCCC
Q 021368 34 VTIFTRENAPSVFESPIKNQLLLFAV----S-NDSEKLLPVFEEAAKSFK-GKLIFVYVQMDNEDVGKPVSEYFGITGEA 107 (313)
Q Consensus 34 v~~lt~~~~~~~~~~~~~~~v~f~~~----~-~~c~~~~~~~~~~a~~~~-~~v~f~~vd~~~~~~~~~l~~~~~v~~~~ 107 (313)
|.++|.++...++..+ .++.+|+- . ...+.+...+.++|++|+ |++.|+.+|.+++. ...+.||+....
T Consensus 1 v~~~~~en~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~---~~l~~fgl~~~~ 75 (111)
T cd03073 1 VGHRTKDNRAQFTKKP--LVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFS---HELEEFGLDFSG 75 (111)
T ss_pred CCeeccchHHHhccCC--eEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHH---HHHHHcCCCccc
Confidence 3567888888776543 34444433 3 556789999999999999 79999999999844 688999999744
Q ss_pred --CcEEEEEcCCCCceeccCCCC-CHHHHHHHHHHHh
Q 021368 108 --PKVLAYTGNDDAKKHILDGEL-TLDKIKTFGEDFL 141 (313)
Q Consensus 108 --~P~i~~~~~~~~~~~~~~g~~-~~~~i~~fi~~~~ 141 (313)
.|++++.+.+. .+|.+.+.. +.++|.+|+.+++
T Consensus 76 ~~~P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f~ 111 (111)
T cd03073 76 GEKPVVAIRTAKG-KKYVMEEEFSDVDALEEFLEDFF 111 (111)
T ss_pred CCCCEEEEEeCCC-CccCCCcccCCHHHHHHHHHHhC
Confidence 69999987654 677778888 9999999999863
No 143
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.88 E-value=1e-08 Score=84.06 Aligned_cols=102 Identities=14% Similarity=0.092 Sum_probs=79.7
Q ss_pred cCCCceEEeCCCccccccc-CC--CccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCC
Q 021368 29 NKLPLVTIFTRENAPSVFE-SP--IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGIT 104 (313)
Q Consensus 29 ~~~~~v~~lt~~~~~~~~~-~~--~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~ 104 (313)
.....|.+++..+|...+. .+ ..++|.||++| ++|+.+.|.|.++|.+|.. +.|+.||++. .+..|++.
T Consensus 79 ~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~-vkFvkI~ad~------~~~~~~i~ 151 (192)
T cd02988 79 SKFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD-TKFVKIISTQ------CIPNYPDK 151 (192)
T ss_pred CCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC-CEEEEEEhHH------hHhhCCCC
Confidence 3467899999998886543 22 35677899999 9999999999999999976 9999999975 25789999
Q ss_pred CCCCcEEEEEcCCCCcee-----ccCC-CCCHHHHHHHHHH
Q 021368 105 GEAPKVLAYTGNDDAKKH-----ILDG-ELTLDKIKTFGED 139 (313)
Q Consensus 105 ~~~~P~i~~~~~~~~~~~-----~~~g-~~~~~~i~~fi~~ 139 (313)
.. ||+++|.+|..... .+.| ..+.+.|..++.+
T Consensus 152 ~l--PTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 152 NL--PTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred CC--CEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 88 99999998863211 1223 5788888887765
No 144
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.87 E-value=8.1e-09 Score=89.33 Aligned_cols=89 Identities=13% Similarity=0.113 Sum_probs=66.4
Q ss_pred CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCc-----------ccccCCCCcCceEEEEeC-CCC
Q 021368 177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-----------EHHRAKSDGFPTILFFPA-GNK 244 (313)
Q Consensus 177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-----------~~~~~~v~~~P~i~~~~~-g~~ 244 (313)
.+++++|+||++||++|+.+.|.+.+++.++.- .+..+.+|.... ....++|.++|+++++.. |+.
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~--~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGI--EVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ 242 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcCc--EEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence 368999999999999999999999999999842 344444443221 115889999999999986 554
Q ss_pred CcCceeeccCcCHHHHHHHHHhcCC
Q 021368 245 SFDPINVDVDRTVVALYKFLKKNAS 269 (313)
Q Consensus 245 ~~~~~~y~g~~~~~~l~~fi~~~~~ 269 (313)
+. ....|..+.+.|.+.|...+.
T Consensus 243 v~--~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 243 FT--PIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EE--EEEeCCCCHHHHHHHHHHHhc
Confidence 31 235577899999998877643
No 145
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.84 E-value=1.4e-08 Score=77.03 Aligned_cols=69 Identities=22% Similarity=0.354 Sum_probs=53.5
Q ss_pred hcCCCcEEEEEeCCCCccchhhhHH-H--HHHHHHhcCCCcEEEEEEeCCCccc--c--------cCCCCcCceEEEEe-
Q 021368 175 LDESKDVLLEIYAPWCGHCQAFEPT-Y--NKLAKHLRGVDSIVIAKMDGTTNEH--H--------RAKSDGFPTILFFP- 240 (313)
Q Consensus 175 ~~~~k~~lv~fy~~~C~~C~~~~~~-~--~~la~~~~~~~~v~~~~vd~~~~~~--~--------~~~v~~~P~i~~~~- 240 (313)
...+|+++|+|+++||+.|+.|... | .+++..+.. ++.++.+|.+.... + .+++.++|+++++.
T Consensus 12 k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~--~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~ 89 (124)
T cd02955 12 RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE--NFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTP 89 (124)
T ss_pred HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC--CEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence 4678999999999999999999764 3 356666654 68999999887653 1 25889999999994
Q ss_pred CCCCC
Q 021368 241 AGNKS 245 (313)
Q Consensus 241 ~g~~~ 245 (313)
+|+.+
T Consensus 90 ~G~~~ 94 (124)
T cd02955 90 DLKPF 94 (124)
T ss_pred CCCEE
Confidence 56654
No 146
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.81 E-value=4.1e-08 Score=79.47 Aligned_cols=104 Identities=19% Similarity=0.291 Sum_probs=76.6
Q ss_pred CCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc---------------
Q 021368 160 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--------------- 224 (313)
Q Consensus 160 ~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~--------------- 224 (313)
..+..++++.+.-... .+++++|+||++||+.|+...+.+.++..++.+. .+.+..++++...
T Consensus 44 ~~~~~~~g~~~~l~~~-~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~-~~~vi~i~~d~~~~~~~~~~~~~~~~~~ 121 (173)
T PRK03147 44 FVLTDLEGKKIELKDL-KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK-GVEIIAVNVDETELAVKNFVNRYGLTFP 121 (173)
T ss_pred cEeecCCCCEEeHHHc-CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC-CeEEEEEEcCCCHHHHHHHHHHhCCCce
Confidence 3455566655543222 4688999999999999999999999999999764 4777777765321
Q ss_pred -------c--ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhc
Q 021368 225 -------H--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 267 (313)
Q Consensus 225 -------~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~ 267 (313)
. +.+++..+|+++++..+..+ ...+.|..+.+.+.+++.+.
T Consensus 122 ~~~d~~~~~~~~~~v~~~P~~~lid~~g~i--~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 122 VAIDKGRQVIDAYGVGPLPTTFLIDKDGKV--VKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred EEECCcchHHHHcCCCCcCeEEEECCCCcE--EEEEeCCCCHHHHHHHHHHh
Confidence 1 57899999999999644432 12678888999999988753
No 147
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.81 E-value=4e-08 Score=74.64 Aligned_cols=104 Identities=9% Similarity=0.130 Sum_probs=84.2
Q ss_pred ceEEeCCCcccccccCCCccEEEEEeeC----CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcccccchhhhhCCCCCC
Q 021368 33 LVTIFTRENAPSVFESPIKNQLLLFAVS----NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEA 107 (313)
Q Consensus 33 ~v~~lt~~~~~~~~~~~~~~~v~f~~~~----~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~~~~~l~~~~~v~~~~ 107 (313)
....++..+++........ .|+|+..+ +.+....=++.+++.+|.+ ++.|+.||++. ++.++.+|||.+.
T Consensus 18 g~~~~~~~~~~~~~~~~~~-~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~---~~~LA~~fgV~si- 92 (132)
T PRK11509 18 GWTPVSESRLDDWLTQAPD-GVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ---SEAIGDRFGVFRF- 92 (132)
T ss_pred CCCccccccHHHHHhCCCc-EEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCC---CHHHHHHcCCccC-
Confidence 4555666788887766644 44455444 6788889999999999985 59999999999 6799999999999
Q ss_pred CcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcC
Q 021368 108 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG 143 (313)
Q Consensus 108 ~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~ 143 (313)
|++++|++|+. .-.+.|.++.+.+.++|.+++..
T Consensus 93 -PTLl~FkdGk~-v~~i~G~~~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 93 -PATLVFTGGNY-RGVLNGIHPWAELINLMRGLVEP 126 (132)
T ss_pred -CEEEEEECCEE-EEEEeCcCCHHHHHHHHHHHhcC
Confidence 99999998863 33467889999999999999874
No 148
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.79 E-value=2.7e-08 Score=81.54 Aligned_cols=85 Identities=21% Similarity=0.317 Sum_probs=63.5
Q ss_pred cCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-------------------------ccCCC
Q 021368 176 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-------------------------HRAKS 230 (313)
Q Consensus 176 ~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-------------------------~~~~v 230 (313)
..+++++|+||++||++|+..+|.+.++..+ ++.+..++.+.... ..|++
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~-----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 140 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGV 140 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc-----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCC
Confidence 3578999999999999999999999988642 35555565433210 25688
Q ss_pred CcCceEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368 231 DGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNA 268 (313)
Q Consensus 231 ~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~ 268 (313)
.++|+.+++ ++|..+. .+.|..+.+.|.++|...+
T Consensus 141 ~~~P~t~vid~~G~i~~---~~~G~~~~~~l~~~i~~~~ 176 (185)
T PRK15412 141 YGAPETFLIDGNGIIRY---RHAGDLNPRVWESEIKPLW 176 (185)
T ss_pred CcCCeEEEECCCceEEE---EEecCCCHHHHHHHHHHHH
Confidence 999987777 4665543 7778888888888887775
No 149
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.78 E-value=4.8e-08 Score=79.18 Aligned_cols=86 Identities=23% Similarity=0.295 Sum_probs=63.3
Q ss_pred cCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC-----------------------c--ccccCCC
Q 021368 176 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-----------------------N--EHHRAKS 230 (313)
Q Consensus 176 ~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~-----------------------~--~~~~~~v 230 (313)
..+++++|+||++||++|+.+.+.+.+++.. ++.+..++.+. + ....|++
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v 135 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD-----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGV 135 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc-----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCC
Confidence 3578999999999999999999999888653 24444444321 1 1145788
Q ss_pred CcCceEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368 231 DGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS 269 (313)
Q Consensus 231 ~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~ 269 (313)
.++|+.+++ ++|+.+. .+.|..+.+.|.++|.+.+.
T Consensus 136 ~~~P~~~~id~~G~i~~---~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 136 YGAPETFLVDGNGVILY---RHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred eeCCeEEEEcCCceEEE---EEeccCCHHHHHHHHHHHhh
Confidence 899977777 5666543 67788899999999988763
No 150
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.77 E-value=2.6e-08 Score=72.26 Aligned_cols=66 Identities=24% Similarity=0.498 Sum_probs=50.1
Q ss_pred CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc---------------------------ccCCC
Q 021368 178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---------------------------HRAKS 230 (313)
Q Consensus 178 ~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~---------------------------~~~~v 230 (313)
+|+++|+||++||++|+...+.+.++.++++....+.++.+..+.... ..+++
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 578999999999999999999999999999944478888888776421 12377
Q ss_pred CcCceEEEEeCCC
Q 021368 231 DGFPTILFFPAGN 243 (313)
Q Consensus 231 ~~~P~i~~~~~g~ 243 (313)
.++|+++++..+.
T Consensus 81 ~~iP~~~lld~~G 93 (95)
T PF13905_consen 81 NGIPTLVLLDPDG 93 (95)
T ss_dssp TSSSEEEEEETTS
T ss_pred CcCCEEEEECCCC
Confidence 7888888886543
No 151
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.77 E-value=2.7e-08 Score=76.88 Aligned_cols=68 Identities=26% Similarity=0.499 Sum_probs=52.9
Q ss_pred CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCC-CcEEEEEEeCCCcc--------------------------c-ccC
Q 021368 177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNE--------------------------H-HRA 228 (313)
Q Consensus 177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~--------------------------~-~~~ 228 (313)
.+++++|+||++||++|+..++.+.++...+++. ..+.+..++++... . ..|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 4689999999999999999999999999988764 24666666555431 1 358
Q ss_pred CCCcCceEEEEeCCCC
Q 021368 229 KSDGFPTILFFPAGNK 244 (313)
Q Consensus 229 ~v~~~P~i~~~~~g~~ 244 (313)
++.++|+++++..+.+
T Consensus 96 ~v~~iPt~~lid~~G~ 111 (132)
T cd02964 96 KVEGIPTLVVLKPDGD 111 (132)
T ss_pred CCCCCCEEEEECCCCC
Confidence 8999999999964443
No 152
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.76 E-value=2.8e-08 Score=76.64 Aligned_cols=68 Identities=28% Similarity=0.525 Sum_probs=52.7
Q ss_pred CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCC-CcEEEEEEeCCCcc-----------------------c---ccCC
Q 021368 177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNE-----------------------H---HRAK 229 (313)
Q Consensus 177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~-----------------------~---~~~~ 229 (313)
.+++++|+||++||++|+.+++.+.++...++.. .++.+..++.+... . ..|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 4689999999999999999999999999988753 24656655555331 1 4689
Q ss_pred CCcCceEEEEe-CCCC
Q 021368 230 SDGFPTILFFP-AGNK 244 (313)
Q Consensus 230 v~~~P~i~~~~-~g~~ 244 (313)
+.++|+++++. +|..
T Consensus 97 v~~~P~~~lid~~G~i 112 (131)
T cd03009 97 IEGIPTLIILDADGEV 112 (131)
T ss_pred CCCCCEEEEECCCCCE
Confidence 99999999996 4443
No 153
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.74 E-value=1.4e-07 Score=71.68 Aligned_cols=104 Identities=14% Similarity=0.118 Sum_probs=84.7
Q ss_pred EEcCcChHHHhhcCCCcEEEEEeCC--CCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEE
Q 021368 164 IVVGNNFDEIVLDESKDVLLEIYAP--WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF 239 (313)
Q Consensus 164 ~l~~~~f~~~l~~~~k~~lv~fy~~--~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~ 239 (313)
.++..+++.++. .....+|+|-.. .++.+.-..-++.+++..|.+. .+.++++|++.+.. .+|+|.++||+++|
T Consensus 21 ~~~~~~~~~~~~-~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~-~v~~akVDiD~~~~LA~~fgV~siPTLl~F 98 (132)
T PRK11509 21 PVSESRLDDWLT-QAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDY-TWQVAIADLEQSEAIGDRFGVFRFPATLVF 98 (132)
T ss_pred ccccccHHHHHh-CCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCC-ceEEEEEECCCCHHHHHHcCCccCCEEEEE
Confidence 466688888873 445566666542 3566777788899999999642 59999999999987 89999999999999
Q ss_pred eCCCCCcCceeeccCcCHHHHHHHHHhcCCCCc
Q 021368 240 PAGNKSFDPINVDVDRTVVALYKFLKKNASIPF 272 (313)
Q Consensus 240 ~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~ 272 (313)
++|+.+. .+.|..+.+.+.+||.+.++.+.
T Consensus 99 kdGk~v~---~i~G~~~k~~l~~~I~~~L~~~~ 128 (132)
T PRK11509 99 TGGNYRG---VLNGIHPWAELINLMRGLVEPQQ 128 (132)
T ss_pred ECCEEEE---EEeCcCCHHHHHHHHHHHhcCcC
Confidence 9999886 88899999999999999976543
No 154
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.73 E-value=3e-08 Score=74.50 Aligned_cols=68 Identities=21% Similarity=0.240 Sum_probs=58.0
Q ss_pred CCccEEEEEe-------eC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcc----cccchhhhhCCC-CCCCcEEEEEc
Q 021368 49 PIKNQLLLFA-------VS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED----VGKPVSEYFGIT-GEAPKVLAYTG 115 (313)
Q Consensus 49 ~~~~~v~f~~-------~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~----~~~~l~~~~~v~-~~~~P~i~~~~ 115 (313)
+.+.+|.||+ +| ++|+.+.|.+++++.++.+.+.|+.||.++.. .+..+..+++|. +. ||++++.
T Consensus 21 ~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~i--PT~~~~~ 98 (119)
T cd02952 21 GKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGV--PTLLRWK 98 (119)
T ss_pred CCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCC--CEEEEEc
Confidence 5578889999 99 99999999999999999977999999997621 145888999998 88 9999996
Q ss_pred CCC
Q 021368 116 NDD 118 (313)
Q Consensus 116 ~~~ 118 (313)
+++
T Consensus 99 ~~~ 101 (119)
T cd02952 99 TPQ 101 (119)
T ss_pred CCc
Confidence 553
No 155
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.73 E-value=7.8e-09 Score=84.31 Aligned_cols=102 Identities=23% Similarity=0.381 Sum_probs=90.1
Q ss_pred CCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEE
Q 021368 160 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL 237 (313)
Q Consensus 160 ~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~ 237 (313)
..++.++.+++...+ ...+++.|+++||+.|+...+.|...+..-.+- .+.++.+|++.|.. =+|-++..|+|+
T Consensus 24 s~~~~~~eenw~~~l---~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL-~v~va~VDvt~npgLsGRF~vtaLptIY 99 (248)
T KOG0913|consen 24 SKLTRIDEENWKELL---TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDL-GVKVAKVDVTTNPGLSGRFLVTALPTIY 99 (248)
T ss_pred ceeEEecccchhhhh---chHHHHHhcCCCCccccchHHHHhccCCccCCC-ceeEEEEEEEeccccceeeEEEecceEE
Confidence 468889999999987 457999999999999999999999998876653 69999999999987 588999999999
Q ss_pred EEeCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368 238 FFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 269 (313)
Q Consensus 238 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~ 269 (313)
-.++|... +|.|.++..+++.|+...--
T Consensus 100 HvkDGeFr----rysgaRdk~dfisf~~~r~w 127 (248)
T KOG0913|consen 100 HVKDGEFR----RYSGARDKNDFISFEEHREW 127 (248)
T ss_pred Eeeccccc----cccCcccchhHHHHHHhhhh
Confidence 99999885 89999999999999987643
No 156
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.72 E-value=3.2e-08 Score=77.14 Aligned_cols=68 Identities=18% Similarity=0.303 Sum_probs=52.1
Q ss_pred CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCC------CcEEEEEEeCCCccc-------------------------
Q 021368 177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV------DSIVIAKMDGTTNEH------------------------- 225 (313)
Q Consensus 177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~------~~v~~~~vd~~~~~~------------------------- 225 (313)
.+++++|+|||+||++|+..+|.+.++..++++. ..+.+..|+.+.+..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 4789999999999999999999999998877542 247777777664311
Q ss_pred --ccCCCCcCceEEEEeCCCC
Q 021368 226 --HRAKSDGFPTILFFPAGNK 244 (313)
Q Consensus 226 --~~~~v~~~P~i~~~~~g~~ 244 (313)
..|++.++|+.+++.....
T Consensus 104 l~~~y~v~~iPt~vlId~~G~ 124 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGD 124 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCc
Confidence 2457789999999964433
No 157
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.70 E-value=4.6e-08 Score=66.01 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=47.1
Q ss_pred EEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEE
Q 021368 181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF 238 (313)
Q Consensus 181 ~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~ 238 (313)
-+++|+++||++|+.+.+.+.+++.... ++.+..+|.+.+.. .++++.++|++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~---~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP---NISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC---ceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 4788999999999999999999987542 58899999887764 7899999999876
No 158
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.69 E-value=5.6e-08 Score=74.53 Aligned_cols=77 Identities=21% Similarity=0.337 Sum_probs=55.5
Q ss_pred CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCC-----------------------Ccc--cccCCCC
Q 021368 177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-----------------------TNE--HHRAKSD 231 (313)
Q Consensus 177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~-----------------------~~~--~~~~~v~ 231 (313)
.+++++|+||++||+.|+.+.+.+.+++..+. +.++.++.+ ... ...|++.
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~----~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~ 99 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR----VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVY 99 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC----cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCC
Confidence 47899999999999999999999999987752 445544432 111 1468999
Q ss_pred cCceEEEE-eCCCCCcCceeeccCcCHHHH
Q 021368 232 GFPTILFF-PAGNKSFDPINVDVDRTVVAL 260 (313)
Q Consensus 232 ~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l 260 (313)
++|+.+++ ++|..+. .+.|..+.+.|
T Consensus 100 ~~P~~~~ld~~G~v~~---~~~G~~~~~~~ 126 (127)
T cd03010 100 GVPETFLIDGDGIIRY---KHVGPLTPEVW 126 (127)
T ss_pred CCCeEEEECCCceEEE---EEeccCChHhc
Confidence 99977666 5666543 67787776543
No 159
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.69 E-value=1.1e-07 Score=72.32 Aligned_cols=92 Identities=25% Similarity=0.353 Sum_probs=63.0
Q ss_pred EEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCC---------------------
Q 021368 163 KIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT--------------------- 221 (313)
Q Consensus 163 ~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~--------------------- 221 (313)
..++++.+..... .+++++|+||++||+.|+.+.+.+..+++.+. +....+|-.
T Consensus 6 ~~~~g~~~~~~~~-~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (123)
T cd03011 6 TTLDGEQFDLESL-SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP----VVSVALRSGDDGAVARFMQKKGYGFPVIND 80 (123)
T ss_pred ecCCCCEeeHHHh-CCCEEEEEEECCcChhhhhhChHHHHHHhhCC----EEEEEccCCCHHHHHHHHHHcCCCccEEEC
Confidence 3455555555443 45899999999999999999999999887632 222222211
Q ss_pred Cc--ccccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHH
Q 021368 222 TN--EHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYK 262 (313)
Q Consensus 222 ~~--~~~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~ 262 (313)
.+ ....|++.++|+++++.++.... .+.|..+.+.|.+
T Consensus 81 ~~~~~~~~~~i~~~P~~~vid~~gi~~---~~~g~~~~~~~~~ 120 (123)
T cd03011 81 PDGVISARWGVSVTPAIVIVDPGGIVF---VTTGVTSEWGLRL 120 (123)
T ss_pred CCcHHHHhCCCCcccEEEEEcCCCeEE---EEeccCCHHHHHh
Confidence 11 11578999999999997666432 6778778777754
No 160
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.67 E-value=8.8e-08 Score=71.36 Aligned_cols=66 Identities=26% Similarity=0.531 Sum_probs=54.9
Q ss_pred CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCc-----------------------cc--ccCCCCc
Q 021368 178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-----------------------EH--HRAKSDG 232 (313)
Q Consensus 178 ~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-----------------------~~--~~~~v~~ 232 (313)
+++++|+||++||+.|+...+.+.++...+.. ..+.++.++++.. .. ..|++.+
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKD-DGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCC-CCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 78999999999999999999999999999863 3688888888874 22 5778889
Q ss_pred CceEEEEe-CCCC
Q 021368 233 FPTILFFP-AGNK 244 (313)
Q Consensus 233 ~P~i~~~~-~g~~ 244 (313)
+|+++++. +|..
T Consensus 98 ~P~~~l~d~~g~v 110 (116)
T cd02966 98 LPTTFLIDRDGRI 110 (116)
T ss_pred cceEEEECCCCcE
Confidence 99999995 4443
No 161
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.66 E-value=5.6e-08 Score=99.03 Aligned_cols=89 Identities=15% Similarity=0.281 Sum_probs=71.1
Q ss_pred CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeC---CC------------------------cc--ccc
Q 021368 177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG---TT------------------------NE--HHR 227 (313)
Q Consensus 177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~---~~------------------------~~--~~~ 227 (313)
.+++++|+|||+||++|+...|.+.++.+++++. .+.+..+.+ +. +. ...
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~-~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~ 497 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ-PFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRE 497 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC-CeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHh
Confidence 4789999999999999999999999999999764 466665632 11 00 046
Q ss_pred CCCCcCceEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368 228 AKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS 269 (313)
Q Consensus 228 ~~v~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~ 269 (313)
|++.++|+++++ ++|+.+. ++.|....+.|.++|.+.+.
T Consensus 498 ~~V~~iPt~ilid~~G~iv~---~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 498 LGVSSWPTFAVVSPNGKLIA---QLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred cCCCccceEEEECCCCeEEE---EEecccCHHHHHHHHHHHHH
Confidence 789999999999 6777654 68898888999999988864
No 162
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=3.9e-08 Score=79.20 Aligned_cols=93 Identities=19% Similarity=0.284 Sum_probs=74.8
Q ss_pred CCCeEEE-cCcChHHHhh-cCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCC---
Q 021368 159 DGDVKIV-VGNNFDEIVL-DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSD--- 231 (313)
Q Consensus 159 ~~~v~~l-~~~~f~~~l~-~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~--- 231 (313)
+..++.+ +++.+++.+. +..+.|+|.||+.|.+.|..+.|.|.+++.+|... ++.||++|+..... .+|+|+
T Consensus 123 pe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~-~lkFGkvDiGrfpd~a~kfris~s~ 201 (265)
T KOG0914|consen 123 PETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNN-LLKFGKVDIGRFPDVAAKFRISLSP 201 (265)
T ss_pred chheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCC-CCcccceeeccCcChHHheeeccCc
Confidence 4567888 5666666663 33467999999999999999999999999999765 79999999999877 677664
Q ss_pred ---cCceEEEEeCCCCCc-Cceeec
Q 021368 232 ---GFPTILFFPAGNKSF-DPINVD 252 (313)
Q Consensus 232 ---~~P~i~~~~~g~~~~-~~~~y~ 252 (313)
..||+++|.+|+++. +|..+.
T Consensus 202 ~srQLPT~ilFq~gkE~~RrP~vd~ 226 (265)
T KOG0914|consen 202 GSRQLPTYILFQKGKEVSRRPDVDV 226 (265)
T ss_pred ccccCCeEEEEccchhhhcCccccc
Confidence 679999999998864 444444
No 163
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.61 E-value=3.3e-07 Score=68.89 Aligned_cols=89 Identities=17% Similarity=0.128 Sum_probs=69.0
Q ss_pred hcCCCcEEEEEeCCCCccchhhhHH-H--HHHHHHhcCCCcEEEEEEeCCCccc----ccCCCCcCceEEEEeC--CCCC
Q 021368 175 LDESKDVLLEIYAPWCGHCQAFEPT-Y--NKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTILFFPA--GNKS 245 (313)
Q Consensus 175 ~~~~k~~lv~fy~~~C~~C~~~~~~-~--~~la~~~~~~~~v~~~~vd~~~~~~----~~~~v~~~P~i~~~~~--g~~~ 245 (313)
...+|+++|+|+++||..|+.|... | ..+.+.+.. ++.+..+|.+..+. ..+++.++|+++++.. |..+
T Consensus 14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~--~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l 91 (114)
T cd02958 14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE--NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVL 91 (114)
T ss_pred HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh--CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEe
Confidence 3567999999999999999998654 4 455566655 68888888876433 5789999999999954 5544
Q ss_pred cCceeeccCcCHHHHHHHHHhcC
Q 021368 246 FDPINVDVDRTVVALYKFLKKNA 268 (313)
Q Consensus 246 ~~~~~y~g~~~~~~l~~fi~~~~ 268 (313)
. ++.|..+.+.|...|++..
T Consensus 92 ~---~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 92 K---VWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred E---EEcCCCCHHHHHHHHHHHH
Confidence 3 7889999999998887653
No 164
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.61 E-value=9.9e-08 Score=88.37 Aligned_cols=103 Identities=24% Similarity=0.392 Sum_probs=77.6
Q ss_pred EEEcCc-ChHHHhhcC-CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------ccCCCCcCc
Q 021368 163 KIVVGN-NFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFP 234 (313)
Q Consensus 163 ~~l~~~-~f~~~l~~~-~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------~~~~v~~~P 234 (313)
+.++.. .+++.+.+. .|+++|+|||+||..|+.+.+..-.-......-.++...+.|.+.++. +++++-+.|
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P 536 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVP 536 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCC
Confidence 445554 677766433 359999999999999999988765322222222369999999999876 589999999
Q ss_pred eEEEEeCCCCCcCceeeccCcCHHHHHHHHHhc
Q 021368 235 TILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 267 (313)
Q Consensus 235 ~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~ 267 (313)
++++|+.+.. .+....|-++.+.+.+++++.
T Consensus 537 ~~~ff~~~g~--e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 537 TYLFFGPQGS--EPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred EEEEECCCCC--cCcCCcceecHHHHHHHHHHh
Confidence 9999984444 233588999999999999875
No 165
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.60 E-value=2e-07 Score=66.57 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=58.6
Q ss_pred CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeeccCc
Q 021368 178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDR 255 (313)
Q Consensus 178 ~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~ 255 (313)
+...+..|+++||++|..+.+.+.+++..+. ++.+..+|.+.... .+++|.++|++++ +|.. .+.|..
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~---~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~-----~~~G~~ 81 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNP---NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGEL-----FGFGRM 81 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCC---CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEE-----EEeCCC
Confidence 3446888999999999999999999997753 58889999887764 7999999999975 6654 456755
Q ss_pred CHHHHH
Q 021368 256 TVVALY 261 (313)
Q Consensus 256 ~~~~l~ 261 (313)
+.++++
T Consensus 82 ~~~e~~ 87 (89)
T cd03026 82 TLEEIL 87 (89)
T ss_pred CHHHHh
Confidence 655543
No 166
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.59 E-value=6.2e-06 Score=71.52 Aligned_cols=240 Identities=15% Similarity=0.133 Sum_probs=155.9
Q ss_pred ccCCcccccCCCCCCHHHHHHHHHhcCCCceEEeCCCccccccc--CCCccEEEEEeeCCchhhhhHHHHHHHHhccCeE
Q 021368 4 KETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFE--SPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKL 81 (313)
Q Consensus 4 ~~~~~~~~y~~g~~~~~~l~~fi~~~~~~~v~~lt~~~~~~~~~--~~~~~~v~f~~~~~~c~~~~~~~~~~a~~~~~~v 81 (313)
..++..+.| +|.++..-|..||.....+.|..++.+.-.+.+. .....+|-+|.+.. ......|.++|..|...|
T Consensus 119 fkd~~~IEy-dG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~--s~~yk~FeeAAe~F~p~I 195 (383)
T PF01216_consen 119 FKDGEVIEY-DGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSED--SEHYKEFEEAAEHFQPYI 195 (383)
T ss_dssp EETTEEEEE--S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTT--SHHHHHHHHHHHHCTTTS
T ss_pred EECCcEEEe-cCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCCC--cHHHHHHHHHHHhhcCce
Confidence 357889999 9999999999999999988898888866333222 22355666777641 125667889999999989
Q ss_pred EEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceecc-CCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 021368 82 IFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHIL-DGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDG 160 (313)
Q Consensus 82 ~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~-~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~ 160 (313)
.|.++= ++.++++++++ . --+-|+++=...+..+ ....+.+.|.+||+++-. .
T Consensus 196 kFfAtf------d~~vAk~L~lK-~--nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~r-----------------p 249 (383)
T PF01216_consen 196 KFFATF------DKKVAKKLGLK-L--NEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKR-----------------P 249 (383)
T ss_dssp EEEEE-------SHHHHHHHT-S-T--T-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S------------------
T ss_pred eEEEEe------cchhhhhcCcc-c--cceeeeccccCCCccCCCCCCCHHHHHHHHHHhch-----------------h
Confidence 998853 45899999996 3 5666776543344444 345789999999999743 4
Q ss_pred CeEEEcCcChHHHhhcC-CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------ccCCCC-c
Q 021368 161 DVKIVVGNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSD-G 232 (313)
Q Consensus 161 ~v~~l~~~~f~~~l~~~-~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------~~~~v~-~ 232 (313)
.++.|+..++.+...+. +...+|.|-..--+.-..+..+++++|+....++.+.++-||-+..+. ..|+|. .
T Consensus 250 tlrkl~~~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~Idl~ 329 (383)
T PF01216_consen 250 TLRKLRPEDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGIDLS 329 (383)
T ss_dssp SEEE--GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT-TT
T ss_pred HhhhCChhhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCcccc
Confidence 57889999988877554 345666666666677789999999999999888889999999887765 345553 3
Q ss_pred CceEEEEeCCCCCcCceeec--c---CcCHHHHHHHHHhcCCCCccc
Q 021368 233 FPTILFFPAGNKSFDPINVD--V---DRTVVALYKFLKKNASIPFKI 274 (313)
Q Consensus 233 ~P~i~~~~~g~~~~~~~~y~--g---~~~~~~l~~fi~~~~~~~~~~ 274 (313)
-|.|-+..-... ..+-+. + ..+.+.|..||.+.++-++..
T Consensus 330 ~PqIGvVnvtda--dsvW~dm~d~~d~pt~~~LedWieDVlsg~i~~ 374 (383)
T PF01216_consen 330 RPQIGVVNVTDA--DSVWMDMDDDDDLPTAEELEDWIEDVLSGKINT 374 (383)
T ss_dssp S-EEEEEETTTS--EEEEC-STTTSS---HHHHHHHHHHHHCTCCTB
T ss_pred CCceeEEecccc--ccchhccCCcccCCcHHHHHHHHHHHhcCCCCC
Confidence 499988876554 333333 2 347899999999998766544
No 167
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.58 E-value=3.1e-06 Score=80.58 Aligned_cols=175 Identities=14% Similarity=0.087 Sum_probs=126.2
Q ss_pred ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCC
Q 021368 51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELT 129 (313)
Q Consensus 51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~ 129 (313)
++.+.+|.+. ..|.++...+++++.--.. +.+...+. . ... |++.+...+....+.|.|-..
T Consensus 20 ~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~-i~~~~~~~-------~-------~~~--p~~~~~~~~~~~~i~f~g~P~ 82 (517)
T PRK15317 20 PIELVASLDDSEKSAELKELLEEIASLSDK-ITVEEDSL-------D-------VRK--PSFSITRPGEDTGVRFAGIPM 82 (517)
T ss_pred CEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEccC-------C-------CCC--CEEEEEcCCccceEEEEecCc
Confidence 3445566666 7899999999999876644 66543221 1 224 888888766556788999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEcCcChHHHhhcCCCc-EEEEEeCCCCccchhhhHHHHHHHHHhc
Q 021368 130 LDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLR 208 (313)
Q Consensus 130 ~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~l~~~~k~-~lv~fy~~~C~~C~~~~~~~~~la~~~~ 208 (313)
-.++..||..++.-.- .-..|+.+.. +.+..-+++ .+..|++++|++|......+.+++...
T Consensus 83 g~Ef~s~i~~i~~~~~---------------~~~~l~~~~~-~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~- 145 (517)
T PRK15317 83 GHEFTSLVLALLQVGG---------------HPPKLDQEVI-EQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLN- 145 (517)
T ss_pred cHHHHHHHHHHHHhcC---------------CCCCCCHHHH-HHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC-
Confidence 9999999988865111 1122433333 334444444 588999999999999998888888753
Q ss_pred CCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368 209 GVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 268 (313)
Q Consensus 209 ~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~ 268 (313)
+++.+-.+|...++. .+|++.++|++++ ++.. .+.|....+.|+..+.+..
T Consensus 146 --~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~-----~~~g~~~~~~~~~~~~~~~ 198 (517)
T PRK15317 146 --PNITHTMIDGALFQDEVEARNIMAVPTVFL--NGEE-----FGQGRMTLEEILAKLDTGA 198 (517)
T ss_pred --CCceEEEEEchhCHhHHHhcCCcccCEEEE--CCcE-----EEecCCCHHHHHHHHhccc
Confidence 368888889888877 7999999999977 4543 7889888888888887754
No 168
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.57 E-value=4e-07 Score=69.14 Aligned_cols=69 Identities=14% Similarity=0.232 Sum_probs=47.9
Q ss_pred hcCCCcEEEEEeCCCCccchhhhHHHH---HHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEe-CCCCCc
Q 021368 175 LDESKDVLLEIYAPWCGHCQAFEPTYN---KLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFP-AGNKSF 246 (313)
Q Consensus 175 ~~~~k~~lv~fy~~~C~~C~~~~~~~~---~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~-~g~~~~ 246 (313)
...+|+++|+|++.||++|+.|...+. ++...++. ++..+.++.+..+. ...+ .++|+++|+. +|..+.
T Consensus 20 k~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~--~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~vi~ 94 (130)
T cd02960 20 KKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE--DFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLTVRA 94 (130)
T ss_pred HHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh--CeEEEEEEeccCCCCcCccC-cccCeEEEECCCCCCcc
Confidence 467899999999999999999988753 45555544 56666677653322 2233 6899999994 555443
No 169
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.56 E-value=2.7e-07 Score=69.20 Aligned_cols=40 Identities=18% Similarity=0.335 Sum_probs=32.8
Q ss_pred CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEE
Q 021368 177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM 218 (313)
Q Consensus 177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~v 218 (313)
.+++++|+||++||++|+.+.+.+.+++..+.+ .+.+..+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~--~~~vi~v 59 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD--WLDVVLA 59 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC--CcEEEEE
Confidence 478999999999999999999999999888755 3444433
No 170
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.53 E-value=5.8e-07 Score=72.28 Aligned_cols=84 Identities=10% Similarity=0.138 Sum_probs=61.0
Q ss_pred EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc----------c-----ccCCC--CcCceEEEEeCCCC
Q 021368 182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE----------H-----HRAKS--DGFPTILFFPAGNK 244 (313)
Q Consensus 182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----------~-----~~~~v--~~~P~i~~~~~g~~ 244 (313)
+|+||++||++|+..+|.+.++++++. +.+..++.+... . ..|++ .++|+.+++....+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g----~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~ 148 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG----FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTL 148 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC----CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCc
Confidence 888999999999999999999999974 333334433221 0 24563 69999999954443
Q ss_pred CcCceeeccCcCHHHHHHHHHhcCCC
Q 021368 245 SFDPINVDVDRTVVALYKFLKKNASI 270 (313)
Q Consensus 245 ~~~~~~y~g~~~~~~l~~fi~~~~~~ 270 (313)
+ ....+.|..+.+.|.+.|.+.+..
T Consensus 149 i-~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 149 E-ALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred E-EEEEEECCCCHHHHHHHHHHHHhh
Confidence 2 112688999999999999888754
No 171
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.50 E-value=6.3e-07 Score=76.98 Aligned_cols=111 Identities=21% Similarity=0.313 Sum_probs=79.8
Q ss_pred CCeEEEcC-cChHHHhhcCC--CcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-ccCCCCcCce
Q 021368 160 GDVKIVVG-NNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPT 235 (313)
Q Consensus 160 ~~v~~l~~-~~f~~~l~~~~--k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-~~~~v~~~P~ 235 (313)
+.|..|+. +.|.+.+.... ..++|+||.+.+..|..|...|..||.+|.. +.|++|....... ..|....+|+
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~---vKFvkI~a~~~~~~~~f~~~~LPt 201 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE---VKFVKIRASKCPASENFPDKNLPT 201 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT---SEEEEEEECGCCTTTTS-TTC-SE
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc---eEEEEEehhccCcccCCcccCCCE
Confidence 67888864 78888875433 4689999999999999999999999999875 8999988776544 7899999999
Q ss_pred EEEEeCCCCCcCceeec---c-CcCHHHHHHHHHhcCCCCcc
Q 021368 236 ILFFPAGNKSFDPINVD---V-DRTVVALYKFLKKNASIPFK 273 (313)
Q Consensus 236 i~~~~~g~~~~~~~~y~---g-~~~~~~l~~fi~~~~~~~~~ 273 (313)
|++|++|..+...+.+. | .++...|..||.++.-.+-+
T Consensus 202 llvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G~l~~k 243 (265)
T PF02114_consen 202 LLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYGVLPEK 243 (265)
T ss_dssp EEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTTSSS--
T ss_pred EEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcCCCCCc
Confidence 99999998765444443 2 45678999999999755443
No 172
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.47 E-value=1.4e-07 Score=66.48 Aligned_cols=64 Identities=27% Similarity=0.572 Sum_probs=49.5
Q ss_pred hcCCCcEEEEEeCCCCccchhhhHHH---HHHHHHhcCCCcEEEEEEeCCCccc-ccCCCCcCceEEEEe
Q 021368 175 LDESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTILFFP 240 (313)
Q Consensus 175 ~~~~k~~lv~fy~~~C~~C~~~~~~~---~~la~~~~~~~~v~~~~vd~~~~~~-~~~~v~~~P~i~~~~ 240 (313)
...+++++|+|+++||+.|+.+...+ .++...+.. ++....+|.+.... ..+...++|+++++.
T Consensus 14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~--~fv~v~vd~~~~~~~~~~~~~~~P~~~~ld 81 (82)
T PF13899_consen 14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK--NFVLVKVDVDDEDPNAQFDRQGYPTFFFLD 81 (82)
T ss_dssp HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH--CSEEEEEETTTHHHHHHHHHCSSSEEEEEE
T ss_pred HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC--CEEEEEEEcCCCChhHHhCCccCCEEEEeC
Confidence 45689999999999999999998887 445554554 68999999976654 223336799999985
No 173
>smart00594 UAS UAS domain.
Probab=98.45 E-value=1.8e-06 Score=65.68 Aligned_cols=94 Identities=16% Similarity=0.149 Sum_probs=68.5
Q ss_pred ChHHHh---hcCCCcEEEEEeCCCCccchhhhHHH---HHHHHHhcCCCcEEEEEEeCCCccc----ccCCCCcCceEEE
Q 021368 169 NFDEIV---LDESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTILF 238 (313)
Q Consensus 169 ~f~~~l---~~~~k~~lv~fy~~~C~~C~~~~~~~---~~la~~~~~~~~v~~~~vd~~~~~~----~~~~v~~~P~i~~ 238 (313)
+|++.+ ...+|.++|+|+++||..|..+...+ .++...+.. ++.+..+|....+. ..+++.++|++++
T Consensus 15 s~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~--~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~ 92 (122)
T smart00594 15 SLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE--NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAI 92 (122)
T ss_pred CHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc--CEEEEEecCCChhHHHHHHhcCcCCCCEEEE
Confidence 455544 45678999999999999999987653 345555654 68888889887665 5789999999999
Q ss_pred Ee-CCC-C-CcCceeeccCcCHHHHHHHH
Q 021368 239 FP-AGN-K-SFDPINVDVDRTVVALYKFL 264 (313)
Q Consensus 239 ~~-~g~-~-~~~~~~y~g~~~~~~l~~fi 264 (313)
+. .|. . ..-.-++.|..+.+.|+.++
T Consensus 93 l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 93 VDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 94 431 1 10112677999999998876
No 174
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.42 E-value=1.6e-05 Score=75.62 Aligned_cols=176 Identities=15% Similarity=0.143 Sum_probs=124.6
Q ss_pred ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCC
Q 021368 51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELT 129 (313)
Q Consensus 51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~ 129 (313)
++.+.+|.+. ..|+++...+++++.--. ++.+...+... ... |++.+...+....+.|.|-..
T Consensus 20 ~v~~~~~~~~~~~~~~~~~~~~~~~~~s~-ki~~~~~~~~~-------------~~~--p~~~~~~~~~~~~i~f~g~P~ 83 (515)
T TIGR03140 20 PVTLVLSAGSHEKSKELLELLDEIASLSD-KISLTQNTADT-------------LRK--PSFTILRDGADTGIRFAGIPG 83 (515)
T ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHhCC-CeEEEEecCCc-------------CCC--CeEEEecCCcccceEEEecCC
Confidence 3445556556 789999999998887654 47664433211 223 888887665555678899999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEcCcChHHHhhcCCCc-EEEEEeCCCCccchhhhHHHHHHHHHhc
Q 021368 130 LDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLR 208 (313)
Q Consensus 130 ~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~l~~~~k~-~lv~fy~~~C~~C~~~~~~~~~la~~~~ 208 (313)
-.++..|+..++.-.-. -..|+.+..+. +..-+++ .+..|+++.|++|......+..++....
T Consensus 84 g~Ef~s~i~~i~~~~~~---------------~~~l~~~~~~~-~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p 147 (515)
T TIGR03140 84 GHEFTSLVLAILQVGGH---------------GPKLDEGIIDR-IRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP 147 (515)
T ss_pred cHHHHHHHHHHHHhcCC---------------CCCCCHHHHHH-HHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC
Confidence 99999999987652111 12344444443 4444444 5889999999999988888888877643
Q ss_pred CCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368 209 GVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 268 (313)
Q Consensus 209 ~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~ 268 (313)
++..-.+|...++. .+|++.++|++++ ++.. .+.|......+.+.+.+..
T Consensus 148 ---~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~-----~~~g~~~~~~~~~~l~~~~ 199 (515)
T TIGR03140 148 ---NISHTMIDGALFQDEVEALGIQGVPAVFL--NGEE-----FHNGRMDLAELLEKLEETA 199 (515)
T ss_pred ---CceEEEEEchhCHHHHHhcCCcccCEEEE--CCcE-----EEecCCCHHHHHHHHhhcc
Confidence 57777789888876 7899999999987 4443 6888888888887776654
No 175
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.36 E-value=1.2e-06 Score=67.06 Aligned_cols=43 Identities=21% Similarity=0.404 Sum_probs=37.2
Q ss_pred CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeC
Q 021368 177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 220 (313)
Q Consensus 177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~ 220 (313)
.+++++|+||++||++|...++.+.++..++++. ++.+..+..
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~-~~~vi~i~~ 64 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD-GLVVIGVHS 64 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC-CeEEEEecc
Confidence 4689999999999999999999999999999864 577776654
No 176
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.36 E-value=5.1e-07 Score=67.46 Aligned_cols=88 Identities=14% Similarity=0.226 Sum_probs=63.4
Q ss_pred CCCccEEEEEeeC-CchhhhhHHHHH---HHHhccCeEEEEEEeCCCcc-----------------cccchhhhhCCCCC
Q 021368 48 SPIKNQLLLFAVS-NDSEKLLPVFEE---AAKSFKGKLIFVYVQMDNED-----------------VGKPVSEYFGITGE 106 (313)
Q Consensus 48 ~~~~~~v~f~~~~-~~c~~~~~~~~~---~a~~~~~~v~f~~vd~~~~~-----------------~~~~l~~~~~v~~~ 106 (313)
.+.+.+++|+++| +.|+.+.+.+.+ +...++..+.++.++++... .+.++.+.+||+++
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gt 83 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGT 83 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCcc
Confidence 4567788899999 999999888885 56667666888888887532 02468899999999
Q ss_pred CCcEEEEEcCCCCceeccCCCCCHHHHHHHH
Q 021368 107 APKVLAYTGNDDAKKHILDGELTLDKIKTFG 137 (313)
Q Consensus 107 ~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi 137 (313)
|++++++.++.....+.|..+.++|.+++
T Consensus 84 --Pt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 84 --PTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp --SEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred --CEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 99999975544445678999999998764
No 177
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.35 E-value=4.6e-06 Score=67.41 Aligned_cols=91 Identities=19% Similarity=0.311 Sum_probs=73.7
Q ss_pred CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCCcc-------------------cccchhhhhCCCCC
Q 021368 48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNED-------------------VGKPVSEYFGITGE 106 (313)
Q Consensus 48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~~-------------------~~~~l~~~~~v~~~ 106 (313)
.+...+|.||++| +.|+...+.+.++++++.+. +.++.|+++... ....+++.||+...
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 4456788899999 99999999999999999864 888888876421 14578899999988
Q ss_pred CCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021368 107 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF 140 (313)
Q Consensus 107 ~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~ 140 (313)
|++++++.++.....+.|..+.+++.+++.+.
T Consensus 140 --P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 140 --PTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred --CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 98888876665555678999999999998764
No 178
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.35 E-value=2.9e-06 Score=71.62 Aligned_cols=88 Identities=14% Similarity=0.050 Sum_probs=64.9
Q ss_pred CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCc------c--c------ccCC-------------
Q 021368 177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN------E--H------HRAK------------- 229 (313)
Q Consensus 177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~------~--~------~~~~------------- 229 (313)
.+++++|.||++||+.|...++.+.++..++++. ++.+..|+++.. . . .+++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~-Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G 176 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ-GFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNG 176 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC-CcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCc
Confidence 4689999999999999999999999999999865 577877876421 0 0 1111
Q ss_pred ---------------------CCcCceEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368 230 ---------------------SDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNA 268 (313)
Q Consensus 230 ---------------------v~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~ 268 (313)
+...|+.+++ ++|+.+. +|.|..+.+.|.+.|++.+
T Consensus 177 ~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~---~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 177 PSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVE---RYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred chhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEE---EECCCCCHHHHHHHHHHHh
Confidence 1123777777 4555554 7889888899999998875
No 179
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.33 E-value=2.2e-06 Score=57.67 Aligned_cols=55 Identities=4% Similarity=0.021 Sum_probs=48.1
Q ss_pred EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEE
Q 021368 53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAY 113 (313)
Q Consensus 53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~ 113 (313)
+++|+++| ++|+.+.+.+++++....+ +.|..+|.++ ++++.+++|+.+. |++++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~-i~~~~id~~~---~~~l~~~~~i~~v--Pti~i 58 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNPN-ISAEMIDAAE---FPDLADEYGVMSV--PAIVI 58 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCc-eEEEEEEccc---CHhHHHHcCCccc--CEEEE
Confidence 56789999 9999999999999887654 9999999988 5689999999988 99855
No 180
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=98.32 E-value=1.4e-06 Score=61.55 Aligned_cols=95 Identities=15% Similarity=0.289 Sum_probs=71.4
Q ss_pred CcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCC----CCCCcEE-EE
Q 021368 40 ENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGIT----GEAPKVL-AY 113 (313)
Q Consensus 40 ~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~----~~~~P~i-~~ 113 (313)
.+|.++...... ++.+|+.. ......+.+|.++|+..+|.-++.+|||.+.+ .+.||+++.|. .- |.. .=
T Consensus 10 KdfKKLLRTr~N-VLvLy~ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e-~kKLCKKlKv~~~~kp~--~~~LkH 85 (112)
T cd03067 10 KDFKKLLRTRNN-VLVLYSKSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSE-SRKLCKKLKVDPSSKPK--PVELKH 85 (112)
T ss_pred HHHHHHHhhcCc-EEEEEecchhhHHHHHHHHHHHHHHhcCceeEEEEecCChH-HHHHHHHHccCCCCCCC--cchhhc
Confidence 456667766544 44455555 77788888999999999999999999999866 88999999998 33 433 22
Q ss_pred EcCCCCceeccCCCCCHHHHHHHHHH
Q 021368 114 TGNDDAKKHILDGELTLDKIKTFGED 139 (313)
Q Consensus 114 ~~~~~~~~~~~~g~~~~~~i~~fi~~ 139 (313)
|..| ..+-.|+-..+..+|..|+.+
T Consensus 86 YKdG-~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 86 YKDG-DFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred ccCC-CccccccchhhHHHHHHHhhC
Confidence 3333 345567888999999999876
No 181
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.30 E-value=2.1e-06 Score=71.06 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=38.6
Q ss_pred CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 021368 177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 221 (313)
Q Consensus 177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~ 221 (313)
.+++++|.||++||++|...++.+.++..++++. ++.+..++++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~-g~~vvgv~~~ 81 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL-GLEILAFPTS 81 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC-ceEEEEecch
Confidence 4789999999999999999999999999999864 5788888763
No 182
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.30 E-value=4.1e-06 Score=68.86 Aligned_cols=84 Identities=17% Similarity=0.178 Sum_probs=54.8
Q ss_pred CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEe-------------CC-------CcccccCCCCcCceE
Q 021368 177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD-------------GT-------TNEHHRAKSDGFPTI 236 (313)
Q Consensus 177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd-------------~~-------~~~~~~~~v~~~P~i 236 (313)
.+++++|+||++||+.|+...|.+.++.+.... ++.++..| .+ ......|++..+|+.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~--~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~ 150 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEET--DVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG 150 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCC--cEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence 578999999999999999999999998765422 34443311 00 000146788999998
Q ss_pred EEEeCCCCCcCceeeccC-cCHHHHHHHHHh
Q 021368 237 LFFPAGNKSFDPINVDVD-RTVVALYKFLKK 266 (313)
Q Consensus 237 ~~~~~g~~~~~~~~y~g~-~~~~~l~~fi~~ 266 (313)
+++.....+ ++.|. ...+.+.+.++.
T Consensus 151 ~lID~~G~I----~~~g~~~~~~~le~ll~~ 177 (189)
T TIGR02661 151 VLLDQDGKI----RAKGLTNTREHLESLLEA 177 (189)
T ss_pred EEECCCCeE----EEccCCCCHHHHHHHHHH
Confidence 887543333 44553 345566666654
No 183
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.29 E-value=3e-06 Score=58.62 Aligned_cols=72 Identities=13% Similarity=0.122 Sum_probs=56.0
Q ss_pred EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCC-CCH
Q 021368 53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE-LTL 130 (313)
Q Consensus 53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~-~~~ 130 (313)
.|.||++| ++|+.+.|.|++++.++...+.|..||- ...+.++|+.+. |++++ +|. . .+.|. .+.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~------~~~a~~~~v~~v--Pti~i--~G~--~-~~~G~~~~~ 68 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVTD------MNEILEAGVTAT--PGVAV--DGE--L-VIMGKIPSK 68 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC------HHHHHHcCCCcC--CEEEE--CCE--E-EEEeccCCH
Confidence 36799999 9999999999999999998899988882 134778999988 99977 332 2 25664 455
Q ss_pred HHHHHHH
Q 021368 131 DKIKTFG 137 (313)
Q Consensus 131 ~~i~~fi 137 (313)
+.|.+++
T Consensus 69 ~~l~~~l 75 (76)
T TIGR00412 69 EEIKEIL 75 (76)
T ss_pred HHHHHHh
Confidence 7777665
No 184
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.28 E-value=6.4e-06 Score=77.05 Aligned_cols=90 Identities=17% Similarity=0.135 Sum_probs=71.1
Q ss_pred cccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeC----------------------------CCcccc
Q 021368 45 VFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQM----------------------------DNEDVG 94 (313)
Q Consensus 45 ~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~----------------------------~~~~~~ 94 (313)
....+++++|.||++| ++|+...|.|.+++++++. .+.|+.|.. +. +
T Consensus 52 ~lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~---~ 128 (521)
T PRK14018 52 YLKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDN---G 128 (521)
T ss_pred eccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccc---c
Confidence 3456677888899999 9999999999999999873 365655532 22 4
Q ss_pred cchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHH
Q 021368 95 KPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGED 139 (313)
Q Consensus 95 ~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~ 139 (313)
..+.+.|+|.++ |++++++.++.....+.|.++.++|..+|+.
T Consensus 129 ~~lak~fgV~gi--PTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 129 GTLAQSLNISVY--PSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred HHHHHHcCCCCc--CeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 578899999988 9887776655556667899999999999984
No 185
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.26 E-value=6.2e-06 Score=71.48 Aligned_cols=92 Identities=9% Similarity=0.009 Sum_probs=68.1
Q ss_pred CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCc------ccccchhhhhCCCCCCCcEEEEEcC-CCCc
Q 021368 49 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE------DVGKPVSEYFGITGEAPKVLAYTGN-DDAK 120 (313)
Q Consensus 49 ~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~------~~~~~l~~~~~v~~~~~P~i~~~~~-~~~~ 120 (313)
+...+|.||++| +.|+.+.|.+.+++.++.-.|..+.+|.... ..+..+++++||.+. |++++++. ++..
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~v--Ptl~Lv~~~~~~v 243 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTV--PAVFLADPDPNQF 243 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcC--CeEEEEECCCCEE
Confidence 346788899999 9999999999999999964444444444221 013468899999988 99999987 3333
Q ss_pred eeccCCCCCHHHHHHHHHHHhc
Q 021368 121 KHILDGELTLDKIKTFGEDFLE 142 (313)
Q Consensus 121 ~~~~~g~~~~~~i~~fi~~~~~ 142 (313)
.....|..+.+.|.+.+.....
T Consensus 244 ~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 244 TPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEEeCCCCHHHHHHHHHHHhc
Confidence 3334688999999999887643
No 186
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.26 E-value=4.4e-06 Score=80.06 Aligned_cols=90 Identities=6% Similarity=0.087 Sum_probs=72.7
Q ss_pred CCCccEEEEEeeC-CchhhhhHHH---HHHHHhccCeEEEEEEeCCCcc-cccchhhhhCCCCCCCcEEEEEcCCCCc--
Q 021368 48 SPIKNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDNED-VGKPVSEYFGITGEAPKVLAYTGNDDAK-- 120 (313)
Q Consensus 48 ~~~~~~v~f~~~~-~~c~~~~~~~---~~~a~~~~~~v~f~~vd~~~~~-~~~~l~~~~~v~~~~~P~i~~~~~~~~~-- 120 (313)
++++++|.||++| .+|+.+.+.. .++.+++++ +.++.+|.++.+ .+.+++++|++.+. |++++++.++..
T Consensus 473 ~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~-~~~v~vDvt~~~~~~~~l~~~~~v~g~--Pt~~~~~~~G~~i~ 549 (571)
T PRK00293 473 KGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD-TVLLQADVTANNAEDVALLKHYNVLGL--PTILFFDAQGQEIP 549 (571)
T ss_pred cCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC-CEEEEEECCCCChhhHHHHHHcCCCCC--CEEEEECCCCCCcc
Confidence 3567888999999 9999998875 678888876 889999998642 25689999999988 999999754322
Q ss_pred eeccCCCCCHHHHHHHHHHH
Q 021368 121 KHILDGELTLDKIKTFGEDF 140 (313)
Q Consensus 121 ~~~~~g~~~~~~i~~fi~~~ 140 (313)
..++.|..+.+++.+++++.
T Consensus 550 ~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 550 DARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred cccccCCCCHHHHHHHHHHh
Confidence 35678999999999999875
No 187
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.25 E-value=3.5e-05 Score=56.99 Aligned_cols=105 Identities=23% Similarity=0.373 Sum_probs=77.3
Q ss_pred CeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHH-HHhcCCCcEEEEEEeCCCccc-------ccCCC--
Q 021368 161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA-KHLRGVDSIVIAKMDGTTNEH-------HRAKS-- 230 (313)
Q Consensus 161 ~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la-~~~~~~~~v~~~~vd~~~~~~-------~~~~v-- 230 (313)
....|+.-+|++.| ..-+.++|-|=... +--.-...|.++| .......++.++.+-+..... ++|++
T Consensus 5 G~v~LD~~tFdKvi-~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k 81 (126)
T PF07912_consen 5 GCVPLDELTFDKVI-PKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK 81 (126)
T ss_dssp TSEEESTTHHHHHG-GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred ceeeccceehhhee-ccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence 35678999999988 45689999996543 2235567899999 555566689999998776543 57777
Q ss_pred CcCceEEEEeCCCCCcCceee--ccCcCHHHHHHHHHhcCCC
Q 021368 231 DGFPTILFFPAGNKSFDPINV--DVDRTVVALYKFLKKNASI 270 (313)
Q Consensus 231 ~~~P~i~~~~~g~~~~~~~~y--~g~~~~~~l~~fi~~~~~~ 270 (313)
..+|.+++|..+.. .|+.| .|..+.+.|.+|++++.+.
T Consensus 82 e~fPv~~LF~~~~~--~pv~~p~~~~~t~~~l~~fvk~~t~~ 121 (126)
T PF07912_consen 82 EDFPVIYLFVGDKE--EPVRYPFDGDVTADNLQRFVKSNTGL 121 (126)
T ss_dssp CC-SEEEEEESSTT--SEEEE-TCS-S-HHHHHHHHHHTSS-
T ss_pred ccCCEEEEecCCCC--CCccCCccCCccHHHHHHHHHhCCCe
Confidence 57899999995555 78999 8899999999999999763
No 188
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.19 E-value=2.5e-06 Score=64.32 Aligned_cols=95 Identities=16% Similarity=0.174 Sum_probs=63.0
Q ss_pred cccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCC-Cce-
Q 021368 45 VFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDD-AKK- 121 (313)
Q Consensus 45 ~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~-~~~- 121 (313)
....+++++|.|+++| ++|+.+.|.+.+.+........|+.||.+... ..+...|++.+-..|++++++.++ ..+
T Consensus 15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~--~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDE--EPKDEEFSPDGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCC--CchhhhcccCCCccceEEEECCCCCCchh
Confidence 3455668888999999 99999999999987755444456666666532 234578888862249999997443 221
Q ss_pred -eccCCCCCHHHHHHHHHHHh
Q 021368 122 -HILDGELTLDKIKTFGEDFL 141 (313)
Q Consensus 122 -~~~~g~~~~~~i~~fi~~~~ 141 (313)
+...|..+.+.+..++....
T Consensus 93 ~~~~~~~~~~~~f~~~~~~~~ 113 (117)
T cd02959 93 IINKKGNPNYKYFYSSAAQVT 113 (117)
T ss_pred hccCCCCccccccCCCHHHHH
Confidence 23345566665555555543
No 189
>PHA02125 thioredoxin-like protein
Probab=98.16 E-value=8.2e-06 Score=56.28 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=42.3
Q ss_pred EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEE
Q 021368 53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLA 112 (313)
Q Consensus 53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~ 112 (313)
+++|+++| ++|+.+.|.|.+++ +.++.||++. +++++++|+|.++ |+++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~---~~~l~~~~~v~~~--PT~~ 51 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDE---GVELTAKHHIRSL--PTLV 51 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCC---CHHHHHHcCCcee--CeEE
Confidence 67899999 99999999998764 4578888877 6699999999999 9986
No 190
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.16 E-value=1.6e-05 Score=64.28 Aligned_cols=88 Identities=16% Similarity=0.185 Sum_probs=63.9
Q ss_pred CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCc------cc-------------------------
Q 021368 177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN------EH------------------------- 225 (313)
Q Consensus 177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~------~~------------------------- 225 (313)
.+++++|+||++||+.|...++.+.++..++++. ++.+..+.++.. ..
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~-~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~ 102 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK-GVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVA 102 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC-CeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHH
Confidence 5789999999999999999999999999999753 577777776541 00
Q ss_pred ccCCCCcCceEEEEeCCCCCcCceeecc-----------CcCHHHHHHHHHhcCC
Q 021368 226 HRAKSDGFPTILFFPAGNKSFDPINVDV-----------DRTVVALYKFLKKNAS 269 (313)
Q Consensus 226 ~~~~v~~~P~i~~~~~g~~~~~~~~y~g-----------~~~~~~l~~fi~~~~~ 269 (313)
..|++...|+++++..+.++ .|.+ ..+...+..-|+..+.
T Consensus 103 ~~~~v~~~P~~~lid~~G~v----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 153 (171)
T cd02969 103 KAYGAACTPDFFLFDPDGKL----VYRGRIDDSRPGNDPPVTGRDLRAALDALLA 153 (171)
T ss_pred HHcCCCcCCcEEEECCCCeE----EEeecccCCcccccccccHHHHHHHHHHHHc
Confidence 24578889999999644443 3332 2355667777776653
No 191
>PLN02412 probable glutathione peroxidase
Probab=98.15 E-value=1.6e-05 Score=64.03 Aligned_cols=89 Identities=15% Similarity=0.085 Sum_probs=63.1
Q ss_pred CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC-------cc-c------ccCC-------------
Q 021368 177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-------NE-H------HRAK------------- 229 (313)
Q Consensus 177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~-------~~-~------~~~~------------- 229 (313)
.+++++|+||++||+.|...++.+.++..++++. ++.+..++++. .. . .+++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~-g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g 106 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ-GFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNG 106 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC-CcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCC
Confidence 4689999999999999999999999999999875 57777777632 10 0 1111
Q ss_pred ---------------------CCcCceEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368 230 ---------------------SDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS 269 (313)
Q Consensus 230 ---------------------v~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~ 269 (313)
+...|+.+++ ++|+.+. .+.|..+.+.|.+.|++.+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~---~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 107 KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQ---RYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEE---EECCCCCHHHHHHHHHHHHh
Confidence 1223666666 4444443 67788888888888887754
No 192
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=2.3e-05 Score=67.09 Aligned_cols=120 Identities=15% Similarity=0.306 Sum_probs=92.4
Q ss_pred CCCeEEEcCcChHHHhhcCCCc--EEEEEeC----CCCccchhhhHHHHHHHHHhcCC------CcEEEEEEeCCCccc-
Q 021368 159 DGDVKIVVGNNFDEIVLDESKD--VLLEIYA----PWCGHCQAFEPTYNKLAKHLRGV------DSIVIAKMDGTTNEH- 225 (313)
Q Consensus 159 ~~~v~~l~~~~f~~~l~~~~k~--~lv~fy~----~~C~~C~~~~~~~~~la~~~~~~------~~v~~~~vd~~~~~~- 225 (313)
+..|..++++.|..++....++ .+++|.| ..|.-|.+...++..+|..++.. .++-|+.||.++.+.
T Consensus 39 ~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~ 118 (331)
T KOG2603|consen 39 ESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQV 118 (331)
T ss_pred CCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHH
Confidence 4679999999999999755554 5677776 46999999999999999987643 158899999998776
Q ss_pred -ccCCCCcCceEEEEe-CCCCCcCceeecc---CcCHHHHHHHHHhcCCCCcc-ccCCC
Q 021368 226 -HRAKSDGFPTILFFP-AGNKSFDPINVDV---DRTVVALYKFLKKNASIPFK-IQKPT 278 (313)
Q Consensus 226 -~~~~v~~~P~i~~~~-~g~~~~~~~~y~g---~~~~~~l~~fi~~~~~~~~~-~~~~~ 278 (313)
+.+++.+.|++++|+ +.....++..+.+ ...++++.+|+.+....... +.+|+
T Consensus 119 Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v~si~rPp 177 (331)
T KOG2603|consen 119 FQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNVRSIQRPP 177 (331)
T ss_pred HHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhheeeeeecCC
Confidence 899999999999993 3222224445553 44689999999999887765 55554
No 193
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.14 E-value=5.9e-06 Score=64.86 Aligned_cols=68 Identities=19% Similarity=0.454 Sum_probs=50.8
Q ss_pred CCCcEEEEEeCC-CCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-----------------------ccCCCC-
Q 021368 177 ESKDVLLEIYAP-WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------HRAKSD- 231 (313)
Q Consensus 177 ~~k~~lv~fy~~-~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----------------------~~~~v~- 231 (313)
.+++++|.||++ ||++|...++.+.++.+.++.. ++.+..+..+.+.. ..+++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK-GVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC-ceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 578999999999 9999999999999999887764 35555554443211 345777
Q ss_pred --------cCceEEEEeCCCCC
Q 021368 232 --------GFPTILFFPAGNKS 245 (313)
Q Consensus 232 --------~~P~i~~~~~g~~~ 245 (313)
.+|+++++.....+
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~V 127 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGKV 127 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSBE
T ss_pred ccccccCCeecEEEEEECCCEE
Confidence 89999888655444
No 194
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.09 E-value=1.9e-05 Score=59.96 Aligned_cols=83 Identities=10% Similarity=0.087 Sum_probs=61.4
Q ss_pred CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCC-Cc-----------------ccccchhhhhCCCCCCC
Q 021368 48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMD-NE-----------------DVGKPVSEYFGITGEAP 108 (313)
Q Consensus 48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~-~~-----------------~~~~~l~~~~~v~~~~~ 108 (313)
.+...+|.||++| +.|..+.|.+..+++++.- +.+. +|.. .+ +.+..+++.|+|.+.
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~-i~i~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~-- 94 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYPV-VSVA-LRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVT-- 94 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhCCE-EEEE-ccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcc--
Confidence 4457888899999 9999999999999988431 2222 2211 00 114579999999988
Q ss_pred cEEEEEcCCCCceeccCCCCCHHHHHH
Q 021368 109 KVLAYTGNDDAKKHILDGELTLDKIKT 135 (313)
Q Consensus 109 P~i~~~~~~~~~~~~~~g~~~~~~i~~ 135 (313)
|++++++.++ ..+.+.|..+.+.|.+
T Consensus 95 P~~~vid~~g-i~~~~~g~~~~~~~~~ 120 (123)
T cd03011 95 PAIVIVDPGG-IVFVTTGVTSEWGLRL 120 (123)
T ss_pred cEEEEEcCCC-eEEEEeccCCHHHHHh
Confidence 9999998776 6777788888888864
No 195
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.09 E-value=1.3e-05 Score=59.46 Aligned_cols=66 Identities=29% Similarity=0.626 Sum_probs=55.4
Q ss_pred CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCC-Cccc--ccCC--CCcCceEEEEeCCCCC
Q 021368 178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-TNEH--HRAK--SDGFPTILFFPAGNKS 245 (313)
Q Consensus 178 ~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~-~~~~--~~~~--v~~~P~i~~~~~g~~~ 245 (313)
++++++.||++||++|+.+.+.+..++..+.. .+.+..+|.. .... ..++ +..+|++.++.++...
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 102 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG--DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEV 102 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC--CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchh
Confidence 67889999999999999999999999999986 5788888886 3333 5777 8899999988887654
No 196
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.09 E-value=1.9e-05 Score=62.62 Aligned_cols=43 Identities=16% Similarity=0.144 Sum_probs=37.8
Q ss_pred CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeC
Q 021368 177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 220 (313)
Q Consensus 177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~ 220 (313)
.+|+++|.||++||++|...++.+.++..++++. ++.+..+++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~-~~~v~~i~~ 63 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPS-HFNVLAFPC 63 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC-CeEEEEEec
Confidence 4688999999999999999999999999999864 578887875
No 197
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.05 E-value=2e-05 Score=60.25 Aligned_cols=81 Identities=16% Similarity=0.087 Sum_probs=59.1
Q ss_pred CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCc--------------------ccccchhhhhCCCCCC
Q 021368 49 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE--------------------DVGKPVSEYFGITGEA 107 (313)
Q Consensus 49 ~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~--------------------~~~~~l~~~~~v~~~~ 107 (313)
+...+|+||+.| +.|....|.+.++++++. +.|+.|+.++. +.+..+++.|++.+.
T Consensus 25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~- 101 (127)
T cd03010 25 GKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV- 101 (127)
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC-
Confidence 457788899999 999999999999998873 66666653210 014577888999988
Q ss_pred CcEEEEEcCCCCceeccCCCCCHHHH
Q 021368 108 PKVLAYTGNDDAKKHILDGELTLDKI 133 (313)
Q Consensus 108 ~P~i~~~~~~~~~~~~~~g~~~~~~i 133 (313)
|+.++++.++.....+.|.++.+.|
T Consensus 102 -P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 102 -PETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred -CeEEEECCCceEEEEEeccCChHhc
Confidence 9766776555456667788877654
No 198
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.04 E-value=3e-05 Score=57.45 Aligned_cols=75 Identities=17% Similarity=0.193 Sum_probs=58.7
Q ss_pred CCccEEEEEeeC-CchhhhhHHHHHHHHhcc-CeEEEEEEeCCCc--------------------ccccchhhhhCCCCC
Q 021368 49 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK-GKLIFVYVQMDNE--------------------DVGKPVSEYFGITGE 106 (313)
Q Consensus 49 ~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~-~~v~f~~vd~~~~--------------------~~~~~l~~~~~v~~~ 106 (313)
+...+++||+.| +.|+...+.+.++..++. ..+.|+.|+++.. +....+.+.||+.+.
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL 98 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence 457788899999 999999999999999996 3499999999873 002578899999987
Q ss_pred CCcEEEEEcCCCCceeccC
Q 021368 107 APKVLAYTGNDDAKKHILD 125 (313)
Q Consensus 107 ~~P~i~~~~~~~~~~~~~~ 125 (313)
|.+++++.++...+.+.
T Consensus 99 --P~~~l~d~~g~v~~~~~ 115 (116)
T cd02966 99 --PTTFLIDRDGRIRARHV 115 (116)
T ss_pred --ceEEEECCCCcEEEEec
Confidence 98888876554444443
No 199
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.03 E-value=1.6e-05 Score=60.31 Aligned_cols=76 Identities=14% Similarity=0.058 Sum_probs=57.2
Q ss_pred CCcccccccCCCccEEEEEeeC-CchhhhhH-HHH--HHHHhccCeEEEEEEeCCCcccccchhh--------hhCCCCC
Q 021368 39 RENAPSVFESPIKNQLLLFAVS-NDSEKLLP-VFE--EAAKSFKGKLIFVYVQMDNEDVGKPVSE--------YFGITGE 106 (313)
Q Consensus 39 ~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~-~~~--~~a~~~~~~v~f~~vd~~~~~~~~~l~~--------~~~v~~~ 106 (313)
++.+....+++++.+|.|+++| +.|+.+.+ +|. +++..+...+.++.+|.++ ++.+.+ .||+.++
T Consensus 5 ~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~---~~~~~~~~~~~~~~~~~~~G~ 81 (124)
T cd02955 5 EEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREE---RPDVDKIYMNAAQAMTGQGGW 81 (124)
T ss_pred HHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCc---CcHHHHHHHHHHHHhcCCCCC
Confidence 3445555667778889999999 99999976 343 5777777668999999877 445554 3588888
Q ss_pred CCcEEEEEcCCCC
Q 021368 107 APKVLAYTGNDDA 119 (313)
Q Consensus 107 ~~P~i~~~~~~~~ 119 (313)
|++++++.++.
T Consensus 82 --Pt~vfl~~~G~ 92 (124)
T cd02955 82 --PLNVFLTPDLK 92 (124)
T ss_pred --CEEEEECCCCC
Confidence 99999987653
No 200
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.03 E-value=5.4e-05 Score=59.75 Aligned_cols=89 Identities=11% Similarity=0.185 Sum_probs=62.4
Q ss_pred CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcc---------cccchh-hhh---CCCCCCCcEEEE
Q 021368 48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED---------VGKPVS-EYF---GITGEAPKVLAY 113 (313)
Q Consensus 48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~---------~~~~l~-~~~---~v~~~~~P~i~~ 113 (313)
.....+|.||++| ++|++..|.+.++++++. +.|..|+.+... ...... ..+ ++.+. |+.++
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~i--PTt~L 124 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVT--PATFL 124 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCC--CeEEE
Confidence 3445688899999 999999999999999985 444444544311 001233 345 78777 99888
Q ss_pred EcCCCCc-eeccCCCCCHHHHHHHHHHH
Q 021368 114 TGNDDAK-KHILDGELTLDKIKTFGEDF 140 (313)
Q Consensus 114 ~~~~~~~-~~~~~g~~~~~~i~~fi~~~ 140 (313)
++.++.. .....|..+.+.+.+.+.+.
T Consensus 125 ID~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 125 VNVNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred EeCCCCEEEEEeecccCHHHHHHHHHHh
Confidence 8776443 33568999999998888765
No 201
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.03 E-value=1.2e-05 Score=54.78 Aligned_cols=67 Identities=16% Similarity=0.272 Sum_probs=50.2
Q ss_pred EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------ccCCCCcCceEEEEeCCCCCcCceeeccCc
Q 021368 182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPTILFFPAGNKSFDPINVDVDR 255 (313)
Q Consensus 182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~ 255 (313)
+.+|+++||++|+.+.+.+.+. ++.+..+|++.+.. ..+++.++|++++. |. .+.| .
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~--------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~------~~~g-~ 64 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK--------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HK------IIVG-F 64 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC--------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CE------EEee-C
Confidence 5689999999999998877652 47778888877643 34788999999884 32 3555 5
Q ss_pred CHHHHHHHHH
Q 021368 256 TVVALYKFLK 265 (313)
Q Consensus 256 ~~~~l~~fi~ 265 (313)
+.+.|.+||+
T Consensus 65 ~~~~i~~~i~ 74 (74)
T TIGR02196 65 DPEKLDQLLE 74 (74)
T ss_pred CHHHHHHHhC
Confidence 7788888874
No 202
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.02 E-value=2e-05 Score=51.51 Aligned_cols=58 Identities=33% Similarity=0.686 Sum_probs=47.9
Q ss_pred EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-----ccCCCCcCceEEEEeCC
Q 021368 182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HRAKSDGFPTILFFPAG 242 (313)
Q Consensus 182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----~~~~v~~~P~i~~~~~g 242 (313)
+++||++||+.|..+.+.+.++ ..... ++.+..++++.... ..+++..+|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNK--GVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCC--CcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999998 32222 68999999888775 26688999999999876
No 203
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.01 E-value=3.8e-05 Score=54.77 Aligned_cols=71 Identities=14% Similarity=0.076 Sum_probs=56.1
Q ss_pred cEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCH
Q 021368 52 NQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTL 130 (313)
Q Consensus 52 ~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~ 130 (313)
.+.+|+++| +.|....+.+.+++..+.+ +.+..+|.++ .++++.+|||.+. |++++ + |. ..+.|..+.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~-i~~~~vd~~~---~~e~a~~~~V~~v--Pt~vi-d-G~---~~~~G~~~~ 83 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPN-IEHEMIDGAL---FQDEVEERGIMSV--PAIFL-N-GE---LFGFGRMTL 83 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCC-ceEEEEEhHh---CHHHHHHcCCccC--CEEEE-C-CE---EEEeCCCCH
Confidence 355678888 9999999999999988865 9999999988 5689999999998 99954 3 32 233576665
Q ss_pred HHH
Q 021368 131 DKI 133 (313)
Q Consensus 131 ~~i 133 (313)
+++
T Consensus 84 ~e~ 86 (89)
T cd03026 84 EEI 86 (89)
T ss_pred HHH
Confidence 554
No 204
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.01 E-value=2.7e-05 Score=53.77 Aligned_cols=71 Identities=17% Similarity=0.272 Sum_probs=52.6
Q ss_pred EEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-ccCCCCcCceEEEEeCCCCCcCceeecc-CcCHHHHH
Q 021368 184 EIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTILFFPAGNKSFDPINVDV-DRTVVALY 261 (313)
Q Consensus 184 ~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-~~~~v~~~P~i~~~~~g~~~~~~~~y~g-~~~~~~l~ 261 (313)
.+++++|+.|..+...+.+++..+. +.+-.+|...... .+|++.++|++++ +|.. .|.| ..+.+.|.
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~----i~~ei~~~~~~~~~~~ygv~~vPalvI--ng~~-----~~~G~~p~~~el~ 72 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG----IEVEIIDIEDFEEIEKYGVMSVPALVI--NGKV-----VFVGRVPSKEELK 72 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT----EEEEEEETTTHHHHHHTT-SSSSEEEE--TTEE-----EEESS--HHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC----CeEEEEEccCHHHHHHcCCCCCCEEEE--CCEE-----EEEecCCCHHHHH
Confidence 3478889999999999999988873 4445556544333 7899999999977 5553 7999 78899999
Q ss_pred HHHH
Q 021368 262 KFLK 265 (313)
Q Consensus 262 ~fi~ 265 (313)
+||.
T Consensus 73 ~~l~ 76 (76)
T PF13192_consen 73 ELLE 76 (76)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9884
No 205
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.99 E-value=5.8e-05 Score=56.56 Aligned_cols=93 Identities=16% Similarity=0.217 Sum_probs=73.5
Q ss_pred cCCCccEEEEEeeC-CchhhhhH-HH--HHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcC-CCCce
Q 021368 47 ESPIKNQLLLFAVS-NDSEKLLP-VF--EEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGN-DDAKK 121 (313)
Q Consensus 47 ~~~~~~~v~f~~~~-~~c~~~~~-~~--~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~-~~~~~ 121 (313)
+.++..+|+|+++| ..|+.+.. .| .++.+.++....+..+|.++.+ ...++..|++.++ |++++++. ++...
T Consensus 15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e-~~~~~~~~~~~~~--P~~~~i~~~~g~~l 91 (114)
T cd02958 15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSE-GQRFLQSYKVDKY--PHIAIIDPRTGEVL 91 (114)
T ss_pred hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCcc-HHHHHHHhCccCC--CeEEEEeCccCcEe
Confidence 45667788899999 89999866 45 3466777767888888887644 7789999999988 99999987 45455
Q ss_pred eccCCCCCHHHHHHHHHHHhc
Q 021368 122 HILDGELTLDKIKTFGEDFLE 142 (313)
Q Consensus 122 ~~~~g~~~~~~i~~fi~~~~~ 142 (313)
..+.|..+.+.+...+.+...
T Consensus 92 ~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 92 KVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred EEEcCCCCHHHHHHHHHHHHh
Confidence 667899999999988887653
No 206
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.97 E-value=0.00014 Score=53.76 Aligned_cols=108 Identities=14% Similarity=0.083 Sum_probs=75.7
Q ss_pred ceEEeCCCcccccccCCCccEEEEEeeCCchhhhhHHHHHHH-Hhcc--CeEEEEEEeCCCc--ccccchhhhhCCCCCC
Q 021368 33 LVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAA-KSFK--GKLIFVYVQMDNE--DVGKPVSEYFGITGEA 107 (313)
Q Consensus 33 ~v~~lt~~~~~~~~~~~~~~~v~f~~~~~~c~~~~~~~~~~a-~~~~--~~v~f~~vd~~~~--~~~~~l~~~~~v~~~~ 107 (313)
-...|+.-+|++++.+....+|.|=... +.-.-...|.++| +... ..+.++.|-..++ ..|.+|.++|+|..-.
T Consensus 5 G~v~LD~~tFdKvi~kf~~~LVKFD~ay-PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~ 83 (126)
T PF07912_consen 5 GCVPLDELTFDKVIPKFKYVLVKFDVAY-PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKED 83 (126)
T ss_dssp TSEEESTTHHHHHGGGSSEEEEEEEESS---CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC
T ss_pred ceeeccceehhheeccCceEEEEEeccC-CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCccc
Confidence 3568899999999988766666664443 3334455666667 3332 3588888887664 2489999999997655
Q ss_pred CcEEEEEcCCCCceecc--CCCCCHHHHHHHHHHHh
Q 021368 108 PKVLAYTGNDDAKKHIL--DGELTLDKIKTFGEDFL 141 (313)
Q Consensus 108 ~P~i~~~~~~~~~~~~~--~g~~~~~~i~~fi~~~~ 141 (313)
.|.+.+|.++...+..| .|+.+.++|+.|+....
T Consensus 84 fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t 119 (126)
T PF07912_consen 84 FPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNT 119 (126)
T ss_dssp -SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTS
T ss_pred CCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCC
Confidence 69999998777777777 89999999999998863
No 207
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=9.6e-06 Score=65.67 Aligned_cols=83 Identities=17% Similarity=0.169 Sum_probs=64.4
Q ss_pred ceEEeC-CCccccccc--CCCccEEEEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcccccchhhhhCCCCC-
Q 021368 33 LVTIFT-RENAPSVFE--SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGE- 106 (313)
Q Consensus 33 ~v~~lt-~~~~~~~~~--~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~~~~~l~~~~~v~~~- 106 (313)
.+..++ .+.++.... +...|+|.||+.| +.|.+..|.|.+++.+|.. .++||+||... .++...+|+|...
T Consensus 125 ~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGr---fpd~a~kfris~s~ 201 (265)
T KOG0914|consen 125 TIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGR---FPDVAAKFRISLSP 201 (265)
T ss_pred heeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeecc---CcChHHheeeccCc
Confidence 445553 333333332 3346788899999 9999999999999999996 59999999998 5699999999755
Q ss_pred ---CCcEEEEEcCCC
Q 021368 107 ---APKVLAYTGNDD 118 (313)
Q Consensus 107 ---~~P~i~~~~~~~ 118 (313)
.+||+.+|.+|.
T Consensus 202 ~srQLPT~ilFq~gk 216 (265)
T KOG0914|consen 202 GSRQLPTYILFQKGK 216 (265)
T ss_pred ccccCCeEEEEccch
Confidence 378998998776
No 208
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.94 E-value=5.9e-05 Score=54.63 Aligned_cols=88 Identities=19% Similarity=0.303 Sum_probs=64.0
Q ss_pred hHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceEEEEeCCCCCcCce
Q 021368 170 FDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPI 249 (313)
Q Consensus 170 f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i~~~~~g~~~~~~~ 249 (313)
+.++ ....+.++|-|+.++|+ .....|.++|..++. .+.|+.+.- ......+.+ ..|++++|+.... .++
T Consensus 10 l~~~-~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~--~~~F~~~~~-~~~~~~~~~-~~~~i~l~~~~~~--~~~ 79 (97)
T cd02981 10 LEKF-LDKDDVVVVGFFKDEES---EEYKTFEKVAESLRD--DYGFGHTSD-KEVAKKLKV-KPGSVVLFKPFEE--EPV 79 (97)
T ss_pred HHHH-hccCCeEEEEEECCCCc---HHHHHHHHHHHhccc--CCeEEEECh-HHHHHHcCC-CCCceEEeCCccc--CCc
Confidence 3443 45678888889988876 677889999999987 578877662 222244555 4589999976533 455
Q ss_pred eeccCcCHHHHHHHHHhc
Q 021368 250 NVDVDRTVVALYKFLKKN 267 (313)
Q Consensus 250 ~y~g~~~~~~l~~fi~~~ 267 (313)
.|.|..+.+.|.+||..+
T Consensus 80 ~y~g~~~~~~l~~fi~~~ 97 (97)
T cd02981 80 EYDGEFTEESLVEFIKDN 97 (97)
T ss_pred cCCCCCCHHHHHHHHHhC
Confidence 899988899999999754
No 209
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.94 E-value=3.5e-05 Score=62.38 Aligned_cols=83 Identities=6% Similarity=0.003 Sum_probs=52.9
Q ss_pred CCCcEEEEEeCCCCccchhhhHHHHHHHHH-hcCCCcEEEEEEeCCC-------------------------------cc
Q 021368 177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKH-LRGVDSIVIAKMDGTT-------------------------------NE 224 (313)
Q Consensus 177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~-~~~~~~v~~~~vd~~~-------------------------------~~ 224 (313)
.+|+++|.|||+||++|+.-+|.+.+++.+ +.-...-...-||.+. ..
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v 137 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAV 137 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchH
Confidence 389999999999999999999999999653 2110000002222221 11
Q ss_pred cccCCCCcCceE-EEE-eCCCCCcCceeeccCcCHHHHHH
Q 021368 225 HHRAKSDGFPTI-LFF-PAGNKSFDPINVDVDRTVVALYK 262 (313)
Q Consensus 225 ~~~~~v~~~P~i-~~~-~~g~~~~~~~~y~g~~~~~~l~~ 262 (313)
...+++.+.|+. +++ ++|.-+. .+.|..+.+.+.+
T Consensus 138 ~~~~gv~~~P~T~fVIDk~GkVv~---~~~G~l~~ee~e~ 174 (184)
T TIGR01626 138 KNAWQLNSEDSAIIVLDKTGKVKF---VKEGALSDSDIQT 174 (184)
T ss_pred HHhcCCCCCCceEEEECCCCcEEE---EEeCCCCHHHHHH
Confidence 136688899776 666 4555443 7778777665544
No 210
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.93 E-value=5.7e-05 Score=61.12 Aligned_cols=90 Identities=18% Similarity=0.086 Sum_probs=66.9
Q ss_pred CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCc--------------------ccccchhhhhCCCCC
Q 021368 48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE--------------------DVGKPVSEYFGITGE 106 (313)
Q Consensus 48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~--------------------~~~~~l~~~~~v~~~ 106 (313)
.+...+|.||++| ++|++..|.+.+++++ + +.++.|+.++. +.+..+.+.|++.+.
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~-~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~ 138 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD--G-LPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGA 138 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc--C-CEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeC
Confidence 4557888899999 9999999999998764 2 55555553221 013466778899887
Q ss_pred CCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368 107 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE 142 (313)
Q Consensus 107 ~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~ 142 (313)
|+.++++.++...+.+.|..+.+.+.+++.+++.
T Consensus 139 --P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 139 --PETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred --CeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 8766776655556777899999999999998874
No 211
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.91 E-value=5e-05 Score=63.52 Aligned_cols=84 Identities=18% Similarity=0.185 Sum_probs=60.1
Q ss_pred CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC---------cc--cccCCCCcCceEEEEeCCCCCc
Q 021368 178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT---------NE--HHRAKSDGFPTILFFPAGNKSF 246 (313)
Q Consensus 178 ~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~---------~~--~~~~~v~~~P~i~~~~~g~~~~ 246 (313)
++.-|++||.+.|+.|..+.|++..++.++.= .+..+.+|... +. .+++++..+|++++...+...
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~--~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~- 196 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYGF--SVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKK- 196 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHhCC--EEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCe-
Confidence 56779999999999999999999999999842 34444444221 11 157899999999999665532
Q ss_pred CceeeccCcCHHHHHHHH
Q 021368 247 DPINVDVDRTVVALYKFL 264 (313)
Q Consensus 247 ~~~~y~g~~~~~~l~~fi 264 (313)
-...-.|..+.+.|.+-|
T Consensus 197 ~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 197 WYPVSQGFMSLDELEDRI 214 (215)
T ss_pred EEEEeeecCCHHHHHHhh
Confidence 122445778888877644
No 212
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=97.91 E-value=8.6e-05 Score=60.78 Aligned_cols=90 Identities=10% Similarity=0.045 Sum_probs=67.1
Q ss_pred CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcc--------------------cccchhhhhCCCCC
Q 021368 48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED--------------------VGKPVSEYFGITGE 106 (313)
Q Consensus 48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~--------------------~~~~l~~~~~v~~~ 106 (313)
.++..+|.||+.| ++|++..|.+.+++.+ + +.|+.|+.++.. ....+...||+.+.
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~-~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~ 143 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--G-IRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA 143 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--C-CEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcC
Confidence 4556788899999 9999999999998753 3 666677643321 01234567899888
Q ss_pred CCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368 107 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE 142 (313)
Q Consensus 107 ~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~ 142 (313)
|+.++++.++...+.+.|..+.+.+...+...+.
T Consensus 144 --P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 144 --PETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred --CeEEEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 8777777665566777899999999999988875
No 213
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.86 E-value=3.9e-05 Score=52.89 Aligned_cols=54 Identities=26% Similarity=0.440 Sum_probs=38.7
Q ss_pred EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--cc-----CCCCcCceEEEEeCCCC
Q 021368 182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HR-----AKSDGFPTILFFPAGNK 244 (313)
Q Consensus 182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~-----~~v~~~P~i~~~~~g~~ 244 (313)
++.||++||++|+.+.+.+.+++ +.+-.+|++.+.. .. ++..++|++ ++.+|..
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~--------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~ 62 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG--------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSF 62 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC--------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeE
Confidence 67899999999999999887663 3344577765544 22 378899997 4666643
No 214
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=97.85 E-value=4.5e-05 Score=54.99 Aligned_cols=66 Identities=26% Similarity=0.413 Sum_probs=50.3
Q ss_pred CccEEEEEeeC-CchhhhhHHHHHHHHhcc--CeEEEEEEeCCCcc----------------------cccchhhhhCCC
Q 021368 50 IKNQLLLFAVS-NDSEKLLPVFEEAAKSFK--GKLIFVYVQMDNED----------------------VGKPVSEYFGIT 104 (313)
Q Consensus 50 ~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~--~~v~f~~vd~~~~~----------------------~~~~l~~~~~v~ 104 (313)
+..+++|++.| ++|....|.+.++.++++ +.+.|+.|.+++.. ....+.+.|+|.
T Consensus 2 K~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~ 81 (95)
T PF13905_consen 2 KPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGIN 81 (95)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-T
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCC
Confidence 46788899999 899999999999999999 56999999887642 124466777888
Q ss_pred CCCCcEEEEEcCC
Q 021368 105 GEAPKVLAYTGND 117 (313)
Q Consensus 105 ~~~~P~i~~~~~~ 117 (313)
+. |++++++.+
T Consensus 82 ~i--P~~~lld~~ 92 (95)
T PF13905_consen 82 GI--PTLVLLDPD 92 (95)
T ss_dssp SS--SEEEEEETT
T ss_pred cC--CEEEEECCC
Confidence 77 888777654
No 215
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.82 E-value=6.9e-05 Score=56.10 Aligned_cols=66 Identities=23% Similarity=0.432 Sum_probs=44.3
Q ss_pred cCCCcEEEEEeC-------CCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc--------c---ccCCCCcCceEE
Q 021368 176 DESKDVLLEIYA-------PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--------H---HRAKSDGFPTIL 237 (313)
Q Consensus 176 ~~~k~~lv~fy~-------~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~--------~---~~~~v~~~P~i~ 237 (313)
+++++++|+|++ +||+.|....|.+.+.-..... +..++.+.+..-. . +.++++++||++
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~--~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi 94 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE--NARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLI 94 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST--TEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEE
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC--CceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEE
Confidence 345788999985 5999999999999998877554 5677666664422 1 258999999999
Q ss_pred EEeCCC
Q 021368 238 FFPAGN 243 (313)
Q Consensus 238 ~~~~g~ 243 (313)
-|..+.
T Consensus 95 ~~~~~~ 100 (119)
T PF06110_consen 95 RWETGE 100 (119)
T ss_dssp ECTSS-
T ss_pred EECCCC
Confidence 997763
No 216
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=97.82 E-value=6.7e-05 Score=57.67 Aligned_cols=69 Identities=17% Similarity=0.211 Sum_probs=52.6
Q ss_pred CCCccEEEEEeeC-CchhhhhHHHHHHHHhccC---eEEEEEEeCCCcc---------------------cccchhhhhC
Q 021368 48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNED---------------------VGKPVSEYFG 102 (313)
Q Consensus 48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~---~v~f~~vd~~~~~---------------------~~~~l~~~~~ 102 (313)
.++..+|.||++| +.|+...|.+.++..++.+ .+.++.|+.+... ....+++.||
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 3457788899999 9999999999999988864 3666666665421 0246778999
Q ss_pred CCCCCCcEEEEEcCCC
Q 021368 103 ITGEAPKVLAYTGNDD 118 (313)
Q Consensus 103 v~~~~~P~i~~~~~~~ 118 (313)
|.++ |++++++.++
T Consensus 97 v~~~--P~~~lid~~G 110 (131)
T cd03009 97 IEGI--PTLIILDADG 110 (131)
T ss_pred CCCC--CEEEEECCCC
Confidence 9988 9998997554
No 217
>PTZ00256 glutathione peroxidase; Provisional
Probab=97.80 E-value=0.00013 Score=59.53 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=35.4
Q ss_pred CCCcE-EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 021368 177 ESKDV-LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 221 (313)
Q Consensus 177 ~~k~~-lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~ 221 (313)
.++++ ++++|++||++|...+|.+.++.+++++. ++.+..++++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~-gv~vv~vs~~ 83 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ-GLEILAFPCN 83 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC-CcEEEEEecc
Confidence 35654 55679999999999999999999999764 5777777753
No 218
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.79 E-value=4.8e-05 Score=60.18 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=37.2
Q ss_pred CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 021368 177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 221 (313)
Q Consensus 177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~ 221 (313)
.+++++|+||++||+ |...++.+.++..++++. ++.+..++++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~-~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR-GLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC-CEEEEEeccC
Confidence 378999999999999 999999999999999764 5778777654
No 219
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.75 E-value=0.00018 Score=61.39 Aligned_cols=87 Identities=16% Similarity=0.139 Sum_probs=62.5
Q ss_pred CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-----------ccCCCCcCceEEEEeCCCCCc
Q 021368 178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------HRAKSDGFPTILFFPAGNKSF 246 (313)
Q Consensus 178 ~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----------~~~~v~~~P~i~~~~~g~~~~ 246 (313)
++.-+++||.+.|+.|.++.|++..++.++.= .+..+.+|....+. ++++++.+|++++...+....
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYGI--SVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence 45789999999999999999999999999853 34555555442211 477899999999986654431
Q ss_pred CceeeccCcCHHHHHHHHHhc
Q 021368 247 DPINVDVDRTVVALYKFLKKN 267 (313)
Q Consensus 247 ~~~~y~g~~~~~~l~~fi~~~ 267 (313)
.|+ -.|..+.++|.+-|...
T Consensus 228 ~pv-~~G~iS~deL~~Ri~~v 247 (256)
T TIGR02739 228 SPL-AYGFISQDELKERILNV 247 (256)
T ss_pred EEE-eeccCCHHHHHHHHHHH
Confidence 333 33678888887766544
No 220
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.75 E-value=0.00024 Score=57.29 Aligned_cols=86 Identities=10% Similarity=0.159 Sum_probs=63.7
Q ss_pred EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcc--------c--ccchhhhhCC--CCCCCcEEEEEcCCCC
Q 021368 53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED--------V--GKPVSEYFGI--TGEAPKVLAYTGNDDA 119 (313)
Q Consensus 53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~--------~--~~~l~~~~~v--~~~~~P~i~~~~~~~~ 119 (313)
+|.||+.| ++|++..|.+.++++++. +.+..|+.+... + ...+...||+ .++ |+.++++.+..
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~i--PttfLId~~G~ 148 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVAT--PTTFLVNVNTL 148 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCC--CeEEEEeCCCc
Confidence 77899999 999999999999999985 455555554320 0 1225567885 466 88888877654
Q ss_pred cee-ccCCCCCHHHHHHHHHHHhc
Q 021368 120 KKH-ILDGELTLDKIKTFGEDFLE 142 (313)
Q Consensus 120 ~~~-~~~g~~~~~~i~~fi~~~~~ 142 (313)
..+ .+.|.++.+.+.+-+.+.+.
T Consensus 149 i~~~~~~G~~~~~~L~~~I~~ll~ 172 (181)
T PRK13728 149 EALPLLQGATDAAGFMARMDTVLQ 172 (181)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHh
Confidence 433 57899999999999888875
No 221
>smart00594 UAS UAS domain.
Probab=97.69 E-value=0.00018 Score=54.60 Aligned_cols=88 Identities=18% Similarity=0.265 Sum_probs=67.8
Q ss_pred cCCCccEEEEEeeC-CchhhhhHH-HH--HHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCC---
Q 021368 47 ESPIKNQLLLFAVS-NDSEKLLPV-FE--EAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDA--- 119 (313)
Q Consensus 47 ~~~~~~~v~f~~~~-~~c~~~~~~-~~--~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~--- 119 (313)
+.++..+|+|+++| ..|..+... |. ++.+.++..+.+..+|.+..+ +..++..|+++++ |+++++....+
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~e-g~~l~~~~~~~~~--P~~~~l~~~~g~~~ 101 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSE-GQRVSQFYKLDSF--PYVAIVDPRTGQRV 101 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChh-HHHHHHhcCcCCC--CEEEEEecCCCcee
Confidence 45567888999999 999988663 33 355666667888888988766 7899999999998 99999876542
Q ss_pred --ceeccCCCCCHHHHHHHH
Q 021368 120 --KKHILDGELTLDKIKTFG 137 (313)
Q Consensus 120 --~~~~~~g~~~~~~i~~fi 137 (313)
....+.|..+.+++..++
T Consensus 102 ~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 102 IEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEEeccccCCCCHHHHHHhh
Confidence 133468999999998775
No 222
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.69 E-value=0.00019 Score=50.66 Aligned_cols=75 Identities=13% Similarity=0.175 Sum_probs=54.9
Q ss_pred EEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc-----c-c--cCCCCcCceEEEEeCCCCCcCceeec
Q 021368 181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-----H-H--RAKSDGFPTILFFPAGNKSFDPINVD 252 (313)
Q Consensus 181 ~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~-----~-~--~~~v~~~P~i~~~~~g~~~~~~~~y~ 252 (313)
.++.|+.+||+.|..+...+.++...+. ++.+..+|++.+. . . ..+..++|++++ +|..+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~---~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~i------- 69 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD---DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHI------- 69 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc---CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEE-------
Confidence 4788999999999999999999987653 4677778877652 1 1 223578999875 55543
Q ss_pred cCcCHHHHHHHHHhcCC
Q 021368 253 VDRTVVALYKFLKKNAS 269 (313)
Q Consensus 253 g~~~~~~l~~fi~~~~~ 269 (313)
...++|.++++.+++
T Consensus 70 --gg~~~~~~~~~~~~~ 84 (85)
T PRK11200 70 --GGCTDFEAYVKENLG 84 (85)
T ss_pred --cCHHHHHHHHHHhcc
Confidence 245788898888865
No 223
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=97.68 E-value=0.00018 Score=61.98 Aligned_cols=103 Identities=17% Similarity=0.159 Sum_probs=69.4
Q ss_pred CCceEEeCC-CcccccccC---CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCC
Q 021368 31 LPLVTIFTR-ENAPSVFES---PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITG 105 (313)
Q Consensus 31 ~~~v~~lt~-~~~~~~~~~---~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~ 105 (313)
...|.+++. +.|...+.. ...++|.||.+. ..|..+...|..||.+|.. ++|+.|..... .++..|.+..
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-vKFvkI~a~~~----~~~~~f~~~~ 198 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE-VKFVKIRASKC----PASENFPDKN 198 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-SEEEEEEECGC----CTTTTS-TTC
T ss_pred CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEEehhcc----CcccCCcccC
Confidence 457778864 566665533 223556689998 9999999999999999999 99999998752 3678899987
Q ss_pred CCCcEEEEEcCCCCc--eec---c-CCCCCHHHHHHHHHHH
Q 021368 106 EAPKVLAYTGNDDAK--KHI---L-DGELTLDKIKTFGEDF 140 (313)
Q Consensus 106 ~~~P~i~~~~~~~~~--~~~---~-~g~~~~~~i~~fi~~~ 140 (313)
. |+|++|++|... -.. . ....+..+|..|+.++
T Consensus 199 L--PtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 199 L--PTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp ---SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred C--CEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 7 999999987622 111 1 2357889999999886
No 224
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.67 E-value=2.4e-05 Score=64.25 Aligned_cols=99 Identities=15% Similarity=0.107 Sum_probs=84.5
Q ss_pred ceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcccccchhhhhCCCCCCCcE
Q 021368 33 LVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEAPKV 110 (313)
Q Consensus 33 ~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~ 110 (313)
.+..++.+|+..+.+. .|+++|+++| +.|..+.++|...|.--.+ .|.+++||.+. |+.|--+|-+.+. |+
T Consensus 25 ~~~~~~eenw~~~l~g--ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~---npgLsGRF~vtaL--pt 97 (248)
T KOG0913|consen 25 KLTRIDEENWKELLTG--EWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTT---NPGLSGRFLVTAL--PT 97 (248)
T ss_pred eeEEecccchhhhhch--HHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEe---ccccceeeEEEec--ce
Confidence 7889999999988765 7999999999 9999999999999887666 49999999998 7799999999877 88
Q ss_pred EEEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021368 111 LAYTGNDDAKKHILDGELTLDKIKTFGEDF 140 (313)
Q Consensus 111 i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~ 140 (313)
|.=...|. -..|.|.++..++..|+..-
T Consensus 98 IYHvkDGe--FrrysgaRdk~dfisf~~~r 125 (248)
T KOG0913|consen 98 IYHVKDGE--FRRYSGARDKNDFISFEEHR 125 (248)
T ss_pred EEEeeccc--cccccCcccchhHHHHHHhh
Confidence 75554444 34679999999999999874
No 225
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.67 E-value=0.00042 Score=51.60 Aligned_cols=102 Identities=16% Similarity=0.132 Sum_probs=75.3
Q ss_pred eEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHH---hcCCCcEEEEEEeCCCccc--ccCCCCc--Cc
Q 021368 162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH---LRGVDSIVIAKMDGTTNEH--HRAKSDG--FP 234 (313)
Q Consensus 162 v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~---~~~~~~v~~~~vd~~~~~~--~~~~v~~--~P 234 (313)
|++++.++...+. ..+.+..++|+++ ..-..+...+.++|+. +++ .+.|+.+|.+.... +.|+++. +|
T Consensus 1 ~~e~t~e~~~~~~-~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kg--ki~Fv~~d~~~~~~~~~~fgl~~~~~P 75 (111)
T cd03072 1 VREITFENAEELT-EEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKG--AINFLTADGDKFRHPLLHLGKTPADLP 75 (111)
T ss_pred CcccccccHHHHh-cCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCc--eEEEEEEechHhhhHHHHcCCCHhHCC
Confidence 4567888888765 4555655556533 2346788899999999 887 69999999998754 7888876 89
Q ss_pred eEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368 235 TILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 269 (313)
Q Consensus 235 ~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~ 269 (313)
.+.+....... +...+.+..+.+.|.+|+.+.+.
T Consensus 76 ~i~i~~~~~~~-Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 76 VIAIDSFRHMY-LFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EEEEEcchhcC-cCCCCccccCHHHHHHHHHHHhc
Confidence 99998664422 11116678899999999998764
No 226
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.66 E-value=0.00024 Score=72.92 Aligned_cols=93 Identities=19% Similarity=0.169 Sum_probs=72.0
Q ss_pred CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCC---Cc---------------------ccccchhhhh
Q 021368 48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMD---NE---------------------DVGKPVSEYF 101 (313)
Q Consensus 48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~---~~---------------------~~~~~l~~~~ 101 (313)
.++.++|.||+.| ++|+...|.|.+++++|+++ +.|+.|.+. ++ +....+.+.|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 3557788899999 99999999999999999875 777766431 10 0134677889
Q ss_pred CCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368 102 GITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE 142 (313)
Q Consensus 102 ~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~ 142 (313)
+|.+. |++++++.++.....+.|....+.+.+++...+.
T Consensus 499 ~V~~i--Pt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 499 GVSSW--PTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred CCCcc--ceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 99988 9999997655455567888899999999988753
No 227
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=97.65 E-value=0.00021 Score=54.97 Aligned_cols=69 Identities=17% Similarity=0.205 Sum_probs=52.0
Q ss_pred CCCccEEEEEeeC-CchhhhhHHHHHHHHhccC---eEEEEEEeCCCcc----------------------cccchhhhh
Q 021368 48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNED----------------------VGKPVSEYF 101 (313)
Q Consensus 48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~---~v~f~~vd~~~~~----------------------~~~~l~~~~ 101 (313)
.++..+|.|+++| ++|+...|.+.+++.++.+ .+.++.|+.+... ....+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 3457788899999 9999999999999998875 3677777765421 012455679
Q ss_pred CCCCCCCcEEEEEcCCC
Q 021368 102 GITGEAPKVLAYTGNDD 118 (313)
Q Consensus 102 ~v~~~~~P~i~~~~~~~ 118 (313)
+|.++ |++++++.++
T Consensus 96 ~v~~i--Pt~~lid~~G 110 (132)
T cd02964 96 KVEGI--PTLVVLKPDG 110 (132)
T ss_pred CCCCC--CEEEEECCCC
Confidence 99988 9998887553
No 228
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=97.64 E-value=0.0002 Score=54.27 Aligned_cols=68 Identities=22% Similarity=0.462 Sum_probs=52.4
Q ss_pred CCCcEEEEEeCC-CCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-----------------------ccCCCC-
Q 021368 177 ESKDVLLEIYAP-WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------HRAKSD- 231 (313)
Q Consensus 177 ~~k~~lv~fy~~-~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----------------------~~~~v~- 231 (313)
.+++++|.||+. ||+.|....+.+.++..+++.. ++.+..+..+.... ..|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~-~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 102 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK-GVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIED 102 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEE
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccc-eEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCcc
Confidence 468999999999 9999999999999999999864 58888777765331 234555
Q ss_pred -----cCceEEEEeCCCCC
Q 021368 232 -----GFPTILFFPAGNKS 245 (313)
Q Consensus 232 -----~~P~i~~~~~g~~~ 245 (313)
.+|+++++..+..+
T Consensus 103 ~~~~~~~p~~~lid~~g~I 121 (124)
T PF00578_consen 103 EKDTLALPAVFLIDPDGKI 121 (124)
T ss_dssp TTTSEESEEEEEEETTSBE
T ss_pred ccCCceEeEEEEECCCCEE
Confidence 77888888665543
No 229
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.00047 Score=50.62 Aligned_cols=72 Identities=21% Similarity=0.425 Sum_probs=52.7
Q ss_pred cChHHHhh--cCCCcEEEEEeC--------CCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc---------ccC
Q 021368 168 NNFDEIVL--DESKDVLLEIYA--------PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---------HRA 228 (313)
Q Consensus 168 ~~f~~~l~--~~~k~~lv~fy~--------~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~---------~~~ 228 (313)
++|.+.+. .+++.++|+|++ +||+.|.+..|.+.+.-+.... ++.|+.+++..-+. ...
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~--~~~~v~v~VG~rp~Wk~p~n~FR~d~ 90 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE--DVHFVHVYVGNRPYWKDPANPFRKDP 90 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC--ceEEEEEEecCCCcccCCCCccccCC
Confidence 34555553 234558899985 6999999999999998875555 78899998876443 223
Q ss_pred CC-CcCceEEEEeC
Q 021368 229 KS-DGFPTILFFPA 241 (313)
Q Consensus 229 ~v-~~~P~i~~~~~ 241 (313)
++ +++||++=|.+
T Consensus 91 ~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 91 GILTAVPTLLRWKR 104 (128)
T ss_pred CceeecceeeEEcC
Confidence 44 89999999975
No 230
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.63 E-value=0.00038 Score=59.05 Aligned_cols=87 Identities=17% Similarity=0.110 Sum_probs=63.8
Q ss_pred CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-----------ccCCCCcCceEEEEeCCCCCc
Q 021368 178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------HRAKSDGFPTILFFPAGNKSF 246 (313)
Q Consensus 178 ~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----------~~~~v~~~P~i~~~~~g~~~~ 246 (313)
++.-|++||.+.|+.|.++.|++..++.++.= .+..+.+|....+. .++++..+|++++...+....
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGL--SVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 45789999999999999999999999999854 45556666533221 368999999999996655421
Q ss_pred CceeeccCcCHHHHHHHHHhc
Q 021368 247 DPINVDVDRTVVALYKFLKKN 267 (313)
Q Consensus 247 ~~~~y~g~~~~~~l~~fi~~~ 267 (313)
.|+ -.|..+.++|.+-|...
T Consensus 221 ~pv-~~G~iS~deL~~Ri~~v 240 (248)
T PRK13703 221 RPL-SYGFITQDDLAKRFLNV 240 (248)
T ss_pred EEE-eeccCCHHHHHHHHHHH
Confidence 333 33678888887766544
No 231
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00015 Score=59.38 Aligned_cols=175 Identities=17% Similarity=0.191 Sum_probs=101.7
Q ss_pred CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCC
Q 021368 48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDG 126 (313)
Q Consensus 48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g 126 (313)
.....++.|++.| ..|.++..++..+|..+ ..+.|..++.+. .++++..+.+... |.+.++..+... -+..|
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~---~~eis~~~~v~~v--p~~~~~~~~~~v-~~l~~ 88 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEE---FPEISNLIAVEAV--PYFVFFFLGEKV-DRLSG 88 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhh---hhHHHHHHHHhcC--ceeeeeecchhh-hhhhc
Confidence 4445667799999 99999999999999999 449999999998 6699999999998 988777555421 12233
Q ss_pred CCCHHHHH---HHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEcCcChHHHhhc--CCCcEEEEEe----CCCCccchhhh
Q 021368 127 ELTLDKIK---TFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLD--ESKDVLLEIY----APWCGHCQAFE 197 (313)
Q Consensus 127 ~~~~~~i~---~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~l~~--~~k~~lv~fy----~~~C~~C~~~~ 197 (313)
........ ........ .. ..-.+..+-+. .-..-+ . +++.+.. +.++++++.= .|.|+..+++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~e~---~~~~~~-~-~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v 161 (227)
T KOG0911|consen 89 ADPPFLVSKVEKLAESGSA-SL-GMGLSTTIRET---QTTNET-D-LDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLV 161 (227)
T ss_pred cCcHHHHHHHHHhhhhccc-cc-CCCCCcchhcc---cccchh-h-HHHHHHHhcccCeEEEEecCCCCcccccccHHHH
Confidence 32222222 22222210 00 00000000000 000000 1 3333322 3455555432 46788888777
Q ss_pred HHHHHHHHHhcCCCcEEEEEEeCCCcccccCC---CCcCceE-EEEeCCCC
Q 021368 198 PTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK---SDGFPTI-LFFPAGNK 244 (313)
Q Consensus 198 ~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~---v~~~P~i-~~~~~g~~ 244 (313)
.++... ++.+..+|+..++.-+.+ .+.+||+ -+|-+|..
T Consensus 162 ~iL~~~--------nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEF 204 (227)
T KOG0911|consen 162 GILQSH--------NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEF 204 (227)
T ss_pred HHHHHc--------CCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEe
Confidence 766655 577899999988773332 3345554 34445554
No 232
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.59 E-value=0.00041 Score=52.01 Aligned_cols=91 Identities=9% Similarity=-0.004 Sum_probs=64.9
Q ss_pred hcCCCcEEEEEeCC----CCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc----ccCCCCcCceEEEEe-CCCCC
Q 021368 175 LDESKDVLLEIYAP----WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTILFFP-AGNKS 245 (313)
Q Consensus 175 ~~~~k~~lv~fy~~----~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~----~~~~v~~~P~i~~~~-~g~~~ 245 (313)
..+.|..+|++|++ ||..|+..... .++.+.+.. ++.+...|+...+. ..+++.++|++.++. .++..
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~ 90 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRM 90 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCce
Confidence 45679999999999 78888655321 334444544 68888899987765 578999999999983 22221
Q ss_pred cCceeeccCcCHHHHHHHHHhcC
Q 021368 246 FDPINVDVDRTVVALYKFLKKNA 268 (313)
Q Consensus 246 ~~~~~y~g~~~~~~l~~fi~~~~ 268 (313)
.-..+..|..+.++|+..|+...
T Consensus 91 ~vv~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 91 TIVGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHH
Confidence 11237889999999999887654
No 233
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=97.56 E-value=7.2e-05 Score=58.16 Aligned_cols=69 Identities=22% Similarity=0.505 Sum_probs=50.6
Q ss_pred CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCC-cEEEEEEeCCCccc---------------------------ccC
Q 021368 177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVD-SIVIAKMDGTTNEH---------------------------HRA 228 (313)
Q Consensus 177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~-~v~~~~vd~~~~~~---------------------------~~~ 228 (313)
.+|.+.++|-+.||++|+.+.|.+.++-..++++. .+-++.|+.+.... ..|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 46999999999999999999999999999887742 24444444443211 256
Q ss_pred CCCcCceEEEE-eCCCCC
Q 021368 229 KSDGFPTILFF-PAGNKS 245 (313)
Q Consensus 229 ~v~~~P~i~~~-~~g~~~ 245 (313)
.+.+.|++.+. ++|..+
T Consensus 112 ~v~~iP~l~i~~~dG~~v 129 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVV 129 (157)
T ss_pred ccCcCceeEEecCCCCEe
Confidence 88999999887 455443
No 234
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=97.54 E-value=0.00027 Score=54.84 Aligned_cols=44 Identities=16% Similarity=0.267 Sum_probs=35.0
Q ss_pred CCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368 178 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 222 (313)
Q Consensus 178 ~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~ 222 (313)
+++++|+|| +.||+.|....+.+.++..+++.. ++.++.+..+.
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~~~vv~is~d~ 67 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL-GAVVIGVSPDS 67 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCCC
Confidence 788999999 589999999999999999988653 46666555443
No 235
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=97.54 E-value=0.0002 Score=53.46 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=45.4
Q ss_pred CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEe-CCCcccccchhhhhCCCCCCCcEE
Q 021368 49 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQ-MDNEDVGKPVSEYFGITGEAPKVL 111 (313)
Q Consensus 49 ~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd-~~~~~~~~~l~~~~~v~~~~~P~i 111 (313)
+.+.+|.||++| ++|+...|.+.++++++.+.+.++.+- .+.+. ...+++++++..+ |++
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~-~~~~~~~~~~~~~--p~~ 82 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAE-HQRFLKKHGLEAF--PYV 82 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHH-HHHHHHHhCCCCC--cEE
Confidence 557888899999 999999999999999987766655552 22222 5677888888766 765
No 236
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.51 E-value=0.0003 Score=56.21 Aligned_cols=103 Identities=21% Similarity=0.249 Sum_probs=79.7
Q ss_pred CeEEEc-CcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEE
Q 021368 161 DVKIVV-GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL 237 (313)
Q Consensus 161 ~v~~l~-~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~ 237 (313)
....+. ..+|-+... .+..+++.||-+.-..|+.|-..++.+|.++-. ..|+++|+...+- .+++|.-+|+++
T Consensus 67 ~y~ev~~Ekdf~~~~~-kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e---TrFikvnae~~PFlv~kL~IkVLP~v~ 142 (211)
T KOG1672|consen 67 EYEEVASEKDFFEEVK-KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE---TRFIKVNAEKAPFLVTKLNIKVLPTVA 142 (211)
T ss_pred eEEEeccHHHHHHHhh-cCceEEEEEEcCCCcceehHHHHHHHHHHhccc---ceEEEEecccCceeeeeeeeeEeeeEE
Confidence 344554 566777663 567799999999999999999999999998765 7899999988876 899999999999
Q ss_pred EEeCCCCCcCceeec--c---CcCHHHHHHHHHhc
Q 021368 238 FFPAGNKSFDPINVD--V---DRTVVALYKFLKKN 267 (313)
Q Consensus 238 ~~~~g~~~~~~~~y~--g---~~~~~~l~~fi~~~ 267 (313)
+|.+|..+...+.|. | ..+.+.|..-|..-
T Consensus 143 l~k~g~~~D~iVGF~dLGnkDdF~te~LE~rL~~S 177 (211)
T KOG1672|consen 143 LFKNGKTVDYVVGFTDLGNKDDFTTETLENRLAKS 177 (211)
T ss_pred EEEcCEEEEEEeeHhhcCCCCcCcHHHHHHHHhhc
Confidence 999999886555565 2 23456555555443
No 237
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=97.43 E-value=0.0005 Score=53.69 Aligned_cols=69 Identities=17% Similarity=0.237 Sum_probs=51.9
Q ss_pred CCCccEEEEEeeC-CchhhhhHHHHHHHHhccC--------eEEEEEEeCCCccc----------------------ccc
Q 021368 48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG--------KLIFVYVQMDNEDV----------------------GKP 96 (313)
Q Consensus 48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~--------~v~f~~vd~~~~~~----------------------~~~ 96 (313)
++..++|.|+++| ++|++..|.+.++..++.+ .+.++.|+.+.... ...
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 3457888899999 9999999999998876653 37888888664210 124
Q ss_pred hhhhhCCCCCCCcEEEEEcCCC
Q 021368 97 VSEYFGITGEAPKVLAYTGNDD 118 (313)
Q Consensus 97 l~~~~~v~~~~~P~i~~~~~~~ 118 (313)
+.+.|++.+. |+.++++.++
T Consensus 104 l~~~y~v~~i--Pt~vlId~~G 123 (146)
T cd03008 104 LEAQFSVEEL--PTVVVLKPDG 123 (146)
T ss_pred HHHHcCCCCC--CEEEEECCCC
Confidence 6678888877 8888887653
No 238
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.42 E-value=0.00067 Score=49.00 Aligned_cols=87 Identities=17% Similarity=0.188 Sum_probs=63.5
Q ss_pred ccccccCCCccEEEEEeeCCchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCce
Q 021368 42 APSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKK 121 (313)
Q Consensus 42 ~~~~~~~~~~~~v~f~~~~~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~ 121 (313)
++.++.....++|-||.++ |......|.++|..+.+.+.|+.+.- ..+.+.+++. .|++.+++.....+
T Consensus 10 l~~~~~~~~~~vvg~f~~~--~~~~~~~f~~~A~~~r~~~~F~~~~~------~~~~~~~~~~---~~~i~l~~~~~~~~ 78 (97)
T cd02981 10 LEKFLDKDDVVVVGFFKDE--ESEEYKTFEKVAESLRDDYGFGHTSD------KEVAKKLKVK---PGSVVLFKPFEEEP 78 (97)
T ss_pred HHHHhccCCeEEEEEECCC--CcHHHHHHHHHHHhcccCCeEEEECh------HHHHHHcCCC---CCceEEeCCcccCC
Confidence 4445566666777788764 33788999999999987799988773 2567777763 36666776544445
Q ss_pred eccCCCCCHHHHHHHHHH
Q 021368 122 HILDGELTLDKIKTFGED 139 (313)
Q Consensus 122 ~~~~g~~~~~~i~~fi~~ 139 (313)
..|.|..+.++|.+|+..
T Consensus 79 ~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 79 VEYDGEFTEESLVEFIKD 96 (97)
T ss_pred ccCCCCCCHHHHHHHHHh
Confidence 668999999999999875
No 239
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.42 E-value=0.0039 Score=47.78 Aligned_cols=109 Identities=8% Similarity=0.107 Sum_probs=75.1
Q ss_pred CeEEEcCcChHHHhhcCCCcEEEEEeCC--CCcc-c-hhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCC--c
Q 021368 161 DVKIVVGNNFDEIVLDESKDVLLEIYAP--WCGH-C-QAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSD--G 232 (313)
Q Consensus 161 ~v~~l~~~~f~~~l~~~~k~~lv~fy~~--~C~~-C-~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~--~ 232 (313)
.|.+|+.++..+..=..+..-+|.|.-. .|.. + ..+...+.++|+++++.+ +.|+.+|.+.... +.|++. .
T Consensus 3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~-i~Fv~vd~~~~~~~~~~fgl~~~~ 81 (130)
T cd02983 3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKP-WGWLWTEAGAQLDLEEALNIGGFG 81 (130)
T ss_pred ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCc-EEEEEEeCcccHHHHHHcCCCccC
Confidence 3566766655332212344445555432 1222 2 467888999999999832 8999999998765 778885 5
Q ss_pred CceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCCCCc
Q 021368 233 FPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF 272 (313)
Q Consensus 233 ~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~ 272 (313)
+|+++++...+. +...+.|..+.++|.+|+.+.+.-+.
T Consensus 82 ~P~v~i~~~~~~--KY~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 82 YPAMVAINFRKM--KFATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred CCEEEEEecccC--ccccccCccCHHHHHHHHHHHHcCCc
Confidence 899999976543 12237799999999999999987665
No 240
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.38 E-value=0.00034 Score=65.40 Aligned_cols=103 Identities=13% Similarity=0.124 Sum_probs=78.6
Q ss_pred EEeCCC-cccccccCCC--ccEEEEEeeC-CchhhhhHHHH---HHHHhccCeEEEEEEeCCCccc-ccchhhhhCCCCC
Q 021368 35 TIFTRE-NAPSVFESPI--KNQLLLFAVS-NDSEKLLPVFE---EAAKSFKGKLIFVYVQMDNEDV-GKPVSEYFGITGE 106 (313)
Q Consensus 35 ~~lt~~-~~~~~~~~~~--~~~v~f~~~~-~~c~~~~~~~~---~~a~~~~~~v~f~~vd~~~~~~-~~~l~~~~~v~~~ 106 (313)
..+++. .+++...+.+ ++++.||++| -.|+...+..- ++..++.+ ++...+|.++.+. +.++.++||+-+.
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~-~vlLqaDvT~~~p~~~~lLk~~~~~G~ 535 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD-VVLLQADVTANDPAITALLKRLGVFGV 535 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCC-eEEEEeeecCCCHHHHHHHHHcCCCCC
Confidence 445555 5666665555 7788899999 89998877432 45556666 8899999988542 6788899999877
Q ss_pred CCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021368 107 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF 140 (313)
Q Consensus 107 ~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~ 140 (313)
|+++||+.+...+-...|.++.+.+.+++++.
T Consensus 536 --P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 536 --PTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred --CEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 99999996554445588999999999999875
No 241
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.38 E-value=0.00044 Score=55.30 Aligned_cols=104 Identities=10% Similarity=0.008 Sum_probs=81.1
Q ss_pred CCCceEEeC-CCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCC
Q 021368 30 KLPLVTIFT-RENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA 107 (313)
Q Consensus 30 ~~~~v~~lt-~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~ 107 (313)
....+.++. ..+|-.....+..+++.||.+. ..|+-+-..|+.+|..+-+ ..|+.||+.. .|-|+.+++|+-.
T Consensus 64 GhG~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae~---~PFlv~kL~IkVL- 138 (211)
T KOG1672|consen 64 GHGEYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAEK---APFLVTKLNIKVL- 138 (211)
T ss_pred CCceEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEeccc---CceeeeeeeeeEe-
Confidence 344566665 5566666767778888899999 9999999999999999999 9999999998 6699999999988
Q ss_pred CcEEEEEcCCCCceec--c---C--CCCCHHHHHHHHHH
Q 021368 108 PKVLAYTGNDDAKKHI--L---D--GELTLDKIKTFGED 139 (313)
Q Consensus 108 ~P~i~~~~~~~~~~~~--~---~--g~~~~~~i~~fi~~ 139 (313)
|++++|.++...-+. | . .+.+.+.|..-+..
T Consensus 139 -P~v~l~k~g~~~D~iVGF~dLGnkDdF~te~LE~rL~~ 176 (211)
T KOG1672|consen 139 -PTVALFKNGKTVDYVVGFTDLGNKDDFTTETLENRLAK 176 (211)
T ss_pred -eeEEEEEcCEEEEEEeeHhhcCCCCcCcHHHHHHHHhh
Confidence 999999887633221 1 1 24677777665554
No 242
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.36 E-value=0.00027 Score=49.50 Aligned_cols=56 Identities=16% Similarity=0.379 Sum_probs=39.9
Q ss_pred EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-------ccCCCCcCceEEEEeCCC
Q 021368 182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-------HRAKSDGFPTILFFPAGN 243 (313)
Q Consensus 182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-------~~~~v~~~P~i~~~~~g~ 243 (313)
++.|+++||++|..+.+.+.++. +.. .+.+..+|.+.+.. ...++.++|++++ +|.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~--~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~ 63 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP--AYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGK 63 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC--CCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCE
Confidence 47899999999999999998886 221 36677776654331 3357789999854 544
No 243
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.29 E-value=0.00083 Score=47.53 Aligned_cols=77 Identities=16% Similarity=0.179 Sum_probs=52.2
Q ss_pred EEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------ccCC--CCcCceEEEEeCCCCCcCceeec
Q 021368 181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAK--SDGFPTILFFPAGNKSFDPINVD 252 (313)
Q Consensus 181 ~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------~~~~--v~~~P~i~~~~~g~~~~~~~~y~ 252 (313)
++++|..+||+.|..+...+.++..... .+.+..+|+..... ...+ ..++|.+++ +|..+
T Consensus 1 ~V~vys~~~Cp~C~~ak~~L~~~~~~~~---~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~i------- 68 (86)
T TIGR02183 1 FVVIFGRPGCPYCVRAKQLAEKLAIERA---DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHV------- 68 (86)
T ss_pred CEEEEeCCCCccHHHHHHHHHHhCcccC---CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEe-------
Confidence 3678999999999999999888764432 35666677764331 2223 368999965 44432
Q ss_pred cCcCHHHHHHHHHhcCCCC
Q 021368 253 VDRTVVALYKFLKKNASIP 271 (313)
Q Consensus 253 g~~~~~~l~~fi~~~~~~~ 271 (313)
| ..++|.++++++.++.
T Consensus 69 g--G~~dl~~~~~~~~~~~ 85 (86)
T TIGR02183 69 G--GCTDFEQLVKENFDIE 85 (86)
T ss_pred c--CHHHHHHHHHhccccc
Confidence 2 3478889998887654
No 244
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.29 E-value=0.0016 Score=54.53 Aligned_cols=83 Identities=12% Similarity=0.165 Sum_probs=60.9
Q ss_pred ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCC------cccccchhhhhCCCCCCCcEEEEEcCCCCceec
Q 021368 51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDN------EDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHI 123 (313)
Q Consensus 51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~------~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~ 123 (313)
.-+++||... +.|+.+.|++..++.++.=.|..+.+|... ...+..+.+++||..+ |+++++..+....+.
T Consensus 122 ~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~--Pal~Lv~~~~~~~~p 199 (215)
T PF13728_consen 122 YGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVT--PALFLVNPNTKKWYP 199 (215)
T ss_pred eEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcC--CEEEEEECCCCeEEE
Confidence 4477788888 999999999999999995556555555321 0013578899999977 998888876633333
Q ss_pred -cCCCCCHHHHHH
Q 021368 124 -LDGELTLDKIKT 135 (313)
Q Consensus 124 -~~g~~~~~~i~~ 135 (313)
-.|.++.++|.+
T Consensus 200 v~~G~~s~~~L~~ 212 (215)
T PF13728_consen 200 VSQGFMSLDELED 212 (215)
T ss_pred EeeecCCHHHHHH
Confidence 368888888865
No 245
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=97.28 E-value=0.0016 Score=49.55 Aligned_cols=75 Identities=12% Similarity=0.089 Sum_probs=52.2
Q ss_pred CCCccEEEEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCc---c---------------------cccchhhhh
Q 021368 48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNE---D---------------------VGKPVSEYF 101 (313)
Q Consensus 48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~---~---------------------~~~~l~~~~ 101 (313)
.++..+|.||+.| +.|....|.+.++.+++++ .+.++.|++... . ....+.+.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 3457788899999 9999999999999999985 477777755210 0 123455667
Q ss_pred CCCCCCCcEEEEEcCCCCceecc
Q 021368 102 GITGEAPKVLAYTGNDDAKKHIL 124 (313)
Q Consensus 102 ~v~~~~~P~i~~~~~~~~~~~~~ 124 (313)
++.+. |+.++++.++...+.+
T Consensus 102 ~v~~~--P~~~vid~~G~v~~~~ 122 (126)
T cd03012 102 GNQYW--PALYLIDPTGNVRHVH 122 (126)
T ss_pred CCCcC--CeEEEECCCCcEEEEE
Confidence 77766 7777776554333333
No 246
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.26 E-value=0.00071 Score=52.55 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=38.4
Q ss_pred CCCcEEEEEeCCCCcc-chhhhHHHHHHHHHhcCCC--cEEEEEEeCCC
Q 021368 177 ESKDVLLEIYAPWCGH-CQAFEPTYNKLAKHLRGVD--SIVIAKMDGTT 222 (313)
Q Consensus 177 ~~k~~lv~fy~~~C~~-C~~~~~~~~~la~~~~~~~--~v~~~~vd~~~ 222 (313)
.+++++|.||++||+. |....+.+.++...++... ++.+..+..+.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 4789999999999998 9999999999999997642 47777777654
No 247
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.25 E-value=0.0004 Score=53.16 Aligned_cols=63 Identities=22% Similarity=0.437 Sum_probs=38.3
Q ss_pred CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--c---cCCCCcCceEEEEeCC
Q 021368 177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H---RAKSDGFPTILFFPAG 242 (313)
Q Consensus 177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~---~~~v~~~P~i~~~~~g 242 (313)
..+..++.|..+||+.|....|.+.+++.... ++.+-.+.-+.+.. . ..+...+|+++++.++
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p---~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~ 107 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANP---NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKD 107 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T---TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCC---CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCC
Confidence 34567888999999999999999999999754 34444443333332 2 2467899999999654
No 248
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=97.25 E-value=0.0037 Score=50.34 Aligned_cols=97 Identities=11% Similarity=0.075 Sum_probs=70.6
Q ss_pred CCCccEEEEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCc------c--------------------cccchhh
Q 021368 48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNE------D--------------------VGKPVSE 99 (313)
Q Consensus 48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~------~--------------------~~~~l~~ 99 (313)
.+...+++||..| +.|....+.+.++..++.+ .+.|+.|.++.. . ....+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 4456788899999 9999999999999999984 588888877541 0 1235567
Q ss_pred hhCCCCCCCcEEEEEcCCCCceecc---------CCCCCHHHHHHHHHHHhcCCCC
Q 021368 100 YFGITGEAPKVLAYTGNDDAKKHIL---------DGELTLDKIKTFGEDFLEGKLK 146 (313)
Q Consensus 100 ~~~v~~~~~P~i~~~~~~~~~~~~~---------~g~~~~~~i~~fi~~~~~~~~~ 146 (313)
.||+... |.+++++.++...+.. .+..+.+.+.+.|...+.|.-.
T Consensus 104 ~~~v~~~--P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 157 (171)
T cd02969 104 AYGAACT--PDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPV 157 (171)
T ss_pred HcCCCcC--CcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCC
Confidence 8899877 8888887655332221 1335678899999999886543
No 249
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.24 E-value=0.0023 Score=47.60 Aligned_cols=96 Identities=19% Similarity=0.129 Sum_probs=67.0
Q ss_pred EEcCcChHHHhhcCCCcEEEEEeC----CCCccchhhhHHHHHHHHHhc-CCCcEEEEEEeCCCccc--ccCCCCc----
Q 021368 164 IVVGNNFDEIVLDESKDVLLEIYA----PWCGHCQAFEPTYNKLAKHLR-GVDSIVIAKMDGTTNEH--HRAKSDG---- 232 (313)
Q Consensus 164 ~l~~~~f~~~l~~~~k~~lv~fy~----~~C~~C~~~~~~~~~la~~~~-~~~~v~~~~vd~~~~~~--~~~~v~~---- 232 (313)
.++.++..... ..+.++.||. ..-..-..+...+.++|+.++ + .+.|+.+|.+.... +.|+++.
T Consensus 3 ~~~~en~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~g--ki~Fv~~D~~~~~~~l~~fgl~~~~~~ 77 (111)
T cd03073 3 HRTKDNRAQFT---KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDR--KLNFAVADKEDFSHELEEFGLDFSGGE 77 (111)
T ss_pred eeccchHHHhc---cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCC--eEEEEEEcHHHHHHHHHHcCCCcccCC
Confidence 45666666653 3444555542 222334678889999999999 6 69999999887654 6778763
Q ss_pred CceEEEEeCCCCCcCceeeccCc-CHHHHHHHHHhc
Q 021368 233 FPTILFFPAGNKSFDPINVDVDR-TVVALYKFLKKN 267 (313)
Q Consensus 233 ~P~i~~~~~g~~~~~~~~y~g~~-~~~~l~~fi~~~ 267 (313)
+|++.++...... . ...+.. +.+.|.+|+.+.
T Consensus 78 ~P~~~i~~~~~~K--Y-~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 78 KPVVAIRTAKGKK--Y-VMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred CCEEEEEeCCCCc--c-CCCcccCCHHHHHHHHHHh
Confidence 9999998754321 1 246677 999999999875
No 250
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=97.23 E-value=0.0024 Score=54.04 Aligned_cols=95 Identities=6% Similarity=-0.098 Sum_probs=65.4
Q ss_pred CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCCc-----c---cccchh-hhhCCCC-----------
Q 021368 48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNE-----D---VGKPVS-EYFGITG----------- 105 (313)
Q Consensus 48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~-----~---~~~~l~-~~~~v~~----------- 105 (313)
.++.++|.||+.| +.|....|.|.++.++++++ +.|+.|+|+.. + ....++ +++|+.-
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 3457788899999 99999999999999999864 88888887421 0 022332 2333210
Q ss_pred ---------------------CCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368 106 ---------------------EAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE 142 (313)
Q Consensus 106 ---------------------~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~ 142 (313)
...|+.++++.++.....+.|..+.+.|.+.|++.++
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 0015555666555556667888899999999988764
No 251
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0044 Score=47.89 Aligned_cols=86 Identities=15% Similarity=0.234 Sum_probs=58.4
Q ss_pred hhcCCCcEEEEEeCCCCccchhhhHHHHH---HHHHhcCCCcEEEEEEeCCCccc------------------ccCCCCc
Q 021368 174 VLDESKDVLLEIYAPWCGHCQAFEPTYNK---LAKHLRGVDSIVIAKMDGTTNEH------------------HRAKSDG 232 (313)
Q Consensus 174 l~~~~k~~lv~fy~~~C~~C~~~~~~~~~---la~~~~~~~~v~~~~vd~~~~~~------------------~~~~v~~ 232 (313)
+...++..+++|-++.|..|..+...+.. +-+.+.. ++.++.++++.... +.|++++
T Consensus 38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~--hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrs 115 (182)
T COG2143 38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE--HFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRS 115 (182)
T ss_pred cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh--CeEEEEEEeccCcceEeecCceeeeecHHHHHHHhcccc
Confidence 33457889999999999999999877643 4444544 67777777665321 4578999
Q ss_pred CceEEEEeCC-CCCcCceeeccCcCHHHHHHHH
Q 021368 233 FPTILFFPAG-NKSFDPINVDVDRTVVALYKFL 264 (313)
Q Consensus 233 ~P~i~~~~~g-~~~~~~~~y~g~~~~~~l~~fi 264 (313)
+|++++|... +.+- ..-|.+..++++.-+
T Consensus 116 tPtfvFfdk~Gk~Il---~lPGY~ppe~Fl~vl 145 (182)
T COG2143 116 TPTFVFFDKTGKTIL---ELPGYMPPEQFLAVL 145 (182)
T ss_pred CceEEEEcCCCCEEE---ecCCCCCHHHHHHHH
Confidence 9999999654 4432 445656555544433
No 252
>PTZ00056 glutathione peroxidase; Provisional
Probab=97.16 E-value=0.0029 Score=52.32 Aligned_cols=92 Identities=7% Similarity=-0.078 Sum_probs=64.4
Q ss_pred CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCC--------cccccchhhhhCCCCCCCc--------
Q 021368 48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDN--------EDVGKPVSEYFGITGEAPK-------- 109 (313)
Q Consensus 48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~--------~~~~~~l~~~~~v~~~~~P-------- 109 (313)
.+..++|.|++.| +.|.+..|.+.++..++.+. +.|+.|+|+. ......+++++|+. + |
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~-f--pvl~d~~v~ 114 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIK-Y--NFFEPIEVN 114 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCC-c--eeeeeeecc
Confidence 3457778899999 99999999999999999864 8889998742 11145566666652 2 2
Q ss_pred --------------------------------EEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368 110 --------------------------------VLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE 142 (313)
Q Consensus 110 --------------------------------~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~ 142 (313)
+.++++.++.....+.|..+.+.+.+.|.+.++
T Consensus 115 g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~ 179 (199)
T PTZ00056 115 GENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLG 179 (199)
T ss_pred CCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 233444444344556777888888888888765
No 253
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.15 E-value=0.00085 Score=54.59 Aligned_cols=44 Identities=14% Similarity=0.165 Sum_probs=37.5
Q ss_pred CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368 177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 222 (313)
Q Consensus 177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~ 222 (313)
.+++++|.|||+||+.|.+ ++.+.++.++|++. ++.+..+.|..
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~-gl~Vlg~p~nq 67 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQ-GFVVLGFPCNQ 67 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhC-CeEEEEeeccc
Confidence 3689999999999999975 78999999999864 58888888853
No 254
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.00034 Score=57.36 Aligned_cols=74 Identities=16% Similarity=0.313 Sum_probs=62.7
Q ss_pred hhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceee
Q 021368 174 VLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINV 251 (313)
Q Consensus 174 l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y 251 (313)
+.+..+..++.||++||..|.++..++..++..++ ++.+.+.+.+.... ..+.+...|.+.++..|..+. +.
T Consensus 13 ~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~---~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~---~l 86 (227)
T KOG0911|consen 13 LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK---NAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVD---RL 86 (227)
T ss_pred HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh---hheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhh---hh
Confidence 33467889999999999999999999999999983 58899998887766 678899999999998888875 55
Q ss_pred cc
Q 021368 252 DV 253 (313)
Q Consensus 252 ~g 253 (313)
.|
T Consensus 87 ~~ 88 (227)
T KOG0911|consen 87 SG 88 (227)
T ss_pred hc
Confidence 55
No 255
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.07 E-value=0.0016 Score=51.41 Aligned_cols=45 Identities=13% Similarity=0.239 Sum_probs=35.1
Q ss_pred CCCcEEEEEeCC-CCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368 177 ESKDVLLEIYAP-WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 222 (313)
Q Consensus 177 ~~k~~lv~fy~~-~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~ 222 (313)
.+++++|+||+. ||+.|....+.+.++...+++. ++.+..|..+.
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~-~v~vi~Is~d~ 74 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA-GVVVLGISTDK 74 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCCC
Confidence 468899999975 6888999999999998888754 46666666543
No 256
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.05 E-value=0.0046 Score=42.56 Aligned_cols=71 Identities=18% Similarity=0.348 Sum_probs=53.0
Q ss_pred EEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCC-CCCHHH
Q 021368 55 LLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDG-ELTLDK 132 (313)
Q Consensus 55 ~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g-~~~~~~ 132 (313)
.+++++ +.|..+...+++++..+ + +.+-.+|..+ .+++ .+|||.+. |++++ + | ...+.| ..+.+.
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~-~-i~~ei~~~~~---~~~~-~~ygv~~v--PalvI-n-g---~~~~~G~~p~~~e 70 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEEL-G-IEVEIIDIED---FEEI-EKYGVMSV--PALVI-N-G---KVVFVGRVPSKEE 70 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHT-T-EEEEEEETTT---HHHH-HHTT-SSS--SEEEE-T-T---EEEEESS--HHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhc-C-CeEEEEEccC---HHHH-HHcCCCCC--CEEEE-C-C---EEEEEecCCCHHH
Confidence 347888 99999999999999999 4 6677777755 4466 99999988 99954 3 2 356778 788888
Q ss_pred HHHHHH
Q 021368 133 IKTFGE 138 (313)
Q Consensus 133 i~~fi~ 138 (313)
|..+++
T Consensus 71 l~~~l~ 76 (76)
T PF13192_consen 71 LKELLE 76 (76)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 888874
No 257
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.03 E-value=0.0017 Score=50.82 Aligned_cols=47 Identities=15% Similarity=0.272 Sum_probs=36.0
Q ss_pred CCcE-EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc
Q 021368 178 SKDV-LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 225 (313)
Q Consensus 178 ~k~~-lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~ 225 (313)
++++ +++|++.||+.|+..++.+.++...+... ++.++.|..+....
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~-~v~vv~V~~~~~~~ 70 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDAL-GVELVAVGPESPEK 70 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhc-CeEEEEEeCCCHHH
Confidence 3454 55556999999999999999999999753 57888887765543
No 258
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=96.99 E-value=0.0068 Score=51.84 Aligned_cols=90 Identities=18% Similarity=0.142 Sum_probs=68.1
Q ss_pred ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcc------cccchhhhhCCCCCCCcEEEEEcCCCCceec
Q 021368 51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED------VGKPVSEYFGITGEAPKVLAYTGNDDAKKHI 123 (313)
Q Consensus 51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~------~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~ 123 (313)
.-+++||... +.|.++.|+++.++.++.=.+..+.+|..-.. .+..+++++||..+ |++++.+.+....+.
T Consensus 152 ~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~--Pal~Lv~~~t~~~~p 229 (256)
T TIGR02739 152 YGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYF--PALYLVNPKSQKMSP 229 (256)
T ss_pred eeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccC--ceEEEEECCCCcEEE
Confidence 4577788888 99999999999999999977777777765211 12458889999988 998888877544443
Q ss_pred c-CCCCCHHHHHHHHHHHhc
Q 021368 124 L-DGELTLDKIKTFGEDFLE 142 (313)
Q Consensus 124 ~-~g~~~~~~i~~fi~~~~~ 142 (313)
. .|.++.++|.+=+...+.
T Consensus 230 v~~G~iS~deL~~Ri~~v~~ 249 (256)
T TIGR02739 230 LAYGFISQDELKERILNVLT 249 (256)
T ss_pred EeeccCCHHHHHHHHHHHHh
Confidence 3 588999999877766554
No 259
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=96.99 E-value=0.0062 Score=49.96 Aligned_cols=91 Identities=15% Similarity=0.132 Sum_probs=58.7
Q ss_pred CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEe-------------CC--CcccccchhhhhCCCCCCCcEE
Q 021368 48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQ-------------MD--NEDVGKPVSEYFGITGEAPKVL 111 (313)
Q Consensus 48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd-------------~~--~~~~~~~l~~~~~v~~~~~P~i 111 (313)
.+++.++.||++| +.|+...|.+.++..+....+.++..| .+ .......+.+.||+... |+.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~--P~~ 150 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKI--PYG 150 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCcc--ceE
Confidence 4456788899999 999999999999987764444444321 00 00013366778888877 887
Q ss_pred EEEcCCCCceeccCCC-CCHHHHHHHHHHHhc
Q 021368 112 AYTGNDDAKKHILDGE-LTLDKIKTFGEDFLE 142 (313)
Q Consensus 112 ~~~~~~~~~~~~~~g~-~~~~~i~~fi~~~~~ 142 (313)
++++.++. ..+.|. .+.+.+.+.++..-.
T Consensus 151 ~lID~~G~--I~~~g~~~~~~~le~ll~~l~~ 180 (189)
T TIGR02661 151 VLLDQDGK--IRAKGLTNTREHLESLLEADRE 180 (189)
T ss_pred EEECCCCe--EEEccCCCCHHHHHHHHHHHHc
Confidence 77776542 233443 466777777766533
No 260
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=96.95 E-value=0.0029 Score=40.74 Aligned_cols=59 Identities=22% Similarity=0.352 Sum_probs=46.5
Q ss_pred EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchh---hhhCCCCCCCcEEEEEcCC
Q 021368 53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVS---EYFGITGEAPKVLAYTGND 117 (313)
Q Consensus 53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~---~~~~v~~~~~P~i~~~~~~ 117 (313)
+++|+..| +.|.++.+.+.++ ......+.+..++++... ... ..+++... |++++++.+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDP---ALEKELKRYGVGGV--PTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCCh---HHhhHHHhCCCccc--cEEEEEeCC
Confidence 36788888 9999999999999 444456999999998843 433 37788877 999888765
No 261
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=96.94 E-value=0.0022 Score=49.93 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=35.4
Q ss_pred CCCcEEEEEeCCC-CccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368 177 ESKDVLLEIYAPW-CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 222 (313)
Q Consensus 177 ~~k~~lv~fy~~~-C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~ 222 (313)
.+++++|+||+.| |++|...++.+.++..+++ ++.+..++.+.
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~---~~~vi~Is~d~ 68 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD---NTVVLTISADL 68 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC---CCEEEEEECCC
Confidence 3678999999998 6999999999999999874 46677777653
No 262
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=96.94 E-value=0.0022 Score=50.18 Aligned_cols=43 Identities=9% Similarity=0.125 Sum_probs=35.0
Q ss_pred CcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368 179 KDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 222 (313)
Q Consensus 179 k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~ 222 (313)
++++|.|| ++||+.|....+.+.++..+++.. ++.+..+..+.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~v~vi~vs~d~ 72 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAA-GAEVLGISVDS 72 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC-CCEEEEecCCC
Confidence 77787777 899999999999999999999753 57777676554
No 263
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=96.93 E-value=0.0024 Score=49.85 Aligned_cols=80 Identities=19% Similarity=0.162 Sum_probs=58.0
Q ss_pred CCCccEEEEEee-C-CchhhhhHHHHHHHHhccCe-EEEEEEeCCCcc------------------cccchhhhhCCC--
Q 021368 48 SPIKNQLLLFAV-S-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNED------------------VGKPVSEYFGIT-- 104 (313)
Q Consensus 48 ~~~~~~v~f~~~-~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~~------------------~~~~l~~~~~v~-- 104 (313)
.++..+|.||.. | ++|....|.+.+++++++++ +.++.|..+... ....+.+.+|+.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 456778889999 9 99999999999999987754 666666644332 135778889988
Q ss_pred -------CCCCcEEEEEcCCCCceeccCCCCC
Q 021368 105 -------GEAPKVLAYTGNDDAKKHILDGELT 129 (313)
Q Consensus 105 -------~~~~P~i~~~~~~~~~~~~~~g~~~ 129 (313)
++ |++++++.++...+...|..+
T Consensus 107 ~~~~~~~~~--P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 107 EDPGNGFGI--PTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp CCTTTTSSS--SEEEEEETTSBEEEEEESSBT
T ss_pred cccccCCee--cEEEEEECCCEEEEEEeCCCC
Confidence 77 888788776655555444433
No 264
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=96.93 E-value=0.0023 Score=51.37 Aligned_cols=43 Identities=21% Similarity=0.354 Sum_probs=35.1
Q ss_pred CCCcEEEEEeCCC-CccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368 177 ESKDVLLEIYAPW-CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 222 (313)
Q Consensus 177 ~~k~~lv~fy~~~-C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~ 222 (313)
.+++++|+||++| |++|...++.+.+++..+. ++.+..+.++.
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~---~~~vv~vs~D~ 86 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD---NTVVLCISADL 86 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC---CcEEEEEeCCC
Confidence 3679999999999 9999999999999998873 46666666554
No 265
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=96.91 E-value=0.0065 Score=49.68 Aligned_cols=91 Identities=11% Similarity=0.103 Sum_probs=60.1
Q ss_pred CCCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc---------------------------ccC
Q 021368 177 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---------------------------HRA 228 (313)
Q Consensus 177 ~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~---------------------------~~~ 228 (313)
.+++++|+|| +.||+.|...++.|.++..+|.+. ++.+..+..+.... ..|
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~-g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~y 108 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNF 108 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHc
Confidence 3578999999 999999999999999999998654 34455454443111 234
Q ss_pred CC----CcC--ceEEEEeCCCCCcCceeec--cCcCHHHHHHHHHhcC
Q 021368 229 KS----DGF--PTILFFPAGNKSFDPINVD--VDRTVVALYKFLKKNA 268 (313)
Q Consensus 229 ~v----~~~--P~i~~~~~g~~~~~~~~y~--g~~~~~~l~~fi~~~~ 268 (313)
++ .+. |+.++...+..+.....+. ..++.+++++.|...-
T Consensus 109 gv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq 156 (187)
T PRK10382 109 DNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ 156 (187)
T ss_pred CCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhh
Confidence 54 245 9888886444431222232 2468899999986653
No 266
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=96.90 E-value=0.0034 Score=47.08 Aligned_cols=92 Identities=13% Similarity=0.069 Sum_probs=66.0
Q ss_pred cCCCccEEEEEee----C-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCC---
Q 021368 47 ESPIKNQLLLFAV----S-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDD--- 118 (313)
Q Consensus 47 ~~~~~~~v~f~~~----~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~--- 118 (313)
+..+..+|+|+++ | ..|+..... .++.+-++..+.+...|.+..+ +.+++..++++.+ |+++++....
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~~fv~w~~dv~~~e-g~~la~~l~~~~~--P~~~~l~~~~~~~ 90 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINTRMLFWACSVAKPE-GYRVSQALRERTY--PFLAMIMLKDNRM 90 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHcCEEEEEEecCChH-HHHHHHHhCCCCC--CEEEEEEecCCce
Confidence 4566777889998 4 455444221 2355555667888899998866 7899999999999 9988884222
Q ss_pred CceeccCCCCCHHHHHHHHHHHhc
Q 021368 119 AKKHILDGELTLDKIKTFGEDFLE 142 (313)
Q Consensus 119 ~~~~~~~g~~~~~~i~~fi~~~~~ 142 (313)
....+..|.++.+++...+.....
T Consensus 91 ~vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 91 TIVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHh
Confidence 123456899999999999887754
No 267
>PLN02412 probable glutathione peroxidase
Probab=96.90 E-value=0.009 Score=47.97 Aligned_cols=42 Identities=5% Similarity=-0.017 Sum_probs=35.9
Q ss_pred CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCC
Q 021368 48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMD 89 (313)
Q Consensus 48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~ 89 (313)
.++..+|.||+.| +.|.+..|.|.++.++|.+. +.|+.|+++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~ 71 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN 71 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence 3456777799999 99999999999999999974 888999875
No 268
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=96.87 E-value=0.0053 Score=45.53 Aligned_cols=78 Identities=19% Similarity=0.296 Sum_probs=62.2
Q ss_pred cCcChHHHhhc-CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCC
Q 021368 166 VGNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAG 242 (313)
Q Consensus 166 ~~~~f~~~l~~-~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g 242 (313)
++...++.+.. ..+.++|-|...|-+.|..|-..+.+++..+++ -..++.+|.+.-.. +-|.+...|++.+|-++
T Consensus 10 s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn--fa~IylvdideV~~~~~~~~l~~p~tvmfFfn~ 87 (142)
T KOG3414|consen 10 SGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN--FAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNN 87 (142)
T ss_pred cHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhh--ceEEEEEecchhhhhhhhhcccCCceEEEEEcC
Confidence 34556666643 457899999999999999999999999999987 56777788776554 67899999999888776
Q ss_pred CCC
Q 021368 243 NKS 245 (313)
Q Consensus 243 ~~~ 245 (313)
+..
T Consensus 88 kHm 90 (142)
T KOG3414|consen 88 KHM 90 (142)
T ss_pred ceE
Confidence 553
No 269
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.85 E-value=0.0027 Score=42.73 Aligned_cols=65 Identities=12% Similarity=0.183 Sum_probs=42.6
Q ss_pred EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccC----CCCcCceEEEEeCCCCCcCceeeccCc
Q 021368 182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRA----KSDGFPTILFFPAGNKSFDPINVDVDR 255 (313)
Q Consensus 182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~----~v~~~P~i~~~~~g~~~~~~~~y~g~~ 255 (313)
++.|+++||++|..+...+.+. ++.+..++++.+.. ..+ ....+|++++ +|. .+.| .
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~--------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~------~i~g-~ 64 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER--------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE------HLSG-F 64 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC--------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE------EEec-C
Confidence 5789999999999988877663 34555666665432 222 5679999976 332 4445 4
Q ss_pred CHHHHHHH
Q 021368 256 TVVALYKF 263 (313)
Q Consensus 256 ~~~~l~~f 263 (313)
+...|.++
T Consensus 65 ~~~~l~~~ 72 (73)
T cd02976 65 RPDKLRAL 72 (73)
T ss_pred CHHHHHhh
Confidence 55666655
No 270
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=96.85 E-value=0.011 Score=50.38 Aligned_cols=91 Identities=12% Similarity=0.065 Sum_probs=68.9
Q ss_pred ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcc------cccchhhhhCCCCCCCcEEEEEcCCCCceec
Q 021368 51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED------VGKPVSEYFGITGEAPKVLAYTGNDDAKKHI 123 (313)
Q Consensus 51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~------~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~ 123 (313)
.-+++||... +.|.++.|+++.++.++.=.|..+.+|..-.. .+....+++||..+ |++++.+.+....+.
T Consensus 145 ~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~--PAl~Lv~~~t~~~~p 222 (248)
T PRK13703 145 YGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYF--PALMLVDPKSGSVRP 222 (248)
T ss_pred ceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCccc--ceEEEEECCCCcEEE
Confidence 4577788887 99999999999999999987888888863311 12346678999988 988888776544443
Q ss_pred c-CCCCCHHHHHHHHHHHhcC
Q 021368 124 L-DGELTLDKIKTFGEDFLEG 143 (313)
Q Consensus 124 ~-~g~~~~~~i~~fi~~~~~~ 143 (313)
. .|.++.++|.+=+...+.+
T Consensus 223 v~~G~iS~deL~~Ri~~v~t~ 243 (248)
T PRK13703 223 LSYGFITQDDLAKRFLNVSTD 243 (248)
T ss_pred EeeccCCHHHHHHHHHHHHhc
Confidence 3 6889999998877766543
No 271
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.82 E-value=0.0038 Score=50.71 Aligned_cols=106 Identities=21% Similarity=0.298 Sum_probs=83.1
Q ss_pred CCeEEE-cCcChHHHhhcCC--CcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-ccCCCCcCce
Q 021368 160 GDVKIV-VGNNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPT 235 (313)
Q Consensus 160 ~~v~~l-~~~~f~~~l~~~~--k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-~~~~v~~~P~ 235 (313)
+.|.++ +++.|.+.|...- -..+|..|-+.-..|..+...+.-+|..+. .+.|+++-.+.-.. .+|....+|+
T Consensus 138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP---~vKFckikss~~gas~~F~~n~lP~ 214 (273)
T KOG3171|consen 138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP---IVKFCKIKSSNTGASDRFSLNVLPT 214 (273)
T ss_pred ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC---ceeEEEeeeccccchhhhcccCCce
Confidence 456666 5688888885442 357888999999999999999999987775 48999988665555 7899999999
Q ss_pred EEEEeCCCCCcCceeec---c-CcCHHHHHHHHHhcC
Q 021368 236 ILFFPAGNKSFDPINVD---V-DRTVVALYKFLKKNA 268 (313)
Q Consensus 236 i~~~~~g~~~~~~~~y~---g-~~~~~~l~~fi~~~~ 268 (313)
+++|++|..+.+.+... | ......|.+|++...
T Consensus 215 LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~g 251 (273)
T KOG3171|consen 215 LLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEYG 251 (273)
T ss_pred EEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHcC
Confidence 99999999876555444 2 456788999999874
No 272
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=96.79 E-value=0.0025 Score=51.48 Aligned_cols=87 Identities=10% Similarity=0.067 Sum_probs=58.9
Q ss_pred CCCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------------------------------
Q 021368 177 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------------------------------ 225 (313)
Q Consensus 177 ~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------------------------------ 225 (313)
.++.++|+|| +.||+.|....+.+.++..+|.+. ++.+..|.++....
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 106 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL-NAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKIS 106 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHH
Confidence 3588999999 899999999999999999999753 45555565443210
Q ss_pred ccCCCC------cCceEEEEe-CCCCCcCceeecc----CcCHHHHHHHHHhc
Q 021368 226 HRAKSD------GFPTILFFP-AGNKSFDPINVDV----DRTVVALYKFLKKN 267 (313)
Q Consensus 226 ~~~~v~------~~P~i~~~~-~g~~~~~~~~y~g----~~~~~~l~~fi~~~ 267 (313)
..|++. ..|+.+++. +|.... .+.+ ..+.+.+++.|+..
T Consensus 107 ~~~gv~~~~~~~~~p~~~lID~~G~I~~---~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 107 RDYGVLDEEEGVALRGTFIIDPEGIIRH---ITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HHhCCccccCCceeeEEEEECCCCeEEE---EEecCCCCCCCHHHHHHHHHHh
Confidence 133543 467888885 444432 2222 34678888888765
No 273
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.78 E-value=0.0057 Score=43.60 Aligned_cols=94 Identities=18% Similarity=0.258 Sum_probs=68.9
Q ss_pred cCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc----ccCCCC----cCc-eE
Q 021368 166 VGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSD----GFP-TI 236 (313)
Q Consensus 166 ~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~----~~~~v~----~~P-~i 236 (313)
+..+|..++. ..+.++|.|..+--. -......+.++|...++ .-.++.+||+..+. .++.+. .-| .+
T Consensus 8 d~KdfKKLLR-Tr~NVLvLy~ks~k~-a~~~Lk~~~~~A~~vkG--~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~L 83 (112)
T cd03067 8 DHKDFKKLLR-TRNNVLVLYSKSAKS-AEALLKLLSDVAQAVKG--QGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVEL 83 (112)
T ss_pred chHHHHHHHh-hcCcEEEEEecchhh-HHHHHHHHHHHHHHhcC--ceeEEEEecCChHHHHHHHHHccCCCCCCCcchh
Confidence 3467888774 456677777665432 34555688999999988 56888899998665 456665 344 46
Q ss_pred EEEeCCCCCcCceeeccCcCHHHHHHHHHh
Q 021368 237 LFFPAGNKSFDPINVDVDRTVVALYKFLKK 266 (313)
Q Consensus 237 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~ 266 (313)
.-|++|.... .|+...+..+|+.|+++
T Consensus 84 kHYKdG~fHk---dYdR~~t~kSmv~FlrD 110 (112)
T cd03067 84 KHYKDGDFHT---EYNRQLTFKSMVAFLRD 110 (112)
T ss_pred hcccCCCccc---cccchhhHHHHHHHhhC
Confidence 7788998764 89999999999999975
No 274
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.027 Score=48.70 Aligned_cols=119 Identities=16% Similarity=0.196 Sum_probs=87.1
Q ss_pred HHHHHHHHHhcCCCceEEeCCCcccccccCCCcc---EEEEEeeC-----CchhhhhHHHHHHHHhccC--------eEE
Q 021368 19 KSTIADFVFSNKLPLVTIFTRENAPSVFESPIKN---QLLLFAVS-----NDSEKLLPVFEEAAKSFKG--------KLI 82 (313)
Q Consensus 19 ~~~l~~fi~~~~~~~v~~lt~~~~~~~~~~~~~~---~v~f~~~~-----~~c~~~~~~~~~~a~~~~~--------~v~ 82 (313)
.+.+...+.-.+...|..++++.|..++..+... +++|-+.. .-|..+...|.-+|..+.. ++-
T Consensus 27 s~kv~~L~~~ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklF 106 (331)
T KOG2603|consen 27 SNKVVQLMSWTSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLF 106 (331)
T ss_pred HHHHHHHHhccCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEE
Confidence 4666667766778899999999999987633222 34454444 3477777888888877652 689
Q ss_pred EEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceec---c---CCCCCHHHHHHHHHHHhc
Q 021368 83 FVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHI---L---DGELTLDKIKTFGEDFLE 142 (313)
Q Consensus 83 f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~---~---~g~~~~~~i~~fi~~~~~ 142 (313)
|..||.++ .+++.+.+++... |++..|.+..+++-+ + +-...+|++.+|+++...
T Consensus 107 F~~Vd~~e---~p~~Fq~l~ln~~--P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tk 167 (331)
T KOG2603|consen 107 FCMVDYDE---SPQVFQQLNLNNV--PHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTK 167 (331)
T ss_pred EEEEeccc---cHHHHHHhcccCC--CeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhh
Confidence 99999998 6799999999998 999999665543221 1 113459999999999754
No 275
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.75 E-value=0.0041 Score=43.12 Aligned_cols=56 Identities=11% Similarity=0.266 Sum_probs=39.6
Q ss_pred CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-----ccCCCCcCceEEEEeCCC
Q 021368 178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HRAKSDGFPTILFFPAGN 243 (313)
Q Consensus 178 ~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----~~~~v~~~P~i~~~~~g~ 243 (313)
.+.-+++|..+||+.|......|.+. ++.+-.+|++.+.. ...+...+|.+++ +|.
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~--------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~ 66 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK--------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGK 66 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc--------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCE
Confidence 44557789999999999999888653 35555677766533 2236688999865 444
No 276
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=96.73 E-value=0.008 Score=44.01 Aligned_cols=65 Identities=18% Similarity=0.239 Sum_probs=53.2
Q ss_pred CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCC-CcccccchhhhhC--CCCCCCcEEEEEcCCC
Q 021368 49 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMD-NEDVGKPVSEYFG--ITGEAPKVLAYTGNDD 118 (313)
Q Consensus 49 ~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~-~~~~~~~l~~~~~--v~~~~~P~i~~~~~~~ 118 (313)
....++.||++| +.|+.+.|.+.+++.++...+.|..+|.. . .+.+...++ +..+ |++.++..+.
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~--p~~~~~~~~~ 100 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDE---NPDLAAEFGVAVRSI--PTLLLFKDGK 100 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCC---ChHHHHHHhhhhccC--CeEEEEeCcc
Confidence 445566678999 99999999999999999977899999996 4 558888998 7777 8887665554
No 277
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=96.70 E-value=0.0031 Score=51.69 Aligned_cols=88 Identities=11% Similarity=0.089 Sum_probs=57.6
Q ss_pred CCCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc-------------------------c--ccC
Q 021368 177 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-------------------------H--HRA 228 (313)
Q Consensus 177 ~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~-------------------------~--~~~ 228 (313)
.+++++|+|| +.||+.|...++.+.++..++++. ++.+..+.++... . ..|
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~-gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~ 108 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKL-GVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNF 108 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHh
Confidence 4678999999 999999999999999999998654 3445445443210 0 234
Q ss_pred CCC------cCceEEEEe-CCCCCcCceeec-c--CcCHHHHHHHHHhc
Q 021368 229 KSD------GFPTILFFP-AGNKSFDPINVD-V--DRTVVALYKFLKKN 267 (313)
Q Consensus 229 ~v~------~~P~i~~~~-~g~~~~~~~~y~-g--~~~~~~l~~fi~~~ 267 (313)
++. ..|+.+++. +|... .+.+. . ..+.+.+++.|...
T Consensus 109 gv~~~~~g~~~p~tfiID~~G~I~--~~~~~~~~~~~~~~~ll~~l~~~ 155 (187)
T TIGR03137 109 GVLIEEAGLADRGTFVIDPEGVIQ--AVEITDNGIGRDASELLRKIKAA 155 (187)
T ss_pred CCcccCCCceeeEEEEECCCCEEE--EEEEeCCCCCCCHHHHHHHHHHh
Confidence 554 358888885 45443 22221 1 34778888877543
No 278
>PRK13190 putative peroxiredoxin; Provisional
Probab=96.69 E-value=0.0092 Score=49.51 Aligned_cols=91 Identities=10% Similarity=0.055 Sum_probs=60.0
Q ss_pred CCcEEE-EEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc--------------------c---------cc
Q 021368 178 SKDVLL-EIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--------------------H---------HR 227 (313)
Q Consensus 178 ~k~~lv-~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~--------------------~---------~~ 227 (313)
++.++| +|++.||+.|....+.+.++..+|++. ++.+..+.++... . ..
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~-~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL-GVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 555554 689999999999999999999998754 4555555554210 0 23
Q ss_pred CCCC------cCceEEEEeCCCCCcCceee--ccCcCHHHHHHHHHhcCC
Q 021368 228 AKSD------GFPTILFFPAGNKSFDPINV--DVDRTVVALYKFLKKNAS 269 (313)
Q Consensus 228 ~~v~------~~P~i~~~~~g~~~~~~~~y--~g~~~~~~l~~fi~~~~~ 269 (313)
|++. .+|+.+++..+..+.....| .+.++.+++++.|.....
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~ 155 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQV 155 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 4552 47999999655444111122 235789999999987653
No 279
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=96.67 E-value=0.0038 Score=48.22 Aligned_cols=45 Identities=16% Similarity=0.185 Sum_probs=37.2
Q ss_pred CCCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368 177 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 222 (313)
Q Consensus 177 ~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~ 222 (313)
.+++++|+|| +.||+.|....+.+.++..+++.. ++.++.+..+.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~~~~i~is~d~ 66 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG-GAEVLGVSVDS 66 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence 5788999999 789999999999999999998543 57777776654
No 280
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=96.60 E-value=0.004 Score=49.24 Aligned_cols=74 Identities=24% Similarity=0.545 Sum_probs=45.7
Q ss_pred cChHHHhhcCCCcEEEEEeCCCCccchhhhHH-H--HHHHHHhcCCCcEEEEEEeCCCccc--ccC--------CCCcCc
Q 021368 168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPT-Y--NKLAKHLRGVDSIVIAKMDGTTNEH--HRA--------KSDGFP 234 (313)
Q Consensus 168 ~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~-~--~~la~~~~~~~~v~~~~vd~~~~~~--~~~--------~v~~~P 234 (313)
+.|.. ....+|+++|.++++||.-|..|... | .+++..+.. +++-+++|.+..+. ..| +..++|
T Consensus 28 ea~~~-Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~--~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwP 104 (163)
T PF03190_consen 28 EALEK-AKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR--NFIPVKVDREERPDIDKIYMNAVQAMSGSGGWP 104 (163)
T ss_dssp HHHHH-HHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH--H-EEEEEETTT-HHHHHHHHHHHHHHHS---SS
T ss_pred HHHHH-HHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC--CEEEEEeccccCccHHHHHHHHHHHhcCCCCCC
Confidence 33444 34678999999999999999988764 3 456666755 68888899887655 233 667999
Q ss_pred eEEEE-eCCCC
Q 021368 235 TILFF-PAGNK 244 (313)
Q Consensus 235 ~i~~~-~~g~~ 244 (313)
+.++. ++|..
T Consensus 105 l~vfltPdg~p 115 (163)
T PF03190_consen 105 LTVFLTPDGKP 115 (163)
T ss_dssp EEEEE-TTS-E
T ss_pred ceEEECCCCCe
Confidence 98888 44544
No 281
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.60 E-value=0.011 Score=41.25 Aligned_cols=71 Identities=6% Similarity=0.037 Sum_probs=51.2
Q ss_pred EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-----ccCCCCcCceEEEEeCCCCCcCceeeccCcC
Q 021368 182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HRAKSDGFPTILFFPAGNKSFDPINVDVDRT 256 (313)
Q Consensus 182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~ 256 (313)
+..|..+||++|..+...|.+. ++.+-.+|++.+.. ...+...+|.+++ ++ . ... +++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~--------gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~-~-----~~~-Gf~ 65 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR--------GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GD-L-----SWS-GFR 65 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CC-E-----EEe-cCC
Confidence 6678899999999998888553 57777788876553 2346678999976 32 2 233 478
Q ss_pred HHHHHHHHHhcCC
Q 021368 257 VVALYKFLKKNAS 269 (313)
Q Consensus 257 ~~~l~~fi~~~~~ 269 (313)
.+.|.+.++.+..
T Consensus 66 ~~~l~~~~~~~~~ 78 (81)
T PRK10329 66 PDMINRLHPAPHA 78 (81)
T ss_pred HHHHHHHHHhhhh
Confidence 8999998887653
No 282
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=96.59 E-value=0.0085 Score=40.31 Aligned_cols=70 Identities=16% Similarity=0.251 Sum_probs=50.2
Q ss_pred EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCccc-ccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCH
Q 021368 53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDV-GKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTL 130 (313)
Q Consensus 53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~-~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~ 130 (313)
+.+|+++| ++|+.+.+.|++ .+ +.+..+|.++... ...+++.+|+.+. |++.+. +. .+.| .+.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~~-i~~~~vdi~~~~~~~~~~~~~~~~~~v--P~~~~~--~~----~~~g-~~~ 66 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----KG-IAFEEIDVEKDSAAREEVLKVLGQRGV--PVIVIG--HK----IIVG-FDP 66 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----CC-CeEEEEeccCCHHHHHHHHHHhCCCcc--cEEEEC--CE----EEee-CCH
Confidence 45688899 999999998875 23 7888889876421 1246778999988 999763 22 1445 577
Q ss_pred HHHHHHH
Q 021368 131 DKIKTFG 137 (313)
Q Consensus 131 ~~i~~fi 137 (313)
+.|.+++
T Consensus 67 ~~i~~~i 73 (74)
T TIGR02196 67 EKLDQLL 73 (74)
T ss_pred HHHHHHh
Confidence 8888776
No 283
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.57 E-value=0.0034 Score=40.89 Aligned_cols=49 Identities=14% Similarity=0.304 Sum_probs=38.1
Q ss_pred EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--c---c-CCCCcCceEEE
Q 021368 182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H---R-AKSDGFPTILF 238 (313)
Q Consensus 182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~---~-~~v~~~P~i~~ 238 (313)
+++|..+||+.|..+...|.+. ++.+..+|++.... + + .+..++|++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~--------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK--------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc--------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 5789999999999998888554 47777788887743 2 2 28899999987
No 284
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=96.56 E-value=0.0021 Score=44.98 Aligned_cols=64 Identities=17% Similarity=0.180 Sum_probs=46.8
Q ss_pred ccCCCccEEEEEeeC-CchhhhhHHH---HHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEc
Q 021368 46 FESPIKNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTG 115 (313)
Q Consensus 46 ~~~~~~~~v~f~~~~-~~c~~~~~~~---~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~ 115 (313)
-.++++.+|+|+++| +.|+.+...+ .++...+.+.+.++.||.++.+ ......+ .++ |+++|++
T Consensus 14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~---~~~~~~~-~~~--P~~~~ld 81 (82)
T PF13899_consen 14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDED---PNAQFDR-QGY--PTFFFLD 81 (82)
T ss_dssp HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHH---HHHHHHH-CSS--SEEEEEE
T ss_pred HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCC---hhHHhCC-ccC--CEEEEeC
Confidence 356778899999999 9999998877 4566656677999999998743 2222222 445 9998875
No 285
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.45 E-value=0.012 Score=47.38 Aligned_cols=106 Identities=19% Similarity=0.250 Sum_probs=78.8
Q ss_pred CCCeEEEcCcChHHHhhcC--CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceE
Q 021368 159 DGDVKIVVGNNFDEIVLDE--SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTI 236 (313)
Q Consensus 159 ~~~v~~l~~~~f~~~l~~~--~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i 236 (313)
-+.|..+++..|-+.+... +-.|+|..|...-+.|.-+...+..+|.+|.. +.|+++-.+.. ...|--...||+
T Consensus 90 fG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~---iKFVki~at~c-IpNYPe~nlPTl 165 (240)
T KOG3170|consen 90 FGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ---IKFVKIPATTC-IPNYPESNLPTL 165 (240)
T ss_pred ccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc---ceEEecccccc-cCCCcccCCCeE
Confidence 3679999999999988543 34678889999999999999999999999986 67777654432 245666789999
Q ss_pred EEEeCCCCCcC---ceeecc-CcCHHHHHHHHHhcC
Q 021368 237 LFFPAGNKSFD---PINVDV-DRTVVALYKFLKKNA 268 (313)
Q Consensus 237 ~~~~~g~~~~~---~~~y~g-~~~~~~l~~fi~~~~ 268 (313)
++|..|..... +..+-| ..+.+.+..++-+..
T Consensus 166 ~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qag 201 (240)
T KOG3170|consen 166 LVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQAG 201 (240)
T ss_pred EEeecchHHhheehhhhhcCCcCCHHHHHHHHHhcc
Confidence 99998865431 223444 346778877776654
No 286
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=96.44 E-value=0.023 Score=44.76 Aligned_cols=40 Identities=5% Similarity=0.002 Sum_probs=35.1
Q ss_pred CCccEEEEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeC
Q 021368 49 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQM 88 (313)
Q Consensus 49 ~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~ 88 (313)
++.++|.|+++| +.|....|.+.++..+|.+ .+.|..|+|
T Consensus 22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 22 GKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred CCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 446678899999 9999999999999999986 488999987
No 287
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.41 E-value=0.033 Score=44.97 Aligned_cols=109 Identities=14% Similarity=0.054 Sum_probs=75.9
Q ss_pred HHHHHhcCCCceEEeCCCcccccc---cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchh
Q 021368 23 ADFVFSNKLPLVTIFTRENAPSVF---ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVS 98 (313)
Q Consensus 23 ~~fi~~~~~~~v~~lt~~~~~~~~---~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~ 98 (313)
..-........|.+++..++..-+ +.+..++|.+|... +.|.-+...|.++|.+|.. ++|+.+-.+.+.
T Consensus 82 r~~~~k~kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-iKFVki~at~cI------ 154 (240)
T KOG3170|consen 82 RATAEKAKFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-IKFVKIPATTCI------ 154 (240)
T ss_pred HHHHHHhcccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-ceEEeccccccc------
Confidence 333456677889999887776632 33434445589998 9999999999999999999 899988877643
Q ss_pred hhhCCCCCCCcEEEEEcCCCCc-----eeccCC-CCCHHHHHHHHHHH
Q 021368 99 EYFGITGEAPKVLAYTGNDDAK-----KHILDG-ELTLDKIKTFGEDF 140 (313)
Q Consensus 99 ~~~~v~~~~~P~i~~~~~~~~~-----~~~~~g-~~~~~~i~~fi~~~ 140 (313)
-.|--.. .||+++|..|... ...+.| ..+.+++..|+-+.
T Consensus 155 pNYPe~n--lPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 155 PNYPESN--LPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred CCCcccC--CCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence 1232333 4999888776521 223444 36788888887764
No 288
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=96.40 E-value=0.015 Score=44.34 Aligned_cols=70 Identities=13% Similarity=0.054 Sum_probs=43.5
Q ss_pred cccCCCccEEEEEeeC-CchhhhhHHHH---HHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCc
Q 021368 45 VFESPIKNQLLLFAVS-NDSEKLLPVFE---EAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK 120 (313)
Q Consensus 45 ~~~~~~~~~v~f~~~~-~~c~~~~~~~~---~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~ 120 (313)
.-+.+++.+|.|+++| +.|+.+....- ++.......+..+.++.+..+.+.. ..| .+ .|+++|++.+...
T Consensus 19 Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~---~~g-~~--vPtivFld~~g~v 92 (130)
T cd02960 19 AKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS---PDG-QY--VPRIMFVDPSLTV 92 (130)
T ss_pred HHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC---ccC-cc--cCeEEEECCCCCC
Confidence 3467778889999999 99999977542 3445554345555666543210111 233 33 4999999876543
No 289
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=96.38 E-value=0.0063 Score=44.57 Aligned_cols=82 Identities=12% Similarity=0.190 Sum_probs=60.5
Q ss_pred CceEEeCCCcccccccCCCccEEEEEeeC---CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCC
Q 021368 32 PLVTIFTRENAPSVFESPIKNQLLLFAVS---NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAP 108 (313)
Q Consensus 32 ~~v~~lt~~~~~~~~~~~~~~~v~f~~~~---~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~ 108 (313)
..+..++.++++.........+++|-.+. +.+....=++-++.+.|.+.+..+.+.-.. ...+..+||+...
T Consensus 9 ~g~~~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~---e~~L~~r~gv~~~-- 83 (107)
T PF07449_consen 9 HGWPRVDADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAA---ERALAARFGVRRW-- 83 (107)
T ss_dssp -TEEEE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHH---HHHHHHHHT-TSS--
T ss_pred cCCeeechhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchh---HHHHHHHhCCccC--
Confidence 35678888899988877644444444443 556666668889999999988888888544 4599999999988
Q ss_pred cEEEEEcCCC
Q 021368 109 KVLAYTGNDD 118 (313)
Q Consensus 109 P~i~~~~~~~ 118 (313)
|++++++.|.
T Consensus 84 PaLvf~R~g~ 93 (107)
T PF07449_consen 84 PALVFFRDGR 93 (107)
T ss_dssp SEEEEEETTE
T ss_pred CeEEEEECCE
Confidence 9999999875
No 290
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.35 E-value=0.0064 Score=51.56 Aligned_cols=79 Identities=16% Similarity=0.257 Sum_probs=54.3
Q ss_pred CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEE--Ee-----------------------------------
Q 021368 177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK--MD----------------------------------- 219 (313)
Q Consensus 177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~--vd----------------------------------- 219 (313)
+++.+++.|..+.|++|+.+.+.+.++... ++.+.. +.
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~-----~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~ 180 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL-----GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVS 180 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC-----CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCC
Confidence 467889999999999999999888876431 122211 11
Q ss_pred ---CCCccc------ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhc
Q 021368 220 ---GTTNEH------HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 267 (313)
Q Consensus 220 ---~~~~~~------~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~ 267 (313)
|..... ++++++++|+++ +.+|. .+.|....+.|.++|.+.
T Consensus 181 ~~~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~------~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 181 PASCDVDIADHYALGVQFGVQGTPAIV-LSNGT------LVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccccchHHHhHHHHHHcCCccccEEE-EcCCe------EeeCCCCHHHHHHHHHHc
Confidence 110000 345899999998 56665 457878899999999864
No 291
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.31 E-value=0.013 Score=39.63 Aligned_cols=64 Identities=13% Similarity=0.200 Sum_probs=42.7
Q ss_pred EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-c----cCCCCcCceEEEEeCCCCCcCceeeccCcC
Q 021368 182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-H----RAKSDGFPTILFFPAGNKSFDPINVDVDRT 256 (313)
Q Consensus 182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-~----~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~ 256 (313)
+++|..+||+.|......+.+. ++.+..+|++.+.. . ..+...+|.+++ +|.. . | .
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~--------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi--~g~~------i-g--g 63 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN--------GISYEEIPLGKDITGRSLRAVTGAMTVPQVFI--DGEL------I-G--G 63 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc--------CCCcEEEECCCChhHHHHHHHhCCCCcCeEEE--CCEE------E-e--C
Confidence 6788999999999998888753 35566667765543 1 236678999854 4443 2 2 3
Q ss_pred HHHHHHHH
Q 021368 257 VVALYKFL 264 (313)
Q Consensus 257 ~~~l~~fi 264 (313)
.+.|.+|+
T Consensus 64 ~~~l~~~l 71 (72)
T cd03029 64 SDDLEKYF 71 (72)
T ss_pred HHHHHHHh
Confidence 56666665
No 292
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=96.28 E-value=0.021 Score=45.03 Aligned_cols=40 Identities=10% Similarity=0.017 Sum_probs=34.0
Q ss_pred CCccEEEEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCC
Q 021368 49 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMD 89 (313)
Q Consensus 49 ~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~ 89 (313)
++.++|.|++.| + |....|.|.++.++|.+ .+.|+.|.++
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 457778899999 8 99999999999999975 4888888764
No 293
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.24 E-value=0.032 Score=40.91 Aligned_cols=91 Identities=14% Similarity=0.200 Sum_probs=59.1
Q ss_pred cChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceEEEEeCCC----
Q 021368 168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGN---- 243 (313)
Q Consensus 168 ~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i~~~~~g~---- 243 (313)
+.+.+++. ..+.++|-|+...-. .....|.++|..++. .+.|+..... .....+++ .|++++|+...
T Consensus 9 ~~l~~f~~-~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~--d~~F~~~~~~-~~~~~~~~--~~~ivl~~p~~~~~k 79 (104)
T cd03069 9 AEFEKFLS-DDDASVVGFFEDEDS---KLLSEFLKAADTLRE--SFRFAHTSDK-QLLEKYGY--GEGVVLFRPPRLSNK 79 (104)
T ss_pred HHHHHHhc-cCCcEEEEEEcCCCc---hHHHHHHHHHHhhhh--cCEEEEEChH-HHHHhcCC--CCceEEEechhhhcc
Confidence 45666553 456666666654322 567889999999987 5777654422 22356666 68888884311
Q ss_pred CCcCceeeccCcCHHHHHHHHHhc
Q 021368 244 KSFDPINVDVDRTVVALYKFLKKN 267 (313)
Q Consensus 244 ~~~~~~~y~g~~~~~~l~~fi~~~ 267 (313)
.-...+.|.|..+.+.|.+||..+
T Consensus 80 ~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 80 FEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred cCcccccccCcCCHHHHHHHHHhh
Confidence 111335799988899999999876
No 294
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.22 E-value=0.022 Score=41.78 Aligned_cols=88 Identities=19% Similarity=0.238 Sum_probs=59.2
Q ss_pred cccccccCCCccEEEEEeeCCchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcC----
Q 021368 41 NAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGN---- 116 (313)
Q Consensus 41 ~~~~~~~~~~~~~v~f~~~~~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~---- 116 (313)
.++.++......+|-||..... .....|.++|..+.....|+..... .+...+++ . |.++++++
T Consensus 10 ~l~~f~~~~~~~Vvg~f~~~~~--~~~~~F~~vA~~~R~d~~F~~~~~~------~~~~~~~~--~--~~ivl~~p~~~~ 77 (104)
T cd03069 10 EFEKFLSDDDASVVGFFEDEDS--KLLSEFLKAADTLRESFRFAHTSDK------QLLEKYGY--G--EGVVLFRPPRLS 77 (104)
T ss_pred HHHHHhccCCcEEEEEEcCCCc--hHHHHHHHHHHhhhhcCEEEEEChH------HHHHhcCC--C--CceEEEechhhh
Confidence 3455555555666667766421 5778888999999877888775542 56778888 4 44555532
Q ss_pred --CCCceeccCCCCCHHHHHHHHHHH
Q 021368 117 --DDAKKHILDGELTLDKIKTFGEDF 140 (313)
Q Consensus 117 --~~~~~~~~~g~~~~~~i~~fi~~~ 140 (313)
-......|.|..+.+.|.+||...
T Consensus 78 ~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 78 NKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred cccCcccccccCcCCHHHHHHHHHhh
Confidence 112344589989999999999763
No 295
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.20 E-value=0.034 Score=40.57 Aligned_cols=91 Identities=14% Similarity=0.171 Sum_probs=61.8
Q ss_pred CCccccccc-CCCccEEEEEeeCCchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCC
Q 021368 39 RENAPSVFE-SPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGND 117 (313)
Q Consensus 39 ~~~~~~~~~-~~~~~~v~f~~~~~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~ 117 (313)
.+.++.+.. .....+|-||..... .....|.++|..+.....|+..... .+...+++. . |.+.++...
T Consensus 8 ~~~~e~~~~~~~~~~Vvg~f~~~~~--~~~~~F~~vA~~~R~d~~F~~~~~~------~~~~~~~~~-~--~~i~l~~~~ 76 (102)
T cd03066 8 ERELQAFENIEDDIKLIGYFKSEDS--EHYKAFEEAAEEFHPYIKFFATFDS------KVAKKLGLK-M--NEVDFYEPF 76 (102)
T ss_pred HHHHHHHhcccCCeEEEEEECCCCC--HHHHHHHHHHHhhhcCCEEEEECcH------HHHHHcCCC-C--CcEEEeCCC
Confidence 344666776 555566667766422 4667899999999777888765532 566777774 3 667677552
Q ss_pred CCceecc-CCCCCHHHHHHHHHHH
Q 021368 118 DAKKHIL-DGELTLDKIKTFGEDF 140 (313)
Q Consensus 118 ~~~~~~~-~g~~~~~~i~~fi~~~ 140 (313)
......| .|..+.+.|.+||...
T Consensus 77 ~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 77 MEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CCCCcccCCCCCCHHHHHHHHHHh
Confidence 3334568 7888999999999753
No 296
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.18 E-value=0.019 Score=55.36 Aligned_cols=117 Identities=9% Similarity=0.074 Sum_probs=84.1
Q ss_pred ccccCCCCCCHHHHHHHHHhc--CCCceEEeCCCcccccccCCCccEE-EEEeeC-CchhhhhHHHHHHHHhccCeEEEE
Q 021368 9 ISYFADGKFDKSTIADFVFSN--KLPLVTIFTRENAPSVFESPIKNQL-LLFAVS-NDSEKLLPVFEEAAKSFKGKLIFV 84 (313)
Q Consensus 9 ~~~y~~g~~~~~~l~~fi~~~--~~~~v~~lt~~~~~~~~~~~~~~~v-~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~ 84 (313)
.+.| .|==.=+++.+||..- ....-..|+.+..+.+-.-..+.-| +|++++ +.|......+.+++....+ |..-
T Consensus 434 ~i~f-~g~P~G~Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~-i~~~ 511 (555)
T TIGR03143 434 GLKF-HGVPSGHELNSFILALYNAAGPGQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPN-VEAE 511 (555)
T ss_pred ceEE-EecCccHhHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCC-ceEE
Confidence 4778 6665556666666432 1223345666665555443345445 467888 9999999999999999886 8899
Q ss_pred EEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHH
Q 021368 85 YVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFG 137 (313)
Q Consensus 85 ~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi 137 (313)
.+|... .++++++|+|.+. |++++ ++ ...+.|..+.++|..++
T Consensus 512 ~i~~~~---~~~~~~~~~v~~v--P~~~i-~~----~~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 512 MIDVSH---FPDLKDEYGIMSV--PAIVV-DD----QQVYFGKKTIEEMLELI 554 (555)
T ss_pred EEECcc---cHHHHHhCCceec--CEEEE-CC----EEEEeeCCCHHHHHHhh
Confidence 999988 6699999999988 99965 22 23457888999998876
No 297
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.15 E-value=0.011 Score=39.56 Aligned_cols=49 Identities=14% Similarity=0.238 Sum_probs=35.4
Q ss_pred EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--c----cCCCCcCceEEE
Q 021368 182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKSDGFPTILF 238 (313)
Q Consensus 182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~----~~~v~~~P~i~~ 238 (313)
++.|+++||++|+.+...+.+.. +.+..+|+..+.. . ..+...+|++++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~--------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~ 56 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG--------IEFEEIDILEDGELREELKELSGWPTVPQIFI 56 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC--------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 56789999999999998888763 5566778776653 2 234567787754
No 298
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.04 Score=42.76 Aligned_cols=90 Identities=8% Similarity=0.111 Sum_probs=63.6
Q ss_pred cCCCccEEEEEeeC-CchhhhhHHHH---HHHHhccCeEEEEEEeCCCccc-------------ccchhhhhCCCCCCCc
Q 021368 47 ESPIKNQLLLFAVS-NDSEKLLPVFE---EAAKSFKGKLIFVYVQMDNEDV-------------GKPVSEYFGITGEAPK 109 (313)
Q Consensus 47 ~~~~~~~v~f~~~~-~~c~~~~~~~~---~~a~~~~~~v~f~~vd~~~~~~-------------~~~l~~~~~v~~~~~P 109 (313)
-.++..+++|-++. ..|.++...+. ++-+-+.+.+.+++++.+.+.. ..+|++.|+|+++ |
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrst--P 117 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRST--P 117 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccC--c
Confidence 34444455566666 88998877654 3556677778888888655431 2489999999999 9
Q ss_pred EEEEEcCCCCceeccCCCCCHHHHHHHHH
Q 021368 110 VLAYTGNDDAKKHILDGELTLDKIKTFGE 138 (313)
Q Consensus 110 ~i~~~~~~~~~~~~~~g~~~~~~i~~fi~ 138 (313)
++++++..+...+..-|.+..+.+..-+.
T Consensus 118 tfvFfdk~Gk~Il~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 118 TFVFFDKTGKTILELPGYMPPEQFLAVLK 146 (182)
T ss_pred eEEEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence 99999887655666788888887654443
No 299
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=96.13 E-value=0.044 Score=44.54 Aligned_cols=85 Identities=12% Similarity=0.084 Sum_probs=59.3
Q ss_pred CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEE------EEEeCCCcc--------------------------ccc
Q 021368 49 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIF------VYVQMDNED--------------------------VGK 95 (313)
Q Consensus 49 ~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f------~~vd~~~~~--------------------------~~~ 95 (313)
++.++|-|++.| ++|+.-.|.+..++.+ + +.+ ..||.++.. ...
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~-~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g 135 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAA--K-FPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKG 135 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHc--C-CCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcc
Confidence 557788899999 9999999999999653 1 223 444444310 012
Q ss_pred chhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHH
Q 021368 96 PVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFG 137 (313)
Q Consensus 96 ~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi 137 (313)
.+...+|+.+. |+++++++.++...+...|.++.+++.+++
T Consensus 136 ~v~~~~gv~~~-P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 136 AVKNAWQLNSE-DSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred hHHHhcCCCCC-CceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 45568899888 556467777666677788999999887743
No 300
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=96.13 E-value=0.018 Score=43.28 Aligned_cols=44 Identities=16% Similarity=0.195 Sum_probs=36.9
Q ss_pred CCCccEEEEEee-C-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCc
Q 021368 48 SPIKNQLLLFAV-S-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNE 91 (313)
Q Consensus 48 ~~~~~~v~f~~~-~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~ 91 (313)
.+++.+|.||.. | +.|....+.|.++..+++. .+.|+.|..+..
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~ 70 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDP 70 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSH
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccc
Confidence 446788889999 8 9999999999999999985 388888887654
No 301
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.11 E-value=0.0095 Score=41.35 Aligned_cols=54 Identities=11% Similarity=0.346 Sum_probs=37.4
Q ss_pred EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-------ccCCCCcCceEEEEeCCC
Q 021368 182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-------HRAKSDGFPTILFFPAGN 243 (313)
Q Consensus 182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-------~~~~v~~~P~i~~~~~g~ 243 (313)
+++|+++||+.|..+...+.++.. .+.+..++...+.. ...+..++|.+++ +|.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~--~g~ 62 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV------KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI--GGK 62 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC------CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE--CCE
Confidence 578999999999999999988744 24555566554421 2346778899744 444
No 302
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.09 E-value=0.065 Score=39.07 Aligned_cols=97 Identities=11% Similarity=0.154 Sum_probs=61.4
Q ss_pred eEEE-cCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceEEEEe
Q 021368 162 VKIV-VGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFP 240 (313)
Q Consensus 162 v~~l-~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i~~~~ 240 (313)
++.+ +.+.++.++......++|-|+...-. .....|.++|..++. .+.|+... +......+++ ..|++.+|+
T Consensus 2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~--d~~F~~~~-~~~~~~~~~~-~~~~i~l~~ 74 (102)
T cd03066 2 VEIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHP--YIKFFATF-DSKVAKKLGL-KMNEVDFYE 74 (102)
T ss_pred ceEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhc--CCEEEEEC-cHHHHHHcCC-CCCcEEEeC
Confidence 3445 33456776631455555555544322 566789999999987 56776433 2222244555 469999997
Q ss_pred CCCCCcCceee-ccCcCHHHHHHHHHhc
Q 021368 241 AGNKSFDPINV-DVDRTVVALYKFLKKN 267 (313)
Q Consensus 241 ~g~~~~~~~~y-~g~~~~~~l~~fi~~~ 267 (313)
.... .++.| .|..+.+.|..||..+
T Consensus 75 ~~~e--~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 75 PFME--EPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CCCC--CCcccCCCCCCHHHHHHHHHHh
Confidence 6333 34579 7788999999999875
No 303
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=96.06 E-value=0.061 Score=43.31 Aligned_cols=92 Identities=15% Similarity=0.106 Sum_probs=60.9
Q ss_pred CCccEEEEE-eeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcc-------------------------cccchhhh
Q 021368 49 PIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED-------------------------VGKPVSEY 100 (313)
Q Consensus 49 ~~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~-------------------------~~~~l~~~ 100 (313)
++..+|.|| ..| +.|....+.|.+++.+|.. .+.++.|.++... ....+.+.
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 108 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRD 108 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHHH
Confidence 445666777 688 9999999999999999975 3666666654311 12356677
Q ss_pred hCCC----CCCCcEEEEEcCCCCceecc----CCCCCHHHHHHHHHHH
Q 021368 101 FGIT----GEAPKVLAYTGNDDAKKHIL----DGELTLDKIKTFGEDF 140 (313)
Q Consensus 101 ~~v~----~~~~P~i~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~ 140 (313)
||+. ++..|+.++++.+....+.+ ...++.++|.+.|...
T Consensus 109 ~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 109 YGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred hCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8886 22347777887666444444 2235677788888664
No 304
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=96.06 E-value=0.018 Score=39.00 Aligned_cols=64 Identities=11% Similarity=0.107 Sum_probs=43.2
Q ss_pred EEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-----ccCCCCcCceEEEEeCCCCCcCceeeccCcCH
Q 021368 183 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HRAKSDGFPTILFFPAGNKSFDPINVDVDRTV 257 (313)
Q Consensus 183 v~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~ 257 (313)
.+|..++|+.|......+.+. ++.+-.+|++.+.. ...+..++|.+++ +|.. .+ |+.+.
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~~-----~~-~G~~~ 65 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH--------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGDL-----SW-SGFRP 65 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCCc-----EE-eccCH
Confidence 568889999999998888753 46677778776653 2347778999866 4432 23 33566
Q ss_pred HHHHH
Q 021368 258 VALYK 262 (313)
Q Consensus 258 ~~l~~ 262 (313)
+.|.+
T Consensus 66 ~~~~~ 70 (72)
T TIGR02194 66 DKLKA 70 (72)
T ss_pred HHHHh
Confidence 65543
No 305
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=95.91 E-value=0.026 Score=44.11 Aligned_cols=68 Identities=18% Similarity=0.254 Sum_probs=50.6
Q ss_pred CCccEEEEEeeC-CchhhhhHHHHHHHHhccCe---EEEEEEeCCCcc----------------------cccchhhhhC
Q 021368 49 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK---LIFVYVQMDNED----------------------VGKPVSEYFG 102 (313)
Q Consensus 49 ~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~---v~f~~vd~~~~~----------------------~~~~l~~~~~ 102 (313)
++.+.++|-+-| ++|+.+.|++.++....... +-++.|..+.+. --.+++.+|+
T Consensus 33 gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~ 112 (157)
T KOG2501|consen 33 GKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYE 112 (157)
T ss_pred CcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhcc
Confidence 446667788888 99999999999999888875 666666654432 0156778899
Q ss_pred CCCCCCcEEEEEcCCC
Q 021368 103 ITGEAPKVLAYTGNDD 118 (313)
Q Consensus 103 v~~~~~P~i~~~~~~~ 118 (313)
|.+. |++.+...++
T Consensus 113 v~~i--P~l~i~~~dG 126 (157)
T KOG2501|consen 113 VKGI--PALVILKPDG 126 (157)
T ss_pred cCcC--ceeEEecCCC
Confidence 9988 8888877654
No 306
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=95.83 E-value=0.067 Score=40.36 Aligned_cols=75 Identities=20% Similarity=0.333 Sum_probs=56.2
Q ss_pred CcChHHHhh-cCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCce-EEEEeCC
Q 021368 167 GNNFDEIVL-DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPT-ILFFPAG 242 (313)
Q Consensus 167 ~~~f~~~l~-~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~-i~~~~~g 242 (313)
+-..++.++ ...+.++|-|...|-+.|.++-..+.+++.+.++ -..++.+|.+.-+. +-|.+. -|. +.||-++
T Consensus 8 ~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~--~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rn 84 (133)
T PF02966_consen 8 GWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN--FAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRN 84 (133)
T ss_dssp HHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTTHCCHHHTTS--SSEEEEEEETT
T ss_pred cchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc--ceEEEEEEcccchhhhcccccC-CCeEEEEEecC
Confidence 345566665 4468899999999999999999999999999988 68889999997665 567777 674 5555344
Q ss_pred CC
Q 021368 243 NK 244 (313)
Q Consensus 243 ~~ 244 (313)
+.
T Consensus 85 kh 86 (133)
T PF02966_consen 85 KH 86 (133)
T ss_dssp EE
T ss_pred eE
Confidence 43
No 307
>PTZ00256 glutathione peroxidase; Provisional
Probab=95.80 E-value=0.097 Score=42.64 Aligned_cols=41 Identities=15% Similarity=0.106 Sum_probs=33.0
Q ss_pred CCccE-EEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCC
Q 021368 49 PIKNQ-LLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMD 89 (313)
Q Consensus 49 ~~~~~-v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~ 89 (313)
++.++ +++++.| +.|....|.|.++.++|.+. +.|+.|+|+
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 33443 4468999 99999999999999999863 888888874
No 308
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=95.72 E-value=0.02 Score=39.90 Aligned_cols=79 Identities=11% Similarity=0.122 Sum_probs=55.4
Q ss_pred EEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeeccCcCHH
Q 021368 181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVV 258 (313)
Q Consensus 181 ~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~ 258 (313)
.+++|..+.|.-|..+...+..+... ..+.+-.+|++.++. .+|+. .+|.+.+=..+... ......+..+.+
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~----~~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~-~~~~~~~~~d~~ 74 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAE----FPFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFK-EQEELKWRFDEE 74 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTT----STCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGC-TSEEEESSB-HH
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhh----cCceEEEEECCCCHHHHHHhcC-CCCEEEEcCccccc-ccceeCCCCCHH
Confidence 36789999999999998888876432 258899999997776 67884 89997762211111 123677789999
Q ss_pred HHHHHHH
Q 021368 259 ALYKFLK 265 (313)
Q Consensus 259 ~l~~fi~ 265 (313)
.|.+||+
T Consensus 75 ~L~~~L~ 81 (81)
T PF05768_consen 75 QLRAWLE 81 (81)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9999984
No 309
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=95.72 E-value=0.052 Score=44.78 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=23.0
Q ss_pred CCCcEEEEEeCCCCccchhhhHHHHH
Q 021368 177 ESKDVLLEIYAPWCGHCQAFEPTYNK 202 (313)
Q Consensus 177 ~~k~~lv~fy~~~C~~C~~~~~~~~~ 202 (313)
+.+..++.|..+.|++|+.+.+.+..
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh
Confidence 36789999999999999999988875
No 310
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=95.71 E-value=0.019 Score=38.94 Aligned_cols=49 Identities=16% Similarity=0.210 Sum_probs=35.9
Q ss_pred EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--c----cCCCCcCceEEE
Q 021368 182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKSDGFPTILF 238 (313)
Q Consensus 182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~----~~~v~~~P~i~~ 238 (313)
++.|+.+||+.|+.+...|.+. ++.+..+|+..... . ..+-..+|.+++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~--------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i 57 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK--------GLPYVEINIDIFPERKAELEERTGSSVVPQIFF 57 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 5778999999999998888864 46666778876553 1 224567899865
No 311
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.66 E-value=0.044 Score=52.39 Aligned_cols=121 Identities=10% Similarity=-0.030 Sum_probs=86.8
Q ss_pred cccccCCCCCCHHHHHHHHHhc--CCCceEEeCCCcccccccCCCcc-EEEEEeeC-CchhhhhHHHHHHHHhccCeEEE
Q 021368 8 KISYFADGKFDKSTIADFVFSN--KLPLVTIFTRENAPSVFESPIKN-QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIF 83 (313)
Q Consensus 8 ~~~~y~~g~~~~~~l~~fi~~~--~~~~v~~lt~~~~~~~~~~~~~~-~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f 83 (313)
..+.| +|==.=+++..||..- ....-..|+++..+.+-.-..+. +.+|+++. +.|......+.+++.... .|.+
T Consensus 73 ~~i~f-~g~P~g~Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~-~i~~ 150 (517)
T PRK15317 73 TGVRF-AGIPMGHEFTSLVLALLQVGGHPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP-NITH 150 (517)
T ss_pred ceEEE-EecCccHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC-CceE
Confidence 35788 7766667777776533 22334456666655544333344 55688888 999999999999999766 4889
Q ss_pred EEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021368 84 VYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF 140 (313)
Q Consensus 84 ~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~ 140 (313)
-.+|... +++++++|++... |++++ ++ ...+.|..+.+.|.+.+...
T Consensus 151 ~~id~~~---~~~~~~~~~v~~V--P~~~i-~~----~~~~~g~~~~~~~~~~~~~~ 197 (517)
T PRK15317 151 TMIDGAL---FQDEVEARNIMAV--PTVFL-NG----EEFGQGRMTLEEILAKLDTG 197 (517)
T ss_pred EEEEchh---CHhHHHhcCCccc--CEEEE-CC----cEEEecCCCHHHHHHHHhcc
Confidence 9999988 6799999999988 99954 32 23467888888887777653
No 312
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=95.65 E-value=0.18 Score=36.49 Aligned_cols=86 Identities=17% Similarity=0.247 Sum_probs=64.1
Q ss_pred cEEEEEeeC-CchhhhhHHHHHHHHhccC--eEEEEEEeCCCcccccchh----hhhCCCCCCCcEEEEEcCCC--Ccee
Q 021368 52 NQLLLFAVS-NDSEKLLPVFEEAAKSFKG--KLIFVYVQMDNEDVGKPVS----EYFGITGEAPKVLAYTGNDD--AKKH 122 (313)
Q Consensus 52 ~~v~f~~~~-~~c~~~~~~~~~~a~~~~~--~v~f~~vd~~~~~~~~~l~----~~~~v~~~~~P~i~~~~~~~--~~~~ 122 (313)
+++.|-... +.-.++.++++++|+.... .+.|+.||-++.. -+. +-|||.-. .|.|.+.+-.. +.-+
T Consensus 23 ~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FP---llv~yWektF~IDl~-~PqIGVV~vtdadSvW~ 98 (120)
T cd03074 23 HIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFP---LLVPYWEKTFGIDLF-RPQIGVVNVTDADSVWM 98 (120)
T ss_pred eEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCc---hhhHHHHhhcCcccC-CCceeeEecccccceeE
Confidence 344454444 7889999999999998885 6999999999854 444 56788866 69988887544 3344
Q ss_pred ccCCC---CCHHHHHHHHHHHh
Q 021368 123 ILDGE---LTLDKIKTFGEDFL 141 (313)
Q Consensus 123 ~~~g~---~~~~~i~~fi~~~~ 141 (313)
.+.+. .+.+.|..|+++.+
T Consensus 99 ~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 99 EMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred ecccccccCcHHHHHHHHHhhC
Confidence 45443 78999999998864
No 313
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=95.60 E-value=0.022 Score=38.77 Aligned_cols=49 Identities=14% Similarity=0.239 Sum_probs=34.8
Q ss_pred EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--cc----CCCC-cCceEEE
Q 021368 182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HR----AKSD-GFPTILF 238 (313)
Q Consensus 182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~----~~v~-~~P~i~~ 238 (313)
+++|..++|+.|..+...|.+. ++.+-.+|++.+.. +. .+.. ++|.+++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i 57 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK--------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI 57 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE
Confidence 5678899999999998888763 45666677776533 22 3444 8898765
No 314
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=95.58 E-value=0.015 Score=40.20 Aligned_cols=49 Identities=10% Similarity=0.279 Sum_probs=34.3
Q ss_pred EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--cc----CCCCcCceEEE
Q 021368 182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HR----AKSDGFPTILF 238 (313)
Q Consensus 182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~----~~v~~~P~i~~ 238 (313)
+++|+.+||+.|..+...+.+. ++.+-.+|++.+.. +. .+..++|++++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~--------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i 55 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK--------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI 55 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc--------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE
Confidence 3578899999999999888764 34555566665543 22 35678899855
No 315
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=95.51 E-value=0.037 Score=37.67 Aligned_cols=68 Identities=6% Similarity=0.059 Sum_probs=43.5
Q ss_pred EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhh-----hCCCCCCCcEEEEEcCCCCceeccCC
Q 021368 53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEY-----FGITGEAPKVLAYTGNDDAKKHILDG 126 (313)
Q Consensus 53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~-----~~v~~~~~P~i~~~~~~~~~~~~~~g 126 (313)
+++|+++| ++|+++.+.|.+++. .+..+|.++.. ..... +++... |++ +++++. . -.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~------~~~~idi~~~~---~~~~~~~~~~~~~~~v--P~i-~~~~g~--~---l~ 64 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGA------AYEWVDIEEDE---GAADRVVSVNNGNMTV--PTV-KFADGS--F---LT 64 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCC------ceEEEeCcCCH---hHHHHHHHHhCCCcee--CEE-EECCCe--E---ec
Confidence 56789999 999999999887643 34567877633 33333 277777 998 455442 1 12
Q ss_pred CCCHHHHHHHH
Q 021368 127 ELTLDKIKTFG 137 (313)
Q Consensus 127 ~~~~~~i~~fi 137 (313)
..+...+...+
T Consensus 65 ~~~~~~~~~~l 75 (77)
T TIGR02200 65 NPSAAQVKAKL 75 (77)
T ss_pred CCCHHHHHHHh
Confidence 45556665544
No 316
>PRK15000 peroxidase; Provisional
Probab=95.45 E-value=0.032 Score=46.15 Aligned_cols=90 Identities=8% Similarity=0.108 Sum_probs=61.1
Q ss_pred CCCcEEEEEeCC-CCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------------------------------
Q 021368 177 ESKDVLLEIYAP-WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------------------------------ 225 (313)
Q Consensus 177 ~~k~~lv~fy~~-~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------------------------------ 225 (313)
.++.++|+||.. ||+.|....+.|.++..+|+.. ++.+..+.++....
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~-g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia 111 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR-GVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQ 111 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHH
Confidence 468999999994 9999999999999999999754 46666666553210
Q ss_pred ccCCCC------cCceEEEEeCCCCCcCceeec--cCcCHHHHHHHHHhc
Q 021368 226 HRAKSD------GFPTILFFPAGNKSFDPINVD--VDRTVVALYKFLKKN 267 (313)
Q Consensus 226 ~~~~v~------~~P~i~~~~~g~~~~~~~~y~--g~~~~~~l~~fi~~~ 267 (313)
..|++. ..|+.+++.....+.....+. -.++.+++++.|...
T Consensus 112 ~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 112 KAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 124554 578888886443331111121 146889999999764
No 317
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=95.43 E-value=0.17 Score=37.76 Aligned_cols=91 Identities=13% Similarity=0.113 Sum_probs=66.8
Q ss_pred ccEEE-EEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccC-C-
Q 021368 51 KNQLL-LFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILD-G- 126 (313)
Q Consensus 51 ~~~v~-f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~-g- 126 (313)
..+|+ |=.+| +.|-.+-..+.++|.....-+.++-||.++ -+.+.+-|++.. ||++++|-+++.-...+. |
T Consensus 24 rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~Iylvdide---V~~~~~~~~l~~--p~tvmfFfn~kHmkiD~gtgd 98 (142)
T KOG3414|consen 24 RLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDE---VPDFVKMYELYD--PPTVMFFFNNKHMKIDLGTGD 98 (142)
T ss_pred eEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecch---hhhhhhhhcccC--CceEEEEEcCceEEEeeCCCC
Confidence 34444 55566 899999999999999999988899999987 679999999974 488877766553333331 2
Q ss_pred -------CCCHHHHHHHHHHHhcCCCC
Q 021368 127 -------ELTLDKIKTFGEDFLEGKLK 146 (313)
Q Consensus 127 -------~~~~~~i~~fi~~~~~~~~~ 146 (313)
-.+.+.+.+-++....|..+
T Consensus 99 n~Kin~~~~~kq~~Idiie~iyRga~K 125 (142)
T KOG3414|consen 99 NNKINFAFEDKQEFIDIIETIYRGARK 125 (142)
T ss_pred CceEEEEeccHHHHHHHHHHHHHhhhc
Confidence 14577788888777665553
No 318
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=95.37 E-value=0.03 Score=40.67 Aligned_cols=55 Identities=13% Similarity=0.207 Sum_probs=35.7
Q ss_pred cEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-----cc----CCCCcCceEEEEeCCCC
Q 021368 180 DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HR----AKSDGFPTILFFPAGNK 244 (313)
Q Consensus 180 ~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----~~----~~v~~~P~i~~~~~g~~ 244 (313)
.-++.|..+||++|..+...|.+. ++.+..+|++..+. .. -+..++|.+++ +|..
T Consensus 8 ~~Vvvysk~~Cp~C~~ak~~L~~~--------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi--~g~~ 71 (99)
T TIGR02189 8 KAVVIFSRSSCCMCHVVKRLLLTL--------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV--GGKL 71 (99)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHc--------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE--CCEE
Confidence 346779999999999998877765 23344556554432 11 24578899854 5544
No 319
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=95.34 E-value=0.035 Score=38.54 Aligned_cols=56 Identities=9% Similarity=-0.021 Sum_probs=39.4
Q ss_pred EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCccc--ccchhhhhCCCCCCCcEEE
Q 021368 53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDV--GKPVSEYFGITGEAPKVLA 112 (313)
Q Consensus 53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~--~~~l~~~~~v~~~~~P~i~ 112 (313)
+++|+++| +.|.++.+.|.++. ..+.+.+..+|.+.... ...+.+..|+... |+++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~v--P~v~ 59 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTV--PNIF 59 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCC--CeEE
Confidence 36789999 99999999999887 44446667776654210 0125566788877 9983
No 320
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=95.26 E-value=0.035 Score=40.69 Aligned_cols=82 Identities=16% Similarity=0.168 Sum_probs=53.5
Q ss_pred CeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhH---HHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCce
Q 021368 161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEP---TYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPT 235 (313)
Q Consensus 161 ~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~---~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~ 235 (313)
....++.++++.++.. ....+ .|.+..|..|.+... ++-++.+.|.+ .+..+.+.-..... .+|++..+|+
T Consensus 10 g~~~vd~~~ld~~l~~-~~~~v-lf~~gDp~r~~E~~DvaVILPEL~~af~~--~~~~avv~~~~e~~L~~r~gv~~~Pa 85 (107)
T PF07449_consen 10 GWPRVDADTLDAFLAA-PGDAV-LFFAGDPARFPETADVAVILPELVKAFPG--RFRGAVVARAAERALAARFGVRRWPA 85 (107)
T ss_dssp TEEEE-CCCHHHHHHC-CSCEE-EEESS-TTTSTTCCHHHHHHHHHHCTSTT--SEEEEEEEHHHHHHHHHHHT-TSSSE
T ss_pred CCeeechhhHHHHHhC-CCcEE-EEECCCCCcCcccccceeEcHHHHHhhhC--ccceEEECchhHHHHHHHhCCccCCe
Confidence 4677899999999853 44444 455555555555555 56666666766 56666666222222 6899999999
Q ss_pred EEEEeCCCCCc
Q 021368 236 ILFFPAGNKSF 246 (313)
Q Consensus 236 i~~~~~g~~~~ 246 (313)
+++|++|....
T Consensus 86 Lvf~R~g~~lG 96 (107)
T PF07449_consen 86 LVFFRDGRYLG 96 (107)
T ss_dssp EEEEETTEEEE
T ss_pred EEEEECCEEEE
Confidence 99999998764
No 321
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=95.25 E-value=0.091 Score=40.41 Aligned_cols=41 Identities=17% Similarity=0.149 Sum_probs=30.4
Q ss_pred CCccEEEEEe-eC-CchhhhhHHHHHHHHhccC-eEEEEEEeCC
Q 021368 49 PIKNQLLLFA-VS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMD 89 (313)
Q Consensus 49 ~~~~~v~f~~-~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~ 89 (313)
++..+|.||. .| +.|....+.+.++..++.+ .+.++.|..+
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d 66 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPD 66 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4466777774 66 8899999999999998874 3666666543
No 322
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=95.23 E-value=0.043 Score=39.67 Aligned_cols=53 Identities=13% Similarity=0.221 Sum_probs=35.4
Q ss_pred CCcEEEEEeC----CCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------ccCCCCcCceEEE
Q 021368 178 SKDVLLEIYA----PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPTILF 238 (313)
Q Consensus 178 ~k~~lv~fy~----~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------~~~~v~~~P~i~~ 238 (313)
..+++|+-.+ +||++|..+...|... ++.+..+|+..+.. ..-+-.++|.+++
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~--------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC--------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHc--------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 4556665442 8999999998888775 34566677765543 1234568898865
No 323
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=95.21 E-value=0.16 Score=41.52 Aligned_cols=92 Identities=10% Similarity=-0.027 Sum_probs=59.2
Q ss_pred CCccEEEEE-eeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCc----------------------ccccchhhhhCC
Q 021368 49 PIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNE----------------------DVGKPVSEYFGI 103 (313)
Q Consensus 49 ~~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~----------------------~~~~~l~~~~~v 103 (313)
++..+|.|| +.| +.|....+.|.++..+|.+ .+.++.|.++.. +....+++.||+
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv 110 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGV 110 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhCC
Confidence 445667788 888 9999999999999999864 355555554421 013467788898
Q ss_pred CC----CCCcEEEEEcCCCCceecc----CCCCCHHHHHHHHHHH
Q 021368 104 TG----EAPKVLAYTGNDDAKKHIL----DGELTLDKIKTFGEDF 140 (313)
Q Consensus 104 ~~----~~~P~i~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~ 140 (313)
.. ...|+.++++.++...+.+ ...+..+++.+.|+..
T Consensus 111 ~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~ 155 (187)
T TIGR03137 111 LIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAA 155 (187)
T ss_pred cccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 62 1247777776655333332 1235788888777543
No 324
>PHA03050 glutaredoxin; Provisional
Probab=95.20 E-value=0.04 Score=40.70 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=34.4
Q ss_pred EEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc---------ccCCCCcCceEEE
Q 021368 181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---------HRAKSDGFPTILF 238 (313)
Q Consensus 181 ~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~---------~~~~v~~~P~i~~ 238 (313)
-++.|..+||++|......|.+..-.. -.+..+|++.... +.-+-.++|.+++
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~~~i~~-----~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI 75 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNKFSFKR-----GAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF 75 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCc-----CCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE
Confidence 477899999999999988887763211 1344445554211 2235678999966
No 325
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=95.19 E-value=0.047 Score=42.31 Aligned_cols=57 Identities=11% Similarity=0.044 Sum_probs=42.0
Q ss_pred CCccEEEEEeeC--CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCC
Q 021368 49 PIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE 106 (313)
Q Consensus 49 ~~~~~v~f~~~~--~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~ 106 (313)
++..++.||..| +.|....+.|.++..++.+ +.|+.|+.+.......+.+.+++..+
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~-~~vi~Is~d~~~~~~~~~~~~~~~~~ 84 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLDN-TVVLTISADLPFAQKRWCGAEGVDNV 84 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCC-CEEEEEECCCHHHHHHHHHhcCCCCc
Confidence 456777899988 7899999999999999976 78888888653213445555555433
No 326
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=95.04 E-value=0.053 Score=38.54 Aligned_cols=56 Identities=21% Similarity=0.402 Sum_probs=36.2
Q ss_pred CCcEEEEEeC----CCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------ccCCCCcCceEEEEeCCC
Q 021368 178 SKDVLLEIYA----PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPTILFFPAGN 243 (313)
Q Consensus 178 ~k~~lv~fy~----~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------~~~~v~~~P~i~~~~~g~ 243 (313)
+++++|+-.+ +||+.|......+... ++.+..+|+..+.. ..-+-.++|.+++ +|.
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~--------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi--~g~ 72 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL--------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV--NGE 72 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc--------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE--CCE
Confidence 4566665443 7999999998888776 34556666655433 1235678899854 444
No 327
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=94.70 E-value=0.075 Score=42.59 Aligned_cols=55 Identities=13% Similarity=0.139 Sum_probs=42.6
Q ss_pred CCccEEEEEeeC--CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCC
Q 021368 49 PIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGIT 104 (313)
Q Consensus 49 ~~~~~v~f~~~~--~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~ 104 (313)
++..+|.||..| +.|....+.|.+++.++.+ +.++.|.++....+..+++.+|+.
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~-~~vv~vs~D~~~~~~~f~~~~~~~ 100 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELDN-TVVLCISADLPFAQKRFCGAEGLE 100 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCC-cEEEEEeCCCHHHHHHHHHhCCCC
Confidence 446778899999 7899999999999999964 778888777532255677777764
No 328
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=94.69 E-value=0.15 Score=39.62 Aligned_cols=54 Identities=6% Similarity=0.006 Sum_probs=38.0
Q ss_pred CccEEEEE-eeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcccccchhhhhCC
Q 021368 50 IKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGI 103 (313)
Q Consensus 50 ~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~~~~~l~~~~~v 103 (313)
...+|+|| ..| +.|+...+.+.++..++.+ .+.++.|..+.......+++..++
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~ 80 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFL 80 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCC
Confidence 35556665 788 9999999999999999964 388888887764312223444444
No 329
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=94.67 E-value=0.027 Score=41.10 Aligned_cols=94 Identities=17% Similarity=0.245 Sum_probs=52.1
Q ss_pred CCcccccccCCCccEEEEEeeCCchh---hhhHHHHHHHHhccCeEEEEEEeCCCccc-ccchhhhhCCCCCCCcEEEEE
Q 021368 39 RENAPSVFESPIKNQLLLFAVSNDSE---KLLPVFEEAAKSFKGKLIFVYVQMDNEDV-GKPVSEYFGITGEAPKVLAYT 114 (313)
Q Consensus 39 ~~~~~~~~~~~~~~~v~f~~~~~~c~---~~~~~~~~~a~~~~~~v~f~~vd~~~~~~-~~~l~~~~~v~~~~~P~i~~~ 114 (313)
.+.++.+...+....+++|.-...|. .....|++......+.+.++++|.-+..+ ...++.+|||.-- .|.++++
T Consensus 7 ~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~He-SPQ~ili 85 (105)
T PF11009_consen 7 EEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHE-SPQVILI 85 (105)
T ss_dssp HHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT-----SSEEEEE
T ss_pred HHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcC-CCcEEEE
Confidence 34566666665566777777665664 55556666666666669999999877532 4567799999866 7888888
Q ss_pred cCCCCceeccCCCCCHHHH
Q 021368 115 GNDDAKKHILDGELTLDKI 133 (313)
Q Consensus 115 ~~~~~~~~~~~g~~~~~~i 133 (313)
++|+.....-...++.+.|
T Consensus 86 ~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 86 KNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp ETTEEEEEEEGGG-SHHHH
T ss_pred ECCEEEEECccccCCHHhc
Confidence 8876332222335666655
No 330
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=94.65 E-value=0.074 Score=45.76 Aligned_cols=90 Identities=9% Similarity=0.038 Sum_probs=58.7
Q ss_pred CCCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc------------------------------c
Q 021368 177 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE------------------------------H 225 (313)
Q Consensus 177 ~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~------------------------------~ 225 (313)
.++.++++|| +.||+.|....+.|.++..+|+.. ++.+..+.++... .
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~-gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~ia 175 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER-GVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVS 175 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHH
Confidence 3567777777 899999999999999999998754 3555555554410 0
Q ss_pred ccCCCC-----cCceEEEEeCCCCCcCceeec--cCcCHHHHHHHHHhc
Q 021368 226 HRAKSD-----GFPTILFFPAGNKSFDPINVD--VDRTVVALYKFLKKN 267 (313)
Q Consensus 226 ~~~~v~-----~~P~i~~~~~g~~~~~~~~y~--g~~~~~~l~~fi~~~ 267 (313)
..|++. ..|+.++......+.....+. ...+.+++++-|...
T Consensus 176 kayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 176 KSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 234543 479989986444331222232 256889999888655
No 331
>PRK13191 putative peroxiredoxin; Provisional
Probab=94.60 E-value=0.066 Score=44.85 Aligned_cols=89 Identities=6% Similarity=0.058 Sum_probs=58.6
Q ss_pred CCcEE-EEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-----------------------------cc
Q 021368 178 SKDVL-LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------------HR 227 (313)
Q Consensus 178 ~k~~l-v~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----------------------------~~ 227 (313)
++.++ ++|++.||+.|....+.|.++...|+.. ++.+..+.++.... ..
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~-g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL-NTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 45544 4788999999999999999999999754 45666666554321 12
Q ss_pred CCCC-------cCceEEEEeCCCCCcCceeec--cCcCHHHHHHHHHhc
Q 021368 228 AKSD-------GFPTILFFPAGNKSFDPINVD--VDRTVVALYKFLKKN 267 (313)
Q Consensus 228 ~~v~-------~~P~i~~~~~g~~~~~~~~y~--g~~~~~~l~~fi~~~ 267 (313)
|++. ..|+.+++.....+.....|. -.++.+++++.|...
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 2331 368888886544441111222 246899999999765
No 332
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=94.59 E-value=0.059 Score=44.70 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=33.3
Q ss_pred cEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368 180 DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 222 (313)
Q Consensus 180 ~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~ 222 (313)
.+++.|++.||+.|....+.+.++...|++. ++.+..+.++.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~-gv~vigvS~D~ 69 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKR-NVKLIGLSVDS 69 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEECCC
Confidence 4556889999999999999999999999754 46666666554
No 333
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=94.58 E-value=0.11 Score=36.59 Aligned_cols=36 Identities=28% Similarity=0.573 Sum_probs=27.0
Q ss_pred EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEe
Q 021368 182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 219 (313)
Q Consensus 182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd 219 (313)
+.+|+++.|++|..+.+.+.++...... ++.+....
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~~~ 36 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG--GVRVVYRP 36 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC--cEEEEEec
Confidence 4689999999999999999999855444 44444443
No 334
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=94.54 E-value=0.096 Score=42.82 Aligned_cols=101 Identities=11% Similarity=0.135 Sum_probs=71.1
Q ss_pred ceEEeCC-CcccccccCC---CccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCC
Q 021368 33 LVTIFTR-ENAPSVFESP---IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA 107 (313)
Q Consensus 33 ~v~~lt~-~~~~~~~~~~---~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~ 107 (313)
.|.+++. +.|-+.+... ...+|.+|-+. ..|..+...+.=||.++.- ++|..+..+. ....++|.....
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~-vKFckikss~----~gas~~F~~n~l- 212 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI-VKFCKIKSSN----TGASDRFSLNVL- 212 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc-eeEEEeeecc----ccchhhhcccCC-
Confidence 6777765 3344444332 23345689998 9999999999999999998 9999998874 466788988888
Q ss_pred CcEEEEEcCCCCc--eec----cCCCCCHHHHHHHHHHH
Q 021368 108 PKVLAYTGNDDAK--KHI----LDGELTLDKIKTFGEDF 140 (313)
Q Consensus 108 ~P~i~~~~~~~~~--~~~----~~g~~~~~~i~~fi~~~ 140 (313)
|+++||.+|... ... +..+.....+..|+.++
T Consensus 213 -P~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 213 -PTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred -ceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 999999988621 111 12234555666666664
No 335
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=94.51 E-value=0.3 Score=39.96 Aligned_cols=92 Identities=9% Similarity=-0.068 Sum_probs=61.4
Q ss_pred CCccEEEEE-eeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcc----------------------cccchhhhhCC
Q 021368 49 PIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED----------------------VGKPVSEYFGI 103 (313)
Q Consensus 49 ~~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~----------------------~~~~l~~~~~v 103 (313)
++..++.|| +.| +.|....+.|.++..+|.+ .+.++.|..+... .+..+++.||+
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv 110 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN 110 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCC
Confidence 345566677 788 9999999999999999964 2555555544311 13477788888
Q ss_pred C----CCCCcEEEEEcCCCCceecc----CCCCCHHHHHHHHHHH
Q 021368 104 T----GEAPKVLAYTGNDDAKKHIL----DGELTLDKIKTFGEDF 140 (313)
Q Consensus 104 ~----~~~~P~i~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~ 140 (313)
. +...|+.++++.++...+.+ ...++.+++.+.+..+
T Consensus 111 ~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 111 MREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred CcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 4 22237777887665333332 3347899999888665
No 336
>PRK13599 putative peroxiredoxin; Provisional
Probab=94.43 E-value=0.084 Score=44.21 Aligned_cols=89 Identities=11% Similarity=0.068 Sum_probs=59.3
Q ss_pred CCc-EEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-----------------------------cc
Q 021368 178 SKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------------HR 227 (313)
Q Consensus 178 ~k~-~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----------------------------~~ 227 (313)
++. +|+.|++.||+.|...++.|.++..+|+.. ++.+..+.++.... ..
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~-gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL-NTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 454 467889999999999999999999999754 45555565554210 22
Q ss_pred CCC-------CcCceEEEEeCCCCCcCceeecc--CcCHHHHHHHHHhc
Q 021368 228 AKS-------DGFPTILFFPAGNKSFDPINVDV--DRTVVALYKFLKKN 267 (313)
Q Consensus 228 ~~v-------~~~P~i~~~~~g~~~~~~~~y~g--~~~~~~l~~fi~~~ 267 (313)
|++ ...|+++++.....+.....|.. .++.+++++.|...
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 344 25799999965444412222322 46789999999764
No 337
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.41 E-value=0.2 Score=47.87 Aligned_cols=122 Identities=9% Similarity=0.014 Sum_probs=86.8
Q ss_pred cccccCCCCCCHHHHHHHHHhc--CCCceEEeCCCcccccccCCCcc-EEEEEeeC-CchhhhhHHHHHHHHhccCeEEE
Q 021368 8 KISYFADGKFDKSTIADFVFSN--KLPLVTIFTRENAPSVFESPIKN-QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIF 83 (313)
Q Consensus 8 ~~~~y~~g~~~~~~l~~fi~~~--~~~~v~~lt~~~~~~~~~~~~~~-~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f 83 (313)
..+.| +|==.=+++..||..- ....-..|+++..+.+-.-..+. +-+|+++. +.|......+.+++..... |..
T Consensus 74 ~~i~f-~g~P~g~Ef~s~i~~i~~~~~~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~-i~~ 151 (515)
T TIGR03140 74 TGIRF-AGIPGGHEFTSLVLAILQVGGHGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPN-ISH 151 (515)
T ss_pred cceEE-EecCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCC-ceE
Confidence 45788 7765566677776532 22234566666655554333344 55677888 9999999999999999885 888
Q ss_pred EEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHh
Q 021368 84 VYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL 141 (313)
Q Consensus 84 ~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~ 141 (313)
-.+|... ++++.++|++... |++++ ++. ..+.|..+.+.+.+.+....
T Consensus 152 ~~id~~~---~~~~~~~~~v~~V--P~~~i-~~~----~~~~g~~~~~~~~~~l~~~~ 199 (515)
T TIGR03140 152 TMIDGAL---FQDEVEALGIQGV--PAVFL-NGE----EFHNGRMDLAELLEKLEETA 199 (515)
T ss_pred EEEEchh---CHHHHHhcCCccc--CEEEE-CCc----EEEecCCCHHHHHHHHhhcc
Confidence 8899988 6799999999988 99955 322 34678888888877776553
No 338
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=94.40 E-value=0.057 Score=41.28 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=38.7
Q ss_pred ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhh---hCCCCCCCcEEEEEcCC
Q 021368 51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEY---FGITGEAPKVLAYTGND 117 (313)
Q Consensus 51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~---~~v~~~~~P~i~~~~~~ 117 (313)
..+++|..+| ++|....|.+.++|+...+ +.+-.+--++ +.++.++ .|.+.. |++++++.+
T Consensus 43 ~~ilvi~e~WCgD~~~~vP~l~kiae~~p~-i~~~~i~rd~---~~el~~~~lt~g~~~I--P~~I~~d~~ 107 (129)
T PF14595_consen 43 YNILVITETWCGDCARNVPVLAKIAEANPN-IEVRIILRDE---NKELMDQYLTNGGRSI--PTFIFLDKD 107 (129)
T ss_dssp EEEEEE--TT-HHHHHHHHHHHHHHHH-TT-EEEEEE-HHH---HHHHTTTTTT-SS--S--SEEEEE-TT
T ss_pred cEEEEEECCCchhHHHHHHHHHHHHHhCCC-CeEEEEEecC---ChhHHHHHHhCCCeec--CEEEEEcCC
Confidence 4566788899 9999999999999998765 4444443333 4455544 466666 999999765
No 339
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=94.16 E-value=0.36 Score=35.55 Aligned_cols=94 Identities=13% Similarity=0.132 Sum_probs=57.0
Q ss_pred CcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceEEEEeCCC---
Q 021368 167 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGN--- 243 (313)
Q Consensus 167 ~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i~~~~~g~--- 243 (313)
.+.+.+++....+.++|-|+...-+ .....|.++|..++. .+.|+.... ......+++. .|.+++|+...
T Consensus 8 ~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rd--d~~F~~t~~-~~~~~~~~~~-~~~vvl~rp~~~~~ 80 (107)
T cd03068 8 LKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLRE--DYKFHHTFD-SEIFKSLKVS-PGQLVVFQPEKFQS 80 (107)
T ss_pred HHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhccc--CCEEEEECh-HHHHHhcCCC-CCceEEECcHHHhh
Confidence 3456666644425566655554322 567789999999987 577765432 2222455654 57777774321
Q ss_pred -CCcCceeeccC-cCHHH-HHHHHHhc
Q 021368 244 -KSFDPINVDVD-RTVVA-LYKFLKKN 267 (313)
Q Consensus 244 -~~~~~~~y~g~-~~~~~-l~~fi~~~ 267 (313)
.-.....|.|. .+.+. |.+||++|
T Consensus 81 k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 81 KYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred hcCcceeeeeccccchHHHHHHHHhcC
Confidence 11234578887 67656 99999875
No 340
>PRK10638 glutaredoxin 3; Provisional
Probab=94.15 E-value=0.087 Score=36.73 Aligned_cols=49 Identities=12% Similarity=0.223 Sum_probs=34.6
Q ss_pred EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------ccCCCCcCceEEE
Q 021368 182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPTILF 238 (313)
Q Consensus 182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------~~~~v~~~P~i~~ 238 (313)
+++|..+||++|..+...+.+. ++.+..+|++.+.. +..+...+|++++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~--------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~ 58 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK--------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI 58 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 5678889999999998888764 35556677766542 1235568898855
No 341
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=94.15 E-value=0.38 Score=41.29 Aligned_cols=29 Identities=14% Similarity=0.333 Sum_probs=23.9
Q ss_pred CCCcEEEEEeCCCCccchhhhHHHHHHHH
Q 021368 177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAK 205 (313)
Q Consensus 177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~ 205 (313)
+.+.+++.|..+.|++|+.+...+..+..
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~ 144 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVD 144 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhh
Confidence 45678999999999999999888766543
No 342
>PRK13189 peroxiredoxin; Provisional
Probab=94.05 E-value=0.1 Score=44.01 Aligned_cols=89 Identities=12% Similarity=0.098 Sum_probs=57.6
Q ss_pred CCCc-EEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-----------------------------c
Q 021368 177 ESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------------H 226 (313)
Q Consensus 177 ~~k~-~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----------------------------~ 226 (313)
.++. +|++|++.||+.|....+.|.++..+|+.. ++.+..+.++.... .
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~-~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~ 112 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL-NTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAK 112 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHH
Confidence 3554 455778999999999999999999998753 45555555443110 2
Q ss_pred cCCCC-------cCceEEEEeCCCCCcCceee-c--cCcCHHHHHHHHHhc
Q 021368 227 RAKSD-------GFPTILFFPAGNKSFDPINV-D--VDRTVVALYKFLKKN 267 (313)
Q Consensus 227 ~~~v~-------~~P~i~~~~~g~~~~~~~~y-~--g~~~~~~l~~fi~~~ 267 (313)
.|++. ..|+.++......+ +.+.+ . ..++.+++++.|...
T Consensus 113 ~ygv~~~~~~~~~~r~tfIID~~G~I-r~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 113 KLGMISPGKGTNTVRAVFIIDPKGII-RAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred HhCCCccccCCCceeEEEEECCCCeE-EEEEecCCCCCCCHHHHHHHHHHh
Confidence 33432 46888888644444 22222 2 356788999999765
No 343
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=94.00 E-value=0.12 Score=40.19 Aligned_cols=32 Identities=25% Similarity=0.519 Sum_probs=27.3
Q ss_pred CCCcEEEEEeCCCCccchhhhHHHHHHHHHhc
Q 021368 177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLR 208 (313)
Q Consensus 177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~ 208 (313)
+.+.+++.|+.++|++|..+.+.+..+...+.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~ 35 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP 35 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC
Confidence 35778999999999999999999998876653
No 344
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=93.98 E-value=0.031 Score=48.36 Aligned_cols=85 Identities=15% Similarity=0.307 Sum_probs=65.9
Q ss_pred CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc---ccCCCCcCceEEEEeCCCCCcCceeeccC
Q 021368 178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---HRAKSDGFPTILFFPAGNKSFDPINVDVD 254 (313)
Q Consensus 178 ~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~---~~~~v~~~P~i~~~~~g~~~~~~~~y~g~ 254 (313)
..++-+.||++||+..+...+.+.-.+..|....+.. ++-..... .++++.+.|++.+....-.. +|-|.
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~---vee~~~lpsv~s~~~~~~~ps~~~~n~t~~~----~~~~~ 148 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFA---VEESQALPSVFSSYGIHSEPSNLMLNQTCPA----SYRGE 148 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhcccccccc---HHHHhhcccchhccccccCCcceeeccccch----hhccc
Confidence 4578899999999999999999999998887532222 32222222 68899999999997655443 89999
Q ss_pred cCHHHHHHHHHhcCC
Q 021368 255 RTVVALYKFLKKNAS 269 (313)
Q Consensus 255 ~~~~~l~~fi~~~~~ 269 (313)
.+..+|..|..+.++
T Consensus 149 r~l~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 149 RDLASLVNFYTEITP 163 (319)
T ss_pred ccHHHHHHHHHhhcc
Confidence 999999999999886
No 345
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=93.87 E-value=0.13 Score=42.45 Aligned_cols=90 Identities=11% Similarity=0.084 Sum_probs=57.7
Q ss_pred CCcEEEEEeC-CCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------------------------------c
Q 021368 178 SKDVLLEIYA-PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------------------------------H 226 (313)
Q Consensus 178 ~k~~lv~fy~-~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------------------------------~ 226 (313)
++.++|+||. .||..|......+.++..+|+.. ++.+..++++.... .
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~-g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL-NCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 5788889995 78999988888999999998764 56666666553221 1
Q ss_pred cCCCC------cCceEEEEeCCCCCcCceee--ccCcCHHHHHHHHHhcC
Q 021368 227 RAKSD------GFPTILFFPAGNKSFDPINV--DVDRTVVALYKFLKKNA 268 (313)
Q Consensus 227 ~~~v~------~~P~i~~~~~g~~~~~~~~y--~g~~~~~~l~~fi~~~~ 268 (313)
.|++. .+|+.+++.....+.....+ .-.++.+++++.|...-
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~~ 164 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQ 164 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhhh
Confidence 23443 35788888644433111111 12457788888886553
No 346
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=93.86 E-value=0.46 Score=39.92 Aligned_cols=53 Identities=15% Similarity=0.209 Sum_probs=43.1
Q ss_pred CCCCeEEEcCcChHHHh--hcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCC
Q 021368 158 NDGDVKIVVGNNFDEIV--LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV 210 (313)
Q Consensus 158 ~~~~v~~l~~~~f~~~l--~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~ 210 (313)
++..|..+++.....++ ...++|.+|.|.+-.|++-..-...|++++++|.+.
T Consensus 80 Pns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~ 134 (237)
T PF00837_consen 80 PNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV 134 (237)
T ss_pred CCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh
Confidence 45778888887743333 256899999999999999999999999999999874
No 347
>PRK10824 glutaredoxin-4; Provisional
Probab=93.82 E-value=0.12 Score=38.57 Aligned_cols=58 Identities=21% Similarity=0.257 Sum_probs=34.9
Q ss_pred CCcEEEEEeC----CCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--c----cCCCCcCceEEEEeCCCCC
Q 021368 178 SKDVLLEIYA----PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKSDGFPTILFFPAGNKS 245 (313)
Q Consensus 178 ~k~~lv~fy~----~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~----~~~v~~~P~i~~~~~g~~~ 245 (313)
..+++|+--+ |||++|......|..+. +.+..+|+..+.. . .-+-..+|.|++ +|..+
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~--------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI--~G~~I 81 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACG--------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV--DGELV 81 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcC--------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 4556665443 69999999998888763 2333345554432 1 124567788777 55543
No 348
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=0.13 Score=35.68 Aligned_cols=49 Identities=16% Similarity=0.324 Sum_probs=35.5
Q ss_pred EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc--c-----ccC-CCCcCceEEE
Q 021368 182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--H-----HRA-KSDGFPTILF 238 (313)
Q Consensus 182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~--~-----~~~-~v~~~P~i~~ 238 (313)
++.|..++|++|......+.+. ++.+..++++... . ... +..++|.|++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~--------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK--------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc--------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 5678889999999998887743 4566666666655 2 233 6789999888
No 349
>PRK15000 peroxidase; Provisional
Probab=93.75 E-value=0.44 Score=39.42 Aligned_cols=92 Identities=15% Similarity=0.178 Sum_probs=60.1
Q ss_pred CCccEEEEEee-C-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcc-------------------------cccchhhh
Q 021368 49 PIKNQLLLFAV-S-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED-------------------------VGKPVSEY 100 (313)
Q Consensus 49 ~~~~~v~f~~~-~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~-------------------------~~~~l~~~ 100 (313)
++..++.||.. | +.|....+.|.+++.+|.. .+.++.|.++... ....+++.
T Consensus 34 gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ 113 (200)
T PRK15000 34 GKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKA 113 (200)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHHH
Confidence 44556667774 5 8999999999999999985 3666666665321 12356667
Q ss_pred hCCCC----CCCcEEEEEcCCCCceecc----CCCCCHHHHHHHHHHH
Q 021368 101 FGITG----EAPKVLAYTGNDDAKKHIL----DGELTLDKIKTFGEDF 140 (313)
Q Consensus 101 ~~v~~----~~~P~i~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~ 140 (313)
||+.. ...|+.++++.++...+.+ ...++.+++.+.+..+
T Consensus 114 ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 114 YGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred cCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 88761 1237777777655333332 2347888888888664
No 350
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=93.73 E-value=0.52 Score=36.93 Aligned_cols=43 Identities=5% Similarity=0.090 Sum_probs=32.0
Q ss_pred CCCccEEEEEeeC--CchhhhhHHHHHHHHhccC-eEEEEEEeCCC
Q 021368 48 SPIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDN 90 (313)
Q Consensus 48 ~~~~~~v~f~~~~--~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~ 90 (313)
.++..+|.||..| +.|....+.+.++..++.+ .+.|+.|..+.
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~ 74 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDK 74 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3446777788765 7799999999999999875 36677776543
No 351
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=93.71 E-value=0.66 Score=35.10 Aligned_cols=88 Identities=8% Similarity=0.090 Sum_probs=61.9
Q ss_pred ccEEE-EEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCC--------c
Q 021368 51 KNQLL-LFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDA--------K 120 (313)
Q Consensus 51 ~~~v~-f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~--------~ 120 (313)
..+|+ |=.+| +.|-++-..+.++|.+.+.-..++.||.++ -+.+.+-|.+. .|-+++||-.++. .
T Consensus 21 rvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~---Vpdfn~~yel~--dP~tvmFF~rnkhm~vD~Gtgn 95 (133)
T PF02966_consen 21 RVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDE---VPDFNQMYELY--DPCTVMFFFRNKHMMVDFGTGN 95 (133)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTT---THCCHHHTTS---SSEEEEEEETTEEEEEESSSSS
T ss_pred eEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEccc---chhhhcccccC--CCeEEEEEecCeEEEEEecCCC
Confidence 34444 55566 899999999999999999999999999998 67899999997 4567777733332 2
Q ss_pred eeccCCC-CCHHHHHHHHHHHhcC
Q 021368 121 KHILDGE-LTLDKIKTFGEDFLEG 143 (313)
Q Consensus 121 ~~~~~g~-~~~~~i~~fi~~~~~~ 143 (313)
..++.+. .+.+++..-++....|
T Consensus 96 nnKin~~~~~kqe~iDiie~iyrg 119 (133)
T PF02966_consen 96 NNKINWAFEDKQEFIDIIETIYRG 119 (133)
T ss_dssp SSSBCS--SCHHHHHHHHHHHHHH
T ss_pred ccEEEEEcCcHHHHHHHHHHHHHH
Confidence 2233333 3577887777766543
No 352
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=93.58 E-value=0.14 Score=35.57 Aligned_cols=77 Identities=19% Similarity=0.297 Sum_probs=53.2
Q ss_pred EEEEeeC--CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCC-CceeccCCCCCH
Q 021368 54 LLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDD-AKKHILDGELTL 130 (313)
Q Consensus 54 v~f~~~~--~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~-~~~~~~~g~~~~ 130 (313)
|.||+.. +-|..+...+.+++.... +.+-.||.++ ++.+..+||. .. |.+.+-+..+ .......+..+.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~--~~l~~vDI~~---d~~l~~~Y~~-~I--PVl~~~~~~~~~~~~~~~~~~d~ 73 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP--FELEEVDIDE---DPELFEKYGY-RI--PVLHIDGIRQFKEQEELKWRFDE 73 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST--CEEEEEETTT---THHHHHHSCT-ST--SEEEETT-GGGCTSEEEESSB-H
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC--ceEEEEECCC---CHHHHHHhcC-CC--CEEEEcCcccccccceeCCCCCH
Confidence 3455544 789999999998766655 8888999987 5689999997 45 9986644211 112334667899
Q ss_pred HHHHHHHH
Q 021368 131 DKIKTFGE 138 (313)
Q Consensus 131 ~~i~~fi~ 138 (313)
+.|.+|+.
T Consensus 74 ~~L~~~L~ 81 (81)
T PF05768_consen 74 EQLRAWLE 81 (81)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99998874
No 353
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=93.46 E-value=0.16 Score=37.10 Aligned_cols=77 Identities=14% Similarity=0.180 Sum_probs=52.5
Q ss_pred CcChHHHhhc-CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------ccCCCCcC-ceEEE
Q 021368 167 GNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGF-PTILF 238 (313)
Q Consensus 167 ~~~f~~~l~~-~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------~~~~v~~~-P~i~~ 238 (313)
.+.+++++.. ..++++|+=.++.|+-.......|++......+ .+.++.+|+-.... ..++|..- |.+++
T Consensus 7 ~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~--~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~il 84 (105)
T PF11009_consen 7 EEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPD--EIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVIL 84 (105)
T ss_dssp HHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT------EEEEEGGGGHHHHHHHHHHHT----SSEEEE
T ss_pred HHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc--cceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEE
Confidence 3566676643 367888888999999998888888888887765 48888899887654 57888754 99999
Q ss_pred EeCCCCC
Q 021368 239 FPAGNKS 245 (313)
Q Consensus 239 ~~~g~~~ 245 (313)
+++|..+
T Consensus 85 i~~g~~v 91 (105)
T PF11009_consen 85 IKNGKVV 91 (105)
T ss_dssp EETTEEE
T ss_pred EECCEEE
Confidence 9999874
No 354
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=93.29 E-value=0.51 Score=36.60 Aligned_cols=41 Identities=15% Similarity=0.151 Sum_probs=32.1
Q ss_pred CccEEEEE-eeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCC
Q 021368 50 IKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDN 90 (313)
Q Consensus 50 ~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~ 90 (313)
...+|.|| +.| +.|....+.+.++..++.+ .+.++.|..+.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~ 72 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDS 72 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCC
Confidence 45566677 788 9999999999999999974 47777776544
No 355
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=93.23 E-value=0.25 Score=34.55 Aligned_cols=77 Identities=8% Similarity=0.106 Sum_probs=51.7
Q ss_pred EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCccc-ccchhhhhC--CCCCCCcEEEEEcCCCCceeccCCCC
Q 021368 53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDV-GKPVSEYFG--ITGEAPKVLAYTGNDDAKKHILDGEL 128 (313)
Q Consensus 53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~-~~~l~~~~~--v~~~~~P~i~~~~~~~~~~~~~~g~~ 128 (313)
+++|..+| +.|.++...|++++.++.+ +.+..+|.+.... ..++....| +..+ |+++ +++. .+ -
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~-i~~~~idi~~~~~~~~el~~~~~~~~~~v--P~if-i~g~---~i-----g 70 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERDD-FDYRYVDIHAEGISKADLEKTVGKPVETV--PQIF-VDQK---HI-----G 70 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccccC-CcEEEEECCCChHHHHHHHHHHCCCCCcC--CEEE-ECCE---EE-----c
Confidence 55677788 9999999999999988766 8888888876310 123444444 3556 9984 4321 11 2
Q ss_pred CHHHHHHHHHHHh
Q 021368 129 TLDKIKTFGEDFL 141 (313)
Q Consensus 129 ~~~~i~~fi~~~~ 141 (313)
..++|.+++++.+
T Consensus 71 g~~~~~~~~~~~~ 83 (85)
T PRK11200 71 GCTDFEAYVKENL 83 (85)
T ss_pred CHHHHHHHHHHhc
Confidence 4577777777654
No 356
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=92.77 E-value=0.61 Score=34.29 Aligned_cols=89 Identities=15% Similarity=0.211 Sum_probs=56.3
Q ss_pred CcccccccCC-CccEEEEEeeCCchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCC
Q 021368 40 ENAPSVFESP-IKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDD 118 (313)
Q Consensus 40 ~~~~~~~~~~-~~~~v~f~~~~~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~ 118 (313)
+.++.+.... ...+|-||..... .....|.++|..+.....|+..... .+...+++.. |.++++++..
T Consensus 9 ~ele~f~~~~~~~~VVG~F~~~~~--~~~~~F~~vA~~~Rdd~~F~~t~~~------~~~~~~~~~~---~~vvl~rp~~ 77 (107)
T cd03068 9 KQVQEFLRDGDDVIIIGVFSGEED--PAYQLYQDAANSLREDYKFHHTFDS------EIFKSLKVSP---GQLVVFQPEK 77 (107)
T ss_pred HHHHHHHhcCCCEEEEEEECCCCC--HHHHHHHHHHHhcccCCEEEEEChH------HHHHhcCCCC---CceEEECcHH
Confidence 3355555554 4556667766421 4667788999999887888775542 5667788752 4455664322
Q ss_pred ------CceeccCCC-CCHHH-HHHHHHH
Q 021368 119 ------AKKHILDGE-LTLDK-IKTFGED 139 (313)
Q Consensus 119 ------~~~~~~~g~-~~~~~-i~~fi~~ 139 (313)
.....|.|. .+.++ |.+|+.+
T Consensus 78 ~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 78 FQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred HhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 223446776 56666 9999875
No 357
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=92.71 E-value=2.7 Score=30.58 Aligned_cols=103 Identities=14% Similarity=0.053 Sum_probs=75.0
Q ss_pred EEEcCcChHHHhhcC-CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------ccCCCC-cCc
Q 021368 163 KIVVGNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSD-GFP 234 (313)
Q Consensus 163 ~~l~~~~f~~~l~~~-~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------~~~~v~-~~P 234 (313)
+.++.+++.+...+. ....++.|--+--+.-.++.++++++|+....++++.|+-||-+..+. +.|+|. .-|
T Consensus 4 rkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~P 83 (120)
T cd03074 4 RKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRP 83 (120)
T ss_pred hhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCC
Confidence 456667777766433 355677777777777889999999999999988899999999998875 345553 349
Q ss_pred eEEEEeCCCCCcCceeec--cC---cCHHHHHHHHHhc
Q 021368 235 TILFFPAGNKSFDPINVD--VD---RTVVALYKFLKKN 267 (313)
Q Consensus 235 ~i~~~~~g~~~~~~~~y~--g~---~~~~~l~~fi~~~ 267 (313)
.+-+..-... ..+-|. +. .+++.|..||...
T Consensus 84 qIGVV~vtda--dSvW~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 84 QIGVVNVTDA--DSVWMEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred ceeeEecccc--cceeEecccccccCcHHHHHHHHHhh
Confidence 9888765444 233333 33 5789999999764
No 358
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=92.43 E-value=0.39 Score=37.76 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=35.2
Q ss_pred CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeC
Q 021368 177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 220 (313)
Q Consensus 177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~ 220 (313)
+.+.+++.|+...|++|..+.+.+.++...+-+...+.+...+.
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 45778999999999999999999999998883333677777765
No 359
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=92.22 E-value=0.28 Score=39.36 Aligned_cols=42 Identities=26% Similarity=0.492 Sum_probs=34.2
Q ss_pred CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeC
Q 021368 177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 220 (313)
Q Consensus 177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~ 220 (313)
+.+..++.|+...|++|..+.+.+..+..++.+ .+.+..+..
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~--~v~~~~~~~ 55 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK--DVKFEKVPV 55 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC--CceEEEcCC
Confidence 568899999999999999999999999888754 455554443
No 360
>PRK13190 putative peroxiredoxin; Provisional
Probab=92.06 E-value=0.89 Score=37.63 Aligned_cols=87 Identities=11% Similarity=0.127 Sum_probs=58.8
Q ss_pred EEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCc------------------------ccccchhhhhCCCC----
Q 021368 56 LFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNE------------------------DVGKPVSEYFGITG---- 105 (313)
Q Consensus 56 f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~------------------------~~~~~l~~~~~v~~---- 105 (313)
|.+.| +.|....+.|.++..+|.. .+.++.|.++.. +....+++.||+..
T Consensus 35 ~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g 114 (202)
T PRK13190 35 HPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLIDENSG 114 (202)
T ss_pred EcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCccccCC
Confidence 56777 9999999999999999974 255666655421 01356777888841
Q ss_pred CCCcEEEEEcCCCCceec----cCCCCCHHHHHHHHHHHhc
Q 021368 106 EAPKVLAYTGNDDAKKHI----LDGELTLDKIKTFGEDFLE 142 (313)
Q Consensus 106 ~~~P~i~~~~~~~~~~~~----~~g~~~~~~i~~fi~~~~~ 142 (313)
...|+.++++.++...+. ..+.++.+++.+.+..+..
T Consensus 115 ~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~ 155 (202)
T PRK13190 115 ATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQV 155 (202)
T ss_pred cEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 123888888766533322 2456899999998887643
No 361
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=91.98 E-value=0.39 Score=36.93 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=35.0
Q ss_pred CCCccEEEEEeeC-Cc-hhhhhHHHHHHHHhccC----eEEEEEEeCCC
Q 021368 48 SPIKNQLLLFAVS-ND-SEKLLPVFEEAAKSFKG----KLIFVYVQMDN 90 (313)
Q Consensus 48 ~~~~~~v~f~~~~-~~-c~~~~~~~~~~a~~~~~----~v~f~~vd~~~ 90 (313)
.+...+|.|+..| +. |....+.+.++..++.+ ++.++.|.++.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 3456777899999 76 99999999999999976 38888887654
No 362
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=91.95 E-value=1.4 Score=38.01 Aligned_cols=90 Identities=18% Similarity=0.213 Sum_probs=59.9
Q ss_pred ccEEEEE-eeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCCc-----------------c--------cccchhhhhC
Q 021368 51 KNQLLLF-AVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNE-----------------D--------VGKPVSEYFG 102 (313)
Q Consensus 51 ~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~-----------------~--------~~~~l~~~~~ 102 (313)
..+++|| ..| +.|....+.|.++..+|.+. +.++.|.++.. . .+..+++.||
T Consensus 100 ~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayG 179 (261)
T PTZ00137 100 YGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFG 179 (261)
T ss_pred eEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHHcC
Confidence 4555566 677 99999999999999999742 55555555431 0 1356788899
Q ss_pred CCC---CCCcEEEEEcCCCCceec----cCCCCCHHHHHHHHHHH
Q 021368 103 ITG---EAPKVLAYTGNDDAKKHI----LDGELTLDKIKTFGEDF 140 (313)
Q Consensus 103 v~~---~~~P~i~~~~~~~~~~~~----~~g~~~~~~i~~fi~~~ 140 (313)
+.. ...|+.++++.++...+. ....++.+++.+.+..+
T Consensus 180 v~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 180 LLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred CCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 852 224888788765533332 24457888888888765
No 363
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=91.74 E-value=0.69 Score=39.22 Aligned_cols=40 Identities=18% Similarity=0.357 Sum_probs=31.7
Q ss_pred ccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021368 94 GKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF 140 (313)
Q Consensus 94 ~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~ 140 (313)
+..+++++||+++ |+++ +.+|. .+.|..+.+.|.+++.+.
T Consensus 191 ~~~la~~lgi~gT--Ptiv-~~~G~----~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 191 HYALGVQFGVQGT--PAIV-LSNGT----LVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred hHHHHHHcCCccc--cEEE-EcCCe----EeeCCCCHHHHHHHHHHc
Confidence 6788999999999 9996 44443 347889999999998763
No 364
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=91.52 E-value=3.4 Score=29.58 Aligned_cols=75 Identities=11% Similarity=0.068 Sum_probs=50.9
Q ss_pred CCcE-EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceEEEEeCCCCCcCceeeccCcC
Q 021368 178 SKDV-LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRT 256 (313)
Q Consensus 178 ~k~~-lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~ 256 (313)
.+++ ++.|.... ..|..+...++++|..- +++.+...+.. ...|++.+..+|.. ..++|.|-..
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS---dkI~~~~~~~~---------~~~P~~~i~~~~~~--~gIrF~GiP~ 82 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASLS---DKITLEEDNDD---------ERKPSFSINRPGED--TGIRFAGIPM 82 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHhC---CceEEEEecCC---------CCCCEEEEecCCCc--ccEEEEecCC
Confidence 4444 55565554 88988888888887653 24555433322 14799999877743 4679999888
Q ss_pred HHHHHHHHHhc
Q 021368 257 VVALYKFLKKN 267 (313)
Q Consensus 257 ~~~l~~fi~~~ 267 (313)
-+++..||...
T Consensus 83 GhEf~Slilai 93 (94)
T cd02974 83 GHEFTSLVLAL 93 (94)
T ss_pred chhHHHHHHHh
Confidence 88888888653
No 365
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=91.36 E-value=1.3 Score=36.61 Aligned_cols=86 Identities=16% Similarity=0.195 Sum_probs=57.0
Q ss_pred EEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcc------------------------cccchhhhhCCCC----
Q 021368 56 LFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED------------------------VGKPVSEYFGITG---- 105 (313)
Q Consensus 56 f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~------------------------~~~~l~~~~~v~~---- 105 (313)
|.++| +.|....+.|.+++.+|.+ .+.++.|.++... ....+++.||+..
T Consensus 33 ~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~~ 112 (203)
T cd03016 33 HPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMIDPDAG 112 (203)
T ss_pred ecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCccccCC
Confidence 55677 8999999999999999975 3667777665411 1346778888862
Q ss_pred C--CCcEEEEEcCCCCceecc----CCCCCHHHHHHHHHHHh
Q 021368 106 E--APKVLAYTGNDDAKKHIL----DGELTLDKIKTFGEDFL 141 (313)
Q Consensus 106 ~--~~P~i~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~~ 141 (313)
. ..|..++++.++...+.+ ...++.+++.+.+..+-
T Consensus 113 ~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq 154 (203)
T cd03016 113 STLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQ 154 (203)
T ss_pred CCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 2 123566776655333332 22467888988887653
No 366
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=91.21 E-value=0.7 Score=30.53 Aligned_cols=53 Identities=13% Similarity=0.166 Sum_probs=33.8
Q ss_pred EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccc-cchhhhhCCCCCCCcEEEE
Q 021368 53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVG-KPVSEYFGITGEAPKVLAY 113 (313)
Q Consensus 53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~-~~l~~~~~v~~~~~P~i~~ 113 (313)
+++|+++| +.|.++...+.+. + +.+..+|.+..... ..+.+..++..+ |++.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-----~-i~~~~~~i~~~~~~~~~~~~~~~~~~v--P~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-----G-IPFEEVDVDEDPEALEELKKLNGYRSV--PVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-----C-CCeEEEeCCCCHHHHHHHHHHcCCccc--CEEEE
Confidence 45677888 9999998888763 3 56667777652211 122233366667 99855
No 367
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=90.34 E-value=0.82 Score=33.39 Aligned_cols=56 Identities=11% Similarity=0.256 Sum_probs=37.0
Q ss_pred EEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--cc-----CCCCcCceEEEEeCCCC
Q 021368 181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HR-----AKSDGFPTILFFPAGNK 244 (313)
Q Consensus 181 ~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~-----~~v~~~P~i~~~~~g~~ 244 (313)
-+|.|..+||+.|..+..+|.. +.. ...+..+|-..+.. +. -+-.++|.+++ +|+.
T Consensus 15 ~VVifSKs~C~~c~~~k~ll~~----~~v--~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~ 77 (104)
T KOG1752|consen 15 PVVIFSKSSCPYCHRAKELLSD----LGV--NPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKF 77 (104)
T ss_pred CEEEEECCcCchHHHHHHHHHh----CCC--CCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEE
Confidence 4556889999999998888877 333 46777777664432 11 13348898877 4443
No 368
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=89.75 E-value=1.1 Score=36.57 Aligned_cols=59 Identities=10% Similarity=0.084 Sum_probs=42.8
Q ss_pred CCccEEEEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCc--------ccccchhh-hhCCCCCCCcEE
Q 021368 49 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNE--------DVGKPVSE-YFGITGEAPKVL 111 (313)
Q Consensus 49 ~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~--------~~~~~l~~-~~~v~~~~~P~i 111 (313)
++..+|.|++.| +.|.+ .+.|.++.++|.+ .+.+..+.|+.. .....+|+ .+|+. + |.+
T Consensus 25 GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~-F--pv~ 94 (183)
T PRK10606 25 GNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVT-F--PMF 94 (183)
T ss_pred CCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCCC-c--eeE
Confidence 457788899999 88864 8899999999985 388999988531 11345565 57763 4 755
No 369
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=89.74 E-value=1.7 Score=37.38 Aligned_cols=41 Identities=10% Similarity=0.156 Sum_probs=29.1
Q ss_pred cchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHH
Q 021368 95 KPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGE 138 (313)
Q Consensus 95 ~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~ 138 (313)
..+.+.+||+++ |++++-+++ +......|..+.+.|.+.+.
T Consensus 209 ~~l~~~lGv~GT--Paiv~~d~~-G~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 209 QKLMDDLGANAT--PAIYYMDKD-GTLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred HHHHHHcCCCCC--CEEEEECCC-CCEEEecCCCCHHHHHHHhC
Confidence 346678999999 999776543 33334578888888877653
No 370
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=89.48 E-value=1.5 Score=32.93 Aligned_cols=68 Identities=22% Similarity=0.185 Sum_probs=42.5
Q ss_pred CCCccEEEEEe-------eC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCccc----ccchhh--hhCCCCCCCcEEEE
Q 021368 48 SPIKNQLLLFA-------VS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDV----GKPVSE--YFGITGEAPKVLAY 113 (313)
Q Consensus 48 ~~~~~~v~f~~-------~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~----~~~l~~--~~~v~~~~~P~i~~ 113 (313)
.+.+.+|+|++ +| +.|....|.+.++-....+...|+.|...+... +..+-. .++|++. ||++-
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~I--PTLi~ 95 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGI--PTLIR 95 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SS--SEEEE
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeec--ceEEE
Confidence 34466667774 46 889999999999888877778888887644210 122333 5899988 99988
Q ss_pred EcCC
Q 021368 114 TGND 117 (313)
Q Consensus 114 ~~~~ 117 (313)
++++
T Consensus 96 ~~~~ 99 (119)
T PF06110_consen 96 WETG 99 (119)
T ss_dssp CTSS
T ss_pred ECCC
Confidence 8665
No 371
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=89.05 E-value=0.82 Score=34.95 Aligned_cols=54 Identities=17% Similarity=0.032 Sum_probs=37.8
Q ss_pred CCCccEEEEE-eeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcccccchhhhh
Q 021368 48 SPIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYF 101 (313)
Q Consensus 48 ~~~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~~~~~l~~~~ 101 (313)
.+...+|.|| +.| +.|....+.+.++..++.. .+.|+.|..+.......+++.+
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~ 77 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKE 77 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcc
Confidence 3456777777 567 8999999999999999853 4778888776532123444444
No 372
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=88.93 E-value=0.58 Score=43.30 Aligned_cols=49 Identities=10% Similarity=0.183 Sum_probs=35.9
Q ss_pred EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--c---c---------CCCCcCceEEE
Q 021368 182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H---R---------AKSDGFPTILF 238 (313)
Q Consensus 182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~---~---------~~v~~~P~i~~ 238 (313)
++.|..+||++|..+...+.+. ++.+..+|++.... . + .+..++|++++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~--------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN--------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 6789999999999998877775 46666777775542 1 1 25678899977
No 373
>PRK13189 peroxiredoxin; Provisional
Probab=88.84 E-value=2.5 Score=35.58 Aligned_cols=86 Identities=9% Similarity=0.083 Sum_probs=56.1
Q ss_pred EEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcc------------------------cccchhhhhCCCC----
Q 021368 56 LFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED------------------------VGKPVSEYFGITG---- 105 (313)
Q Consensus 56 f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~------------------------~~~~l~~~~~v~~---- 105 (313)
|.++| +.|....+.|.+++.+|.. .+.++.|.++... ....+++.||+..
T Consensus 43 ~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~ 122 (222)
T PRK13189 43 HPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKG 122 (222)
T ss_pred eCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCCccccC
Confidence 34677 8999999999999999974 2555555554311 1346678888762
Q ss_pred -CCCcEEEEEcCCCCceec----cCCCCCHHHHHHHHHHHh
Q 021368 106 -EAPKVLAYTGNDDAKKHI----LDGELTLDKIKTFGEDFL 141 (313)
Q Consensus 106 -~~~P~i~~~~~~~~~~~~----~~g~~~~~~i~~fi~~~~ 141 (313)
...|+.++++.++...+. ....++.+++.+.+..+.
T Consensus 123 ~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 163 (222)
T PRK13189 123 TNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQ 163 (222)
T ss_pred CCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 123777777766533222 234578888888887653
No 374
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.72 E-value=1.9 Score=32.08 Aligned_cols=67 Identities=24% Similarity=0.190 Sum_probs=47.1
Q ss_pred CCCccEEEEEe--------eC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCccc----ccchhhhhCC-CCCCCcEEEE
Q 021368 48 SPIKNQLLLFA--------VS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDV----GKPVSEYFGI-TGEAPKVLAY 113 (313)
Q Consensus 48 ~~~~~~v~f~~--------~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~----~~~l~~~~~v-~~~~~P~i~~ 113 (313)
.++..+++|+. +| +.|-+..|.+.++-+...+.+.|+.|+..+-.. +..+-...++ .+. ||++=
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~v--PTLlr 101 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAV--PTLLR 101 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeec--ceeeE
Confidence 34445566653 56 899999999999999888899999999876321 3344455566 555 88766
Q ss_pred EcC
Q 021368 114 TGN 116 (313)
Q Consensus 114 ~~~ 116 (313)
+++
T Consensus 102 w~~ 104 (128)
T KOG3425|consen 102 WKR 104 (128)
T ss_pred EcC
Confidence 653
No 375
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=88.50 E-value=1.2 Score=30.61 Aligned_cols=55 Identities=15% Similarity=0.176 Sum_probs=39.0
Q ss_pred ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEE
Q 021368 51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAY 113 (313)
Q Consensus 51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~ 113 (313)
..+++|..+| +.|.+....|.+. + +.+..+|++.......+....|.... |.+.+
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~~-----g-i~y~~idi~~~~~~~~~~~~~g~~~v--P~i~i 63 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKEK-----G-YDFEEIPLGNDARGRSLRAVTGATTV--PQVFI 63 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHHc-----C-CCcEEEECCCChHHHHHHHHHCCCCc--CeEEE
Confidence 4566777788 9999999999753 3 66667787764323455566688877 99843
No 376
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=88.41 E-value=0.38 Score=38.16 Aligned_cols=92 Identities=13% Similarity=0.064 Sum_probs=59.4
Q ss_pred HHHHHHhcCCCceEEeCC--CcccccccCCCccEEEEEeeC-CchhhhhH-HHH--HHHHhccCeEEEEEEeCCCccccc
Q 021368 22 IADFVFSNKLPLVTIFTR--ENAPSVFESPIKNQLLLFAVS-NDSEKLLP-VFE--EAAKSFKGKLIFVYVQMDNEDVGK 95 (313)
Q Consensus 22 l~~fi~~~~~~~v~~lt~--~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~-~~~--~~a~~~~~~v~f~~vd~~~~~~~~ 95 (313)
-.-|+..+..+.|....- +.+...-+.+++.+|.++.+| +.|..+.. .|. ++|..++..+.-++||.++ .+
T Consensus 8 ~Spyl~~ha~~~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree---~P 84 (163)
T PF03190_consen 8 KSPYLRQHAHNPVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREE---RP 84 (163)
T ss_dssp --HHHHTTTTSSS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT----H
T ss_pred CCHHHHHhccCCCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEecccc---Cc
Confidence 345778887777766554 446666667778888899999 88998875 443 4888888888888999887 56
Q ss_pred chhhhh--------CCCCCCCcEEEEEcCCC
Q 021368 96 PVSEYF--------GITGEAPKVLAYTGNDD 118 (313)
Q Consensus 96 ~l~~~~--------~v~~~~~P~i~~~~~~~ 118 (313)
.+-..| |.-+. |+.+|..++.
T Consensus 85 did~~y~~~~~~~~~~gGw--Pl~vfltPdg 113 (163)
T PF03190_consen 85 DIDKIYMNAVQAMSGSGGW--PLTVFLTPDG 113 (163)
T ss_dssp HHHHHHHHHHHHHHS---S--SEEEEE-TTS
T ss_pred cHHHHHHHHHHHhcCCCCC--CceEEECCCC
Confidence 777776 67677 9888888765
No 377
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=88.15 E-value=1.4 Score=36.15 Aligned_cols=37 Identities=8% Similarity=0.294 Sum_probs=27.3
Q ss_pred ccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHH
Q 021368 94 GKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFG 137 (313)
Q Consensus 94 ~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi 137 (313)
+..+++.+||++. |+++ +.+|. .+.|..+.+.|.+++
T Consensus 161 ~~~l~~~~gi~gt--Ptii-~~~G~----~~~G~~~~~~l~~~L 197 (197)
T cd03020 161 NLALGRQLGVNGT--PTIV-LADGR----VVPGAPPAAQLEALL 197 (197)
T ss_pred HHHHHHHcCCCcc--cEEE-ECCCe----EecCCCCHHHHHhhC
Confidence 4678889999999 9996 54443 257878888887663
No 378
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=88.09 E-value=1.5 Score=30.67 Aligned_cols=77 Identities=9% Similarity=0.134 Sum_probs=49.6
Q ss_pred EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcc-cccchhhhhCC--CCCCCcEEEEEcCCCCceeccCCCC
Q 021368 53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED-VGKPVSEYFGI--TGEAPKVLAYTGNDDAKKHILDGEL 128 (313)
Q Consensus 53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~-~~~~l~~~~~v--~~~~~P~i~~~~~~~~~~~~~~g~~ 128 (313)
+++|..+| +.|.++...|.++..++.+ +.+..+|.+... ....+....|- ... |.+ ++++. + ..
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~-i~~~~idi~~~~~~~~~l~~~~g~~~~tV--P~i-fi~g~----~-ig--- 69 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERAD-FEFRYIDIHAEGISKADLEKTVGKPVETV--PQI-FVDEK----H-VG--- 69 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCC-CcEEEEECCCCHHHHHHHHHHhCCCCCCc--CeE-EECCE----E-ec---
Confidence 45566777 9999999999998877655 777888876421 01245555553 455 998 44321 1 12
Q ss_pred CHHHHHHHHHHHh
Q 021368 129 TLDKIKTFGEDFL 141 (313)
Q Consensus 129 ~~~~i~~fi~~~~ 141 (313)
..++|.+++++..
T Consensus 70 G~~dl~~~~~~~~ 82 (86)
T TIGR02183 70 GCTDFEQLVKENF 82 (86)
T ss_pred CHHHHHHHHHhcc
Confidence 4577778777753
No 379
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=87.91 E-value=7.3 Score=27.86 Aligned_cols=73 Identities=12% Similarity=0.056 Sum_probs=50.9
Q ss_pred ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCC
Q 021368 51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELT 129 (313)
Q Consensus 51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~ 129 (313)
++.+.+|.+. ..|+.+...++++|.--.. |.+...+.. . .. |++.+..++....++|.|-..
T Consensus 20 pV~l~~f~~~~~~~~e~~~ll~e~a~lSdk-I~~~~~~~~------~--------~~--P~~~i~~~~~~~gIrF~GiP~ 82 (94)
T cd02974 20 PVELVASLDDSEKSAELLELLEEIASLSDK-ITLEEDNDD------E--------RK--PSFSINRPGEDTGIRFAGIPM 82 (94)
T ss_pred CEEEEEEeCCCcchHHHHHHHHHHHHhCCc-eEEEEecCC------C--------CC--CEEEEecCCCcccEEEEecCC
Confidence 4445566665 8899999999998876544 665432221 1 34 888887766545678899888
Q ss_pred HHHHHHHHHHH
Q 021368 130 LDKIKTFGEDF 140 (313)
Q Consensus 130 ~~~i~~fi~~~ 140 (313)
-.++..||..+
T Consensus 83 GhEf~Slilai 93 (94)
T cd02974 83 GHEFTSLVLAL 93 (94)
T ss_pred chhHHHHHHHh
Confidence 88888888654
No 380
>PRK13191 putative peroxiredoxin; Provisional
Probab=87.59 E-value=3 Score=34.88 Aligned_cols=85 Identities=12% Similarity=0.081 Sum_probs=56.0
Q ss_pred EEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCccc------------------------ccchhhhhCCC-----
Q 021368 56 LFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDV------------------------GKPVSEYFGIT----- 104 (313)
Q Consensus 56 f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~~------------------------~~~l~~~~~v~----- 104 (313)
|.++| +.|....+.|.+++.+|.. .+.++.|.++.... +..+++.||+.
T Consensus 41 ~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~ 120 (215)
T PRK13191 41 HPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAESS 120 (215)
T ss_pred eCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHcCCcccccC
Confidence 45666 8999999999999999974 26666666654221 23556677774
Q ss_pred CCCCcEEEEEcCCCCceecc----CCCCCHHHHHHHHHHH
Q 021368 105 GEAPKVLAYTGNDDAKKHIL----DGELTLDKIKTFGEDF 140 (313)
Q Consensus 105 ~~~~P~i~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~ 140 (313)
+...|+.++++.++...+.+ ...++.+++.+.+..+
T Consensus 121 ~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 121 TATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred CceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 12247777777665333322 2347899998888765
No 381
>PRK13599 putative peroxiredoxin; Provisional
Probab=87.15 E-value=4.2 Score=34.02 Aligned_cols=86 Identities=14% Similarity=0.059 Sum_probs=57.2
Q ss_pred EEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcc------------------------cccchhhhhCCCC---
Q 021368 55 LLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED------------------------VGKPVSEYFGITG--- 105 (313)
Q Consensus 55 ~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~------------------------~~~~l~~~~~v~~--- 105 (313)
.|.++| +.|....+.|.++..+|.. .+.++.|.++.-. .+..+++.||+..
T Consensus 35 ~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~ 114 (215)
T PRK13599 35 SHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGK 114 (215)
T ss_pred EeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCCccCC
Confidence 356677 9999999999999999964 3666666665410 1346778888741
Q ss_pred --CCCcEEEEEcCCCCceec----cCCCCCHHHHHHHHHHH
Q 021368 106 --EAPKVLAYTGNDDAKKHI----LDGELTLDKIKTFGEDF 140 (313)
Q Consensus 106 --~~~P~i~~~~~~~~~~~~----~~g~~~~~~i~~fi~~~ 140 (313)
...|+.++++.++...+. ....+..++|.+.+...
T Consensus 115 ~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 115 GTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred CCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 123777788765533222 13347888898888764
No 382
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=86.38 E-value=4.9 Score=33.08 Aligned_cols=92 Identities=16% Similarity=0.172 Sum_probs=57.2
Q ss_pred CCccEEEEEe-eC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcc-------------------------cccchhhh
Q 021368 49 PIKNQLLLFA-VS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED-------------------------VGKPVSEY 100 (313)
Q Consensus 49 ~~~~~v~f~~-~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~-------------------------~~~~l~~~ 100 (313)
++..+++||. .| ..|....+.|.+++.+|.. .+.++.|.++... ....+++.
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ 115 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARS 115 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHHH
Confidence 3345555664 45 8999888999999999985 3677777766421 12357788
Q ss_pred hCCC----CCCCcEEEEEcCCCCceecc----CCCCCHHHHHHHHHHH
Q 021368 101 FGIT----GEAPKVLAYTGNDDAKKHIL----DGELTLDKIKTFGEDF 140 (313)
Q Consensus 101 ~~v~----~~~~P~i~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~ 140 (313)
||+. +...|+.++++.++...+.. ...++.+++.+.+...
T Consensus 116 ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 116 YGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred cCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 8885 22236777777665322221 2235666666666544
No 383
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=86.14 E-value=1.3 Score=28.38 Aligned_cols=52 Identities=12% Similarity=0.181 Sum_probs=35.2
Q ss_pred EEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccc-cchhhhhCCCCCCCcEEEE
Q 021368 54 LLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVG-KPVSEYFGITGEAPKVLAY 113 (313)
Q Consensus 54 v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~-~~l~~~~~v~~~~~P~i~~ 113 (313)
++|..++ +.|..+...|++.. +.+..+|.+..... ..+.+..|...+ |++++
T Consensus 2 ~vy~~~~C~~C~~~~~~L~~~~------i~y~~~dv~~~~~~~~~l~~~~g~~~~--P~v~i 55 (60)
T PF00462_consen 2 VVYTKPGCPYCKKAKEFLDEKG------IPYEEVDVDEDEEAREELKELSGVRTV--PQVFI 55 (60)
T ss_dssp EEEESTTSHHHHHHHHHHHHTT------BEEEEEEGGGSHHHHHHHHHHHSSSSS--SEEEE
T ss_pred EEEEcCCCcCHHHHHHHHHHcC------CeeeEcccccchhHHHHHHHHcCCCcc--CEEEE
Confidence 4566667 99999999985432 66778888774212 333344488888 99954
No 384
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=85.79 E-value=1.2 Score=37.06 Aligned_cols=40 Identities=28% Similarity=0.624 Sum_probs=30.5
Q ss_pred CCcEEEEEeCCCCccchhhhHHH---HHHHHHhcCCCcEEEEEEe
Q 021368 178 SKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMD 219 (313)
Q Consensus 178 ~k~~lv~fy~~~C~~C~~~~~~~---~~la~~~~~~~~v~~~~vd 219 (313)
+++.+|.|++-.|++|..+.+.+ ..+.+.+.+ ++.+..+.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~--~v~~~~~~ 79 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE--GTKMTKYH 79 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC--CCeEEEec
Confidence 46779999999999999999866 677777765 44555444
No 385
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=85.27 E-value=1.9 Score=29.39 Aligned_cols=55 Identities=7% Similarity=0.057 Sum_probs=36.7
Q ss_pred EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCccc--ccchhhhhCCCCCCCcEEEEE
Q 021368 53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDV--GKPVSEYFGITGEAPKVLAYT 114 (313)
Q Consensus 53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~--~~~l~~~~~v~~~~~P~i~~~ 114 (313)
+++|+.+| +.|..+.+.|.++... ..+..++...... ...+.+..|...+ |.+ ++
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~g~~~~--P~v-~~ 59 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK----PAVVELDQHEDGSEIQDYLQELTGQRTV--PNV-FI 59 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC----cEEEEEeCCCChHHHHHHHHHHhCCCCC--CeE-EE
Confidence 46677888 9999999999987763 4456666654210 0134455688777 987 44
No 386
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=85.16 E-value=3.9 Score=34.86 Aligned_cols=70 Identities=16% Similarity=0.092 Sum_probs=43.9
Q ss_pred CeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceEEEEe
Q 021368 161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFP 240 (313)
Q Consensus 161 ~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i~~~~ 240 (313)
...+++..+ +..++|+.+++..+.||+.|...+-.+..+-.+|..- .+....-|... .-..+|++.|..
T Consensus 45 ~~~kvsn~d----~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~-~l~~~~S~~~d------~~pn~Ptl~F~~ 113 (249)
T PF06053_consen 45 NFFKVSNQD----LAPNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNF-SLEYHYSDPYD------NYPNTPTLIFNN 113 (249)
T ss_pred ceeeecCcc----cCCCCeeEEEEEecccCccchhhHHHHHHHHHhcCCe-eeEEeecCccc------CCCCCCeEEEec
Confidence 344555443 3467899999999999999977776666666666553 33333333211 124678877764
Q ss_pred C
Q 021368 241 A 241 (313)
Q Consensus 241 ~ 241 (313)
-
T Consensus 114 ~ 114 (249)
T PF06053_consen 114 Y 114 (249)
T ss_pred C
Confidence 4
No 387
>PRK10329 glutaredoxin-like protein; Provisional
Probab=85.01 E-value=4.2 Score=28.08 Aligned_cols=75 Identities=12% Similarity=0.066 Sum_probs=48.6
Q ss_pred EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHH
Q 021368 53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLD 131 (313)
Q Consensus 53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~ 131 (313)
+.+|..++ +.|.+....|.+ .| |.|-.+|.+........++..|.... |++.+ ++ .. -+....+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~g-I~~~~idi~~~~~~~~~~~~~g~~~v--Pvv~i-~~---~~---~~Gf~~~ 67 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RG-FDFEMINVDRVPEAAETLRAQGFRQL--PVVIA-GD---LS---WSGFRPD 67 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CC-CceEEEECCCCHHHHHHHHHcCCCCc--CEEEE-CC---EE---EecCCHH
Confidence 34455677 999999998865 34 78888898874312223344566666 99854 22 11 2257888
Q ss_pred HHHHHHHHHhc
Q 021368 132 KIKTFGEDFLE 142 (313)
Q Consensus 132 ~i~~fi~~~~~ 142 (313)
.|.+.+...+.
T Consensus 68 ~l~~~~~~~~~ 78 (81)
T PRK10329 68 MINRLHPAPHA 78 (81)
T ss_pred HHHHHHHhhhh
Confidence 88888877643
No 388
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=84.51 E-value=1.8 Score=33.82 Aligned_cols=49 Identities=6% Similarity=0.161 Sum_probs=34.3
Q ss_pred EEEEeCC------CCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--c----cCCC----CcCceEEE
Q 021368 182 LLEIYAP------WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKS----DGFPTILF 238 (313)
Q Consensus 182 lv~fy~~------~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~----~~~v----~~~P~i~~ 238 (313)
++.|.++ +|++|..+..+|... .+.+-.+|++.... + .++. ..+|.+++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~--------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF--------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 4567777 899999998888765 46777888876543 1 1222 57888777
No 389
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=83.57 E-value=2 Score=28.04 Aligned_cols=52 Identities=8% Similarity=0.091 Sum_probs=34.5
Q ss_pred EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCccc-ccchhhhhCCCCCCCcEEE
Q 021368 53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDV-GKPVSEYFGITGEAPKVLA 112 (313)
Q Consensus 53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~-~~~l~~~~~v~~~~~P~i~ 112 (313)
+++|.+++ +.|+.+...|.+.. +.+..+|...... ...+.+..|.... |++.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~--P~~~ 55 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTV--PQIF 55 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCc--CEEE
Confidence 45667788 99999999988765 6677788876331 1223344566555 8873
No 390
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=83.34 E-value=1.1 Score=38.94 Aligned_cols=87 Identities=18% Similarity=0.166 Sum_probs=65.9
Q ss_pred CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCC
Q 021368 49 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE 127 (313)
Q Consensus 49 ~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~ 127 (313)
...+-..||..| +..+...|.+.-.+..|.. +....++-.. --+.+...+|+++. |++.+.... -+..|.|.
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~-i~h~~vee~~--~lpsv~s~~~~~~~--ps~~~~n~t--~~~~~~~~ 148 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS-IQHFAVEESQ--ALPSVFSSYGIHSE--PSNLMLNQT--CPASYRGE 148 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccc-cccccHHHHh--hcccchhccccccC--Ccceeeccc--cchhhccc
Confidence 445567799999 8788888898888888885 3333333222 14678899999999 998777543 36678999
Q ss_pred CCHHHHHHHHHHHhc
Q 021368 128 LTLDKIKTFGEDFLE 142 (313)
Q Consensus 128 ~~~~~i~~fi~~~~~ 142 (313)
++..+|.+|..++++
T Consensus 149 r~l~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 149 RDLASLVNFYTEITP 163 (319)
T ss_pred ccHHHHHHHHHhhcc
Confidence 999999999999875
No 391
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=82.75 E-value=37 Score=30.73 Aligned_cols=162 Identities=11% Similarity=0.107 Sum_probs=101.6
Q ss_pred CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021368 61 NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF 140 (313)
Q Consensus 61 ~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~ 140 (313)
...+++...+.++|..- +++.+-..+.. .+. |.+.+-+.+......|-|-.--.++..++...
T Consensus 31 ~~s~~~~~ll~eia~~S-~kis~~~~~~~--------------~Rk--pSF~i~r~g~~~gv~FAglPlGHEftSlVLaL 93 (520)
T COG3634 31 EKSKEIKELLDEIASLS-DKISLEEDSDL--------------VRK--PSFSINRPGEDQGVRFAGLPLGHEFTSLVLAL 93 (520)
T ss_pred cccHHHHHHHHHHHhhc-cceeeeecCcc--------------ccC--CceeecCCCcccceEEecCcccchHHHHHHHH
Confidence 56788888888888766 43655443111 123 88888887776677777766666666666554
Q ss_pred hc--CCCCCCCCCCCCCCCCCCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEE
Q 021368 141 LE--GKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM 218 (313)
Q Consensus 141 ~~--~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~v 218 (313)
+. |+- -.+..+-+++.-.-++...+=-|++-.|..|...-..+.-++-. ++++.-..+
T Consensus 94 lqv~G~p-----------------pk~~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvl---Np~I~H~~I 153 (520)
T COG3634 94 LQVGGHP-----------------PKEDQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVL---NPRIKHTAI 153 (520)
T ss_pred HHhcCCC-----------------CchhHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhc---CCCceeEEe
Confidence 42 211 12333334443222345567777788888887666655555432 346777778
Q ss_pred eCCCccc--ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHh
Q 021368 219 DGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK 266 (313)
Q Consensus 219 d~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~ 266 (313)
|...... ..-+|..+|++++ +|.. .=+|-++.++|+.-|..
T Consensus 154 dGa~Fq~Evear~IMaVPtvfl--nGe~-----fg~GRmtleeilaki~~ 196 (520)
T COG3634 154 DGALFQDEVEARNIMAVPTVFL--NGEE-----FGQGRMTLEEILAKIDT 196 (520)
T ss_pred cchhhHhHHHhccceecceEEE--cchh-----hcccceeHHHHHHHhcC
Confidence 8776554 4568999999887 5554 34567888888877755
No 392
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=82.41 E-value=11 Score=27.55 Aligned_cols=101 Identities=17% Similarity=0.253 Sum_probs=57.8
Q ss_pred EeCCCcccccccCCCccEEEEEeeC--CchhhhhHHHHHHHHhccC--------eEEEEEEeCCCcccccchhhhh-CCC
Q 021368 36 IFTRENAPSVFESPIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKG--------KLIFVYVQMDNEDVGKPVSEYF-GIT 104 (313)
Q Consensus 36 ~lt~~~~~~~~~~~~~~~v~f~~~~--~~c~~~~~~~~~~a~~~~~--------~v~f~~vd~~~~~~~~~l~~~~-~v~ 104 (313)
.|++.+...+-.. +.+|+|-... +.-+...+.+..+|.+... ......+..+++ -....+.| |+.
T Consensus 3 ~Lse~~a~~Ln~~--p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede--~tdsLRDf~nL~ 78 (116)
T cd03071 3 ELSESNAVQLNEG--PCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDD--MTDSLRDYTNLP 78 (116)
T ss_pred cccHHHHHhhcCC--ceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccch--HHHHHHHhcCCC
Confidence 3444444433222 4555555433 5677777888777765441 222223333331 22444444 555
Q ss_pred CCCCcEEEEEcCCCCceeccC-CCCCHHHHHHHHHHHh
Q 021368 105 GEAPKVLAYTGNDDAKKHILD-GELTLDKIKTFGEDFL 141 (313)
Q Consensus 105 ~~~~P~i~~~~~~~~~~~~~~-g~~~~~~i~~fi~~~~ 141 (313)
.. -|.+++.+-.....|... ..+|.+.+.+|+.+++
T Consensus 79 d~-~P~LviLDip~r~~~v~~~eeIT~e~~~~fv~~yl 115 (116)
T cd03071 79 EA-APLLTILDMSARAKYVMDVEEITPAIVEAFVSDFL 115 (116)
T ss_pred cc-CceEEEEeccccceEeCchHhcCHHHHHHHHHHhh
Confidence 33 588888876555555543 4689999999999986
No 393
>PHA03075 glutaredoxin-like protein; Provisional
Probab=82.13 E-value=1.1 Score=32.90 Aligned_cols=29 Identities=21% Similarity=0.502 Sum_probs=26.0
Q ss_pred CcEEEEEeCCCCccchhhhHHHHHHHHHh
Q 021368 179 KDVLLEIYAPWCGHCQAFEPTYNKLAKHL 207 (313)
Q Consensus 179 k~~lv~fy~~~C~~C~~~~~~~~~la~~~ 207 (313)
|.++|.|..|.|+-|.....++.++.++|
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY 30 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY 30 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence 57899999999999999999998887765
No 394
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=81.98 E-value=2.7 Score=28.15 Aligned_cols=67 Identities=16% Similarity=0.151 Sum_probs=40.6
Q ss_pred EEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHH
Q 021368 55 LLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKI 133 (313)
Q Consensus 55 ~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i 133 (313)
+|..++ +.|.+....|.+. + +.|..+|.++...........|.... |++.+ +++. .-+..+.+.|
T Consensus 3 ly~~~~Cp~C~~ak~~L~~~-----~-i~~~~~di~~~~~~~~~~~~~g~~~v--P~v~~-~g~~-----~~~G~~~~~~ 68 (72)
T TIGR02194 3 VYSKNNCVQCKMTKKALEEH-----G-IAFEEINIDEQPEAIDYVKAQGFRQV--PVIVA-DGDL-----SWSGFRPDKL 68 (72)
T ss_pred EEeCCCCHHHHHHHHHHHHC-----C-CceEEEECCCCHHHHHHHHHcCCccc--CEEEE-CCCc-----EEeccCHHHH
Confidence 445566 9999999998752 3 67778888764312233334477767 99844 3221 2334666666
Q ss_pred HH
Q 021368 134 KT 135 (313)
Q Consensus 134 ~~ 135 (313)
.+
T Consensus 69 ~~ 70 (72)
T TIGR02194 69 KA 70 (72)
T ss_pred Hh
Confidence 54
No 395
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=81.75 E-value=5 Score=27.81 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=42.7
Q ss_pred EEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCccc-----------------------------ccchhhhhCC
Q 021368 54 LLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDV-----------------------------GKPVSEYFGI 103 (313)
Q Consensus 54 v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~-----------------------------~~~l~~~~~v 103 (313)
++|+... ++|..+.+.+.++.....+++.+..+...-... ...+...+|+
T Consensus 2 ~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 81 (98)
T cd02972 2 VEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALGV 81 (98)
T ss_pred eEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCC
Confidence 4566667 999999999999987777777777776533210 1234567899
Q ss_pred CCCCCcEEEEEc
Q 021368 104 TGEAPKVLAYTG 115 (313)
Q Consensus 104 ~~~~~P~i~~~~ 115 (313)
.+. |++++.+
T Consensus 82 ~g~--Pt~v~~~ 91 (98)
T cd02972 82 TGT--PTFVVNG 91 (98)
T ss_pred CCC--CEEEECC
Confidence 888 9996653
No 396
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=80.32 E-value=4.5 Score=26.91 Aligned_cols=68 Identities=9% Similarity=0.188 Sum_probs=41.8
Q ss_pred EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHH
Q 021368 53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLD 131 (313)
Q Consensus 53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~ 131 (313)
+++|..++ +.|.+....|.+. + +.+..+|.+.......+....|...+ |.+ ++++. . +. ..+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-----~-i~~~~~~v~~~~~~~~~~~~~g~~~v--P~i-fi~g~---~--ig---g~~ 65 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-----G-ISYEEIPLGKDITGRSLRAVTGAMTV--PQV-FIDGE---L--IG---GSD 65 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----C-CCcEEEECCCChhHHHHHHHhCCCCc--CeE-EECCE---E--Ee---CHH
Confidence 45566677 9999999998853 3 66777787664312233344577777 998 44321 1 12 366
Q ss_pred HHHHHH
Q 021368 132 KIKTFG 137 (313)
Q Consensus 132 ~i~~fi 137 (313)
+|.+|+
T Consensus 66 ~l~~~l 71 (72)
T cd03029 66 DLEKYF 71 (72)
T ss_pred HHHHHh
Confidence 666664
No 397
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=79.54 E-value=18 Score=27.05 Aligned_cols=87 Identities=13% Similarity=0.179 Sum_probs=59.8
Q ss_pred ccEEEEEeeC---CchhhhhHHHHHHHHhccC-eEEEEEEeCCCccccc-----------chhhhhCCCCCCCcEEEEEc
Q 021368 51 KNQLLLFAVS---NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGK-----------PVSEYFGITGEAPKVLAYTG 115 (313)
Q Consensus 51 ~~~v~f~~~~---~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~~~~-----------~l~~~~~v~~~~~P~i~~~~ 115 (313)
..++++|++. +..+.....|.+..+.+.. .+.++.+-.... .. .+-+.|++.......+ +++
T Consensus 10 ~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~--~~~~~~~~~~~~~~lr~~l~~~~~~f~~v-LiG 86 (118)
T PF13778_consen 10 NRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGA--RSPGKPLSPEDIQALRKRLRIPPGGFTVV-LIG 86 (118)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCcc--ccccCcCCHHHHHHHHHHhCCCCCceEEE-EEe
Confidence 5677788876 3467778888887777776 355555533332 23 6778899775533444 555
Q ss_pred CCCCceeccCCCCCHHHHHHHHHHH
Q 021368 116 NDDAKKHILDGELTLDKIKTFGEDF 140 (313)
Q Consensus 116 ~~~~~~~~~~g~~~~~~i~~fi~~~ 140 (313)
.+++.+..+....+.++|-..|..+
T Consensus 87 KDG~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 87 KDGGVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred CCCcEEEecCCCCCHHHHHHHHhCC
Confidence 5556777888899999999998875
No 398
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=78.84 E-value=7.9 Score=25.97 Aligned_cols=73 Identities=10% Similarity=0.067 Sum_probs=39.9
Q ss_pred EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc---ccCCCCcCceEEEEeCCCCCcCceeeccCcCHH
Q 021368 182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVV 258 (313)
Q Consensus 182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~---~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~ 258 (313)
+.+|+.+.|+.|+..+-.+.... +.+-.++.+.... ..-....+|++..=..|... . -.+..
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~g--------i~y~~~~~~~~~~~~~~~~~~~~vP~l~~~~~~~~~----~---l~eS~ 66 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHG--------IPYEVVEVNPVSRKEIKWSSYKKVPILRVESGGDGQ----Q---LVDSS 66 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCC--------CceEEEECCchhHHHHHHhCCCccCEEEECCCCCcc----E---EEcHH
Confidence 45678899999998876555542 2222233332111 11223467887652111110 1 13567
Q ss_pred HHHHHHHhcCC
Q 021368 259 ALYKFLKKNAS 269 (313)
Q Consensus 259 ~l~~fi~~~~~ 269 (313)
.|.+||.+.++
T Consensus 67 ~I~~yL~~~~~ 77 (77)
T cd03040 67 VIISTLKTYLG 77 (77)
T ss_pred HHHHHHHHHcC
Confidence 88899988764
No 399
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=78.32 E-value=2.1 Score=31.19 Aligned_cols=78 Identities=8% Similarity=0.066 Sum_probs=42.9
Q ss_pred EEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--c---c-CCCCcCceEEEEeCCCCCcCceee--ccC
Q 021368 183 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H---R-AKSDGFPTILFFPAGNKSFDPINV--DVD 254 (313)
Q Consensus 183 v~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~---~-~~v~~~P~i~~~~~g~~~~~~~~y--~g~ 254 (313)
..|+.++|+.|+.....+.+. ++.+-.+|+..... . . .+-.+.+.--++.......+-..- ...
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~~ 73 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH--------GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDE 73 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc--------CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCccccC
Confidence 578899999999988777764 35556666655433 1 1 122232222233222111010011 235
Q ss_pred cCHHHHHHHHHhcC
Q 021368 255 RTVVALYKFLKKNA 268 (313)
Q Consensus 255 ~~~~~l~~fi~~~~ 268 (313)
.+.++++++|.++-
T Consensus 74 ls~~e~~~~l~~~p 87 (105)
T cd02977 74 LSDEEALELMAEHP 87 (105)
T ss_pred CCHHHHHHHHHhCc
Confidence 67888999998874
No 400
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=76.85 E-value=9 Score=25.51 Aligned_cols=53 Identities=15% Similarity=0.170 Sum_probs=35.5
Q ss_pred EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCccc-ccchhhhhCCCCCCCcEEEE
Q 021368 53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDV-GKPVSEYFGITGEAPKVLAY 113 (313)
Q Consensus 53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~-~~~l~~~~~v~~~~~P~i~~ 113 (313)
+++|..++ +.|++....|++. + +.+..+|...... ..++.+..|-... |.+++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-----g-i~~~~~di~~~~~~~~el~~~~g~~~v--P~v~i 57 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-----G-LPYVEINIDIFPERKAELEERTGSSVV--PQIFF 57 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-----C-CceEEEECCCCHHHHHHHHHHhCCCCc--CEEEE
Confidence 45667777 9999999998863 3 6677778876321 2245555566666 98833
No 401
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.43 E-value=2.9 Score=28.26 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=18.2
Q ss_pred EEEeCCCCccchhhhHHHHHH
Q 021368 183 LEIYAPWCGHCQAFEPTYNKL 203 (313)
Q Consensus 183 v~fy~~~C~~C~~~~~~~~~l 203 (313)
++|++.-|+.|..+...+.++
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl 25 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL 25 (85)
T ss_pred eeeccccCcchHHHHHHHHHc
Confidence 679999999999888877776
No 402
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=75.18 E-value=8.9 Score=25.88 Aligned_cols=54 Identities=17% Similarity=0.205 Sum_probs=42.2
Q ss_pred EEEEeeC--CchhhhhHHHHHHHHhc-cCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEE
Q 021368 54 LLLFAVS--NDSEKLLPVFEEAAKSF-KGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLA 112 (313)
Q Consensus 54 v~f~~~~--~~c~~~~~~~~~~a~~~-~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~ 112 (313)
+.+|... +...+....+.++.+.+ .+...+-.||..+ ++.++..++|-+. |+++
T Consensus 4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~---~P~lAe~~~ivAt--PtLv 60 (72)
T cd02978 4 LRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLK---QPQLAEEDKIVAT--PTLV 60 (72)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEccc---CHhHHhhCCEEEe--chhh
Confidence 3455544 66777788888877765 5679999999998 7899999999988 8864
No 403
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=74.65 E-value=6.1 Score=28.46 Aligned_cols=56 Identities=13% Similarity=0.116 Sum_probs=35.2
Q ss_pred ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchh----hhhCCCCCCCcEEEEEc
Q 021368 51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVS----EYFGITGEAPKVLAYTG 115 (313)
Q Consensus 51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~----~~~~v~~~~~P~i~~~~ 115 (313)
..+++|..++ +.|.++...|.+.. +.|..+|.+......++. +..|.+.. |.+ |++
T Consensus 8 ~~Vvvysk~~Cp~C~~ak~~L~~~~------i~~~~vdid~~~~~~~~~~~l~~~tg~~tv--P~V-fi~ 68 (99)
T TIGR02189 8 KAVVIFSRSSCCMCHVVKRLLLTLG------VNPAVHEIDKEPAGKDIENALSRLGCSPAV--PAV-FVG 68 (99)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcC------CCCEEEEcCCCccHHHHHHHHHHhcCCCCc--CeE-EEC
Confidence 4566777788 99999999988763 444566666533123332 23356666 988 443
No 404
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=73.80 E-value=14 Score=24.91 Aligned_cols=69 Identities=12% Similarity=0.084 Sum_probs=38.3
Q ss_pred EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc--cc---cC-CCCcCceEEEEeCCCCCcCceeeccCc
Q 021368 182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HH---RA-KSDGFPTILFFPAGNKSFDPINVDVDR 255 (313)
Q Consensus 182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~--~~---~~-~v~~~P~i~~~~~g~~~~~~~~y~g~~ 255 (313)
+.+|+.++|+.|....-.+.+.. +.+-.+++.... .. .. ....+|++.. .+|... . .
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~g--------i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~-~~~~~~----l----~ 64 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELE--------LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVD-PNTGVQ----M----F 64 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcC--------CcEEEEECCCChHHHHHHHHhCCCCcccEEEe-CCCCeE----E----E
Confidence 34677789999998876666552 333334443322 11 22 3357788743 222211 1 3
Q ss_pred CHHHHHHHHHhc
Q 021368 256 TVVALYKFLKKN 267 (313)
Q Consensus 256 ~~~~l~~fi~~~ 267 (313)
+...|.+||.+.
T Consensus 65 es~~I~~yL~~~ 76 (77)
T cd03041 65 ESADIVKYLFKT 76 (77)
T ss_pred cHHHHHHHHHHh
Confidence 567788888764
No 405
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=72.66 E-value=3.9 Score=29.88 Aligned_cols=35 Identities=6% Similarity=-0.093 Sum_probs=24.8
Q ss_pred EEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc
Q 021368 183 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 225 (313)
Q Consensus 183 v~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~ 225 (313)
.+|+.++|+.|+.....+.+- ++.+-.+|....+.
T Consensus 2 ~iy~~~~C~~crka~~~L~~~--------~i~~~~~di~~~p~ 36 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR--------GVAYTFHDYRKDGL 36 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc--------CCCeEEEecccCCC
Confidence 578899999999987766654 35555566665543
No 406
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=72.09 E-value=9.2 Score=30.06 Aligned_cols=47 Identities=17% Similarity=0.248 Sum_probs=32.9
Q ss_pred CCcEEE-EEeCCCCccchhh-hHHHHHHHHHhcCCCcE-EEEEEeCCCccc
Q 021368 178 SKDVLL-EIYAPWCGHCQAF-EPTYNKLAKHLRGVDSI-VIAKMDGTTNEH 225 (313)
Q Consensus 178 ~k~~lv-~fy~~~C~~C~~~-~~~~~~la~~~~~~~~v-~~~~vd~~~~~~ 225 (313)
+++++| +|...||+.|... .+.|.+....|++. ++ .+..+.++....
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~-g~~~V~~iS~D~~~~ 78 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAK-GVDEVICVSVNDPFV 78 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHC-CCCEEEEEECCCHHH
Confidence 344444 4457899999987 89999999998764 34 356666665444
No 407
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=70.48 E-value=4.6 Score=29.78 Aligned_cols=77 Identities=14% Similarity=0.254 Sum_probs=43.3
Q ss_pred EEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--cc----CCCCcCceEEEEeCCCCCcCceeecc---
Q 021368 183 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HR----AKSDGFPTILFFPAGNKSFDPINVDV--- 253 (313)
Q Consensus 183 v~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~----~~v~~~P~i~~~~~g~~~~~~~~y~g--- 253 (313)
..|+.++|+.|+.....+.+- ++.+-.+|...+.. .. ++..+.|..-+++......+-....+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 73 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH--------GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLKDKLP 73 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc--------CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhCCcccccc
Confidence 468899999999988777664 45666667665543 11 12334554444433322111111111
Q ss_pred CcCHHHHHHHHHhc
Q 021368 254 DRTVVALYKFLKKN 267 (313)
Q Consensus 254 ~~~~~~l~~fi~~~ 267 (313)
..+.+++++.|.++
T Consensus 74 ~~s~~e~~~~l~~~ 87 (111)
T cd03036 74 SLSEEEALELLSSD 87 (111)
T ss_pred cCCHHHHHHHHHhC
Confidence 24567777777776
No 408
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=70.23 E-value=14 Score=24.43 Aligned_cols=52 Identities=6% Similarity=0.050 Sum_probs=32.9
Q ss_pred EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCccc-ccchhhhhCCC-CCCCcEEE
Q 021368 53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDV-GKPVSEYFGIT-GEAPKVLA 112 (313)
Q Consensus 53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~-~~~l~~~~~v~-~~~~P~i~ 112 (313)
+++|..++ +.|.++...|.+. + +.|..+|.+.... ...+.+..|.. .+ |.++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~-i~~~~i~i~~~~~~~~~~~~~~~~~~~v--P~v~ 56 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----G-VDYEEIDVDGDPALREEMINRSGGRRTV--PQIF 56 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----C-CcEEEEECCCCHHHHHHHHHHhCCCCcc--CEEE
Confidence 34566677 9999999998863 3 6667777776320 12333445655 55 9884
No 409
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=69.42 E-value=5.5 Score=30.40 Aligned_cols=36 Identities=11% Similarity=0.189 Sum_probs=25.1
Q ss_pred EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc
Q 021368 182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 225 (313)
Q Consensus 182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~ 225 (313)
+..|+.++|+.|+.....+.+. ++.+-.+|+.....
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~--------gi~~~~idi~~~~~ 37 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH--------DIPFTERNIFSSPL 37 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc--------CCCcEEeeccCChh
Confidence 4578899999999987666654 35555666655443
No 410
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=69.09 E-value=16 Score=24.03 Aligned_cols=20 Identities=10% Similarity=0.016 Sum_probs=15.2
Q ss_pred EEeCCCCccchhhhHHHHHH
Q 021368 184 EIYAPWCGHCQAFEPTYNKL 203 (313)
Q Consensus 184 ~fy~~~C~~C~~~~~~~~~l 203 (313)
+++.++|++|...+-.+...
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~ 22 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLK 22 (71)
T ss_pred eEecCCCcHhHHHHHHHHHc
Confidence 56788999999887665554
No 411
>PRK09301 circadian clock protein KaiB; Provisional
Probab=66.87 E-value=19 Score=26.15 Aligned_cols=67 Identities=19% Similarity=0.183 Sum_probs=48.0
Q ss_pred EEEeeC-CchhhhhHHHHHHHH-hccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCC
Q 021368 55 LLFAVS-NDSEKLLPVFEEAAK-SFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGEL 128 (313)
Q Consensus 55 ~f~~~~-~~c~~~~~~~~~~a~-~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~ 128 (313)
+|++.. +..++....+.++.+ .+.|...+-.||..+ ++.++..++|-+. ||++=.-+.. ..++-|+.
T Consensus 11 LyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~---qPelAE~~~IvAT--PTLIK~~P~P--~rriiGDl 79 (103)
T PRK09301 11 LYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLK---NPQLAEEDKILAT--PTLAKILPPP--VRKIIGDL 79 (103)
T ss_pred EEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEccc---CHhHHhHCCeEEe--cHHhhcCCCC--cceeeccc
Confidence 355555 778888888888766 566778889999988 8899999999988 8864333332 22345654
No 412
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=65.48 E-value=12 Score=29.48 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=39.8
Q ss_pred CCccEEEEEeeC--CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcccccchhhhhCCC
Q 021368 49 PIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGIT 104 (313)
Q Consensus 49 ~~~~~v~f~~~~--~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~~~~~l~~~~~v~ 104 (313)
+..++++||-.. +-|-.-+-.|++...+|.. .+.+.-|-.+...-+..+++++|+.
T Consensus 30 Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~ 88 (157)
T COG1225 30 GKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLT 88 (157)
T ss_pred CCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Confidence 335666677655 7899999999999999986 2444444444433378899998885
No 413
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=65.37 E-value=17 Score=29.15 Aligned_cols=61 Identities=15% Similarity=0.079 Sum_probs=39.4
Q ss_pred eEEEcCcChHHHhhcCCCcEEEEEeCCCCc-cchhhhHHHHHHHHHhcCC-CcEEEEEEeCCCc
Q 021368 162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCG-HCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTN 223 (313)
Q Consensus 162 v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~-~C~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~ 223 (313)
++.-+++.+...- -.+|+++|.|.-..|+ .|..+...+.++.+.+... ..+.+..|.++..
T Consensus 37 L~d~~G~~~~~~~-~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~ 99 (174)
T PF02630_consen 37 LTDQDGKTVTLDD-LKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPE 99 (174)
T ss_dssp EEETTSSEEEGGG-GTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTT
T ss_pred EEcCCCCEecHHH-hCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCC
Confidence 3333444444322 2578999999888884 6988888888888777643 3567666666654
No 414
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=65.13 E-value=7 Score=29.08 Aligned_cols=77 Identities=13% Similarity=0.053 Sum_probs=42.7
Q ss_pred EEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccC----CCCcC-ceEEEEeCCCCCcCcee--e-c
Q 021368 183 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRA----KSDGF-PTILFFPAGNKSFDPIN--V-D 252 (313)
Q Consensus 183 v~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~----~v~~~-P~i~~~~~g~~~~~~~~--y-~ 252 (313)
..|+.++|+.|+.....+.+. ++.+-.+|...... ..+ ...+. +.-++=+.+... +-.. . .
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~el~~l~~~~~~~~~~lin~~~~~~-k~l~~~~~~ 72 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN--------GIEYQFIDIGEDGPTREELLDILSLLEDGIDPLLNTRGQSY-RALNTSNTF 72 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc--------CCceEEEecCCChhhHHHHHHHHHHcCCCHHHheeCCCcch-hhCCchhhc
Confidence 468899999999998777763 45666677665443 111 12222 222332333322 1111 1 1
Q ss_pred cCcCHHHHHHHHHhcC
Q 021368 253 VDRTVVALYKFLKKNA 268 (313)
Q Consensus 253 g~~~~~~l~~fi~~~~ 268 (313)
...+.++++++|.++-
T Consensus 73 ~~ls~~e~~~~i~~~p 88 (117)
T TIGR01617 73 LDLSDKEALELLAEDP 88 (117)
T ss_pred ccCCHHHHHHHHHhCc
Confidence 2456677888887773
No 415
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=64.70 E-value=19 Score=28.48 Aligned_cols=45 Identities=16% Similarity=0.324 Sum_probs=32.4
Q ss_pred CCCcEEEEEeC-CCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368 177 ESKDVLLEIYA-PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 222 (313)
Q Consensus 177 ~~k~~lv~fy~-~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~ 222 (313)
.++.++|+||- .+++.|-.-.-.|......|+.. +..+.-|..+.
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~-~a~V~GIS~Ds 74 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL-GAVVLGISPDS 74 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC-CCEEEEEeCCC
Confidence 36689999994 67888888888888888888765 44554455554
No 416
>PRK12559 transcriptional regulator Spx; Provisional
Probab=64.64 E-value=8.6 Score=29.37 Aligned_cols=36 Identities=11% Similarity=0.168 Sum_probs=24.4
Q ss_pred EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc
Q 021368 182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 225 (313)
Q Consensus 182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~ 225 (313)
+..|+.++|+.|+.....+.+- ++.+-.+|...++.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~--------gi~~~~~di~~~~~ 37 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN--------QIDYTEKNIVSNSM 37 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc--------CCCeEEEEeeCCcC
Confidence 5678899999999987666554 34555556554443
No 417
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=63.95 E-value=19 Score=25.27 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=43.1
Q ss_pred EEEeeC-CchhhhhHHHHHHHH-hccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEE
Q 021368 55 LLFAVS-NDSEKLLPVFEEAAK-SFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYT 114 (313)
Q Consensus 55 ~f~~~~-~~c~~~~~~~~~~a~-~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~ 114 (313)
+|++.. +...+....+.++.+ .+.|...+-.||..+ ++.++..++|-+. |+++=.
T Consensus 8 Lyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~---qP~lAE~~~IvAT--PtLIK~ 64 (87)
T TIGR02654 8 LYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLK---NPQLAEEDKILAT--PTLSKI 64 (87)
T ss_pred EEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEccc---CHhHHhHCCEEEe--cHHhhc
Confidence 355555 778888888888766 566778889999988 8899999999988 886433
No 418
>PHA03050 glutaredoxin; Provisional
Probab=63.85 E-value=8.9 Score=28.17 Aligned_cols=58 Identities=5% Similarity=0.024 Sum_probs=37.1
Q ss_pred ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccc----cchhhhhCCCCCCCcEEEE
Q 021368 51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVG----KPVSEYFGITGEAPKVLAY 113 (313)
Q Consensus 51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~----~~l~~~~~v~~~~~P~i~~ 113 (313)
..+++|..+| +.|.+....|++..-... .|..+|.+..... ..+.+.-|-+.. |.+++
T Consensus 13 ~~V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tV--P~IfI 75 (108)
T PHA03050 13 NKVTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTV--PRIFF 75 (108)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCc--CEEEE
Confidence 4567778888 999999999987754333 3455566542111 234455577766 99943
No 419
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=63.81 E-value=16 Score=30.60 Aligned_cols=44 Identities=20% Similarity=0.351 Sum_probs=35.9
Q ss_pred chhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCCCC
Q 021368 96 PVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLK 146 (313)
Q Consensus 96 ~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~~ 146 (313)
..++++||++. |+++| ++ .+...|..+.+.+..-|.+.++.+..
T Consensus 175 ~~A~e~gI~gV--P~fv~---d~--~~~V~Gaq~~~v~~~al~~~~~~~~~ 218 (225)
T COG2761 175 AAAQEMGIRGV--PTFVF---DG--KYAVSGAQPYDVLEDALRQLLAEKAE 218 (225)
T ss_pred HHHHHCCCccC--ceEEE---cC--cEeecCCCCHHHHHHHHHHHHhcccc
Confidence 56789999999 99977 22 45679999999999999999875543
No 420
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=63.45 E-value=38 Score=22.49 Aligned_cols=69 Identities=12% Similarity=0.156 Sum_probs=42.4
Q ss_pred EEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc---ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHH
Q 021368 184 EIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVAL 260 (313)
Q Consensus 184 ~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~---~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l 260 (313)
+++.++|+.|+..+-.+... +. .+.+..++...... .......+|++. .+|..+ .+...|
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~-----~i-~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l---------~dS~~I 63 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEK-----GI-PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVL---------TDSAAI 63 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHH-----TE-EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEE---------ESHHHH
T ss_pred CCCcCCChHHHHHHHHHHHc-----CC-eEEEeccCcccchhHHHhhcccccceEEE--ECCEEE---------eCHHHH
Confidence 46788999998887555544 21 34455555443322 122345789886 444432 367889
Q ss_pred HHHHHhcCC
Q 021368 261 YKFLKKNAS 269 (313)
Q Consensus 261 ~~fi~~~~~ 269 (313)
++||.++-+
T Consensus 64 ~~yL~~~~~ 72 (75)
T PF13417_consen 64 IEYLEERYP 72 (75)
T ss_dssp HHHHHHHST
T ss_pred HHHHHHHcC
Confidence 999988754
No 421
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=63.04 E-value=11 Score=27.97 Aligned_cols=78 Identities=9% Similarity=0.130 Sum_probs=41.9
Q ss_pred EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--cc----CCCCcCceEEEEe-CCCCCcCceeec-c
Q 021368 182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HR----AKSDGFPTILFFP-AGNKSFDPINVD-V 253 (313)
Q Consensus 182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~----~~v~~~P~i~~~~-~g~~~~~~~~y~-g 253 (313)
+.+|+.++|+.|+.....+.+. ++.+-.+|...... .. +...+.|.--+++ .+... +-.... .
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~--------gi~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~n~~~~~~-k~l~~~~~ 72 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH--------QIPFEERNLFKQPLTKEELKEILSLTENGVEDIISTRSKAF-KNLNIDID 72 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--------CCceEEEecCCCcchHHHHHHHHHHhcCCHHHHHhcCcHHH-HHcCCCcc
Confidence 4578889999999988777764 35555666655543 11 1112223322332 33222 111111 2
Q ss_pred CcCHHHHHHHHHhcC
Q 021368 254 DRTVVALYKFLKKNA 268 (313)
Q Consensus 254 ~~~~~~l~~fi~~~~ 268 (313)
..+.+++++.|.++-
T Consensus 73 ~ls~~e~i~~l~~~p 87 (115)
T cd03032 73 ELSLSELIRLISEHP 87 (115)
T ss_pred cCCHHHHHHHHHhCh
Confidence 356677788887763
No 422
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=61.53 E-value=13 Score=29.96 Aligned_cols=34 Identities=26% Similarity=0.505 Sum_probs=25.6
Q ss_pred EEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEe
Q 021368 184 EIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 219 (313)
Q Consensus 184 ~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd 219 (313)
+|..|.|+.|-.+.+.+.++...+.. .+.+-.+-
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~--~i~~~~i~ 35 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN--KIEFRFIP 35 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T--TEEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC--cEEEEEEE
Confidence 68999999999999999999999987 45444443
No 423
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=61.06 E-value=17 Score=27.78 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=26.9
Q ss_pred ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeC
Q 021368 51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQM 88 (313)
Q Consensus 51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~ 88 (313)
..+++|+..+ ++|..+.+.+.++..++. ++.+..++.
T Consensus 7 ~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~-~~~~~~~~~ 44 (154)
T cd03023 7 VTIVEFFDYNCGYCKKLAPELEKLLKEDP-DVRVVFKEF 44 (154)
T ss_pred EEEEEEECCCChhHHHhhHHHHHHHHHCC-CceEEEEeC
Confidence 3445566666 999999999999887774 466666554
No 424
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=60.91 E-value=18 Score=28.04 Aligned_cols=40 Identities=20% Similarity=0.224 Sum_probs=31.3
Q ss_pred ccEEEEEeeC--CchhhhhHHHHHHHHhc--cCeEEEEEEeCCC
Q 021368 51 KNQLLLFAVS--NDSEKLLPVFEEAAKSF--KGKLIFVYVQMDN 90 (313)
Q Consensus 51 ~~~v~f~~~~--~~c~~~~~~~~~~a~~~--~~~v~f~~vd~~~ 90 (313)
+..|..|.+. ++|..+.+.+.++-+++ .+++.|..++.-.
T Consensus 13 ~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~ 56 (162)
T PF13462_consen 13 PITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPL 56 (162)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSS
T ss_pred CeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccc
Confidence 3445555555 99999999999999999 7889999988744
No 425
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=59.99 E-value=16 Score=28.89 Aligned_cols=39 Identities=15% Similarity=0.229 Sum_probs=30.6
Q ss_pred ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCC
Q 021368 51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMD 89 (313)
Q Consensus 51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~ 89 (313)
..++.|+... ++|..+.+.+.++..++.+++.|..+...
T Consensus 17 ~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~ 56 (178)
T cd03019 17 PEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPVV 56 (178)
T ss_pred cEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCCc
Confidence 4455566666 99999999999999999887777766553
No 426
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=59.79 E-value=21 Score=24.50 Aligned_cols=52 Identities=4% Similarity=0.078 Sum_probs=32.8
Q ss_pred EEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcc--cccchhhhh-CCCCCCCcEEEE
Q 021368 54 LLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED--VGKPVSEYF-GITGEAPKVLAY 113 (313)
Q Consensus 54 v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~--~~~~l~~~~-~v~~~~~P~i~~ 113 (313)
++|-.++ +.|.+....|.+.. +.|..+|.+... ......+.. |.+.+ |.|++
T Consensus 4 ~iyt~~~CPyC~~ak~~L~~~g------~~~~~i~~~~~~~~~~~~~~~~~~g~~tv--P~I~i 59 (80)
T COG0695 4 TIYTKPGCPYCKRAKRLLDRKG------VDYEEIDVDDDEPEEAREMVKRGKGQRTV--PQIFI 59 (80)
T ss_pred EEEECCCCchHHHHHHHHHHcC------CCcEEEEecCCcHHHHHHHHHHhCCCCCc--CEEEE
Confidence 4455556 99999999988332 555555655532 123455555 77877 99854
No 427
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=57.94 E-value=7.5 Score=31.34 Aligned_cols=37 Identities=16% Similarity=0.310 Sum_probs=15.1
Q ss_pred cchhhhhCCCCCCCcEEEEEcCCC-CceeccCCCCCHHHH
Q 021368 95 KPVSEYFGITGEAPKVLAYTGNDD-AKKHILDGELTLDKI 133 (313)
Q Consensus 95 ~~l~~~~~v~~~~~P~i~~~~~~~-~~~~~~~g~~~~~~i 133 (313)
..+++.+||+++ |++++++... ...+...|..+.+.+
T Consensus 137 ~~la~~m~I~~~--Ptlvi~~~~~~~~g~~i~g~~~~~~~ 174 (176)
T PF13743_consen 137 QQLAREMGITGF--PTLVIFNENNEEYGILIEGYYSYEVY 174 (176)
T ss_dssp HHHHHHTT-SSS--SEEEEE--------------------
T ss_pred HHHHHHcCCCCC--CEEEEEeccccccccccccccccccc
Confidence 478899999999 9999998332 345566776666554
No 428
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=56.40 E-value=8.6 Score=26.01 Aligned_cols=52 Identities=6% Similarity=0.073 Sum_probs=32.1
Q ss_pred EEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcc-cccchhhhhCCCCCCCcEEEE
Q 021368 54 LLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED-VGKPVSEYFGITGEAPKVLAY 113 (313)
Q Consensus 54 v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~-~~~~l~~~~~v~~~~~P~i~~ 113 (313)
.+|..++ +.|.+....|.+.. +.+..+|.+... .-.++.+..|.... |++++
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~~------i~~~~~di~~~~~~~~~~~~~~g~~~v--P~i~i 55 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSKG------VTFTEIRVDGDPALRDEMMQRSGRRTV--PQIFI 55 (79)
T ss_pred EEEecCCChhHHHHHHHHHHcC------CCcEEEEecCCHHHHHHHHHHhCCCCc--CEEEE
Confidence 3455677 99999999998642 456666666532 02233344466656 99843
No 429
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=56.38 E-value=40 Score=25.71 Aligned_cols=53 Identities=8% Similarity=0.016 Sum_probs=36.3
Q ss_pred EEeCCCcccccCCCCcCceEEEEeCCC--------CCcCceeeccCcCHHHHHHHHHhcCC
Q 021368 217 KMDGTTNEHHRAKSDGFPTILFFPAGN--------KSFDPINVDVDRTVVALYKFLKKNAS 269 (313)
Q Consensus 217 ~vd~~~~~~~~~~v~~~P~i~~~~~g~--------~~~~~~~y~g~~~~~~l~~fi~~~~~ 269 (313)
.+.++...-.+|+|+.+|++++.+++. .........|..+.+.-++.+.+..+
T Consensus 56 ~v~IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~~g~ 116 (130)
T TIGR02742 56 GVQIDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQDGD 116 (130)
T ss_pred cEEEChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHHhCC
Confidence 344454444899999999999998774 00012366688888888888876643
No 430
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=55.58 E-value=80 Score=26.78 Aligned_cols=56 Identities=13% Similarity=0.042 Sum_probs=36.3
Q ss_pred CceEEeCCCc---ccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEe
Q 021368 32 PLVTIFTREN---APSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQ 87 (313)
Q Consensus 32 ~~v~~lt~~~---~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd 87 (313)
..|..++... +-++.+.+++.++-|=+.. ++...-.+.|++++++|.+.+-|..|-
T Consensus 82 s~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VY 141 (237)
T PF00837_consen 82 SPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVY 141 (237)
T ss_pred CceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhh
Confidence 3566666655 3345566666666665554 666777888888999998855555444
No 431
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=55.48 E-value=40 Score=22.06 Aligned_cols=50 Identities=4% Similarity=0.044 Sum_probs=28.5
Q ss_pred EEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc---ccCCCCcCceEEE
Q 021368 183 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---HRAKSDGFPTILF 238 (313)
Q Consensus 183 v~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~---~~~~v~~~P~i~~ 238 (313)
++|+.+||+.|...+-.+....- .+.+..+|...... .......+|++..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl------~~e~~~v~~~~~~~~~~~~np~~~vP~L~~ 54 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI------TVELREVELKNKPAEMLAASPKGTVPVLVL 54 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC------CcEEEEeCCCCCCHHHHHHCCCCCCCEEEE
Confidence 46788999999888765555422 24444555432211 1123457788754
No 432
>PRK10638 glutaredoxin 3; Provisional
Probab=54.80 E-value=29 Score=23.75 Aligned_cols=53 Identities=9% Similarity=0.107 Sum_probs=33.3
Q ss_pred EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCccc-ccchhhhhCCCCCCCcEEEE
Q 021368 53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDV-GKPVSEYFGITGEAPKVLAY 113 (313)
Q Consensus 53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~-~~~l~~~~~v~~~~~P~i~~ 113 (313)
+++|..++ +.|.+....|++. + +.+..+|++.... ...+.+..|.... |++.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----g-i~y~~~dv~~~~~~~~~l~~~~g~~~v--P~i~~ 58 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----G-VSFQEIPIDGDAAKREEMIKRSGRTTV--PQIFI 58 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----C-CCcEEEECCCCHHHHHHHHHHhCCCCc--CEEEE
Confidence 34444566 9999999998864 2 5566677765321 2234455577666 98833
No 433
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=53.82 E-value=18 Score=27.58 Aligned_cols=36 Identities=8% Similarity=0.075 Sum_probs=24.8
Q ss_pred EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc
Q 021368 182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 225 (313)
Q Consensus 182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~ 225 (313)
+..|+.++|+.|+.....+.+- ++.+-.+|......
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~--------~i~~~~~d~~~~~~ 37 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH--------QLSYKEQNLGKEPL 37 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc--------CCCeEEEECCCCCC
Confidence 4578889999999877555543 46666677665544
No 434
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=52.65 E-value=62 Score=21.00 Aligned_cols=67 Identities=9% Similarity=0.004 Sum_probs=36.5
Q ss_pred EEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--cc-CCCCcCceEEEEeCCCCCcCceeeccCcCHHH
Q 021368 183 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HR-AKSDGFPTILFFPAGNKSFDPINVDVDRTVVA 259 (313)
Q Consensus 183 v~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~-~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~ 259 (313)
.+|+.++|+.|....-.+...+-. +....+|...... .+ .....+|++.. +|... .....
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~------~~~~~v~~~~~~~~~~~~~p~~~vP~l~~--~~~~l---------~es~a 64 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS------VEIIDVDPDNPPEDLAELNPYGTVPTLVD--RDLVL---------YESRI 64 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc------cEEEEcCCCCCCHHHHhhCCCCCCCEEEE--CCEEE---------EcHHH
Confidence 467889999998887666554322 3333344332211 12 22347786642 22221 35577
Q ss_pred HHHHHHh
Q 021368 260 LYKFLKK 266 (313)
Q Consensus 260 l~~fi~~ 266 (313)
|.+||.+
T Consensus 65 I~~yL~~ 71 (73)
T cd03059 65 IMEYLDE 71 (73)
T ss_pred HHHHHHh
Confidence 8888765
No 435
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=52.38 E-value=24 Score=25.49 Aligned_cols=52 Identities=17% Similarity=0.262 Sum_probs=31.1
Q ss_pred CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCC---CCcCceE-EEEeCCCCC
Q 021368 187 APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK---SDGFPTI-LFFPAGNKS 245 (313)
Q Consensus 187 ~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~---v~~~P~i-~~~~~g~~~ 245 (313)
.|.|+...+...++.... -+.|+.+|+-.++.-+-+ ...+||+ -+|-+|..+
T Consensus 27 ~P~CGFS~~~vqiL~~~g-------~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfv 82 (105)
T COG0278 27 FPQCGFSAQAVQILSACG-------VVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFV 82 (105)
T ss_pred CCCCCccHHHHHHHHHcC-------CcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEe
Confidence 367887776666555541 167888998888762222 3455665 444466543
No 436
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=50.61 E-value=28 Score=27.31 Aligned_cols=53 Identities=21% Similarity=0.233 Sum_probs=37.1
Q ss_pred ccEEEEEeeC--Cchhhh-hHHHHHHHHhccCe-E-EEEEEeCCCcccccchhhhhCC
Q 021368 51 KNQLLLFAVS--NDSEKL-LPVFEEAAKSFKGK-L-IFVYVQMDNEDVGKPVSEYFGI 103 (313)
Q Consensus 51 ~~~v~f~~~~--~~c~~~-~~~~~~~a~~~~~~-v-~f~~vd~~~~~~~~~l~~~~~v 103 (313)
..+++||-.. +.|..- .+.|.+...+|... + .++.|-++....+.++++++++
T Consensus 31 ~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 31 KVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred cEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence 4445555433 889997 99999999999742 4 4666677664336678888887
No 437
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=50.12 E-value=40 Score=21.12 Aligned_cols=50 Identities=10% Similarity=0.002 Sum_probs=28.4
Q ss_pred EEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc----ccCCCCcCceEEE
Q 021368 183 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTILF 238 (313)
Q Consensus 183 v~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~----~~~~v~~~P~i~~ 238 (313)
.+|+.++|+.|......+....- .+....++...... .......+|++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i------~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGL------PYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC------CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 36778899999988766665522 23333444332211 1234557787765
No 438
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=49.88 E-value=88 Score=28.90 Aligned_cols=91 Identities=12% Similarity=0.180 Sum_probs=54.9
Q ss_pred CCCccEEEEEeeC-Cchhhhh-HHHHH--HHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceec
Q 021368 48 SPIKNQLLLFAVS-NDSEKLL-PVFEE--AAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHI 123 (313)
Q Consensus 48 ~~~~~~v~f~~~~-~~c~~~~-~~~~~--~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~ 123 (313)
.+...+|+|.+.. ...+.+. -.|.+ ++..+-..+.-+.|+..... ...+..-|-+... |.+++++..+..-..
T Consensus 17 ~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~a-a~qFs~IYp~v~v--Ps~ffIg~sGtpLev 93 (506)
T KOG2507|consen 17 GKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVA-ATQFSAIYPYVSV--PSIFFIGFSGTPLEV 93 (506)
T ss_pred cCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchh-hhhhhhhcccccc--cceeeecCCCceeEE
Confidence 3334455555555 5666665 23433 33333344666777766544 5567777777766 888787665433334
Q ss_pred cCCCCCHHHHHHHHHHHh
Q 021368 124 LDGELTLDKIKTFGEDFL 141 (313)
Q Consensus 124 ~~g~~~~~~i~~fi~~~~ 141 (313)
..|..+.++|..-|.+.+
T Consensus 94 itg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 94 ITGFVTADELASSIEKVW 111 (506)
T ss_pred eeccccHHHHHHHHHHHH
Confidence 578888888877776654
No 439
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=48.50 E-value=1.3e+02 Score=23.34 Aligned_cols=73 Identities=14% Similarity=0.229 Sum_probs=46.8
Q ss_pred cEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCC----cCceEEEEeCCCCCcCceeecc
Q 021368 180 DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSD----GFPTILFFPAGNKSFDPINVDV 253 (313)
Q Consensus 180 ~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~----~~P~i~~~~~g~~~~~~~~y~g 253 (313)
.-++.|++|.|+=|......++.. .+.+..+..+.... ++++|. +-=|.++ +|. .+.|
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~~--------Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~Gy------~vEG 89 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKAN--------GFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NGY------YVEG 89 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHhC--------CcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cCE------EEec
Confidence 357889999999998776655532 46666555554443 456653 3334433 222 5678
Q ss_pred CcCHHHHHHHHHhcC
Q 021368 254 DRTVVALYKFLKKNA 268 (313)
Q Consensus 254 ~~~~~~l~~fi~~~~ 268 (313)
..-.+.+.+++++.-
T Consensus 90 HVPa~aI~~ll~~~p 104 (149)
T COG3019 90 HVPAEAIARLLAEKP 104 (149)
T ss_pred cCCHHHHHHHHhCCC
Confidence 778899999887764
No 440
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=45.76 E-value=1.1e+02 Score=28.21 Aligned_cols=85 Identities=14% Similarity=0.104 Sum_probs=48.0
Q ss_pred CCCcEEEEEeCCCCccchhhh-HHH-HH-HHHHhcCCCcEEEEEEeCCCccc----ccCCCCcCceEEEEe-CCCCCcCc
Q 021368 177 ESKDVLLEIYAPWCGHCQAFE-PTY-NK-LAKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTILFFP-AGNKSFDP 248 (313)
Q Consensus 177 ~~k~~lv~fy~~~C~~C~~~~-~~~-~~-la~~~~~~~~v~~~~vd~~~~~~----~~~~v~~~P~i~~~~-~g~~~~~~ 248 (313)
.++.+||.|.+-.-.....|. -.| .. +++.+.. .++.++|+...... .-|.+..+|++++.. .|....
T Consensus 17 ~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~--~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLe-- 92 (506)
T KOG2507|consen 17 GKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSK--YFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLE-- 92 (506)
T ss_pred cCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhc--ceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeE--
Confidence 345666666665444444443 112 11 1222222 46666777666555 346778999999984 455443
Q ss_pred eeeccCcCHHHHHHHHHh
Q 021368 249 INVDVDRTVVALYKFLKK 266 (313)
Q Consensus 249 ~~y~g~~~~~~l~~fi~~ 266 (313)
...|...+++|..-|.+
T Consensus 93 -vitg~v~adeL~~~i~K 109 (506)
T KOG2507|consen 93 -VITGFVTADELASSIEK 109 (506)
T ss_pred -EeeccccHHHHHHHHHH
Confidence 67787777777665544
No 441
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=45.49 E-value=16 Score=26.16 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=30.0
Q ss_pred eC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCccc-ccchhhhhCCCCCCCcEEEE
Q 021368 59 VS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDV-GKPVSEYFGITGEAPKVLAY 113 (313)
Q Consensus 59 ~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~-~~~l~~~~~v~~~~~P~i~~ 113 (313)
+| +.|.+....|.+.. +.|..+|..+... ...+.+..|-..+ |.+.+
T Consensus 25 ~~Cp~C~~ak~lL~~~~------i~~~~~di~~~~~~~~~l~~~tg~~tv--P~vfi 73 (97)
T TIGR00365 25 PQCGFSARAVQILKACG------VPFAYVNVLEDPEIRQGIKEYSNWPTI--PQLYV 73 (97)
T ss_pred CCCchHHHHHHHHHHcC------CCEEEEECCCCHHHHHHHHHHhCCCCC--CEEEE
Confidence 67 89999999998753 4566677755221 1233345566666 98843
No 442
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=45.24 E-value=85 Score=23.05 Aligned_cols=47 Identities=17% Similarity=0.180 Sum_probs=38.5
Q ss_pred CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc
Q 021368 177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 225 (313)
Q Consensus 177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~ 225 (313)
.+++++|.=.|+.|+.-. ....+.++.++|+.. .+.+..+-|.....
T Consensus 20 ~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~-gl~ILaFPcnqFg~ 66 (108)
T PF00255_consen 20 KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDK-GLEILAFPCNQFGN 66 (108)
T ss_dssp TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGG-TEEEEEEEBSTTTT
T ss_pred CCCEEEEEecccccCCcc-ccHHHHHHHHHHhcC-CeEEEeeehHHhcc
Confidence 478899999999999877 667889999999864 58888888887543
No 443
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=44.64 E-value=1.3e+02 Score=22.25 Aligned_cols=53 Identities=11% Similarity=0.071 Sum_probs=32.1
Q ss_pred EEEEeeC--CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcC
Q 021368 54 LLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGN 116 (313)
Q Consensus 54 v~f~~~~--~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~ 116 (313)
++.+.-. +........+.++..+-... ..|.. ++.+.++|+|+.. |++++..+
T Consensus 26 ~~V~RG~~~g~~~~t~~~~~~l~~~~~~~---~~v~I-----dP~~F~~y~I~~V--Pa~V~~~~ 80 (113)
T PF09673_consen 26 VVVFRGFPDGSFKPTAKAIQELLRKDDPC---PGVQI-----DPRLFRQYNITAV--PAFVVVKD 80 (113)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhccCCC---cceeE-----ChhHHhhCCceEc--CEEEEEcC
Confidence 3344444 43444444555555544432 22333 5689999999999 99988776
No 444
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=44.62 E-value=21 Score=24.96 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=30.2
Q ss_pred eC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCccc-ccchhhhhCCCCCCCcEEEEEc
Q 021368 59 VS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDV-GKPVSEYFGITGEAPKVLAYTG 115 (313)
Q Consensus 59 ~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~-~~~l~~~~~v~~~~~P~i~~~~ 115 (313)
++ +.|.++...|++.. +.|..+|...... ...+.+..|-+.+ |.+ |++
T Consensus 21 ~~Cp~C~~ak~~L~~~~------i~y~~idv~~~~~~~~~l~~~~g~~tv--P~v-fi~ 70 (90)
T cd03028 21 PRCGFSRKVVQILNQLG------VDFGTFDILEDEEVRQGLKEYSNWPTF--PQL-YVN 70 (90)
T ss_pred CCCcHHHHHHHHHHHcC------CCeEEEEcCCCHHHHHHHHHHhCCCCC--CEE-EEC
Confidence 46 88999999988764 5566667655221 2233445576666 998 443
No 445
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=43.69 E-value=37 Score=25.91 Aligned_cols=44 Identities=11% Similarity=0.083 Sum_probs=31.2
Q ss_pred ccchhhhhCCCCCCCcEEEEEcCCC----------CceeccCCCCCHHHHHHHHHH
Q 021368 94 GKPVSEYFGITGEAPKVLAYTGNDD----------AKKHILDGELTLDKIKTFGED 139 (313)
Q Consensus 94 ~~~l~~~~~v~~~~~P~i~~~~~~~----------~~~~~~~g~~~~~~i~~fi~~ 139 (313)
++.+-++|+|+.. |++++..++. .......|..+.+.-.+.+.+
T Consensus 60 dP~lF~~f~I~~V--Pa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~ 113 (130)
T TIGR02742 60 DPQWFKQFDITAV--PAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQ 113 (130)
T ss_pred ChHHHhhcCceEc--CEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHH
Confidence 5689999999999 9998887652 123344677777666665554
No 446
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=41.87 E-value=15 Score=25.55 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=39.1
Q ss_pred CchhhhhHHHHHHHHh-ccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEE
Q 021368 61 NDSEKLLPVFEEAAKS-FKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVL 111 (313)
Q Consensus 61 ~~c~~~~~~~~~~a~~-~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i 111 (313)
....+....+..+... +.+...+-.||..+ ++.++..++|-+. ||+
T Consensus 9 ~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~---~P~lAe~~~ivAt--PtL 55 (82)
T PF07689_consen 9 PSSERAIENLRRLCEEYLGGRYELEVIDVLE---QPELAEEDRIVAT--PTL 55 (82)
T ss_dssp HHHHHHHHHHHHHHHCHCTTTEEEEEEETTT---SHSHHTTTEEECH--HHH
T ss_pred hHHHHHHHHHHHHHHhhCCCcEEEEEEEccc---CHhHHhHCCeeec--ceE
Confidence 5567888888888876 55689999999998 7899999999888 887
No 447
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=40.54 E-value=93 Score=26.17 Aligned_cols=58 Identities=14% Similarity=0.139 Sum_probs=33.8
Q ss_pred EEEcCcChHHHhhcCC-CcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 021368 163 KIVVGNNFDEIVLDES-KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 221 (313)
Q Consensus 163 ~~l~~~~f~~~l~~~~-k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~ 221 (313)
..++.+.-.-.+.+.. +..++.|....|++|+...+.+.+........ ++.+..+...
T Consensus 68 ~~~~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~-~~~~~~~~f~ 126 (244)
T COG1651 68 LYLTPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGKV-RLVLREFPFL 126 (244)
T ss_pred eeecCCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcCCC-ceEEEEeecC
Confidence 3444443333333332 67899999999999988877777743333332 3444444333
No 448
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=39.98 E-value=28 Score=25.77 Aligned_cols=35 Identities=11% Similarity=0.068 Sum_probs=23.7
Q ss_pred EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc
Q 021368 182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 224 (313)
Q Consensus 182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~ 224 (313)
+..|+.|.|..|+.....+.+- ++.+-.+|....+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~--------gi~~~~~d~~~~p 36 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA--------GHEVEVRDLLTEP 36 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc--------CCCcEEeehhcCC
Confidence 4578899999999877665544 3555556655544
No 449
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=38.04 E-value=1.1e+02 Score=25.39 Aligned_cols=57 Identities=25% Similarity=0.297 Sum_probs=36.1
Q ss_pred EcCcChHHHhhcCCCcEEEEEeCCCCc-cchhhhHHHHHHHHHhc-CC-CcE--EEEEEeCCC
Q 021368 165 VVGNNFDEIVLDESKDVLLEIYAPWCG-HCQAFEPTYNKLAKHLR-GV-DSI--VIAKMDGTT 222 (313)
Q Consensus 165 l~~~~f~~~l~~~~k~~lv~fy~~~C~-~C~~~~~~~~~la~~~~-~~-~~v--~~~~vd~~~ 222 (313)
-+++.+...-+ .+++++|+|.=+.|+ -|..+...+..+-.++. .. ..+ .++.+|-..
T Consensus 55 ~~G~~~~~~~l-~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPer 116 (207)
T COG1999 55 QDGKPFTLKDL-KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPER 116 (207)
T ss_pred CCCCEeecccc-CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCC
Confidence 33444444332 688999999877785 59888888888887776 22 244 444555443
No 450
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=37.98 E-value=61 Score=31.85 Aligned_cols=77 Identities=23% Similarity=0.380 Sum_probs=53.4
Q ss_pred EcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHH---HHHHHHhcCCCcEEEEEEeCCCccc-c-cC--------CCC
Q 021368 165 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEH-H-RA--------KSD 231 (313)
Q Consensus 165 l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~---~~la~~~~~~~~v~~~~vd~~~~~~-~-~~--------~v~ 231 (313)
-..+.|.+.- ..+||++|-...+||-=|..|...= .++|..+.. +++-++||-++-+. . .| +--
T Consensus 31 W~~eAf~~A~-~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~--~FV~IKVDREERPDvD~~Ym~~~q~~tG~G 107 (667)
T COG1331 31 WGEEAFAKAK-EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE--NFVPVKVDREERPDVDSLYMNASQAITGQG 107 (667)
T ss_pred cCHHHHHHHH-HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh--CceeeeEChhhccCHHHHHHHHHHHhccCC
Confidence 4556666644 5789999999999999999887652 467777766 67888888666544 1 11 234
Q ss_pred cCc-eEEEEeCCCC
Q 021368 232 GFP-TILFFPAGNK 244 (313)
Q Consensus 232 ~~P-~i~~~~~g~~ 244 (313)
++| ++++-++|+.
T Consensus 108 GWPLtVfLTPd~kP 121 (667)
T COG1331 108 GWPLTVFLTPDGKP 121 (667)
T ss_pred CCceeEEECCCCce
Confidence 889 4555566654
No 451
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=37.32 E-value=76 Score=23.42 Aligned_cols=45 Identities=16% Similarity=0.244 Sum_probs=28.0
Q ss_pred hhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceEEEEeC
Q 021368 195 AFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPA 241 (313)
Q Consensus 195 ~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i~~~~~ 241 (313)
.+.+.+..+.......... ..+.++...-++|+|+.+|++++-++
T Consensus 36 ~~~~t~~~~~~l~~~~~~~--~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC--PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCC--cceeEChhHHhhCCceEcCEEEEEcC
Confidence 4444444454444432212 44555555558999999999999877
No 452
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=36.68 E-value=2e+02 Score=22.32 Aligned_cols=76 Identities=12% Similarity=0.119 Sum_probs=50.5
Q ss_pred ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCC-CCcEEEEEcCCCCceeccCCCC
Q 021368 51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE-APKVLAYTGNDDAKKHILDGEL 128 (313)
Q Consensus 51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~-~~P~i~~~~~~~~~~~~~~g~~ 128 (313)
.-++.+++|. +=|..+...++ .+| +.+..+..++. ..+-+++||... ..-.-++++ .|-.+|..
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk-----~~G-f~Vk~~~~~d~---~alK~~~gIp~e~~SCHT~VI~-----Gy~vEGHV 91 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMK-----ANG-FEVKVVETDDF---LALKRRLGIPYEMQSCHTAVIN-----GYYVEGHV 91 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHH-----hCC-cEEEEeecCcH---HHHHHhcCCChhhccccEEEEc-----CEEEeccC
Confidence 3456677777 99999998876 344 55666666663 367788999643 122233332 23458999
Q ss_pred CHHHHHHHHHHH
Q 021368 129 TLDKIKTFGEDF 140 (313)
Q Consensus 129 ~~~~i~~fi~~~ 140 (313)
..+.|..|+.+-
T Consensus 92 Pa~aI~~ll~~~ 103 (149)
T COG3019 92 PAEAIARLLAEK 103 (149)
T ss_pred CHHHHHHHHhCC
Confidence 999999998774
No 453
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.67 E-value=62 Score=27.21 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=31.5
Q ss_pred ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCCCCc
Q 021368 226 HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF 272 (313)
Q Consensus 226 ~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~ 272 (313)
++++|+++|++++ +++. ...|....+.|..-|++.++...
T Consensus 178 ~e~gI~gVP~fv~--d~~~-----~V~Gaq~~~v~~~al~~~~~~~~ 217 (225)
T COG2761 178 QEMGIRGVPTFVF--DGKY-----AVSGAQPYDVLEDALRQLLAEKA 217 (225)
T ss_pred HHCCCccCceEEE--cCcE-----eecCCCCHHHHHHHHHHHHhccc
Confidence 5789999999999 3332 68898899999999988875443
No 454
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=34.92 E-value=41 Score=24.74 Aligned_cols=35 Identities=9% Similarity=0.033 Sum_probs=24.1
Q ss_pred EEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc
Q 021368 183 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 225 (313)
Q Consensus 183 v~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~ 225 (313)
.+|+.+.|..|+.....+.+- ++.+-.+|......
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~--------~i~~~~~di~~~~~ 36 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA--------GIEPEIVEYLKTPP 36 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC--------CCCeEEEecccCCc
Confidence 578899999999887665554 35555567665543
No 455
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=34.91 E-value=58 Score=26.11 Aligned_cols=27 Identities=37% Similarity=0.753 Sum_probs=24.6
Q ss_pred EEEEeCCCCccchhhhHHHHHHHHHhc
Q 021368 182 LLEIYAPWCGHCQAFEPTYNKLAKHLR 208 (313)
Q Consensus 182 lv~fy~~~C~~C~~~~~~~~~la~~~~ 208 (313)
+.+|+.+.|+.|-...+.+.++...+.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 668899999999999999999999984
No 456
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=34.46 E-value=40 Score=25.17 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=18.3
Q ss_pred EEEEEeCCCCccchhhhHHHHHH
Q 021368 181 VLLEIYAPWCGHCQAFEPTYNKL 203 (313)
Q Consensus 181 ~lv~fy~~~C~~C~~~~~~~~~l 203 (313)
.+..|+.|.|..|+.....+++-
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~ 24 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEH 24 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHc
Confidence 35678899999999888777665
No 457
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=34.35 E-value=1e+02 Score=24.64 Aligned_cols=92 Identities=24% Similarity=0.279 Sum_probs=59.0
Q ss_pred CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCC-CcCceEEE--EeCCCCCcCceeecc
Q 021368 177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKS-DGFPTILF--FPAGNKSFDPINVDV 253 (313)
Q Consensus 177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v-~~~P~i~~--~~~g~~~~~~~~y~g 253 (313)
.++.++|.=-|+.|+.-.+-...+..+-++|+.. ++.+..+-|.....++-+- ..+..++- |..+-.+...+..+|
T Consensus 33 rGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~-Gl~ILaFPCNQFg~QEp~~n~Ei~~f~~~r~~~~f~if~KidVNG 111 (171)
T KOG1651|consen 33 RGKVVLIVNVASQCGLTESQYTELNELYEKYKDQ-GLEILAFPCNQFGNQEPGSNEEILNFVKVRYGAEFPIFQKIDVNG 111 (171)
T ss_pred CCeEEEEEEcccccccchhcchhHHHHHHHHhhC-CeEEEEeccccccCcCCCCcHHHHHHHHhccCCCCccEeEEecCC
Confidence 4788888889999998876667899999999875 6888889998765422110 01111111 111112223346667
Q ss_pred CcCHHHHHHHHHhcCCC
Q 021368 254 DRTVVALYKFLKKNASI 270 (313)
Q Consensus 254 ~~~~~~l~~fi~~~~~~ 270 (313)
. +++.+.+|+.+..+.
T Consensus 112 ~-~~~PlykfLK~~~~~ 127 (171)
T KOG1651|consen 112 D-NADPLYKFLKKVKGG 127 (171)
T ss_pred C-CCchHHHHHhhcCCC
Confidence 4 668899999887653
No 458
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=33.69 E-value=2.8e+02 Score=22.98 Aligned_cols=76 Identities=11% Similarity=0.100 Sum_probs=44.9
Q ss_pred EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc----ccC----------------C--CCcCceEEEE
Q 021368 182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH----HRA----------------K--SDGFPTILFF 239 (313)
Q Consensus 182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~----~~~----------------~--v~~~P~i~~~ 239 (313)
+=+|.+..|..|-..-..+.+++.. . +|....+.++-.+. +.| + --.+|.+++
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~--~--~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV- 76 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAAR--P--DVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV- 76 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHH--T--SSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE-
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcC--C--CEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE-
Confidence 4468888999999999999999988 2 46666666666543 122 2 224698888
Q ss_pred eCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368 240 PAGNKSFDPINVDVDRTVVALYKFLKKNAS 269 (313)
Q Consensus 240 ~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~ 269 (313)
+|.. ...| .+...+..-|.+...
T Consensus 77 -nG~~-----~~~g-~~~~~~~~ai~~~~~ 99 (202)
T PF06764_consen 77 -NGRE-----HRVG-SDRAAVEAAIQAARA 99 (202)
T ss_dssp -TTTE-----EEET-T-HHHHHHHHHHHHH
T ss_pred -CCee-----eeec-cCHHHHHHHHHHhhc
Confidence 6665 4555 455566666665543
No 459
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=33.57 E-value=44 Score=24.66 Aligned_cols=35 Identities=11% Similarity=0.033 Sum_probs=24.8
Q ss_pred EEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc
Q 021368 183 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 225 (313)
Q Consensus 183 v~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~ 225 (313)
.+|+.+.|..|+.....+.+- ++.+-.+|....+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~--------~i~~~~~di~~~p~ 36 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK--------GIEPEVVKYLKNPP 36 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC--------CCCeEEEeccCCCc
Confidence 478899999999987766654 35555567665544
No 460
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=33.51 E-value=2.3e+02 Score=24.30 Aligned_cols=72 Identities=10% Similarity=0.153 Sum_probs=38.9
Q ss_pred EEeCCCcccccccCCCccEEEEE-eeC------CchhhhhHHHHHHHHhccCeEEEEEEeCCCcc-cccchhhhhCCCCC
Q 021368 35 TIFTRENAPSVFESPIKNQLLLF-AVS------NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED-VGKPVSEYFGITGE 106 (313)
Q Consensus 35 ~~lt~~~~~~~~~~~~~~~v~f~-~~~------~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~-~~~~l~~~~~v~~~ 106 (313)
..|++.+.+-+-.-..++-|.+| +.. ..-+.+...|++.+..-.|++.+-.+|-+... ...+.+..+||...
T Consensus 10 ysLS~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~~ 89 (271)
T PF09822_consen 10 YSLSDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQPV 89 (271)
T ss_pred ccCCHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCcc
Confidence 34444444433333345555544 442 22344555566666665668999999985521 12333445888763
No 461
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=33.32 E-value=69 Score=27.09 Aligned_cols=49 Identities=10% Similarity=0.191 Sum_probs=39.4
Q ss_pred cCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCC--CcEEEEEEeCCCcc
Q 021368 176 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV--DSIVIAKMDGTTNE 224 (313)
Q Consensus 176 ~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~--~~v~~~~vd~~~~~ 224 (313)
..+.++||-+-..+|..|..-...+..|-.++... .++.|+.||-....
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~ 74 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEH 74 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcc
Confidence 45788999999999999999888999999888653 47888888855433
No 462
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=33.31 E-value=71 Score=29.63 Aligned_cols=53 Identities=8% Similarity=-0.021 Sum_probs=34.8
Q ss_pred EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhh---------hCCCCCCCcEEEE
Q 021368 53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEY---------FGITGEAPKVLAY 113 (313)
Q Consensus 53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~---------~~v~~~~~P~i~~ 113 (313)
+++|..+| +.|.+....|.+. | +.|..+|.++.....++..+ .|.+.. |++.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----g-i~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tv--P~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----D-IPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTV--PQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----C-CCeEEEECCCChhHHHHHHHHhhccccccCCCCcc--CeEEE
Confidence 55666777 9999999998874 3 77778888753211222222 356666 99844
No 463
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=33.04 E-value=1.9e+02 Score=23.99 Aligned_cols=56 Identities=13% Similarity=0.145 Sum_probs=37.6
Q ss_pred CCCccEEEEEeeC--CchhhhhHHHHHHHHhcc-C---eEEEEEEeCCCcccccchhhhhCC
Q 021368 48 SPIKNQLLLFAVS--NDSEKLLPVFEEAAKSFK-G---KLIFVYVQMDNEDVGKPVSEYFGI 103 (313)
Q Consensus 48 ~~~~~~v~f~~~~--~~c~~~~~~~~~~a~~~~-~---~v~f~~vd~~~~~~~~~l~~~~~v 103 (313)
++++++|.|.-.. .-|......+..+-.++. + ++.++.|-++-+.+-+++.+.|..
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~ 127 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE 127 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhc
Confidence 4556676665454 568877777777777666 2 455555555555556888888888
No 464
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=32.91 E-value=37 Score=22.05 Aligned_cols=21 Identities=5% Similarity=-0.168 Sum_probs=16.5
Q ss_pred EEEeCCCCccchhhhHHHHHH
Q 021368 183 LEIYAPWCGHCQAFEPTYNKL 203 (313)
Q Consensus 183 v~fy~~~C~~C~~~~~~~~~l 203 (313)
.+|+.++|+.|...+-.+...
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~ 22 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEK 22 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHc
Confidence 467788999999888766655
No 465
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=32.71 E-value=56 Score=22.39 Aligned_cols=35 Identities=17% Similarity=0.448 Sum_probs=21.0
Q ss_pred cCceEEEEeC-CCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368 232 GFPTILFFPA-GNKSFDPINVDVDRTVVALYKFLKKNA 268 (313)
Q Consensus 232 ~~P~i~~~~~-g~~~~~~~~y~g~~~~~~l~~fi~~~~ 268 (313)
.-|++.+|.. |..+ ..+... .++.+.+.+||.+.+
T Consensus 41 ~~P~L~l~d~~g~~~-E~i~i~-~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 41 APPELVLLDEDGEEV-ERINIE-KWKTDEIEEFLNEKG 76 (78)
T ss_dssp ---EEEEE-SSS--S-EEEE-S-SSSHCHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCEE-EEEEcc-cCCHHHHHHHHHHhC
Confidence 4599999974 4544 333443 589999999999875
No 466
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=32.34 E-value=51 Score=26.38 Aligned_cols=40 Identities=18% Similarity=0.205 Sum_probs=30.4
Q ss_pred EEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 021368 181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 221 (313)
Q Consensus 181 ~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~ 221 (313)
.+.+|+...|+.|-.+.+.+.++...+.+. .+...-+...
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~-~i~~~p~~l~ 40 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDV-EIEWRPFPLR 40 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTC-EEEEEEESSS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-cEEEeccccc
Confidence 467899999999999999999999998332 4555544433
No 467
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=29.72 E-value=81 Score=25.95 Aligned_cols=45 Identities=18% Similarity=0.031 Sum_probs=31.6
Q ss_pred ccchhhhhCCCCCCCcEEEEEcCCCCceeccCC--CCCHHHHHHHHHHHh
Q 021368 94 GKPVSEYFGITGEAPKVLAYTGNDDAKKHILDG--ELTLDKIKTFGEDFL 141 (313)
Q Consensus 94 ~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g--~~~~~~i~~fi~~~~ 141 (313)
...+|++.|+.++ |++++-.++...... .| ..+.+.+..++.+.+
T Consensus 163 ~r~l~~rlg~~Gf--PTl~le~ng~~~~l~-~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 163 SRRLMQRLGAAGF--PTLALERNGTMYVLG-TGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHHhccCCC--CeeeeeeCCceEecc-CCcccCCcHHHHHHHHHHH
Confidence 3688999999999 999998876533221 23 346677777776654
No 468
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=29.53 E-value=70 Score=26.35 Aligned_cols=39 Identities=10% Similarity=0.129 Sum_probs=30.4
Q ss_pred CccEEEEEeeC-CchhhhhHHH---HHHHHhccCeEEEEEEeC
Q 021368 50 IKNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQM 88 (313)
Q Consensus 50 ~~~~v~f~~~~-~~c~~~~~~~---~~~a~~~~~~v~f~~vd~ 88 (313)
.+.++.||.-. ++|..+.+.+ ..+.+.+.+.+.|..+..
T Consensus 38 ~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence 35577788877 9999999876 788899987777776654
No 469
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=29.06 E-value=1.4e+02 Score=22.57 Aligned_cols=61 Identities=13% Similarity=0.159 Sum_probs=35.2
Q ss_pred HHHHHHHhcCCCcEEEEEEeCCCccc------------ccCCCCcCceEEEEeCCCCCcCceeecc-CcCHHHHHHHHHh
Q 021368 200 YNKLAKHLRGVDSIVIAKMDGTTNEH------------HRAKSDGFPTILFFPAGNKSFDPINVDV-DRTVVALYKFLKK 266 (313)
Q Consensus 200 ~~~la~~~~~~~~v~~~~vd~~~~~~------------~~~~v~~~P~i~~~~~g~~~~~~~~y~g-~~~~~~l~~fi~~ 266 (313)
|..+.+.++.. .+.+.+.+...++. +.-+...+|-+++ +|.. ...| ..+.++|.+|+.-
T Consensus 29 ~a~~~~~Lk~~-gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dGei-----v~~G~YPt~eEl~~~~~i 100 (123)
T PF06953_consen 29 FAADLDWLKEQ-GVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DGEI-----VKTGRYPTNEELAEWLGI 100 (123)
T ss_dssp HHHHHHHHHHT-T-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TTEE-----EEESS---HHHHHHHHT-
T ss_pred HHHHHHHHHhC-CceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CCEE-----EEecCCCCHHHHHHHhCC
Confidence 33333445443 79999999998765 1237789999888 5555 3444 6899999999865
Q ss_pred cC
Q 021368 267 NA 268 (313)
Q Consensus 267 ~~ 268 (313)
..
T Consensus 101 ~~ 102 (123)
T PF06953_consen 101 SF 102 (123)
T ss_dssp -G
T ss_pred Cc
Confidence 53
No 470
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=28.18 E-value=73 Score=25.43 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=27.5
Q ss_pred cchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHH
Q 021368 95 KPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFG 137 (313)
Q Consensus 95 ~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi 137 (313)
......+||.++ |++++ +|+ +.+.|....+.|.+.|
T Consensus 157 ~~~a~~~gv~Gv--P~~vv--~g~---~~~~G~~~~~~l~~~l 192 (193)
T PF01323_consen 157 TAEARQLGVFGV--PTFVV--NGK---YRFFGADRLDELEDAL 192 (193)
T ss_dssp HHHHHHTTCSSS--SEEEE--TTT---EEEESCSSHHHHHHHH
T ss_pred HHHHHHcCCccc--CEEEE--CCE---EEEECCCCHHHHHHHh
Confidence 456688999999 99977 332 5678888888888765
No 471
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=28.16 E-value=2.8e+02 Score=21.32 Aligned_cols=88 Identities=15% Similarity=0.112 Sum_probs=55.0
Q ss_pred CCCcEEEEEeCCCCcc----chhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--------------------ccCCCCc
Q 021368 177 ESKDVLLEIYAPWCGH----CQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--------------------HRAKSDG 232 (313)
Q Consensus 177 ~~k~~lv~fy~~~C~~----C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--------------------~~~~v~~ 232 (313)
..|..+|+.+++.... |++..-. ..+..-+++ ++.+-..|++.... ..++...
T Consensus 20 e~K~L~VYLH~~~~~~t~~Fc~~~L~s-e~Vi~fl~~--nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~ 96 (136)
T cd02990 20 DRKLLAIYLHHDESVLSNVFCSQLLCA-ESIVQYLSQ--NFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQ 96 (136)
T ss_pred hcceEEEEEcCCCCccHHHHHHHHhcC-HHHHHHHHc--CEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCC
Confidence 4688999999887643 4333210 333334444 57777778776531 3457899
Q ss_pred CceEEEEeCC-CCCcCceeeccCcCHHHHHHHHHhc
Q 021368 233 FPTILFFPAG-NKSFDPINVDVDRTVVALYKFLKKN 267 (313)
Q Consensus 233 ~P~i~~~~~g-~~~~~~~~y~g~~~~~~l~~fi~~~ 267 (313)
+|.+.+.-.. +...-.-+..|..+.++|+.-|..-
T Consensus 97 fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ 132 (136)
T cd02990 97 LPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEA 132 (136)
T ss_pred CCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHH
Confidence 9999887432 2221223678999999988877654
No 472
>PHA02151 hypothetical protein
Probab=27.43 E-value=40 Score=26.40 Aligned_cols=16 Identities=25% Similarity=0.862 Sum_probs=13.2
Q ss_pred cCCCcEEEEEeCCCCc
Q 021368 176 DESKDVLLEIYAPWCG 191 (313)
Q Consensus 176 ~~~k~~lv~fy~~~C~ 191 (313)
+....-+|+||..||.
T Consensus 201 nr~h~~~v~fy~kwct 216 (217)
T PHA02151 201 NRNHDRYVHFYKKWCT 216 (217)
T ss_pred cccCceEEEEehhhcc
Confidence 4566789999999995
No 473
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=26.34 E-value=3.7e+02 Score=23.30 Aligned_cols=45 Identities=11% Similarity=0.178 Sum_probs=30.0
Q ss_pred CCcEEEEEeCCCCcc-chhhhHHHHHHHHHhcCCCcE----EEEEEeCCC
Q 021368 178 SKDVLLEIYAPWCGH-CQAFEPTYNKLAKHLRGVDSI----VIAKMDGTT 222 (313)
Q Consensus 178 ~k~~lv~fy~~~C~~-C~~~~~~~~~la~~~~~~~~v----~~~~vd~~~ 222 (313)
+|.++++|.=+.|+. |-.-...+..+.+.+.+...+ .|..+|-..
T Consensus 139 Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeR 188 (280)
T KOG2792|consen 139 GKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPER 188 (280)
T ss_pred cceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCccc
Confidence 678899998899975 766666666666666554332 466666543
No 474
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=26.02 E-value=2.3e+02 Score=22.52 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=29.5
Q ss_pred CCCccEEEEEeeC--CchhhhhHHHHHHHHhccC---eEEEEEEeCCCcccccchhhhh
Q 021368 48 SPIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYF 101 (313)
Q Consensus 48 ~~~~~~v~f~~~~--~~c~~~~~~~~~~a~~~~~---~v~f~~vd~~~~~~~~~l~~~~ 101 (313)
.++..+|.|.-.. ..|......+.++.+.+.. ++.++.|-.+-+.+-++.+++|
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y 109 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKY 109 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHH
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHH
Confidence 3445566655444 6688777777777766553 3555555555433334444433
No 475
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=25.98 E-value=2.1e+02 Score=19.27 Aligned_cols=57 Identities=16% Similarity=0.128 Sum_probs=39.2
Q ss_pred EEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEE
Q 021368 181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF 238 (313)
Q Consensus 181 ~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~ 238 (313)
.+..|-+...+........+.++-+.+-+ ..+.+-.+|+..++. ..+++-..||++=
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~-~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk 61 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLG-GPYELEVIDVLKQPQLAEEDKIVATPTLVK 61 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcC-CcEEEEEEEcccCHhHHhhCCEEEechhhh
Confidence 34455555545556666666666666543 368888889998877 7888999999754
No 476
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=25.76 E-value=2.5e+02 Score=19.92 Aligned_cols=73 Identities=19% Similarity=0.170 Sum_probs=37.1
Q ss_pred cCCCc-EEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceEEEEeCCCCCcCceeeccC
Q 021368 176 DESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVD 254 (313)
Q Consensus 176 ~~~k~-~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i~~~~~g~~~~~~~~y~g~ 254 (313)
+.++. ++.+|-+.. ..-...|+++|..+++.=.+.++.=+... .....+-|. ++|+..... ....|.|.
T Consensus 14 d~~kr~iIgYF~~~~----~~eY~~f~kvA~~lr~dC~F~v~~G~~~~----~~~~~~~~~-i~frp~~~~-~~~~y~G~ 83 (91)
T cd03070 14 DRSKRNIIGYFESKD----SDEYDNFRKVANILRDDCSFLVGFGDVTK----PERPPGDNI-IYFPPGHNA-PDMVYLGS 83 (91)
T ss_pred CcCCceEEEEEcCCC----ChhHHHHHHHHHHHhhcCeEEEEeccccc----cccCCCCCe-EEECCCCCC-CceEEccC
Confidence 34444 555554433 23467899999999874223333222221 122334455 445443222 33689997
Q ss_pred c-CHH
Q 021368 255 R-TVV 258 (313)
Q Consensus 255 ~-~~~ 258 (313)
+ +.+
T Consensus 84 ~tn~~ 88 (91)
T cd03070 84 LTNFD 88 (91)
T ss_pred CCChh
Confidence 6 444
No 477
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=25.17 E-value=88 Score=26.34 Aligned_cols=39 Identities=15% Similarity=0.358 Sum_probs=29.5
Q ss_pred ccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021368 94 GKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF 140 (313)
Q Consensus 94 ~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~ 140 (313)
+..+...+||.++ |++++- ++ .+.|....+.|...|...
T Consensus 204 ~~~~a~~~gv~gT--Pt~~v~-~~-----~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 204 NYKLAQQLGVNGT--PTFIVN-GK-----LVPGLPDLDELKAIIDEA 242 (244)
T ss_pred HHHHHHhcCCCcC--CeEEEC-Ce-----eecCCCCHHHHHHHHHHh
Confidence 4566788899988 999553 22 568888899998888764
No 478
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=23.34 E-value=2.8e+02 Score=25.14 Aligned_cols=75 Identities=17% Similarity=0.197 Sum_probs=45.7
Q ss_pred Cccc-hhhhHHHHHHHHHhcCCC-cEEEEEEeCCCccc-----ccCCCCcC-ceEEEEeCCCCCcCceeeccCcCHHHHH
Q 021368 190 CGHC-QAFEPTYNKLAKHLRGVD-SIVIAKMDGTTNEH-----HRAKSDGF-PTILFFPAGNKSFDPINVDVDRTVVALY 261 (313)
Q Consensus 190 C~~C-~~~~~~~~~la~~~~~~~-~v~~~~vd~~~~~~-----~~~~v~~~-P~i~~~~~g~~~~~~~~y~g~~~~~~l~ 261 (313)
|+.| ..+.....++.++|.+.. .+.++.+-|--|.+ ..+++.+- +...+|.+|+.+. .+.+..-.+.|.
T Consensus 274 CgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~---kv~~~~~~~~l~ 350 (360)
T PRK00366 274 CGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIK---TLPEENIVEELE 350 (360)
T ss_pred CCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEee---eeChHhHHHHHH
Confidence 4444 334455566666676543 48899999965544 35676644 5778888988763 455544455565
Q ss_pred HHHHhc
Q 021368 262 KFLKKN 267 (313)
Q Consensus 262 ~fi~~~ 267 (313)
+-|.+.
T Consensus 351 ~~i~~~ 356 (360)
T PRK00366 351 AEIEAY 356 (360)
T ss_pred HHHHHH
Confidence 555443
No 479
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=22.94 E-value=1.8e+02 Score=24.28 Aligned_cols=28 Identities=11% Similarity=0.317 Sum_probs=25.0
Q ss_pred CchhhhhHHHHHHHHhccCeEEEEEEeC
Q 021368 61 NDSEKLLPVFEEAAKSFKGKLIFVYVQM 88 (313)
Q Consensus 61 ~~c~~~~~~~~~~a~~~~~~v~f~~vd~ 88 (313)
.||-++...++++|.++...+.++.-|.
T Consensus 169 kHsv~iMk~Lrrla~el~KtiviVlHDI 196 (252)
T COG4604 169 KHSVQIMKILRRLADELGKTIVVVLHDI 196 (252)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEEecc
Confidence 6889999999999999999888887776
No 480
>PRK10853 putative reductase; Provisional
Probab=22.40 E-value=75 Score=23.69 Aligned_cols=35 Identities=9% Similarity=-0.098 Sum_probs=24.1
Q ss_pred EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc
Q 021368 182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 224 (313)
Q Consensus 182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~ 224 (313)
+..|..+.|..|+.....+++- ++.+-.+|.-..+
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~--------~i~~~~~d~~k~p 36 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ--------GIDYRFHDYRVDG 36 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc--------CCCcEEeehccCC
Confidence 4567889999999987776654 3555556655544
No 481
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=22.10 E-value=92 Score=23.53 Aligned_cols=23 Identities=9% Similarity=0.145 Sum_probs=18.0
Q ss_pred EEEEEeCCCCccchhhhHHHHHH
Q 021368 181 VLLEIYAPWCGHCQAFEPTYNKL 203 (313)
Q Consensus 181 ~lv~fy~~~C~~C~~~~~~~~~l 203 (313)
.+.+|+.+.|..|+.....+.+-
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~ 24 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKAS 24 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHC
Confidence 35678889999999988777654
No 482
>COG3411 Ferredoxin [Energy production and conversion]
Probab=21.99 E-value=1.4e+02 Score=19.60 Aligned_cols=31 Identities=10% Similarity=0.148 Sum_probs=24.7
Q ss_pred cCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368 232 GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 269 (313)
Q Consensus 232 ~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~ 269 (313)
.=|.+++|+.|- -|.+ .+.+...+++++++.
T Consensus 16 ~gPvl~vYpegv------WY~~-V~p~~a~rIv~~hl~ 46 (64)
T COG3411 16 DGPVLVVYPEGV------WYTR-VDPEDARRIVQSHLL 46 (64)
T ss_pred cCCEEEEecCCe------eEec-cCHHHHHHHHHHHHh
Confidence 349999999982 5655 688889999999975
No 483
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=21.84 E-value=73 Score=20.74 Aligned_cols=21 Identities=29% Similarity=0.243 Sum_probs=15.9
Q ss_pred EEEeCCCCccchhhhHHHHHH
Q 021368 183 LEIYAPWCGHCQAFEPTYNKL 203 (313)
Q Consensus 183 v~fy~~~C~~C~~~~~~~~~l 203 (313)
.+|+.++|+.|+...-.+...
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~ 22 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKAL 22 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHc
Confidence 468889999998776666554
No 484
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=21.11 E-value=2.9e+02 Score=24.87 Aligned_cols=83 Identities=18% Similarity=0.206 Sum_probs=51.1
Q ss_pred EEEEEeCCCCccchhhh-HHHH---HHHHHhcCC-CcEEEEEEeCCCccc-----ccCCCC--cCceEEEEeCCCCCcCc
Q 021368 181 VLLEIYAPWCGHCQAFE-PTYN---KLAKHLRGV-DSIVIAKMDGTTNEH-----HRAKSD--GFPTILFFPAGNKSFDP 248 (313)
Q Consensus 181 ~lv~fy~~~C~~C~~~~-~~~~---~la~~~~~~-~~v~~~~vd~~~~~~-----~~~~v~--~~P~i~~~~~g~~~~~~ 248 (313)
.-+.|.+ |+.|-... ..+. ++-..+... ..+.++-+-|--|.. ..+++. +-|...+|..|+.+.
T Consensus 257 ~~v~~ia--CP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~-- 332 (361)
T COG0821 257 RGVEVIA--CPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIK-- 332 (361)
T ss_pred cCceEEE--CCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEE--
Confidence 3344443 88884443 3333 333333332 247888888877755 345554 368999999998764
Q ss_pred eeeccCcCHHHHHHHHHhcC
Q 021368 249 INVDVDRTVVALYKFLKKNA 268 (313)
Q Consensus 249 ~~y~g~~~~~~l~~fi~~~~ 268 (313)
...+..-.+.|...+.+..
T Consensus 333 -~~~~~~~~eel~~~i~~~~ 351 (361)
T COG0821 333 -KLPEEDIVEELEALIEAYA 351 (361)
T ss_pred -ecChhhHHHHHHHHHHHHH
Confidence 5666666778888777764
No 485
>PRK10026 arsenate reductase; Provisional
Probab=21.03 E-value=90 Score=24.17 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=17.7
Q ss_pred EEEEeCCCCccchhhhHHHHHH
Q 021368 182 LLEIYAPWCGHCQAFEPTYNKL 203 (313)
Q Consensus 182 lv~fy~~~C~~C~~~~~~~~~l 203 (313)
+..|+.+.|..|+.....+.+-
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~ 25 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS 25 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 5578889999999988777654
Done!