Query 021371
Match_columns 313
No_of_seqs 214 out of 1247
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 02:26:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021371.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021371hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03193 beta-1,3-galactosyltr 100.0 1.4E-85 3E-90 638.5 29.8 313 1-313 1-324 (408)
2 KOG2288 Galactosyltransferases 100.0 1.3E-56 2.8E-61 409.8 16.3 186 125-313 8-194 (274)
3 PLN03133 beta-1,3-galactosyltr 100.0 1.4E-43 3E-48 361.9 20.1 177 124-310 381-558 (636)
4 KOG2287 Galactosyltransferases 100.0 1.9E-42 4E-47 335.4 19.4 177 127-312 94-273 (349)
5 PF01762 Galactosyl_T: Galacto 100.0 1.4E-41 3.1E-46 302.5 14.2 163 142-312 1-167 (195)
6 PTZ00210 UDP-GlcNAc-dependent 100.0 6.3E-30 1.4E-34 246.6 15.4 173 122-312 74-268 (382)
7 PF13334 DUF4094: Domain of un 100.0 6.6E-29 1.4E-33 199.1 7.4 86 17-103 1-95 (95)
8 PF02434 Fringe: Fringe-like; 99.5 2.1E-14 4.5E-19 133.8 10.0 155 128-309 6-164 (252)
9 KOG2246 Galactosyltransferases 99.2 6.4E-11 1.4E-15 115.9 10.8 139 124-309 87-231 (364)
10 PLN03153 hypothetical protein; 98.5 3.8E-07 8.3E-12 92.3 10.5 149 127-311 121-280 (537)
11 KOG3708 Uncharacterized conser 95.4 0.049 1.1E-06 55.7 7.6 89 200-312 69-161 (681)
12 PF00535 Glycos_transf_2: Glyc 93.6 1.8 3.8E-05 35.0 11.7 135 166-308 27-168 (169)
13 PF01755 Glyco_transf_25: Glyc 92.8 2.3 5.1E-05 37.3 12.0 93 132-241 4-101 (200)
14 TIGR03472 HpnI hopanoid biosyn 92.5 2.5 5.4E-05 41.3 12.9 81 166-251 70-152 (373)
15 PF13641 Glyco_tranf_2_3: Glyc 92.1 2.7 5.9E-05 36.9 11.6 132 167-308 31-174 (228)
16 cd04192 GT_2_like_e Subfamily 91.8 2.5 5.4E-05 36.7 10.9 134 167-308 29-170 (229)
17 cd06423 CESA_like CESA_like is 91.7 3.6 7.9E-05 33.0 11.1 94 216-309 69-170 (180)
18 TIGR03469 HonB hopene-associat 89.5 12 0.00027 36.6 14.6 82 167-251 71-159 (384)
19 cd04187 DPM1_like_bac Bacteria 89.2 4.5 9.8E-05 34.2 10.0 133 166-309 29-163 (181)
20 cd02525 Succinoglycan_BP_ExoA 88.0 16 0.00035 32.0 13.1 87 166-261 31-118 (249)
21 cd04179 DPM_DPG-synthase_like 85.8 7.1 0.00015 32.7 9.2 131 166-308 28-166 (185)
22 PF13506 Glyco_transf_21: Glyc 84.8 1.1 2.4E-05 39.4 3.7 92 210-308 16-116 (175)
23 cd02520 Glucosylceramide_synth 84.7 25 0.00055 30.3 15.0 80 166-250 30-111 (196)
24 PRK10714 undecaprenyl phosphat 84.4 25 0.00055 33.8 13.3 134 165-309 37-173 (325)
25 cd06532 Glyco_transf_25 Glycos 83.6 13 0.00028 30.7 9.6 95 133-241 3-98 (128)
26 cd06442 DPM1_like DPM1_like re 82.0 10 0.00023 32.9 8.9 84 225-309 78-167 (224)
27 cd04196 GT_2_like_d Subfamily 81.5 23 0.00051 30.2 10.8 150 145-309 11-168 (214)
28 cd02510 pp-GalNAc-T pp-GalNAc- 79.1 55 0.0012 30.4 14.3 39 217-255 75-113 (299)
29 PRK11204 N-glycosyltransferase 77.5 48 0.001 32.5 12.8 68 183-255 97-164 (420)
30 cd06438 EpsO_like EpsO protein 77.4 10 0.00022 32.4 7.1 89 215-307 70-169 (183)
31 cd04186 GT_2_like_c Subfamily 77.4 36 0.00078 27.4 12.3 28 224-251 73-100 (166)
32 cd06433 GT_2_WfgS_like WfgS an 77.4 9.2 0.0002 32.1 6.8 88 217-309 67-158 (202)
33 TIGR01556 rhamnosyltran L-rham 74.9 52 0.0011 30.2 11.6 57 193-251 43-99 (281)
34 cd06435 CESA_NdvC_like NdvC_li 74.3 42 0.00092 29.4 10.5 36 216-251 73-110 (236)
35 COG1216 Predicted glycosyltran 73.7 32 0.00068 32.5 10.0 63 194-258 55-117 (305)
36 cd06434 GT2_HAS Hyaluronan syn 71.7 39 0.00085 29.5 9.7 75 167-251 29-103 (235)
37 cd04184 GT2_RfbC_Mx_like Myxoc 70.3 66 0.0014 27.2 14.1 34 217-250 75-108 (202)
38 cd02526 GT2_RfbF_like RfbF is 68.4 63 0.0014 28.2 10.2 52 194-247 46-97 (237)
39 cd04188 DPG_synthase DPG_synth 66.6 73 0.0016 27.6 10.2 88 166-261 30-119 (211)
40 cd02514 GT13_GLCNAC-TI GT13_GL 64.0 18 0.0004 35.4 6.3 80 216-308 88-174 (334)
41 PF03071 GNT-I: GNT-I family; 63.2 1.3E+02 0.0029 30.6 12.4 92 212-311 174-272 (434)
42 cd06421 CESA_CelA_like CESA_Ce 62.3 52 0.0011 28.6 8.4 39 217-255 76-114 (234)
43 cd04185 GT_2_like_b Subfamily 61.3 1E+02 0.0022 26.2 11.0 38 213-251 68-105 (202)
44 PRK14583 hmsR N-glycosyltransf 61.2 1.8E+02 0.0039 29.0 15.0 82 166-255 104-185 (444)
45 COG1215 Glycosyltransferases, 59.4 1.4E+02 0.003 29.0 11.6 137 167-309 85-230 (439)
46 cd04195 GT2_AmsE_like GT2_AmsE 55.2 1.3E+02 0.0028 25.4 10.9 45 217-261 72-118 (201)
47 TIGR03111 glyc2_xrt_Gpos1 puta 54.6 2.3E+02 0.0051 28.2 13.2 40 216-255 122-161 (439)
48 PF13632 Glyco_trans_2_3: Glyc 52.7 21 0.00045 30.6 4.2 79 228-308 1-87 (193)
49 PF03452 Anp1: Anp1; InterPro 52.6 1.6E+02 0.0035 28.1 10.3 96 164-260 54-180 (269)
50 PHA01631 hypothetical protein 50.8 33 0.0007 30.6 5.0 62 224-309 70-131 (176)
51 PF10111 Glyco_tranf_2_2: Glyc 50.3 2E+02 0.0043 26.7 10.7 78 164-248 32-111 (281)
52 cd02522 GT_2_like_a GT_2_like_ 49.8 66 0.0014 27.7 6.9 43 217-260 64-106 (221)
53 cd06420 GT2_Chondriotin_Pol_N 47.8 59 0.0013 27.0 6.1 35 217-251 71-105 (182)
54 cd06437 CESA_CaSu_A2 Cellulose 46.3 2E+02 0.0044 25.1 11.9 34 217-250 79-112 (232)
55 cd04191 Glucan_BSP_ModH Glucan 44.8 2.6E+02 0.0056 25.9 10.4 62 194-255 63-125 (254)
56 PF06305 DUF1049: Protein of u 44.2 34 0.00074 24.9 3.6 18 20-37 19-36 (68)
57 cd06439 CESA_like_1 CESA_like_ 44.1 2.3E+02 0.0049 25.0 14.3 35 217-251 101-135 (251)
58 cd06913 beta3GnTL1_like Beta 1 42.0 2.3E+02 0.005 24.5 11.1 44 217-260 76-119 (219)
59 cd06427 CESA_like_2 CESA_like_ 40.9 2.6E+02 0.0056 24.8 12.4 36 216-251 75-110 (241)
60 PF00483 NTP_transferase: Nucl 36.0 1.3E+02 0.0029 26.7 6.8 77 227-309 104-191 (248)
61 PRK05454 glucosyltransferase M 34.4 4.2E+02 0.0092 28.6 11.3 126 125-255 121-250 (691)
62 PF06306 CgtA: Beta-1,4-N-acet 33.3 2.8E+02 0.006 27.5 8.7 68 183-250 127-200 (347)
63 PLN02726 dolichyl-phosphate be 33.3 3.5E+02 0.0076 24.1 13.7 87 166-260 40-129 (243)
64 COG4092 Predicted glycosyltran 31.8 2.1E+02 0.0045 27.9 7.4 81 163-248 35-117 (346)
65 PF06072 Herpes_US9: Alphaherp 31.0 43 0.00094 24.8 2.2 16 21-36 42-57 (60)
66 cd00761 Glyco_tranf_GTA_type G 30.2 2.5E+02 0.0054 21.4 9.2 34 217-250 69-102 (156)
67 PF04508 Pox_A_type_inc: Viral 27.7 69 0.0015 19.3 2.3 19 83-101 3-21 (23)
68 PF04666 Glyco_transf_54: N-Ac 27.3 3.2E+02 0.0069 26.4 8.1 22 224-245 168-189 (297)
69 cd04190 Chitin_synth_C C-termi 24.9 99 0.0021 27.9 4.0 33 223-255 71-103 (244)
70 smart00786 SHR3_chaperone ER m 24.7 44 0.00095 30.5 1.6 29 17-45 6-40 (196)
71 PF08229 SHR3_chaperone: ER me 24.3 31 0.00067 31.5 0.6 33 16-48 5-43 (196)
72 PF07507 WavE: WavE lipopolysa 23.9 1.3E+02 0.0027 29.4 4.7 64 212-283 86-161 (311)
73 PF03742 PetN: PetN ; InterPr 23.6 77 0.0017 20.2 2.1 23 16-38 4-26 (29)
74 PF09964 DUF2198: Uncharacteri 22.6 53 0.0011 25.4 1.4 22 18-39 46-67 (74)
75 PRK10018 putative glycosyl tra 21.7 6.7E+02 0.015 23.5 11.2 34 217-250 77-110 (279)
76 PF09258 Glyco_transf_64: Glyc 21.1 1.4E+02 0.0031 27.7 4.3 38 224-261 74-111 (247)
77 PF11772 EpuA: DNA-directed RN 20.6 81 0.0017 22.2 1.9 16 21-36 4-19 (47)
No 1
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=1.4e-85 Score=638.52 Aligned_cols=313 Identities=67% Similarity=1.092 Sum_probs=286.0
Q ss_pred CCccccCCCcccCCCcchhHHHHHHHHHHhhHhhhccccCCCCcccchhccccc--------ccccchhh---hhccccc
Q 021371 1 MSFKSTGGEFASRNLIPRKWALFLCACSFCAGMSFTNRMWMMPESKGVARISKT--------EEIENPEL---KAVKHES 69 (313)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~---~~~~~~~ 69 (313)
||.|+||+++++++.||+||+++||++|||+|++||+|||..||+++..+.+.+ .+||++|+ |..++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 80 (408)
T PLN03193 1 MSTKSRGEEYSSRSVVSRKWTLLLCLGCFCAGMLFTDRMWTIPESKGISRTTVTEAERLKLVSEGCDPKTLYQKEVKRDS 80 (408)
T ss_pred CCcccccccccccccccHHHHHHHHHHHHHHHHhhccccccCCccccccccccchhhhhhhhccccccccccccccccch
Confidence 899999999999999999999999999999999999999999998887654432 37999876 5566799
Q ss_pred chhhHhHHHHHHHHHHHHHhHHHHhhhHHHhhhccccccCCCCCCCCcccCCCCCCCceeEEEEEeCCCCCHHHHHHHHH
Q 021371 70 NNNTEKLAMVEQAIQSQDKRLDGLKTKITAVRAERDSVSLSHPVKGTSNISGSMLKRKYFMVIGINTAFSSRKRRDSVRA 149 (313)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~le~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvI~V~S~~~~~~rR~aIR~ 149 (313)
+|||+||++||+|||+|||+|+.||||||+|++.+..+.++.|.+++....+...++++++||+|+|+|++++||++||+
T Consensus 81 ~~~~~~~~~t~~~~~~~~~~~~~le~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvIgI~Sap~~~~RR~AIR~ 160 (408)
T PLN03193 81 KDIIGEVSKTHNAIQTLDKTISNLEMELAAARAAQESILNGSPISEDLKKTQSSGKRRYLMVVGINTAFSSRKRRDSVRA 160 (408)
T ss_pred hHHHHHHhhHHHHHHHHhhhhhHHhHHHHHHHhhhhhhccCCCccccccccCCCCcceEEEEEEEeCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999977766776666543333345567889999999999999999999999
Q ss_pred HhhhcchhhhhhhccCCeEEEEEcccCCCCCCchHHHHHHHHhhcCCEEEeeccccCcchhHHHHHHHHHHhhcCCceEE
Q 021371 150 TWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFY 229 (313)
Q Consensus 150 TW~~~~~~~~~l~~~~~i~v~FViG~s~~~~~~~~~~I~~E~~~~gDIL~ld~~DsY~nLt~Kt~~~f~wa~~~~~a~f~ 229 (313)
|||++++.+.+++.+.+++++||||++.++++.++++|++|+++|||||++||+|+|.|||.||+++|+||..+++++||
T Consensus 161 TWg~~~~~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~ 240 (408)
T PLN03193 161 TWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFATAVAMWDADFY 240 (408)
T ss_pred HHcCCcccccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEecccccccchHHHHHHHHHHHHcCCCeEE
Confidence 99999877777877899999999999987667899999999999999999999999999999999999999999999999
Q ss_pred EEeccceEEeHHHHHHHHhccCCCCceEEEEecCCcccccCCCccccCcccccCCCCCCCCcCcccceeeeCHHHHHHHH
Q 021371 230 IKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYIS 309 (313)
Q Consensus 230 vKvDDDv~Vnl~~L~~~L~~~~~~~~vY~G~~~~~pV~rd~~~Kw~~pe~~~fg~~~~~YP~y~~G~~YiiS~dla~~I~ 309 (313)
+|+|||+|||+++|+.+|+.++.++++|+|||+++||+.+++.+||+|++|+||++++.|||||+|++||||+|+|++|+
T Consensus 241 mK~DDDvfVnv~~L~~~L~~~~~~~rlYiG~m~~gPvr~~~~~ky~epe~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~ 320 (408)
T PLN03193 241 VKVDDDVHVNIATLGETLVRHRKKPRVYIGCMKSGPVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAISKDLASYIS 320 (408)
T ss_pred EEcCCCceEcHHHHHHHHHhcCCCCCEEEEecccCccccCCCCcCcCcccccccCccccCCCCCCcceEEehHHHHHHHH
Confidence 99999999999999999998888889999999999998778899999999999988999999999999999999999999
Q ss_pred hcCC
Q 021371 310 INQL 313 (313)
Q Consensus 310 ~n~~ 313 (313)
+|++
T Consensus 321 ~n~~ 324 (408)
T PLN03193 321 INQH 324 (408)
T ss_pred hChh
Confidence 9874
No 2
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-56 Score=409.76 Aligned_cols=186 Identities=69% Similarity=1.122 Sum_probs=180.4
Q ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHhhhcchhhhhhhccCCeEEEEEcccCCCCCCchHHHHHHHHhhcCCEEEee-cc
Q 021371 125 KRKYFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLE-HI 203 (313)
Q Consensus 125 ~~~~~lvI~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~i~v~FViG~s~~~~~~~~~~I~~E~~~~gDIL~ld-~~ 203 (313)
++++++||+|.|+|++.+||+++|+|||++++.++++++++||.+|||||+ ++.+++++++|++|+++|+|+|++| |+
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~-~~~g~~~~r~ie~E~~~~~DfllLd~h~ 86 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGT-ATLGASLDRALEEENAQHGDFLLLDRHE 86 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEecc-CCccHHHHHHHHHHHHhcCCeEeechhH
Confidence 778999999999999999999999999999999999999999999999999 4567899999999999999999999 99
Q ss_pred ccCcchhHHHHHHHHHHhhcCCceEEEEeccceEEeHHHHHHHHhccCCCCceEEEEecCCcccccCCCccccCcccccC
Q 021371 204 EGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEPEYWKFG 283 (313)
Q Consensus 204 DsY~nLt~Kt~~~f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~~L~~~~~~~~vY~G~~~~~pV~rd~~~Kw~~pe~~~fg 283 (313)
|+|++|+.||+++|.+|...|+++||+|+|||+|||++.|...|++++.+|++|+|||++|||+.++++|||+|+ |+||
T Consensus 87 E~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~Epe-Wkfg 165 (274)
T KOG2288|consen 87 EAYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPE-WKFG 165 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChh-hhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCCCCCCcCcccceeeeCHHHHHHHHhcCC
Q 021371 284 EIGNKYFRHATGQLYALSKDLATYISINQL 313 (313)
Q Consensus 284 ~~~~~YP~y~~G~~YiiS~dla~~I~~n~~ 313 (313)
+.++ |+||+.|++|+||++||++|++|++
T Consensus 166 ~~g~-YfrhA~G~~YvlS~dLa~yi~in~~ 194 (274)
T KOG2288|consen 166 DNGN-YFRHATGGGYVLSKDLATYISINRQ 194 (274)
T ss_pred cccc-cchhccCceEEeeHHHHHHHHHhHH
Confidence 8777 9999999999999999999999973
No 3
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=1.4e-43 Score=361.88 Aligned_cols=177 Identities=21% Similarity=0.299 Sum_probs=159.6
Q ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHhhhcchhhhhhhccCCeEEEEEcccCCCCCCchHHHHHHHHhhcCCEEEeecc
Q 021371 124 LKRKYFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHI 203 (313)
Q Consensus 124 ~~~~~~lvI~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~i~v~FViG~s~~~~~~~~~~I~~E~~~~gDIL~ld~~ 203 (313)
+.++++|||+|+|+|+|++||++||+|||+... .....+.++|++|.+.+ +.++..|++|+++|||||++||+
T Consensus 381 ~~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~-----~~~~~v~~rFvVG~s~n--~~l~~~L~~Ea~~ygDIIq~dF~ 453 (636)
T PLN03133 381 PKKPLDLFIGVFSTANNFKRRMAVRRTWMQYDA-----VRSGAVAVRFFVGLHKN--QMVNEELWNEARTYGDIQLMPFV 453 (636)
T ss_pred CCCceEEEEEEeCCcccHHHHHHHHHhhccccc-----cCCCceEEEEEEecCCc--HHHHHHHHHHHHHcCCeEEEeee
Confidence 356799999999999999999999999998642 12456899999999863 57899999999999999999999
Q ss_pred ccCcchhHHHHHHHHHHhhcCCceEEEEeccceEEeHHHHHHHHhccCCCCceEEEEec-CCcccccCCCccccCccccc
Q 021371 204 EGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMK-SGPVLARKGVKYYEPEYWKF 282 (313)
Q Consensus 204 DsY~nLt~Kt~~~f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~~L~~~~~~~~vY~G~~~-~~pV~rd~~~Kw~~pe~~~f 282 (313)
|+|+|||+||++++.|+..|++++|++|+|||+|||+++|+.+|.......++|+|++. ...|+|++.+|||+|...|
T Consensus 454 DsY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~ey- 532 (636)
T PLN03133 454 DYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPEEW- 532 (636)
T ss_pred chhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHHHC-
Confidence 99999999999999999899999999999999999999999999887767789999986 4567799999999997655
Q ss_pred CCCCCCCCcCcccceeeeCHHHHHHHHh
Q 021371 283 GEIGNKYFRHATGQLYALSKDLATYISI 310 (313)
Q Consensus 283 g~~~~~YP~y~~G~~YiiS~dla~~I~~ 310 (313)
|++.|||||+|++|+||+|+|++|+.
T Consensus 533 --p~~~YPpYasG~gYVlS~Dla~~L~~ 558 (636)
T PLN03133 533 --PEETYPPWAHGPGYVVSRDIAKEVYK 558 (636)
T ss_pred --CCCCCCCCCCcCEEEEcHHHHHHHHH
Confidence 78999999999999999999999965
No 4
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-42 Score=335.37 Aligned_cols=177 Identities=26% Similarity=0.375 Sum_probs=162.6
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHHhhhcchhhhhhhccCCeEEEEEcccCCCCCCchHHHHHHHHhhcCCEEEeeccccC
Q 021371 127 KYFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGY 206 (313)
Q Consensus 127 ~~~lvI~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~i~v~FViG~s~~~~~~~~~~I~~E~~~~gDIL~ld~~DsY 206 (313)
.++++|+|.|++++++||++||+|||+... ..+..++++|++|.+++.+ .++..+.+|++.|||||+.||.|+|
T Consensus 94 ~~~lLl~V~S~~~~farR~aiR~TW~~~~~-----v~~~~v~~~FLvG~~~~~~-~~~~~l~~Ea~~ygDIi~~df~Dty 167 (349)
T KOG2287|consen 94 PPELLLLVKSAPDNFARRNAIRKTWGNENN-----VRGGRVRVLFLVGLPSNED-KLNKLLADEARLYGDIIQVDFEDTY 167 (349)
T ss_pred CceEEEEEecCCCCHHHHHHHHHHhcCccc-----cCCCcEEEEEEecCCCcHH-HHHHHHHHHHHHhCCEEEEecccch
Confidence 489999999999999999999999999864 3356799999999988543 5689999999999999999999999
Q ss_pred cchhHHHHHHHHHHhh-cCCceEEEEeccceEEeHHHHHHHHhcc-CCCCceEEEEec-CCcccccCCCccccCcccccC
Q 021371 207 LELSAKTKTYFATAVS-MWDAEFYIKVDDDVHVNLATLGMTLAAH-RTKPRVYVGCMK-SGPVLARKGVKYYEPEYWKFG 283 (313)
Q Consensus 207 ~nLt~Kt~~~f~wa~~-~~~a~f~vKvDDDv~Vnl~~L~~~L~~~-~~~~~vY~G~~~-~~pV~rd~~~Kw~~pe~~~fg 283 (313)
.|||+|+++++.|+.. |++++|++|+|||||||+++|..+|..+ .+.+++|.|.+. ..+++|++.+|||+|+..|
T Consensus 168 ~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~~~y-- 245 (349)
T KOG2287|consen 168 FNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPESEY-- 245 (349)
T ss_pred hchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCHHHC--
Confidence 9999999999999986 9999999999999999999999999999 788899999975 5688899999999998765
Q ss_pred CCCCCCCcCcccceeeeCHHHHHHHHhcC
Q 021371 284 EIGNKYFRHATGQLYALSKDLATYISINQ 312 (313)
Q Consensus 284 ~~~~~YP~y~~G~~YiiS~dla~~I~~n~ 312 (313)
|.+.||+||+|++|+||+++|+.|.+++
T Consensus 246 -~~~~YP~Y~sG~gYvis~~~a~~l~~~s 273 (349)
T KOG2287|consen 246 -PCSVYPPYASGPGYVISGDAARRLLKAS 273 (349)
T ss_pred -CCCCCCCcCCCceeEecHHHHHHHHHHh
Confidence 8889999999999999999999998864
No 5
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=1.4e-41 Score=302.52 Aligned_cols=163 Identities=31% Similarity=0.439 Sum_probs=145.8
Q ss_pred HHHHHHHHHhhhcchhhhhhhccCCeEEEEEcccCCCCCCchHHHHHHHHhhcCCEEEeeccccCcchhHHHHHHHHHHh
Q 021371 142 KRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAV 221 (313)
Q Consensus 142 ~rR~aIR~TW~~~~~~~~~l~~~~~i~v~FViG~s~~~~~~~~~~I~~E~~~~gDIL~ld~~DsY~nLt~Kt~~~f~wa~ 221 (313)
+||++||+||++.... ...++.++||+|.+.+.+..++..|.+|+++|+|||++||.|+|+|||+||+++|+|+.
T Consensus 1 ~rR~~IR~TW~~~~~~-----~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~ 75 (195)
T PF01762_consen 1 ERRQAIRETWGNQRNF-----KGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWAS 75 (195)
T ss_pred ChHHHHHHHHhccccc-----CCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHH
Confidence 5899999999998642 25789999999999855567888899999999999999999999999999999999998
Q ss_pred h-cCCceEEEEeccceEEeHHHHHHHHhcc--C-CCCceEEEEecCCcccccCCCccccCcccccCCCCCCCCcCcccce
Q 021371 222 S-MWDAEFYIKVDDDVHVNLATLGMTLAAH--R-TKPRVYVGCMKSGPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQL 297 (313)
Q Consensus 222 ~-~~~a~f~vKvDDDv~Vnl~~L~~~L~~~--~-~~~~vY~G~~~~~pV~rd~~~Kw~~pe~~~fg~~~~~YP~y~~G~~ 297 (313)
. |++++|++|+|||+|||+++|..+|... . ....+|++++..+++.|++.+|||+|+..+ +.+.|||||+|++
T Consensus 76 ~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y---~~~~yP~y~~G~~ 152 (195)
T PF01762_consen 76 KHCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEEY---PDDYYPPYCSGGG 152 (195)
T ss_pred hhCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeeeec---ccccCCCcCCCCe
Confidence 5 8889999999999999999999999998 2 344566777888889999999999998765 7889999999999
Q ss_pred eeeCHHHHHHHHhcC
Q 021371 298 YALSKDLATYISINQ 312 (313)
Q Consensus 298 YiiS~dla~~I~~n~ 312 (313)
|+||+++|+.|+.+.
T Consensus 153 yvls~~~v~~i~~~~ 167 (195)
T PF01762_consen 153 YVLSSDVVKRIYKAS 167 (195)
T ss_pred EEecHHHHHHHHHHh
Confidence 999999999998764
No 6
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=99.97 E-value=6.3e-30 Score=246.56 Aligned_cols=173 Identities=18% Similarity=0.286 Sum_probs=144.4
Q ss_pred CCCCCceeEEEEEeCCCCC--HHHHHHHHHHhhhcchhhhhhhccC-CeEEEEEcccCCCCCCchHHHHHHHHhhcCCEE
Q 021371 122 SMLKRKYFMVIGINTAFSS--RKRRDSVRATWMPQGEKRKMLEEAK-GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFL 198 (313)
Q Consensus 122 ~~~~~~~~lvI~V~S~~~~--~~rR~aIR~TW~~~~~~~~~l~~~~-~i~v~FViG~s~~~~~~~~~~I~~E~~~~gDIL 198 (313)
...+++.++++||.|...+ +.||++.|+||++-....++-.+.. .+.++|++|.+++.+-.++.++.+|+++|+|||
T Consensus 74 ~w~~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIV 153 (382)
T PTZ00210 74 VWKAQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDII 153 (382)
T ss_pred HhccCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEE
Confidence 3557789999999999988 8999999999998765433322223 367899999999877799999999999999999
Q ss_pred Eeec------------------cccCcchhHHHHHHHHHHhh-cCCceEEEEeccceEEeHHHHHHHHhccCCCCceEEE
Q 021371 199 RLEH------------------IEGYLELSAKTKTYFATAVS-MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVG 259 (313)
Q Consensus 199 ~ld~------------------~DsY~nLt~Kt~~~f~wa~~-~~~a~f~vKvDDDv~Vnl~~L~~~L~~~~~~~~vY~G 259 (313)
++|| .|+|.++|+||+++|+||.. |++++|++|.|||+|||++.+++.|+.. +...+|+|
T Consensus 154 ilpf~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~-prr~LY~G 232 (382)
T PTZ00210 154 TLPTNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVM-PRHGLYMG 232 (382)
T ss_pred EEecccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhC-CCCceEEE
Confidence 9999 77788899999999999986 8999999999999999999999999664 45569999
Q ss_pred EecCCcccccCCCccccCcccccCCCCCCCCcCcccceeeeCHHHHHHHHhcC
Q 021371 260 CMKSGPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQ 312 (313)
Q Consensus 260 ~~~~~pV~rd~~~Kw~~pe~~~fg~~~~~YP~y~~G~~YiiS~dla~~I~~n~ 312 (313)
.+... ++ | + .+.+||||+|++|+||+|+|+.|+...
T Consensus 233 ~v~~~-------~~---p--~-----Rd~~PpY~~G~gYvLSrDVA~~Lvs~~ 268 (382)
T PTZ00210 233 RYNYY-------NR---I--W-----RRNQLTYVNGYCITLSRDTAQAIISYK 268 (382)
T ss_pred eeCCC-------Cc---c--c-----cCCCCCccccceeeccHHHHHHHHhhC
Confidence 86421 00 1 0 124799999999999999999998754
No 7
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=99.95 E-value=6.6e-29 Score=199.10 Aligned_cols=86 Identities=43% Similarity=0.742 Sum_probs=74.9
Q ss_pred chhHHHHHHHHHHhhHhhhccccCCCCcccchhcccc---------cccccchhhhhcccccchhhHhHHHHHHHHHHHH
Q 021371 17 PRKWALFLCACSFCAGMSFTNRMWMMPESKGVARISK---------TEEIENPELKAVKHESNNNTEKLAMVEQAIQSQD 87 (313)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (313)
|+||+++||++|||+|+|||||||..||+++...... ..++|++++ ..+.+++++|+||+|||+|||+||
T Consensus 1 S~kw~l~Lc~~SF~~G~lft~R~W~~pe~~~~~~~~~~~~~~~l~l~s~~c~~k~-~~~~~~~di~~eV~kTh~aIq~Ld 79 (95)
T PF13334_consen 1 SRKWVLLLCIASFCAGMLFTNRMWTVPESKEISRRSSQDAEERLQLVSEDCDPKK-LKESDQRDIMGEVSKTHEAIQSLD 79 (95)
T ss_pred CchHHHHHHHHHHHHHHHHhcccccCCccccchhhhccccccccccccccccccc-cccCCccchhHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999877664322 137998765 335689999999999999999999
Q ss_pred HhHHHHhhhHHHhhhc
Q 021371 88 KRLDGLKTKITAVRAE 103 (313)
Q Consensus 88 ~~~~~le~el~~~~~~ 103 (313)
|+|++||||||+||++
T Consensus 80 KtIS~LEMELAaARa~ 95 (95)
T PF13334_consen 80 KTISSLEMELAAARAE 95 (95)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999999973
No 8
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.54 E-value=2.1e-14 Score=133.85 Aligned_cols=155 Identities=20% Similarity=0.268 Sum_probs=80.9
Q ss_pred eeEEEEEeCCCCCHHHH-HHHHHHhhhcchhhhhhhccCCeEEEEEcccCCCCCCchHHHHHHHHhhcCCEEEeeccccC
Q 021371 128 YFMVIGINTAFSSRKRR-DSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGY 206 (313)
Q Consensus 128 ~~lvI~V~S~~~~~~rR-~aIR~TW~~~~~~~~~l~~~~~i~v~FViG~s~~~~~~~~~~I~~E~~~~gDIL~ld~~DsY 206 (313)
-.++|+|+|++.+.+.| .+|++||++.... . .|+... ..+..+..+ ...+++..+...++
T Consensus 6 ~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~~---------~--~~ifsd------~~d~~l~~~--~~~~l~~~~~~~~~ 66 (252)
T PF02434_consen 6 DDIFIAVKTTKKFHKTRAPAIKQTWAKRCNK---------Q--TFIFSD------AEDPSLPTV--TGVHLVNPNCDAGH 66 (252)
T ss_dssp GGEEEEEE--GGGTTTTHHHHHHTGGGGSGG---------G--EEEEES------S--HHHHHH--HGGGEEE-------
T ss_pred ccEEEEEEeCHHHHHHHHHHHHHHHHhhcCC---------c--eEEecC------ccccccccc--cccccccCCCcchh
Confidence 35789999999887666 7999999998642 1 243221 123344433 23455555555555
Q ss_pred cchhHHHHHHHHHHhh-cCCceEEEEeccceEEeHHHHHHHHhccCCCCceEEEEecC-CcccccCCCccccCcccccCC
Q 021371 207 LELSAKTKTYFATAVS-MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKS-GPVLARKGVKYYEPEYWKFGE 284 (313)
Q Consensus 207 ~nLt~Kt~~~f~wa~~-~~~a~f~vKvDDDv~Vnl~~L~~~L~~~~~~~~vY~G~~~~-~pV~rd~~~Kw~~pe~~~fg~ 284 (313)
....++.++.+.+... .++++|++++|||+||++++|..+|..+++...+|+|+... .+... ..+ +.+..
T Consensus 67 ~~~~~~~~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~--~~~-~~~~~----- 138 (252)
T PF02434_consen 67 CRKTLSCKMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEI--IHR-FNPNK----- 138 (252)
T ss_dssp ------HHHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE-----------------------
T ss_pred hHHHHHHHHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCcccee--ecc-ccccc-----
Confidence 5445555554444332 36889999999999999999999999999999999998642 33311 000 00000
Q ss_pred CCCCCCcCc-ccceeeeCHHHHHHHH
Q 021371 285 IGNKYFRHA-TGQLYALSKDLATYIS 309 (313)
Q Consensus 285 ~~~~YP~y~-~G~~YiiS~dla~~I~ 309 (313)
....-+.|+ +|+||+||+.+++.|+
T Consensus 139 ~~~~~~~f~~GGaG~vlSr~~~~k~~ 164 (252)
T PF02434_consen 139 SKDSGFWFATGGAGYVLSRALLKKMS 164 (252)
T ss_dssp -------EE-GGG-EEEEHHHHHHHH
T ss_pred cCcCceEeeCCCeeHHHhHHHHHHHh
Confidence 112334566 4689999999999993
No 9
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.21 E-value=6.4e-11 Score=115.92 Aligned_cols=139 Identities=24% Similarity=0.315 Sum_probs=104.8
Q ss_pred CCCceeEEEEEeCCCCCHHHH-HHHHHHhhhcchhhhhhhccCCeEEEEEc---ccCCCCCCchHHHHHHHHhhcCCEEE
Q 021371 124 LKRKYFMVIGINTAFSSRKRR-DSVRATWMPQGEKRKMLEEAKGIIIRFVI---GHSATSGGILDKAIDAEEKMHGDFLR 199 (313)
Q Consensus 124 ~~~~~~lvI~V~S~~~~~~rR-~aIR~TW~~~~~~~~~l~~~~~i~v~FVi---G~s~~~~~~~~~~I~~E~~~~gDIL~ 199 (313)
-.++..+++.|.|++.+..-| +.+-+||++..+ + ..|+- .... ..+ ..|.
T Consensus 87 l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~--------~---~~f~s~~~s~~~--------------~~f-~~v~ 140 (364)
T KOG2246|consen 87 LSRSGRVLCWVLTSPMRHVTRADAVKETWLKRCD--------K---GIFFSPTLSKDD--------------SRF-PTVY 140 (364)
T ss_pred cCCCceEEEEEEecCcCceeehhhhhcccccccC--------c---ceecCccCCCCC--------------CcC-ceee
Confidence 366789999999999988777 599999998764 2 12333 2221 112 2336
Q ss_pred eeccccCcchhHHHHHHHHHHh-h-cCCceEEEEeccceEEeHHHHHHHHhccCCCCceEEEEecCCcccccCCCccccC
Q 021371 200 LEHIEGYLELSAKTKTYFATAV-S-MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEP 277 (313)
Q Consensus 200 ld~~DsY~nLt~Kt~~~f~wa~-~-~~~a~f~vKvDDDv~Vnl~~L~~~L~~~~~~~~vY~G~~~~~pV~rd~~~Kw~~p 277 (313)
++..|+|+++..||..+|++.. + ..+++|++|+|||||+.+++|..+|..+++++.+|+|+... + |.
T Consensus 141 ~~~~~g~~~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~-~---------~~- 209 (364)
T KOG2246|consen 141 YNLPDGYRSLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSK-S---------YF- 209 (364)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEeccccc-c---------cc-
Confidence 8899999999999999999987 3 58999999999999999999999999999999999998521 1 11
Q ss_pred cccccCCCCCCCCcCcccceeeeCHHHHHHHH
Q 021371 278 EYWKFGEIGNKYFRHATGQLYALSKDLATYIS 309 (313)
Q Consensus 278 e~~~fg~~~~~YP~y~~G~~YiiS~dla~~I~ 309 (313)
.+.|- ..|++|++|+++.+.++
T Consensus 210 --------~~~y~--~g~ag~~ls~aa~~~la 231 (364)
T KOG2246|consen 210 --------QNGYS--SGGAGYVLSFAALRRLA 231 (364)
T ss_pred --------ccccc--cCCCCcceeHHHHHHHH
Confidence 11110 25788888887766654
No 10
>PLN03153 hypothetical protein; Provisional
Probab=98.55 E-value=3.8e-07 Score=92.27 Aligned_cols=149 Identities=19% Similarity=0.186 Sum_probs=88.0
Q ss_pred ceeEEEEEeCCCCCH-HHHHHHHHHhhhcchhhhhhhccCCeEEEEEcccCCCCCCchHHHHHHHHhhcCCEEEe-e---
Q 021371 127 KYFMVIGINTAFSSR-KRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRL-E--- 201 (313)
Q Consensus 127 ~~~lvI~V~S~~~~~-~rR~aIR~TW~~~~~~~~~l~~~~~i~v~FViG~s~~~~~~~~~~I~~E~~~~gDIL~l-d--- 201 (313)
--.++++|.+..... +|+..|+.+|.+..- .| .+|+.....+. ..+.. ---|.+. |
T Consensus 121 ~~hIvF~I~~s~~~w~~R~~yik~wW~p~~~--------rg--~v~ld~~~~~~--~~~~~-------~P~i~is~d~s~ 181 (537)
T PLN03153 121 LNHIMFGIAGSSQLWKRRKELVRLWWRPNQM--------RG--HVWLEEQVSPE--EGDDS-------LPPIMVSEDTSR 181 (537)
T ss_pred cccEEEEEEEchhhhhhhhhhhhhhcCcccc--------ee--EEEecccCCCC--CCcCC-------CCCEEeCCCccc
Confidence 356889999988877 455899999987421 11 23443322110 00000 0001110 0
Q ss_pred cc-ccCcchhHHHHH--HHHHHhh--cCCceEEEEeccceEEeHHHHHHHHhccCCCCceEEEEecCCcccccCCCcccc
Q 021371 202 HI-EGYLELSAKTKT--YFATAVS--MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYE 276 (313)
Q Consensus 202 ~~-DsY~nLt~Kt~~--~f~wa~~--~~~a~f~vKvDDDv~Vnl~~L~~~L~~~~~~~~vY~G~~~~~pV~rd~~~Kw~~ 276 (313)
|. +...+......+ +...+.. .++++||+++|||+|+.+++|+.+|..++++...|+|..... .
T Consensus 182 f~y~~~~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~-~---------- 250 (537)
T PLN03153 182 FRYTNPTGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSES-H---------- 250 (537)
T ss_pred ccccCCCCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEecccccc-c----------
Confidence 11 111222222211 3333333 589999999999999999999999999999999999975210 0
Q ss_pred CcccccCCCCCCCCcCc-ccceeeeCHHHHHHHHhc
Q 021371 277 PEYWKFGEIGNKYFRHA-TGQLYALSKDLATYISIN 311 (313)
Q Consensus 277 pe~~~fg~~~~~YP~y~-~G~~YiiS~dla~~I~~n 311 (313)
+....|+ | -|+ +|+||+||+.+++.|..+
T Consensus 251 ~qn~~f~-----~-~fA~GGAG~~LSrPLae~L~~~ 280 (537)
T PLN03153 251 SANSYFS-----H-NMAFGGGGIAISYPLAEALSRI 280 (537)
T ss_pred ccccccc-----c-ccccCCceEEEcHHHHHHHHHH
Confidence 0000111 1 133 799999999999998764
No 11
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.40 E-value=0.049 Score=55.67 Aligned_cols=89 Identities=17% Similarity=0.169 Sum_probs=63.8
Q ss_pred eeccccCcchhHHHHH-HHHHHhh--cCCceEEEEeccceEEeHHHHHHHHhccCCCCceEEEEecCCcccccCCCcccc
Q 021371 200 LEHIEGYLELSAKTKT-YFATAVS--MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYE 276 (313)
Q Consensus 200 ld~~DsY~nLt~Kt~~-~f~wa~~--~~~a~f~vKvDDDv~Vnl~~L~~~L~~~~~~~~vY~G~~~~~pV~rd~~~Kw~~ 276 (313)
+..+-.|..-..|+.. .+.+..+ ..++||++-+-|++|||...|+.++....-+.++|+|.
T Consensus 69 ~~~vs~~d~r~~~~~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGE---------------- 132 (681)
T KOG3708|consen 69 LTNVSPYDLRGQKTHSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGE---------------- 132 (681)
T ss_pred ccccCccccCccccHHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccch----------------
Confidence 3444445444555543 3444443 47999999999999999999999999998888999991
Q ss_pred CcccccCCCCCCCCcCc-ccceeeeCHHHHHHHHhcC
Q 021371 277 PEYWKFGEIGNKYFRHA-TGQLYALSKDLATYISINQ 312 (313)
Q Consensus 277 pe~~~fg~~~~~YP~y~-~G~~YiiS~dla~~I~~n~ 312 (313)
..- +.++ . | .|.||++|+.+...+-.|.
T Consensus 133 --e~~-~gs~-r----C~l~~G~LLS~s~l~~lrnnl 161 (681)
T KOG3708|consen 133 --EAE-DGSG-R----CRLDTGMLLSQSLLHALRNNL 161 (681)
T ss_pred --hhh-CccC-c----cccccceeecHHHHHHHHhhH
Confidence 110 0011 1 6 4789999999999998774
No 12
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=93.60 E-value=1.8 Score=35.00 Aligned_cols=135 Identities=15% Similarity=0.113 Sum_probs=66.2
Q ss_pred CeEEEEEcccCCCCCCchHHHHHHHHhhcCCEEEeeccccCcchhHHHHHHHHHHhhcCCceEEEEeccceEEeHHHHHH
Q 021371 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGM 245 (313)
Q Consensus 166 ~i~v~FViG~s~~~~~~~~~~I~~E~~~~gDIL~ld~~DsY~nLt~Kt~~~f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~ 245 (313)
.+.+.+|-..+. +.....+.+-.+....+..+...+.. .+..-...+++. ...+|++.+|||.++.++.|..
T Consensus 27 ~~eiivvdd~s~---d~~~~~~~~~~~~~~~i~~i~~~~n~-g~~~~~n~~~~~----a~~~~i~~ld~D~~~~~~~l~~ 98 (169)
T PF00535_consen 27 DFEIIVVDDGST---DETEEILEEYAESDPNIRYIRNPENL-GFSAARNRGIKH----AKGEYILFLDDDDIISPDWLEE 98 (169)
T ss_dssp EEEEEEEECS-S---SSHHHHHHHHHCCSTTEEEEEHCCCS-HHHHHHHHHHHH------SSEEEEEETTEEE-TTHHHH
T ss_pred CEEEEEeccccc---cccccccccccccccccccccccccc-cccccccccccc----cceeEEEEeCCCceEcHHHHHH
Confidence 345555554442 23344443333324456656655544 333333333333 3455999999999999887777
Q ss_pred HHhccCC-CCceEEEEec--CCcc-cccCCC---ccccCcccccCCCCCCCCcCcccceeeeCHHHHHHH
Q 021371 246 TLAAHRT-KPRVYVGCMK--SGPV-LARKGV---KYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYI 308 (313)
Q Consensus 246 ~L~~~~~-~~~vY~G~~~--~~pV-~rd~~~---Kw~~pe~~~fg~~~~~YP~y~~G~~YiiS~dla~~I 308 (313)
++..... ...+.+|... .... ...... .+..+....+......-..++.|++.++++++.+.+
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 99 LVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVFEEI 168 (169)
T ss_dssp HHHHHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHHHHC
T ss_pred HHHHHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHHHhh
Confidence 6666544 3445555532 1111 000110 111111111101122334567899999999988765
No 13
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=92.77 E-value=2.3 Score=37.29 Aligned_cols=93 Identities=17% Similarity=0.152 Sum_probs=49.1
Q ss_pred EEEeCCCCCHHHHHHHHHHhhhcchhhhhhhccCCeEEEEEcccCCCCCCchHHHHHHHHhhcCCEEEee-----ccccC
Q 021371 132 IGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLE-----HIEGY 206 (313)
Q Consensus 132 I~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~i~v~FViG~s~~~~~~~~~~I~~E~~~~gDIL~ld-----~~DsY 206 (313)
|.|.|-+.+.+||+.+.+..... ++.+.|+=|-.... ++. .+....++.-.... ..-+.
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~-----------~~~~e~~~Avdg~~---l~~--~~~~~~~~~~~~~~~~~~~lt~gE 67 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKL-----------GINFEFFDAVDGRD---LSE--DELFRRYDPELFKKRYGRPLTPGE 67 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc-----------CCceEEEEeecccc---cch--HHHHHHhhhhhhhccccccCCcce
Confidence 34566778889999997776543 45566776654421 111 11111121111110 11111
Q ss_pred cchhHHHHHHHHHHhhcCCceEEEEeccceEEeHH
Q 021371 207 LELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLA 241 (313)
Q Consensus 207 ~nLt~Kt~~~f~wa~~~~~a~f~vKvDDDv~Vnl~ 241 (313)
-.=.+-.+..++.+++ .+.++.+-.-||++++.+
T Consensus 68 iGC~lSH~~~w~~~v~-~~~~~~lIlEDDv~~~~~ 101 (200)
T PF01755_consen 68 IGCALSHIKAWQRIVD-SGLEYALILEDDVIFDPD 101 (200)
T ss_pred EeehhhHHHHHHHHHH-cCCCeEEEEecccccccc
Confidence 1113334445555554 367899999999999865
No 14
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=92.49 E-value=2.5 Score=41.26 Aligned_cols=81 Identities=11% Similarity=0.032 Sum_probs=47.9
Q ss_pred CeEEEEEcccCCCCCCchHHHHHHHHhhcCC--EEEeeccccCcchhHHHHHHHHHHhhcCCceEEEEeccceEEeHHHH
Q 021371 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGD--FLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATL 243 (313)
Q Consensus 166 ~i~v~FViG~s~~~~~~~~~~I~~E~~~~gD--IL~ld~~DsY~nLt~Kt~~~f~wa~~~~~a~f~vKvDDDv~Vnl~~L 243 (313)
.+.++++...+. +.....+++=.+.|.+ +..+. ...-.....|.-...+ +....+.++++..|+|+.+.++.|
T Consensus 70 ~~EIivvdd~s~---D~t~~iv~~~~~~~p~~~i~~v~-~~~~~G~~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L 144 (373)
T TIGR03472 70 GFQMLFGVQDPD---DPALAVVRRLRADFPDADIDLVI-DARRHGPNRKVSNLIN-MLPHARHDILVIADSDISVGPDYL 144 (373)
T ss_pred CeEEEEEeCCCC---CcHHHHHHHHHHhCCCCceEEEE-CCCCCCCChHHHHHHH-HHHhccCCEEEEECCCCCcChhHH
Confidence 367777665443 2222233332355665 32232 1112233456655544 334457899999999999999999
Q ss_pred HHHHhccC
Q 021371 244 GMTLAAHR 251 (313)
Q Consensus 244 ~~~L~~~~ 251 (313)
...+....
T Consensus 145 ~~lv~~~~ 152 (373)
T TIGR03472 145 RQVVAPLA 152 (373)
T ss_pred HHHHHHhc
Confidence 98887764
No 15
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=92.11 E-value=2.7 Score=36.86 Aligned_cols=132 Identities=11% Similarity=-0.009 Sum_probs=58.2
Q ss_pred eEEEEEcccCCCCCCchHHHHHHHHhhcCCE--EEeeccccCcch--hHHHHHHHHHHhhcCCceEEEEeccceEEeHHH
Q 021371 167 IIIRFVIGHSATSGGILDKAIDAEEKMHGDF--LRLEHIEGYLEL--SAKTKTYFATAVSMWDAEFYIKVDDDVHVNLAT 242 (313)
Q Consensus 167 i~v~FViG~s~~~~~~~~~~I~~E~~~~gDI--L~ld~~DsY~nL--t~Kt~~~f~wa~~~~~a~f~vKvDDDv~Vnl~~ 242 (313)
+.+.+|...+. +.....+++-...+... -.+... .|. ..|.. .++++...-+.+|++.+|||+.+.++.
T Consensus 31 ~~v~vvd~~~~---~~~~~~~~~~~~~~~~~~v~vi~~~---~~~g~~~k~~-a~n~~~~~~~~d~i~~lD~D~~~~p~~ 103 (228)
T PF13641_consen 31 LEVVVVDDGSD---DETAEILRALAARYPRVRVRVIRRP---RNPGPGGKAR-ALNEALAAARGDYILFLDDDTVLDPDW 103 (228)
T ss_dssp EEEEEEEE-SS---S-GCTTHHHHHHTTGG-GEEEEE-------HHHHHHHH-HHHHHHHH---SEEEEE-SSEEE-CHH
T ss_pred eEEEEEECCCC---hHHHHHHHHHHHHcCCCceEEeecC---CCCCcchHHH-HHHHHHHhcCCCEEEEECCCcEECHHH
Confidence 55555553332 22333444444555542 222221 222 23443 345655444699999999999999999
Q ss_pred HHHHHhcc-CCCCceEEEEecC--Cc-ccc----cCCCccccCcccccCCCCCCCCcCcccceeeeCHHHHHHH
Q 021371 243 LGMTLAAH-RTKPRVYVGCMKS--GP-VLA----RKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYI 308 (313)
Q Consensus 243 L~~~L~~~-~~~~~vY~G~~~~--~p-V~r----d~~~Kw~~pe~~~fg~~~~~YP~y~~G~~YiiS~dla~~I 308 (313)
|..++... .+.-.+..|.+.. +. ... .....|+... ..+..... ..++.|++.++.+++++.+
T Consensus 104 l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~G~~~~~rr~~~~~~ 174 (228)
T PF13641_consen 104 LERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHLRF-RSGRRALG--VAFLSGSGMLFRRSALEEV 174 (228)
T ss_dssp HHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EETTTS--TT-B------S-B--TEEEEEHHHHHHH
T ss_pred HHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhhhh-hhhhcccc--eeeccCcEEEEEHHHHHHh
Confidence 99888877 3433444444321 11 100 0001111111 01111111 1346899999999999876
No 16
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=91.82 E-value=2.5 Score=36.75 Aligned_cols=134 Identities=14% Similarity=0.027 Sum_probs=68.8
Q ss_pred eEEEEEcccCCCCCCchHHHHHHHHhhc--CCEEEeeccccCcchhHHHHHHHHHHhhcCCceEEEEeccceEEeHHHHH
Q 021371 167 IIIRFVIGHSATSGGILDKAIDAEEKMH--GDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLG 244 (313)
Q Consensus 167 i~v~FViG~s~~~~~~~~~~I~~E~~~~--gDIL~ld~~DsY~nLt~Kt~~~f~wa~~~~~a~f~vKvDDDv~Vnl~~L~ 244 (313)
+.+..|-..+.+ .....+. +...+ ..+..+...+ ..+. -|. ..++++....+.+|++.+|+|..+.++.|.
T Consensus 29 ~eiivvdd~s~d---~t~~~~~-~~~~~~~~~v~~~~~~~-~~~~-g~~-~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~ 101 (229)
T cd04192 29 FEVILVDDHSTD---GTVQILE-FAAAKPNFQLKILNNSR-VSIS-GKK-NALTTAIKAAKGDWIVTTDADCVVPSNWLL 101 (229)
T ss_pred eEEEEEcCCCCc---ChHHHHH-HHHhCCCcceEEeeccC-cccc-hhH-HHHHHHHHHhcCCEEEEECCCcccCHHHHH
Confidence 566666655432 2333343 23233 3455555444 2232 222 234555554578999999999999999888
Q ss_pred HHHhccCCC-CceEEEEecCCcccccCCCccccCcccc-----cCCCCCCCCcCcccceeeeCHHHHHHH
Q 021371 245 MTLAAHRTK-PRVYVGCMKSGPVLARKGVKYYEPEYWK-----FGEIGNKYFRHATGQLYALSKDLATYI 308 (313)
Q Consensus 245 ~~L~~~~~~-~~vY~G~~~~~pV~rd~~~Kw~~pe~~~-----fg~~~~~YP~y~~G~~YiiS~dla~~I 308 (313)
.++...... ..++.|.....+.- .....+...++.. .+.....++..+.|+++++.+++...+
T Consensus 102 ~l~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~ 170 (229)
T cd04192 102 TFVAFIQKEQIGLVAGPVIYFKGK-SLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANMAYRKEAFFEV 170 (229)
T ss_pred HHHHHhhcCCCcEEeeeeeecCCc-cHHHHHHHHHHHHHHHHHhhHHHhcCccccccceEEEEHHHHHHh
Confidence 888755432 33444432111000 0000000000000 000122455567899999999998876
No 17
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=91.66 E-value=3.6 Score=33.01 Aligned_cols=94 Identities=11% Similarity=0.130 Sum_probs=50.4
Q ss_pred HHHHHhhcCCceEEEEeccceEEeHHHHHHHHhccCCCC--ceEEEEecC---C-ccccc-CCCccccCccccc-CCCCC
Q 021371 216 YFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKP--RVYVGCMKS---G-PVLAR-KGVKYYEPEYWKF-GEIGN 287 (313)
Q Consensus 216 ~f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~~L~~~~~~~--~vY~G~~~~---~-pV~rd-~~~Kw~~pe~~~f-g~~~~ 287 (313)
..+++....+.+|++.+|+|..+.++.|..++......+ .+..|.... . ..... ...++........ +....
T Consensus 69 ~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
T cd06423 69 ALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSAL 148 (180)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhhee
Confidence 345555545899999999999999888888755544333 233333221 1 11100 0011111100000 00012
Q ss_pred CCCcCcccceeeeCHHHHHHHH
Q 021371 288 KYFRHATGQLYALSKDLATYIS 309 (313)
Q Consensus 288 ~YP~y~~G~~YiiS~dla~~I~ 309 (313)
.++.++.|.++++++++...+-
T Consensus 149 ~~~~~~~g~~~~~~~~~~~~~g 170 (180)
T cd06423 149 GGVLVLSGAFGAFRREALREVG 170 (180)
T ss_pred cceeecCchHHHHHHHHHHHhC
Confidence 3445678999999999988763
No 18
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=89.49 E-value=12 Score=36.57 Aligned_cols=82 Identities=18% Similarity=0.094 Sum_probs=46.2
Q ss_pred eEEEEEcccCCCCCCchHHHHHHHHhhcC---CEEEeeccccCcchhHHHH---HHHHHHhh-cCCceEEEEeccceEEe
Q 021371 167 IIIRFVIGHSATSGGILDKAIDAEEKMHG---DFLRLEHIEGYLELSAKTK---TYFATAVS-MWDAEFYIKVDDDVHVN 239 (313)
Q Consensus 167 i~v~FViG~s~~~~~~~~~~I~~E~~~~g---DIL~ld~~DsY~nLt~Kt~---~~f~wa~~-~~~a~f~vKvDDDv~Vn 239 (313)
+.+.+|-..|.+ .....+++=.+++. .+..+...+.-.+-.-|.. .+++.|.. +.+.+|++.+|+|+.+.
T Consensus 71 ~eIIVVDd~StD---~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~ 147 (384)
T TIGR03469 71 LHVILVDDHSTD---GTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAHG 147 (384)
T ss_pred eEEEEEeCCCCC---cHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCCC
Confidence 567666665542 22222222223343 3444443332223334433 34444442 34589999999999999
Q ss_pred HHHHHHHHhccC
Q 021371 240 LATLGMTLAAHR 251 (313)
Q Consensus 240 l~~L~~~L~~~~ 251 (313)
++.|...+....
T Consensus 148 p~~l~~lv~~~~ 159 (384)
T TIGR03469 148 PDNLARLVARAR 159 (384)
T ss_pred hhHHHHHHHHHH
Confidence 999888887654
No 19
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=89.23 E-value=4.5 Score=34.24 Aligned_cols=133 Identities=13% Similarity=0.064 Sum_probs=72.5
Q ss_pred CeEEEEEcccCCCCCCchHHHHHHHHhhcCCEEEeeccccCcchhHHHHHHHHHHhhcCCceEEEEeccceEEeHHHHHH
Q 021371 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGM 245 (313)
Q Consensus 166 ~i~v~FViG~s~~~~~~~~~~I~~E~~~~gDIL~ld~~DsY~nLt~Kt~~~f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~ 245 (313)
.+.+..|-+.+.+ .....+.....++..+..+.+...+. |. .+++.+......+|++.+|+|....++.|..
T Consensus 29 ~~eiivvdd~s~d---~t~~~~~~~~~~~~~i~~i~~~~n~G----~~-~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~ 100 (181)
T cd04187 29 DYEIIFVDDGSTD---RTLEILRELAARDPRVKVIRLSRNFG----QQ-AALLAGLDHARGDAVITMDADLQDPPELIPE 100 (181)
T ss_pred CeEEEEEeCCCCc---cHHHHHHHHHhhCCCEEEEEecCCCC----cH-HHHHHHHHhcCCCEEEEEeCCCCCCHHHHHH
Confidence 4566666555432 23333444445566666666544331 11 3334444434569999999999999888888
Q ss_pred HHhccCCCCceEEEEecC--CcccccCCCccccCcccccCCCCCCCCcCcccceeeeCHHHHHHHH
Q 021371 246 TLAAHRTKPRVYVGCMKS--GPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYIS 309 (313)
Q Consensus 246 ~L~~~~~~~~vY~G~~~~--~pV~rd~~~Kw~~pe~~~fg~~~~~YP~y~~G~~YiiS~dla~~I~ 309 (313)
++........+.+|.... .+..+.-..+.+...... ......+...|+++++++++.+.+.
T Consensus 101 l~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~r~~~~~i~ 163 (181)
T cd04187 101 MLAKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINK---LSGVDIPDNGGDFRLMDRKVVDALL 163 (181)
T ss_pred HHHHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHH---HcCCCCCCCCCCEEEEcHHHHHHHH
Confidence 888755556666666431 111100001111000000 0112344567888999999998764
No 20
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=87.99 E-value=16 Score=31.97 Aligned_cols=87 Identities=14% Similarity=0.011 Sum_probs=49.4
Q ss_pred CeEEEEEcccCCCCCCchHHHHHHHHhhcCCEEEeeccccCcchhHHHHHHHHHHhhcCCceEEEEeccceEEeHHHHHH
Q 021371 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGM 245 (313)
Q Consensus 166 ~i~v~FViG~s~~~~~~~~~~I~~E~~~~gDIL~ld~~DsY~nLt~Kt~~~f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~ 245 (313)
.+.++.|-+.+. +.....+....+++..+....-.+. ... .+++.+....+.+|++.+|||..+.++.|..
T Consensus 31 ~~evivvd~~s~---d~~~~~~~~~~~~~~~v~~i~~~~~--~~~----~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~~ 101 (249)
T cd02525 31 LIEIIVVDGGST---DGTREIVQEYAAKDPRIRLIDNPKR--IQS----AGLNIGIRNSRGDIIIRVDAHAVYPKDYILE 101 (249)
T ss_pred ccEEEEEeCCCC---ccHHHHHHHHHhcCCeEEEEeCCCC--Cch----HHHHHHHHHhCCCEEEEECCCccCCHHHHHH
Confidence 456666655543 2334444444444333443332211 111 3456655545789999999999999998888
Q ss_pred HHhccCCCC-ceEEEEe
Q 021371 246 TLAAHRTKP-RVYVGCM 261 (313)
Q Consensus 246 ~L~~~~~~~-~vY~G~~ 261 (313)
.+......+ .+..|++
T Consensus 102 ~~~~~~~~~~~~v~~~~ 118 (249)
T cd02525 102 LVEALKRTGADNVGGPM 118 (249)
T ss_pred HHHHHhcCCCCEEecce
Confidence 886554333 3444543
No 21
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=85.81 E-value=7.1 Score=32.75 Aligned_cols=131 Identities=9% Similarity=0.018 Sum_probs=70.7
Q ss_pred CeEEEEEcccCCCCCCchHHHHHHHHhhcCCEEEeeccccCcchhHHHHHHHHHHhhcCCceEEEEeccceEEeHHHHHH
Q 021371 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGM 245 (313)
Q Consensus 166 ~i~v~FViG~s~~~~~~~~~~I~~E~~~~gDIL~ld~~DsY~nLt~Kt~~~f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~ 245 (313)
.+.+..|-..+. +.....+..-..++..+..+...+... . -..+..+..+...+|++..|+|..+.++.|..
T Consensus 28 ~~eiivvd~~s~---d~~~~~~~~~~~~~~~~~~~~~~~n~G-~----~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~ 99 (185)
T cd04179 28 DYEIIVVDDGST---DGTAEIARELAARVPRVRVIRLSRNFG-K----GAAVRAGFKAARGDIVVTMDADLQHPPEDIPK 99 (185)
T ss_pred CEEEEEEcCCCC---CChHHHHHHHHHhCCCeEEEEccCCCC-c----cHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence 345555544433 234444555555666665555554442 1 13345555444559999999999999999999
Q ss_pred HHhc-cCCCCceEEEEec--CC----cccccCCCccccCcccccCCCCCCC-CcCcccceeeeCHHHHHHH
Q 021371 246 TLAA-HRTKPRVYVGCMK--SG----PVLARKGVKYYEPEYWKFGEIGNKY-FRHATGQLYALSKDLATYI 308 (313)
Q Consensus 246 ~L~~-~~~~~~vY~G~~~--~~----pV~rd~~~Kw~~pe~~~fg~~~~~Y-P~y~~G~~YiiS~dla~~I 308 (313)
++.. ......+.+|... .+ +..+. ...+... +.+. ..... .....|+.+++.+++.+.|
T Consensus 100 l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~-~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~r~~~~~i 166 (185)
T cd04179 100 LLEKLLEGGADVVIGSRFVRGGGAGMPLLRR-LGSRLFN--FLIR-LLLGVRISDTQSGFRLFRREVLEAL 166 (185)
T ss_pred HHHHHhccCCcEEEEEeecCCCcccchHHHH-HHHHHHH--HHHH-HHcCCCCcCCCCceeeeHHHHHHHH
Confidence 8886 4444566666532 11 11100 0000000 0000 00112 2335688889999999887
No 22
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=84.75 E-value=1.1 Score=39.37 Aligned_cols=92 Identities=13% Similarity=0.000 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHhhcCCceEEEEeccceEEeHHHHHHHHhccCCCCceEEEEecCCcccccCCCc---------cccCccc
Q 021371 210 SAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVK---------YYEPEYW 280 (313)
Q Consensus 210 t~Kt~~~f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~~L~~~~~~~~vY~G~~~~~pV~rd~~~K---------w~~pe~~ 280 (313)
..|+-...+........++++..|+|+.|+++.|..++.......--.+.++. ......+- .+.+.-+
T Consensus 16 N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~---~~~~~~~~~~~l~~~~~~~~~~~~ 92 (175)
T PF13506_consen 16 NPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLP---RGVPARGFWSRLEAAFFNFLPGVL 92 (175)
T ss_pred ChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecc---cccCCcCHHHHHHHHHHhHHHHHH
Confidence 46666555543222588999999999999999999988876431212222221 11111110 1111111
Q ss_pred ccCCCCCCCCcCcccceeeeCHHHHHHH
Q 021371 281 KFGEIGNKYFRHATGQLYALSKDLATYI 308 (313)
Q Consensus 281 ~fg~~~~~YP~y~~G~~YiiS~dla~~I 308 (313)
. .-.-.++|.|+.+++.++++..+
T Consensus 93 ~----a~~~~~~~~G~~m~~rr~~L~~~ 116 (175)
T PF13506_consen 93 Q----ALGGAPFAWGGSMAFRREALEEI 116 (175)
T ss_pred H----HhcCCCceecceeeeEHHHHHHc
Confidence 1 01246789999999999998765
No 23
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=84.65 E-value=25 Score=30.32 Aligned_cols=80 Identities=14% Similarity=0.015 Sum_probs=46.2
Q ss_pred CeEEEEEcccCCCCCCchHHHHHHHHhhcC--CEEEeeccccCcchhHHHHHHHHHHhhcCCceEEEEeccceEEeHHHH
Q 021371 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHG--DFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATL 243 (313)
Q Consensus 166 ~i~v~FViG~s~~~~~~~~~~I~~E~~~~g--DIL~ld~~DsY~nLt~Kt~~~f~wa~~~~~a~f~vKvDDDv~Vnl~~L 243 (313)
.+.+++|...+.+ .....+++-...|. ++..+...... ....|... +..+......+|++..|+|+.+.++.|
T Consensus 30 ~~eiivVdd~s~d---~t~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~-~n~g~~~a~~d~i~~~D~D~~~~~~~l 104 (196)
T cd02520 30 KYEILFCVQDEDD---PAIPVVRKLIAKYPNVDARLLIGGEKV-GINPKVNN-LIKGYEEARYDILVISDSDISVPPDYL 104 (196)
T ss_pred CeEEEEEeCCCcc---hHHHHHHHHHHHCCCCcEEEEecCCcC-CCCHhHHH-HHHHHHhCCCCEEEEECCCceEChhHH
Confidence 3677777766542 22333444445554 33233221111 12234332 344455457899999999999999888
Q ss_pred HHHHhcc
Q 021371 244 GMTLAAH 250 (313)
Q Consensus 244 ~~~L~~~ 250 (313)
..++...
T Consensus 105 ~~l~~~~ 111 (196)
T cd02520 105 RRMVAPL 111 (196)
T ss_pred HHHHHHh
Confidence 8888764
No 24
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=84.43 E-value=25 Score=33.77 Aligned_cols=134 Identities=10% Similarity=0.045 Sum_probs=69.6
Q ss_pred CCeEEEEEcccCCCCCCchHHHHHHHHhhcCC-EEEeeccccCcchhHHHHHHHHHHhhcCCceEEEEeccceEEeHHHH
Q 021371 165 KGIIIRFVIGHSATSGGILDKAIDAEEKMHGD-FLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATL 243 (313)
Q Consensus 165 ~~i~v~FViG~s~~~~~~~~~~I~~E~~~~gD-IL~ld~~DsY~nLt~Kt~~~f~wa~~~~~a~f~vKvDDDv~Vnl~~L 243 (313)
..+.+++|-..|.+ .....+++-.+.+++ ++...+..++ ....=..+++++ .+.+|++.+|+|.-.+++.+
T Consensus 37 ~~~EIIvVDDgS~D---~T~~il~~~~~~~~~~v~~i~~~~n~-G~~~A~~~G~~~----A~gd~vv~~DaD~q~~p~~i 108 (325)
T PRK10714 37 KEYEILLIDDGSSD---NSAEMLVEAAQAPDSHIVAILLNRNY-GQHSAIMAGFSH----VTGDLIITLDADLQNPPEEI 108 (325)
T ss_pred CCEEEEEEeCCCCC---cHHHHHHHHHhhcCCcEEEEEeCCCC-CHHHHHHHHHHh----CCCCEEEEECCCCCCCHHHH
Confidence 34678788766653 222233332334444 4444444433 211212233333 37899999999999999999
Q ss_pred HHHHhccCCCCceEEEEecC--CcccccCCCccccCcccccCCCCCCCCcCcccceeeeCHHHHHHHH
Q 021371 244 GMTLAAHRTKPRVYVGCMKS--GPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYIS 309 (313)
Q Consensus 244 ~~~L~~~~~~~~vY~G~~~~--~pV~rd~~~Kw~~pe~~~fg~~~~~YP~y~~G~~YiiS~dla~~I~ 309 (313)
..+++......++..|.... .+..+.-.++.+.--...+ .+..++.+.+| .-++++++++.|.
T Consensus 109 ~~l~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~~--~g~~~~d~~~g-fr~~~r~~~~~l~ 173 (325)
T PRK10714 109 PRLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRT--TGKAMGDYGCM-LRAYRRHIVDAML 173 (325)
T ss_pred HHHHHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHHHH--cCCCCCCCCcC-eEEEcHHHHHHHH
Confidence 88888764334555554321 2332222222221100011 12234444333 4589999999874
No 25
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=83.61 E-value=13 Score=30.68 Aligned_cols=95 Identities=13% Similarity=0.064 Sum_probs=47.0
Q ss_pred EEeCCCCCHHHHHHHHHHhhhcchhhhhhhccCCeEEEEEcccCCCCCCchHHHHHHHHhhcCCEEE-eeccccCcchhH
Q 021371 133 GINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLR-LEHIEGYLELSA 211 (313)
Q Consensus 133 ~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~i~v~FViG~s~~~~~~~~~~I~~E~~~~gDIL~-ld~~DsY~nLt~ 211 (313)
.|.+-+...+||+.+++.... .++.+.|+-|-.... .....+......+..... -+..-+.-.-.+
T Consensus 3 ~vInL~~~~~Rr~~~~~~~~~-----------~~~~~~~~~Avd~~~--~~~~~~~~~~~~~~~~~~~~~l~~gEiGC~l 69 (128)
T cd06532 3 FVINLDRSTDRRERMEAQLAA-----------LGLDFEFFDAVDGKD--LSEEELAALYDALFLPRYGRPLTPGEIGCFL 69 (128)
T ss_pred EEEECCCCHHHHHHHHHHHHH-----------cCCCeEEEecccccc--CCHHHHHHHhHHHhhhhcCCCCChhhHHHHH
Confidence 456677788999999885543 345566776665421 112222221111000000 001111111122
Q ss_pred HHHHHHHHHhhcCCceEEEEeccceEEeHH
Q 021371 212 KTKTYFATAVSMWDAEFYIKVDDDVHVNLA 241 (313)
Q Consensus 212 Kt~~~f~wa~~~~~a~f~vKvDDDv~Vnl~ 241 (313)
-.+..++.++. .+.++.+-..||+.+..+
T Consensus 70 SH~~~w~~~~~-~~~~~alIlEDDv~~~~~ 98 (128)
T cd06532 70 SHYKLWQKIVE-SNLEYALILEDDAILDPD 98 (128)
T ss_pred HHHHHHHHHHH-cCCCeEEEEccCcEECCC
Confidence 22333333443 366899999999999776
No 26
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=82.04 E-value=10 Score=32.85 Aligned_cols=84 Identities=10% Similarity=0.039 Sum_probs=47.2
Q ss_pred CceEEEEeccceEEeHHHHHHHHhc-cCCCCceEEEEe-cCCcccccCCCcc--ccC-cccccCCC-CCCCCcCccccee
Q 021371 225 DAEFYIKVDDDVHVNLATLGMTLAA-HRTKPRVYVGCM-KSGPVLARKGVKY--YEP-EYWKFGEI-GNKYFRHATGQLY 298 (313)
Q Consensus 225 ~a~f~vKvDDDv~Vnl~~L~~~L~~-~~~~~~vY~G~~-~~~pV~rd~~~Kw--~~p-e~~~fg~~-~~~YP~y~~G~~Y 298 (313)
..+|++.+|+|..+.++.|..++.. ..+...+.+|.. ...... .....+ +.+ ....+.-. ...-.++++|++.
T Consensus 78 ~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (224)
T cd06442 78 RGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGV-EGWGLKRKLISRGANLLARLLLGRKVSDPTSGFR 156 (224)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCcc-CCCcHHHHHHHHHHHHHHHHHcCCCCCCCCCccc
Confidence 4589999999999999988888887 445556666653 211111 000000 000 00000000 0112345788888
Q ss_pred eeCHHHHHHHH
Q 021371 299 ALSKDLATYIS 309 (313)
Q Consensus 299 iiS~dla~~I~ 309 (313)
+++++++..+-
T Consensus 157 ~~~r~~~~~ig 167 (224)
T cd06442 157 AYRREVLEKLI 167 (224)
T ss_pred hhhHHHHHHHh
Confidence 99999998773
No 27
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=81.46 E-value=23 Score=30.17 Aligned_cols=150 Identities=13% Similarity=0.051 Sum_probs=72.4
Q ss_pred HHHHHHhhhcchhhhhhhccCCeEEEEEcccCCCCCCchHHHHHHHHhhcCC-EEEeeccccCcchhHHHHHHHHHHhhc
Q 021371 145 DSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGD-FLRLEHIEGYLELSAKTKTYFATAVSM 223 (313)
Q Consensus 145 ~aIR~TW~~~~~~~~~l~~~~~i~v~FViG~s~~~~~~~~~~I~~E~~~~gD-IL~ld~~DsY~nLt~Kt~~~f~wa~~~ 223 (313)
+.|.+++-+.... ....+.+++|-..+.+ .....+++-...|+. +.......+. .... .+..+...
T Consensus 11 ~~l~~~l~sl~~q-----~~~~~eiiVvddgS~d---~t~~~~~~~~~~~~~~~~~~~~~~~~-G~~~----~~n~g~~~ 77 (214)
T cd04196 11 KYLREQLDSILAQ-----TYKNDELIISDDGSTD---GTVEIIKEYIDKDPFIIILIRNGKNL-GVAR----NFESLLQA 77 (214)
T ss_pred HHHHHHHHHHHhC-----cCCCeEEEEEeCCCCC---CcHHHHHHHHhcCCceEEEEeCCCCc-cHHH----HHHHHHHh
Confidence 4566666553210 1124667666554432 233334433344432 3333333322 2222 22333444
Q ss_pred CCceEEEEeccceEEeHHHHHHHHhc-c-CCCCceEEEEec----CCcccccCCCccccCc-ccccCCCCCCCCcCcccc
Q 021371 224 WDAEFYIKVDDDVHVNLATLGMTLAA-H-RTKPRVYVGCMK----SGPVLARKGVKYYEPE-YWKFGEIGNKYFRHATGQ 296 (313)
Q Consensus 224 ~~a~f~vKvDDDv~Vnl~~L~~~L~~-~-~~~~~vY~G~~~----~~pV~rd~~~Kw~~pe-~~~fg~~~~~YP~y~~G~ 296 (313)
...+|++..|+|..+.++.|..++.. . .+...++.|.+. .+.+.....-.+.... ...+ .......++.|+
T Consensus 78 ~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 155 (214)
T cd04196 78 ADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSF--NNLLFQNVVTGC 155 (214)
T ss_pred CCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCcccccccccccCCccCH--HHHHHhCccCCc
Confidence 57899999999999999988888886 2 233334444321 1122110000000000 0000 000122456788
Q ss_pred eeeeCHHHHHHHH
Q 021371 297 LYALSKDLATYIS 309 (313)
Q Consensus 297 ~YiiS~dla~~I~ 309 (313)
++++.++++..+.
T Consensus 156 ~~~~r~~~~~~~~ 168 (214)
T cd04196 156 TMAFNRELLELAL 168 (214)
T ss_pred eeeEEHHHHHhhc
Confidence 9999999988764
No 28
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=79.05 E-value=55 Score=30.41 Aligned_cols=39 Identities=15% Similarity=0.127 Sum_probs=28.1
Q ss_pred HHHHhhcCCceEEEEeccceEEeHHHHHHHHhccCCCCc
Q 021371 217 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPR 255 (313)
Q Consensus 217 f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~~L~~~~~~~~ 255 (313)
.+.+...-..+|++..|+|+.+.++-|..++......+.
T Consensus 75 ~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~ 113 (299)
T cd02510 75 RIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRK 113 (299)
T ss_pred HHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCC
Confidence 344444346899999999999998888887776544343
No 29
>PRK11204 N-glycosyltransferase; Provisional
Probab=77.47 E-value=48 Score=32.46 Aligned_cols=68 Identities=13% Similarity=0.175 Sum_probs=44.7
Q ss_pred hHHHHHHHHhhcCCEEEeeccccCcchhHHHHHHHHHHhhcCCceEEEEeccceEEeHHHHHHHHhccCCCCc
Q 021371 183 LDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPR 255 (313)
Q Consensus 183 ~~~~I~~E~~~~gDIL~ld~~DsY~nLt~Kt~~~f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~~L~~~~~~~~ 255 (313)
....+++..++|..+..++..++ . -|. ..++.+....+.+|++..|+|..+.++.|...+......++
T Consensus 97 t~~~l~~~~~~~~~v~~i~~~~n---~-Gka-~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~ 164 (420)
T PRK11204 97 TGEILDRLAAQIPRLRVIHLAEN---Q-GKA-NALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPR 164 (420)
T ss_pred HHHHHHHHHHhCCcEEEEEcCCC---C-CHH-HHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCC
Confidence 44445555566666666554332 2 243 33566555558899999999999999999888887643443
No 30
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=77.45 E-value=10 Score=32.42 Aligned_cols=89 Identities=13% Similarity=0.056 Sum_probs=52.7
Q ss_pred HHHHHHhh-cCCceEEEEeccceEEeHHHHHHHHhccCCCCceEEEEecCCcccccCCCccccC----cc----c--ccC
Q 021371 215 TYFATAVS-MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEP----EY----W--KFG 283 (313)
Q Consensus 215 ~~f~wa~~-~~~a~f~vKvDDDv~Vnl~~L~~~L~~~~~~~~vY~G~~~~~pV~rd~~~Kw~~p----e~----~--~fg 283 (313)
.+++++.. ..+.+|++.+|.|+.+.++.|..++........+..|+.... ++...|.-. ++ + ..+
T Consensus 70 ~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (183)
T cd06438 70 FGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYNSK----NPDDSWITRLYAFAFLVFNRLRPLG 145 (183)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEeee----CCccCHHHHHHHHHHHHHHHHHHHH
Confidence 34444431 246899999999999999988888887765556666664311 111122110 00 0 000
Q ss_pred CCCCCCCcCcccceeeeCHHHHHH
Q 021371 284 EIGNKYFRHATGQLYALSKDLATY 307 (313)
Q Consensus 284 ~~~~~YP~y~~G~~YiiS~dla~~ 307 (313)
...-.-+.++.|.++++++++.+.
T Consensus 146 ~~~~~~~~~~~G~~~~~rr~~l~~ 169 (183)
T cd06438 146 RSNLGLSCQLGGTGMCFPWAVLRQ 169 (183)
T ss_pred HHHcCCCeeecCchhhhHHHHHHh
Confidence 000122346789999999999876
No 31
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=77.44 E-value=36 Score=27.43 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=24.1
Q ss_pred CCceEEEEeccceEEeHHHHHHHHhccC
Q 021371 224 WDAEFYIKVDDDVHVNLATLGMTLAAHR 251 (313)
Q Consensus 224 ~~a~f~vKvDDDv~Vnl~~L~~~L~~~~ 251 (313)
-+.+|++.+|||..+.++.+..++....
T Consensus 73 ~~~~~i~~~D~D~~~~~~~l~~~~~~~~ 100 (166)
T cd04186 73 AKGDYVLLLNPDTVVEPGALLELLDAAE 100 (166)
T ss_pred CCCCEEEEECCCcEECccHHHHHHHHHH
Confidence 3899999999999999998888887544
No 32
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=77.42 E-value=9.2 Score=32.07 Aligned_cols=88 Identities=13% Similarity=-0.015 Sum_probs=49.2
Q ss_pred HHHHhhcCCceEEEEeccceEEeHHHHHHHHhcc--CCCCceEEEEec--CCcccccCCCccccCcccccCCCCCCCCcC
Q 021371 217 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAH--RTKPRVYVGCMK--SGPVLARKGVKYYEPEYWKFGEIGNKYFRH 292 (313)
Q Consensus 217 f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~~L~~~--~~~~~vY~G~~~--~~pV~rd~~~Kw~~pe~~~fg~~~~~YP~y 292 (313)
++.+....+.+|++..|+|..+..+.+...+... .++..+..|... .+... ....+...+.. . .......+
T Consensus 67 ~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~-~~~~~~~~~~~-~---~~~~~~~~ 141 (202)
T cd06433 67 MNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGR-VIGRRRPPPFL-D---KFLLYGMP 141 (202)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCC-cccCCCCcchh-h---hHHhhcCc
Confidence 4445544478999999999999999999887433 234455555532 11110 00111001111 0 11122345
Q ss_pred cccceeeeCHHHHHHHH
Q 021371 293 ATGQLYALSKDLATYIS 309 (313)
Q Consensus 293 ~~G~~YiiS~dla~~I~ 309 (313)
+.|++.++++++...+.
T Consensus 142 ~~~~~~~~~~~~~~~~~ 158 (202)
T cd06433 142 ICHQATFFRRSLFEKYG 158 (202)
T ss_pred ccCcceEEEHHHHHHhC
Confidence 66778889999887763
No 33
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=74.85 E-value=52 Score=30.17 Aligned_cols=57 Identities=7% Similarity=-0.014 Sum_probs=35.8
Q ss_pred hcCCEEEeeccccCcchhHHHHHHHHHHhhcCCceEEEEeccceEEeHHHHHHHHhccC
Q 021371 193 MHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHR 251 (313)
Q Consensus 193 ~~gDIL~ld~~DsY~nLt~Kt~~~f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~~L~~~~ 251 (313)
.+..|..+...++. ....=.-.++++|.. .+.+|++..|||..+..+.|..++....
T Consensus 43 ~~~~i~~i~~~~N~-G~a~a~N~Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~~~~ 99 (281)
T TIGR01556 43 RGQKIALIHLGDNQ-GIAGAQNQGLDASFR-RGVQGVLLLDQDSRPGNAFLAAQWKLLS 99 (281)
T ss_pred cCCCeEEEECCCCc-chHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 34455555443322 222222235566654 3789999999999999888888776543
No 34
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=74.28 E-value=42 Score=29.45 Aligned_cols=36 Identities=22% Similarity=0.142 Sum_probs=28.6
Q ss_pred HHHHHhhc--CCceEEEEeccceEEeHHHHHHHHhccC
Q 021371 216 YFATAVSM--WDAEFYIKVDDDVHVNLATLGMTLAAHR 251 (313)
Q Consensus 216 ~f~wa~~~--~~a~f~vKvDDDv~Vnl~~L~~~L~~~~ 251 (313)
.+.++... .+.+|++..|+|+.+.++.|..++....
T Consensus 73 a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 73 ALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 45666542 3579999999999999999999887764
No 35
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=73.70 E-value=32 Score=32.46 Aligned_cols=63 Identities=17% Similarity=0.089 Sum_probs=40.1
Q ss_pred cCCEEEeeccccCcchhHHHHHHHHHHhhcCCceEEEEeccceEEeHHHHHHHHhccCCCCceEE
Q 021371 194 HGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYV 258 (313)
Q Consensus 194 ~gDIL~ld~~DsY~nLt~Kt~~~f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~~L~~~~~~~~vY~ 258 (313)
+.++..+...++.-= ..=.-.++..|....+. |++-.++|+.+.++.|.++++.....+...+
T Consensus 55 ~~~v~~i~~~~NlG~-agg~n~g~~~a~~~~~~-~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~ 117 (305)
T COG1216 55 FPNVRLIENGENLGF-AGGFNRGIKYALAKGDD-YVLLLNPDTVVEPDLLEELLKAAEEDPAAGV 117 (305)
T ss_pred CCcEEEEEcCCCccc-hhhhhHHHHHHhcCCCc-EEEEEcCCeeeChhHHHHHHHHHHhCCCCeE
Confidence 677777765553311 11111455565542222 9999999999999999999998865544333
No 36
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=71.74 E-value=39 Score=29.49 Aligned_cols=75 Identities=12% Similarity=0.126 Sum_probs=45.1
Q ss_pred eEEEEEcccCCCCCCchHHHHHHHHhhcCCEEEeeccccCcchhHHHHHHHHHHhhcCCceEEEEeccceEEeHHHHHHH
Q 021371 167 IIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMT 246 (313)
Q Consensus 167 i~v~FViG~s~~~~~~~~~~I~~E~~~~gDIL~ld~~DsY~nLt~Kt~~~f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~~ 246 (313)
..+.+|...+. +.....+ .+...+..+.+.. .+. .-|.. .+..+....+.+|++.+|+|+.+.++.|...
T Consensus 29 ~eiivvdd~s~---d~~~~~l-~~~~~~~~~~v~~-~~~----~g~~~-a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l 98 (235)
T cd06434 29 LEIIVVTDGDD---EPYLSIL-SQTVKYGGIFVIT-VPH----PGKRR-ALAEGIRHVTTDIVVLLDSDTVWPPNALPEM 98 (235)
T ss_pred CEEEEEeCCCC---hHHHHHH-HhhccCCcEEEEe-cCC----CChHH-HHHHHHHHhCCCEEEEECCCceeChhHHHHH
Confidence 45555655443 2223223 3445566665554 221 12332 2334444448899999999999999999998
Q ss_pred HhccC
Q 021371 247 LAAHR 251 (313)
Q Consensus 247 L~~~~ 251 (313)
+....
T Consensus 99 ~~~~~ 103 (235)
T cd06434 99 LKPFE 103 (235)
T ss_pred HHhcc
Confidence 88875
No 37
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=70.30 E-value=66 Score=27.23 Aligned_cols=34 Identities=21% Similarity=0.175 Sum_probs=27.3
Q ss_pred HHHHhhcCCceEEEEeccceEEeHHHHHHHHhcc
Q 021371 217 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAH 250 (313)
Q Consensus 217 f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~~L~~~ 250 (313)
++++......+|++..|+|..+.++.|...++..
T Consensus 75 ~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~ 108 (202)
T cd04184 75 TNSALELATGEFVALLDHDDELAPHALYEVVKAL 108 (202)
T ss_pred HHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHH
Confidence 4454444467999999999999999888888876
No 38
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=68.44 E-value=63 Score=28.23 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=33.8
Q ss_pred cCCEEEeeccccCcchhHHHHHHHHHHhhcCCceEEEEeccceEEeHHHHHHHH
Q 021371 194 HGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTL 247 (313)
Q Consensus 194 ~gDIL~ld~~DsY~nLt~Kt~~~f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~~L 247 (313)
...+..+...++. ....=.-.+++.|.. .+++|++..|||+.+.++.|..++
T Consensus 46 ~~~i~~i~~~~n~-G~~~a~N~g~~~a~~-~~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 46 SEKIELIHLGENL-GIAKALNIGIKAALE-NGADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred CCcEEEEECCCce-ehHHhhhHHHHHHHh-CCCCEEEEECCCCCcCHhHHHHHH
Confidence 3455555444332 233333345555443 378999999999999999999885
No 39
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=66.60 E-value=73 Score=27.57 Aligned_cols=88 Identities=10% Similarity=0.009 Sum_probs=52.0
Q ss_pred CeEEEEEcccCCCCCCchHHHHHHHHhhcCCE-EEeeccccCcchhHHHHHHHHHHhhcCCceEEEEeccceEEeHHHHH
Q 021371 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDF-LRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLG 244 (313)
Q Consensus 166 ~i~v~FViG~s~~~~~~~~~~I~~E~~~~gDI-L~ld~~DsY~nLt~Kt~~~f~wa~~~~~a~f~vKvDDDv~Vnl~~L~ 244 (313)
.+.++.|-+.|.+ .....+.+..++++.. ..+...... ... .++..+......+|++.+|+|..+.++.+.
T Consensus 30 ~~eiivvdd~S~D---~t~~~~~~~~~~~~~~i~~i~~~~n~-G~~----~a~~~g~~~a~gd~i~~ld~D~~~~~~~l~ 101 (211)
T cd04188 30 SYEIIVVDDGSKD---GTAEVARKLARKNPALIRVLTLPKNR-GKG----GAVRAGMLAARGDYILFADADLATPFEELE 101 (211)
T ss_pred CEEEEEEeCCCCC---chHHHHHHHHHhCCCcEEEEEcccCC-CcH----HHHHHHHHHhcCCEEEEEeCCCCCCHHHHH
Confidence 4667666655542 3344455555566654 223333222 222 223333333356999999999999999999
Q ss_pred HHHhc-cCCCCceEEEEe
Q 021371 245 MTLAA-HRTKPRVYVGCM 261 (313)
Q Consensus 245 ~~L~~-~~~~~~vY~G~~ 261 (313)
.++.. ......+.+|..
T Consensus 102 ~l~~~~~~~~~~~v~g~r 119 (211)
T cd04188 102 KLEEALKTSGYDIAIGSR 119 (211)
T ss_pred HHHHHHhccCCcEEEEEe
Confidence 98887 344456777763
No 40
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=64.00 E-value=18 Score=35.43 Aligned_cols=80 Identities=16% Similarity=0.284 Sum_probs=49.6
Q ss_pred HHHHHhhcCCceEEEEeccceEEeHH---HHHHHHhccCCCCceEEEEecCCcccccCCCcccc---CcccccCCCCCCC
Q 021371 216 YFATAVSMWDAEFYIKVDDDVHVNLA---TLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYE---PEYWKFGEIGNKY 289 (313)
Q Consensus 216 ~f~wa~~~~~a~f~vKvDDDv~Vnl~---~L~~~L~~~~~~~~vY~G~~~~~pV~rd~~~Kw~~---pe~~~fg~~~~~Y 289 (313)
+++|+....+.++++.++||..+.++ -+.+.|......+++++=+-.+ +.+.+..+ |+. .|
T Consensus 88 aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~N-----dnG~~~~~~~~~~~--------ly 154 (334)
T cd02514 88 ALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWN-----DNGKEHFVDDTPSL--------LY 154 (334)
T ss_pred HHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeec-----cCCcccccCCCcce--------EE
Confidence 56665543479999999999999998 5566776666666665533222 11111111 322 22
Q ss_pred C-cCcccceeeeCHHHHHHH
Q 021371 290 F-RHATGQLYALSKDLATYI 308 (313)
Q Consensus 290 P-~y~~G~~YiiS~dla~~I 308 (313)
. .|+.|.|+++.+++-..+
T Consensus 155 rs~ff~glGWml~r~~W~e~ 174 (334)
T cd02514 155 RTDFFPGLGWMLTRKLWKEL 174 (334)
T ss_pred EecCCCchHHHHHHHHHHHh
Confidence 2 356788888888876654
No 41
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=63.23 E-value=1.3e+02 Score=30.63 Aligned_cols=92 Identities=13% Similarity=0.096 Sum_probs=43.9
Q ss_pred HHHHHHHHHhh----cCCceEEEEeccceEEeHHHHHHHHhcc---CCCCceEEEEecCCcccccCCCccccCcccccCC
Q 021371 212 KTKTYFATAVS----MWDAEFYIKVDDDVHVNLATLGMTLAAH---RTKPRVYVGCMKSGPVLARKGVKYYEPEYWKFGE 284 (313)
Q Consensus 212 Kt~~~f~wa~~----~~~a~f~vKvDDDv~Vnl~~L~~~L~~~---~~~~~vY~G~~~~~pV~rd~~~Kw~~pe~~~fg~ 284 (313)
|.-.=++||.+ ..+++.++.+.||.-|-+|=+.=+.... ...+.+|+=.-.+.+-....... ..|+..|..
T Consensus 174 ~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~ciSawNdnG~~~~~~~-~~~~~lyRs- 251 (434)
T PF03071_consen 174 KIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLWCISAWNDNGKEHFVDD-SRPSLLYRS- 251 (434)
T ss_dssp HHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEEEEES--TT-BGGGS-T-T-TT-EEEE-
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeEEEEccccCCccccccC-CCccceEec-
Confidence 34445567653 3578899999999999876443322222 23456766443321111000000 012223211
Q ss_pred CCCCCCcCcccceeeeCHHHHHHHHhc
Q 021371 285 IGNKYFRHATGQLYALSKDLATYISIN 311 (313)
Q Consensus 285 ~~~~YP~y~~G~~YiiS~dla~~I~~n 311 (313)
+ |..|-|++|++++=..|.-+
T Consensus 252 --d----ffpglGWml~r~~w~el~~~ 272 (434)
T PF03071_consen 252 --D----FFPGLGWMLTRELWDELEPK 272 (434)
T ss_dssp --S----S---SSEEEEHHHHHHHGGG
T ss_pred --c----cCCchHHHhhHHHHHhhccc
Confidence 1 33599999999998877654
No 42
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=62.25 E-value=52 Score=28.55 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=29.4
Q ss_pred HHHHhhcCCceEEEEeccceEEeHHHHHHHHhccCCCCc
Q 021371 217 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPR 255 (313)
Q Consensus 217 f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~~L~~~~~~~~ 255 (313)
+..+....+.+|++.+|+|.++.++.|..++......++
T Consensus 76 ~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~ 114 (234)
T cd06421 76 LNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPK 114 (234)
T ss_pred HHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCC
Confidence 344444447899999999999999988888887654343
No 43
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=61.28 E-value=1e+02 Score=26.21 Aligned_cols=38 Identities=18% Similarity=0.044 Sum_probs=28.7
Q ss_pred HHHHHHHHhhcCCceEEEEeccceEEeHHHHHHHHhccC
Q 021371 213 TKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHR 251 (313)
Q Consensus 213 t~~~f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~~L~~~~ 251 (313)
.-.++++|. ..+.+|++..|||..+.++-|..++....
T Consensus 68 ~n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 68 FYEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYAD 105 (202)
T ss_pred HHHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHh
Confidence 344566665 45789999999999999887777666554
No 44
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=61.23 E-value=1.8e+02 Score=29.02 Aligned_cols=82 Identities=13% Similarity=0.133 Sum_probs=50.2
Q ss_pred CeEEEEEcccCCCCCCchHHHHHHHHhhcCCEEEeeccccCcchhHHHHHHHHHHhhcCCceEEEEeccceEEeHHHHHH
Q 021371 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGM 245 (313)
Q Consensus 166 ~i~v~FViG~s~~~~~~~~~~I~~E~~~~gDIL~ld~~DsY~nLt~Kt~~~f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~ 245 (313)
.+.+.+|-..+. +.....+++..+++..+......+ |. -|. ..++.+....+.+|++..|+|..++++.|..
T Consensus 104 ~~eIivVdDgs~---D~t~~~~~~~~~~~~~v~vv~~~~---n~-Gka-~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~ 175 (444)
T PRK14583 104 NIEVIAINDGSS---DDTAQVLDALLAEDPRLRVIHLAH---NQ-GKA-IALRMGAAAARSEYLVCIDGDALLDKNAVPY 175 (444)
T ss_pred CeEEEEEECCCC---ccHHHHHHHHHHhCCCEEEEEeCC---CC-CHH-HHHHHHHHhCCCCEEEEECCCCCcCHHHHHH
Confidence 456655544332 234444555556666655444322 22 233 3456666556889999999999999999988
Q ss_pred HHhccCCCCc
Q 021371 246 TLAAHRTKPR 255 (313)
Q Consensus 246 ~L~~~~~~~~ 255 (313)
.+......++
T Consensus 176 lv~~~~~~~~ 185 (444)
T PRK14583 176 LVAPLIANPR 185 (444)
T ss_pred HHHHHHhCCC
Confidence 8876543333
No 45
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=59.39 E-value=1.4e+02 Score=29.00 Aligned_cols=137 Identities=12% Similarity=0.061 Sum_probs=75.9
Q ss_pred eEEEEEcccCCCCCCchHHHHHHHHhhcCCEEEeeccccCcchhHHHHHHHHHHhhcCCceEEEEeccceEEeHHHHHHH
Q 021371 167 IIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMT 246 (313)
Q Consensus 167 i~v~FViG~s~~~~~~~~~~I~~E~~~~gDIL~ld~~DsY~nLt~Kt~~~f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~~ 246 (313)
..+..|...+. +..-+.+.+-..++++.+...+. -.+-..| ...+.++....+.++++..|-|+.+.++.|.+.
T Consensus 85 ~evivv~d~~~---d~~~~~~~~~~~~~~~~~~~~~~--~~~~~gK-~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~ 158 (439)
T COG1215 85 YEVIVVDDGST---DETYEILEELGAEYGPNFRVIYP--EKKNGGK-AGALNNGLKRAKGDVVVILDADTVPEPDALREL 158 (439)
T ss_pred ceEEEECCCCC---hhHHHHHHHHHhhcCcceEEEec--cccCccc-hHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHH
Confidence 56666665433 34455566666666544444422 0122222 345667666556999999999999999999999
Q ss_pred HhccCCCCce-EEEEec--CCcccccCCCccccCcccc-c----C-CCCCCCCcCcccceeeeCHHHHHHHH
Q 021371 247 LAAHRTKPRV-YVGCMK--SGPVLARKGVKYYEPEYWK-F----G-EIGNKYFRHATGQLYALSKDLATYIS 309 (313)
Q Consensus 247 L~~~~~~~~v-Y~G~~~--~~pV~rd~~~Kw~~pe~~~-f----g-~~~~~YP~y~~G~~YiiS~dla~~I~ 309 (313)
+......+.. ++|... +.+.....-.+-..-++.- + . ......+..|.|...++-+++++.+-
T Consensus 159 ~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~G~~~~~rr~aL~~~g 230 (439)
T COG1215 159 VSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKGGLISFLSGSSSAFRRSALEEVG 230 (439)
T ss_pred HhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhhHHHhhhhhhhcCCeEEEcceeeeEEHHHHHHhC
Confidence 9988655444 333321 1110000001101111100 0 0 01223577899999999999988764
No 46
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=55.23 E-value=1.3e+02 Score=25.44 Aligned_cols=45 Identities=9% Similarity=0.062 Sum_probs=31.7
Q ss_pred HHHHhhcCCceEEEEeccceEEeHHHHHHHHhccCCC--CceEEEEe
Q 021371 217 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTK--PRVYVGCM 261 (313)
Q Consensus 217 f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~~L~~~~~~--~~vY~G~~ 261 (313)
++.+....+.+|++..|+|..+.++.|...+.....+ -.++.|.+
T Consensus 72 ~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~ 118 (201)
T cd04195 72 LNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGV 118 (201)
T ss_pred HHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccE
Confidence 4555544578999999999999999888888765332 23444443
No 47
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=54.61 E-value=2.3e+02 Score=28.25 Aligned_cols=40 Identities=13% Similarity=0.220 Sum_probs=31.6
Q ss_pred HHHHHhhcCCceEEEEeccceEEeHHHHHHHHhccCCCCc
Q 021371 216 YFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPR 255 (313)
Q Consensus 216 ~f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~~L~~~~~~~~ 255 (313)
+++++....+.+|++.+|+|..+.++.|...+......++
T Consensus 122 AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~ 161 (439)
T TIGR03111 122 ALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPD 161 (439)
T ss_pred HHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCC
Confidence 4566666567899999999999999999998877654443
No 48
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=52.66 E-value=21 Score=30.57 Aligned_cols=79 Identities=13% Similarity=0.031 Sum_probs=44.7
Q ss_pred EEEEeccceEEeHHHHHHHHhccCCCCceEEE--EecCCcccccCCCccccCccc----cc--CCCCCCCCcCcccceee
Q 021371 228 FYIKVDDDVHVNLATLGMTLAAHRTKPRVYVG--CMKSGPVLARKGVKYYEPEYW----KF--GEIGNKYFRHATGQLYA 299 (313)
Q Consensus 228 f~vKvDDDv~Vnl~~L~~~L~~~~~~~~vY~G--~~~~~pV~rd~~~Kw~~pe~~----~f--g~~~~~YP~y~~G~~Yi 299 (313)
|++-+|+|+.+..+-|...+.... .+++-+. .....+. .+.-.++..-++. .+ .......+.++.|++.+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~-~~~~~~vq~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 78 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALE-DPKVDAVQGPIIFRNR-GSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGML 78 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHh-CCCceEEEccEEecCC-CChhheeehhhhhhhhhhhHHHHHhcCCCccccCccee
Confidence 678899999999999988887765 3432222 2211000 0001112222210 00 00112346678999999
Q ss_pred eCHHHHHHH
Q 021371 300 LSKDLATYI 308 (313)
Q Consensus 300 iS~dla~~I 308 (313)
+.+++.+.+
T Consensus 79 ~r~~~l~~v 87 (193)
T PF13632_consen 79 FRREALREV 87 (193)
T ss_pred eeHHHHHHh
Confidence 999999876
No 49
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=52.65 E-value=1.6e+02 Score=28.14 Aligned_cols=96 Identities=16% Similarity=0.067 Sum_probs=58.4
Q ss_pred cCCeEEEEEcccCCCCCCchHHHHHHHH----------hhcCCEEEe--ecccc------------CcchhHHHHHHH-H
Q 021371 164 AKGIIIRFVIGHSATSGGILDKAIDAEE----------KMHGDFLRL--EHIEG------------YLELSAKTKTYF-A 218 (313)
Q Consensus 164 ~~~i~v~FViG~s~~~~~~~~~~I~~E~----------~~~gDIL~l--d~~Ds------------Y~nLt~Kt~~~f-~ 218 (313)
...|.+-|+++.+.. ++.....|+++. ..|+.|.++ ||.+. ....-.+.++-. +
T Consensus 54 ~~lIsLgfLv~d~~e-~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN 132 (269)
T PF03452_consen 54 HELISLGFLVSDSSE-FDNTLKILEAALKKLQSHGPESKRFRSITILRKDFGQQLSQDRSERHAFEVQRPRRRAMARARN 132 (269)
T ss_pred chheEEEEEcCCCch-hHHHHHHHHHHHHHHhccCcccCCcceEEEEcCCCcccccCchhhccchhhHHHHHHHHHHHHH
Confidence 345889999998873 334444455433 235555554 45432 111122222211 2
Q ss_pred HHh--h-cCCceEEEEeccceEEeHHHHHHHHhccCC---CCceEEEE
Q 021371 219 TAV--S-MWDAEFYIKVDDDVHVNLATLGMTLAAHRT---KPRVYVGC 260 (313)
Q Consensus 219 wa~--~-~~~a~f~vKvDDDv~Vnl~~L~~~L~~~~~---~~~vY~G~ 260 (313)
|+. . .+..+|++-.|-|+.-.++.|++.|..++. -|++|-+.
T Consensus 133 ~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~~~kdIivPn~~~~~ 180 (269)
T PF03452_consen 133 FLLSSALGPWHSWVLWLDADIVETPPTLIQDLIAHDKDIIVPNCWRRY 180 (269)
T ss_pred HHHHhhcCCcccEEEEEecCcccCChHHHHHHHhCCCCEEccceeecc
Confidence 332 1 478999999999999999999999998763 24566554
No 50
>PHA01631 hypothetical protein
Probab=50.83 E-value=33 Score=30.63 Aligned_cols=62 Identities=19% Similarity=0.381 Sum_probs=39.4
Q ss_pred CCceEEEEeccceEEeHHHHHHHHhccCCCCceEEEEecCCcccccCCCccccCcccccCCCCCCCCcCcccceeeeCHH
Q 021371 224 WDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKD 303 (313)
Q Consensus 224 ~~a~f~vKvDDDv~Vnl~~L~~~L~~~~~~~~vY~G~~~~~pV~rd~~~Kw~~pe~~~fg~~~~~YP~y~~G~~YiiS~d 303 (313)
-+-+.++.+|.|++|+.-. .. .+.+.++.=|.. - ..+ |.+.+-+||.|--+.+.+.
T Consensus 70 i~DDi~~iIDSDV~ipn~~--~~----~~~~~v~t~CiP---A------------~~k---p~~~v~~FC~sTNf~~pr~ 125 (176)
T PHA01631 70 IEDDIIAIIDSDLIIPNLR--EI----IPNERVFTPCYW---L------------YYD---WANEIRPFCSGTNYIFRKS 125 (176)
T ss_pred CCccEEEEeccceEecCcc--cc----ccCCCccceeee---e------------eec---CCCcEEEEEccccEEeeHH
Confidence 4667888899999997542 11 223344444531 1 111 3345668999999999998
Q ss_pred HHHHHH
Q 021371 304 LATYIS 309 (313)
Q Consensus 304 la~~I~ 309 (313)
.+.++.
T Consensus 126 ~l~~l~ 131 (176)
T PHA01631 126 LLPYLE 131 (176)
T ss_pred HhHHHH
Confidence 887764
No 51
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=50.28 E-value=2e+02 Score=26.73 Aligned_cols=78 Identities=13% Similarity=0.050 Sum_probs=48.4
Q ss_pred cCCeEEEEEcccCCCCCCchHHHHHHHHhhcCCEEEeecc--ccCcchhHHHHHHHHHHhhcCCceEEEEeccceEEeHH
Q 021371 164 AKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHI--EGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLA 241 (313)
Q Consensus 164 ~~~i~v~FViG~s~~~~~~~~~~I~~E~~~~gDIL~ld~~--DsY~nLt~Kt~~~f~wa~~~~~a~f~vKvDDDv~Vnl~ 241 (313)
...+.+++|=+.+. ...+..|.+-.+.++-+..+... ...-+.+. +.+.++.....+|++..|.|+.+.++
T Consensus 32 ~~~~eiIvvd~~s~---~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~----arN~g~~~A~~d~l~flD~D~i~~~~ 104 (281)
T PF10111_consen 32 DPDFEIIVVDDGSS---DEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAK----ARNIGAKYARGDYLIFLDADCIPSPD 104 (281)
T ss_pred CCCEEEEEEECCCc---hhHHHHHHHHHhccCceEEEEcCCCCCCcCHHH----HHHHHHHHcCCCEEEEEcCCeeeCHH
Confidence 34567766665544 23445666666666655222222 11223222 23444444488999999999999999
Q ss_pred HHHHHHh
Q 021371 242 TLGMTLA 248 (313)
Q Consensus 242 ~L~~~L~ 248 (313)
.+...+.
T Consensus 105 ~i~~~~~ 111 (281)
T PF10111_consen 105 FIEKLLN 111 (281)
T ss_pred HHHHHHH
Confidence 9999998
No 52
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=49.81 E-value=66 Score=27.68 Aligned_cols=43 Identities=7% Similarity=0.114 Sum_probs=29.6
Q ss_pred HHHHhhcCCceEEEEeccceEEeHHHHHHHHhccCCCCceEEEE
Q 021371 217 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGC 260 (313)
Q Consensus 217 f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~~L~~~~~~~~vY~G~ 260 (313)
++.+......+|++.+|+|..+.++.|..++....... ..+|+
T Consensus 64 ~n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~-~~~~~ 106 (221)
T cd02522 64 MNAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRADG-AVAGA 106 (221)
T ss_pred HHHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcCC-cEEEE
Confidence 34444434579999999999999988888766654433 33443
No 53
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=47.84 E-value=59 Score=27.03 Aligned_cols=35 Identities=11% Similarity=0.141 Sum_probs=27.6
Q ss_pred HHHHhhcCCceEEEEeccceEEeHHHHHHHHhccC
Q 021371 217 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHR 251 (313)
Q Consensus 217 f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~~L~~~~ 251 (313)
++.+......+|++..|+|..+.++-|...+....
T Consensus 71 ~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~ 105 (182)
T cd06420 71 RNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELAE 105 (182)
T ss_pred HHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhC
Confidence 34444445789999999999999988888887763
No 54
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=46.33 E-value=2e+02 Score=25.12 Aligned_cols=34 Identities=18% Similarity=0.098 Sum_probs=26.6
Q ss_pred HHHHhhcCCceEEEEeccceEEeHHHHHHHHhcc
Q 021371 217 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAH 250 (313)
Q Consensus 217 f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~~L~~~ 250 (313)
++.+......+|++.+|+|+.++++.|...+...
T Consensus 79 ~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~ 112 (232)
T cd06437 79 LAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYF 112 (232)
T ss_pred HHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhh
Confidence 4555554588999999999999999988855433
No 55
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=44.85 E-value=2.6e+02 Score=25.91 Aligned_cols=62 Identities=13% Similarity=0.046 Sum_probs=38.9
Q ss_pred cCCEEEeeccccCcchhHHHHHHHHHHhhc-CCceEEEEeccceEEeHHHHHHHHhccCCCCc
Q 021371 194 HGDFLRLEHIEGYLELSAKTKTYFATAVSM-WDAEFYIKVDDDVHVNLATLGMTLAAHRTKPR 255 (313)
Q Consensus 194 ~gDIL~ld~~DsY~nLt~Kt~~~f~wa~~~-~~a~f~vKvDDDv~Vnl~~L~~~L~~~~~~~~ 255 (313)
+..-+.+-+.....|.-.|+-..-...... .+.+|++-.|.|+.+.++.|..++......++
T Consensus 63 ~~~~~~v~~~~r~~~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~ 125 (254)
T cd04191 63 LGAQGRIYYRRRRENTGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPR 125 (254)
T ss_pred hCCCCcEEEEEcCCCCCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCC
Confidence 333333333333444445555543333332 47799999999999999999999987643443
No 56
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=44.16 E-value=34 Score=24.85 Aligned_cols=18 Identities=17% Similarity=-0.025 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhhHhhhcc
Q 021371 20 WALFLCACSFCAGMSFTN 37 (313)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~ 37 (313)
+..++.++||++|++++.
T Consensus 19 pl~l~il~~f~~G~llg~ 36 (68)
T PF06305_consen 19 PLGLLILIAFLLGALLGW 36 (68)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 456677788888888765
No 57
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=44.07 E-value=2.3e+02 Score=25.00 Aligned_cols=35 Identities=11% Similarity=0.200 Sum_probs=26.9
Q ss_pred HHHHhhcCCceEEEEeccceEEeHHHHHHHHhccC
Q 021371 217 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHR 251 (313)
Q Consensus 217 f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~~L~~~~ 251 (313)
++.+......+|++.+|+|+.+.++-|..++....
T Consensus 101 ~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~ 135 (251)
T cd06439 101 LNRALALATGEIVVFTDANALLDPDALRLLVRHFA 135 (251)
T ss_pred HHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhc
Confidence 44444434569999999999999888888887764
No 58
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=42.02 E-value=2.3e+02 Score=24.52 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=31.2
Q ss_pred HHHHhhcCCceEEEEeccceEEeHHHHHHHHhccCCCCceEEEE
Q 021371 217 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGC 260 (313)
Q Consensus 217 f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~~L~~~~~~~~vY~G~ 260 (313)
.+.+......+|++.+|+|..+.++.|...+......+...+|+
T Consensus 76 ~N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~ 119 (219)
T cd06913 76 KNQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGC 119 (219)
T ss_pred HHHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEE
Confidence 34444445789999999999999988877666554444455665
No 59
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=40.88 E-value=2.6e+02 Score=24.77 Aligned_cols=36 Identities=17% Similarity=0.141 Sum_probs=28.8
Q ss_pred HHHHHhhcCCceEEEEeccceEEeHHHHHHHHhccC
Q 021371 216 YFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHR 251 (313)
Q Consensus 216 ~f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~~L~~~~ 251 (313)
.++++......+|++.+|+|+.+.++.|...+....
T Consensus 75 a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~ 110 (241)
T cd06427 75 ACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFA 110 (241)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHH
Confidence 345555445679999999999999999999888764
No 60
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=36.04 E-value=1.3e+02 Score=26.71 Aligned_cols=77 Identities=16% Similarity=0.150 Sum_probs=45.7
Q ss_pred eEEEEeccceEEeHHHHHHHHhccCCCC---ceEEEEecC------CcccccCCCccccCcccccCC-CCCCC-CcCccc
Q 021371 227 EFYIKVDDDVHVNLATLGMTLAAHRTKP---RVYVGCMKS------GPVLARKGVKYYEPEYWKFGE-IGNKY-FRHATG 295 (313)
Q Consensus 227 ~f~vKvDDDv~Vnl~~L~~~L~~~~~~~---~vY~G~~~~------~pV~rd~~~Kw~~pe~~~fg~-~~~~Y-P~y~~G 295 (313)
+.++-+.+|++.+. .+..+|+.|..+. .+.++.... |.+..+..+ .+-+ |.+ |.... ..++.+
T Consensus 104 ~~~lv~~gD~i~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~--~V~~---~~EKP~~~~~~~~~~~ 177 (248)
T PF00483_consen 104 EDFLVLNGDIIFDD-DLQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEVDEDG--RVIR---IVEKPDNPNASNLINT 177 (248)
T ss_dssp SEEEEETTEEEEST-THHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEEETTS--EEEE---EEESCSSHSHSSEEEE
T ss_pred ceEEEEeccccccc-hhhhHHHhhhccccccccccccccccccccceeeeeccce--eEEE---EeccCcccccceeccC
Confidence 45777888998887 7777777765333 244444321 233333322 2211 111 22223 457899
Q ss_pred ceeeeCHHHHHHHH
Q 021371 296 QLYALSKDLATYIS 309 (313)
Q Consensus 296 ~~YiiS~dla~~I~ 309 (313)
+.|+++.++...+.
T Consensus 178 G~Y~~~~~~~~~~~ 191 (248)
T PF00483_consen 178 GIYIFKPEIFDFLL 191 (248)
T ss_dssp EEEEEETHHHHHHH
T ss_pred ceEEEcchHHHHHh
Confidence 99999999998884
No 61
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=34.42 E-value=4.2e+02 Score=28.65 Aligned_cols=126 Identities=11% Similarity=-0.002 Sum_probs=67.2
Q ss_pred CCceeEEEEEeCCCCCHH-HHHHHHHHhhhcchhhhhhhccCCeEEEEEcccCCCCCCch--HHHHHHHHhhcCCEEEee
Q 021371 125 KRKYFMVIGINTAFSSRK-RRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGIL--DKAIDAEEKMHGDFLRLE 201 (313)
Q Consensus 125 ~~~~~lvI~V~S~~~~~~-rR~aIR~TW~~~~~~~~~l~~~~~i~v~FViG~s~~~~~~~--~~~I~~E~~~~gDIL~ld 201 (313)
+..+.+.|+|.+.-+..+ -+..|+.+..+... ......+.+ ||+.-+.+++-.. ..++.+=.++|++-..+-
T Consensus 121 ~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~----~~~~~~~e~-~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~ 195 (691)
T PRK05454 121 PPEARTAILMPIYNEDPARVFAGLRAMYESLAA----TGHGAHFDF-FILSDTRDPDIAAAEEAAWLELRAELGGEGRIF 195 (691)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHHHh----cCCCCCEEE-EEEECCCChhHHHHHHHHHHHHHHhcCCCCcEE
Confidence 444556666666555543 34677777754321 001123555 8886554321000 111222233443211122
Q ss_pred ccccCcchhHHHHHHHHHHhh-cCCceEEEEeccceEEeHHHHHHHHhccCCCCc
Q 021371 202 HIEGYLELSAKTKTYFATAVS-MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPR 255 (313)
Q Consensus 202 ~~DsY~nLt~Kt~~~f~wa~~-~~~a~f~vKvDDDv~Vnl~~L~~~L~~~~~~~~ 255 (313)
+.....|.-.|.-..-.+... ..+.+|++-.|-|+.+..+.|..++.....+|+
T Consensus 196 yr~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~ 250 (691)
T PRK05454 196 YRRRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPR 250 (691)
T ss_pred EEECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcC
Confidence 222334445576655555433 257799999999999999999999876543443
No 62
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=33.32 E-value=2.8e+02 Score=27.48 Aligned_cols=68 Identities=16% Similarity=0.085 Sum_probs=46.6
Q ss_pred hHHHHHHHHhhcCCEEEeec--cccC---cchhHHHHHHHHHHhh-cCCceEEEEeccceEEeHHHHHHHHhcc
Q 021371 183 LDKAIDAEEKMHGDFLRLEH--IEGY---LELSAKTKTYFATAVS-MWDAEFYIKVDDDVHVNLATLGMTLAAH 250 (313)
Q Consensus 183 ~~~~I~~E~~~~gDIL~ld~--~DsY---~nLt~Kt~~~f~wa~~-~~~a~f~vKvDDDv~Vnl~~L~~~L~~~ 250 (313)
...-|.+=.++|-++|-+-+ +-.. .....+...++.|+.+ .+..+|++|+|.|-..+...|....-.-
T Consensus 127 t~Eiil~fckkyP~fip~~Ypy~v~~~n~~~~~n~l~~YYNy~ls~ipk~~w~iKID~DhIy~~~KL~ksfY~p 200 (347)
T PF06306_consen 127 TEEIILEFCKKYPSFIPIKYPYEVIIKNPKSEENSLYNYYNYVLSFIPKNEWAIKIDADHIYDTKKLYKSFYIP 200 (347)
T ss_pred HHHHHHHHHHhCcccccccCcchhhccCCchhhhhhhhhhhhhhcccccceEEEEeccceeecHHHHhhhheee
Confidence 34445566788999887632 1111 1223355567788776 4789999999999999999998765543
No 63
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=33.27 E-value=3.5e+02 Score=24.05 Aligned_cols=87 Identities=17% Similarity=0.179 Sum_probs=49.2
Q ss_pred CeEEEEEcccCCCCCCchHHHHHHHHhhcCC--EEEeeccccCcchhHHHHHHHHHHhhcCCceEEEEeccceEEeHHHH
Q 021371 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGD--FLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATL 243 (313)
Q Consensus 166 ~i~v~FViG~s~~~~~~~~~~I~~E~~~~gD--IL~ld~~DsY~nLt~Kt~~~f~wa~~~~~a~f~vKvDDDv~Vnl~~L 243 (313)
.+.+++|-..|.+ .....+.+-.++|++ +......... ... .+++.+...-..+|++.+|+|..++++.|
T Consensus 40 ~~eiivvDdgS~D---~t~~i~~~~~~~~~~~~v~~~~~~~n~-G~~----~a~n~g~~~a~g~~i~~lD~D~~~~~~~l 111 (243)
T PLN02726 40 DFEIIVVDDGSPD---GTQDVVKQLQKVYGEDRILLRPRPGKL-GLG----TAYIHGLKHASGDFVVIMDADLSHHPKYL 111 (243)
T ss_pred CeEEEEEeCCCCC---CHHHHHHHHHHhcCCCcEEEEecCCCC-CHH----HHHHHHHHHcCCCEEEEEcCCCCCCHHHH
Confidence 4667667655542 233333333345543 3333332221 222 23344443346799999999999999998
Q ss_pred HHHHhccC-CCCceEEEE
Q 021371 244 GMTLAAHR-TKPRVYVGC 260 (313)
Q Consensus 244 ~~~L~~~~-~~~~vY~G~ 260 (313)
..++.... ....+.+|.
T Consensus 112 ~~l~~~~~~~~~~~v~g~ 129 (243)
T PLN02726 112 PSFIKKQRETGADIVTGT 129 (243)
T ss_pred HHHHHHHHhcCCcEEEEc
Confidence 88887653 234566665
No 64
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=31.76 E-value=2.1e+02 Score=27.85 Aligned_cols=81 Identities=10% Similarity=0.079 Sum_probs=57.6
Q ss_pred ccCCeEEEEEcccCCCCCCchHHHHHHHHhhcCCEEEeeccc--cCcchhHHHHHHHHHHhhcCCceEEEEeccceEEeH
Q 021371 163 EAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIE--GYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNL 240 (313)
Q Consensus 163 ~~~~i~v~FViG~s~~~~~~~~~~I~~E~~~~gDIL~ld~~D--sY~nLt~Kt~~~f~wa~~~~~a~f~vKvDDDv~Vnl 240 (313)
...++.+.|+=|.+ ..++.|..=.....-++.+++.+ .+..-+.=...+..|+....+..+++..|-|+|.-.
T Consensus 35 s~~~~~vi~~~~~~-----~~d~~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~ 109 (346)
T COG4092 35 SSDITMVICLRAHE-----VMDRLIRSYIDPMPRVLYLDFGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGSS 109 (346)
T ss_pred ccccEEEEEEecch-----hHHHHHHHHhccccceEEEecCCCccccchhhhhhccchhhhccccccEEEEEeccccccH
Confidence 34567777777654 46777777777777788888654 333322223345667766668999999999999999
Q ss_pred HHHHHHHh
Q 021371 241 ATLGMTLA 248 (313)
Q Consensus 241 ~~L~~~L~ 248 (313)
++.+..|.
T Consensus 110 dnF~k~l~ 117 (346)
T COG4092 110 DNFAKMLS 117 (346)
T ss_pred HHHHHHHH
Confidence 99999883
No 65
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=31.03 E-value=43 Score=24.82 Aligned_cols=16 Identities=25% Similarity=0.252 Sum_probs=13.3
Q ss_pred HHHHHHHHHhhHhhhc
Q 021371 21 ALFLCACSFCAGMSFT 36 (313)
Q Consensus 21 ~~~~~~~~~~~~~~~~ 36 (313)
++++|++|+.+|.+++
T Consensus 42 ~~~~c~~S~~lG~~~~ 57 (60)
T PF06072_consen 42 VVALCVLSGGLGALVA 57 (60)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3588999999998876
No 66
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=30.20 E-value=2.5e+02 Score=21.37 Aligned_cols=34 Identities=15% Similarity=0.044 Sum_probs=25.3
Q ss_pred HHHHhhcCCceEEEEeccceEEeHHHHHHHHhcc
Q 021371 217 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAH 250 (313)
Q Consensus 217 f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~~L~~~ 250 (313)
+..+....+.+|++.+|+|..+.++.+...+..+
T Consensus 69 ~~~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~~ 102 (156)
T cd00761 69 RNAGLKAARGEYILFLDADDLLLPDWLERLVAEL 102 (156)
T ss_pred HHHHHHHhcCCEEEEECCCCccCccHHHHHHHHH
Confidence 3444443379999999999999999888874443
No 67
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=27.70 E-value=69 Score=19.32 Aligned_cols=19 Identities=16% Similarity=0.448 Sum_probs=14.3
Q ss_pred HHHHHHhHHHHhhhHHHhh
Q 021371 83 IQSQDKRLDGLKTKITAVR 101 (313)
Q Consensus 83 ~~~~~~~~~~le~el~~~~ 101 (313)
+..+..+|+.||-+|+..+
T Consensus 3 ~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSECR 21 (23)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3467788899998888654
No 68
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=27.33 E-value=3.2e+02 Score=26.37 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=17.1
Q ss_pred CCceEEEEeccceEEeHHHHHH
Q 021371 224 WDAEFYIKVDDDVHVNLATLGM 245 (313)
Q Consensus 224 ~~a~f~vKvDDDv~Vnl~~L~~ 245 (313)
..++||+-..|||..-..-+..
T Consensus 168 ~~~~YyL~LEDDVia~~~f~~~ 189 (297)
T PF04666_consen 168 NLGDYYLQLEDDVIAAPGFLSR 189 (297)
T ss_pred hcCCeEEEecCCeEechhHHHH
Confidence 4688999999999998754333
No 69
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=24.86 E-value=99 Score=27.89 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=27.2
Q ss_pred cCCceEEEEeccceEEeHHHHHHHHhccCCCCc
Q 021371 223 MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPR 255 (313)
Q Consensus 223 ~~~a~f~vKvDDDv~Vnl~~L~~~L~~~~~~~~ 255 (313)
..+.+|++.+|.|+.+.++.|..++......++
T Consensus 71 ~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~ 103 (244)
T cd04190 71 PDDPEFILLVDADTKFDPDSIVQLYKAMDKDPE 103 (244)
T ss_pred cCCCCEEEEECCCCcCCHhHHHHHHHHHHhCCC
Confidence 358899999999999999999888877644444
No 70
>smart00786 SHR3_chaperone ER membrane protein SH3. This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) PUBMED:15623581. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=24.73 E-value=44 Score=30.50 Aligned_cols=29 Identities=28% Similarity=0.441 Sum_probs=23.2
Q ss_pred chhHHHHHHHHHHhhHhhhcc------ccCCCCcc
Q 021371 17 PRKWALFLCACSFCAGMSFTN------RMWMMPES 45 (313)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~ 45 (313)
+-...+++|-.||+.|++|++ =||+.+.+
T Consensus 6 ~~~t~lIl~~tsF~lGvlf~~~pyD~~~Lw~~~~t 40 (196)
T smart00786 6 SFGTALIIGSTSFFLGILFANFPYDYPLLWSPDPT 40 (196)
T ss_pred ccccchhhhhHHHHHHHHHhcCccccchhcCCCCC
Confidence 334578999999999999998 46877654
No 71
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=24.27 E-value=31 Score=31.45 Aligned_cols=33 Identities=27% Similarity=0.599 Sum_probs=24.7
Q ss_pred cchhHHHHHHHHHHhhHhhhcc------ccCCCCcccch
Q 021371 16 IPRKWALFLCACSFCAGMSFTN------RMWMMPESKGV 48 (313)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~ 48 (313)
++=...+++|-.||+.|++|++ =||+.+.+.+.
T Consensus 5 ~~~~t~lIi~stsF~LG~lf~~~~yD~~~Lw~~~~t~~~ 43 (196)
T PF08229_consen 5 CSFGTGLIICSTSFLLGVLFSNWPYDYPTLWSSPPTDEA 43 (196)
T ss_pred cceeeeeehHhhHHHHHHHHHcccchhHHhcCCCCCHHH
Confidence 3444568999999999999998 46887665333
No 72
>PF07507 WavE: WavE lipopolysaccharide synthesis; InterPro: IPR011122 These proteins are encoded by putative wav gene clusters, which are responsible for the synthesis of the core oligosaccharide (OS) region of Vibrio cholerae lipopolysaccharide [].
Probab=23.86 E-value=1.3e+02 Score=29.36 Aligned_cols=64 Identities=13% Similarity=0.186 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhcCCceEEEEeccceEEeHHHHHHHHhccCCC--------CceEEEEecCCcccccCC----CccccCcc
Q 021371 212 KTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTK--------PRVYVGCMKSGPVLARKG----VKYYEPEY 279 (313)
Q Consensus 212 Kt~~~f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~~L~~~~~~--------~~vY~G~~~~~pV~rd~~----~Kw~~pe~ 279 (313)
=|.++++-| ..+|++|+=-|.++-=+++++++...... +|+.+..+. .+++. -.+|.+++
T Consensus 86 St~aGL~~~----~~~Ya~KlRtD~~l~~~~~l~~~~~~~~~~~~~~~~~~RIv~~~~f----~~~~~~~~~~pfh~SD~ 157 (311)
T PF07507_consen 86 STLAGLKAA----KTKYAMKLRTDNRLTGNNFLDLYEKYPDRESNYSFFNERIVTSSFF----TRDPRRGEPVPFHISDF 157 (311)
T ss_pred HHHHHHHHh----CCceEEEEcccccccchHHHHHHHHhcccCcccccccCcEEecccc----ccCcccCccccccHhhH
Confidence 355666665 35999999999999999999998876432 233332211 12222 25777888
Q ss_pred cccC
Q 021371 280 WKFG 283 (313)
Q Consensus 280 ~~fg 283 (313)
++||
T Consensus 158 f~FG 161 (311)
T PF07507_consen 158 FYFG 161 (311)
T ss_pred HHhc
Confidence 8888
No 73
>PF03742 PetN: PetN ; InterPro: IPR005497 PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or stability. It is found in bacteria and plants. Cytochrome b6-f complex is composed of 4 large subunits: cytochrome b6, subunit IV (17 kDa polypeptide, petD), cytochrome f and the Rieske protein, as well as 4 small subunits: petG, petL, petM and petN. The complex functions as a dimer. The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI) [].; GO: 0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity, 0017004 cytochrome complex assembly, 0009512 cytochrome b6f complex; PDB: 2ZT9_H 2D2C_H 2E76_H 1VF5_U 2E75_H 2E74_H.
Probab=23.64 E-value=77 Score=20.17 Aligned_cols=23 Identities=17% Similarity=0.452 Sum_probs=19.7
Q ss_pred cchhHHHHHHHHHHhhHhhhccc
Q 021371 16 IPRKWALFLCACSFCAGMSFTNR 38 (313)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~r 38 (313)
++--|+.++.+|+|-..+.|=||
T Consensus 4 v~lgWaal~~~ftfSlalVVWGR 26 (29)
T PF03742_consen 4 VSLGWAALMVVFTFSLALVVWGR 26 (29)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHhccceeEEEec
Confidence 45569999999999999998887
No 74
>PF09964 DUF2198: Uncharacterized protein conserved in bacteria (DUF2198); InterPro: IPR019242 This family of various hypothetical archaeal proteins has no known function.
Probab=22.64 E-value=53 Score=25.42 Aligned_cols=22 Identities=32% Similarity=0.715 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHhhHhhhcccc
Q 021371 18 RKWALFLCACSFCAGMSFTNRM 39 (313)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~r~ 39 (313)
.-|++++-++|..||.+++.+|
T Consensus 46 ~~~ii~iD~~Sl~aGf~~a~~m 67 (74)
T PF09964_consen 46 TWWIIFIDAVSLTAGFLYAKKM 67 (74)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 4478999999999999999886
No 75
>PRK10018 putative glycosyl transferase; Provisional
Probab=21.71 E-value=6.7e+02 Score=23.50 Aligned_cols=34 Identities=24% Similarity=0.269 Sum_probs=26.3
Q ss_pred HHHHhhcCCceEEEEeccceEEeHHHHHHHHhcc
Q 021371 217 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAH 250 (313)
Q Consensus 217 f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~~L~~~ 250 (313)
.+.+......+|++..|+|..+.++.|..++...
T Consensus 77 ~N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~ 110 (279)
T PRK10018 77 RNQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHK 110 (279)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCccHHHHHHHHH
Confidence 3444444578999999999999999888777654
No 76
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=21.08 E-value=1.4e+02 Score=27.74 Aligned_cols=38 Identities=24% Similarity=0.373 Sum_probs=28.4
Q ss_pred CCceEEEEeccceEEeHHHHHHHHhccCCCCceEEEEe
Q 021371 224 WDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCM 261 (313)
Q Consensus 224 ~~a~f~vKvDDDv~Vnl~~L~~~L~~~~~~~~vY~G~~ 261 (313)
-..+-++-+|||+.++.+.|.-.+..-+..|.-.+|..
T Consensus 74 i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~ 111 (247)
T PF09258_consen 74 IETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFP 111 (247)
T ss_dssp --SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-
T ss_pred cCcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCc
Confidence 45778999999999999999887777666676678864
No 77
>PF11772 EpuA: DNA-directed RNA polymerase subunit beta; InterPro: IPR024596 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the short 60-residue long bacterial family that is the beta subunit of the DNA-directed RNA polymerase, likely to be 2.7.7.6 from EC It is membrane-bound and is referred to by the name EpuA.
Probab=20.57 E-value=81 Score=22.21 Aligned_cols=16 Identities=19% Similarity=0.397 Sum_probs=13.5
Q ss_pred HHHHHHHHHhhHhhhc
Q 021371 21 ALFLCACSFCAGMSFT 36 (313)
Q Consensus 21 ~~~~~~~~~~~~~~~~ 36 (313)
+++||+++|.+|+.+-
T Consensus 4 V~lL~~~~l~iGlmIG 19 (47)
T PF11772_consen 4 VLLLAILALAIGLMIG 19 (47)
T ss_pred HHHHHHHHHHHHHHee
Confidence 6789999999998764
Done!