Query 021371
Match_columns 313
No_of_seqs 214 out of 1247
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 03:10:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021371.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021371hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j0a_A Beta-1,3-N-acetylglucos 99.8 9E-19 3.1E-23 163.8 13.1 157 126-310 11-172 (280)
2 1qg8_A Protein (spore coat pol 90.5 4.3 0.00015 34.7 12.7 130 166-309 30-172 (255)
3 1xhb_A Polypeptide N-acetylgal 85.4 13 0.00044 35.5 13.5 81 167-254 62-143 (472)
4 4fix_A UDP-galactofuranosyl tr 83.5 30 0.001 35.3 15.9 37 215-251 258-294 (657)
5 2d7i_A Polypeptide N-acetylgal 81.4 26 0.00089 34.7 14.3 85 168-259 146-230 (570)
6 3bcv_A Putative glycosyltransf 79.6 19 0.00063 30.2 11.0 85 166-259 34-119 (240)
7 2ffu_A Ppgalnact-2, polypeptid 78.2 32 0.0011 33.1 13.4 82 167-259 99-180 (501)
8 2z86_A Chondroitin synthase; G 67.0 96 0.0033 30.4 14.1 35 217-251 166-200 (625)
9 2z86_A Chondroitin synthase; G 63.1 65 0.0022 31.6 12.0 76 166-250 404-479 (625)
10 2lnd_A De novo designed protei 59.4 12 0.00043 28.5 4.5 74 134-222 31-104 (112)
11 2bo4_A Mannosylglycerate synth 43.4 48 0.0017 31.6 7.0 142 166-309 28-178 (397)
12 1fo8_A Alpha-1,3-mannosyl-glyc 39.7 59 0.002 30.4 6.9 85 216-308 90-177 (343)
13 3ckj_A Putative uncharacterize 35.7 15 0.0005 33.5 1.9 44 218-261 124-170 (329)
14 2z5i_A TM, general control pro 31.9 58 0.002 22.3 4.0 22 81-102 12-33 (52)
15 2akf_A Coronin-1A; coiled coil 30.4 83 0.0028 19.2 3.9 25 75-99 7-31 (32)
16 4dzn_A Coiled-coil peptide CC- 29.5 68 0.0023 19.5 3.5 28 75-102 3-30 (33)
17 1vf5_H Protein PET N; photosyn 24.5 45 0.0016 20.3 2.0 23 16-38 4-26 (29)
18 4hg6_A Cellulose synthase subu 22.3 2.4E+02 0.0081 29.1 8.4 39 211-250 225-263 (802)
19 2c0n_A A197; thermophil protei 21.4 4.1E+02 0.014 23.2 9.4 113 184-309 14-132 (203)
20 3mud_A DNA repair protein XRCC 21.0 82 0.0028 27.0 3.8 36 68-103 121-157 (175)
21 1q90_N Cytochrome B6F complex 20.3 46 0.0016 20.6 1.5 23 16-38 6-28 (31)
No 1
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*
Probab=99.78 E-value=9e-19 Score=163.76 Aligned_cols=157 Identities=19% Similarity=0.252 Sum_probs=103.5
Q ss_pred CceeEEEEEeCCCCCH-HHHHHHHHHhhhcchhhhhhhccCCeEEEEEcccCCCCCCchHHHHHHHHhhcCCEEEeecc-
Q 021371 126 RKYFMVIGINTAFSSR-KRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHI- 203 (313)
Q Consensus 126 ~~~~lvI~V~S~~~~~-~rR~aIR~TW~~~~~~~~~l~~~~~i~v~FViG~s~~~~~~~~~~I~~E~~~~gDIL~ld~~- 203 (313)
..-.|+|+|+|++.+. .|+.+||+||++.... . .||++... +..+... ..++++..++.
T Consensus 11 ~~~~I~~~V~T~~~~~~~R~~~I~~TW~~~~~~---------~--~fifsd~~------d~~l~~~--~~~~~~~~~~~~ 71 (280)
T 2j0a_A 11 QLGDIFIAVKTTWAFHRSRLDLLLDTWVSRIRQ---------Q--TFIFTDSP------DERLQER--LGPHLVVTQCSA 71 (280)
T ss_dssp CGGGEEEEEECCGGGTTTTHHHHHHTGGGGSGG---------G--EEEEESSC------CHHHHHH--HGGGEEECCC--
T ss_pred CcccEEEEEECcHHHHHHHHHHHHHHHhccCCC---------c--eEEEcCCC------ccccccc--ccccceeccccc
Confidence 3456789999999855 6889999999986531 1 24333222 2223322 35678887764
Q ss_pred -ccCcchhHHHHHHHHHHhhcCCceEEEEeccceEEeHHHHHHHHhccCCCCceEEEEecC-CcccccCCCccccCcccc
Q 021371 204 -EGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKS-GPVLARKGVKYYEPEYWK 281 (313)
Q Consensus 204 -DsY~nLt~Kt~~~f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~~L~~~~~~~~vY~G~~~~-~pV~rd~~~Kw~~pe~~~ 281 (313)
+++.+++.|+...+++.. +++++|++|+|||+||++++|..+|..+++...+|+|.... .|+. .+++.|.+..
T Consensus 72 ~~~~~~l~~K~~~~~~~~l-~~~~~Wf~~~DDDtyv~~~nL~~~L~~~d~~~~~YiG~~~~~~~~~----~~~~~~~~~~ 146 (280)
T 2j0a_A 72 EHSHPALSCKMAAEFDAFL-VSGLRWFCHVDDDNYVNPKALLQLLKTFPQDRDVYVGKPSLNRPIH----ASELQSKQRT 146 (280)
T ss_dssp -----CCCHHHHHHHHHHH-HHTCSEEEEEETTEEECHHHHHHHHTTSCTTSCCEEECEEC-------------------
T ss_pred cccccchHHHHHHHHHHHh-CCCCcEEEEeCCCcEEcHHHHHHHHHhCCCCCCEEEEEeccCcccc----ccccCccccc
Confidence 467899999999998654 36999999999999999999999999999988999998643 3432 2345554321
Q ss_pred cCCCCCCCCcCc-ccceeeeCHHHHHHHHh
Q 021371 282 FGEIGNKYFRHA-TGQLYALSKDLATYISI 310 (313)
Q Consensus 282 fg~~~~~YP~y~-~G~~YiiS~dla~~I~~ 310 (313)
+...| +|| +|+||+||+++++.|+.
T Consensus 147 ---~~~~~-~y~~GGaG~vlSr~~l~~l~~ 172 (280)
T 2j0a_A 147 ---KLVRF-WFATGGAGFCINRQLALKMVP 172 (280)
T ss_dssp -------C-CEECGGGCEEEEHHHHHHHHH
T ss_pred ---ccccc-CcccCCCEEEECHHHHHHHHH
Confidence 12234 577 46789999999999985
No 2
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=90.53 E-value=4.3 Score=34.72 Aligned_cols=130 Identities=8% Similarity=-0.084 Sum_probs=68.8
Q ss_pred CeEEEEEcccCCCCCCchHHHHHHHHhhcCCEEEeeccccC-----cchhHHHHHHHHHHhhcCCceEEEEeccceEEeH
Q 021371 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGY-----LELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNL 240 (313)
Q Consensus 166 ~i~v~FViG~s~~~~~~~~~~I~~E~~~~gDIL~ld~~DsY-----~nLt~Kt~~~f~wa~~~~~a~f~vKvDDDv~Vnl 240 (313)
.+.++.|-..|. +. ..++.++...+..|..+.....- .|.. .-..++.+....+.+|++.+|||.++.+
T Consensus 30 ~~eiivvDd~S~---d~-t~~~~~~~~~~~~i~~i~~~~~~~~~~~~n~G--~~~a~N~gi~~a~g~~i~~lD~Dd~~~~ 103 (255)
T 1qg8_A 30 DFELFIMDDNSN---EE-TLNVIRPFLNDNRVRFYQSDISGVKERTEKTR--YAALINQAIEMAEGEYITYATDDNIYMP 103 (255)
T ss_dssp CEEEEEEECSCC---HH-HHHHHGGGGGSTTEEEEECCCCSHHHHHSSCH--HHHHHHHHHHHCCCSEEEEEETTEEECT
T ss_pred ceEEEEEECCCC---ch-HHHHHHHHhhcCCEEEEecccccccccccccC--HHHHHHHHHHHcCCCEEEEeCCCCccCh
Confidence 456655554433 11 23344444334556555433110 2321 2234555555447899999999999998
Q ss_pred HHHHHHHhccC--CCCceEEEEec----C--CcccccCCCccccCcccccCCCCCCCCcCcccceeeeCHHHHHHHH
Q 021371 241 ATLGMTLAAHR--TKPRVYVGCMK----S--GPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYIS 309 (313)
Q Consensus 241 ~~L~~~L~~~~--~~~~vY~G~~~----~--~pV~rd~~~Kw~~pe~~~fg~~~~~YP~y~~G~~YiiS~dla~~I~ 309 (313)
+.|...+.... +...+..|.+. . +... ..+..|.. .+ ......++.|++.++.+++...+-
T Consensus 104 ~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~~-~~---~~~~~~~~~~~~~~~rr~~~~~~g 172 (255)
T 1qg8_A 104 DRLLKMVRELDTHPEKAVIYSASKTYHLNENRDIV----KETVRPAA-QV---TWNAPCAIDHCSVMHRYSVLEKVK 172 (255)
T ss_dssp THHHHHHHHHHHCTTCCEEEEEEEEEEEC---CEE----EEEEECCC-SC---BSCCTTTSCGGGEEEETHHHHHHH
T ss_pred HHHHHHHHHHHhCCCceEEEeceEEEEeCCCCcch----hhccCchH-HH---HHhhcCCCccceEEEEHHHHHhhc
Confidence 88877776653 33344444432 1 1111 11112211 00 112344577899999999988764
No 3
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=85.40 E-value=13 Score=35.47 Aligned_cols=81 Identities=12% Similarity=0.011 Sum_probs=47.6
Q ss_pred eEEEEEcccCCCCCCchHHHHHHHHhhcC-CEEEeeccccCcchhHHHHHHHHHHhhcCCceEEEEeccceEEeHHHHHH
Q 021371 167 IIIRFVIGHSATSGGILDKAIDAEEKMHG-DFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGM 245 (313)
Q Consensus 167 i~v~FViG~s~~~~~~~~~~I~~E~~~~g-DIL~ld~~DsY~nLt~Kt~~~f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~ 245 (313)
..++.|-..|. ++.....+++-.+.+. .+..+...+.. .+. .+...+...-..+|++..|+|+.++++-|..
T Consensus 62 ~EIIvVDd~S~--d~~t~~~l~~~~~~~~~~v~vi~~~~n~-G~~----~a~N~g~~~A~gd~i~flD~D~~~~p~~L~~ 134 (472)
T 1xhb_A 62 EEIVLVDDASE--RDFLKRPLESYVKKLKVPVHVIRMEQRS-GLI----RARLKGAAVSRGQVITFLDAHCECTAGWLEP 134 (472)
T ss_dssp EEEEEEECSCC--CGGGTHHHHHHHHSSSSCEEEEECSSCC-CHH----HHHHHHHHHCCSSEEEEEESSEEECTTCHHH
T ss_pred eEEEEEECCCC--cHHHHHHHHHHHHHCCCcEEEEECCCCC-ChH----HHHHHHHHhccCCeEEEECCCeEeCccHHHH
Confidence 34555554433 2234445555455666 46555554433 222 2334444434689999999999999888888
Q ss_pred HHhccCCCC
Q 021371 246 TLAAHRTKP 254 (313)
Q Consensus 246 ~L~~~~~~~ 254 (313)
++......+
T Consensus 135 ll~~~~~~~ 143 (472)
T 1xhb_A 135 LLARIKHDR 143 (472)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHHhCC
Confidence 777654333
No 4
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=83.49 E-value=30 Score=35.28 Aligned_cols=37 Identities=24% Similarity=0.306 Sum_probs=28.4
Q ss_pred HHHHHHhhcCCceEEEEeccceEEeHHHHHHHHhccC
Q 021371 215 TYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHR 251 (313)
Q Consensus 215 ~~f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~~L~~~~ 251 (313)
.+++.|....+++|++.+|||+.+.++.|..++....
T Consensus 258 ~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~ 294 (657)
T 4fix_A 258 RVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHR 294 (657)
T ss_dssp HHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHHH
Confidence 4555655434789999999999999988888776553
No 5
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=81.42 E-value=26 Score=34.68 Aligned_cols=85 Identities=15% Similarity=0.036 Sum_probs=49.0
Q ss_pred EEEEEcccCCCCCCchHHHHHHHHhhcCCEEEeeccccCcchhHHHHHHHHHHhhcCCceEEEEeccceEEeHHHHHHHH
Q 021371 168 IIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTL 247 (313)
Q Consensus 168 ~v~FViG~s~~~~~~~~~~I~~E~~~~gDIL~ld~~DsY~nLt~Kt~~~f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~~L 247 (313)
.|+.|-..|. ++.+...|++-.+.+..|..+...+.. .+.. +...+...-..+|++..|+|+.++++-|..++
T Consensus 146 EIIVVDDgS~--D~tl~~~l~~~~~~~~~v~vi~~~~n~-G~~~----A~N~G~~~A~gd~i~fLD~D~~~~p~~L~~ll 218 (570)
T 2d7i_A 146 EIVLVDDFSD--REHLKKPLEDYMALFPSVRILRTKKRE-GLIR----TRMLGASVATGDVITFLDSHCEANVNWLPPLL 218 (570)
T ss_dssp EEEEEECSCC--CGGGTHHHHHHHTTSTTEEEEECSSCC-CHHH----HHHHHHHHCCSSEEEECCSSEEECTTCSHHHH
T ss_pred EEEEEECCCC--cHHHHHHHHHHHHhCCeEEEEECCCCC-CHHH----HHHHHHHhcCCCEEEEEcCCccccccHHHHHH
Confidence 4555554443 223245555555666666666544332 3333 23333333367999999999999988777777
Q ss_pred hccCCCCceEEE
Q 021371 248 AAHRTKPRVYVG 259 (313)
Q Consensus 248 ~~~~~~~~vY~G 259 (313)
......+.+.++
T Consensus 219 ~~l~~~~~~vv~ 230 (570)
T 2d7i_A 219 DRIARNRKTIVC 230 (570)
T ss_dssp HHHHHCTTEEEE
T ss_pred HHHHhCCCEEEe
Confidence 665433444444
No 6
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=79.63 E-value=19 Score=30.22 Aligned_cols=85 Identities=12% Similarity=0.021 Sum_probs=49.2
Q ss_pred CeEEEEEcccCCCCCCchHHHHHHHHhhcCCEEEeeccccCcchhHHHHHHHHHHhhcCCceEEEEeccceEEeHHHHHH
Q 021371 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGM 245 (313)
Q Consensus 166 ~i~v~FViG~s~~~~~~~~~~I~~E~~~~gDIL~ld~~DsY~nLt~Kt~~~f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~ 245 (313)
.+.++.|-..|. +.....+++-.+++..|..+. .++ .... ...+.+......+|++.+|+|.++.++.|..
T Consensus 34 ~~eiIvvDd~S~---d~t~~~~~~~~~~~~~i~~i~-~~n-~G~~----~a~N~g~~~a~g~~i~~lD~Dd~~~~~~l~~ 104 (240)
T 3bcv_A 34 DIEIILIDDESP---DNCPKICDDYAAQYPNIKVIH-KKN-AGLG----MACNSGLDVATGEYVAFCDSDDYVDSDMYMT 104 (240)
T ss_dssp SEEEEEEECCCS---SSHHHHHHHHHHHCSSEEEEE-CCC-CCHH----HHHHHHHHHCCSSEEEECCTTCCCCTTHHHH
T ss_pred CeEEEEEECCCC---cCHHHHHHHHHhhCCCEEEEE-CCC-CChH----HHHHHHHHHcCCCEEEEECCCCcCCHHHHHH
Confidence 456666654443 233444444455666666664 222 1222 2344444434679999999999999888877
Q ss_pred HHhccCC-CCceEEE
Q 021371 246 TLAAHRT-KPRVYVG 259 (313)
Q Consensus 246 ~L~~~~~-~~~vY~G 259 (313)
++..... ...+.+|
T Consensus 105 l~~~~~~~~~~~v~~ 119 (240)
T 3bcv_A 105 MYNVAQKYTCDAVFT 119 (240)
T ss_dssp HHHHHHHHTCSEEEC
T ss_pred HHHHHHhcCCCEEEE
Confidence 7766532 3444443
No 7
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=78.21 E-value=32 Score=33.08 Aligned_cols=82 Identities=15% Similarity=-0.098 Sum_probs=46.7
Q ss_pred eEEEEEcccCCCCCCchHHHHHHHHhhcCCEEEeeccccCcchhHHHHHHHHHHhhcCCceEEEEeccceEEeHHHHHHH
Q 021371 167 IIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMT 246 (313)
Q Consensus 167 i~v~FViG~s~~~~~~~~~~I~~E~~~~gDIL~ld~~DsY~nLt~Kt~~~f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~~ 246 (313)
+.|++|-..|.+ +. +....+.+..+..+...+.. .+ ..+...+...-..+|++.+|+|+.+.++-|..+
T Consensus 99 ~EIIvVDDgS~D--~t----~~~~~~~~~~v~vi~~~~n~-G~----~~A~N~G~~~A~gd~i~flD~D~~~~p~~L~~l 167 (501)
T 2ffu_A 99 KEIILVDDYSND--PE----DGALLGKIEKVRVLRNDRRE-GL----MRSRVRGADAAQAKVLTFLDSHCECNEHWLEPL 167 (501)
T ss_dssp EEEEEEECSCSC--TH----HHHGGGGBTTEEEEECSSCC-HH----HHHHHHHHHHCCSSEEEECCSSEEECTTCHHHH
T ss_pred eeEEEEECCCCc--hH----HHHHHhcCCCEEEEECCCCc-CH----HHHHHHHHHhcCCCEEEEECCCcccCccHHHHH
Confidence 356556544432 22 22233456666665544432 22 233444444347899999999999998888887
Q ss_pred HhccCCCCceEEE
Q 021371 247 LAAHRTKPRVYVG 259 (313)
Q Consensus 247 L~~~~~~~~vY~G 259 (313)
+......+...++
T Consensus 168 l~~~~~~~~~vv~ 180 (501)
T 2ffu_A 168 LERVAEDRTRVVS 180 (501)
T ss_dssp HHHHHHCTTEEEE
T ss_pred HHHHHhCCCeEEE
Confidence 7765433333333
No 8
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=66.96 E-value=96 Score=30.39 Aligned_cols=35 Identities=9% Similarity=-0.057 Sum_probs=26.9
Q ss_pred HHHHhhcCCceEEEEeccceEEeHHHHHHHHhccC
Q 021371 217 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHR 251 (313)
Q Consensus 217 f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~~L~~~~ 251 (313)
++.+....+.+|++.+|+|+.+.++.|..++....
T Consensus 166 ~N~g~~~a~g~~v~~lD~D~~~~~~~l~~~~~~~~ 200 (625)
T 2z86_A 166 RNLGLRAAKYNYVAILDCDMAPNPLWVQSYMELLA 200 (625)
T ss_dssp HHHHHHHCCSSEEEEECTTEEECTTHHHHHHHHHH
T ss_pred HHHHHHhCCcCEEEEECCCCCCCHHHHHHHHHHHh
Confidence 44444434789999999999999888888777654
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=63.08 E-value=65 Score=31.65 Aligned_cols=76 Identities=11% Similarity=0.061 Sum_probs=44.6
Q ss_pred CeEEEEEcccCCCCCCchHHHHHHHHhhcCCEEEeeccccCcchhHHHHHHHHHHhhcCCceEEEEeccceEEeHHHHHH
Q 021371 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGM 245 (313)
Q Consensus 166 ~i~v~FViG~s~~~~~~~~~~I~~E~~~~gDIL~ld~~DsY~nLt~Kt~~~f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~ 245 (313)
.+.++.|-..|. +.....+.+-.+.+..+..+. .++ .... ..++.+......+|++..|+|.++.++.|..
T Consensus 404 ~~eiivvdd~S~---d~t~~~~~~~~~~~~~i~~~~-~~n-~G~~----~a~n~g~~~a~g~~i~~ld~D~~~~~~~l~~ 474 (625)
T 2z86_A 404 DLEVCICDDGST---DDTLRILQEHYANHPRVRFIS-QKN-KGIG----SASNTAVRLCRGFYIGQLDSDDFLEPDAVEL 474 (625)
T ss_dssp SEEEEEEEESCS---SSHHHHHHHHHTTCTTEEEEE-ECC-CCHH----HHHHHHHHHCCSSEEEECCTTCEECTTHHHH
T ss_pred CeEEEEEECcCC---hhHHHHHHHHHhhCCcEEEEe-CCC-CCHH----HHHHHHHHhcCCCEEEEECCCcccChhHHHH
Confidence 456666655443 223333443344555665554 221 1222 2344444434779999999999999988888
Q ss_pred HHhcc
Q 021371 246 TLAAH 250 (313)
Q Consensus 246 ~L~~~ 250 (313)
++...
T Consensus 475 ~~~~~ 479 (625)
T 2z86_A 475 CLDEF 479 (625)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 10
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=59.40 E-value=12 Score=28.48 Aligned_cols=74 Identities=26% Similarity=0.280 Sum_probs=45.9
Q ss_pred EeCCCCCHHHHHHHHHHhhhcchhhhhhhccCCeEEEEEcccCCCCCCchHHHHHHHHhhcCCEEEeeccccCcchhHHH
Q 021371 134 INTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKT 213 (313)
Q Consensus 134 V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~i~v~FViG~s~~~~~~~~~~I~~E~~~~gDIL~ld~~DsY~nLt~Kt 213 (313)
|.|+.++..-|+.|..-= ....-.++||-|.+.+. -.+.+.|+++-|=-.-+=-.-..++|+..+
T Consensus 31 irtatssqdirdiiksmk-----------dngkplvvfvngasqnd----vnefqneakkegvsydvlkstdpeeltqrv 95 (112)
T 2lnd_A 31 IRTATSSQDIRDIIKSMK-----------DNGKPLVVFVNGASQND----VNEFQNEAKKEGVSYDVLKSTDPEELTQRV 95 (112)
T ss_dssp EEEECSHHHHHHHHHHHT-----------TCCSCEEEEECSCCHHH----HHHHHHHHHHHTCEEEEEECCCHHHHHHHH
T ss_pred eeeccchhhHHHHHHHHH-----------hcCCeEEEEecCccccc----HHHHHHHHHhcCcchhhhccCCHHHHHHHH
Confidence 577778888888885421 12224577999987642 234566766655322111122345899999
Q ss_pred HHHHHHHhh
Q 021371 214 KTYFATAVS 222 (313)
Q Consensus 214 ~~~f~wa~~ 222 (313)
..+++.|-+
T Consensus 96 reflktags 104 (112)
T 2lnd_A 96 REFLKTAGS 104 (112)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHhccc
Confidence 999998754
No 11
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=43.37 E-value=48 Score=31.63 Aligned_cols=142 Identities=8% Similarity=-0.058 Sum_probs=73.4
Q ss_pred CeEEEEEcccCCCCCCchHHHHHHHHh-hcCC-EEEeeccc-c--CcchhHHHHHHHHHHhhcCCceEEEEeccce-EEe
Q 021371 166 GIIIRFVIGHSATSGGILDKAIDAEEK-MHGD-FLRLEHIE-G--YLELSAKTKTYFATAVSMWDAEFYIKVDDDV-HVN 239 (313)
Q Consensus 166 ~i~v~FViG~s~~~~~~~~~~I~~E~~-~~gD-IL~ld~~D-s--Y~nLt~Kt~~~f~wa~~~~~a~f~vKvDDDv-~Vn 239 (313)
.+.+++|=+.|.+.....-+++..+.. .++. ++...+.. . -.....=...+|+||....+.++++.+|-|. ..+
T Consensus 28 ~~EIIVVDDGStD~T~eia~~la~~~~~~~g~~vi~~~~~r~~~~n~GkG~Al~~G~~~Al~~a~gd~vv~mDADlq~~~ 107 (397)
T 2bo4_A 28 RVHEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITSFG 107 (397)
T ss_dssp TCCEEEEEESSCCHHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSHHHHHHHHHHHHHHHCCCSEEEECCTTCSSCC
T ss_pred CeEEEEEECcCCccHHHHHHHhhhhcccccCCeEEEEecccCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCCC
Confidence 356778887776321111222222433 3454 33333221 1 2355666778888886324789999999999 488
Q ss_pred HHHHHHHHhccCCCCceEEEEecC---CcccccCCCccccCcccccCCCCCCCCcCcccceeeeCHHHHHHHH
Q 021371 240 LATLGMTLAAHRTKPRVYVGCMKS---GPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYIS 309 (313)
Q Consensus 240 l~~L~~~L~~~~~~~~vY~G~~~~---~pV~rd~~~Kw~~pe~~~fg~~~~~YP~y~~G~~YiiS~dla~~I~ 309 (313)
+.-+..++......-++.+|.... +........++.... .+..-.....+...++.++++++++..+.
T Consensus 108 P~~i~~Ll~~l~~g~D~V~g~~~r~~~~~~~~~~~~~~ll~~--~~~~~~~~~i~dp~sG~~a~~R~vl~~l~ 178 (397)
T 2bo4_A 108 PDWITKAEEAADFGYGLVRHYFPRASTDAMITWMITRTGFAL--LWPHTELSWIEQPLGGELLMRREVAAMLY 178 (397)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCCTTSCHHHHHTHHHHHHH--HCTTSSGGGCSCTTCCCEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccccCCcHHHHHHHHHHHHH--HHHHhhccccccCCcccEEEeHHHHHHHh
Confidence 877777776543334566775321 111111111110000 01000001223345778899999999874
No 12
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=39.71 E-value=59 Score=30.44 Aligned_cols=85 Identities=13% Similarity=0.073 Sum_probs=45.0
Q ss_pred HHHHHhhcCCceEEEEeccceEEeHHHH---HHHHhccCCCCceEEEEecCCcccccCCCccccCcccccCCCCCCCCcC
Q 021371 216 YFATAVSMWDAEFYIKVDDDVHVNLATL---GMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEPEYWKFGEIGNKYFRH 292 (313)
Q Consensus 216 ~f~wa~~~~~a~f~vKvDDDv~Vnl~~L---~~~L~~~~~~~~vY~G~~~~~pV~rd~~~Kw~~pe~~~fg~~~~~YP~y 292 (313)
+++++......++++.+|||+.+.++=+ .+.|......+++++=+-.+.+....... -..+...++ -.|
T Consensus 90 al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~~~l~~y~~D~~I~~ISa~n~~g~~~~~~-~~~~~~lyr-------s~~ 161 (343)
T 1fo8_A 90 ALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADPSLWCVSAWNDNGKEQMVD-SSKPELLYR-------TDF 161 (343)
T ss_dssp HHHHHHTTSCCSEEEEEETTEEECTTHHHHHHHHHHHHHHCTTEEEEESCCTTCBGGGSC-TTCTTCEEE-------ESS
T ss_pred HHHHHHHhccCCEEEEEcCCCeECHHHHHHHHHHHHHhhcCCcEEEEecccCcccccccc-ccCcceEEe-------ecC
Confidence 4444443347999999999999998655 34444334456665432111111100000 011222221 123
Q ss_pred cccceeeeCHHHHHHH
Q 021371 293 ATGQLYALSKDLATYI 308 (313)
Q Consensus 293 ~~G~~YiiS~dla~~I 308 (313)
..|.|+++++++-+.+
T Consensus 162 f~~wGWa~wr~~W~e~ 177 (343)
T 1fo8_A 162 FPGLGWLLLAELWAEL 177 (343)
T ss_dssp CCCSSEEEEHHHHHHH
T ss_pred CCchhhhhcHHHHHHH
Confidence 4578899999887655
No 13
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=35.66 E-value=15 Score=33.48 Aligned_cols=44 Identities=7% Similarity=-0.001 Sum_probs=30.6
Q ss_pred HHHhhcCCceEEEEeccceE-EeHHHHHHHHhcc--CCCCceEEEEe
Q 021371 218 ATAVSMWDAEFYIKVDDDVH-VNLATLGMTLAAH--RTKPRVYVGCM 261 (313)
Q Consensus 218 ~wa~~~~~a~f~vKvDDDv~-Vnl~~L~~~L~~~--~~~~~vY~G~~ 261 (313)
+.+......+|++.+|+|.. +.++.|..++... .+.-.+.+|..
T Consensus 124 n~g~~~a~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~~~~~v~g~~ 170 (329)
T 3ckj_A 124 WRSLAASRGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVHLVKSFY 170 (329)
T ss_dssp HHHHHHCCCSEEEECCTTEESCCTTHHHHHHHHHHSCSSCCEEEEEE
T ss_pred HHHHHhCCCCEEEEECCCCCCcChHHHHHHHHHHHhCCCccEEEEEe
Confidence 33443346799999999999 8988887777653 23445666764
No 14
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=31.94 E-value=58 Score=22.26 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=18.6
Q ss_pred HHHHHHHHhHHHHhhhHHHhhh
Q 021371 81 QAIQSQDKRLDGLKTKITAVRA 102 (313)
Q Consensus 81 ~~~~~~~~~~~~le~el~~~~~ 102 (313)
..++.|+|+|+.||.+|..++.
T Consensus 12 RsV~KLek~ID~LEdeL~~eKe 33 (52)
T 2z5i_A 12 NEVARLKKLVDDLEDELYAQKL 33 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHH
Confidence 4677899999999999998774
No 15
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=30.35 E-value=83 Score=19.20 Aligned_cols=25 Identities=24% Similarity=0.411 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHhHHHHhhhHHH
Q 021371 75 KLAMVEQAIQSQDKRLDGLKTKITA 99 (313)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~le~el~~ 99 (313)
+|.+-.-.+|+|+++++.||.-..|
T Consensus 7 ~~r~l~~ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 7 DVRNLNAIVQKLQERLDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444789999999999976543
No 16
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=29.52 E-value=68 Score=19.49 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHhHHHHhhhHHHhhh
Q 021371 75 KLAMVEQAIQSQDKRLDGLKTKITAVRA 102 (313)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~le~el~~~~~ 102 (313)
|+.--.+-|-.|.|.|..|.-|+++.++
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333345677888999999999988764
No 17
>1vf5_H Protein PET N; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.27.1 PDB: 2d2c_H* 2e74_H* 2e75_H* 2e76_H* 2zt9_H*
Probab=24.46 E-value=45 Score=20.29 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=19.9
Q ss_pred cchhHHHHHHHHHHhhHhhhccc
Q 021371 16 IPRKWALFLCACSFCAGMSFTNR 38 (313)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~r 38 (313)
++--|+.++.+|+|-..+.|=||
T Consensus 4 vsl~WaalmvvftfSlslVVWGR 26 (29)
T 1vf5_H 4 DVLGWVALLVVFTWSIAMVVWGR 26 (29)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhheeeeEEEEec
Confidence 56679999999999999988776
No 18
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=22.26 E-value=2.4e+02 Score=29.13 Aligned_cols=39 Identities=21% Similarity=0.180 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhcCCceEEEEeccceEEeHHHHHHHHhcc
Q 021371 211 AKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAH 250 (313)
Q Consensus 211 ~Kt~~~f~wa~~~~~a~f~vKvDDDv~Vnl~~L~~~L~~~ 250 (313)
.|.. .++.+....+.+|++.+|+|+.+.++.|...+...
T Consensus 225 GKa~-alN~gl~~a~gd~Il~lDaD~~~~pd~L~~lv~~~ 263 (802)
T 4hg6_A 225 AKAG-NMSAALERLKGELVVVFDADHVPSRDFLARTVGYF 263 (802)
T ss_dssp HHHH-HHHHHHHHCCCSEEEECCTTEEECTTHHHHHHHHH
T ss_pred cchH-HHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHH
Confidence 4443 35555554588999999999999999888887765
No 19
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=21.39 E-value=4.1e+02 Score=23.16 Aligned_cols=113 Identities=11% Similarity=0.007 Sum_probs=64.4
Q ss_pred HHHHHHHHhhcCCEEEeeccccCcchhHHHHH-HHHHHhhcCCceEEEEeccc---eEEeHHHHHHHHhccCCCCceEEE
Q 021371 184 DKAIDAEEKMHGDFLRLEHIEGYLELSAKTKT-YFATAVSMWDAEFYIKVDDD---VHVNLATLGMTLAAHRTKPRVYVG 259 (313)
Q Consensus 184 ~~~I~~E~~~~gDIL~ld~~DsY~nLt~Kt~~-~f~wa~~~~~a~f~vKvDDD---v~Vnl~~L~~~L~~~~~~~~vY~G 259 (313)
.-.|+.+..+.|==+++...+ ++...... .+.-.....++++++.+|-| +-.+++.+..+|.. .-++.+|
T Consensus 14 ~l~l~~~l~~~gi~~~l~~~~---SlI~raRN~lv~~Fl~~~~~dhllfIDAD~~~I~FdPe~V~rLl~~---g~DVV~G 87 (203)
T 2c0n_A 14 RLPLIDFLVKNDIEYVILSRR---NHVAVQREIALDMFLEMKDYDTLAFLDEDVVPIEIDFQKVEAKFNE---GYDVVCG 87 (203)
T ss_dssp CHHHHHHHHHTTCCEEEECCC---SCHHHHHHHHHHHHHHCTTCCEEEEECTTEEEEECCHHHHHHHHHH---TCSEEEE
T ss_pred ehHHHHHHHhCCCeEEEEccc---cchHHHHHHHHHHHHhcCCCCEEEEEeCCCCccccCHHHHHHHHhC---CCCEEEE
Confidence 345666666665445555552 33222111 11112334689999999999 99999999999965 2468888
Q ss_pred Ee--cCCcccccCCCccccCcccccCCCCCCCCcCcccceeeeCHHHHHHHH
Q 021371 260 CM--KSGPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYIS 309 (313)
Q Consensus 260 ~~--~~~pV~rd~~~Kw~~pe~~~fg~~~~~YP~y~~G~~YiiS~dla~~I~ 309 (313)
.. ++..-. ....+.|.-. + ...=-.||.++.-++++.+...|.
T Consensus 88 sYp~K~~~~~-s~~a~~y~~~---i---~~~~V~d~~tGF~lIkR~V~e~L~ 132 (203)
T 2c0n_A 88 YYYLKTLRGY-SVYRKDWEKE---I---FDGEVNGCGLGFTFIKREFLEKIK 132 (203)
T ss_dssp ECBCTTSSSB-SEESSSBCSS---C---CCEECSEECSSEEEEEHHHHTTSC
T ss_pred EeeccCCCcc-chHHHHHHHh---c---cCceeeeccccEEEEhHHHHHHHh
Confidence 74 221100 0001111111 0 011124788899999999887763
No 20
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=21.00 E-value=82 Score=27.01 Aligned_cols=36 Identities=17% Similarity=0.322 Sum_probs=28.0
Q ss_pred ccchhhHhH-HHHHHHHHHHHHhHHHHhhhHHHhhhc
Q 021371 68 ESNNNTEKL-AMVEQAIQSQDKRLDGLKTKITAVRAE 103 (313)
Q Consensus 68 ~~~~~~~~~-~~~~~~~~~~~~~~~~le~el~~~~~~ 103 (313)
.|..++.++ ...+..++.|+++++.||.+|.+++..
T Consensus 121 ~paE~ireli~~AertV~kLqkeiD~LEDeL~~eKek 157 (175)
T 3mud_A 121 NPAEVIRELICYCLDTTAKNEKSIDDLEEKVAHAKEE 157 (175)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555 455668999999999999999988854
No 21
>1q90_N Cytochrome B6F complex subunit PETN; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.27.1
Probab=20.30 E-value=46 Score=20.58 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=19.8
Q ss_pred cchhHHHHHHHHHHhhHhhhccc
Q 021371 16 IPRKWALFLCACSFCAGMSFTNR 38 (313)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~r 38 (313)
++--|+.++.+|+|-..+.|=||
T Consensus 6 vsl~WaalmvvfTfSlslVVWGR 28 (31)
T 1q90_N 6 VQIGWAATCVMFSFSLSLVVWGR 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHhheeeEEEEEec
Confidence 45679999999999999988777
Done!