Query 021372
Match_columns 313
No_of_seqs 297 out of 1960
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 02:26:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021372.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021372hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4770 Acetyl/propionyl-CoA c 100.0 1.1E-50 2.3E-55 378.8 24.8 241 70-310 1-241 (645)
2 KOG0238 3-Methylcrotonyl-CoA c 100.0 1.2E-47 2.6E-52 353.2 20.2 237 74-310 1-237 (670)
3 COG0439 AccC Biotin carboxylas 100.0 4.4E-44 9.6E-49 337.6 27.7 242 70-311 1-242 (449)
4 PRK08654 pyruvate carboxylase 100.0 2.3E-42 5E-47 335.0 31.2 241 70-310 1-241 (499)
5 COG1038 PycA Pyruvate carboxyl 100.0 7.4E-43 1.6E-47 335.2 26.0 240 70-309 6-246 (1149)
6 PRK07178 pyruvate carboxylase 100.0 1.8E-40 3.8E-45 321.3 29.8 240 70-310 1-240 (472)
7 PRK12833 acetyl-CoA carboxylas 100.0 3.9E-40 8.4E-45 318.5 31.0 241 69-310 3-243 (467)
8 TIGR00514 accC acetyl-CoA carb 100.0 1.2E-39 2.6E-44 314.2 29.9 241 70-310 1-241 (449)
9 PRK08462 biotin carboxylase; V 100.0 1.9E-39 4.1E-44 312.6 30.7 241 70-310 3-243 (445)
10 PRK08463 acetyl-CoA carboxylas 100.0 3.4E-39 7.3E-44 312.6 30.7 240 70-310 1-241 (478)
11 PRK05586 biotin carboxylase; V 100.0 3.4E-39 7.3E-44 310.8 29.2 241 70-310 1-241 (447)
12 PRK08591 acetyl-CoA carboxylas 100.0 2.7E-38 6E-43 305.1 30.4 241 70-310 1-241 (451)
13 KOG0369 Pyruvate carboxylase [ 100.0 4.4E-39 9.6E-44 304.2 23.6 239 71-309 33-272 (1176)
14 PRK12999 pyruvate carboxylase; 100.0 1.5E-37 3.3E-42 323.9 31.0 241 70-310 4-245 (1146)
15 TIGR01235 pyruv_carbox pyruvat 100.0 3.3E-37 7.2E-42 320.0 29.9 238 73-310 1-241 (1143)
16 TIGR02712 urea_carbox urea car 100.0 2E-36 4.3E-41 317.1 30.2 239 71-310 1-239 (1201)
17 PRK06111 acetyl-CoA carboxylas 100.0 3.6E-35 7.8E-40 283.3 30.6 240 70-309 1-240 (450)
18 PLN02735 carbamoyl-phosphate s 100.0 7.3E-29 1.6E-33 259.1 23.9 209 71-293 574-805 (1102)
19 TIGR01369 CPSaseII_lrg carbamo 100.0 1.8E-28 3.9E-33 256.7 26.0 209 71-293 6-230 (1050)
20 TIGR01142 purT phosphoribosylg 100.0 4.5E-28 9.8E-33 229.0 25.7 205 73-293 1-206 (380)
21 PLN02735 carbamoyl-phosphate s 100.0 5.7E-28 1.2E-32 252.4 25.5 210 70-293 22-248 (1102)
22 PRK05294 carB carbamoyl phosph 100.0 1.3E-27 2.8E-32 250.9 26.4 211 70-294 6-232 (1066)
23 PRK12767 carbamoyl phosphate s 100.0 1E-27 2.2E-32 222.0 22.8 208 71-297 1-213 (326)
24 PRK09288 purT phosphoribosylgl 100.0 3.8E-27 8.2E-32 223.8 26.9 207 71-293 12-219 (395)
25 PRK12815 carB carbamoyl phosph 100.0 1.4E-27 3.1E-32 250.1 26.0 211 70-294 6-232 (1068)
26 PRK06019 phosphoribosylaminoim 100.0 3.6E-27 7.9E-32 222.1 25.6 199 71-294 2-201 (372)
27 KOG0368 Acetyl-CoA carboxylase 100.0 2.8E-28 6.1E-33 245.4 18.4 241 66-310 49-324 (2196)
28 TIGR01369 CPSaseII_lrg carbamo 100.0 6.5E-27 1.4E-31 245.0 25.3 207 71-293 554-771 (1050)
29 TIGR01161 purK phosphoribosyla 100.0 1.7E-26 3.6E-31 216.3 25.5 198 73-294 1-199 (352)
30 PRK07206 hypothetical protein; 100.0 1.2E-26 2.6E-31 221.9 23.5 208 70-292 1-216 (416)
31 PLN02948 phosphoribosylaminoim 100.0 2.6E-26 5.6E-31 226.1 25.9 206 68-295 19-225 (577)
32 PRK06395 phosphoribosylamine-- 100.0 2.5E-26 5.4E-31 219.9 24.5 208 70-293 1-209 (435)
33 TIGR00877 purD phosphoribosyla 100.0 4E-26 8.8E-31 218.7 25.4 208 72-293 1-209 (423)
34 PRK05294 carB carbamoyl phosph 99.9 2.3E-26 5.1E-31 241.5 24.9 202 71-287 554-766 (1066)
35 PRK06849 hypothetical protein; 99.9 8E-27 1.7E-31 221.2 19.4 208 71-293 4-213 (389)
36 PRK12815 carB carbamoyl phosph 99.9 2.4E-26 5.2E-31 240.8 23.8 199 71-287 555-764 (1068)
37 PRK13789 phosphoribosylamine-- 99.9 8.8E-26 1.9E-30 215.6 24.2 207 71-293 4-213 (426)
38 PRK00885 phosphoribosylamine-- 99.9 9.7E-26 2.1E-30 215.8 24.4 206 72-293 1-207 (420)
39 COG0458 CarB Carbamoylphosphat 99.9 2.5E-25 5.5E-30 204.0 21.3 212 72-302 6-223 (400)
40 PRK05784 phosphoribosylamine-- 99.9 2.6E-24 5.6E-29 207.8 25.9 204 72-291 1-222 (486)
41 PRK01372 ddl D-alanine--D-alan 99.9 2.7E-24 5.8E-29 197.3 20.8 180 69-286 2-191 (304)
42 PF15632 ATPgrasp_Ter: ATP-gra 99.9 3.6E-24 7.7E-29 195.8 20.3 214 76-299 3-231 (329)
43 PLN02257 phosphoribosylamine-- 99.9 1.3E-23 2.8E-28 201.0 24.9 203 75-293 1-207 (434)
44 PRK01966 ddl D-alanyl-alanine 99.9 1.5E-24 3.3E-29 201.4 17.2 211 70-295 2-228 (333)
45 PRK14569 D-alanyl-alanine synt 99.9 8E-24 1.7E-28 193.5 21.5 175 71-286 3-187 (296)
46 PRK02186 argininosuccinate lya 99.9 1.5E-23 3.2E-28 216.9 24.2 198 71-287 2-202 (887)
47 COG0027 PurT Formate-dependent 99.9 1.6E-23 3.5E-28 184.4 20.7 203 71-289 12-215 (394)
48 PRK14572 D-alanyl-alanine synt 99.9 1.1E-23 2.3E-28 196.7 20.0 205 72-285 2-228 (347)
49 PRK14568 vanB D-alanine--D-lac 99.9 5.9E-24 1.3E-28 198.2 17.6 205 70-287 2-224 (343)
50 COG0026 PurK Phosphoribosylami 99.9 3.4E-23 7.3E-28 188.0 21.9 199 71-295 1-202 (375)
51 PF02786 CPSase_L_D2: Carbamoy 99.9 9.9E-24 2.2E-28 182.9 15.3 128 184-311 1-128 (211)
52 TIGR01205 D_ala_D_alaTIGR D-al 99.9 3E-23 6.6E-28 191.2 19.1 178 83-287 20-205 (315)
53 PRK14570 D-alanyl-alanine synt 99.9 9.2E-23 2E-27 191.0 19.0 213 70-295 1-238 (364)
54 COG0151 PurD Phosphoribosylami 99.9 1.5E-21 3.3E-26 179.7 23.3 206 72-293 1-208 (428)
55 PRK14571 D-alanyl-alanine synt 99.9 6.5E-22 1.4E-26 181.2 19.9 173 73-287 2-184 (299)
56 PRK13790 phosphoribosylamine-- 99.9 5.6E-22 1.2E-26 187.2 18.7 151 129-287 13-163 (379)
57 PRK14573 bifunctional D-alanyl 99.9 5.6E-21 1.2E-25 196.4 20.9 207 69-289 449-672 (809)
58 PRK13278 purP 5-formaminoimida 99.9 8.4E-20 1.8E-24 169.4 22.3 210 71-307 18-229 (358)
59 PRK10446 ribosomal protein S6 99.8 2E-19 4.3E-24 164.9 19.8 193 73-296 2-203 (300)
60 PRK06524 biotin carboxylase-li 99.8 1.2E-19 2.6E-24 172.9 17.6 147 135-292 96-244 (493)
61 TIGR00768 rimK_fam alpha-L-glu 99.8 1.3E-18 2.9E-23 157.1 19.0 189 74-296 2-194 (277)
62 PF00289 CPSase_L_chain: Carba 99.8 4.1E-19 8.8E-24 138.0 10.7 110 70-179 1-110 (110)
63 PRK13277 5-formaminoimidazole- 99.8 9E-18 2E-22 154.0 19.8 212 71-310 17-239 (366)
64 TIGR02144 LysX_arch Lysine bio 99.8 2.4E-17 5.3E-22 149.4 20.2 174 82-285 11-185 (280)
65 PRK14016 cyanophycin synthetas 99.8 1.4E-17 3.1E-22 168.6 20.0 192 71-296 107-315 (727)
66 TIGR03103 trio_acet_GNAT GNAT- 99.8 6.6E-18 1.4E-22 166.0 15.7 161 115-296 227-397 (547)
67 PF13535 ATP-grasp_4: ATP-gras 99.7 3.1E-17 6.7E-22 138.9 12.8 109 181-295 1-109 (184)
68 KOG0237 Glycinamide ribonucleo 99.7 3.2E-16 6.9E-21 148.1 19.6 207 70-287 1-209 (788)
69 COG0189 RimK Glutathione synth 99.7 2E-16 4.3E-21 145.2 15.4 200 82-293 18-222 (318)
70 KOG0370 Multifunctional pyrimi 99.7 4.2E-16 9E-21 153.4 13.7 206 71-293 918-1135(1435)
71 COG3919 Predicted ATP-grasp en 99.7 9.7E-16 2.1E-20 134.5 11.8 208 73-293 5-222 (415)
72 COG1181 DdlA D-alanine-D-alani 99.6 1.7E-14 3.7E-19 132.2 17.5 174 83-287 23-201 (317)
73 TIGR02068 cya_phycin_syn cyano 99.6 5E-15 1.1E-19 152.9 13.4 154 131-298 160-316 (864)
74 PRK02471 bifunctional glutamat 99.6 1.8E-14 3.9E-19 145.9 16.9 111 174-296 478-592 (752)
75 KOG0370 Multifunctional pyrimi 99.6 1.9E-15 4E-20 148.9 7.5 207 71-293 377-599 (1435)
76 TIGR01435 glu_cys_lig_rel glut 99.6 3.7E-14 8E-19 141.9 13.8 111 174-296 465-579 (737)
77 PF07478 Dala_Dala_lig_C: D-al 99.6 2.7E-14 5.8E-19 123.5 11.0 95 191-294 1-99 (203)
78 PRK12458 glutathione synthetas 99.5 3.1E-13 6.7E-18 125.7 17.7 194 79-291 9-226 (338)
79 PF01071 GARS_A: Phosphoribosy 99.5 4.6E-14 1E-18 119.7 10.9 104 184-293 2-108 (194)
80 PF08443 RimK: RimK-like ATP-g 99.5 3.7E-14 8E-19 121.5 8.9 104 182-296 1-107 (190)
81 PF02222 ATP-grasp: ATP-grasp 99.5 8.6E-14 1.9E-18 116.7 9.6 95 192-296 1-96 (172)
82 PLN02941 inositol-tetrakisphos 99.5 1.2E-12 2.6E-17 120.2 15.4 154 83-285 38-207 (328)
83 TIGR01380 glut_syn glutathione 99.5 1.2E-12 2.5E-17 120.7 15.3 192 82-292 19-219 (312)
84 COG1759 5-formaminoimidazole-4 99.5 3.4E-12 7.4E-17 113.4 17.2 215 70-311 17-236 (361)
85 PRK05246 glutathione synthetas 99.5 1.8E-12 3.8E-17 119.7 15.7 196 82-296 20-225 (316)
86 COG2232 Predicted ATP-dependen 99.4 3.3E-12 7.1E-17 114.0 12.3 182 71-287 11-198 (389)
87 PRK00696 sucC succinyl-CoA syn 99.3 2.2E-11 4.8E-16 115.5 12.8 110 183-294 3-125 (388)
88 PF02655 ATP-grasp_3: ATP-gras 99.2 4.9E-12 1.1E-16 105.5 4.0 89 182-293 1-89 (161)
89 TIGR01016 sucCoAbeta succinyl- 99.2 1.3E-10 2.8E-15 110.2 13.8 109 184-294 4-126 (386)
90 PF13549 ATP-grasp_5: ATP-gras 99.2 1.2E-10 2.7E-15 101.6 11.4 112 182-295 9-131 (222)
91 TIGR02291 rimK_rel_E_lig alpha 98.9 9.4E-09 2E-13 94.0 11.2 70 174-245 27-99 (317)
92 COG1821 Predicted ATP-utilizin 98.9 6.9E-09 1.5E-13 89.9 9.3 94 158-286 89-182 (307)
93 PRK14046 malate--CoA ligase su 98.9 3.8E-08 8.3E-13 93.2 13.3 109 184-294 4-125 (392)
94 COG0045 SucC Succinyl-CoA synt 98.8 4.6E-08 1E-12 90.0 11.3 107 185-293 5-121 (387)
95 PF08442 ATP-grasp_2: ATP-gras 98.7 3.6E-08 7.7E-13 84.9 7.3 103 185-289 4-118 (202)
96 PLN00124 succinyl-CoA ligase [ 98.6 4E-07 8.7E-12 86.7 12.6 107 183-292 30-159 (422)
97 PF14397 ATPgrasp_ST: Sugar-tr 98.5 7.1E-07 1.5E-11 81.2 10.8 112 174-291 16-154 (285)
98 PLN02235 ATP citrate (pro-S)-l 98.4 2.8E-06 6E-11 80.2 11.7 106 185-293 8-132 (423)
99 PF02955 GSH-S_ATP: Prokaryoti 98.4 1.1E-06 2.3E-11 73.8 6.7 84 199-293 12-98 (173)
100 PF02844 GARS_N: Phosphoribosy 98.2 1.1E-05 2.4E-10 61.1 9.3 94 72-181 1-99 (100)
101 PF14398 ATPgrasp_YheCD: YheC/ 98.1 4.9E-05 1.1E-09 68.3 12.5 110 165-290 5-145 (262)
102 PF06849 DUF1246: Protein of u 98.1 1.7E-05 3.7E-10 61.7 7.3 121 74-203 1-123 (124)
103 PF05770 Ins134_P3_kin: Inosit 97.7 8.5E-05 1.8E-09 67.8 7.0 102 168-285 78-193 (307)
104 PF14403 CP_ATPgrasp_2: Circul 97.7 0.00049 1.1E-08 65.9 11.5 173 71-274 185-385 (445)
105 PF14305 ATPgrasp_TupA: TupA-l 97.2 0.0037 8E-08 55.4 10.5 111 177-293 13-141 (239)
106 COG1748 LYS9 Saccharopine dehy 97.0 0.0055 1.2E-07 57.8 9.8 118 71-202 1-122 (389)
107 PF11379 DUF3182: Protein of u 96.8 0.017 3.8E-07 52.7 11.2 94 199-298 114-209 (355)
108 PRK08057 cobalt-precorrin-6x r 96.7 0.02 4.3E-07 51.0 10.5 94 70-172 1-96 (248)
109 TIGR00715 precor6x_red precorr 96.6 0.019 4.2E-07 51.4 10.0 94 72-172 1-96 (256)
110 COG2099 CobK Precorrin-6x redu 96.5 0.038 8.3E-07 48.8 10.8 123 71-221 2-128 (257)
111 PF13380 CoA_binding_2: CoA bi 96.4 0.026 5.7E-07 44.1 8.8 98 72-177 1-111 (116)
112 COG1087 GalE UDP-glucose 4-epi 96.4 0.019 4.2E-07 51.9 8.6 71 72-149 1-73 (329)
113 CHL00194 ycf39 Ycf39; Provisio 96.4 0.042 9E-07 50.6 11.2 118 73-199 2-139 (317)
114 COG1064 AdhP Zn-dependent alco 96.2 0.026 5.7E-07 52.3 8.7 158 71-255 167-326 (339)
115 COG0569 TrkA K+ transport syst 96.2 0.021 4.6E-07 50.1 7.7 135 72-227 1-139 (225)
116 PRK10669 putative cation:proto 96.1 0.018 3.8E-07 57.5 7.9 116 70-199 416-531 (558)
117 PF03133 TTL: Tubulin-tyrosine 96.0 0.015 3.3E-07 53.0 6.4 66 223-297 67-139 (292)
118 PLN00016 RNA-binding protein; 96.0 0.052 1.1E-06 51.3 10.3 123 67-199 48-203 (378)
119 PF05368 NmrA: NmrA-like famil 96.0 0.12 2.5E-06 45.2 11.5 117 74-199 1-137 (233)
120 PRK03659 glutathione-regulated 95.8 0.015 3.3E-07 58.5 5.9 115 71-199 400-514 (601)
121 TIGR01470 cysG_Nterm siroheme 95.8 0.048 1E-06 47.2 8.0 35 71-105 9-43 (205)
122 PF02571 CbiJ: Precorrin-6x re 95.7 0.11 2.3E-06 46.4 10.0 94 72-172 1-97 (249)
123 KOG2799 Succinyl-CoA synthetas 95.6 0.068 1.5E-06 49.3 8.3 112 180-293 22-154 (434)
124 PF02254 TrkA_N: TrkA-N domain 95.5 0.045 9.8E-07 42.3 6.3 110 74-199 1-112 (116)
125 KOG3895 Synaptic vesicle prote 95.5 0.097 2.1E-06 48.1 9.0 134 140-285 152-297 (488)
126 PF01820 Dala_Dala_lig_N: D-al 95.5 0.0025 5.5E-08 50.0 -1.0 88 83-174 21-117 (117)
127 COG2910 Putative NADH-flavin r 95.5 0.098 2.1E-06 44.1 8.3 72 72-154 1-73 (211)
128 PRK03562 glutathione-regulated 95.4 0.033 7.2E-07 56.3 6.6 116 71-200 400-515 (621)
129 COG0300 DltE Short-chain dehyd 95.4 0.054 1.2E-06 48.6 7.1 81 68-150 3-91 (265)
130 PF13460 NAD_binding_10: NADH( 95.3 0.19 4.2E-06 41.8 9.9 85 74-169 1-90 (183)
131 TIGR02964 xanthine_xdhC xanthi 95.2 0.16 3.4E-06 45.3 9.3 35 71-105 100-134 (246)
132 PRK05993 short chain dehydroge 95.2 0.096 2.1E-06 47.1 8.1 36 70-105 3-39 (277)
133 PLN02819 lysine-ketoglutarate 95.2 0.22 4.8E-06 52.9 11.7 162 71-250 569-763 (1042)
134 PRK04148 hypothetical protein; 95.1 0.082 1.8E-06 42.4 6.6 80 71-151 17-110 (134)
135 PRK08177 short chain dehydroge 95.1 0.095 2.1E-06 45.4 7.6 77 71-151 1-79 (225)
136 KOG1447 GTP-specific succinyl- 95.0 0.22 4.7E-06 44.3 9.4 107 185-293 24-151 (412)
137 PRK05693 short chain dehydroge 95.0 0.11 2.3E-06 46.6 7.8 34 71-104 1-35 (274)
138 PRK06718 precorrin-2 dehydroge 94.9 0.17 3.6E-06 43.7 8.6 33 71-103 10-42 (202)
139 PF00070 Pyr_redox: Pyridine n 94.9 0.067 1.5E-06 38.6 5.2 59 73-148 1-59 (80)
140 PF13241 NAD_binding_7: Putati 94.6 0.048 1E-06 41.6 4.0 34 71-104 7-40 (103)
141 PF02750 Synapsin_C: Synapsin, 94.5 0.31 6.7E-06 41.4 8.9 101 174-285 1-108 (203)
142 PLN02695 GDP-D-mannose-3',5'-e 94.5 0.18 3.9E-06 47.6 8.3 33 71-103 21-54 (370)
143 PLN02657 3,8-divinyl protochlo 94.4 0.31 6.7E-06 46.4 9.9 74 70-150 59-143 (390)
144 PRK08017 oxidoreductase; Provi 94.4 0.2 4.4E-06 44.0 8.0 36 70-105 1-37 (256)
145 PF13478 XdhC_C: XdhC Rossmann 94.3 0.11 2.4E-06 41.9 5.7 32 74-105 1-32 (136)
146 PRK06079 enoyl-(acyl carrier p 94.3 0.14 3.1E-06 45.3 6.9 36 68-103 4-42 (252)
147 PRK07326 short chain dehydroge 94.2 0.21 4.6E-06 43.3 7.8 35 70-104 5-40 (237)
148 PRK12826 3-ketoacyl-(acyl-carr 94.2 0.2 4.4E-06 43.7 7.7 36 69-104 4-40 (251)
149 PRK12828 short chain dehydroge 94.2 0.27 5.9E-06 42.5 8.4 36 70-105 6-42 (239)
150 PRK06182 short chain dehydroge 94.2 0.25 5.4E-06 44.1 8.3 35 71-105 3-38 (273)
151 PRK05653 fabG 3-ketoacyl-(acyl 94.1 0.26 5.6E-06 42.8 8.2 36 70-105 4-40 (246)
152 PRK08264 short chain dehydroge 94.1 0.31 6.7E-06 42.4 8.6 75 70-152 5-82 (238)
153 PRK06719 precorrin-2 dehydroge 94.1 0.4 8.6E-06 39.6 8.6 32 71-102 13-44 (157)
154 PLN02572 UDP-sulfoquinovose sy 94.0 0.48 1E-05 45.9 10.5 34 68-101 44-78 (442)
155 TIGR02622 CDP_4_6_dhtase CDP-g 94.0 0.31 6.7E-06 45.4 8.9 76 71-151 4-83 (349)
156 PRK12829 short chain dehydroge 94.0 0.2 4.4E-06 44.2 7.4 36 69-104 9-45 (264)
157 cd01075 NAD_bind_Leu_Phe_Val_D 94.0 0.32 6.9E-06 41.9 8.3 111 71-202 28-138 (200)
158 PF01370 Epimerase: NAD depend 94.0 0.33 7.3E-06 41.9 8.6 72 74-152 1-74 (236)
159 PRK06500 short chain dehydroge 94.0 0.17 3.7E-06 44.3 6.7 35 69-103 4-39 (249)
160 PRK05565 fabG 3-ketoacyl-(acyl 93.9 0.25 5.4E-06 43.0 7.7 34 70-103 4-39 (247)
161 PRK12825 fabG 3-ketoacyl-(acyl 93.9 0.31 6.8E-06 42.3 8.3 34 70-103 5-39 (249)
162 PRK06483 dihydromonapterin red 93.9 0.33 7.1E-06 42.2 8.4 36 70-105 1-37 (236)
163 PLN02240 UDP-glucose 4-epimera 93.9 0.36 7.8E-06 44.8 9.1 77 69-150 3-88 (352)
164 PRK07231 fabG 3-ketoacyl-(acyl 93.9 0.29 6.2E-06 42.8 8.0 35 71-105 5-40 (251)
165 PRK07856 short chain dehydroge 93.9 0.33 7.1E-06 42.7 8.4 35 70-104 5-40 (252)
166 PRK13303 L-aspartate dehydroge 93.8 0.62 1.4E-05 41.9 10.0 113 72-198 2-115 (265)
167 PLN03209 translocon at the inn 93.8 0.51 1.1E-05 47.0 10.1 36 70-105 79-115 (576)
168 PF04321 RmlD_sub_bind: RmlD s 93.7 0.16 3.4E-06 46.2 6.2 84 72-177 1-102 (286)
169 PLN02653 GDP-mannose 4,6-dehyd 93.7 0.36 7.7E-06 44.7 8.6 76 70-150 5-90 (340)
170 PRK08267 short chain dehydroge 93.7 0.32 6.9E-06 43.0 8.0 35 71-105 1-36 (260)
171 PRK06194 hypothetical protein; 93.7 0.3 6.5E-06 43.9 7.9 34 71-104 6-40 (287)
172 PRK07236 hypothetical protein; 93.6 0.12 2.6E-06 48.9 5.4 36 69-104 4-39 (386)
173 PRK08219 short chain dehydroge 93.6 0.34 7.4E-06 41.6 7.8 74 70-151 2-79 (227)
174 PRK13394 3-hydroxybutyrate deh 93.6 0.35 7.6E-06 42.6 8.0 35 70-104 6-41 (262)
175 PRK06953 short chain dehydroge 93.5 0.22 4.8E-06 43.0 6.5 34 71-104 1-35 (222)
176 PRK05562 precorrin-2 dehydroge 93.5 0.46 9.9E-06 41.6 8.3 35 71-105 25-59 (223)
177 PRK13302 putative L-aspartate 93.5 0.82 1.8E-05 41.3 10.3 142 70-233 5-155 (271)
178 PRK06398 aldose dehydrogenase; 93.5 0.5 1.1E-05 41.9 8.9 34 70-103 5-39 (258)
179 PRK08643 acetoin reductase; Va 93.4 0.33 7.2E-06 42.7 7.7 35 70-104 1-36 (256)
180 PRK09496 trkA potassium transp 93.4 0.28 6.1E-06 47.4 7.7 35 72-106 1-35 (453)
181 PRK06057 short chain dehydroge 93.4 0.45 9.7E-06 42.0 8.5 35 70-104 6-41 (255)
182 PRK09135 pteridine reductase; 93.4 0.48 1E-05 41.2 8.6 34 70-103 5-39 (249)
183 PRK07774 short chain dehydroge 93.4 0.43 9.4E-06 41.7 8.3 35 70-104 5-40 (250)
184 COG0702 Predicted nucleoside-d 93.4 1.3 2.8E-05 39.2 11.4 118 72-199 1-136 (275)
185 PRK08265 short chain dehydroge 93.3 0.3 6.5E-06 43.4 7.3 34 71-104 6-40 (261)
186 PRK07067 sorbitol dehydrogenas 93.3 0.41 8.9E-06 42.2 8.1 36 70-105 5-41 (257)
187 PRK07074 short chain dehydroge 93.3 0.39 8.5E-06 42.3 7.9 35 70-104 1-36 (257)
188 cd01483 E1_enzyme_family Super 93.3 0.61 1.3E-05 37.5 8.3 32 73-104 1-33 (143)
189 PRK12742 oxidoreductase; Provi 93.3 0.53 1.1E-05 40.8 8.6 75 70-151 5-83 (237)
190 PRK06988 putative formyltransf 93.3 0.3 6.6E-06 45.0 7.2 78 70-150 1-84 (312)
191 PRK07825 short chain dehydroge 93.2 0.29 6.2E-06 43.7 7.0 34 71-104 5-39 (273)
192 PRK12939 short chain dehydroge 93.2 0.47 1E-05 41.4 8.2 34 71-104 7-41 (250)
193 PRK10217 dTDP-glucose 4,6-dehy 93.2 0.48 1E-05 44.0 8.7 76 71-151 1-82 (355)
194 TIGR01472 gmd GDP-mannose 4,6- 93.2 0.45 9.8E-06 44.1 8.4 72 72-150 1-85 (343)
195 PRK10537 voltage-gated potassi 93.2 0.37 8E-06 46.0 7.8 113 71-199 240-352 (393)
196 PRK07666 fabG 3-ketoacyl-(acyl 93.2 0.51 1.1E-05 41.1 8.3 34 71-104 7-41 (239)
197 TIGR03466 HpnA hopanoid-associ 93.2 0.39 8.4E-06 43.8 7.9 70 72-150 1-71 (328)
198 PLN02686 cinnamoyl-CoA reducta 93.1 0.41 9E-06 45.1 8.2 42 62-103 44-86 (367)
199 PRK05472 redox-sensing transcr 93.1 0.73 1.6E-05 39.9 9.1 89 71-172 84-174 (213)
200 PRK07478 short chain dehydroge 93.1 0.4 8.6E-06 42.2 7.6 34 71-104 6-40 (254)
201 PRK07060 short chain dehydroge 93.1 0.55 1.2E-05 40.9 8.4 74 71-151 9-85 (245)
202 PRK07024 short chain dehydroge 93.1 0.44 9.5E-06 42.1 7.8 35 70-104 1-36 (257)
203 PRK07577 short chain dehydroge 93.0 0.57 1.2E-05 40.5 8.4 35 71-105 3-38 (234)
204 PF01113 DapB_N: Dihydrodipico 93.0 0.53 1.1E-05 37.1 7.3 32 72-103 1-34 (124)
205 PRK08703 short chain dehydroge 93.0 0.35 7.7E-06 42.1 7.0 34 71-104 6-40 (239)
206 PRK14106 murD UDP-N-acetylmura 92.9 1.9 4.2E-05 41.6 12.7 112 71-197 5-135 (450)
207 PRK06200 2,3-dihydroxy-2,3-dih 92.9 0.3 6.4E-06 43.3 6.6 34 71-104 6-40 (263)
208 PRK06180 short chain dehydroge 92.9 0.3 6.5E-06 43.8 6.6 35 71-105 4-39 (277)
209 PRK12745 3-ketoacyl-(acyl-carr 92.9 0.49 1.1E-05 41.5 7.9 34 70-103 1-35 (256)
210 TIGR03649 ergot_EASG ergot alk 92.9 0.96 2.1E-05 40.6 9.9 117 73-199 1-130 (285)
211 PRK01710 murD UDP-N-acetylmura 92.9 2 4.4E-05 41.7 12.7 114 71-199 14-146 (458)
212 PRK09496 trkA potassium transp 92.8 0.47 1E-05 45.8 8.2 116 70-199 230-346 (453)
213 PRK01438 murD UDP-N-acetylmura 92.7 0.89 1.9E-05 44.4 10.2 112 71-198 16-150 (480)
214 PF01408 GFO_IDH_MocA: Oxidore 92.7 1.6 3.5E-05 33.5 9.8 87 73-172 2-90 (120)
215 PRK06138 short chain dehydroge 92.7 0.52 1.1E-05 41.2 7.8 34 71-104 5-39 (252)
216 PRK06482 short chain dehydroge 92.7 0.52 1.1E-05 42.1 7.8 35 70-104 1-36 (276)
217 PRK06139 short chain dehydroge 92.7 0.36 7.7E-06 44.9 6.9 35 70-104 6-41 (330)
218 PRK07063 short chain dehydroge 92.7 0.57 1.2E-05 41.4 8.0 34 71-104 7-41 (260)
219 PRK12429 3-hydroxybutyrate deh 92.6 0.58 1.3E-05 41.0 7.9 35 71-105 4-39 (258)
220 PRK12824 acetoacetyl-CoA reduc 92.6 0.63 1.4E-05 40.4 8.1 35 70-104 1-36 (245)
221 PRK07454 short chain dehydroge 92.5 0.56 1.2E-05 40.8 7.7 34 71-104 6-40 (241)
222 PRK12384 sorbitol-6-phosphate 92.5 0.66 1.4E-05 40.9 8.2 35 70-104 1-36 (259)
223 PLN00198 anthocyanidin reducta 92.5 0.73 1.6E-05 42.6 8.8 34 71-104 9-43 (338)
224 PRK07576 short chain dehydroge 92.5 0.54 1.2E-05 41.8 7.6 34 71-104 9-43 (264)
225 PRK06196 oxidoreductase; Provi 92.4 0.38 8.3E-06 44.1 6.8 34 71-104 26-60 (315)
226 TIGR03025 EPS_sugtrans exopoly 92.4 0.95 2.1E-05 43.8 9.8 90 71-172 125-219 (445)
227 PRK07453 protochlorophyllide o 92.4 0.57 1.2E-05 43.0 7.9 34 70-103 5-39 (322)
228 PRK07102 short chain dehydroge 92.4 0.7 1.5E-05 40.3 8.2 34 71-104 1-35 (243)
229 PRK01368 murD UDP-N-acetylmura 92.4 2.5 5.5E-05 41.1 12.7 112 71-199 6-133 (454)
230 PRK09424 pntA NAD(P) transhydr 92.4 0.61 1.3E-05 45.9 8.4 51 70-120 164-214 (509)
231 PRK12823 benD 1,6-dihydroxycyc 92.4 0.58 1.3E-05 41.3 7.7 33 71-103 8-41 (260)
232 PRK12475 thiamine/molybdopteri 92.4 1.2 2.7E-05 41.5 10.1 35 70-104 23-58 (338)
233 PLN02778 3,5-epimerase/4-reduc 92.3 0.6 1.3E-05 42.6 7.9 30 70-99 8-38 (298)
234 PRK09291 short chain dehydroge 92.3 0.48 1E-05 41.6 7.1 34 70-103 1-35 (257)
235 COG0771 MurD UDP-N-acetylmuram 92.3 0.97 2.1E-05 43.7 9.4 116 71-201 7-141 (448)
236 PRK06947 glucose-1-dehydrogena 92.3 0.7 1.5E-05 40.4 8.0 32 70-101 1-33 (248)
237 PRK06179 short chain dehydroge 92.3 0.73 1.6E-05 40.9 8.2 34 71-104 4-38 (270)
238 PRK10675 UDP-galactose-4-epime 92.3 0.46 9.9E-06 43.8 7.1 72 72-150 1-80 (338)
239 PRK05876 short chain dehydroge 92.3 0.62 1.3E-05 41.9 7.8 34 70-103 5-39 (275)
240 PRK06940 short chain dehydroge 92.2 1.1 2.5E-05 40.1 9.5 34 70-104 1-34 (275)
241 PRK09987 dTDP-4-dehydrorhamnos 92.2 0.5 1.1E-05 43.0 7.2 60 72-150 1-61 (299)
242 PRK02472 murD UDP-N-acetylmura 92.2 2.4 5.3E-05 40.8 12.3 114 71-198 5-136 (447)
243 PF03446 NAD_binding_2: NAD bi 92.2 0.73 1.6E-05 38.1 7.5 34 71-104 1-34 (163)
244 TIGR02356 adenyl_thiF thiazole 92.2 0.9 1.9E-05 39.1 8.3 34 70-103 20-54 (202)
245 PRK05875 short chain dehydroge 92.1 0.75 1.6E-05 41.0 8.1 34 71-104 7-41 (276)
246 PRK08220 2,3-dihydroxybenzoate 92.1 1 2.2E-05 39.4 8.8 34 71-104 8-42 (252)
247 PRK08226 short chain dehydroge 92.1 0.43 9.3E-06 42.2 6.5 34 70-103 5-39 (263)
248 PRK12743 oxidoreductase; Provi 92.1 0.8 1.7E-05 40.4 8.2 33 70-102 1-34 (256)
249 cd08239 THR_DH_like L-threonin 92.1 0.69 1.5E-05 42.7 8.0 93 71-169 164-257 (339)
250 PRK00141 murD UDP-N-acetylmura 92.0 1.1 2.4E-05 43.8 9.8 86 71-173 15-103 (473)
251 PRK06463 fabG 3-ketoacyl-(acyl 92.0 0.77 1.7E-05 40.4 8.0 33 71-103 7-40 (255)
252 PRK07814 short chain dehydroge 92.0 0.7 1.5E-05 41.0 7.8 34 71-104 10-44 (263)
253 TIGR00518 alaDH alanine dehydr 92.0 0.64 1.4E-05 44.0 7.8 71 71-150 167-237 (370)
254 PRK06935 2-deoxy-D-gluconate 3 92.0 0.87 1.9E-05 40.2 8.3 33 71-103 15-48 (258)
255 PRK07984 enoyl-(acyl carrier p 91.9 0.65 1.4E-05 41.5 7.5 33 71-103 6-41 (262)
256 PF03435 Saccharop_dh: Sacchar 91.9 0.77 1.7E-05 43.5 8.3 115 74-202 1-121 (386)
257 PRK04308 murD UDP-N-acetylmura 91.9 3.8 8.3E-05 39.6 13.3 112 71-198 5-138 (445)
258 PRK06172 short chain dehydroge 91.9 0.89 1.9E-05 39.9 8.2 35 71-105 7-42 (253)
259 KOG0023 Alcohol dehydrogenase, 91.9 1.5 3.2E-05 40.4 9.5 51 54-104 158-215 (360)
260 PRK07806 short chain dehydroge 91.9 0.93 2E-05 39.6 8.3 33 71-103 6-39 (248)
261 PRK09126 hypothetical protein; 91.9 0.25 5.3E-06 46.7 4.9 36 69-104 1-36 (392)
262 PRK06523 short chain dehydroge 91.8 0.77 1.7E-05 40.5 7.8 34 71-104 9-43 (260)
263 PF00899 ThiF: ThiF family; I 91.8 1 2.3E-05 35.8 7.8 34 71-104 2-36 (135)
264 PRK08263 short chain dehydroge 91.8 0.49 1.1E-05 42.3 6.5 35 70-104 2-37 (275)
265 TIGR02355 moeB molybdopterin s 91.8 2.6 5.7E-05 37.3 11.0 120 71-201 24-144 (240)
266 COG1832 Predicted CoA-binding 91.8 0.58 1.3E-05 37.4 6.0 32 71-102 16-51 (140)
267 PRK07890 short chain dehydroge 91.6 0.65 1.4E-05 40.8 7.1 34 71-104 5-39 (258)
268 TIGR01214 rmlD dTDP-4-dehydror 91.6 0.64 1.4E-05 41.6 7.2 57 73-151 1-58 (287)
269 PRK07889 enoyl-(acyl carrier p 91.6 0.75 1.6E-05 40.8 7.5 34 70-103 6-42 (256)
270 COG2308 Uncharacterized conser 91.6 0.3 6.5E-06 46.4 4.9 72 193-273 340-413 (488)
271 PRK00421 murC UDP-N-acetylmura 91.6 1.6 3.4E-05 42.5 10.3 111 71-197 7-134 (461)
272 PRK10124 putative UDP-glucose 91.6 1.6 3.5E-05 42.6 10.2 86 71-171 143-233 (463)
273 PF01262 AlaDh_PNT_C: Alanine 91.6 0.74 1.6E-05 38.3 6.9 35 71-105 20-54 (168)
274 COG0289 DapB Dihydrodipicolina 91.5 3.4 7.4E-05 37.0 11.2 111 70-185 1-135 (266)
275 PRK08690 enoyl-(acyl carrier p 91.5 0.68 1.5E-05 41.2 7.1 79 70-152 5-93 (261)
276 PRK05868 hypothetical protein; 91.5 0.3 6.6E-06 46.1 5.1 35 71-105 1-35 (372)
277 cd01485 E1-1_like Ubiquitin ac 91.5 2.2 4.7E-05 36.6 10.0 75 70-148 18-93 (198)
278 PRK15181 Vi polysaccharide bio 91.5 1 2.3E-05 41.9 8.6 33 71-103 15-48 (348)
279 PRK05866 short chain dehydroge 91.5 0.75 1.6E-05 41.8 7.4 34 71-104 40-74 (293)
280 TIGR03023 WcaJ_sugtrans Undeca 91.5 1.4 2.9E-05 42.8 9.6 89 71-171 128-221 (451)
281 PRK06841 short chain dehydroge 91.4 0.62 1.3E-05 40.9 6.7 34 71-104 15-49 (255)
282 TIGR03325 BphB_TodD cis-2,3-di 91.4 0.77 1.7E-05 40.7 7.3 33 71-103 5-38 (262)
283 PRK06505 enoyl-(acyl carrier p 91.4 0.62 1.3E-05 41.8 6.7 32 71-102 7-41 (271)
284 PRK06701 short chain dehydroge 91.4 1.3 2.9E-05 40.0 9.0 34 71-104 46-80 (290)
285 PRK06914 short chain dehydroge 91.4 0.89 1.9E-05 40.6 7.8 36 70-105 2-38 (280)
286 PRK11908 NAD-dependent epimera 91.3 0.83 1.8E-05 42.4 7.8 31 72-102 2-34 (347)
287 PRK12936 3-ketoacyl-(acyl-carr 91.3 1.2 2.5E-05 38.7 8.3 33 71-103 6-39 (245)
288 COG1648 CysG Siroheme synthase 91.3 0.77 1.7E-05 39.9 6.9 34 71-104 12-45 (210)
289 PRK08163 salicylate hydroxylas 91.3 0.34 7.4E-06 45.8 5.2 35 70-104 3-37 (396)
290 PRK08628 short chain dehydroge 91.3 1.3 2.9E-05 38.9 8.7 36 70-105 6-42 (258)
291 COG1042 Acyl-CoA synthetase (N 91.2 1.4 3.1E-05 44.2 9.6 100 183-295 471-576 (598)
292 PRK07533 enoyl-(acyl carrier p 91.2 0.79 1.7E-05 40.7 7.2 79 71-151 10-96 (258)
293 PRK09072 short chain dehydroge 91.2 0.99 2.1E-05 39.9 7.9 34 71-104 5-39 (263)
294 KOG1371 UDP-glucose 4-epimeras 91.2 0.41 9E-06 43.9 5.3 74 71-148 2-82 (343)
295 PRK14573 bifunctional D-alanyl 91.2 3 6.5E-05 43.7 12.4 110 71-198 4-132 (809)
296 PRK09134 short chain dehydroge 91.2 1.5 3.2E-05 38.7 8.9 34 69-102 7-41 (258)
297 PRK07523 gluconate 5-dehydroge 91.1 0.81 1.8E-05 40.3 7.2 34 71-104 10-44 (255)
298 TIGR03451 mycoS_dep_FDH mycoth 91.1 1.2 2.5E-05 41.7 8.6 76 71-152 177-254 (358)
299 PRK10538 malonic semialdehyde 91.1 0.59 1.3E-05 41.1 6.2 33 72-104 1-34 (248)
300 PLN02253 xanthoxin dehydrogena 91.1 1.2 2.6E-05 39.8 8.3 33 71-103 18-51 (280)
301 PRK08773 2-octaprenyl-3-methyl 91.1 0.3 6.5E-06 46.2 4.6 36 69-104 4-39 (392)
302 PRK06113 7-alpha-hydroxysteroi 91.1 1.2 2.6E-05 39.2 8.2 34 70-103 10-44 (255)
303 PRK08251 short chain dehydroge 91.1 0.95 2.1E-05 39.5 7.5 35 70-104 1-36 (248)
304 PRK08589 short chain dehydroge 91.0 0.84 1.8E-05 40.8 7.3 33 71-103 6-39 (272)
305 TIGR01832 kduD 2-deoxy-D-gluco 91.0 0.87 1.9E-05 39.8 7.2 33 71-103 5-38 (248)
306 PF13727 CoA_binding_3: CoA-bi 91.0 1.2 2.6E-05 36.5 7.7 89 72-171 78-171 (175)
307 cd03466 Nitrogenase_NifN_2 Nit 91.0 2.1 4.6E-05 41.3 10.4 88 71-172 300-394 (429)
308 COG2344 AT-rich DNA-binding pr 91.0 1.4 3.1E-05 37.3 7.8 88 71-172 84-174 (211)
309 PF01488 Shikimate_DH: Shikima 91.0 0.52 1.1E-05 37.7 5.2 33 71-103 12-45 (135)
310 PRK08217 fabG 3-ketoacyl-(acyl 90.9 1.1 2.4E-05 39.0 7.8 34 71-104 5-39 (253)
311 TIGR02717 AcCoA-syn-alpha acet 90.9 2.2 4.7E-05 41.5 10.4 100 71-176 7-129 (447)
312 PRK06185 hypothetical protein; 90.9 0.36 7.9E-06 45.8 5.0 35 70-104 5-39 (407)
313 cd00755 YgdL_like Family of ac 90.9 1.3 2.8E-05 39.0 8.1 34 70-103 10-44 (231)
314 PRK08303 short chain dehydroge 90.8 0.94 2E-05 41.5 7.4 36 68-103 5-41 (305)
315 PRK12446 undecaprenyldiphospho 90.8 0.89 1.9E-05 42.6 7.4 34 71-104 1-39 (352)
316 PRK06171 sorbitol-6-phosphate 90.8 1.5 3.3E-05 38.8 8.6 35 71-105 9-44 (266)
317 PRK07023 short chain dehydroge 90.8 1.3 2.8E-05 38.7 8.0 33 72-104 2-35 (243)
318 PRK06126 hypothetical protein; 90.7 0.39 8.6E-06 47.7 5.3 37 68-104 4-40 (545)
319 PRK08594 enoyl-(acyl carrier p 90.7 1.3 2.8E-05 39.3 8.2 32 71-102 7-41 (257)
320 PRK06753 hypothetical protein; 90.7 0.4 8.6E-06 44.9 5.0 34 72-105 1-34 (373)
321 PRK08945 putative oxoacyl-(acy 90.7 1.1 2.4E-05 39.2 7.6 34 71-104 12-46 (247)
322 PRK07831 short chain dehydroge 90.7 0.92 2E-05 40.1 7.2 34 71-104 17-52 (262)
323 PRK07688 thiamine/molybdopteri 90.7 1.8 3.9E-05 40.5 9.2 35 70-104 23-58 (339)
324 PRK09620 hypothetical protein; 90.7 1 2.2E-05 39.7 7.2 32 71-102 3-51 (229)
325 KOG1198 Zinc-binding oxidoredu 90.7 4 8.6E-05 38.3 11.5 71 71-152 158-234 (347)
326 TIGR02049 gshA_ferroox glutama 90.7 1.5 3.2E-05 41.0 8.3 51 224-274 260-313 (403)
327 PRK06198 short chain dehydroge 90.7 1.2 2.7E-05 39.1 7.9 34 70-103 5-40 (260)
328 PRK05717 oxidoreductase; Valid 90.6 0.81 1.8E-05 40.3 6.7 34 71-104 10-44 (255)
329 PRK12367 short chain dehydroge 90.6 1.1 2.4E-05 39.7 7.4 35 70-104 13-48 (245)
330 PRK07035 short chain dehydroge 90.6 1.2 2.7E-05 38.9 7.8 34 71-104 8-42 (252)
331 PRK06128 oxidoreductase; Provi 90.6 1.3 2.7E-05 40.3 8.1 34 70-103 54-88 (300)
332 PRK05867 short chain dehydroge 90.5 0.99 2.2E-05 39.7 7.2 34 71-104 9-43 (253)
333 PRK06949 short chain dehydroge 90.5 1.2 2.5E-05 39.2 7.6 34 71-104 9-43 (258)
334 PRK06475 salicylate hydroxylas 90.5 0.4 8.6E-06 45.6 4.9 34 71-104 2-35 (400)
335 PF01494 FAD_binding_3: FAD bi 90.5 0.46 9.9E-06 43.6 5.2 34 72-105 2-35 (356)
336 KOG1399 Flavin-containing mono 90.5 0.39 8.6E-06 46.5 4.8 38 68-105 3-40 (448)
337 PF04174 CP_ATPgrasp_1: A circ 90.5 0.3 6.4E-06 45.3 3.8 68 193-269 262-330 (330)
338 PRK03369 murD UDP-N-acetylmura 90.5 1.7 3.6E-05 42.7 9.3 88 71-173 12-99 (488)
339 PRK06847 hypothetical protein; 90.5 0.48 1E-05 44.4 5.3 34 71-104 4-37 (375)
340 PRK05678 succinyl-CoA syntheta 90.5 2.9 6.2E-05 38.2 10.1 109 71-185 8-133 (291)
341 PRK00124 hypothetical protein; 90.5 8.6 0.00019 31.5 13.2 115 73-199 2-122 (151)
342 PRK08278 short chain dehydroge 90.4 1.4 3.1E-05 39.3 8.2 34 71-104 6-40 (273)
343 PRK05865 hypothetical protein; 90.4 4.1 9E-05 42.8 12.4 111 72-200 1-121 (854)
344 PLN02896 cinnamyl-alcohol dehy 90.3 1.2 2.7E-05 41.4 8.0 33 71-103 10-43 (353)
345 TIGR02360 pbenz_hydroxyl 4-hyd 90.3 0.47 1E-05 45.1 5.1 35 70-104 1-35 (390)
346 PRK08213 gluconate 5-dehydroge 90.3 0.91 2E-05 40.0 6.7 34 71-104 12-46 (259)
347 PRK04690 murD UDP-N-acetylmura 90.2 2.1 4.4E-05 41.9 9.6 115 71-199 8-144 (468)
348 PRK07109 short chain dehydroge 90.2 1.2 2.5E-05 41.4 7.6 34 71-104 8-42 (334)
349 PRK12827 short chain dehydroge 90.2 2.2 4.7E-05 37.0 9.0 33 70-102 5-38 (249)
350 PLN02214 cinnamoyl-CoA reducta 90.2 1.5 3.4E-05 40.7 8.4 35 70-104 9-44 (342)
351 PRK07062 short chain dehydroge 90.2 1.2 2.7E-05 39.3 7.5 35 71-105 8-43 (265)
352 PRK08243 4-hydroxybenzoate 3-m 90.0 0.49 1.1E-05 44.8 5.1 35 70-104 1-35 (392)
353 TIGR03366 HpnZ_proposed putati 90.0 1.2 2.5E-05 40.1 7.3 74 71-151 121-195 (280)
354 PRK06181 short chain dehydroge 90.0 1.4 3E-05 38.9 7.6 33 72-104 2-35 (263)
355 PRK08340 glucose-1-dehydrogena 90.0 1.4 3E-05 39.0 7.6 33 72-104 1-34 (259)
356 PRK05335 tRNA (uracil-5-)-meth 90.0 0.51 1.1E-05 45.4 5.0 35 70-104 1-35 (436)
357 PF02826 2-Hacid_dh_C: D-isome 90.0 0.77 1.7E-05 38.6 5.7 37 69-105 34-70 (178)
358 PRK08416 7-alpha-hydroxysteroi 90.0 1.4 3E-05 39.0 7.7 32 70-101 7-39 (260)
359 PRK06197 short chain dehydroge 89.9 1.1 2.3E-05 40.9 7.0 34 70-103 15-49 (306)
360 PRK08277 D-mannonate oxidoredu 89.9 1.4 3.1E-05 39.2 7.7 34 71-104 10-44 (278)
361 PRK10637 cysG siroheme synthas 89.9 1.5 3.3E-05 42.7 8.3 34 71-104 12-45 (457)
362 PRK08309 short chain dehydroge 89.8 3.3 7.1E-05 34.8 9.4 32 72-103 1-32 (177)
363 PRK00048 dihydrodipicolinate r 89.8 4.8 0.0001 36.0 11.0 30 72-101 2-33 (257)
364 PRK06125 short chain dehydroge 89.8 0.85 1.8E-05 40.3 6.2 34 71-104 7-41 (259)
365 PRK06484 short chain dehydroge 89.8 1.6 3.5E-05 42.9 8.7 35 70-104 268-303 (520)
366 PRK08339 short chain dehydroge 89.8 1.3 2.8E-05 39.5 7.3 34 71-104 8-42 (263)
367 PRK12481 2-deoxy-D-gluconate 3 89.7 0.93 2E-05 40.0 6.3 32 71-102 8-40 (251)
368 COG1671 Uncharacterized protei 89.7 9.8 0.00021 31.0 12.9 104 82-199 13-121 (150)
369 PRK12771 putative glutamate sy 89.7 0.92 2E-05 45.4 6.9 34 70-103 136-169 (564)
370 PRK08132 FAD-dependent oxidore 89.7 0.51 1.1E-05 46.9 5.1 39 66-104 18-56 (547)
371 PRK13304 L-aspartate dehydroge 89.7 2.8 6E-05 37.7 9.3 109 72-198 2-115 (265)
372 PRK06101 short chain dehydroge 89.7 0.74 1.6E-05 40.2 5.6 34 71-104 1-35 (240)
373 PRK08642 fabG 3-ketoacyl-(acyl 89.6 1.5 3.3E-05 38.2 7.6 32 71-102 5-37 (253)
374 COG1091 RfbD dTDP-4-dehydrorha 89.6 0.95 2.1E-05 41.0 6.2 54 74-150 3-57 (281)
375 PRK08159 enoyl-(acyl carrier p 89.6 1.1 2.3E-05 40.2 6.7 31 71-101 10-43 (272)
376 PRK12409 D-amino acid dehydrog 89.5 0.56 1.2E-05 44.6 5.0 33 72-104 2-34 (410)
377 PRK05884 short chain dehydroge 89.5 1.6 3.5E-05 37.7 7.6 32 73-104 2-34 (223)
378 PRK08862 short chain dehydroge 89.5 1.7 3.8E-05 37.8 7.8 35 71-105 5-40 (227)
379 TIGR01285 nifN nitrogenase mol 89.5 2.6 5.6E-05 40.8 9.6 85 71-172 311-395 (432)
380 TIGR01179 galE UDP-glucose-4-e 89.4 1.9 4.1E-05 39.1 8.3 74 73-151 1-78 (328)
381 PRK07775 short chain dehydroge 89.4 1.9 4.1E-05 38.5 8.2 35 69-103 8-43 (274)
382 KOG2158 Tubulin-tyrosine ligas 89.4 0.29 6.3E-06 46.7 2.8 68 180-249 186-254 (565)
383 PRK05786 fabG 3-ketoacyl-(acyl 89.4 1.6 3.5E-05 37.7 7.5 35 70-104 4-39 (238)
384 PRK15116 sulfur acceptor prote 89.3 1.5 3.2E-05 39.5 7.3 34 70-103 29-63 (268)
385 PRK08063 enoyl-(acyl carrier p 89.3 1.9 4.1E-05 37.6 8.0 31 71-101 4-35 (250)
386 COG1063 Tdh Threonine dehydrog 89.2 1.3 2.9E-05 41.4 7.2 91 73-168 171-263 (350)
387 PRK08085 gluconate 5-dehydroge 89.2 1.3 2.8E-05 38.9 6.8 34 71-104 9-43 (254)
388 PRK09242 tropinone reductase; 89.2 1.8 3.9E-05 38.1 7.7 34 71-104 9-43 (257)
389 PRK12937 short chain dehydroge 89.2 1.9 4E-05 37.5 7.8 32 71-102 5-37 (245)
390 PLN02927 antheraxanthin epoxid 89.1 0.62 1.3E-05 47.4 5.2 36 69-104 79-114 (668)
391 cd08281 liver_ADH_like1 Zinc-d 89.1 1.6 3.5E-05 40.9 7.8 75 71-152 192-268 (371)
392 cd05211 NAD_bind_Glu_Leu_Phe_V 89.1 1.7 3.8E-05 37.8 7.3 33 69-101 21-53 (217)
393 PLN02871 UDP-sulfoquinovose:DA 89.1 7.2 0.00016 37.8 12.5 67 83-151 80-152 (465)
394 PF02639 DUF188: Uncharacteriz 89.1 10 0.00022 30.3 11.6 118 86-220 2-124 (130)
395 PRK05557 fabG 3-ketoacyl-(acyl 89.0 2.7 5.8E-05 36.3 8.6 34 71-104 5-39 (248)
396 PRK08993 2-deoxy-D-gluconate 3 89.0 1.4 3E-05 38.8 6.9 32 71-102 10-42 (253)
397 PLN02740 Alcohol dehydrogenase 89.0 2 4.3E-05 40.6 8.3 77 71-152 199-277 (381)
398 PRK06603 enoyl-(acyl carrier p 89.0 1.4 3E-05 39.1 6.9 34 70-103 7-43 (260)
399 TIGR01283 nifE nitrogenase mol 88.9 3.2 6.9E-05 40.4 9.8 88 71-172 326-417 (456)
400 PRK09186 flagellin modificatio 88.9 1.7 3.6E-05 38.1 7.3 34 71-104 4-38 (256)
401 PRK12809 putative oxidoreducta 88.8 0.95 2.1E-05 46.0 6.4 35 70-104 309-343 (639)
402 PLN02427 UDP-apiose/xylose syn 88.8 1.9 4.2E-05 40.6 8.1 33 71-103 14-48 (386)
403 PRK10084 dTDP-glucose 4,6 dehy 88.8 2.4 5.1E-05 39.3 8.6 72 73-151 2-81 (352)
404 cd01080 NAD_bind_m-THF_DH_Cycl 88.8 0.97 2.1E-05 37.8 5.3 34 70-103 43-77 (168)
405 PRK07370 enoyl-(acyl carrier p 88.8 1.2 2.7E-05 39.4 6.4 32 70-101 5-39 (258)
406 PRK12810 gltD glutamate syntha 88.7 1.8 3.8E-05 42.3 7.9 34 71-104 143-176 (471)
407 PRK08229 2-dehydropantoate 2-r 88.7 0.67 1.4E-05 43.0 4.8 34 70-103 1-34 (341)
408 PRK12748 3-ketoacyl-(acyl-carr 88.6 1.9 4E-05 38.0 7.4 34 70-103 4-40 (256)
409 cd00757 ThiF_MoeB_HesA_family 88.6 4.1 8.9E-05 35.6 9.5 121 69-200 19-140 (228)
410 PRK05854 short chain dehydroge 88.6 2.7 5.8E-05 38.5 8.7 35 70-104 13-48 (313)
411 cd01965 Nitrogenase_MoFe_beta_ 88.6 2.1 4.5E-05 41.3 8.2 86 71-172 299-393 (428)
412 PRK09853 putative selenate red 88.5 1.1 2.4E-05 47.7 6.6 35 70-104 538-572 (1019)
413 PRK07097 gluconate 5-dehydroge 88.5 2.5 5.4E-05 37.4 8.2 34 71-104 10-44 (265)
414 PRK07608 ubiquinone biosynthes 88.5 0.66 1.4E-05 43.6 4.7 36 70-105 4-39 (388)
415 PRK07045 putative monooxygenas 88.5 0.82 1.8E-05 43.1 5.3 35 71-105 5-39 (388)
416 PRK07677 short chain dehydroge 88.5 1.9 4.1E-05 37.9 7.3 33 72-104 2-35 (252)
417 PF00670 AdoHcyase_NAD: S-aden 88.4 0.67 1.5E-05 38.4 4.1 34 71-104 23-56 (162)
418 PRK06077 fabG 3-ketoacyl-(acyl 88.4 2.9 6.3E-05 36.4 8.5 31 71-101 6-37 (252)
419 PRK08244 hypothetical protein; 88.4 0.7 1.5E-05 45.3 4.9 35 71-105 2-36 (493)
420 PLN02166 dTDP-glucose 4,6-dehy 88.4 0.98 2.1E-05 43.7 5.9 39 64-102 113-152 (436)
421 KOG1209 1-Acyl dihydroxyaceton 88.4 4 8.6E-05 35.6 8.7 116 71-196 7-132 (289)
422 PRK06114 short chain dehydroge 88.3 3.1 6.7E-05 36.5 8.6 33 71-103 8-41 (254)
423 PRK05872 short chain dehydroge 88.3 2.5 5.4E-05 38.3 8.2 34 71-104 9-43 (296)
424 PRK08306 dipicolinate synthase 88.3 1.6 3.5E-05 39.9 6.9 35 70-104 151-185 (296)
425 PRK00436 argC N-acetyl-gamma-g 88.3 1.8 3.9E-05 40.5 7.3 33 70-102 1-35 (343)
426 PRK07494 2-octaprenyl-6-methox 88.2 0.68 1.5E-05 43.6 4.6 34 71-104 7-40 (388)
427 PRK12746 short chain dehydroge 88.2 2.4 5.3E-05 37.0 7.9 31 71-101 6-37 (254)
428 KOG0024 Sorbitol dehydrogenase 88.2 2.9 6.2E-05 38.6 8.2 78 70-152 169-251 (354)
429 PF02737 3HCDH_N: 3-hydroxyacy 88.1 0.6 1.3E-05 39.4 3.7 34 73-106 1-34 (180)
430 PRK07538 hypothetical protein; 88.1 0.78 1.7E-05 43.8 5.0 33 72-104 1-33 (413)
431 PF00743 FMO-like: Flavin-bind 88.1 0.76 1.6E-05 45.7 5.0 35 71-105 1-35 (531)
432 PLN02662 cinnamyl-alcohol dehy 88.1 1.7 3.6E-05 39.7 7.0 34 71-104 4-38 (322)
433 PRK03806 murD UDP-N-acetylmura 88.0 6 0.00013 38.1 11.0 34 71-104 6-39 (438)
434 PLN02172 flavin-containing mon 88.0 0.83 1.8E-05 44.6 5.0 34 71-104 10-43 (461)
435 TIGR03022 WbaP_sugtrans Undeca 87.9 3.4 7.5E-05 40.1 9.4 87 71-169 125-216 (456)
436 PF13450 NAD_binding_8: NAD(P) 87.9 1.1 2.4E-05 31.3 4.4 30 76-105 1-30 (68)
437 PRK10262 thioredoxin reductase 87.9 0.83 1.8E-05 42.0 4.8 35 68-102 3-37 (321)
438 TIGR03206 benzo_BadH 2-hydroxy 87.9 1.9 4.2E-05 37.5 7.0 34 71-104 3-37 (250)
439 PRK08328 hypothetical protein; 87.9 6.6 0.00014 34.5 10.3 121 70-201 26-148 (231)
440 PRK08644 thiamine biosynthesis 87.9 3.6 7.9E-05 35.6 8.5 36 68-103 25-61 (212)
441 PRK08013 oxidoreductase; Provi 87.9 0.72 1.6E-05 43.9 4.5 35 71-105 3-37 (400)
442 PRK05714 2-octaprenyl-3-methyl 87.8 0.62 1.3E-05 44.3 4.1 34 71-104 2-35 (405)
443 TIGR01963 PHB_DH 3-hydroxybuty 87.8 1.7 3.8E-05 37.9 6.7 33 72-104 2-35 (255)
444 COG0654 UbiH 2-polyprenyl-6-me 87.8 0.67 1.5E-05 43.9 4.3 33 71-103 2-34 (387)
445 TIGR03201 dearomat_had 6-hydro 87.8 2.3 5E-05 39.5 7.8 38 71-108 167-204 (349)
446 PLN00093 geranylgeranyl diphos 87.8 1.4 3E-05 42.8 6.5 35 69-103 37-71 (450)
447 PRK00683 murD UDP-N-acetylmura 87.8 3.8 8.3E-05 39.3 9.5 34 71-104 3-36 (418)
448 KOG0029 Amine oxidase [Seconda 87.7 0.78 1.7E-05 45.2 4.7 36 68-103 12-47 (501)
449 PLN02206 UDP-glucuronate decar 87.7 0.83 1.8E-05 44.3 4.9 38 65-102 113-151 (442)
450 PRK06567 putative bifunctional 87.7 0.82 1.8E-05 48.3 5.1 33 70-102 382-414 (1028)
451 COG0451 WcaG Nucleoside-diphos 87.6 2.2 4.8E-05 38.4 7.5 33 73-105 2-35 (314)
452 PLN02650 dihydroflavonol-4-red 87.6 2.4 5.3E-05 39.3 7.9 34 71-104 5-39 (351)
453 PRK06124 gluconate 5-dehydroge 87.6 2.5 5.3E-05 37.1 7.5 34 71-104 11-45 (256)
454 COG4091 Predicted homoserine d 87.6 4 8.8E-05 38.0 8.8 32 71-102 17-49 (438)
455 PRK12831 putative oxidoreducta 87.6 0.96 2.1E-05 44.1 5.3 34 70-103 139-172 (464)
456 TIGR02415 23BDH acetoin reduct 87.6 2.6 5.7E-05 36.8 7.7 32 72-103 1-33 (254)
457 COG0821 gcpE 1-hydroxy-2-methy 87.6 5.3 0.00011 36.9 9.5 151 83-256 38-192 (361)
458 PRK08849 2-octaprenyl-3-methyl 87.5 0.87 1.9E-05 43.0 4.8 32 72-103 4-35 (384)
459 PRK05732 2-octaprenyl-6-methox 87.5 0.69 1.5E-05 43.6 4.1 33 70-102 2-37 (395)
460 PF07992 Pyr_redox_2: Pyridine 87.4 1 2.2E-05 37.9 4.7 30 73-102 1-30 (201)
461 PF13477 Glyco_trans_4_2: Glyc 87.4 2.3 5E-05 33.4 6.6 78 73-151 1-82 (139)
462 PRK02705 murD UDP-N-acetylmura 87.4 5.9 0.00013 38.4 10.7 117 73-199 2-138 (459)
463 TIGR01019 sucCoAalpha succinyl 87.4 7.5 0.00016 35.4 10.6 107 71-185 6-131 (286)
464 PRK07364 2-octaprenyl-6-methox 87.4 0.79 1.7E-05 43.6 4.5 34 71-104 18-51 (415)
465 PRK12935 acetoacetyl-CoA reduc 87.4 3.7 8E-05 35.7 8.5 31 71-101 6-37 (247)
466 PRK04663 murD UDP-N-acetylmura 87.3 14 0.00031 35.6 13.2 113 71-199 7-137 (438)
467 PRK05650 short chain dehydroge 87.3 2.5 5.5E-05 37.5 7.5 33 72-104 1-34 (270)
468 PRK11579 putative oxidoreducta 87.2 2.9 6.4E-05 38.9 8.2 143 71-229 4-151 (346)
469 PLN02986 cinnamyl-alcohol dehy 87.2 2.8 6E-05 38.4 7.9 34 71-104 5-39 (322)
470 COG3967 DltE Short-chain dehyd 87.2 1.6 3.5E-05 37.7 5.6 76 70-149 4-84 (245)
471 PLN02256 arogenate dehydrogena 87.2 3.5 7.7E-05 37.9 8.4 34 70-103 35-68 (304)
472 cd01976 Nitrogenase_MoFe_alpha 87.1 2.4 5.1E-05 40.9 7.6 88 71-172 300-391 (421)
473 cd08285 NADP_ADH NADP(H)-depen 87.1 3 6.4E-05 38.6 8.1 94 70-169 166-261 (351)
474 TIGR03315 Se_ygfK putative sel 87.1 1.4 3E-05 47.0 6.4 34 71-104 537-570 (1012)
475 TIGR01316 gltA glutamate synth 87.0 1.2 2.7E-05 43.1 5.6 34 70-103 132-165 (449)
476 PRK07588 hypothetical protein; 87.0 1 2.2E-05 42.5 5.0 33 72-104 1-33 (391)
477 PRK07791 short chain dehydroge 87.0 3 6.5E-05 37.6 7.9 34 70-103 5-39 (286)
478 TIGR02263 benz_CoA_red_C benzo 87.0 3 6.5E-05 39.6 8.1 103 70-172 232-355 (380)
479 TIGR01289 LPOR light-dependent 86.9 2.2 4.8E-05 39.1 7.1 35 70-104 2-38 (314)
480 PRK12744 short chain dehydroge 86.9 3.9 8.4E-05 35.9 8.4 32 71-102 8-40 (257)
481 PRK08762 molybdopterin biosynt 86.9 5.5 0.00012 37.7 9.9 124 68-202 132-256 (376)
482 TIGR01181 dTDP_gluc_dehyt dTDP 86.9 3.1 6.6E-05 37.5 7.9 72 73-151 1-81 (317)
483 PRK13512 coenzyme A disulfide 86.9 1 2.3E-05 43.4 5.0 34 71-104 1-36 (438)
484 PRK07578 short chain dehydroge 86.8 3.9 8.4E-05 34.4 8.1 60 73-151 2-63 (199)
485 PLN00141 Tic62-NAD(P)-related 86.8 1.6 3.4E-05 38.5 5.8 34 71-104 17-51 (251)
486 PRK08936 glucose-1-dehydrogena 86.8 3.6 7.8E-05 36.3 8.2 32 71-102 7-39 (261)
487 TIGR02853 spore_dpaA dipicolin 86.7 1.6 3.5E-05 39.7 6.0 34 71-104 151-184 (287)
488 PRK06184 hypothetical protein; 86.7 1.1 2.3E-05 44.1 5.2 34 71-104 3-36 (502)
489 PRK06270 homoserine dehydrogen 86.7 9.5 0.00021 35.6 11.2 125 70-199 1-147 (341)
490 TIGR02032 GG-red-SF geranylger 86.7 1.1 2.3E-05 40.1 4.8 33 73-105 2-34 (295)
491 PRK06720 hypothetical protein; 86.6 3.9 8.6E-05 34.0 7.8 34 70-103 15-49 (169)
492 PRK09880 L-idonate 5-dehydroge 86.6 2.4 5.3E-05 39.2 7.2 91 71-169 170-261 (343)
493 PRK07208 hypothetical protein; 86.6 1.1 2.3E-05 43.7 5.0 35 70-104 3-37 (479)
494 PRK07832 short chain dehydroge 86.6 3.1 6.7E-05 37.0 7.7 33 72-104 1-34 (272)
495 PRK12779 putative bifunctional 86.6 1.4 3.1E-05 46.8 6.2 35 70-104 305-339 (944)
496 PRK02006 murD UDP-N-acetylmura 86.5 7.1 0.00015 38.4 10.7 34 71-104 7-40 (498)
497 PRK14478 nitrogenase molybdenu 86.5 3.8 8.2E-05 40.2 8.7 88 71-172 324-415 (475)
498 KOG1502 Flavonol reductase/cin 86.5 2.8 6E-05 38.8 7.3 37 70-106 5-42 (327)
499 PRK11749 dihydropyrimidine deh 86.5 1.1 2.4E-05 43.4 5.1 34 70-103 139-172 (457)
500 PRK05329 anaerobic glycerol-3- 86.4 3.8 8.2E-05 39.5 8.5 34 70-103 1-34 (422)
No 1
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=100.00 E-value=1.1e-50 Score=378.75 Aligned_cols=241 Identities=55% Similarity=0.925 Sum_probs=237.9
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip 149 (313)
|++||||.|+|+++++++|+++++|+.+++|+++++..+.+..++|+.+.++|.+..++|++.++|++++++.+.++|+|
T Consensus 1 mf~KiLIANRGEIAcRVIRtar~lGi~tVAVYSdaDa~A~hV~~ADEAv~iGpapaaeSYL~~dkIi~Aa~~tGA~AIHP 80 (645)
T COG4770 1 MFSKILIANRGEIACRVIRTARDLGIRTVAVYSDADADALHVRMADEAVHIGPAPAAESYLDIDKIIDAARRTGAQAIHP 80 (645)
T ss_pred CcceEEEeccchhhHHHHHHHHHcCCceEEEEecCCCCchhhhhcchhhhcCCCchhhhhccHHHHHHHHHHhCcccccC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (313)
Q Consensus 150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~ 229 (313)
+|||++||+.+++.+++.|+.++||++++|+.+.||...|+++.++|+|+.|+|.....+.+++..+++++|||++||+.
T Consensus 81 GYGFLSENa~FA~a~~~aGlvfIGP~~~aI~aMGdK~~AK~l~~~AgVp~VPG~~g~~qd~~~~~~~A~eiGyPVlIKAs 160 (645)
T COG4770 81 GYGFLSENADFAQAVEDAGLVFIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAIAEEIGYPVLIKAS 160 (645)
T ss_pred CccccccCHHHHHHHHHCCcEEECCCHHHHHHhccHHHHHHHHHHcCCCccCCCCCcccCHHHHHHHHHhcCCcEEEEec
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred cCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEE
Q 021372 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHT 309 (313)
Q Consensus 230 ~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie 309 (313)
.|+||+|++++.+.+|+.+.++..+++...+|+++.+++|+|+.-++++.++++.|++|+++++++|+||+||||||+||
T Consensus 161 aGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~PRHIEiQV~aD~HGNvv~LgERdCSlQRRhQKVIE 240 (645)
T COG4770 161 AGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPRHIEIQVFADQHGNVVHLGERDCSLQRRHQKVIE 240 (645)
T ss_pred cCCCCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCCceEEEEEEecCCCCEEEeeccccchhhhcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred e
Q 021372 310 E 310 (313)
Q Consensus 310 ~ 310 (313)
|
T Consensus 241 E 241 (645)
T COG4770 241 E 241 (645)
T ss_pred c
Confidence 8
No 2
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-47 Score=353.22 Aligned_cols=237 Identities=61% Similarity=0.987 Sum_probs=233.7
Q ss_pred EEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccCc
Q 021372 74 ILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGF 153 (313)
Q Consensus 74 ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g~ 153 (313)
|||.++|+++.++++.++++|+++++++++++..+.+.+.+|+.+++++.+...+|++.+.+++++++.+..+|+|+|||
T Consensus 1 iLiANRGEIAcRVirTakkmGI~tVAV~Sd~D~~SlHVk~ADeav~ig~a~~~~SYL~~~~I~~aa~~tgaqaihPGYGF 80 (670)
T KOG0238|consen 1 ILIANRGEIACRVIRTAKKMGIRTVAVYSDADRNSLHVKMADEAVCIGPAPAAQSYLRMDKIIDAAKRTGAQAIHPGYGF 80 (670)
T ss_pred CeeccccceeehhhhHHHHhCCeEEEEEccCccccceeecccceeecCCCchhhhhhhHHHHHHHHHhcCCceecCCccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCC
Q 021372 154 LAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGG 233 (313)
Q Consensus 154 ~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~g 233 (313)
++|+..+++.|++.|+.|+||++.+|+.+.||...+++++++|+|+.|+|.....+.+++.+.++++|||+++|+..|+|
T Consensus 81 LSEn~~Fae~c~~~Gi~FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG~~g~~qs~e~~~~~a~eIgyPvMiKa~~GGG 160 (670)
T KOG0238|consen 81 LSENAEFAELCEDAGITFIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPGYHGEDQSDEEAKKVAREIGYPVMIKATAGGG 160 (670)
T ss_pred cccchHHHHHHHHcCCeEECCCHHHHHHhcchHHHHHHHHhcCCccccCcccccccHHHHHHHHHhcCCcEEEEeccCCC
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred CccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEEe
Q 021372 234 GRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHTE 310 (313)
Q Consensus 234 g~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie~ 310 (313)
|+|++++.+++|+++.++..++++..+|+++.+|+|+||+.++++.|++++|++|+.++++||+||+|||+||+|||
T Consensus 161 GkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npRHiEvQv~gD~hGnav~l~ERdCSvQRRnQKiiEE 237 (670)
T KOG0238|consen 161 GKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPRHIEVQVFGDKHGNAVHLGERDCSVQRRNQKIIEE 237 (670)
T ss_pred CcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCCceEEEEEEecCCCcEEEecccccchhhhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998
No 3
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=100.00 E-value=4.4e-44 Score=337.58 Aligned_cols=242 Identities=58% Similarity=0.964 Sum_probs=233.7
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip 149 (313)
|++||||.++|.++..++++++++|++++++++.++....+..++|+.++++|.++.++|.++++++..+...+.|+|+|
T Consensus 1 m~~kiLIanrGeia~ri~ra~~~lGi~tvav~s~~d~~~~~~~~adeav~i~~~~~~~syl~i~~ii~~a~~~gadai~p 80 (449)
T COG0439 1 MFKKILIANRGEIAVRIIRACRELGIETVAVYSEADADALHVALADEAVCIGPAPSADSYLNIDAIIAAAEETGADAIHP 80 (449)
T ss_pred CCceEEEecCchhHHHHHHHHHHhCCeEEEEeccccccchhhhhCceEEEcCCccchhhhhhHHHHHHHHHhcCCceEcc
Confidence 68999999999999999999999999999999999999999999999999988788899999999999999999999999
Q ss_pred ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (313)
Q Consensus 150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~ 229 (313)
++||++|+..+++.+++.|+.++||++++++.+.||..++++++++|||+||+....+.+.+++.++++++||||||||.
T Consensus 81 Gygflsen~~fae~~~~~gl~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs~~~~~~~ee~~~~a~~iGyPVivKa~ 160 (449)
T COG0439 81 GYGFLSENAAFAEACAEAGLTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGSDGAVADNEEALAIAEEIGYPVIVKAA 160 (449)
T ss_pred cchhhhCCHHHHHHHHHcCCeeeCcCHHHHHHhhhHHHHHHHHHHcCCCcCCCCCCCcCCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999655578889999999999999999999
Q ss_pred cCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEE
Q 021372 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHT 309 (313)
Q Consensus 230 ~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie 309 (313)
.|+||+||++|++.++|.+++..+..+....|+++.+++||||++++++.+++++|++|+++++++|+|++|||+||++|
T Consensus 161 ~GgGg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~rhievqv~gD~~g~~i~l~eRdcsiqrr~qkvie 240 (449)
T COG0439 161 AGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRHIEVQVLGDGHGNVIHLGERDCSIQRRHQKVIE 240 (449)
T ss_pred CCCCcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCCceEEEEEEEcCcccEEEEEeccCCCcCCccceee
Confidence 99999999999999999999999999999899989999999999999999999999999999999999999999999999
Q ss_pred ee
Q 021372 310 EI 311 (313)
Q Consensus 310 ~~ 311 (313)
|.
T Consensus 241 ea 242 (449)
T COG0439 241 EA 242 (449)
T ss_pred ec
Confidence 85
No 4
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=2.3e-42 Score=335.04 Aligned_cols=241 Identities=51% Similarity=0.865 Sum_probs=226.0
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip 149 (313)
|++||||+|+|.++.+++++++++|+++++++++++..+.+.+++|+.+.+++.+..++|.+.+.|+++++++++|+|+|
T Consensus 1 ~~~kvLIan~Geia~~iiraar~lGi~~V~v~s~~d~~a~~~~~AD~~~~i~~~~~~~syld~~~i~~~a~~~~~daI~p 80 (499)
T PRK08654 1 MFKKILIANRGEIAIRVMRACRELGIKTVAVYSEADKNALFVKYADEAYPIGPAPPSKSYLNIERIIDVAKKAGADAIHP 80 (499)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCeEEEEeccccccccchhhCCEEEEcCCCCcccCccCHHHHHHHHHHhCCCEEEE
Confidence 57999999999999999999999999999999888888888899999998887777788999999999999999999999
Q ss_pred ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (313)
Q Consensus 150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~ 229 (313)
++|+++|+..+++.+++.|++++||+++++..+.||..++++++++|||+||++...+.+.+++.++++++|||+||||.
T Consensus 81 g~gflsE~~~~a~~~e~~gi~~iGps~~~i~~~~DK~~~k~~l~~~GVpv~p~~~~~v~~~~e~~~~a~~igyPvvIKp~ 160 (499)
T PRK08654 81 GYGFLAENPEFAKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEEGIEDIEEAKEIAEEIGYPVIIKAS 160 (499)
T ss_pred CCCccccCHHHHHHHHHCCCcEECCCHHHHHHhCCHHHHHHHHHHcCcCCCCCcCcCCCCHHHHHHHHHHhCCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999998632378999999999999999999999
Q ss_pred cCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEE
Q 021372 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHT 309 (313)
Q Consensus 230 ~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie 309 (313)
.|+||+|++++++.+||.++++.+.......++++.+++|+||+|++|+++++++|++|+++++++|+|++||++|+++|
T Consensus 161 ~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~~r~ieVqvl~d~~G~vv~l~~recsiqrr~qk~ie 240 (499)
T PRK08654 161 AGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEKPRHIEIQILADKHGNVIHLGDRECSIQRRHQKLIE 240 (499)
T ss_pred CCCCCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCcEEEEEEEEcCCCCEEEEeeeccccccCccceEE
Confidence 99999999999999999999999887766667778999999999889999999999999999999999999999999988
Q ss_pred e
Q 021372 310 E 310 (313)
Q Consensus 310 ~ 310 (313)
+
T Consensus 241 ~ 241 (499)
T PRK08654 241 E 241 (499)
T ss_pred E
Confidence 6
No 5
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=7.4e-43 Score=335.19 Aligned_cols=240 Identities=52% Similarity=0.878 Sum_probs=230.9
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCC-CCCCcCCHHHHHHHHHhcCCCEEe
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAP-SSQSYLLIPNVLSAAISRGCTMLH 148 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~-~~~~~~~~~~l~~~~~~~~id~vi 148 (313)
+.+||||.++|+++.+++|++.++|++++++++..+..+.|...+|+.|.++... ..+.|++++.+++++++.+.|+|+
T Consensus 6 ~~~KvLVANRgEIAIRvFRAa~ELgi~TVAIys~ED~~S~HR~KADEsY~iG~~~~Pi~aYL~IdeII~iAk~~gaDaIh 85 (1149)
T COG1038 6 KIKKVLVANRGEIAIRVFRAANELGIKTVAIYSEEDRLSLHRFKADESYLIGEGKGPVEAYLSIDEIIRIAKRSGADAIH 85 (1149)
T ss_pred hhheeeeeccchhhHHHHHHHHhcCceEEEEeeccccchhhhccccceeeecCCCCchHHhccHHHHHHHHHHcCCCeec
Confidence 4799999999999999999999999999999999999999999999999987542 246689999999999999999999
Q ss_pred eccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEee
Q 021372 149 PGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKA 228 (313)
Q Consensus 149 p~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP 228 (313)
|+||+++|+..+++.|.+.||.|+||.++.+..+.||...+..+.++|+|+.|.....+++.+++.+++++.|||+++|.
T Consensus 86 PGYGfLSEn~efA~~c~eaGI~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvipgt~~~~~~~ee~~~fa~~~gyPvmiKA 165 (1149)
T COG1038 86 PGYGFLSENPEFARACAEAGITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTDGPIETIEEALEFAEEYGYPVMIKA 165 (1149)
T ss_pred CCcccccCCHHHHHHHHHcCCEEeCCCHHHHHHhccHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcCCcEEEEE
Confidence 99999999999999999999999999999999999999999999999999999987788899999999999999999999
Q ss_pred ccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeE
Q 021372 229 TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTH 308 (313)
Q Consensus 229 ~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~i 308 (313)
.+|+||+|++++.+.++|.+.+.++.+++..+|+++.+++|+||+.++++.|++++|.+|+++|++||+||+||||||+|
T Consensus 166 ~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~pkHIEVQiLgD~~GnvvHLfERDCSvQRRhQKVV 245 (1149)
T COG1038 166 AAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPKHIEVQILGDTHGNVVHLFERDCSVQRRHQKVV 245 (1149)
T ss_pred ccCCCccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhcCcceeEEEEeecCCCCEEEEeecccchhhccceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred E
Q 021372 309 T 309 (313)
Q Consensus 309 e 309 (313)
|
T Consensus 246 E 246 (1149)
T COG1038 246 E 246 (1149)
T ss_pred E
Confidence 7
No 6
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=1.8e-40 Score=321.25 Aligned_cols=240 Identities=52% Similarity=0.855 Sum_probs=222.3
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip 149 (313)
|.+||||+|+|+++++++++++++|+++++++++++..+.+.+++|+.+.+++.+. ++|.+.+.|+++|+++++|+|+|
T Consensus 1 ~~~kvLi~~~geia~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~~~~-~~y~d~~~i~~~a~~~~~D~I~p 79 (472)
T PRK07178 1 MIKKILIANRGEIAVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGADPL-AGYLNPRRLVNLAVETGCDALHP 79 (472)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHcCCeEEEEeCCCccCCccHhhCCEEEEcCCCch-hhhcCHHHHHHHHHHHCCCEEEe
Confidence 47899999999999999999999999999999999999999999999998865443 77999999999999999999999
Q ss_pred ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (313)
Q Consensus 150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~ 229 (313)
++|+++|+..+++.+++.|++++|++++++..+.||..++++|+++|||+|+++...+.+.+++.++++++|||+||||.
T Consensus 80 g~g~lse~~~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~l~~~GIp~pp~~~~~~~~~~e~~~~~~~igyPvvvKp~ 159 (472)
T PRK07178 80 GYGFLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSEGNLADLDEALAEAERIGYPVMLKAT 159 (472)
T ss_pred CCCCcccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCcCCCCHHHHHHHHHHcCCcEEEEeC
Confidence 99999999889999999999999999999999999999999999999999998633478899999999999999999999
Q ss_pred cCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEE
Q 021372 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHT 309 (313)
Q Consensus 230 ~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie 309 (313)
.|+||+||+++++.+||.++++.+..+....+++.++++|+||++++|+++++++|.+|+++++++++|+++|++++.+|
T Consensus 160 ~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~~~eiev~v~~d~~G~~v~~~er~~s~~~~~~~~~e 239 (472)
T PRK07178 160 SGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNPKHIEVQILADSHGNVVHLFERDCSIQRRNQKLIE 239 (472)
T ss_pred CCCCCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCCeEEEEEEEEECCCCEEEEEccccceEecCcceEE
Confidence 99999999999999999999998877666666677899999998889999999999999999999999999999999876
Q ss_pred e
Q 021372 310 E 310 (313)
Q Consensus 310 ~ 310 (313)
+
T Consensus 240 ~ 240 (472)
T PRK07178 240 I 240 (472)
T ss_pred E
Confidence 4
No 7
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=100.00 E-value=3.9e-40 Score=318.50 Aligned_cols=241 Identities=50% Similarity=0.837 Sum_probs=221.1
Q ss_pred ccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (313)
Q Consensus 69 ~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi 148 (313)
+|++||||+|+|+++++++++++++|+++++++++.+....+..++|+.+.++|....++|.+.+.++++++++++|+|+
T Consensus 3 ~~~~~vLi~~~geia~~ii~aa~~lG~~~v~~~s~~d~~~~~~~~aD~~~~i~p~~~~~~y~d~~~i~~~a~~~~~daI~ 82 (467)
T PRK12833 3 SRIRKVLVANRGEIAVRIIRAARELGMRTVAACSDADRDSLAARMADEAVHIGPSHAAKSYLNPAAILAAARQCGADAIH 82 (467)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHcCCeEEEEECCCCCCChhHHhCCEEEecCCCCccccccCHHHHHHHHHHhCCCEEE
Confidence 35899999999999999999999999999999887777778888999999887767777899999999999999999999
Q ss_pred eccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEee
Q 021372 149 PGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKA 228 (313)
Q Consensus 149 p~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP 228 (313)
|++++++|+..+++.+++.|++++||+++++..+.||..++++|+++|||+|+++...+.+.+++.++++++|||+|+||
T Consensus 83 pg~g~lsE~~~~~~~~e~~gi~~igps~~ai~~~~DK~~~r~~l~~~GIp~~p~~~~~v~~~~e~~~~~~~igyPvvvKp 162 (467)
T PRK12833 83 PGYGFLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARRTARRAGVPTVPGSDGVVASLDAALEVAARIGYPLMIKA 162 (467)
T ss_pred ECCCccccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcCcCcCCHHHHHHHHHHhCCCEEEEE
Confidence 99999999988889999999999999999999999999999999999999999853477899999999999999999999
Q ss_pred ccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeE
Q 021372 229 TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTH 308 (313)
Q Consensus 229 ~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~i 308 (313)
..|+||+|++++++.+||.++++.+..+....++++.+++|+||++++|+++++++|++ .++++++++|++||++++.+
T Consensus 163 ~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~~~ei~v~v~~dg~-~~~~~~~~~~~~~r~~~ki~ 241 (467)
T PRK12833 163 AAGGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARARHIEVQILGDGE-RVVHLFERECSLQRRRQKIL 241 (467)
T ss_pred CCCCCCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEeCCC-cEEEEEEeecccccCCccEE
Confidence 99999999999999999999999887766666777889999999976999999999976 78999999999999999988
Q ss_pred Ee
Q 021372 309 TE 310 (313)
Q Consensus 309 e~ 310 (313)
++
T Consensus 242 e~ 243 (467)
T PRK12833 242 EE 243 (467)
T ss_pred EE
Confidence 76
No 8
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=100.00 E-value=1.2e-39 Score=314.15 Aligned_cols=241 Identities=63% Similarity=1.044 Sum_probs=220.2
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip 149 (313)
|+|||||+|+|.++..++++++++|++|++++++++..+++..++|+.+.+++....++|.+.+.++++|+++++|+|+|
T Consensus 1 ~~kkili~g~g~~~~~~~~aa~~lG~~vv~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p 80 (449)
T TIGR00514 1 MLDKILIANRGEIALRILRACKELGIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIISAAEITGADAIHP 80 (449)
T ss_pred CcceEEEeCCCHHHHHHHHHHHHcCCeEEEEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHHHHHHhCCCEEEe
Confidence 58899999999999999999999999999998877777788899999998866666678999999999999999999999
Q ss_pred ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (313)
Q Consensus 150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~ 229 (313)
++++++|+..++..+++.|++++|++++++..+.||..++++|+++|||+|+++...+.+.+++.++++++|||+|+||.
T Consensus 81 g~g~~se~~~~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~pp~~~~~~~~~~e~~~~~~~ig~PvvvKP~ 160 (449)
T TIGR00514 81 GYGFLSENANFAEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSDGLVEDEEENVRIAKRIGYPVIIKAT 160 (449)
T ss_pred CCCccccCHHHHHHHHHCCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCcCCHHHHHHHHHHhCCCEEEEeC
Confidence 99999999888899999999999999999999999999999999999999997534678999999999999999999999
Q ss_pred cCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEE
Q 021372 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHT 309 (313)
Q Consensus 230 ~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie 309 (313)
.|+||+||+++++.+|+.++++.+.......++...+|+||||+|++|++++++.|.+|+++++++++|+++++++++++
T Consensus 161 ~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~ 240 (449)
T TIGR00514 161 AGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENPRHVEIQVLADKYGNAIYLGERDCSIQRRHQKLLE 240 (449)
T ss_pred CCCCCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCCCeEEEEEEEEcCCCCEEEEeccccCceecccceEE
Confidence 99999999999999999999998766554455567899999999888999999999899999999999999999988876
Q ss_pred e
Q 021372 310 E 310 (313)
Q Consensus 310 ~ 310 (313)
+
T Consensus 241 ~ 241 (449)
T TIGR00514 241 E 241 (449)
T ss_pred E
Confidence 5
No 9
>PRK08462 biotin carboxylase; Validated
Probab=100.00 E-value=1.9e-39 Score=312.62 Aligned_cols=241 Identities=55% Similarity=0.915 Sum_probs=221.0
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip 149 (313)
.+|||||+|+|.++.+++++++++|++|++++++++..+++..++|+.+.+++....++|.+.+.++++|+++++|+|+|
T Consensus 3 ~~k~ili~~~g~~~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~~~~~~~~D~i~p 82 (445)
T PRK08462 3 EIKRILIANRGEIALRAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFP 82 (445)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEechhhcCCchhhhCCEEEEeCCCchhcccCCHHHHHHHHHHcCCCEEEE
Confidence 37999999999999999999999999999999988888899999999998876666678999999999999999999999
Q ss_pred ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (313)
Q Consensus 150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~ 229 (313)
++++++|+..+++.++++|++++|++++++..+.||..++++|+++|||+|+++...+.+.+++.++++++|||+|+||.
T Consensus 83 g~g~lse~~~~a~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~gIp~pp~~~~~~~~~~~~~~~~~~~g~PvvvKP~ 162 (445)
T PRK08462 83 GYGFLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSDGALKSYEEAKKIAKEIGYPVILKAA 162 (445)
T ss_pred CCCccccCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEeC
Confidence 99999999899999999999999999999999999999999999999999997534678999999999999999999999
Q ss_pred cCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEE
Q 021372 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHT 309 (313)
Q Consensus 230 ~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie 309 (313)
.|+||+||++++|.+||.+++.....+....++++.+++||||+|++|++++++++.+|+++++++++|+++|++++.++
T Consensus 163 ~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~~~~g~~~~~g~~~~~~~~~~~~~~~ 242 (445)
T PRK08462 163 AGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNPRHIEVQILGDKHGNVIHVGERDCSLQRRHQKLIE 242 (445)
T ss_pred CCCCCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCCCeEEEEEEEECCCCCEEEEEeccccceecccceEE
Confidence 99999999999999999999987665544445567899999999878999999999889999999999999999888776
Q ss_pred e
Q 021372 310 E 310 (313)
Q Consensus 310 ~ 310 (313)
+
T Consensus 243 ~ 243 (445)
T PRK08462 243 E 243 (445)
T ss_pred E
Confidence 4
No 10
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=100.00 E-value=3.4e-39 Score=312.65 Aligned_cols=240 Identities=48% Similarity=0.829 Sum_probs=218.8
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip 149 (313)
|++||||+|+|.++.+++++++++|+++++++++++..+.+.+++|+.+.+++.+ ..+|.+.+.++++|+++++|+|+|
T Consensus 1 ~~kkiLi~~~ge~a~~~i~aa~~lG~~~v~v~~~~d~~~~~~~~AD~~~~i~~~~-~~~y~d~~~i~~~a~~~~iDaI~p 79 (478)
T PRK08463 1 MIHKILIANRGEIAVRVIRACRDLHIKSVAIYTEPDRECLHVKIADEAYRIGTDP-IKGYLDVKRIVEIAKACGADAIHP 79 (478)
T ss_pred CccEEEEECCCHHHHHHHHHHHHcCCeEEEEECCCccCCcchhhcCEEEEcCCCc-hhcccCHHHHHHHHHHhCCCEEEE
Confidence 5799999999999999999999999999999988888888889999999886543 477899999999999999999999
Q ss_pred ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCccc-CCCHHHHHHHHHHhCCcEEEee
Q 021372 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGL-LQSTEEAVKLADELGFPVMIKA 228 (313)
Q Consensus 150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~-~~~~~~~~~~~~~lg~P~VvKP 228 (313)
++++++|+..+++.+++.|++++|++++++..+.||..++++++++|||+|+++... ..+.+++.++++++|||+|+||
T Consensus 80 g~g~lsE~~~~a~~~e~~Gi~~iGps~~~i~~~~DK~~~k~~l~~~gIpvpp~~~~~~~~~~~~~~~~~~~igyPvvvKP 159 (478)
T PRK08463 80 GYGFLSENYEFAKAVEDAGIIFIGPKSEVIRKMGNKNIARYLMKKNGIPIVPGTEKLNSESMEEIKIFARKIGYPVILKA 159 (478)
T ss_pred CCCccccCHHHHHHHHHCCCceecCCHHHHHhhCcHHHHHHHHHHcCCCCCCCccccCCCCHHHHHHHHHHhCCCEEEEe
Confidence 999999998899999999999999999999999999999999999999998864222 2578889899999999999999
Q ss_pred ccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeE
Q 021372 229 TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTH 308 (313)
Q Consensus 229 ~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~i 308 (313)
..|+||+|++++++.+|+.++++.+..+....++++.+++|+||+|++|+++++++|..|+++++++|+|+++|++|+.+
T Consensus 160 ~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~~~~iev~v~~d~~g~v~~~~er~~s~~~~~~~~i 239 (478)
T PRK08463 160 SGGGGGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQRRHQKVI 239 (478)
T ss_pred CCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCeEEEEEEEEcCCCCEEEEeccCCccccccCceE
Confidence 99999999999999999999999876655555677899999999988999999999998999999999999999999887
Q ss_pred Ee
Q 021372 309 TE 310 (313)
Q Consensus 309 e~ 310 (313)
++
T Consensus 240 e~ 241 (478)
T PRK08463 240 EI 241 (478)
T ss_pred EE
Confidence 65
No 11
>PRK05586 biotin carboxylase; Validated
Probab=100.00 E-value=3.4e-39 Score=310.83 Aligned_cols=241 Identities=58% Similarity=1.016 Sum_probs=220.2
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip 149 (313)
|++||||+|+|.++.+++++++++|++++.++++.+..+++..++|+.+.+++....+.|.+.+.++++|+++++|+|+|
T Consensus 1 ~~kkvli~g~G~~~~~~~~aa~~lG~~~v~v~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~~~~~i~~~~~~~~~d~i~p 80 (447)
T PRK05586 1 MFKKILIANRGEIAVRIIRACREMGIETVAVYSEADKDALHVQLADEAVCIGPASSKDSYLNIQNIISATVLTGAQAIHP 80 (447)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCcEEEEcChHhccCcchhhCCEEEEeCCCChhhcccCHHHHHHHHHHcCCCEEEc
Confidence 57999999999999999999999999999887776777778889999998776556667888899999999999999999
Q ss_pred ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (313)
Q Consensus 150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~ 229 (313)
++++++|+..++..++..|++++|++++++..+.||..++++++++|||+|+++...+.+.+++.++++++|||+||||.
T Consensus 81 ~~~~~~E~~~~a~~~~~~gi~~~g~s~~~~~~~~DK~~~k~~l~~~GIpvp~~~~~~~~~~~e~~~~~~~igyPvvvKP~ 160 (447)
T PRK05586 81 GFGFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAREIMIKAGVPVVPGSEGEIENEEEALEIAKEIGYPVMVKAS 160 (447)
T ss_pred CccccccCHHHHHHHHHCCCcEECcCHHHHHhhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999998534678999999999999999999999
Q ss_pred cCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEE
Q 021372 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHT 309 (313)
Q Consensus 230 ~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie 309 (313)
.|+||+|++++++.+|+.++++.+.......++++.+++|+||+|++|+++++++|..|+++++++++|+++|+++++++
T Consensus 161 ~gggg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~~ei~v~v~~d~~G~~~~~~~~~~~~~~~~~~~~~ 240 (447)
T PRK05586 161 AGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENPKHIEFQILGDNYGNVVHLGERDCSLQRRNQKVLE 240 (447)
T ss_pred CCCCCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCeEEEEEEEECCCCCEEEEeceecceEecccceEE
Confidence 99999999999999999999998877665556667899999999888999999999999999999999999999998877
Q ss_pred e
Q 021372 310 E 310 (313)
Q Consensus 310 ~ 310 (313)
+
T Consensus 241 ~ 241 (447)
T PRK05586 241 E 241 (447)
T ss_pred E
Confidence 4
No 12
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=100.00 E-value=2.7e-38 Score=305.08 Aligned_cols=241 Identities=60% Similarity=1.000 Sum_probs=218.4
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip 149 (313)
|||||||+|+|.++..++++++++|+++++++++++..+.+..++|+.+.+++....++|.+.+.++++|+++++|+|+|
T Consensus 1 ~~k~iLi~g~g~~a~~i~~aa~~~G~~vv~~~~~~d~~a~~~~~ad~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p 80 (451)
T PRK08591 1 MFDKILIANRGEIALRIIRACKELGIKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISAAEITGADAIHP 80 (451)
T ss_pred CcceEEEECCCHHHHHHHHHHHHcCCeEEEEcChhhccCCCHhHCCEEEEeCCCCcccccCCHHHHHHHHHHhCCCEEEE
Confidence 57999999999999999999999999999998887777777889999987766666677889999999999999999999
Q ss_pred ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (313)
Q Consensus 150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~ 229 (313)
++++++|+..++..+++.|++++|++++++..+.||..++++|+++|||+|+++...+.+.+++.++++.++||+|+||.
T Consensus 81 ~~~~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~DK~~~r~~l~~~gIp~pp~~~~~v~~~~~~~~~~~~~g~PvvvKP~ 160 (451)
T PRK08591 81 GYGFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGPVDDEEEALAIAKEIGYPVIIKAT 160 (451)
T ss_pred CCCccccCHHHHHHHHHCCCceECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEEC
Confidence 99989998888899999999999999999999999999999999999999997433678999999999999999999999
Q ss_pred cCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEE
Q 021372 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHT 309 (313)
Q Consensus 230 ~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie 309 (313)
.|+||+||+++++.+|+.++++.+.......+++..+++||||+|++|+++++++|++|+++++++++|++++++++.++
T Consensus 161 ~g~gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~ 240 (451)
T PRK08591 161 AGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRHIEIQVLADGHGNAIHLGERDCSLQRRHQKVLE 240 (451)
T ss_pred CCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcEEEEEEEEcCCCCEEEEecccccceecceeEEE
Confidence 99999999999999999999998876554445567899999999878999999999999999999999999998887765
Q ss_pred e
Q 021372 310 E 310 (313)
Q Consensus 310 ~ 310 (313)
+
T Consensus 241 ~ 241 (451)
T PRK08591 241 E 241 (451)
T ss_pred E
Confidence 4
No 13
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=4.4e-39 Score=304.16 Aligned_cols=239 Identities=47% Similarity=0.808 Sum_probs=229.0
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCC-CCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEA-PSSQSYLLIPNVLSAAISRGCTMLHP 149 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~-~~~~~~~~~~~l~~~~~~~~id~vip 149 (313)
++||||.++|+++.++.|++.+++.+.+++++..+..+.+..-+|+.|.++.. +....|+.++.|+++++++++|+|+|
T Consensus 33 ~~kvlVANRgEIaIRvFRa~tEL~~~tvAiYseqD~~sMHRqKADEaY~iGk~l~PV~AYL~ideii~iak~~~vdavHP 112 (1176)
T KOG0369|consen 33 KNKVLVANRGEIAIRVFRAATELSMRTVAIYSEQDRLSMHRQKADEAYLIGKGLPPVGAYLAIDEIISIAKKHNVDAVHP 112 (1176)
T ss_pred hceeEEecCCcchhHHHHHHhhhcceEEEEEeccchhhhhhhccccceecccCCCchhhhhhHHHHHHHHHHcCCCeecC
Confidence 47999999999999999999999999999999999999999999999988643 44566899999999999999999999
Q ss_pred ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (313)
Q Consensus 150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~ 229 (313)
+|||++|+..+++.+.+.|+.++||+++.+..+.||...+.++-++|+|+.|+...-+++.+++.+++++.|+|+|+|..
T Consensus 113 GYGFLSErsdFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVpvVPGTpgPitt~~EA~eF~k~yG~PvI~KAA 192 (1176)
T KOG0369|consen 113 GYGFLSERSDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAGVPVVPGTPGPITTVEEALEFVKEYGLPVIIKAA 192 (1176)
T ss_pred CccccccchHHHHHHHhcCceEeCCCHHHHHHhhhHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcCCcEEEeec
Confidence 99999999999999999999999999999999999999999999999999999878889999999999999999999999
Q ss_pred cCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEE
Q 021372 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHT 309 (313)
Q Consensus 230 ~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie 309 (313)
.|+||+|++++++.++++++++++.+++.++|+++.+.||+||+-++++.|+.++|..|+++++.||+||+||||||++|
T Consensus 193 yGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrHIEvQllgD~~GNvvHLyERDCSvQRRHQKVVE 272 (1176)
T KOG0369|consen 193 YGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRHIEVQLLGDKHGNVVHLYERDCSVQRRHQKVVE 272 (1176)
T ss_pred ccCCCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCcceeEEEEecccCCCEEEEeecccchhhhhcceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999865
No 14
>PRK12999 pyruvate carboxylase; Reviewed
Probab=100.00 E-value=1.5e-37 Score=323.91 Aligned_cols=241 Identities=52% Similarity=0.883 Sum_probs=223.0
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCC-CCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEA-PSSQSYLLIPNVLSAAISRGCTMLH 148 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~-~~~~~~~~~~~l~~~~~~~~id~vi 148 (313)
|++||||+|+|+++.+++++++++|+++++++++.+..+.+...+|+.+.+++. ...++|.+++.++++++++++|+|+
T Consensus 4 ~~kkvLianrGeiavri~raa~elGi~~Vav~s~~D~~a~~~~~ADe~~~i~~~~~~~~~Yldid~Ii~iAk~~~iDaI~ 83 (1146)
T PRK12999 4 KIKKVLVANRGEIAIRIFRAATELGIRTVAIYSEEDKLSLHRFKADEAYLIGEGKHPVRAYLDIDEIIRVAKQAGVDAIH 83 (1146)
T ss_pred cccEEEEECCcHHHHHHHHHHHHcCCEEEEEECCCCcCCchHHhCCEEEEcCCCCCcccCccCHHHHHHHHHHhCCCEEE
Confidence 588999999999999999999999999999998888888889999999988643 2246788999999999999999999
Q ss_pred eccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEee
Q 021372 149 PGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKA 228 (313)
Q Consensus 149 p~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP 228 (313)
|++|+++|+..+++.+++.|++++||+++++..+.||..++++++++|||+|+++...+.+.+++.++++++|||+|+||
T Consensus 84 PgyGflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~l~~~GVPv~P~~~~~v~s~eea~~~a~~iGyPvVVKP 163 (1146)
T PRK12999 84 PGYGFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGSEGPIDDIEEALEFAEEIGYPIMLKA 163 (1146)
T ss_pred eCCCccccCHHHHHHHHHcCCcccCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCCCCHHHHHHHHHHhCCCEEEEE
Confidence 99999999998999999999999999999999999999999999999999998762258899999999999999999999
Q ss_pred ccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeE
Q 021372 229 TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTH 308 (313)
Q Consensus 229 ~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~i 308 (313)
..|+||+|++++++.+||.++++.+..++...++++.+++|+||+|++|+++++++|++|+++++++|+|++||++|+.+
T Consensus 164 ~~GgGGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g~~~ieVqvl~D~~G~vv~l~erdcsvqrr~qk~i 243 (1146)
T PRK12999 164 SAGGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVENPRHIEVQILGDKHGNVVHLYERDCSVQRRHQKVV 243 (1146)
T ss_pred CCCCCCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCeEEEEEEEEECCCCEEEEEccccceeecCccEE
Confidence 99999999999999999999999988777667777899999999998899999999999999999999999999999988
Q ss_pred Ee
Q 021372 309 TE 310 (313)
Q Consensus 309 e~ 310 (313)
|.
T Consensus 244 e~ 245 (1146)
T PRK12999 244 EI 245 (1146)
T ss_pred EE
Confidence 64
No 15
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=100.00 E-value=3.3e-37 Score=320.01 Aligned_cols=238 Identities=51% Similarity=0.832 Sum_probs=221.6
Q ss_pred EEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCC---CCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEA---PSSQSYLLIPNVLSAAISRGCTMLHP 149 (313)
Q Consensus 73 ~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~---~~~~~~~~~~~l~~~~~~~~id~vip 149 (313)
||||.|+|+++.+++++++++|+++++++++.+..+.+...+|+.+.+++. ....+|.+++.++++|+++++|+|+|
T Consensus 1 ~~lianrgeia~ri~ra~~elGi~tVav~s~~D~~s~~~~~ADe~y~v~~~~d~~~~~~Yldid~Ii~iak~~~iDaI~P 80 (1143)
T TIGR01235 1 KILVANRGEIAIRVFRAANELGIRTVAIYSEEDKLSLHRQKADESYQVGEGPDLGPIEAYLSIDEIIRVAKLNGVDAIHP 80 (1143)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEECcccccCcchhhcCEEEEcCCccccCcccccCCHHHHHHHHHHhCCCEEEE
Confidence 699999999999999999999999999999999888999999999988543 22467899999999999999999999
Q ss_pred ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (313)
Q Consensus 150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~ 229 (313)
++|+++|+..+++.+++.|++++||++++++.+.||..++++++++|||+|+++...+.+.+++.++++++|||+||||.
T Consensus 81 GyGflsE~~~~a~~le~~Gi~fiGps~e~i~~~~DK~~ar~la~~~GVPvpp~t~~~v~~~eea~~~ae~iGyPvIVKP~ 160 (1143)
T TIGR01235 81 GYGFLSENSEFADACNKAGIIFIGPKAEVMDQLGDKVAARNLAIKAGVPVVPGTDGPPETMEEVLDFAAAIGYPVIIKAS 160 (1143)
T ss_pred CCCccccCHHHHHHHHHcCCcccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccCcCCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999997534578999999999999999999999
Q ss_pred cCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEE
Q 021372 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHT 309 (313)
Q Consensus 230 ~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie 309 (313)
.|+||+|++++++.+|+.++++.+..++...++++.+++|+||+|++|++|++++|.+|+++++++|+|++||++|+.+|
T Consensus 161 ~GGGGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g~reIeVqVlgD~~G~vv~l~eRdcsvqrr~qk~ie 240 (1143)
T TIGR01235 161 WGGGGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERPRHIEVQLLGDKHGNVVHLFERDCSVQRRHQKVVE 240 (1143)
T ss_pred CCCCCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCCeEEEEEEEEeCCCCEEEEEeccccccccCceEEE
Confidence 99999999999999999999999988777778888999999999889999999999999999999999999999999876
Q ss_pred e
Q 021372 310 E 310 (313)
Q Consensus 310 ~ 310 (313)
+
T Consensus 241 ~ 241 (1143)
T TIGR01235 241 V 241 (1143)
T ss_pred E
Confidence 4
No 16
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=100.00 E-value=2e-36 Score=317.11 Aligned_cols=239 Identities=50% Similarity=0.862 Sum_probs=222.2
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~ 150 (313)
++||||+|+|.++.+++++|+++|+++++++++++..+.+..++|+.+.+++.+..++|.+.+.|+++|+++++|+|+|+
T Consensus 1 ~~kvLI~g~Geia~~iiraak~lGi~~v~v~sd~d~~a~~v~~AD~~v~l~~~~~~~sy~d~e~Il~~a~~~~idaIiPG 80 (1201)
T TIGR02712 1 FDTVLIANRGEIAVRIIRTLRRMGIRSVAVYSDADAASQHVLDADEAVCLGGAPAAESYLDIDKILAAAKKTGAQAIHPG 80 (1201)
T ss_pred CcEEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCccchhhCCEEEEcCCCCcccCCCCHHHHHHHHHHHCCCEEEeC
Confidence 47999999999999999999999999999999988888889999999988776677889999999999999999999999
Q ss_pred cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeecc
Q 021372 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATA 230 (313)
Q Consensus 151 ~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~ 230 (313)
+++++|+..+++.+++.|++++||++++++.+.||..+|++|+++|||+|+++ ..+.+.+++.++++++|||+||||..
T Consensus 81 ~gflsE~~~~a~~~e~~Gi~~iGps~ea~~~~~DK~~ar~ll~~~GVPt~p~~-~lv~s~dea~~~a~~igyPvVVKP~~ 159 (1201)
T TIGR02712 81 YGFLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGT-GLLSSLDEALEAAKEIGYPVMLKSTA 159 (1201)
T ss_pred CcccccCHHHHHHHHHcCCcEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCce-eecCCHHHHHHHHHhcCCeEEEEECC
Confidence 99999998899999999999999999999999999999999999999998854 47789999999999999999999999
Q ss_pred CCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEEe
Q 021372 231 GGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHTE 310 (313)
Q Consensus 231 g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie~ 310 (313)
|+||+||+++++.+|+.++++.+.+.....+++..+++||||+|++|+++++++|++|+++++++++|+++|++++.+++
T Consensus 160 ggGG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g~~eveV~v~~Dg~g~vv~lg~rd~s~qr~~~k~vee 239 (1201)
T TIGR02712 160 GGGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVENARHVEVQIFGDGKGKVVALGERDCSLQRRNQKVVEE 239 (1201)
T ss_pred CCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEECCCCeEEEeeEEEeeeEecCccEEEE
Confidence 99999999999999999999998776655566678999999997799999999999999999999999999999998876
No 17
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=100.00 E-value=3.6e-35 Score=283.34 Aligned_cols=240 Identities=50% Similarity=0.834 Sum_probs=212.8
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip 149 (313)
|.+||||+|+|.+++.++++++++|+++++++++.+..+....++|+.+.+++....++|.+.+.++++|+++++|+|+|
T Consensus 1 ~~~~ililg~g~~~~~~~~~a~~lG~~~v~~~~~~~~~a~~~~~ad~~~~~~~~~~~~~~~d~~~l~~~~~~~~id~I~p 80 (450)
T PRK06111 1 MFQKVLIANRGEIAVRIIRTCQKLGIRTVAIYSEADRDALHVKMADEAYLIGGPRVQESYLNLEKIIEIAKKTGAEAIHP 80 (450)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCeEEEEechhhccCcchhhCCEEEEcCCCCccccccCHHHHHHHHHHhCCCEEEe
Confidence 57999999999999999999999999999998888777788888999997765555667888999999999999999999
Q ss_pred ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (313)
Q Consensus 150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~ 229 (313)
+++..+|+..+++.++..|++++|++.+++..+.||..++++|+++|||+|++....+.+.+++.++++.++||+|+||.
T Consensus 81 ~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~e~~~~~~~~~~P~VvKP~ 160 (450)
T PRK06111 81 GYGLLSENASFAERCKEEGIVFIGPSADIIAKMGSKIEARRAMQAAGVPVVPGITTNLEDAEEAIAIARQIGYPVMLKAS 160 (450)
T ss_pred CCCccccCHHHHHHHHHCCCeEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcCcCcCCHHHHHHHHHHhCCCEEEEeC
Confidence 98888888778889999999999999999999999999999999999999997323568899998999999999999999
Q ss_pred cCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEE
Q 021372 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHT 309 (313)
Q Consensus 230 ~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie 309 (313)
.|+||+||+++++.+|+.++++.+.......+++.++++||||+|++|++++++.+.+|+++.++.+++++++.+++.++
T Consensus 161 ~g~gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~~ 240 (450)
T PRK06111 161 AGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDPRHIEIQLLADTHGNTVYLWERECSVQRRHQKVIE 240 (450)
T ss_pred CCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCCCcEEEEEEEEcCCCCEEEEEeecccccccccceEE
Confidence 99999999999999999999998754433334557899999999978999999999889999999988888887766554
No 18
>PLN02735 carbamoyl-phosphate synthase
Probab=99.97 E-value=7.3e-29 Score=259.13 Aligned_cols=209 Identities=20% Similarity=0.290 Sum_probs=180.4
Q ss_pred ccEEEEEcCCHh-----------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHH
Q 021372 71 QEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA 139 (313)
Q Consensus 71 ~~~ILIig~g~~-----------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~ 139 (313)
++||||+|+|+. +++++++|+++|+++++++++++..+.+...+|+.+.. +.+++.++++|
T Consensus 574 ~kkvlilG~G~~~igq~iefd~~~v~~~~alr~~G~~tI~v~~npetvstd~~~aD~~y~~--------pl~~e~vl~i~ 645 (1102)
T PLN02735 574 KKKVLILGGGPNRIGQGIEFDYCCCHASFALQDAGYETIMMNSNPETVSTDYDTSDRLYFE--------PLTVEDVLNVI 645 (1102)
T ss_pred CceEEEeCccccccCcccccceeHHHHHHHHHHcCCeEEEEeCCCccccCCcccCCeEEEE--------eCCHHHHHHHH
Confidence 689999999984 46799999999999999999999988888999998865 36799999999
Q ss_pred HhcCCCEEeeccCcCccc---HHHHHHHH---------HcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccC
Q 021372 140 ISRGCTMLHPGYGFLAEN---AVFVEMCR---------EHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLL 207 (313)
Q Consensus 140 ~~~~id~vip~~g~~~e~---~~~~~~l~---------~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~ 207 (313)
+++++|+|+|.+|..... ..+.+.+. ..|+.++|++++++..+.||..++++|+++|||+|++. .+
T Consensus 646 ~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~~GIp~p~~~--~v 723 (1102)
T PLN02735 646 DLERPDGIIVQFGGQTPLKLALPIQKYLDKNPPPSASGNGNVKIWGTSPDSIDAAEDRERFNAILNELKIEQPKGG--IA 723 (1102)
T ss_pred HHhCCCEEEECCCchHHHHHHHHHHHHHHhccchhhhhcCCeEEECCCHHHHHHhcCHHHHHHHHHHcCCCCCCee--Ee
Confidence 999999999987632221 11222222 23799999999999999999999999999999999995 78
Q ss_pred CCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCC
Q 021372 208 QSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY 287 (313)
Q Consensus 208 ~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~ 287 (313)
.+.+++.++++++|||+||||..|+||+|+.++++.+||.++++.+.... ++++++||+||++++|++|++++|++
T Consensus 724 ~s~eea~~~a~~iGyPvvVKP~~g~gG~G~~iV~~~eeL~~al~~a~~~~----~~~~vlVEefI~~g~Ei~V~vl~D~~ 799 (1102)
T PLN02735 724 RSEADALAIAKRIGYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETAVEVD----PERPVLVDKYLSDATEIDVDALADSE 799 (1102)
T ss_pred CCHHHHHHHHHhcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHHhc----CCCCEEEEEecCCcEEEEEEEEECCC
Confidence 89999999999999999999999999999999999999999999886542 34689999999866999999999988
Q ss_pred CCEEEE
Q 021372 288 GNVVHF 293 (313)
Q Consensus 288 G~vv~~ 293 (313)
|+++.+
T Consensus 800 G~vv~~ 805 (1102)
T PLN02735 800 GNVVIG 805 (1102)
T ss_pred CCEEEe
Confidence 888753
No 19
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.96 E-value=1.8e-28 Score=256.66 Aligned_cols=209 Identities=24% Similarity=0.328 Sum_probs=182.2
Q ss_pred ccEEEEEcCCHh-----------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHH
Q 021372 71 QEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA 139 (313)
Q Consensus 71 ~~~ILIig~g~~-----------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~ 139 (313)
.+||||+|+|++ |..++++|+++|++|++++++++....+..++|+.+..+ .+.+.+.+++
T Consensus 6 ~~kvlviG~g~~~igq~~e~d~sg~q~~kalke~G~~vi~v~~np~~~~~~~~~aD~~y~~p--------~~~~~v~~ii 77 (1050)
T TIGR01369 6 IKKILVIGSGPIVIGQAAEFDYSGSQACKALKEEGYRVILVNSNPATIMTDPEMADKVYIEP--------LTPEAVEKII 77 (1050)
T ss_pred CcEEEEECCCcchhcchhcccchHHHHHHHHHHcCCEEEEEecchhhccCChhcCCEEEECC--------CCHHHHHHHH
Confidence 689999999984 568999999999999999988877777788899988542 3568899999
Q ss_pred HhcCCCEEeeccCc-Ccc----cHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHH
Q 021372 140 ISRGCTMLHPGYGF-LAE----NAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAV 214 (313)
Q Consensus 140 ~~~~id~vip~~g~-~~e----~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~ 214 (313)
+++++|+|+|+++. ... .......+++.|++++|++++++..+.||..++++|+++|+|+|++. .+.+.+++.
T Consensus 78 ~~e~~DaIlp~~gg~~~l~la~~l~~~~~le~~Gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~--~v~s~~e~~ 155 (1050)
T TIGR01369 78 EKERPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPESE--IAHSVEEAL 155 (1050)
T ss_pred HHhCCCEEEECCCChhHHHHHhhHHHHhHHHHCCCEEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCee--ecCCHHHHH
Confidence 99999999998652 212 12345678899999999999999999999999999999999999995 889999999
Q ss_pred HHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372 215 KLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 293 (313)
Q Consensus 215 ~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~ 293 (313)
++++++|||+||||..|.||+|+.++++.+|+.+++......+ ...++||||||+|.+|+++++++|.+|+++.+
T Consensus 156 ~~~~~igyPvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~~~s----~~~~vlVEe~I~G~~Eiev~v~rd~~g~~~~~ 230 (1050)
T TIGR01369 156 AAAKEIGYPVIVRPAFTLGGTGGGIAYNREELKEIAERALSAS----PINQVLVEKSLAGWKEIEYEVMRDSNDNCITV 230 (1050)
T ss_pred HHHHHhCCCeEEECCCCCCCCCeEEECCHHHHHHHHHHHHhcC----CCCcEEEEEcccCceEEEEEEEEeCCCCEEEE
Confidence 9999999999999999999999999999999999888765432 23689999999998899999999999998877
No 20
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=99.96 E-value=4.5e-28 Score=229.00 Aligned_cols=205 Identities=19% Similarity=0.300 Sum_probs=171.6
Q ss_pred EEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccC
Q 021372 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYG 152 (313)
Q Consensus 73 ~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g 152 (313)
||||+|+|..++.++++|+++|++|++++.+++.+ ...++|+.+..+ +.+.+.+.++++++++|+|++..+
T Consensus 1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~~~~~--~~~~ad~~~~~~-------~~d~~~l~~~~~~~~id~v~~~~e 71 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYANAP--AMQVAHRSYVIN-------MLDGDALRAVIEREKPDYIVPEIE 71 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCc--hhhhCceEEEcC-------CCCHHHHHHHHHHhCCCEEEeccC
Confidence 69999999999999999999999999997766544 456889887553 467899999999999999998764
Q ss_pred cCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHH-HHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccC
Q 021372 153 FLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETM-KNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAG 231 (313)
Q Consensus 153 ~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l-~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g 231 (313)
... ......+++.|++++ ++++++..+.||..+++++ +++|||+|+++ .+.+.+++.++++++|||+|+||..|
T Consensus 72 ~v~--~~~~~~l~~~g~~~~-~~~~~~~~~~dK~~~~~~~~~~~gip~p~~~--~~~~~~~~~~~~~~~g~P~VvKP~~g 146 (380)
T TIGR01142 72 AIA--TDALFELEKEGYFVV-PNARATKLTMNREGIRRLAAEELGLPTSRYM--FADSLDELREAVEKIGYPCVVKPVMS 146 (380)
T ss_pred ccC--HHHHHHHHhcCCeeC-CCHHHHHHhhCHHHHHHHHHHHCCCCCCCce--EeCCHHHHHHHHHHcCCCEEEEECCC
Confidence 322 233456788898754 8999999999999999985 89999999985 88899999888899999999999999
Q ss_pred CCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372 232 GGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 293 (313)
Q Consensus 232 ~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~ 293 (313)
++|+||+++++.+|+..+++.+..... ..++++|+||||+|..|+++.++++.+|++..+
T Consensus 147 ~~s~gv~~v~~~~el~~~~~~~~~~~~--~~~~~~ivEe~i~~~~E~sv~~~~~~~g~~~~~ 206 (380)
T TIGR01142 147 SSGKGQSVVRGPEDIEKAWEYAQEGAR--GGAGRVIVEEFIDFDYEITLLTVRHVDGNTTFC 206 (380)
T ss_pred cCCCCeEEECCHHHHHHHHHHHHhhcc--CCCCCEEEEEecCCCEEEEEEEEEcCCCCEEEe
Confidence 999999999999999999988754211 123589999999986899999998777775543
No 21
>PLN02735 carbamoyl-phosphate synthase
Probab=99.96 E-value=5.7e-28 Score=252.43 Aligned_cols=210 Identities=23% Similarity=0.333 Sum_probs=179.0
Q ss_pred cccEEEEEcCCHh-----------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHH
Q 021372 70 RQEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSA 138 (313)
Q Consensus 70 ~~~~ILIig~g~~-----------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~ 138 (313)
.++||||+|+|++ |..++++|+++|++|+++++++........++|+.+ +.| .+.+.+.++
T Consensus 22 ~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np~t~~~~~~~aD~~y-i~p-------~~~e~v~~i 93 (1102)
T PLN02735 22 DLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNPATIMTDPETADRTY-IAP-------MTPELVEQV 93 (1102)
T ss_pred CCCEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCCcccccCChhhCcEEE-eCC-------CCHHHHHHH
Confidence 3789999999985 678999999999999999888866555567889876 432 456788999
Q ss_pred HHhcCCCEEeeccC-cCcccHH----HHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHH
Q 021372 139 AISRGCTMLHPGYG-FLAENAV----FVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEA 213 (313)
Q Consensus 139 ~~~~~id~vip~~g-~~~e~~~----~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~ 213 (313)
++++++|+|+|+++ ....+.. ....++.+|++++|++++++..+.||..++++|+++|||+|+++ .+.+.+++
T Consensus 94 i~~e~~D~Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~--~v~s~eea 171 (1102)
T PLN02735 94 IAKERPDALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKTPPSG--IATTLDEC 171 (1102)
T ss_pred HHHhCCCEEEECCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCee--EeCCHHHH
Confidence 99999999999764 2223311 13567889999999999999999999999999999999999995 78899999
Q ss_pred HHHHHHhC-CcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEE
Q 021372 214 VKLADELG-FPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVH 292 (313)
Q Consensus 214 ~~~~~~lg-~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~ 292 (313)
.++++++| ||+||||..+.||+|+.+++|.+||.++++.....+ .++++||||||.|.+|+++++++|.+|+++.
T Consensus 172 ~~~~~~iG~yPvVVKP~~~~GG~Gv~iv~n~eEL~~a~~~a~~~s----~~~~VLVEe~I~G~kE~ev~Vl~D~~g~~i~ 247 (1102)
T PLN02735 172 FEIAEDIGEFPLIIRPAFTLGGTGGGIAYNKEEFETICKAGLAAS----ITSQVLVEKSLLGWKEYELEVMRDLADNVVI 247 (1102)
T ss_pred HHHHHHhCCCCEEEEeCCCCCCCceEEECCHHHHHHHHHHHHhcC----CCCeEEEEEecCCCeEEEEEEEEcCCCCEEE
Confidence 89999998 999999999999999999999999999998765322 3578999999999889999999998788876
Q ss_pred E
Q 021372 293 F 293 (313)
Q Consensus 293 ~ 293 (313)
+
T Consensus 248 v 248 (1102)
T PLN02735 248 I 248 (1102)
T ss_pred E
Confidence 6
No 22
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.96 E-value=1.3e-27 Score=250.93 Aligned_cols=211 Identities=23% Similarity=0.315 Sum_probs=180.1
Q ss_pred cccEEEEEcCCHh-----------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHH
Q 021372 70 RQEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSA 138 (313)
Q Consensus 70 ~~~~ILIig~g~~-----------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~ 138 (313)
.++||||+|+|++ |..++++|+++|++|+++++++.....+..++|+.+..+ .+.+.+.++
T Consensus 6 ~~~kvLiig~G~~~igq~~e~d~sg~~~~~aLke~G~~vi~v~~~p~~~~~~~~~aD~~y~~p--------~~~e~l~~i 77 (1066)
T PRK05294 6 DIKKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEP--------ITPEFVEKI 77 (1066)
T ss_pred CCCEEEEECCchhhhcccccccchHHHHHHHHHHcCCEEEEEcCCcccccCCcccCCEEEECC--------CCHHHHHHH
Confidence 4789999999985 467999999999999999888766666677889877442 457899999
Q ss_pred HHhcCCCEEeeccCcC-cccH--H--HHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHH
Q 021372 139 AISRGCTMLHPGYGFL-AENA--V--FVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEA 213 (313)
Q Consensus 139 ~~~~~id~vip~~g~~-~e~~--~--~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~ 213 (313)
++++++|+|+|+.+.. ..+. . ....+++.|++++|++++++..+.||..++++|+++|||+|+++ .+.+.+++
T Consensus 78 i~~e~~D~Iip~~gg~~~l~~~~~l~~~~~le~~Gv~~~g~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~--~v~s~~e~ 155 (1066)
T PRK05294 78 IEKERPDAILPTMGGQTALNLAVELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRSG--IAHSMEEA 155 (1066)
T ss_pred HHHHCcCEEEECCCCchhhhhhHHHHhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCcCCCCee--eeCCHHHH
Confidence 9999999999986422 1221 1 13467889999999999999999999999999999999999995 88999999
Q ss_pred HHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372 214 VKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 293 (313)
Q Consensus 214 ~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~ 293 (313)
.++++++|||+||||..|.||+|+.++++.+|+.++++.....+ ...++|+||||+|.+|+++.+++|.+|+++.+
T Consensus 156 ~~~~~~ig~PvVVKP~~g~gg~Gv~iv~~~eeL~~a~~~~~~~s----~~~~vlvEe~I~G~~Eisv~v~rd~~g~~~~~ 231 (1066)
T PRK05294 156 LEVAEEIGYPVIIRPSFTLGGTGGGIAYNEEELEEIVERGLDLS----PVTEVLIEESLLGWKEYEYEVMRDKNDNCIIV 231 (1066)
T ss_pred HHHHHHcCCCeEEEcCCCCCCCCeEEECCHHHHHHHHHHHHhhC----CCCeEEEEEcccCceEEEEEEEEcCCCCEEEE
Confidence 99999999999999999999999999999999999988654321 23689999999998899999999999999877
Q ss_pred e
Q 021372 294 G 294 (313)
Q Consensus 294 ~ 294 (313)
.
T Consensus 232 ~ 232 (1066)
T PRK05294 232 C 232 (1066)
T ss_pred e
Confidence 4
No 23
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=99.96 E-value=1e-27 Score=221.98 Aligned_cols=208 Identities=20% Similarity=0.252 Sum_probs=171.3
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcC--CcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMG--IPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G--~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi 148 (313)
|+||||+|.|... .++++|+++| ++|++++.++. .+....+|+.+.++ ..+ +..+.+.++++++++++|+|+
T Consensus 1 ~~~vLv~g~~~~~-~~~~~l~~~~~g~~vi~~d~~~~--~~~~~~~d~~~~~p-~~~--~~~~~~~l~~~~~~~~id~ii 74 (326)
T PRK12767 1 MMNILVTSAGRRV-QLVKALKKSLLKGRVIGADISEL--APALYFADKFYVVP-KVT--DPNYIDRLLDICKKEKIDLLI 74 (326)
T ss_pred CceEEEecCCccH-HHHHHHHHhccCCEEEEECCCCc--chhhHhccCcEecC-CCC--ChhHHHHHHHHHHHhCCCEEE
Confidence 5789999987655 8999999994 99999866544 45567888887663 222 233578999999999999999
Q ss_pred eccCcCcc-cHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHH--HHHHhCCcEE
Q 021372 149 PGYGFLAE-NAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVK--LADELGFPVM 225 (313)
Q Consensus 149 p~~g~~~e-~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~--~~~~lg~P~V 225 (313)
|+.+.... .....+.++..|+.+++++++++..+.||..++++|+++|||+|+++ .+.+.+++.+ +...++||+|
T Consensus 75 ~~~d~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~--~~~~~~~~~~~~~~~~~~~P~v 152 (326)
T PRK12767 75 PLIDPELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKSY--LPESLEDFKAALAKGELQFPLF 152 (326)
T ss_pred ECCcHHHHHHHHHHHHHHHcCcEEEeCCHHHHHHHhcHHHHHHHHHHcCCCCCCEE--cccCHHHHHhhhhcccCCCCEE
Confidence 97632111 13445667778999889999999999999999999999999999996 7888888877 5567899999
Q ss_pred EeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeecc
Q 021372 226 IKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERD 297 (313)
Q Consensus 226 vKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~ 297 (313)
+||..|.+|+|++++++.+|+.++++.. .++++||||+| .|+++.++.+.+|+++.+..+.
T Consensus 153 iKP~~g~~s~gv~~v~~~~el~~~~~~~----------~~~lvqeyi~G-~e~~v~~~~~~~G~~~~~~~~~ 213 (326)
T PRK12767 153 VKPRDGSASIGVFKVNDKEELEFLLEYV----------PNLIIQEFIEG-QEYTVDVLCDLNGEVISIVPRK 213 (326)
T ss_pred EEeCCCCCccCeEEeCCHHHHHHHHHhC----------CCeEEEeccCC-ceEEEEEEEcCCCCEEEEEEee
Confidence 9999999999999999999999888753 58999999999 9999999999788888775543
No 24
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=99.96 E-value=3.8e-27 Score=223.82 Aligned_cols=207 Identities=19% Similarity=0.312 Sum_probs=171.4
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~ 150 (313)
.++|||+|+|..++.++++++++|++|++++.+++.+ ...++|..+.++ +.+.+.+.++++++++|+|++.
T Consensus 12 ~~~ilIiG~g~~~~~~~~a~~~~G~~v~~~~~~~~~~--~~~~ad~~~~~~-------~~d~~~l~~~~~~~~id~vi~~ 82 (395)
T PRK09288 12 ATRVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANAP--AMQVAHRSHVID-------MLDGDALRAVIEREKPDYIVPE 82 (395)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCc--hHHhhhheEECC-------CCCHHHHHHHHHHhCCCEEEEe
Confidence 5789999999999999999999999999998766543 345778766543 4567899999999999999987
Q ss_pred cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHH-HCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMK-NAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (313)
Q Consensus 151 ~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~-~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~ 229 (313)
.+... ......+++.|++++ ++++++..+.||..+++++. ++|||+|+++ .+++.+++.+++++++||+|+||.
T Consensus 83 ~e~~~--~~~~~~l~~~g~~~~-~~~~a~~~~~dK~~~k~~l~~~~gip~p~~~--~~~s~~~l~~~~~~~g~P~VvKP~ 157 (395)
T PRK09288 83 IEAIA--TDALVELEKEGFNVV-PTARATRLTMNREGIRRLAAEELGLPTSPYR--FADSLEELRAAVEEIGYPCVVKPV 157 (395)
T ss_pred eCcCC--HHHHHHHHhcCCeeC-CCHHHHHHHhCHHHHHHHHHHhCCCCCCCce--EECCHHHHHHHHHhcCCCEEEEeC
Confidence 64221 233455677788765 89999999999999999994 8999999985 889999999999999999999999
Q ss_pred cCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 293 (313)
Q Consensus 230 ~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~ 293 (313)
.|++|+||++++|.+|+.++++.+..... ....++|+||||+++.|+++.++.+.+|...++
T Consensus 158 ~g~~s~Gv~~v~~~~el~~~~~~~~~~~~--~~~~~~lvEefi~~~~E~sv~~~~~~~~~~~~~ 219 (395)
T PRK09288 158 MSSSGKGQSVVRSPEDIEKAWEYAQEGGR--GGAGRVIVEEFIDFDYEITLLTVRAVDGGTHFC 219 (395)
T ss_pred CCcCCCCeEEECCHHHHHHHHHHHHhhcc--ccCCCEEEEEecCCCEEEEEEEEEcCCCCEEEe
Confidence 99999999999999999999988754321 013689999999955999999999876566555
No 25
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.96 E-value=1.4e-27 Score=250.07 Aligned_cols=211 Identities=24% Similarity=0.331 Sum_probs=179.4
Q ss_pred cccEEEEEcCCHh-----------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHH
Q 021372 70 RQEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSA 138 (313)
Q Consensus 70 ~~~~ILIig~g~~-----------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~ 138 (313)
..+||||+|+|++ |.+++++|+++|++|+++++++........++|..+ +. +.+.+.+.++
T Consensus 6 ~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi~v~~np~~~~~d~~~ad~~y-~e-------p~~~e~l~~i 77 (1068)
T PRK12815 6 DIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVVLVNPNPATIMTDPAPADTVY-FE-------PLTVEFVKRI 77 (1068)
T ss_pred CCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEEEEeCCcchhhcCcccCCeeE-EC-------CCCHHHHHHH
Confidence 4789999999985 678999999999999999888766555566777766 43 2467899999
Q ss_pred HHhcCCCEEeeccCcC-cccHH--H--HHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHH
Q 021372 139 AISRGCTMLHPGYGFL-AENAV--F--VEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEA 213 (313)
Q Consensus 139 ~~~~~id~vip~~g~~-~e~~~--~--~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~ 213 (313)
++++++|+|+|+.+.. ..+.. + ...+++.|++++|++++++..+.||..++++|+++|||+|+++ .+.+.+++
T Consensus 78 i~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIpvp~~~--~v~s~ee~ 155 (1068)
T PRK12815 78 IAREKPDALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPVPESE--IVTSVEEA 155 (1068)
T ss_pred HHHhCcCEEEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcCcCCCCce--eeCCHHHH
Confidence 9999999999976422 12211 1 2357889999999999999999999999999999999999995 88999999
Q ss_pred HHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372 214 VKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 293 (313)
Q Consensus 214 ~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~ 293 (313)
.++++++|||+||||..|.||+|+.+++|.+||.++++.+...+ ...++||||||+|.+|+++++++|.+|+++.+
T Consensus 156 ~~~~~~igyPvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~~~~~s----~~~~vLVEe~I~G~~E~sv~v~rD~~g~~~~~ 231 (1068)
T PRK12815 156 LAFAEKIGFPIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQAS----PIHQCLLEESIAGWKEIEYEVMRDRNGNCITV 231 (1068)
T ss_pred HHHHHHcCCCEEEEECcCCCCCceEEECCHHHHHHHHHHHHhcC----CCCeEEEEEccCCCeEEEEEEEEcCCCCEEEE
Confidence 99999999999999999999999999999999999997765432 23589999999998899999999999998877
Q ss_pred e
Q 021372 294 G 294 (313)
Q Consensus 294 ~ 294 (313)
.
T Consensus 232 ~ 232 (1068)
T PRK12815 232 C 232 (1068)
T ss_pred E
Confidence 3
No 26
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=99.96 E-value=3.6e-27 Score=222.12 Aligned_cols=199 Identities=20% Similarity=0.340 Sum_probs=166.0
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~ 150 (313)
+++|+|+|+|.+++.++.+++++|++|++++.+++. +...++|+.+..+ +.|.+.+.++++ .+|+|...
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~--pa~~~ad~~~~~~-------~~D~~~l~~~a~--~~dvit~e 70 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDS--PAAQVADEVIVAD-------YDDVAALRELAE--QCDVITYE 70 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC--chhHhCceEEecC-------CCCHHHHHHHHh--cCCEEEeC
Confidence 468999999999999999999999999999766654 4467788877542 677888988886 58887643
Q ss_pred cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeecc
Q 021372 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATA 230 (313)
Q Consensus 151 ~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~ 230 (313)
+ ..-.....+.+++. ..++|+++++..+.||..++++|+++|||+|+++ .+.+.+++.++++++|||+|+||..
T Consensus 71 ~--e~i~~~~l~~l~~~--~~~~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~--~v~s~~~l~~~~~~~g~P~vlKp~~ 144 (372)
T PRK06019 71 F--ENVPAEALDALAAR--VPVPPGPDALAIAQDRLTEKQFLDKLGIPVAPFA--VVDSAEDLEAALADLGLPAVLKTRR 144 (372)
T ss_pred c--CCCCHHHHHHHhcC--CeeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCce--EeCCHHHHHHHHHHcCCcEEEEeCC
Confidence 2 11224445556555 3356999999999999999999999999999995 8899999999999999999999998
Q ss_pred C-CCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEe
Q 021372 231 G-GGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFG 294 (313)
Q Consensus 231 g-~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~ 294 (313)
| .+|+|++++++.+|+..+++.+ ...++|+||||++++|+++.++++.+|+++++.
T Consensus 145 ~g~~g~Gv~~v~~~~el~~a~~~~--------~~~~~ivEe~I~~~~E~sv~~~~~~~G~~~~~p 201 (372)
T PRK06019 145 GGYDGKGQWVIRSAEDLEAAWALL--------GSVPCILEEFVPFEREVSVIVARGRDGEVVFYP 201 (372)
T ss_pred CCcCCCCeEEECCHHHHHHHHHhc--------CCCCEEEEecCCCCeEEEEEEEECCCCCEEEeC
Confidence 6 5899999999999999988875 246899999999769999999999889887764
No 27
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=99.96 E-value=2.8e-28 Score=245.37 Aligned_cols=241 Identities=33% Similarity=0.557 Sum_probs=211.8
Q ss_pred cccccccEEEEEcCCHhHHHHHHHHHHcCCc---------EEEEec--CCCcchhhhhhcCceEEccCCCCCCCcCCHHH
Q 021372 66 KVTCRQEKILVANRGEIAVRVIRTAHEMGIP---------CVAVYS--TIDKDALHVKLADESVCIGEAPSSQSYLLIPN 134 (313)
Q Consensus 66 ~~~~~~~~ILIig~g~~a~~v~~al~~~G~~---------vi~v~~--~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~ 134 (313)
++.+..++|||.+.|..|..-+++.++.-|+ .++..+ +-...+.+.+.+|+++.++-..+.+.|.+++.
T Consensus 49 gG~rvI~kILIAnNGiAAvK~irSiRkWayetF~ner~I~FV~MaTpddl~anaeyIrmADqyvevPgGtNnNNyANVdl 128 (2196)
T KOG0368|consen 49 GGHRVIKRILIANNGIAAVKCIRSIRKWAYETFGNERAIQFVCMATPDDLRANAEYIRMADQYVEVPGGTNNNNYANVDL 128 (2196)
T ss_pred cCCceeEEEEEecccHHHHHHHHHHHHHHHHHhCCcceEEEEEecCHHHHHhhHHHhhhhhheeeCCCCCCCCCcccHHH
Confidence 3445578999999999888888888775433 222221 22345677889999988876778888999999
Q ss_pred HHHHHHhcCCCEEeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCc----------
Q 021372 135 VLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSD---------- 204 (313)
Q Consensus 135 l~~~~~~~~id~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~---------- 204 (313)
|++++.+..+|+|.+|||.-+|+..+-+.|.+.||-|+||+..++....||....-+++.+|+|+.+|.-
T Consensus 129 IvdiAe~~~VdAVWaGWGHASENP~LPe~L~~~~IiFiGPP~~aM~sLGDKI~STIvAQsa~vPtlpWSGS~v~~~~~~~ 208 (2196)
T KOG0368|consen 129 IVDIAERTDVDAVWAGWGHASENPELPERLSANGIIFIGPPASAMRALGDKIASTIIAQSAGVPTLPWSGSGVKVEHIED 208 (2196)
T ss_pred HHHHHHhcccceEeecccccccCcchHHHHHhcCcEEECCchHHHHHhcchHHHHHHHHhcCCCcccccCCcceeeeecc
Confidence 9999999999999999999999999999999999999999999999999999999999999999988731
Q ss_pred --------------ccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEee
Q 021372 205 --------------GLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK 270 (313)
Q Consensus 205 --------------~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe 270 (313)
..+.+.+|..+.++.+|||+++|...|+||+|++++++.+++...+++...+ .+..++.+.+
T Consensus 209 ~~~~v~Vpedly~Kacv~~~eegLeaae~IGfPvMIKASEGGGGKGIRkv~n~ddF~~lf~qv~~E----vPGSPIFlMK 284 (2196)
T KOG0368|consen 209 KTNLVSVPEDLYEKACVRNVEEGLEAAEKIGFPVMIKASEGGGGKGIRKVENEDDFKALFKQVQNE----VPGSPIFLMK 284 (2196)
T ss_pred cCCeEecCHHHhhhhhcCCHHHHHHHHHhcCCceEEEeccCCCCcceeeccchHHHHHHHHHHHhh----CCCCceeeee
Confidence 2345788888999999999999999999999999999999999999998766 3668999999
Q ss_pred ccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEEe
Q 021372 271 YVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHTE 310 (313)
Q Consensus 271 ~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie~ 310 (313)
...+.+++.|++++|+.|+++.+++|+||+|||+||+|||
T Consensus 285 ~a~~ARHlEVQlLaDqYGn~IsLfgRDCSiQRRhQKIIEE 324 (2196)
T KOG0368|consen 285 LADQARHLEVQLLADQYGNVISLFGRDCSIQRRHQKIIEE 324 (2196)
T ss_pred cccCcceeeeehhhhhcCCEeEeecccchHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999998
No 28
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.95 E-value=6.5e-27 Score=244.96 Aligned_cols=207 Identities=21% Similarity=0.341 Sum_probs=178.7
Q ss_pred ccEEEEEcCCHh-----------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHH
Q 021372 71 QEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA 139 (313)
Q Consensus 71 ~~~ILIig~g~~-----------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~ 139 (313)
.+||||+|+|++ +++++++|+++|++|++++.++...+.....+|..+. + ..+.+.+++++
T Consensus 554 ~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI~v~~npetvs~d~~~~D~ly~-e-------p~~~e~vl~i~ 625 (1050)
T TIGR01369 554 KKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINYNPETVSTDYDTSDRLYF-E-------PLTFEDVMNII 625 (1050)
T ss_pred CceEEEecCcccccccccccchHHHHHHHHHHhCCCEEEEEecCCccccccccccceEEE-e-------cCCHHHHHHHH
Confidence 579999999975 6788999999999999999888776666677887663 2 24589999999
Q ss_pred HhcCCCEEeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHH
Q 021372 140 ISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADE 219 (313)
Q Consensus 140 ~~~~id~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~ 219 (313)
+++++|+|++.++.. ....++..+++.|++++|++++++..+.||..++++|+++|||+|+++ .+.+.+++.+++++
T Consensus 626 ~~e~idgVI~~~gg~-~~~~la~~le~~Gi~i~G~s~~~i~~~~DK~~f~~lL~~~GIp~P~~~--~v~s~ee~~~~~~~ 702 (1050)
T TIGR01369 626 ELEKPEGVIVQFGGQ-TPLNLAKALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKWK--TATSVEEAVEFASE 702 (1050)
T ss_pred hhcCCCEEEEccCcH-hHHHHHHHHHHCCCcEECCCHHHHHHHCCHHHHHHHHHHCCcCCCCeE--EECCHHHHHHHHHh
Confidence 999999999886422 123567788899999999999999999999999999999999999995 88999999999999
Q ss_pred hCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372 220 LGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 293 (313)
Q Consensus 220 lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~ 293 (313)
+|||+||||..+.||+||.+++|.+|+.++++.+.... ...++++||||+|+.|++|+++.|+ |+++..
T Consensus 703 igyPvIVKP~~~~Gg~gv~iv~~~eeL~~~l~~a~~~s----~~~~vlVeefI~~G~E~~Vd~l~d~-g~v~i~ 771 (1050)
T TIGR01369 703 IGYPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVEVS----PEHPVLIDKYLEDAVEVDVDAVSDG-EEVLIP 771 (1050)
T ss_pred cCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHHhC----CCCCEEEeecCCCCeEEEEEEEEeC-CEEEEE
Confidence 99999999999999999999999999999999876542 3468999999995499999999994 566554
No 29
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=99.95 E-value=1.7e-26 Score=216.27 Aligned_cols=198 Identities=22% Similarity=0.405 Sum_probs=164.6
Q ss_pred EEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccC
Q 021372 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYG 152 (313)
Q Consensus 73 ~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g 152 (313)
+|+|+|+|.+++.++++++++|++|++++.+++ ++...++|+.+.. ++.+.+.+.++++. +|+|...+.
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~--~p~~~~ad~~~~~-------~~~d~~~i~~~a~~--~dvit~e~e 69 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDAN--SPAVQVADHVVLA-------PFFDPAAIRELAES--CDVITFEFE 69 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCC--CChhHhCceeEeC-------CCCCHHHHHHHHhh--CCEEEeCcC
Confidence 489999999999999999999999999976655 4456788987732 25677888888865 677753321
Q ss_pred cCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCC
Q 021372 153 FLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGG 232 (313)
Q Consensus 153 ~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~ 232 (313)
. -.....+.+++.|++++ |+++++..++||..++++|+++|||+|+++ .+.+.+++.++++++|||+|+||..|+
T Consensus 70 ~--i~~~~l~~l~~~g~~~~-p~~~~~~~~~dK~~~k~~l~~~gip~p~~~--~~~~~~~~~~~~~~~g~P~vvKp~~~g 144 (352)
T TIGR01161 70 H--VDVEALEKLEARGVKLF-PSPDALAIIQDRLTQKQFLQKLGLPVPPFL--VIKDEEELDAALQELGFPVVLKARTGG 144 (352)
T ss_pred c--CCHHHHHHHHhCCCeEC-CCHHHHHHhcCHHHHHHHHHHcCCCCCCcc--EeCCHHHHHHHHHHcCCCEEEEeCCCC
Confidence 1 12345567788887755 999999999999999999999999999995 888999999999999999999999986
Q ss_pred -CCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEe
Q 021372 233 -GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFG 294 (313)
Q Consensus 233 -gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~ 294 (313)
+|+|++++++.+|+.++++.+ .+.++|+||||+++.|+++.++++.+|++..+.
T Consensus 145 ~~g~Gv~~v~~~~el~~a~~~~--------~~~~~lvEe~I~~~~E~sv~~~~~~~G~~~~~~ 199 (352)
T TIGR01161 145 YDGRGQYRIRNEADLPQAAKEL--------GDRECIVEEFVPFERELSVIVARSADGETAFYP 199 (352)
T ss_pred CCCCCEEEECCHHHHHHHHHhc--------CCCcEEEEecCCCCeEEEEEEEEcCCCCEEEEC
Confidence 899999999999999988865 235899999999669999999998888877653
No 30
>PRK07206 hypothetical protein; Provisional
Probab=99.95 E-value=1.2e-26 Score=221.88 Aligned_cols=208 Identities=16% Similarity=0.164 Sum_probs=163.6
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchh---hhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCE
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL---HVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~---~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~ 146 (313)
|||++||++++..+..++++++++|+++++++++.+.... ....++....+. +.+.+.++++++++++|+
T Consensus 1 ~~k~~liv~~~~~~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~-------~~~~~~l~~~~~~~~~d~ 73 (416)
T PRK07206 1 MMKKVVIVDPFSSGKFLAPAFKKRGIEPIAVTSSCLLDPYYYASFDTSDFIEVII-------NGDIDDLVEFLRKLGPEA 73 (416)
T ss_pred CCCeEEEEcCCchHHHHHHHHHHcCCeEEEEEcCCCCchhhhcccCcccchhhhc-------CCCHHHHHHHHHHcCCCE
Confidence 6899999999999999999999999999999876643321 111222222121 256889999999999999
Q ss_pred EeeccCcCcccHHHHH-HHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCC---
Q 021372 147 LHPGYGFLAENAVFVE-MCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGF--- 222 (313)
Q Consensus 147 vip~~g~~~e~~~~~~-~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~--- 222 (313)
|+|+.+. ....++ +.+..|++ ++++++++..++||+.|+++|+++|||+|+++ .+.+.+++.+++++++|
T Consensus 74 vi~~~e~---~~~~~a~l~~~l~l~-~~~~~~~~~~~~dK~~~r~~l~~~gi~~p~~~--~~~~~~e~~~~~~~~g~~~~ 147 (416)
T PRK07206 74 IIAGAES---GVELADRLAEILTPQ-YSNDPALSSARRNKAEMINALAEAGLPAARQI--NTADWEEAEAWLRENGLIDR 147 (416)
T ss_pred EEECCCc---cHHHHHHHHHhcCCC-cCCChhhHHHhhCHHHHHHHHHHcCCCcccEE--ecCCHHHHHHHHHhcCCCCC
Confidence 9987531 122333 33455665 36899999999999999999999999999985 78899999999999888
Q ss_pred cEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHh-cCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEE
Q 021372 223 PVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAA-AFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVH 292 (313)
Q Consensus 223 P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~-~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~ 292 (313)
|+||||..|+||+||++++|.+|+.++++++...... ...+..+|+||||+| .||+++++.. +|+++.
T Consensus 148 P~VvKP~~g~gs~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~G-~E~sv~~~~~-~G~~~~ 216 (416)
T PRK07206 148 PVVIKPLESAGSDGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLIG-TEYVVNFVSL-DGNHLV 216 (416)
T ss_pred CEEEeCCCCCCCCCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEcccc-EEEEEEEEEE-CCEEEE
Confidence 9999999999999999999999999999887642100 011358999999999 9999999975 566554
No 31
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=99.95 E-value=2.6e-26 Score=226.08 Aligned_cols=206 Identities=21% Similarity=0.298 Sum_probs=172.3
Q ss_pred cccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372 68 TCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (313)
Q Consensus 68 ~~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v 147 (313)
+++.++|+|+|+|.+++.++++++++|++|++++.+++ .+...++|+.+.. ++.+.+.+.+++++ +|+|
T Consensus 19 ~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~--apa~~~AD~~~v~-------~~~D~~~l~~~a~~--~dvI 87 (577)
T PLN02948 19 GVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLED--CPASSVAARHVVG-------SFDDRAAVREFAKR--CDVL 87 (577)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC--CchhhhCceeeeC-------CCCCHHHHHHHHHH--CCEE
Confidence 35578999999999999999999999999999976655 4456778887743 25778899999977 7877
Q ss_pred eeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEe
Q 021372 148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIK 227 (313)
Q Consensus 148 ip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvK 227 (313)
...... -+....+.+++.|+++ +++++++..++||..+|++|+++|||+|+++ .+.+.+++.++++++|||+|+|
T Consensus 88 t~e~e~--v~~~~l~~le~~gi~v-~ps~~al~i~~DK~~~K~~l~~~GIptp~~~--~v~~~~el~~~~~~ig~P~VvK 162 (577)
T PLN02948 88 TVEIEH--VDVDTLEALEKQGVDV-QPKSSTIRIIQDKYAQKVHFSKHGIPLPEFM--EIDDLESAEKAGDLFGYPLMLK 162 (577)
T ss_pred EEecCC--CCHHHHHHHHhcCCcc-CCCHHHHHHhcCHHHHHHHHHHCCcCCCCeE--EeCCHHHHHHHHHhcCCcEEEE
Confidence 643211 1234557888899875 5899999999999999999999999999985 7888999988899999999999
Q ss_pred eccCC-CCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEee
Q 021372 228 ATAGG-GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGE 295 (313)
Q Consensus 228 P~~g~-gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~ 295 (313)
|..++ +|+|++++++.+|+.++++.+... +.++|+|+||++.+|++|.++++.+|++..++.
T Consensus 163 P~~ggs~g~Gv~~v~~~~eL~~a~~~~~~~------~~~vlvEefI~~~~EisV~v~r~~~G~i~~~p~ 225 (577)
T PLN02948 163 SRRLAYDGRGNAVAKTEEDLSSAVAALGGF------ERGLYAEKWAPFVKELAVMVARSRDGSTRCYPV 225 (577)
T ss_pred eCCCCCCCCCeEEECCHHHHHHHHHHhhCC------CCcEEEEecCCCCeEEEEEEEECCCCCEEEecC
Confidence 99877 799999999999999998876431 368999999999899999999998888877643
No 32
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=99.95 E-value=2.5e-26 Score=219.92 Aligned_cols=208 Identities=15% Similarity=0.142 Sum_probs=158.9
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip 149 (313)
|++||||+|+|.....++++|++.|++|+++..+.++. ...+++.++.++ ..+.+.++++|+++++|+|++
T Consensus 1 ~~~kVLvlG~G~re~al~~~l~~~g~~v~~~~~~~Npg--~~~~a~~~~~~~-------~~d~e~l~~~~~~~~id~Vi~ 71 (435)
T PRK06395 1 MTMKVMLVGSGGREDAIARAIKRSGAILFSVIGHENPS--IKKLSKKYLFYD-------EKDYDLIEDFALKNNVDIVFV 71 (435)
T ss_pred CceEEEEECCcHHHHHHHHHHHhCCCeEEEEECCCChh--hhhcccceeecC-------CCCHHHHHHHHHHhCCCEEEE
Confidence 67899999999988999999999998888774332322 133444433332 467899999999999999998
Q ss_pred ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (313)
Q Consensus 150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~ 229 (313)
+.+... ...+.+.+++.|++++|++.+++..+.||..++++|+++|||+|++| ..+.+.+++..++.+++||+||||.
T Consensus 72 ~~d~~l-~~~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~l~~~gIptp~~~-~~~~~~~e~~~~~~~~~~PvVVKP~ 149 (435)
T PRK06395 72 GPDPVL-ATPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINF-NACFSEKDAARDYITSMKDVAVKPI 149 (435)
T ss_pred CCChHH-HHHHHHHHHHCCCcEECCCHHHHHHhhCHHHHHHHHHHCCcCCCccc-ceeCChHHHHHHHHhhCCCEEEEeC
Confidence 764211 13456677888999999999999999999999999999999998664 3555667777777888999999999
Q ss_pred cCCCCccEEEeCCH-HHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372 230 AGGGGRGMRLAKEP-DEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 293 (313)
Q Consensus 230 ~g~gg~GV~~v~~~-~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~ 293 (313)
.++||+||+++++. +++.+++..+.... .....+||||||+| .|++++++.|+. .+..+
T Consensus 150 ~~sggkGV~v~~~~~~~~~ea~~~~~~~~---~~~~~viIEEfl~G-~E~Svd~~~dg~-~~~~l 209 (435)
T PRK06395 150 GLTGGKGVKVTGEQLNSVDEAIRYAIEIL---DRDGVVLIEKKMTG-EEFSLQAFSDGK-HLSFM 209 (435)
T ss_pred CCCCCCCeEEecCchhhHHHHHHHHHHHh---CCCCcEEEEeecCC-ceEEEEEEEcCC-eEEEe
Confidence 99999999999543 23444444333211 11367999999999 899999999854 44443
No 33
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=99.95 E-value=4e-26 Score=218.68 Aligned_cols=208 Identities=20% Similarity=0.281 Sum_probs=166.3
Q ss_pred cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeecc
Q 021372 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (313)
Q Consensus 72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~ 151 (313)
+||||+|+|..+..+++++++.|+.+.++....+ ........+..+.+ ++.+.+.++++++++++|+++++.
T Consensus 1 ~kiliiG~G~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------~~~d~~~l~~~~~~~~id~vi~~~ 72 (423)
T TIGR00877 1 MKVLVIGNGGREHALAWKLAQSPLVKYVYVAPGN-AGTARLAKNKNVAI-------SITDIEALVEFAKKKKIDLAVIGP 72 (423)
T ss_pred CEEEEECCChHHHHHHHHHHhCCCccEEEEECCC-HHHhhhcccccccC-------CCCCHHHHHHHHHHhCCCEEEECC
Confidence 4899999999999999999999977666543332 22211111222222 356799999999999999999865
Q ss_pred CcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCc-EEEeecc
Q 021372 152 GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFP-VMIKATA 230 (313)
Q Consensus 152 g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P-~VvKP~~ 230 (313)
+.. -...+++.++++|++++|++++++..+.||..++++|+++|||+|++. .+.+.+++.+++++++|| +|+||..
T Consensus 73 e~~-l~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~--~~~~~~~~~~~~~~~g~P~~VvKp~~ 149 (423)
T TIGR00877 73 EAP-LVLGLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYE--VFTDPEEALSYIQEKGAPAIVVKADG 149 (423)
T ss_pred chH-HHHHHHHHHHHCCCeEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCeE--EECCHHHHHHHHHhcCCCeEEEEECC
Confidence 211 013467788899999999999999999999999999999999999984 889999999999999999 9999999
Q ss_pred CCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372 231 GGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 293 (313)
Q Consensus 231 g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~ 293 (313)
|+||+||+++++.+|+.++++.+...... .....+|+||||+| .|+++.++.|+. .+..+
T Consensus 150 ~~gg~Gv~~v~~~~el~~~~~~~~~~~~g-~~~~~~lvEe~i~G-~E~sv~~~~dg~-~~~~~ 209 (423)
T TIGR00877 150 LAAGKGVIVAKTNEEAIKAVEEILEQKFG-DAGERVVIEEFLDG-EEVSLLAFVDGK-TVIPM 209 (423)
T ss_pred CCCCCCEEEECCHHHHHHHHHHHHHHhcC-CCCCeEEEEECccC-ceEEEEEEEcCC-eEEec
Confidence 99999999999999999999887654210 01357999999999 999999999853 44443
No 34
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.95 E-value=2.3e-26 Score=241.48 Aligned_cols=202 Identities=20% Similarity=0.372 Sum_probs=175.2
Q ss_pred ccEEEEEcCCHh-----------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHH
Q 021372 71 QEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA 139 (313)
Q Consensus 71 ~~~ILIig~g~~-----------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~ 139 (313)
++||||+|+|+. +++++++|+++|++|++++.++...+.....+|+.+. + ..+.+.+++++
T Consensus 554 ~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~~G~~vi~v~~npetvs~~~~~aD~~y~-e-------~~~~e~v~~i~ 625 (1066)
T PRK05294 554 RKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREAGYETIMVNCNPETVSTDYDTSDRLYF-E-------PLTLEDVLEII 625 (1066)
T ss_pred CceEEEECccccccccccccchhHHHHHHHHHHCCCEEEEEeCCccccccccchhhheee-c-------CCCHHHHHHHH
Confidence 689999998873 4678999999999999998888777777778888663 2 24689999999
Q ss_pred HhcCCCEEeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHH
Q 021372 140 ISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADE 219 (313)
Q Consensus 140 ~~~~id~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~ 219 (313)
+++++|+|++.++.... ..++..+++.|++++|++++++..+.||..++++|+++|||+|+++ .+.+.+++.+++++
T Consensus 626 ~~e~~dgVi~~~g~~~~-~~la~~le~~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~GIp~P~~~--~~~s~ee~~~~~~~ 702 (1066)
T PRK05294 626 EKEKPKGVIVQFGGQTP-LKLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPNG--TATSVEEALEVAEE 702 (1066)
T ss_pred HHcCCCEEEEEeCchhH-HHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCeE--EECCHHHHHHHHHh
Confidence 99999999987542222 3567788999999999999999999999999999999999999995 88999999999999
Q ss_pred hCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCC
Q 021372 220 LGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY 287 (313)
Q Consensus 220 lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~ 287 (313)
+|||+|+||..+.||+|+.+++|.+|+..+++.+.... .+.++++||||+|..|++|++++|++
T Consensus 703 igyPvvVKP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~~s----~~~~vlIEefI~G~~E~sV~~v~dg~ 766 (1066)
T PRK05294 703 IGYPVLVRPSYVLGGRAMEIVYDEEELERYMREAVKVS----PDHPVLIDKFLEGAIEVDVDAICDGE 766 (1066)
T ss_pred cCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhC----CCCcEEEEecCCCCEEEEEEEEecCC
Confidence 99999999999999999999999999999998876432 34689999999994499999999854
No 35
>PRK06849 hypothetical protein; Provisional
Probab=99.95 E-value=8e-27 Score=221.22 Aligned_cols=208 Identities=13% Similarity=0.097 Sum_probs=165.9
Q ss_pred ccEEEEEcCCH-hHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372 71 QEKILVANRGE-IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (313)
Q Consensus 71 ~~~ILIig~g~-~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip 149 (313)
+++|||+|++. .++.++++++++|++|+++++.+......++++++++.+ +.+..++...++.|+++++++++|+|+|
T Consensus 4 ~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d~~~~~-p~p~~d~~~~~~~L~~i~~~~~id~vIP 82 (389)
T PRK06849 4 KKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRAVDGFYTI-PSPRWDPDAYIQALLSIVQRENIDLLIP 82 (389)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhhheEEe-CCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 68899999765 799999999999999999998877777788899999877 3344343345889999999999999999
Q ss_pred ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHh-CCcEEEee
Q 021372 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL-GFPVMIKA 228 (313)
Q Consensus 150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~l-g~P~VvKP 228 (313)
+.+.........+.+ +.++.+++++.+++..+.||..++++++++|||+|+++ .+++.+++.++..+. +||+|+||
T Consensus 83 ~~e~~~~~a~~~~~l-~~~~~v~~~~~~~~~~~~DK~~~~~~~~~~GipvP~t~--~v~~~~~l~~~~~~~~~~P~vlKP 159 (389)
T PRK06849 83 TCEEVFYLSHAKEEL-SAYCEVLHFDFELLLLLHNKWEFAEQARSLGLSVPKTY--LITDPEAIRNFMFKTPHTPYVLKP 159 (389)
T ss_pred CChHHHhHHhhhhhh-cCCcEEEcCCHHHHHHhhCHHHHHHHHHHcCCCCCCEE--EeCCHHHHHHHhhcCCCCcEEEEe
Confidence 875221112222333 23577888999999999999999999999999999996 889999988877776 89999999
Q ss_pred ccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372 229 TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 293 (313)
Q Consensus 229 ~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~ 293 (313)
..|.+|.|+.++.+.+++..... ....++++||||+| .|+++.++.. +|+++..
T Consensus 160 ~~~~~~~~v~~~~~~~~l~~~~~---------~~~~~~ivQe~I~G-~e~~~~~~~~-~G~v~~~ 213 (389)
T PRK06849 160 IYSRFVRRVDLLPKEAALKELPI---------SKDNPWVMQEFIQG-KEYCSYSIVR-SGELRAH 213 (389)
T ss_pred CcccCCCeEEEecCHHHhccccc---------CCCCCeEEEEEecC-CeEEEEEEEE-CCEEEEE
Confidence 99999999999988544332110 12357999999999 8998888876 5787665
No 36
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.95 E-value=2.4e-26 Score=240.82 Aligned_cols=199 Identities=20% Similarity=0.351 Sum_probs=175.1
Q ss_pred ccEEEEEcCCHh-----------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHH
Q 021372 71 QEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA 139 (313)
Q Consensus 71 ~~~ILIig~g~~-----------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~ 139 (313)
+++|||+|+|+. +++++++|+++|++++++++++...+.+...+|..+.. ..+.+.+++++
T Consensus 555 ~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G~~vI~vn~npetvs~~~~~aD~~y~e--------p~~~e~vl~I~ 626 (1068)
T PRK12815 555 KKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETIMINNNPETVSTDYDTADRLYFE--------PLTLEDVLNVA 626 (1068)
T ss_pred CceEEEecccccccccccccchhHHHHHHHHHHcCCEEEEEeCCccccccccccCceEEEc--------cCCHHHHHHHH
Confidence 689999999874 56779999999999999999988777777788887632 24689999999
Q ss_pred HhcCCCEEeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHH
Q 021372 140 ISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADE 219 (313)
Q Consensus 140 ~~~~id~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~ 219 (313)
+++++|+|++.++.. ....++..+++.|++++|++++++..+.||..++++|+++|||+|+++ .+.+.+++.+++++
T Consensus 627 ~~e~~dgVI~~~g~~-~~~~la~~le~~Gi~ilG~s~e~i~~~~DK~~f~~ll~~~GIp~P~~~--~~~s~ee~~~~~~~ 703 (1068)
T PRK12815 627 EAENIKGVIVQFGGQ-TAINLAKGLEEAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGL--TATDEEEAFAFAKR 703 (1068)
T ss_pred hhcCCCEEEEecCcH-HHHHHHHHHHHCCCeEECCcHHHHHHHcCHHHHHHHHHHcCcCCCCeE--EeCCHHHHHHHHHh
Confidence 999999999976422 124567788899999999999999999999999999999999999995 88999999999999
Q ss_pred hCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCC
Q 021372 220 LGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY 287 (313)
Q Consensus 220 lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~ 287 (313)
+|||+|+||..+.||+|+.++++.+|+.++++.+. ....++|+||||+| .|++++++.|++
T Consensus 704 igyPvVVKP~~~~Gg~gv~iv~~~eeL~~~l~~~~------s~~~~vlIeefI~G-~E~~Vd~i~dg~ 764 (1068)
T PRK12815 704 IGYPVLIRPSYVIGGQGMAVVYDEPALEAYLAENA------SQLYPILIDQFIDG-KEYEVDAISDGE 764 (1068)
T ss_pred cCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHhh------cCCCCEEEEEeecC-ceEEEEEEEcCC
Confidence 99999999999999999999999999999998762 13478999999999 899999999964
No 37
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=99.95 E-value=8.8e-26 Score=215.62 Aligned_cols=207 Identities=18% Similarity=0.204 Sum_probs=165.1
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~ 150 (313)
++||||+|+|..-..++++|++.++...++....+..... .+. ... ..-+..|.+.|+++++++++|+|+++
T Consensus 4 ~~kvLviG~g~rehal~~~~~~~~~~~~~~~~pgn~g~~~--~~~-~~~-----~~~~~~d~~~l~~~a~~~~iD~Vv~g 75 (426)
T PRK13789 4 KLKVLLIGSGGRESAIAFALRKSNLLSELKVFPGNGGFPD--DEL-LPA-----DSFSILDKSSVQSFLKSNPFDLIVVG 75 (426)
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCCCCEEEEECCchHHhc--ccc-ccc-----cCcCcCCHHHHHHHHHHcCCCEEEEC
Confidence 5799999999999999999999986655554343332111 110 000 01235789999999999999999976
Q ss_pred cCcCccc---HHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEe
Q 021372 151 YGFLAEN---AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIK 227 (313)
Q Consensus 151 ~g~~~e~---~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvK 227 (313)
. |+ ..+++.++++|++++||+..++.++.||..+|++|+++|||+|++ ..+.+.+++.+++++++||+|||
T Consensus 76 ~----E~~l~~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~--~~~~~~~ea~~~~~~~~~PvVVK 149 (426)
T PRK13789 76 P----EDPLVAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASY--KTFTEYSSSLSYLESEMLPIVIK 149 (426)
T ss_pred C----chHHHHHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCe--EeeCCHHHHHHHHHhcCCCEEEE
Confidence 5 44 346677889999999999999999999999999999999999998 48889999999999999999999
Q ss_pred eccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372 228 ATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 293 (313)
Q Consensus 228 P~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~ 293 (313)
|..+++|+||+++++.+|+.++++.+.........+..+||||||+| .|+++.++.|+. .++.+
T Consensus 150 p~~~~~gkGV~vv~~~eel~~a~~~~~~~~~~g~~~~~vlIEEfl~G-~E~Sv~~~~dg~-~~~~l 213 (426)
T PRK13789 150 ADGLAAGKGVTVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFMEG-QEASIFAISDGD-SYFLL 213 (426)
T ss_pred eCCCCCCCcEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECcCC-eEEEEEEEECCC-EEEEc
Confidence 99999999999999999999999988643211111247999999999 999999999853 44433
No 38
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=99.95 E-value=9.7e-26 Score=215.84 Aligned_cols=206 Identities=22% Similarity=0.277 Sum_probs=162.7
Q ss_pred cEEEEEcCCHhHHHHHHHHHHc-CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372 72 EKILVANRGEIAVRVIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (313)
Q Consensus 72 ~~ILIig~g~~a~~v~~al~~~-G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~ 150 (313)
+||||+|+|.....+++++++. |+.++++.+.. ... ...++ .+.+ ++.+.+.++++++++++|+|+++
T Consensus 1 ~kvliiG~G~~~~~l~~~l~~~~~~~~i~~~~~n--~g~-~~~~~-~~~~-------~~~d~~~l~~~~~~~~id~vi~~ 69 (420)
T PRK00885 1 MKVLVIGSGGREHALAWKLAQSPLVEKVYVAPGN--AGT-ALLAE-NVVI-------DVTDIEALVAFAKEEGIDLTVVG 69 (420)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEeCCC--HHH-Hhhcc-ccCC-------CCCCHHHHHHHHHHhCCCEEEEC
Confidence 4899999998888899999886 55565553222 221 11222 2222 24778999999999999999976
Q ss_pred cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeecc
Q 021372 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATA 230 (313)
Q Consensus 151 ~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~ 230 (313)
.+.. -...+.+.++++|++++|++.+++..+.||..++++|+++|||+|+++ .+.+.+++.+++++++||+|+||..
T Consensus 70 ~e~~-l~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~--~~~~~~~~~~~~~~~~~P~VvKP~~ 146 (420)
T PRK00885 70 PEAP-LVAGIVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYE--TFTDAEEALAYLDEKGAPIVVKADG 146 (420)
T ss_pred CchH-HHHHHHHHHHHCCCcEECcCHHHHHHHcCHHHHHHHHHHcCCCCCCeE--EeCCHHHHHHHHHHcCCCEEEEeCC
Confidence 5211 113556778889999999999999999999999999999999999985 8899999999999999999999999
Q ss_pred CCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372 231 GGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 293 (313)
Q Consensus 231 g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~ 293 (313)
++||+||+++++.+|+.++++.+............+|+||||+| .|+++.++.|++ .+..+
T Consensus 147 ~~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~G-~E~sv~~~~~g~-~~~~~ 207 (420)
T PRK00885 147 LAAGKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLDG-EEASFFAFVDGE-NVLPL 207 (420)
T ss_pred CCCCCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccCC-cEEEEEEEECCC-ceEec
Confidence 99999999999999999999987642100011358999999999 999999999854 55444
No 39
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.94 E-value=2.5e-25 Score=203.97 Aligned_cols=212 Identities=24% Similarity=0.333 Sum_probs=181.5
Q ss_pred cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (313)
Q Consensus 72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~ 150 (313)
++|...+ ...+|...++++++.|+.|+++++++.+......++|+.+..+ ...+.+..+++++.+|+++|+
T Consensus 6 i~Igqa~efdysG~qac~aLkeeg~~vvlvnsnpAti~td~e~AD~~y~eP--------~~~E~v~~Ii~~E~~Dailp~ 77 (400)
T COG0458 6 IVIGQAAEFDYSGTQACKALKEEGYGVVLVNSNPATIMTDPELADKVYIEP--------ITKEPVEKIIEKERPDAILPT 77 (400)
T ss_pred eeeEeeeeechhHHHHHHHHHhcCCeEEEEcCCCccccCCchhcceeeeec--------CcHHHHHHHHHhcCcceeecc
Confidence 3455555 4446899999999999999999999999988889999999663 668899999999999999999
Q ss_pred cCcC-cccH----HHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEE
Q 021372 151 YGFL-AENA----VFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVM 225 (313)
Q Consensus 151 ~g~~-~e~~----~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~V 225 (313)
.|-. ..+. .....+++.|++++|.+.++++.+.||++++++|+++|+|+| + ....+.+++.+..+.+|||+|
T Consensus 78 ~ggqt~Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~--~~~~~~~e~~~~~~~ig~PvI 154 (400)
T COG0458 78 LGGQTALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-S--RIAHSVEEADEIADEIGYPVI 154 (400)
T ss_pred cCCcchhhHHHHHHHhcchhhcCCEEEecCHHHhhhhhhHHHHHHHHHHcCCCCC-c--cccccHHHHhhhHhhcCCCEE
Confidence 7522 2221 222346677999999999999999999999999999999999 4 388999999999999999999
Q ss_pred EeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhc
Q 021372 226 IKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQV 302 (313)
Q Consensus 226 vKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r 302 (313)
|||.++.||.|..+++|.+||.+........+ +..++++||+|.|+.|+...+++|.+++++.. |++.+
T Consensus 155 VrP~~~lGG~G~~i~~n~eel~~~~~~~l~~s----~~~~vl~eesi~G~ke~e~ev~rd~~~n~ivv----c~men 223 (400)
T COG0458 155 VKPSFGLGGSGGGIAYNEEELEEIIEEGLRAS----PVEEVLIEESIIGWKEFEYEVVRDGKDNCIVV----CNMEN 223 (400)
T ss_pred EecCcCCCCCceeEEeCHHHHHHHHHhccccC----ccccceeeeeecCceEEEEEEEEeCCCCEEEE----EeCCc
Confidence 99999999999999999999999888765443 34689999999999999999999999999888 55544
No 40
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=99.93 E-value=2.6e-24 Score=207.83 Aligned_cols=204 Identities=22% Similarity=0.225 Sum_probs=157.4
Q ss_pred cEEEEEcCCHhHHHHHHHHHHc--CCcEEEEecCCCcchhh--hhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372 72 EKILVANRGEIAVRVIRTAHEM--GIPCVAVYSTIDKDALH--VKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (313)
Q Consensus 72 ~~ILIig~g~~a~~v~~al~~~--G~~vi~v~~~~~~~~~~--~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v 147 (313)
+||||+|+|.....++.++++. |++|+++..+.++.... ..+.+..+.+ +..+.+.++++|+++++|+|
T Consensus 1 mkVLviG~Ggrehal~~~l~~s~~g~~v~~~~g~~Npg~~~~~~~~~~~~~~~-------~~~d~~~l~~~a~~~~id~V 73 (486)
T PRK05784 1 MKVLLVGDGAREHALAEALEKSTKGYKVYALSSYLNPGINSVVKATGGEYFIG-------NINSPEEVKKVAKEVNPDLV 73 (486)
T ss_pred CEEEEECCchhHHHHHHHHHhCCCCCEEEEEECCCChhheeecccccCceEec-------CCCCHHHHHHHHHHhCCCEE
Confidence 4899999999888999999998 99999885533322111 1122333333 24678899999999999999
Q ss_pred eeccCcCccc---HHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcE
Q 021372 148 HPGYGFLAEN---AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPV 224 (313)
Q Consensus 148 ip~~g~~~e~---~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~ 224 (313)
+++. |. ..+++.+++.|++++||+.+++.++.||..++++|+++|||+|+.+ ..+++.+++.++++.. +|+
T Consensus 74 i~g~----E~~l~~glad~l~~~Gi~v~Gps~~aa~le~dK~~~K~~l~~~gIpt~~~~-~~~~~~~ea~~~~~~~-~Pv 147 (486)
T PRK05784 74 VIGP----EEPLFAGVADVLREEGFPVFGASSKCARIEKSKVWARELMWKYSIPGRLRY-KVFYDVEEAAKFIEYG-GSV 147 (486)
T ss_pred EECC----chHHHHHHHHHHHhCCCCEECCcHHHHHHhcCHHHHHHHHHHcCcCCCccc-eEeCCHHHHHHHHhhc-CCE
Confidence 9875 33 3567888999999999999999999999999999999999997533 4778899988888665 699
Q ss_pred EEeeccCCCCccEEEeCCHHH-----HHHHH----HHHHHHHHhcCC--CCcEEEeeccCCCcEEEEEEEEcCCCCEE
Q 021372 225 MIKATAGGGGRGMRLAKEPDE-----FVKLL----QQAKSEAAAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVV 291 (313)
Q Consensus 225 VvKP~~g~gg~GV~~v~~~~e-----l~~~~----~~~~~~~~~~~~--~~~vlvEe~I~G~~e~~v~v~~d~~G~vv 291 (313)
||||..+++|+||.++++.++ +.+++ +.+.... ..++ +..+||||||.| .|++|+++.|+. .++
T Consensus 148 VVKP~~~aggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~-~~~g~~~~~VlIEEfL~G-~E~SV~al~dG~-~~~ 222 (486)
T PRK05784 148 AIKPARQAGGKGVKVIADLQAYLSQEKREALTKSVNDIKEGS-AYYKDVEPKILVEEKVDG-VEYTLQVLTDGE-TVI 222 (486)
T ss_pred EEeeCCCCCCCCEEEECChhHhcchhHHHHHHHHHHHHHHhH-hhccCCCCeEEEEEccCC-eEEEEEEEECCC-eEE
Confidence 999999999999999999873 33444 3332210 1222 368999999999 999999999754 444
No 41
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.93 E-value=2.7e-24 Score=197.33 Aligned_cols=180 Identities=24% Similarity=0.335 Sum_probs=151.2
Q ss_pred ccccEEEEEcCCHh---------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHH
Q 021372 69 CRQEKILVANRGEI---------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA 139 (313)
Q Consensus 69 ~~~~~ILIig~g~~---------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~ 139 (313)
+|+++|.|+-+|.+ +..++++|+++|++|.+++.+.+ +++.+
T Consensus 2 ~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~-----------------------------~~~~~ 52 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGED-----------------------------IAAQL 52 (304)
T ss_pred CCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcc-----------------------------hHHHh
Confidence 45667887776653 68999999999999999853321 12223
Q ss_pred HhcCCCEEeecc-CcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHH
Q 021372 140 ISRGCTMLHPGY-GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLAD 218 (313)
Q Consensus 140 ~~~~id~vip~~-g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~ 218 (313)
+..++|+|++.. +...++..+...++..|++++|++..++..+.||..++++|+++|||+|+++ .+.+.+++..+++
T Consensus 53 ~~~~~D~v~~~~~g~~~~~~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~--~~~~~~~~~~~~~ 130 (304)
T PRK01372 53 KELGFDRVFNALHGRGGEDGTIQGLLELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTPPWI--VLTREEDLLAAID 130 (304)
T ss_pred ccCCCCEEEEecCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEE--EEeCcchHHHHHh
Confidence 345799999874 4456777788899999999999999999999999999999999999999995 7888888888889
Q ss_pred HhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcC
Q 021372 219 ELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADK 286 (313)
Q Consensus 219 ~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~ 286 (313)
+++||+|+||..|++|+||.++++.+++.++++.+... ...+|+||||+| +|+++.++.+.
T Consensus 131 ~~~~P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~------~~~~lvEe~i~G-~E~~v~vi~~~ 191 (304)
T PRK01372 131 KLGLPLVVKPAREGSSVGVSKVKEEDELQAALELAFKY------DDEVLVEKYIKG-RELTVAVLGGK 191 (304)
T ss_pred hcCCCEEEeeCCCCCCCCEEEeCCHHHHHHHHHHHHhc------CCcEEEEcccCC-EEEEEEEECCC
Confidence 99999999999999999999999999999988776432 368999999999 99999998774
No 42
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=99.93 E-value=3.6e-24 Score=195.81 Aligned_cols=214 Identities=21% Similarity=0.264 Sum_probs=170.4
Q ss_pred EEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccCcC
Q 021372 76 VAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFL 154 (313)
Q Consensus 76 Iig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g~~ 154 (313)
..| +.+.++.+++.+++. -.+.++.++.++.......+|+.+.. |. +.++ .++.++++|+++++|+++|+....
T Consensus 3 wfn~~~s~~~~~i~~lr~~-~~~~i~~sh~~~~~~~~~~aD~~~~e-P~-~~~~--yv~~~l~~C~~~~Idv~~P~~~~~ 77 (329)
T PF15632_consen 3 WFNRGFSSQRDIIRSLRAN-RDFTIIASHRDPRAPILYAADEAYLE-PA-DGEE--YVDWCLDFCKEHGIDVFVPGRNRE 77 (329)
T ss_pred EecCCCccHHHHHHHHHcC-CCeEEEEEeCCCCchHHhcCceeeec-CC-CHHH--HHHHHHHHHHHhCCeEEEcCccHH
Confidence 344 455688899999886 56666777778788889999999865 44 4344 489999999999999999986321
Q ss_pred cccHHHHHHHHHcCCceeC-CCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCc---EEEeecc
Q 021372 155 AENAVFVEMCREHGINFIG-PNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFP---VMIKATA 230 (313)
Q Consensus 155 ~e~~~~~~~l~~~gi~~~g-~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P---~VvKP~~ 230 (313)
......+.+++.|+.+.. ++.+++..+.||..+++.+++.|||+|+++ .+++.+++..+.+++++| +++||..
T Consensus 78 -~l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipvp~~~--~v~t~~el~~a~~~l~~~~~~~CvKP~~ 154 (329)
T PF15632_consen 78 -LLAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEANGIPVPPYW--RVRTADELKAAYEELRFPGQPLCVKPAV 154 (329)
T ss_pred -HHHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhCCCCCCCEE--EeCCHHHHHHHHHhcCCCCceEEEeccc
Confidence 135667888999999987 789999999999999999999999999996 899999999999998777 9999999
Q ss_pred CCCCccEEEeC-CHHHHHHHHH---------HHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccch
Q 021372 231 GGGGRGMRLAK-EPDEFVKLLQ---------QAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCS 299 (313)
Q Consensus 231 g~gg~GV~~v~-~~~el~~~~~---------~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s 299 (313)
|.||+|.++++ +.+++...++ .+......+....++||+||++| .||||+++++. |+++....|...
T Consensus 155 g~gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvMeyL~G-~EySVD~l~~~-G~viaaV~R~K~ 231 (329)
T PF15632_consen 155 GIGGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVMEYLPG-PEYSVDCLADE-GRVIAAVPRRKL 231 (329)
T ss_pred CCCcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEecCCCC-CeEEEEEEecC-CEEEEEEEEEec
Confidence 99999999998 5555555443 11111111122468999999999 99999999995 899877666443
No 43
>PLN02257 phosphoribosylamine--glycine ligase
Probab=99.93 E-value=1.3e-23 Score=200.95 Aligned_cols=203 Identities=18% Similarity=0.255 Sum_probs=161.4
Q ss_pred EEEcCCHhHHHHHHHHHHcCC--cEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccC
Q 021372 75 LVANRGEIAVRVIRTAHEMGI--PCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYG 152 (313)
Q Consensus 75 LIig~g~~a~~v~~al~~~G~--~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g 152 (313)
||+|+|.....++.+|++... ++++. ..+ ......++.+.++ . .+..+.+.|+++|+++++|+|+++..
T Consensus 1 lviG~ggrehal~~~l~~s~~~~~~~~~--pgn---~g~~~~~~~~~vp-~---~~~~d~~~l~~~a~~~~id~vvvg~E 71 (434)
T PLN02257 1 LVIGGGGREHALCYALQRSPSCDAVFCA--PGN---AGIATSGDATCVP-D---LDISDSAAVISFCRKWGVGLVVVGPE 71 (434)
T ss_pred CEEcccHHHHHHHHHHHhCCCCCEEEEC--CCC---HHHhhhccceeec-C---CCCCCHHHHHHHHHHcCCCEEEECCc
Confidence 789999888899999988763 33333 222 2233344444341 1 23567899999999999999998752
Q ss_pred cCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCC
Q 021372 153 FLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGG 232 (313)
Q Consensus 153 ~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~ 232 (313)
... ...+++.++..|++++||+.+++.++.||..+|++|+++|||+|++. .+.+.+++.+++++++||+||||..++
T Consensus 72 ~~l-v~~~~d~l~~~Gi~~~Gps~~aa~l~~dK~~~K~~l~~~GIptp~~~--~~~~~~e~~~~~~~~g~PvVVKp~~~~ 148 (434)
T PLN02257 72 APL-VAGLADDLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKYE--TFTDPAAAKKYIKEQGAPIVVKADGLA 148 (434)
T ss_pred hHH-HHHHHHHHHHCCCCEECChHHHHHHHcCHHHHHHHHHHcCCCCCCeE--EeCCHHHHHHHHHHcCCCEEEEcCCCC
Confidence 111 14677888899999999999999999999999999999999999984 788999999999999999999999999
Q ss_pred CCccEEEeCCHHHHHHHHHHHHHHHHhcCC--CCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372 233 GGRGMRLAKEPDEFVKLLQQAKSEAAAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 293 (313)
Q Consensus 233 gg~GV~~v~~~~el~~~~~~~~~~~~~~~~--~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~ 293 (313)
+|+||+++++.+|+.++++.+.... .++ ...+||||||+| .|+++.++.|+. .++.+
T Consensus 149 ~GkGV~iv~~~~el~~a~~~~~~~~--~fg~~~~~vlIEefi~G-~E~Sv~~~~dG~-~~~pl 207 (434)
T PLN02257 149 AGKGVVVAMTLEEAYEAVDSMLVKG--AFGSAGSEVVVEEFLDG-EEASFFALVDGE-NAIPL 207 (434)
T ss_pred CCCCEEEECCHHHHHHHHHHHHhhh--hccCCCCeEEEEECCCC-CEEEEEEEECCC-cEEEE
Confidence 9999999999999999998875321 222 368999999999 899999998854 45544
No 44
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.92 E-value=1.5e-24 Score=201.42 Aligned_cols=211 Identities=19% Similarity=0.248 Sum_probs=155.6
Q ss_pred cccEEEEEcCCHh---------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHH
Q 021372 70 RQEKILVANRGEI---------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAI 140 (313)
Q Consensus 70 ~~~~ILIig~g~~---------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~ 140 (313)
|+++|+|+-+|.+ |..++++|.+.||+|+.++.+.+..-.........+.. +.....++. +....+
T Consensus 2 ~~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~ 76 (333)
T PRK01966 2 MKMRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVVPIGITKDGRWYLIDADNMELAD-DDNDKEDLS----LLILPS 76 (333)
T ss_pred CCcEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEEEEEECCCCCEeeccchhhhccc-ccccccccc----hhcccc
Confidence 4677888877763 88999999999999999976654100000000000000 000000110 011111
Q ss_pred hc--CCCEEeec-cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHH----H
Q 021372 141 SR--GCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEE----A 213 (313)
Q Consensus 141 ~~--~id~vip~-~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~----~ 213 (313)
.. ++|+++|. +|...|+..+..+++.+|+++.|++..++..+.||..++++|+++|||+|+++ .+.+.++ .
T Consensus 77 ~~~~~~D~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~a~~l~~DK~~~k~~l~~~GIp~p~~~--~~~~~~~~~~~~ 154 (333)
T PRK01966 77 GGSEEVDVVFPVLHGPPGEDGTIQGLLELLGIPYVGCGVLASALSMDKILTKRLLAAAGIPVAPYV--VLTRGDWEEASL 154 (333)
T ss_pred ccCccCCEEEEccCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEE--EEeccccchhhH
Confidence 22 69999998 57888999999999999999999999999999999999999999999999985 4444333 3
Q ss_pred HHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372 214 VKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 293 (313)
Q Consensus 214 ~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~ 293 (313)
....+.++||+||||..+++|.||.++++.+|+.++++.+... ++.+|||+||+| +|+++.++.+ ++.+..+
T Consensus 155 ~~~~~~~~~P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~~~------~~~vlvEefI~G-~E~~v~vl~~-~~~~~~~ 226 (333)
T PRK01966 155 AEIEAKLGLPVFVKPANLGSSVGISKVKNEEELAAALDLAFEY------DRKVLVEQGIKG-REIECAVLGN-DPKASVP 226 (333)
T ss_pred HHHHHhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhc------CCcEEEEcCcCC-EEEEEEEECC-CCeEccc
Confidence 4556789999999999999999999999999999999987643 378999999999 9999999987 4444433
Q ss_pred ee
Q 021372 294 GE 295 (313)
Q Consensus 294 ~~ 295 (313)
++
T Consensus 227 ~e 228 (333)
T PRK01966 227 GE 228 (333)
T ss_pred EE
Confidence 33
No 45
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=99.92 E-value=8e-24 Score=193.49 Aligned_cols=175 Identities=21% Similarity=0.278 Sum_probs=142.3
Q ss_pred ccEEEEEcCCHh---------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHh
Q 021372 71 QEKILVANRGEI---------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS 141 (313)
Q Consensus 71 ~~~ILIig~g~~---------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~ 141 (313)
++||.|+-+|.+ +..++++|++.||+++.++.+... ++....+
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~~~~~----------------------------~~~~l~~ 54 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKE----------------------------LVAKLLE 54 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcCCchh----------------------------HHHHhhc
Confidence 456777766653 789999999999999888532110 0111223
Q ss_pred cCCCEEeec-cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHh
Q 021372 142 RGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL 220 (313)
Q Consensus 142 ~~id~vip~-~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~l 220 (313)
.++|.+++. +|...|+..+...++.+|+++.|++++++..+.||..++++|+++|||+|++. .+.+. ....+.+
T Consensus 55 ~~~d~vf~~lhG~~ge~~~i~~~le~~gip~~Gs~~~a~~l~~DK~~~k~~l~~~gIptp~~~--~~~~~---~~~~~~~ 129 (296)
T PRK14569 55 LKPDKCFVALHGEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAK--FLTDK---LVAEDEI 129 (296)
T ss_pred cCCCEEEEeCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHHCHHHHHHHHHHCCCCCCCeE--EEchh---hhhHhhc
Confidence 479999987 46777888999999999999999999999999999999999999999999984 44332 1234678
Q ss_pred CCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcC
Q 021372 221 GFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADK 286 (313)
Q Consensus 221 g~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~ 286 (313)
+||+||||..|++|.||.++++.+||.++++.+.. .+++||||||+| +|++|.++.++
T Consensus 130 ~~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~~-------~~~~lvEefI~G-~E~tv~vl~~~ 187 (296)
T PRK14569 130 SFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASK-------YGEVMIEQWVTG-KEITVAIVNDE 187 (296)
T ss_pred CCCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHHHh-------cCCEEEEccccc-EEEEEEEECCc
Confidence 99999999999999999999999999999987642 257999999999 99999999764
No 46
>PRK02186 argininosuccinate lyase; Provisional
Probab=99.92 E-value=1.5e-23 Score=216.94 Aligned_cols=198 Identities=17% Similarity=0.218 Sum_probs=160.0
Q ss_pred ccEEEEEcCCH--hHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhc-CCCEE
Q 021372 71 QEKILVANRGE--IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISR-GCTML 147 (313)
Q Consensus 71 ~~~ILIig~g~--~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~-~id~v 147 (313)
.++|++++++. .+..++++++++|++|+++++++.........++..+..+ +.+.+.+++.+++. .+++|
T Consensus 2 ~~~~~~ie~~~~~~g~~l~~aa~~lG~~vi~v~~~~~~~~~~~~~~~~~~~~d-------~~d~~~l~~~~~~~~~i~~V 74 (887)
T PRK02186 2 TGIFVFIESNTTGTGELLLRKALLRGFTPYFLTANRGKYPFLDAIRVVTISAD-------TSDPDRIHRFVSSLDGVAGI 74 (887)
T ss_pred ccEEEEEcCCCCccHHHHHHHHHHcCCEEEEEeCCchhhchhhhcceeEEEcC-------CCCHHHHHHHHHhcCCCCEE
Confidence 57899999765 4678999999999999999865543222222344544332 56788999998886 68999
Q ss_pred eeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEe
Q 021372 148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIK 227 (313)
Q Consensus 148 ip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvK 227 (313)
+++.+.. ....+.+.+..|++ |++++++..++||..++++|+++|||+|+++ .+.+.+++.+++++++||+|||
T Consensus 75 ~~~se~~--v~~aa~lae~lglp--g~~~ea~~~~~dK~~~r~~L~~~GIp~P~~~--~v~~~~e~~~~~~~~~~PvVVK 148 (887)
T PRK02186 75 MSSSEYF--IEVASEVARRLGLP--AANTEAIRTCRDKKRLARTLRDHGIDVPRTH--ALALRAVALDALDGLTYPVVVK 148 (887)
T ss_pred EeCchhh--HHHHHHHHHHhCcC--CCCHHHHHHhcCHHHHHHHHHHcCCCCCCEE--EeCCHHHHHHHHHhCCCCEEEE
Confidence 9764211 23445566677875 6899999999999999999999999999995 8889999999999999999999
Q ss_pred eccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCC
Q 021372 228 ATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY 287 (313)
Q Consensus 228 P~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~ 287 (313)
|..|+||+||++++|.+|+.++++.+... ...++|+||||+| .||+|+++.+..
T Consensus 149 P~~g~gS~GV~~v~~~~el~~a~~~~~~~-----~~~~~lvEEfI~G-~E~sVe~i~~~g 202 (887)
T PRK02186 149 PRMGSGSVGVRLCASVAEAAAHCAALRRA-----GTRAALVQAYVEG-DEYSVETLTVAR 202 (887)
T ss_pred eCCCCCCCCeEEECCHHHHHHHHHHHHhc-----CCCcEEEeecccC-CcEEEEEEEECC
Confidence 99999999999999999999999887542 2478999999999 999999998843
No 47
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=99.92 E-value=1.6e-23 Score=184.35 Aligned_cols=203 Identities=20% Similarity=0.311 Sum_probs=173.9
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~ 150 (313)
..|||++|+|++|..++-+++++|.+|+++|...+ ++....++..+.++ ..|.++|...++++++|.|+|-
T Consensus 12 a~kvmLLGSGELGKEvaIe~QRLG~eViAVDrY~~--APAmqVAhrs~Vi~-------MlD~~al~avv~rekPd~IVpE 82 (394)
T COG0027 12 ATKVMLLGSGELGKEVAIEAQRLGVEVIAVDRYAN--APAMQVAHRSYVID-------MLDGDALRAVVEREKPDYIVPE 82 (394)
T ss_pred CeEEEEecCCccchHHHHHHHhcCCEEEEecCcCC--Chhhhhhhheeeee-------ccCHHHHHHHHHhhCCCeeeeh
Confidence 57899999999999999999999999999955444 55577888888664 6889999999999999999985
Q ss_pred cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHH-HHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETM-KNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (313)
Q Consensus 151 ~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l-~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~ 229 (313)
.... +......+++.|+.++ |+..+...+.|+...|+++ +++|+|+.+|+ .+++.+++.+.++++|||||+||.
T Consensus 83 iEAI--~td~L~elE~~G~~VV-P~ArAt~ltMnRegiRrlAAeeLglpTs~Y~--fa~s~~e~~~a~~~iGfPcvvKPv 157 (394)
T COG0027 83 IEAI--ATDALVELEEEGYTVV-PNARATKLTMNREGIRRLAAEELGLPTSKYR--FADSLEELRAAVEKIGFPCVVKPV 157 (394)
T ss_pred hhhh--hHHHHHHHHhCCceEc-cchHHHHhhhcHHHHHHHHHHHhCCCCcccc--ccccHHHHHHHHHHcCCCeecccc
Confidence 4211 1234456789999987 9999999999999999987 57999999995 999999999999999999999999
Q ss_pred cCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCC
Q 021372 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGN 289 (313)
Q Consensus 230 ~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~ 289 (313)
-+++|+|-.+++++++++++|+.+...+ ..+...+++|+||+.+.|+++-.++.-+|.
T Consensus 158 MSSSGkGqsvv~~~e~ve~AW~~A~~g~--R~~~~RVIVE~fv~fd~EiTlLtvr~~~~~ 215 (394)
T COG0027 158 MSSSGKGQSVVRSPEDVEKAWEYAQQGG--RGGSGRVIVEEFVKFDFEITLLTVRAVDGT 215 (394)
T ss_pred cccCCCCceeecCHHHHHHHHHHHHhcC--CCCCCcEEEEEEecceEEEEEEEEEEecCC
Confidence 9999999999999999999999987543 224578999999999889998888765444
No 48
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.92 E-value=1.1e-23 Score=196.74 Aligned_cols=205 Identities=19% Similarity=0.223 Sum_probs=148.8
Q ss_pred cEEEEEcCCHh---------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcC----CHHHH--H
Q 021372 72 EKILVANRGEI---------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYL----LIPNV--L 136 (313)
Q Consensus 72 ~~ILIig~g~~---------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~----~~~~l--~ 136 (313)
.||+|+-+|.+ |..++++|.+.||+|+.++.+.+.........+..+..+.......+. ....+ .
T Consensus 2 ~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (347)
T PRK14572 2 AKIAVFFGGSSTEHSISIRTGCFICATLHTMGHSVKPILLTPDGGWVVPTVYRPSIPDESGNSEDLFLEEFQKANGVSEP 81 (347)
T ss_pred cEEEEEECCCCcchHHHHHhHHHHHHHHhhcCCEEEEEEECCCCCEeecccccccccccccccccccccccccccccccc
Confidence 46777776663 889999999999999988755431100000011111000000000000 00000 0
Q ss_pred HHHHhcCCCEEeec-cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCC------C
Q 021372 137 SAAISRGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQ------S 209 (313)
Q Consensus 137 ~~~~~~~id~vip~-~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~------~ 209 (313)
......++|+++++ +|...|+..+..+|+.+|+++.|++..++..+.||..++++|+++|||+|+++ .+. +
T Consensus 82 ~~~~~~~~d~~f~~~hg~~gEdg~iq~~le~~gipy~Gs~~~a~~i~~DK~~~k~~l~~~GI~~p~~~--~~~~~~~~~~ 159 (347)
T PRK14572 82 ADISQLDADIAFLGLHGGAGEDGRIQGFLDTLGIPYTGSGVLASALAMDKTRANQIFLQSGQKVAPFF--ELEKLKYLNS 159 (347)
T ss_pred ccccccCcCEEEEecCCCCCCCcHHHHHHHHcCcCcCCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEE--EEEccccccC
Confidence 11123468999987 57888999999999999999999999999999999999999999999999985 332 3
Q ss_pred HHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEc
Q 021372 210 TEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLAD 285 (313)
Q Consensus 210 ~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d 285 (313)
.+++.+..++++||+||||..|++|.||.++++.+||..+++.+... +..+||||||+| +|++|.++.+
T Consensus 160 ~~~~~~~~~~l~~PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~~~~------~~~vlVEefI~G-~E~sv~vi~~ 228 (347)
T PRK14572 160 PRKTLLKLESLGFPQFLKPVEGGSSVSTYKITNAEQLMTLLALIFES------DSKVMSQSFLSG-TEVSCGVLER 228 (347)
T ss_pred hHHHHHHHHhcCCCEEEecCCCCCCCCEEEECCHHHHHHHHHHHHhc------CCCEEEEcCccc-EEEEEEEEeC
Confidence 44444556678999999999999999999999999999999987543 368999999999 9999999975
No 49
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.92 E-value=5.9e-24 Score=198.22 Aligned_cols=205 Identities=20% Similarity=0.193 Sum_probs=150.7
Q ss_pred cccEEEEEcCCHh---------HHHHHHHHHHcCCcEEEEecCCCcch-hhhhhc-----C--ceEEccCCCCCCCcCCH
Q 021372 70 RQEKILVANRGEI---------AVRVIRTAHEMGIPCVAVYSTIDKDA-LHVKLA-----D--ESVCIGEAPSSQSYLLI 132 (313)
Q Consensus 70 ~~~~ILIig~g~~---------a~~v~~al~~~G~~vi~v~~~~~~~~-~~~~~a-----d--~~~~v~~~~~~~~~~~~ 132 (313)
+++||.|+-+|.+ |..++++|.+.||+|+.++.+.+..- ...... + ....+.+......+..
T Consensus 2 ~~~~i~vl~GG~S~E~evSl~s~~~v~~~l~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 80 (343)
T PRK14568 2 NRIKVGILFGGCSEEHPVSVKSAIEVARNLDTEKYEPFYIGITKSGVWKLCDGPCAEWENGSCRPAVLSPDRKVHGLLV- 80 (343)
T ss_pred CCcEEEEEECCCCCchHHHHHhHHHHHHhhcccCCeEEEEEECCCCcEEeCCccccccccccccceeeccccccccccc-
Confidence 3567888777763 88999999999999999876553100 000000 0 0000101000000000
Q ss_pred HHHHHHHHhcCCCEEeec-cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHH
Q 021372 133 PNVLSAAISRGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTE 211 (313)
Q Consensus 133 ~~l~~~~~~~~id~vip~-~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~ 211 (313)
.........++|+++|. +|...|+..+..+++..|+++.|++..++..+.||..++++|+++|||+|+++ .+.+.+
T Consensus 81 -~~~~~~~~~~~d~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~asai~~DK~~~k~~l~~~GIp~p~~~--~~~~~~ 157 (343)
T PRK14568 81 -LEQGEYETIRLDVVFPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLAYIVAKNAGIATPAFW--TVTADE 157 (343)
T ss_pred -cCccccccccCCEEEEcCCCCCCCchHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCcCcCCEE--EEECCc
Confidence 00000123569999998 68888999999999999999999999999999999999999999999999985 555444
Q ss_pred HHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCC
Q 021372 212 EAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY 287 (313)
Q Consensus 212 ~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~ 287 (313)
+.. .+.++||+||||..+++|.||.++++.+||.++++.+... +..+||||||+| +|+++.++.++.
T Consensus 158 ~~~--~~~l~~P~iVKP~~~gsS~Gv~~v~~~~eL~~a~~~a~~~------~~~vlVEe~I~G-~E~sv~vl~~~~ 224 (343)
T PRK14568 158 RPD--AATLTYPVFVKPARSGSSFGVSKVNSADELDYAIESARQY------DSKVLIEEAVVG-SEVGCAVLGNGA 224 (343)
T ss_pred hhh--hhhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc------CCcEEEECCcCC-EEEEEEEEcCCC
Confidence 332 3578999999999999999999999999999999887543 368999999999 999999998743
No 50
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=99.92 E-value=3.4e-23 Score=187.98 Aligned_cols=199 Identities=23% Similarity=0.377 Sum_probs=167.3
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~ 150 (313)
+++|.|+|+|.+|++++.+++++|+++++++++++ .+....++..+..+ |.|.+.+.+++.+ +|+|-
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~--~PA~~va~~~i~~~-------~dD~~al~ela~~--~DViT-- 67 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDAD--APAAQVADRVIVAA-------YDDPEALRELAAK--CDVIT-- 67 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCC--CchhhcccceeecC-------CCCHHHHHHHHhh--CCEEE--
Confidence 46899999999999999999999999999966555 44578888888543 6678899999855 78776
Q ss_pred cCcCccc--HHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEee
Q 021372 151 YGFLAEN--AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKA 228 (313)
Q Consensus 151 ~g~~~e~--~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP 228 (313)
+..|+ ....+.+... .+++ |+++++....||...|++|+++|+|+|+++ .+++.+++..+++++|+|.|+|.
T Consensus 68 --~EfE~V~~~aL~~l~~~-~~v~-p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~--~v~~~~el~~~~~~~g~p~VlKt 141 (375)
T COG0026 68 --YEFENVPAEALEKLAAS-VKVF-PSPDALRIAQDRLVEKQFLDKAGLPVAPFQ--VVDSAEELDAAAADLGFPAVLKT 141 (375)
T ss_pred --EeeccCCHHHHHHHHhh-cCcC-CCHHHHHHHhhHHHHHHHHHHcCCCCCCeE--EeCCHHHHHHHHHHcCCceEEEe
Confidence 44454 5556666665 6666 899999999999999999999999999995 99999999999999999999999
Q ss_pred ccCC-CCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEee
Q 021372 229 TAGG-GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGE 295 (313)
Q Consensus 229 ~~g~-gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~ 295 (313)
+.|+ .|+|.+++++.+++......... ....++|+|++..+|+||-+.++.+|++.++..
T Consensus 142 r~gGYDGkGQ~~i~~~~~~~~~~~~~~~-------~~~~vlE~fV~F~~EiSvi~aR~~~G~~~~yP~ 202 (375)
T COG0026 142 RRGGYDGKGQWRIRSDADLELRAAGLAE-------GGVPVLEEFVPFEREISVIVARSNDGEVAFYPV 202 (375)
T ss_pred ccccccCCCeEEeeCcccchhhHhhhhc-------cCceeEEeecccceEEEEEEEEcCCCCEEEecc
Confidence 9876 99999999999888875554432 134499999999999999999999999998854
No 51
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=99.91 E-value=9.9e-24 Score=182.86 Aligned_cols=128 Identities=46% Similarity=0.772 Sum_probs=116.9
Q ss_pred CHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCC
Q 021372 184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGN 263 (313)
Q Consensus 184 DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~ 263 (313)
||..++++++++|+|+|+++...+++.+++.++++++|||+++||..|+||+|++++++.++|.++++....++..+|++
T Consensus 1 Dk~~~~~~~~~~gvp~~pg~~~~~~~~eea~~~a~~iGyPVliKas~ggGG~gm~iv~~~~eL~~~~~~~~~~s~~~fg~ 80 (211)
T PF02786_consen 1 DKIRFRKLAKKLGVPVPPGSTVPISSVEEALEFAEEIGYPVLIKASAGGGGRGMRIVHNEEELEEAFERAQRESPAAFGD 80 (211)
T ss_dssp SHHHHHHHHHHTT-BBSSBESSSBSSHHHHHHHHHHH-SSEEEEETTSSTTTSEEEESSHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhcCCceEEeecccccccccccccchhhhhhhhhhccccCcccccc
Confidence 89999999999999999997434599999999999999999999999999999999999999999999999998888999
Q ss_pred CcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEEee
Q 021372 264 DGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHTEI 311 (313)
Q Consensus 264 ~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie~~ 311 (313)
.++++|+|++|.+|+.|++++|++|+++++++|+|+.||++|+.+++.
T Consensus 81 ~~v~iek~i~~~reiEvqvi~D~~gn~~~~~~~e~~~~~hs~dsi~~~ 128 (211)
T PF02786_consen 81 GPVLIEKFIEGAREIEVQVIRDGKGNVVHLGERECSEQRHSQDSIEEA 128 (211)
T ss_dssp S-EEEEE--SSEEEEEEEEEEETTSEEEEEEEEEEEEEETTEEEEEEE
T ss_pred ceEEEeeehhhhhhhhhhhhhccccceeeeeeeccccccccccceeEe
Confidence 999999999999999999999999999999999999999999998874
No 52
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.91 E-value=3e-23 Score=191.24 Aligned_cols=178 Identities=22% Similarity=0.335 Sum_probs=139.1
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHH-HHhcCCCEEeecc-CcCcccHHH
Q 021372 83 AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSA-AISRGCTMLHPGY-GFLAENAVF 160 (313)
Q Consensus 83 a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~-~~~~~id~vip~~-g~~~e~~~~ 160 (313)
+..++++|+++|+++++++.+++... . .. ...+.+... ....++|+|++.. +...++..+
T Consensus 20 ~~~i~~al~~~g~~v~~i~~~~~~~~---------~-~~--------~~~~~~~~~~~~~~~~D~v~~~~~g~~~~~~~~ 81 (315)
T TIGR01205 20 AAAVLKALRDLGYDVYPVDIDKMGSW---------T-YK--------DLPQLILELGALLEGIDVVFPVLHGRYGEDGTI 81 (315)
T ss_pred HHHHHHHHhhcCCEEEEEeecCCccc---------c-cc--------chHHHHhhccccCCCCCEEEEecCCCCCCCcHH
Confidence 78999999999999999976543211 0 00 001112111 1225699999974 455677788
Q ss_pred HHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCC-CHHHH-----HHHHHHhCCcEEEeeccCCCC
Q 021372 161 VEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQ-STEEA-----VKLADELGFPVMIKATAGGGG 234 (313)
Q Consensus 161 ~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~-~~~~~-----~~~~~~lg~P~VvKP~~g~gg 234 (313)
...++.+|++++|+++.++..+.||..++++|+++|||+|+++ .+. +.++. ..+.+.++||+|+||..|++|
T Consensus 82 ~~~le~~gip~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~--~~~~~~~~~~~~~~~~~~~~~~~P~vvKP~~~~~s 159 (315)
T TIGR01205 82 QGLLELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYI--VLTQNRASADELECEQVAEPLGFPVIVKPAREGSS 159 (315)
T ss_pred HHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEE--EEecccccchhhhHHHHHHhcCCCEEEEeCCCCCc
Confidence 8999999999999999999999999999999999999999985 444 33322 234467899999999999999
Q ss_pred ccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCC
Q 021372 235 RGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY 287 (313)
Q Consensus 235 ~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~ 287 (313)
.||.+++|.+|+.++++.+... +..+|+||||+| +|+++.++.++.
T Consensus 160 ~Gv~~v~~~~el~~~~~~~~~~------~~~~lvEe~i~G-~e~~v~vi~~~~ 205 (315)
T TIGR01205 160 VGVSKVKSEEELQAALDEAFEY------DEEVLVEQFIKG-RELEVSILGNEE 205 (315)
T ss_pred cCEEEECCHHHHHHHHHHHHhc------CCcEEEEcCCCC-EEEEEEEECCCC
Confidence 9999999999999998876542 368999999999 999999998643
No 53
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=99.90 E-value=9.2e-23 Score=191.01 Aligned_cols=213 Identities=17% Similarity=0.174 Sum_probs=153.6
Q ss_pred cccEEEEEcCCHh---------HHHHHHHH-HHcCCcEEEEecCCC-cchhhhhhcCceEEccCCCCCCCcCC------H
Q 021372 70 RQEKILVANRGEI---------AVRVIRTA-HEMGIPCVAVYSTID-KDALHVKLADESVCIGEAPSSQSYLL------I 132 (313)
Q Consensus 70 ~~~~ILIig~g~~---------a~~v~~al-~~~G~~vi~v~~~~~-~~~~~~~~ad~~~~v~~~~~~~~~~~------~ 132 (313)
|+++|.|+-+|.+ |..++++| .+.+|+|+.++-+.+ .... ..+.....+.......... .
T Consensus 1 ~~~~v~vl~GG~S~EhevSl~Sa~~v~~~l~~~~~~~v~~i~i~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (364)
T PRK14570 1 MKKNLMLIFGGVSFEHEISLRSAYGIYSALLKLDKYNIYSVFIDKCTGIWY---LLDSVPDPPKLIKRDVLPIVSLIPGC 77 (364)
T ss_pred CCcEEEEEECCCCcchhhhHHhHHHHHHHhccccCceEEEEEEecCCCeEE---ecCccccccccccccccccccccccc
Confidence 4668888887774 88999999 678999998876543 1000 0000000000000000000 0
Q ss_pred HHHHHHHHhcCCCEEeec-cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccC----
Q 021372 133 PNVLSAAISRGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLL---- 207 (313)
Q Consensus 133 ~~l~~~~~~~~id~vip~-~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~---- 207 (313)
..+.. ....++|+|+|. +|...|+..+..+|+.+|+|+.|++..++..+.||..++++|+++|||+|+++ .+
T Consensus 78 ~~~~~-~~~~~~D~vf~~lhG~~GEdg~iqglle~~giPy~Gs~~~asal~~DK~~tK~~l~~~GIpt~p~~--~~~~~~ 154 (364)
T PRK14570 78 GIFVN-NKNLEIDVVFPIVHGRTGEDGAIQGFLKVMDIPCVGAGILGSAISINKYFCKLLLKSFNIPLVPFI--GFRKYD 154 (364)
T ss_pred ccccc-CcCcCCCEEEEcCCCCCCCcCHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHcCCCCCCEE--EEeccc
Confidence 00110 122469999997 57888999999999999999999999999999999999999999999999974 22
Q ss_pred --CCHHHHHHH-HHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEE
Q 021372 208 --QSTEEAVKL-ADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLA 284 (313)
Q Consensus 208 --~~~~~~~~~-~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~ 284 (313)
.+.+++.+. ...+|||+||||..+++|.||.++++.+|+..+++.+... ++.+||||||+| +|++|.+++
T Consensus 155 ~~~~~~~~~~~~~~~lg~PviVKP~~~GsS~Gv~~v~~~~el~~al~~a~~~------~~~vlVEefI~G-rEi~v~Vlg 227 (364)
T PRK14570 155 YFLDKEGIKKDIKEVLGYPVIVKPAVLGSSIGINVAYNENQIEKCIEEAFKY------DLTVVIEKFIEA-REIECSVIG 227 (364)
T ss_pred cccchHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhC------CCCEEEECCcCC-EEEEEEEEC
Confidence 234454433 4578999999999999999999999999999999987643 367999999999 999999998
Q ss_pred cCCCCEEEEee
Q 021372 285 DKYGNVVHFGE 295 (313)
Q Consensus 285 d~~G~vv~~~~ 295 (313)
+....+...++
T Consensus 228 ~~~~~v~~~~E 238 (364)
T PRK14570 228 NEQIKIFTPGE 238 (364)
T ss_pred CCCceEeeeEE
Confidence 75444444443
No 54
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=99.89 E-value=1.5e-21 Score=179.67 Aligned_cols=206 Identities=21% Similarity=0.273 Sum_probs=164.9
Q ss_pred cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeecc
Q 021372 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (313)
Q Consensus 72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~ 151 (313)
+||||+|+|..-..++.++.+.+....++....++-... .+....+. .+ .+.+.|++++++.++|+++++.
T Consensus 1 mkVLviGsGgREHAiA~~la~s~~v~~~~~apgN~G~a~---~~~~~~~~-----~~-~~~~~lv~fA~~~~idl~vVGP 71 (428)
T COG0151 1 MKVLVIGSGGREHALAWKLAQSPLVLYVYVAPGNPGTAL---EAYLVNIE-----ID-TDHEALVAFAKEKNVDLVVVGP 71 (428)
T ss_pred CeEEEEcCCchHHHHHHHHhcCCceeEEEEeCCCCccch---hhhhccCc-----cc-cCHHHHHHHHHHcCCCEEEECC
Confidence 589999999887888899988775554444344433211 12222111 11 4588999999999999999886
Q ss_pred CcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccC
Q 021372 152 GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAG 231 (313)
Q Consensus 152 g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g 231 (313)
... -..-+.+.|++.||+++||+.++..+-.+|..+|++|+++|||++.+ ..+++.+++.+++++.|.|+||||..-
T Consensus 72 E~p-L~~GvvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IPta~y--~~f~~~e~a~ayi~~~g~piVVKadGL 148 (428)
T COG0151 72 EAP-LVAGVVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPTAEY--EVFTDPEEAKAYIDEKGAPIVVKADGL 148 (428)
T ss_pred cHH-HhhhhHHHHHHCCCceeCcCHHHHHHHhhHHHHHHHHHHcCCCcccc--cccCCHHHHHHHHHHcCCCEEEecccc
Confidence 211 01356788999999999999999999999999999999999999988 588899999999999999999999999
Q ss_pred CCCccEEEeCCHHHHHHHHHHHHHHHHhcCC--CCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372 232 GGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 293 (313)
Q Consensus 232 ~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~--~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~ 293 (313)
.+|+||.++.+.+|..++++.+.... .|+ ...++||||++| .|+|+.++.|++ +++.+
T Consensus 149 aaGKGV~V~~~~eeA~~a~~~~l~~~--~fg~~g~~VVIEEfL~G-eE~S~~a~~DG~-~v~p~ 208 (428)
T COG0151 149 AAGKGVIVAMTLEEAEAAVDEMLEGN--AFGSAGARVVIEEFLDG-EEFSLQAFVDGK-TVIPM 208 (428)
T ss_pred cCCCCeEEcCCHHHHHHHHHHHHhhc--cccCCCCcEEEEecccc-eEEEEEEEEcCC-eEEEC
Confidence 99999999999999999999887642 232 246999999999 999999999975 55444
No 55
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.89 E-value=6.5e-22 Score=181.24 Aligned_cols=173 Identities=17% Similarity=0.261 Sum_probs=138.1
Q ss_pred EEEEEcCCHh---------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcC
Q 021372 73 KILVANRGEI---------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRG 143 (313)
Q Consensus 73 ~ILIig~g~~---------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~ 143 (313)
||.|+-+|.+ +..++++|++.|+++.+++.+.+. + ..+ .+..+
T Consensus 2 ~v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~~i~~~~~~-------------~------------~~~---~~~~~ 53 (299)
T PRK14571 2 RVALLMGGVSREREISLRSGERVKKALEKLGYEVTVFDVDEDF-------------L------------KKV---DQLKS 53 (299)
T ss_pred eEEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEEEEccCchH-------------H------------HHh---hhccC
Confidence 4666655553 789999999999999998643210 0 011 11245
Q ss_pred CCEEeecc-CcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCC
Q 021372 144 CTMLHPGY-GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGF 222 (313)
Q Consensus 144 id~vip~~-g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~ 222 (313)
+|+|++.. |...++..+...++.+|++++|+++.++..+.||..++++|+ .|||+|+++ .+.+.. ....++|
T Consensus 54 ~D~v~~~~~g~~ge~~~~~~~le~~gip~~G~~~~a~~i~~DK~~~k~~l~-~~ip~p~~~--~~~~~~----~~~~l~~ 126 (299)
T PRK14571 54 FDVVFNVLHGTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKLLTYRFLK-GTVEIPDFV--EIKEFM----KTSPLGY 126 (299)
T ss_pred CCEEEEeCCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHh-cCCCCCCEE--EEechh----hhhhcCC
Confidence 89999874 555678888999999999999999999999999999999998 589999985 444322 2356899
Q ss_pred cEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCC
Q 021372 223 PVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY 287 (313)
Q Consensus 223 P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~ 287 (313)
|+|+||..|++|.||.+++|.+|+.++++..... ...+||||||+| +|+++.+++++.
T Consensus 127 P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~------~~~vlVEeyI~G-~E~sv~vl~~~~ 184 (299)
T PRK14571 127 PCVVKPRREGSSIGVFICESDEEFQHALKEDLPR------YGSVIVQEYIPG-REMTVSILETEK 184 (299)
T ss_pred CEEEecCCCCCcCCEEEECCHHHHHHHHHHHHhh------CCcEEEEccccc-eEEEEEEEcCCC
Confidence 9999999999999999999999999988776532 368999999999 999999999854
No 56
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.89 E-value=5.6e-22 Score=187.20 Aligned_cols=151 Identities=16% Similarity=0.253 Sum_probs=132.7
Q ss_pred cCCHHHHHHHHHhcCCCEEeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCC
Q 021372 129 YLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQ 208 (313)
Q Consensus 129 ~~~~~~l~~~~~~~~id~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~ 208 (313)
+.+.+.++++|+++++|+|+++.+.. -...+.+.+++.|++++|++.+++.++.||..++++|+++|||+|+++ .+.
T Consensus 13 ~~d~~~l~~~~~~~~id~vi~g~E~~-l~~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~gIptp~~~--~~~ 89 (379)
T PRK13790 13 ESDHQAILDFAKQQNVDWVVIGPEQP-LIDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYK--EVE 89 (379)
T ss_pred CCCHHHHHHHHHHhCCCEEEECCcHH-HHHHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCEE--EEC
Confidence 56789999999999999999876321 113567888999999999999999999999999999999999999985 788
Q ss_pred CHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCC
Q 021372 209 STEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY 287 (313)
Q Consensus 209 ~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~ 287 (313)
+.+++.+++++++||+||||..+++|+||++++|.+|+.++++.+.... .++.+||||||+| .|+++.++.+++
T Consensus 90 ~~~ea~~~~~~~g~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~~~~~----~~~~vlvEe~i~G-~E~sv~~~~~g~ 163 (379)
T PRK13790 90 RKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDE----EEGTVVFETFLEG-EEFSLMTFVNGD 163 (379)
T ss_pred CHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcC----CCCeEEEEEcccC-ceEEEEEEeeCC
Confidence 9999999999999999999999999999999999999999999875321 2358999999999 999999999854
No 57
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.87 E-value=5.6e-21 Score=196.42 Aligned_cols=207 Identities=16% Similarity=0.182 Sum_probs=154.4
Q ss_pred ccccEEEEEcCCHh---------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHH
Q 021372 69 CRQEKILVANRGEI---------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA 139 (313)
Q Consensus 69 ~~~~~ILIig~g~~---------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~ 139 (313)
|++++|.|+-+|.+ |..++++|.+.||+|+.++.+.+... ..................+ . ..+.+
T Consensus 449 ~~~~~i~vl~GG~S~E~~vSl~s~~~v~~al~~~~~~v~~~~i~~~g~~--~~~~~~~~~~~~~~~~~~~-~-~~~~~-- 522 (809)
T PRK14573 449 PKKLSLGLVCGGKSCEHDISLLSAKNIAKYLSPEFYDVSYFLINRQGLW--ETVSSLETAIEEDSGKSVL-S-SEIAQ-- 522 (809)
T ss_pred CCCcEEEEEECCCCCchHHHHHhHHHHHHhhcccCcEEEEEEECCCCeE--Eeccccccccccccccccc-c-hhhhh--
Confidence 34667888877764 88999999999999999876543211 0000000000000000111 0 11111
Q ss_pred HhcCCCEEeec-cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCC------HH-
Q 021372 140 ISRGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQS------TE- 211 (313)
Q Consensus 140 ~~~~id~vip~-~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~------~~- 211 (313)
...++|+|+|. +|...|+..+..+|+.+|+++.|++..+...+.||..+|++++++|||+|++. .+.. .+
T Consensus 523 ~~~~~d~vf~~lhG~~gedg~iq~~le~~gipy~Gs~~~asal~~DK~~~K~~l~~~GIpt~~~~--~~~~~~~~~~~~~ 600 (809)
T PRK14573 523 ALAKVDVVLPILHGPFGEDGTMQGFLEIIGKPYTGPSLAFSAIAMDKVLTKRFASDVGVPVVPYQ--PLTLAGWKREPEL 600 (809)
T ss_pred ccccCCEEEEcCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEE--EEechhcccChHH
Confidence 11469999998 57888999999999999999999999999999999999999999999999985 3331 22
Q ss_pred HHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCC
Q 021372 212 EAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGN 289 (313)
Q Consensus 212 ~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~ 289 (313)
.+.+..++++||+||||..+++|.||.++++.+|+.++++.+... +.++||||||.|++|++|.++++..+.
T Consensus 601 ~~~~~~~~lg~P~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a~~~------~~~vlVEe~i~~grEi~v~vl~~~~~~ 672 (809)
T PRK14573 601 CLAHIVEAFSFPMFVKTAHLGSSIGVFEVHNVEELRDKISEAFLY------DTDVFVEESRLGSREIEVSCLGDGSSA 672 (809)
T ss_pred HHHHHHHhcCCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhc------CCcEEEEeccCCCEEEEEEEEeCCCCc
Confidence 234566789999999999999999999999999999999987642 478999999887799999999987653
No 58
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=99.86 E-value=8.4e-20 Score=169.44 Aligned_cols=210 Identities=17% Similarity=0.225 Sum_probs=149.4
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC-cchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID-KDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~-~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip 149 (313)
..+|..+|+. +++.+++.|++.|++++++..... .....+.++|+++.++.. .+..+.+...++.+ . +.++.
T Consensus 18 ~~~i~~~~sh-saL~I~~gAkeeGf~ti~v~~~~~~~~y~~~~~~De~i~v~~~---~di~~~~~~~~l~~-~--~~iiI 90 (358)
T PRK13278 18 NITIATIGSH-SSLQILKGAKKEGFRTIAICKKKREVFYKRFPVADEFIIVDDF---SDILNEAVQEKLRE-M--NAILI 90 (358)
T ss_pred cceEEEEecc-cHHHHHHHHHHCCCeEEEEEeCCCccccccccccceEEEEcch---hhhcCHHHHHHHhh-c--CcEEE
Confidence 3478888865 589999999999999999876543 234456677888866411 11122233333333 3 55333
Q ss_pred ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (313)
Q Consensus 150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~ 229 (313)
.+|....... .+.+...+++++| +.+++....||..++++|+++|||+|+++ .+.+ +++||+|+||.
T Consensus 91 p~gs~v~y~~-~d~l~~~~~p~~g-n~~~l~~e~dK~~~k~~L~~aGIp~p~~~----~~~~-------~i~~PvIVKp~ 157 (358)
T PRK13278 91 PHGSFVAYLG-LENVEKFKVPMFG-NREILRWEADRDKERKLLEEAGIRIPRKY----ESPE-------DIDRPVIVKLP 157 (358)
T ss_pred eCCCcceeec-HHHHHHCCCCcCC-CHHHHHHhcCHHHHHHHHHHcCCCCCCEe----CCHH-------HcCCCEEEEeC
Confidence 3344444333 3333468888874 88999999999999999999999999863 3433 35799999999
Q ss_pred cCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcC-CCCEEEEeeccchhhccccee
Q 021372 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADK-YGNVVHFGERDCSIQVIEIHT 307 (313)
Q Consensus 230 ~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~-~G~vv~~~~r~~s~~r~~~~~ 307 (313)
.|.||+|++++++.+|+.++++.+.+...-. ....+++||||.| .||+++++... +|++-.+ ++.||++..
T Consensus 158 ~g~ggkGv~i~~s~~El~~~~~~l~~~~~~~-~~~~~iIEEfI~G-~e~sv~~f~s~~~~~~e~l-----~id~r~~~~ 229 (358)
T PRK13278 158 GAKGGRGYFIAKSPEEFKEKIDKLIERGLIT-EVEEAIIQEYVVG-VPYYFHYFYSPIKNRLELL-----GIDRRYESN 229 (358)
T ss_pred CCCCCCCeEEeCCHHHHHHHHHHHHhccccC-CCCeEEEEecCCC-cEEEEEEEEeccCCeEEEE-----eeceeeeec
Confidence 9999999999999999999998875422111 1478999999999 99999999874 5675544 455555543
No 59
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.84 E-value=2e-19 Score=164.90 Aligned_cols=193 Identities=18% Similarity=0.172 Sum_probs=140.5
Q ss_pred EEEEEcCC---HhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372 73 KILVANRG---EIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (313)
Q Consensus 73 ~ILIig~g---~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip 149 (313)
|++|+++. .++..++++|+++|+++..++.......... ..+..+ . .. ....++|++++
T Consensus 2 ~~~i~~~~~s~~s~~~~~~a~~~~g~~v~~i~~~~~~~~~~~-~~~~~~-~---------~~-------~~~~~~d~v~~ 63 (300)
T PRK10446 2 KIAILSRDGTLYSCKRLREAAIQRGHLVEILDPLSCYMNINP-AASSIH-Y---------KG-------RKLPHFDAVIP 63 (300)
T ss_pred eEEEEecCCcchhHHHHHHHHHHcCCeEEEEehHHceEecCC-CcccEE-E---------CC-------cccCCCCEEEE
Confidence 57777733 4588999999999999999964321111000 011111 1 00 01236899998
Q ss_pred ccCcC-ccc-HHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHh-CCcEEE
Q 021372 150 GYGFL-AEN-AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL-GFPVMI 226 (313)
Q Consensus 150 ~~g~~-~e~-~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~l-g~P~Vv 226 (313)
..+.. ... ......++..|. +.++++.++..+.||..++++|+++|||+|++. .+.+.+++.++++++ +||+|+
T Consensus 64 ~~~~~~~~~~~~~~~~le~~g~-~v~n~~~a~~~~~dK~~~~~~l~~~gip~P~t~--~~~~~~~~~~~~~~~~~~P~Vv 140 (300)
T PRK10446 64 RIGTAITFYGTAALRQFEMLGS-YPLNESVAIARARDKLRSMQLLARQGIDLPVTG--IAHSPDDTSDLIDMVGGAPLVV 140 (300)
T ss_pred cCCCchhhHHHHHHHHHHHCCC-ceecCHHHHHhhhcHHHHHHHHHHcCCCCCCEE--EeCCHHHHHHHHHHhCCCCEEE
Confidence 64321 111 234667888895 456899999999999999999999999999985 667888888888877 799999
Q ss_pred eeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccC---CCcEEEEEEEEcCCCCEEEEeec
Q 021372 227 KATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQ---NPRHIEFQVLADKYGNVVHFGER 296 (313)
Q Consensus 227 KP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~---G~~e~~v~v~~d~~G~vv~~~~r 296 (313)
||..|++|+||+++++.+++..+++.+... +..+|+||||+ | .|+++.++.+ +++...+|
T Consensus 141 KP~~g~~g~GV~~v~~~~~~~~~~~~~~~~------~~~~lvQe~I~~~~g-~d~rv~vig~---~~~~~~~r 203 (300)
T PRK10446 141 KLVEGTQGIGVVLAETRQAAESVIDAFRGL------NAHILVQEYIKEAQG-CDIRCLVVGD---EVVAAIER 203 (300)
T ss_pred EECCCCCcccEEEEcCHHHHHHHHHHHHhc------CCCEEEEeeeccCCC-ceEEEEEECC---EEEEEEEE
Confidence 999999999999999999998888765432 36799999994 6 9999998853 56655554
No 60
>PRK06524 biotin carboxylase-like protein; Validated
Probab=99.83 E-value=1.2e-19 Score=172.86 Aligned_cols=147 Identities=20% Similarity=0.280 Sum_probs=122.5
Q ss_pred HHHHHHhcCCCEEeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHH
Q 021372 135 VLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAV 214 (313)
Q Consensus 135 l~~~~~~~~id~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~ 214 (313)
+++.++.++....+. +++++..+..+++..|+++.+|+.+++..+.||..++++++++|||+|+++.....+.+++.
T Consensus 96 ~~~~~~~~~~~~~~~---fl~~DG~iQ~lLE~lGIpy~gP~a~asai~mDK~~tK~l~~~aGIPtpp~~~~~~~~~eel~ 172 (493)
T PRK06524 96 TLEFIKRRGPGGKAC---FVMFDEETEALARQAGLEVMHPPAELRHRLDSKIVTTRLANEAGVPSVPHVLGRVDSYDELS 172 (493)
T ss_pred HHHHHHhhCCCCceE---EecCCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHcCCCCCCcccccCCCHHHHH
Confidence 344555554422211 67799999999999999999999999999999999999999999999999622256777776
Q ss_pred HHHHH--hCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEE
Q 021372 215 KLADE--LGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVH 292 (313)
Q Consensus 215 ~~~~~--lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~ 292 (313)
+.++. +|||+||||..|++|+|+.+|++.+|+..+++.+. ....++||+||+| +|++|+++.+.+|.++.
T Consensus 173 ~~~~~~~IGyPvVVKP~~GGSS~GV~~Vkn~eELe~a~~~~~-------~~~~viVEe~I~G-rEitVev~vd~dG~Vv~ 244 (493)
T PRK06524 173 ALAHGAGLGDDLVVQTPYGDSGSTTFFVRGQRDWDKYAGGIV-------GQPEIKVMKRIRN-VEVCIEACVTRHGTVIG 244 (493)
T ss_pred HHHHhccCCCcEEEEECCCCCCcCEEEeCCHHHHHHHHHHhc-------CCCCEEEEeccCc-EEEEEEEEEeCCCCEEe
Confidence 66665 99999999999999999999999999999887653 2367999999999 99999999998887754
No 61
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.81 E-value=1.3e-18 Score=157.08 Aligned_cols=189 Identities=23% Similarity=0.276 Sum_probs=137.2
Q ss_pred EEEEc--CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeecc
Q 021372 74 ILVAN--RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (313)
Q Consensus 74 ILIig--~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~ 151 (313)
|.|+. .+.....++++++++|+++.+++.+... +.+.. ... ....+|++++..
T Consensus 2 ~~~~~~~~~~~~~~l~~a~~~~g~~~~~~~~~~~~-----------~~~~~-----~~~---------~~~~~d~v~~r~ 56 (277)
T TIGR00768 2 LAILYDRIRLDEKMLKEAAEELGIDYKVVTPPAIP-----------LTFNE-----GPR---------ELAELDVVIVRI 56 (277)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCceEEEEhHHcE-----------EeccC-----CCc---------cCCCCCEEEEec
Confidence 44554 3446788999999999999998532111 11100 000 013478877654
Q ss_pred CcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccC
Q 021372 152 GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAG 231 (313)
Q Consensus 152 g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g 231 (313)
........+.+.++..|++++ ++++++..+.||..++++|+++|+|+|+++ .+.+.+++.++.++++||+|+||..|
T Consensus 57 ~~~~~~~~~~~~l~~~g~~~~-~~~~~~~~~~dK~~~~~~l~~~gi~~P~t~--~~~~~~~~~~~~~~~~~p~vvKP~~g 133 (277)
T TIGR00768 57 VSMFRGLAVARYLESLGVPVI-NSSDAILNAGDKFLTSQLLAKAGLPQPRTG--LAGSPEEALKLIEEIGFPVVLKPVFG 133 (277)
T ss_pred hhHhhHHHHHHHHHHCCCeee-CCHHHHHHHhhHHHHHHHHHHCCCCCCCEE--EeCCHHHHHHHHHhcCCCEEEEECcC
Confidence 111123466778888999988 578999999999999999999999999995 78889999999999999999999999
Q ss_pred CCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCC--cEEEEEEEEcCCCCEEEEeec
Q 021372 232 GGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNP--RHIEFQVLADKYGNVVHFGER 296 (313)
Q Consensus 232 ~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~--~e~~v~v~~d~~G~vv~~~~r 296 (313)
++|+||+++++.+++..+++.+.... .....+++||||+|. .++++.++ +|+++....|
T Consensus 134 ~~g~gv~~i~~~~~l~~~~~~~~~~~---~~~~~~lvQe~I~~~~~~~~rv~v~---~~~~~~~~~r 194 (277)
T TIGR00768 134 SWGRLVSLARDKQAAETLLEHFEQLN---GPQNLFYVQEYIKKPGGRDIRVFVV---GDEVIAAIYR 194 (277)
T ss_pred CCCCceEEEcCHHHHHHHHHHHHHhc---ccCCcEEEEeeecCCCCceEEEEEE---CCEEEEEEEE
Confidence 99999999999999998877654321 012479999999973 35555443 3466655444
No 62
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=99.80 E-value=4.1e-19 Score=138.00 Aligned_cols=110 Identities=50% Similarity=0.822 Sum_probs=102.4
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip 149 (313)
|.+||||+|+|+++.+++++++++|+++++++++++..+.+...+|+.+.+++.+..++|.+.+.++++++++++|+++|
T Consensus 1 ~ikkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i~p 80 (110)
T PF00289_consen 1 MIKKVLIANRGEIAVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIARKEGADAIHP 80 (110)
T ss_dssp SSSEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTESEEES
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCcceeccCchhcccccccccccceecCcchhhhhhccHHHHhhHhhhhcCccccc
Confidence 57899999999999999999999999999999999999999999999998887788889999999999999999999999
Q ss_pred ccCcCcccHHHHHHHHHcCCceeCCCHHHH
Q 021372 150 GYGFLAENAVFVEMCREHGINFIGPNPDSI 179 (313)
Q Consensus 150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i 179 (313)
+|++++|+..+++.+++.|+.++||+++++
T Consensus 81 Gyg~lse~~~fa~~~~~~gi~fiGp~~~~i 110 (110)
T PF00289_consen 81 GYGFLSENAEFAEACEDAGIIFIGPSPEAI 110 (110)
T ss_dssp TSSTTTTHHHHHHHHHHTT-EESSS-HHHH
T ss_pred ccchhHHHHHHHHHHHHCCCEEECcChHhC
Confidence 999999999999999999999999999875
No 63
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=99.79 E-value=9e-18 Score=153.97 Aligned_cols=212 Identities=17% Similarity=0.159 Sum_probs=150.1
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhh---hhcCceEEccCCCCCCCcCCH--HHHHHHHHhcCCC
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV---KLADESVCIGEAPSSQSYLLI--PNVLSAAISRGCT 145 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~---~~ad~~~~v~~~~~~~~~~~~--~~l~~~~~~~~id 145 (313)
..+|..+|+. +++++++-|++.|++++++...... .++. .++|+.+.++ +|.++ +.+.+..++ -+
T Consensus 17 ~~~i~t~~SH-sal~i~~gAk~egf~t~~v~~~~r~-~~Y~~f~~~~d~~i~~~------~f~~~~~~~~~~~l~~--~n 86 (366)
T PRK13277 17 KVKIGVLASH-SALDVFDGAKDEGFRTIAVCQKGRE-RTYREFKGIVDEVIVLD------KFKDILSEKVQDELRE--EN 86 (366)
T ss_pred ccEEEEEecc-hHHHHhccHHhcCCcEEEEEcCCCc-chhhhhccccceEEEec------chhhhhhHHHHHHHHH--CC
Confidence 4578888876 5899999999999999998754432 2222 3578888764 23321 345554443 45
Q ss_pred EEeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHh--CCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCc
Q 021372 146 MLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIM--GDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFP 223 (313)
Q Consensus 146 ~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~--~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P 223 (313)
+|+..++++.+..-.-....+..+|++| +...++.- +||..++++|+++||++|+++ .++ +++.+|
T Consensus 87 ~i~iPh~sf~~y~g~~~ie~~~~vp~fG-nr~~lrwE~~~dKk~~yk~L~~aGI~~Pk~~----~~p-------~eId~P 154 (366)
T PRK13277 87 AIFVPNRSFAVYVGYDAIENEFKVPIFG-NRYLLRWEERTGEKNYYWLLEKAGIPYPKLF----KDP-------EEIDRP 154 (366)
T ss_pred eEEecCCCeEEEecHHHHhhcCCCCccc-CHHHhhhhhccCHHHHHHHHHHcCCCCceee----cCc-------cccCcc
Confidence 6666667666654443333368899997 56666555 899999999999999999986 122 357899
Q ss_pred EEEeeccCCC--CccEEEeCCHHHHHHHHHHHHHHHHh-cCCCCcEEEeeccCCCcEEEEEEEEcC-CCCEEEEeeccch
Q 021372 224 VMIKATAGGG--GRGMRLAKEPDEFVKLLQQAKSEAAA-AFGNDGVYLEKYVQNPRHIEFQVLADK-YGNVVHFGERDCS 299 (313)
Q Consensus 224 ~VvKP~~g~g--g~GV~~v~~~~el~~~~~~~~~~~~~-~~~~~~vlvEe~I~G~~e~~v~v~~d~-~G~vv~~~~r~~s 299 (313)
+||||..+.| |+|+++++|.+|+....+.+.....- .-+..++++||||.| .+|+++++.+. +|++..+ +
T Consensus 155 VIVKp~~asG~~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iIQEyI~G-~ey~~d~F~s~l~g~ve~l-----~ 228 (366)
T PRK13277 155 VIVKLPEAKRRLERGFFTASSYEDFYEKSEELIKAGVIDREDLKNARIEEYVIG-AHFNFNYFYSPIRDRLELL-----G 228 (366)
T ss_pred EEEEECCCCCccccCeEeeCCHHHHHHHHHhhhhcCcccccccccceeEeccCC-CEEEEEEEEeccCCcEEEE-----E
Confidence 9999999999 99999999999998887765431100 001245679999999 99999999995 7776655 4
Q ss_pred hhcccceeEEe
Q 021372 300 IQVIEIHTHTE 310 (313)
Q Consensus 300 ~~r~~~~~ie~ 310 (313)
+.+|.+..+|.
T Consensus 229 id~R~esn~dg 239 (366)
T PRK13277 229 IDRRIQSNLDG 239 (366)
T ss_pred Eeecccccccc
Confidence 55554444443
No 64
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.78 E-value=2.4e-17 Score=149.37 Aligned_cols=174 Identities=24% Similarity=0.331 Sum_probs=128.1
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccCcCcccHHHH
Q 021372 82 IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFV 161 (313)
Q Consensus 82 ~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g~~~e~~~~~ 161 (313)
-...++++++++|+++..++.+... +.+.. + .. .-.++|++++............
T Consensus 11 ~~~~l~~al~~~g~~~~~~~~~~~~-----------~~~~~-~----~~---------~~~~~d~v~~r~~~~~~~~~~~ 65 (280)
T TIGR02144 11 DEKMLIEELEKLGLPYRKIYVPALP-----------LPFGE-R----PK---------ELEDVDVAIIRCVSQSRALYSA 65 (280)
T ss_pred HHHHHHHHHHHcCCceEEEEhhheE-----------EEcCC-C----cc---------ccCCCCEEEEcCcchhhHHHHH
Confidence 3577899999999999998543211 11110 0 00 0124788887521111223456
Q ss_pred HHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeC
Q 021372 162 EMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAK 241 (313)
Q Consensus 162 ~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~ 241 (313)
..++..|++++ ++++++..+.||..++++|+++|||+|+++ .+.+.+++.++.+.++||+|+||..|++|+||.+++
T Consensus 66 ~~le~~g~~~~-n~~~~~~~~~dK~~~~~~l~~~gip~P~t~--~~~~~~~~~~~~~~~~~P~vvKP~~g~~g~gv~~v~ 142 (280)
T TIGR02144 66 RLLEALGVPVI-NSSHVIEACGDKIFTYLKLAKAGVPTPRTY--LAFDREAALKLAEALGYPVVLKPVIGSWGRLVALIR 142 (280)
T ss_pred HHHHHCCCcEE-CcHHHHHHHhhHHHHHHHHHHCCcCCCCeE--eeCCHHHHHHHHHHcCCCEEEEECcCCCcCCEEEEC
Confidence 77788999998 578999999999999999999999999995 677888888888899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCC-CcEEEEEEEEc
Q 021372 242 EPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN-PRHIEFQVLAD 285 (313)
Q Consensus 242 ~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G-~~e~~v~v~~d 285 (313)
+.+++.++++...... ...+..+|+||||+| +.++++.++.+
T Consensus 143 ~~~~l~~~~~~~~~~~--~~~~~~~ivQefI~~~~~d~~v~vig~ 185 (280)
T TIGR02144 143 DKDELESLLEHKEVLG--GSQHKLFYIQEYINKPGRDIRVFVIGD 185 (280)
T ss_pred CHHHHHHHHHHHHhhc--CCcCCeEEEEcccCCCCCceEEEEECC
Confidence 9999988775422110 012357999999986 47888877643
No 65
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.78 E-value=1.4e-17 Score=168.59 Aligned_cols=192 Identities=23% Similarity=0.397 Sum_probs=147.5
Q ss_pred ccEEEEEcCCHh--------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhc
Q 021372 71 QEKILVANRGEI--------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISR 142 (313)
Q Consensus 71 ~~~ILIig~g~~--------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~ 142 (313)
..+|++--..+. ++.++.++-+-. .+ +.+....+.+..++.+.++| ....|+++++++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~lgp--------st~~I~~~A~~~ 172 (727)
T PRK14016 107 VYQVVFEYKEEEVGREALELAVDLVNAAINDT----PF--DLEAALARLRELDEDERLGP--------STAAIVDAAEAR 172 (727)
T ss_pred EEEEEEEeCCHHHHHHHHHHHHHHHHHHhhCC----Cc--CHHHHHHHHHHHHHhcccCC--------CHHHHHHHHHHc
Confidence 466777665542 334444443211 11 34445556666777777763 256999999999
Q ss_pred CCCE--------EeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHH
Q 021372 143 GCTM--------LHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAV 214 (313)
Q Consensus 143 ~id~--------vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~ 214 (313)
++++ +.++||+..+ .+...+.. +++..++..+.||..++++|+++|||+|+++ .+.+.+++.
T Consensus 173 gi~~~~l~~~~~v~lgyG~~~~------~i~~~~~~--~~s~~a~~i~~DK~~tk~lL~~~GIPvP~~~--~v~s~~~a~ 242 (727)
T PRK14016 173 GIPYIRLGDGSLVQLGYGKYQR------RIQAAETD--QTSAIAVDIACDKELTKRLLAAAGVPVPEGR--VVTSAEDAW 242 (727)
T ss_pred CCCEEEeCCCCeEecCCcHHHH------HHHHhcCC--CCcHHHHHHhCCHHHHHHHHHHCCcCCCCee--EeCCHHHHH
Confidence 9988 7777775443 33333443 5789999999999999999999999999995 889999999
Q ss_pred HHHHHhCCcEEEeeccCCCCccEEE-eCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372 215 KLADELGFPVMIKATAGGGGRGMRL-AKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 293 (313)
Q Consensus 215 ~~~~~lg~P~VvKP~~g~gg~GV~~-v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~ 293 (313)
++++++|||+|+||..|++|+||.+ +++.+|+.++++.+... ...+|||+||+| +|+++.++ +|+++..
T Consensus 243 ~~a~~iG~PvVVKP~~G~~G~GV~~~v~~~~el~~a~~~a~~~------~~~viVEe~I~G-~d~Rv~Vv---gg~vvaa 312 (727)
T PRK14016 243 EAAEEIGYPVVVKPLDGNHGRGVTVNITTREEIEAAYAVASKE------SSDVIVERYIPG-KDHRLLVV---GGKLVAA 312 (727)
T ss_pred HHHHHcCCCEEEEECCCCCCCceEEecCCHHHHHHHHHHHHHh------CCeEEEEEecCC-ceEEEEEE---CCEEEEE
Confidence 9999999999999999999999998 99999999999987654 278999999999 99998776 3477777
Q ss_pred eec
Q 021372 294 GER 296 (313)
Q Consensus 294 ~~r 296 (313)
..|
T Consensus 313 ~~r 315 (727)
T PRK14016 313 ARR 315 (727)
T ss_pred EEe
Confidence 655
No 66
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.77 E-value=6.6e-18 Score=165.98 Aligned_cols=161 Identities=24% Similarity=0.389 Sum_probs=122.8
Q ss_pred CceEEccCCCCCCCcCCH--HHHHHHHHhcCCCEEeeccCcCcccHHH-------HHHHHHcCCceeCCCHHHHHHhCCH
Q 021372 115 DESVCIGEAPSSQSYLLI--PNVLSAAISRGCTMLHPGYGFLAENAVF-------VEMCREHGINFIGPNPDSIRIMGDK 185 (313)
Q Consensus 115 d~~~~v~~~~~~~~~~~~--~~l~~~~~~~~id~vip~~g~~~e~~~~-------~~~l~~~gi~~~g~~~~~i~~~~DK 185 (313)
|+.+.++|.+..+ .++ +.|++.+++.++++++... |...+ ...+. ..+..+ +++.++..+.||
T Consensus 227 ~~~~~~g~~~~~~--l~~y~~~Ii~~a~~~Gi~~~~~~s----e~~~~~L~~g~~~~~~~-~s~~~~-~s~~ai~~~~DK 298 (547)
T TIGR03103 227 NERLFSGPAPEAD--LNPYARIIVDEARRRGIEVEVLDA----EGGLFRLSLGGRSIRCR-ESLSEL-TSAVAMSLCDDK 298 (547)
T ss_pred CcccccCCCcccc--cCHHHHHHHHHHHHcCCcEEEECC----CCCEEEecCCceEEEEE-eccCCC-CCHHHHHHhcCH
Confidence 5556676554433 444 8999999999999998542 22111 00011 111112 688999999999
Q ss_pred HHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEE-eCCHHHHHHHHHHHHHHHHhcCCCC
Q 021372 186 STARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRL-AKEPDEFVKLLQQAKSEAAAAFGND 264 (313)
Q Consensus 186 ~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~-v~~~~el~~~~~~~~~~~~~~~~~~ 264 (313)
..++++|+++|||+|+++ .+.+.+++.++++++| |+|+||..|++|+||.+ +++.+++.++++.+... ..
T Consensus 299 ~~tk~lL~~aGIpVP~~~--~~~~~~~~~~~~~~~G-~vVVKP~~G~~G~Gv~v~v~~~~eL~~a~~~a~~~------~~ 369 (547)
T TIGR03103 299 RLTRRLVSEAGLQVPEQQ--LAGNGEAVEAFLAEHG-AVVVKPVRGEQGKGISVDVRTPDDLEAAIAKARQF------CD 369 (547)
T ss_pred HHHHHHHHHcCcCCCCEE--EECCHHHHHHHHHHhC-CEEEEECCCCCCcCeEEecCCHHHHHHHHHHHHhc------CC
Confidence 999999999999999995 7788899999999998 79999999999999997 99999999999987654 26
Q ss_pred cEEEeeccCCCcEEEEEEEEcCCCCEEEEeec
Q 021372 265 GVYLEKYVQNPRHIEFQVLADKYGNVVHFGER 296 (313)
Q Consensus 265 ~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r 296 (313)
.+|+|+||+| .|+++.++. |+++....|
T Consensus 370 ~vlvEe~i~G-~d~Rv~Vig---g~vvaa~~R 397 (547)
T TIGR03103 370 RVLLERYVPG-EDLRLVVID---FEVVAAAVR 397 (547)
T ss_pred cEEEEEeccC-CeEEEEEEC---CEEEEEEEe
Confidence 8999999999 999887663 355555433
No 67
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.74 E-value=3.1e-17 Score=138.91 Aligned_cols=109 Identities=31% Similarity=0.564 Sum_probs=88.1
Q ss_pred HhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhc
Q 021372 181 IMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAA 260 (313)
Q Consensus 181 ~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~ 260 (313)
.+.||..++++++++|||+|+++ .+.+.+++.+++..++||+||||..|++|+||+++++.+++.++++.+.....
T Consensus 1 ~~~dK~~~~~~~~~~gv~~P~~~--~~~~~~~~~~~~~~~~~p~vvKp~~g~gs~gv~~~~~~~~l~~~~~~~~~~~~-- 76 (184)
T PF13535_consen 1 RCNDKYRMRELLKKAGVPVPKTR--IVDSEEELRAFAEDLGFPFVVKPVDGSGSRGVFIVHSPEELEAALAEIREDSP-- 76 (184)
T ss_dssp -TCCHHHHHHHHHHHTS----EE--EECSHHHHHHHHHHSSSSEEEEESS-STTTT-EEESSHHHHHHHHHHHHHHHS--
T ss_pred CCCCHHHHHHHHHHcCcCCCCEE--EECCHHHHHHHHHHcCCCEEEEcCccccCCCEEEeCCHHHHHHHHHHHHHhcc--
Confidence 37899999999999999999995 89999999999999999999999999999999999999999999999876641
Q ss_pred CCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEee
Q 021372 261 FGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGE 295 (313)
Q Consensus 261 ~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~ 295 (313)
.....+++||||+| .|+++.++.+ +|+++.+.-
T Consensus 77 ~~~~~~ivqe~i~g-~e~~~~~~~~-~G~~~~~~~ 109 (184)
T PF13535_consen 77 LGNGPVIVQEYIPG-DEYSVDGVVD-DGEVVFAGI 109 (184)
T ss_dssp -HSSSEEEEE---S-EEEEEEEEEE-TTEEEEEEE
T ss_pred cCCccEEEEEeeee-eeEEEEEEEE-cceEEEEEE
Confidence 11368999999999 9999999999 888866643
No 68
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=99.73 E-value=3.2e-16 Score=148.06 Aligned_cols=207 Identities=18% Similarity=0.218 Sum_probs=158.8
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHc-CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~-G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi 148 (313)
|+.+|||+|+|..-..++..|++. -+.-+.+.+...-.+ +.-+.....+ +-+..|.+++..+|++++|..|+
T Consensus 1 ~~~~vLviGsGgREHal~wkL~qSp~v~~v~vaPGn~G~a--~~~~~~~~~~-----dI~~~d~~ala~f~~e~~I~lVv 73 (788)
T KOG0237|consen 1 ERVNVLVIGSGGREHALAWKLKQSPKVKKVYVAPGNGGTA--SGDASKVPNL-----DISVADFEALASFCKEHNINLVV 73 (788)
T ss_pred CceEEEEEcCCchHhHHHHHhhcCCccceEEEccCCCCcc--cCccccCccc-----ccChhhHHHHHHHHHHcceeEEE
Confidence 467899999987666777777775 333333332222111 1111111111 11235788999999999999999
Q ss_pred eccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhC-CcEEEe
Q 021372 149 PGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELG-FPVMIK 227 (313)
Q Consensus 149 p~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg-~P~VvK 227 (313)
++.. ..-..-+...+.+.||+++||+.++..+-.+|..+++++.++|||+..| ..+++++++..+.+..+ .++|||
T Consensus 74 vGPE-~PL~~Gl~~~l~~~gi~~FGPs~~aAqlE~sK~fsK~fm~r~~IPTA~y--~~ft~~e~a~sfi~~~~~~~~ViK 150 (788)
T KOG0237|consen 74 VGPE-LPLVAGLADVLRSAGIPCFGPSKQAAQLEASKNFSKDFMHRHNIPTAKY--KTFTDPEEAKSFIQSATDKALVIK 150 (788)
T ss_pred ECCc-hhhhhhhhhhhhccCcceeCchHHHHHhhhhHHHHHHHHHhcCCCccee--eeeCCHHHHHHHHHhCCCcceEEe
Confidence 8862 1111356788889999999999999999999999999999999999998 58999999999999988 569999
Q ss_pred eccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCC
Q 021372 228 ATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY 287 (313)
Q Consensus 228 P~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~ 287 (313)
...-+.|+||.+..+.+|.-++++.+.....-......++|||+++| .|+++-.+.|+.
T Consensus 151 AdGLAAGKGViv~~~~~EA~eAv~sIl~~~~fg~AG~tvViEE~LEG-eEvS~laftDG~ 209 (788)
T KOG0237|consen 151 ADGLAAGKGVIVAKSKEEAFEAVDSILVKKVFGSAGKTVVIEELLEG-EEVSFLAFTDGY 209 (788)
T ss_pred ecccccCCceEeeccHHHHHHHHHHHHhhhhhccccceEehhhhcCc-ceEEEEEEecCc
Confidence 99999999999999999999999988754422222468999999999 999999999974
No 69
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=2e-16 Score=145.23 Aligned_cols=200 Identities=22% Similarity=0.318 Sum_probs=135.4
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCce-EEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccCcCccc-HH
Q 021372 82 IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADES-VCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAEN-AV 159 (313)
Q Consensus 82 ~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~-~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g~~~e~-~~ 159 (313)
......++++++|+++..+++...........+... ..+.. ............+.......|++++..+..... ..
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~D~i~~R~~~~~~~~~~ 95 (318)
T COG0189 18 TTFALMEAAQKRGHELAILDDGDLSLRKGEIKALARLVEVGE--VIGLHYELIEEEDLSLLDELDVIIMRKDPPFDFATR 95 (318)
T ss_pred hHHHHHHHHHhhCceEEEEcccccccccchhHHHHHhhhhhh--ccccccccccccccchhccCCEEEEecCCchhhHHH
Confidence 477888999999999998865433222111111100 00000 000000001111122334689999875433333 45
Q ss_pred HHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHH-HhCCcEEEeeccCCCCccEE
Q 021372 160 FVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLAD-ELGFPVMIKATAGGGGRGMR 238 (313)
Q Consensus 160 ~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~-~lg~P~VvKP~~g~gg~GV~ 238 (313)
+++.++..|.+++ ++++++..+.||..+.++|...|+|+|+|. +..+.+++..+.+ .+|||+|+||..|++|+||.
T Consensus 96 ~~~~~E~~G~~vi-N~p~~i~~~~nK~~~~~~l~~~~ipvP~T~--i~~~~~~~~~~~~~~~g~pvVlKp~~Gs~G~gV~ 172 (318)
T COG0189 96 FLRLAERKGVPVI-NDPQSIRRCRNKLYTTQLLAKAGIPVPPTL--ITRDPDEAAEFVAEHLGFPVVLKPLDGSGGRGVF 172 (318)
T ss_pred HHHHHHHcCCeEE-CCHHHHHhhhhHHHHHHHHHhcCCCCCCEE--EEcCHHHHHHHHHHhcCCCEEEeeCCCCCccceE
Confidence 6778899999998 899999999999999999999999999995 7778666655554 56899999999999999999
Q ss_pred EeCCHH-HHHHHHHHHHHHHHhcCCCCcEEEeeccCC-CcEEEEEEEEcCCCCEEEE
Q 021372 239 LAKEPD-EFVKLLQQAKSEAAAAFGNDGVYLEKYVQN-PRHIEFQVLADKYGNVVHF 293 (313)
Q Consensus 239 ~v~~~~-el~~~~~~~~~~~~~~~~~~~vlvEe~I~G-~~e~~v~v~~d~~G~vv~~ 293 (313)
++++.+ ++.+.++.+.+. +...+|+||||+- .+++..-++.| +.++..
T Consensus 173 ~v~~~d~~l~~~~e~~~~~-----~~~~~ivQeyi~~~~~~~rrivv~~--~~~~~~ 222 (318)
T COG0189 173 LVEDADPELLSLLETLTQE-----GRKLIIVQEYIPKAKRDDRRVLVGG--GEVVAI 222 (318)
T ss_pred EecCCChhHHHHHHHHhcc-----ccceEehhhhcCcccCCcEEEEEeC--CEEeEE
Confidence 999999 888888776543 1246999999997 33555555555 345443
No 70
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.68 E-value=4.2e-16 Score=153.44 Aligned_cols=206 Identities=19% Similarity=0.298 Sum_probs=178.6
Q ss_pred ccEEEEEcCCHh-----------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHH
Q 021372 71 QEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA 139 (313)
Q Consensus 71 ~~~ILIig~g~~-----------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~ 139 (313)
.+-++|+|+|.. +..-+|.|+++|++++.+..+|...+.+...||..| .+ ....+.++++.
T Consensus 918 ~~g~mVlGsGvYrIGSSVEFDwcaV~~~rtLr~~g~kTimvNyNPETVSTDyDecdrLY-Fe-------eis~E~vmDiY 989 (1435)
T KOG0370|consen 918 EHGVMVLGSGVYRIGSSVEFDWCAVGCARTLRKLGKKTIMVNYNPETVSTDYDECDRLY-FE-------EISYERVMDIY 989 (1435)
T ss_pred CCceEEEcccceecccceeechhhhhHHHHHHHcCCceEEEecCcccccCchHHHhhHh-Hh-------hhhhhhhhhhh
Confidence 356899998763 788999999999999999999999999999999877 32 36678999999
Q ss_pred HhcCCCEEeeccC-cCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHH
Q 021372 140 ISRGCTMLHPGYG-FLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLAD 218 (313)
Q Consensus 140 ~~~~id~vip~~g-~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~ 218 (313)
..+...+++...| .+..+ ++--|.+.|++++|.+++.|..+.|+..+.+.|.+.||..|+| ...++.+++.+|++
T Consensus 990 e~E~~~G~iis~GGQ~pnN--iA~~L~r~~~kilGTsP~~ID~AEnR~kFS~~Ld~i~v~Qp~W--kelt~~~eA~~F~~ 1065 (1435)
T KOG0370|consen 990 ELENSEGIIISVGGQLPNN--IALKLHRNGVKILGTSPEMIDSAENRFKFSRMLDSIGVDQPAW--KELTSLEEAKKFAE 1065 (1435)
T ss_pred hhccCCceEEEecCcCcch--hhhHhHhcCCeEecCChHhhhhhhhHHHHHHHHHHcCCCchhh--hhhccHHHHHHHHH
Confidence 9888888887653 44443 3334668899999999999999999999999999999999998 58999999999999
Q ss_pred HhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372 219 ELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 293 (313)
Q Consensus 219 ~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~ 293 (313)
+.||||++.|..=-+|..+-++++.++|+..++++...+ .+.++++-+||+|.+|+.++.+.. +|+++.-
T Consensus 1066 ~VgYP~lvRPSYVLSGaAMnv~~~~~dl~~~L~~A~~vs----~dhPVVisKfie~AkEidvDAVa~-~G~~~~h 1135 (1435)
T KOG0370|consen 1066 KVGYPVLVRPSYVLSGAAMNVVYSESDLKSYLEQASAVS----PDHPVVISKFIEGAKEIDVDAVAS-DGKVLVH 1135 (1435)
T ss_pred hcCCceEecccceecchhhhhhhcHHHHHHHHHHHhhcC----CCCCEEhHHhhcccceechhhhcc-CCeEEEE
Confidence 999999999999889999999999999999999886654 568999999999999999999987 6677644
No 71
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=99.65 E-value=9.7e-16 Score=134.46 Aligned_cols=208 Identities=19% Similarity=0.206 Sum_probs=150.8
Q ss_pred EEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccC
Q 021372 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYG 152 (313)
Q Consensus 73 ~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g 152 (313)
-|+|+|+....+.++|++.+..+.|.++..+...+. .++++...... +.++++ ..+..|.+++.+++....+..-.
T Consensus 5 gviilGgahgtlalARSfg~~~vpv~~ls~d~plPt-~Sr~vr~t~~w-~gphd~--gaiafLrd~Aekhglkg~LLva~ 80 (415)
T COG3919 5 GVIILGGAHGTLALARSFGEEFVPVLALSADGPLPT-YSRIVRVTTHW-NGPHDE--GAIAFLRDFAEKHGLKGYLLVAC 80 (415)
T ss_pred ceEEEcccchhHHHHHhhccccceEEEEecCCCCcc-hhhhheeeecc-CCCCcc--cHHHHHHHHHhhcCcCceEEEec
Confidence 489999888889999999999999998876544443 78888776644 334433 34889999999998764433211
Q ss_pred cCccc---HHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372 153 FLAEN---AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (313)
Q Consensus 153 ~~~e~---~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~ 229 (313)
-..|. .+..+.+.+ -+.++-|++..++...+|-.++..++++|+|+|.|| .+++..+. ...++-||+|+||-
T Consensus 81 GDgev~lvSq~reeLSa-~f~v~lp~w~~l~wlceKPllY~ra~elgl~~P~Ty--~v~S~~d~--~~~el~FPvILKP~ 155 (415)
T COG3919 81 GDGEVLLVSQYREELSA-FFEVPLPDWALLRWLCEKPLLYNRAEELGLPYPKTY--LVNSEIDT--LVDELTFPVILKPG 155 (415)
T ss_pred CCceeeehHhhHHHHHH-HhcCCCCcHHHHHHHhhCcHHHHHHHHhCCCCcceE--Eecchhhh--hhhheeeeEEecCC
Confidence 11232 223333322 223334799999999999999999999999999997 77766654 55688899999998
Q ss_pred cCC-----CCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCc--EEEEEEEEcCCCCEEEE
Q 021372 230 AGG-----GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPR--HIEFQVLADKYGNVVHF 293 (313)
Q Consensus 230 ~g~-----gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~--e~~v~v~~d~~G~vv~~ 293 (313)
.|+ +-..++.+.|.+|+..++..+.++. +.++++|||||+|+. .++...+.|+..+|..+
T Consensus 156 mgg~~~~~araKa~~a~d~ee~k~a~~~a~eei----gpDnvvvQe~IPGGgE~qfsyaAlw~~g~pvaef 222 (415)
T COG3919 156 MGGSVHFEARAKAFTAADNEEMKLALHRAYEEI----GPDNVVVQEFIPGGGENQFSYAALWDKGHPVAEF 222 (415)
T ss_pred CCCcceeehhhheeeccCHHHHHHHHHHHHHhc----CCCceEEEEecCCCCcccchHHHHHhCCCchhhh
Confidence 877 3345677899999999888876653 678999999999943 45666777755455333
No 72
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.63 E-value=1.7e-14 Score=132.18 Aligned_cols=174 Identities=21% Similarity=0.284 Sum_probs=140.9
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec-cCcCcccHHHH
Q 021372 83 AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG-YGFLAENAVFV 161 (313)
Q Consensus 83 a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~-~g~~~e~~~~~ 161 (313)
+..++++++..|+.+.-++.+.... +.... .... ....++|.++|. +|+..|+..+.
T Consensus 23 a~~v~~~l~~~~~~~~~~~~~~~~~----------~~~~~-------~~~~-----~~~~~~~vvfp~lhG~~gEDg~iq 80 (317)
T COG1181 23 AKAVLRALKGFGYDVTPVDITEAGL----------WMLDK-------EVTK-----RVLQKADVVFPVLHGPYGEDGTIQ 80 (317)
T ss_pred HHHHHHHHhhcCceeEEEeccccce----------EEecc-------ccch-----hhcccCCEEEEeCCCCCCCCchHH
Confidence 7889999999999998886554211 11110 0000 122457888986 68888999999
Q ss_pred HHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCC----CHHHHHHHHHHhCCcEEEeeccCCCCccE
Q 021372 162 EMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQ----STEEAVKLADELGFPVMIKATAGGGGRGM 237 (313)
Q Consensus 162 ~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~----~~~~~~~~~~~lg~P~VvKP~~g~gg~GV 237 (313)
.+++-+|+|+.|++..+...+.||..++.+++..|+|++++. ... +.....+....++||++|||...+++.|+
T Consensus 81 g~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~--~~~~~~~~~~~~e~~~~~l~~p~~Vkp~~~gSSvg~ 158 (317)
T COG1181 81 GLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYV--ALTRDEYSSVIVEEVEEGLGFPLFVKPAREGSSVGR 158 (317)
T ss_pred HHHHHhCCCEecCchhhhhhcccHHHHHHHHHHCCCCcccee--eeecccchhHHHHHhhcccCCCEEEEcCCccceeeE
Confidence 999999999999999999999999999999999999999985 333 22334566678899999999999999999
Q ss_pred EEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCC
Q 021372 238 RLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY 287 (313)
Q Consensus 238 ~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~ 287 (313)
.++++.+++..+++.+... +.++++|+|+.| +|++|.++.+..
T Consensus 159 ~~v~~~~d~~~~~e~a~~~------d~~vl~e~~~~~-rei~v~vl~~~~ 201 (317)
T COG1181 159 SPVNVEGDLQSALELAFKY------DRDVLREQGITG-REIEVGVLGNDY 201 (317)
T ss_pred EEeeeccchHHHHHHHHHh------CCceeeccCCCc-ceEEEEecCCcc
Confidence 9999999999988887765 489999999998 999999998844
No 73
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.61 E-value=5e-15 Score=152.85 Aligned_cols=154 Identities=28% Similarity=0.421 Sum_probs=119.6
Q ss_pred CHHHHHHHHHhcCCCEEeeccCcCccc--HHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCC
Q 021372 131 LIPNVLSAAISRGCTMLHPGYGFLAEN--AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQ 208 (313)
Q Consensus 131 ~~~~l~~~~~~~~id~vip~~g~~~e~--~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~ 208 (313)
+...|++.|.+++|.+.....+.+... ....+.+... ..--.+..++..+.||..++++|+++|||+|++. .+.
T Consensus 160 st~~i~~~a~~rgip~~~l~~~~~~qlg~g~~~~~~~~~--~t~~~s~ia~~ia~DK~~tk~lL~~~GIpvP~~~--~~~ 235 (864)
T TIGR02068 160 STAAIVDEAEKRGIPYMRLSAGSLVQLGYGSRQKRIQAT--ETDRTSAIAVEIACDKDLTKEILSDAGVPVPEGT--VVQ 235 (864)
T ss_pred cHHHHHHHHHHCCCCEEEECCCCEEEecCCCEEEEEEee--cCCCCcHHHHHHHcCHHHHHHHHHHcCcCCCCEE--EEC
Confidence 467899999999988776432211111 0000001000 1112578899999999999999999999999995 889
Q ss_pred CHHHHHHHHHHhCCcEEEeeccCCCCccEEE-eCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCC
Q 021372 209 STEEAVKLADELGFPVMIKATAGGGGRGMRL-AKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY 287 (313)
Q Consensus 209 ~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~-v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~ 287 (313)
+.+++.++++++|||+|+||..|++|+||.+ +++.+++.++++.+... +..+|||+||+| +||++.++ +
T Consensus 236 s~~ea~~~~~~ig~PvVVKP~~g~~G~GV~l~v~s~~el~~a~~~a~~~------~~~vlVEefI~G-~e~rvlVv---~ 305 (864)
T TIGR02068 236 SAEDAWEAAQDLGYPVVIKPYDGNHGRGVTINILTRDEIESAYEAAVEE------SSGVIVERFITG-RDHRLLVV---G 305 (864)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCCccCEEEEeCCHHHHHHHHHHHHhh------CCcEEEEEeccC-CEEEEEEE---C
Confidence 9999999999999999999999999999998 99999999999987654 268999999999 99999776 3
Q ss_pred CCEEEEeeccc
Q 021372 288 GNVVHFGERDC 298 (313)
Q Consensus 288 G~vv~~~~r~~ 298 (313)
|+++....|..
T Consensus 306 ~~vvaa~~R~p 316 (864)
T TIGR02068 306 GKVVAVAERVP 316 (864)
T ss_pred CEEEEEEEecC
Confidence 47888866644
No 74
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.61 E-value=1.8e-14 Score=145.92 Aligned_cols=111 Identities=25% Similarity=0.328 Sum_probs=92.5
Q ss_pred CCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHh-CCcEEEeeccCCCCccEEEe---CCHHHHHHH
Q 021372 174 PNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL-GFPVMIKATAGGGGRGMRLA---KEPDEFVKL 249 (313)
Q Consensus 174 ~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~l-g~P~VvKP~~g~gg~GV~~v---~~~~el~~~ 249 (313)
++..+...+.||..++++|+++|||+|++. .+.+.+++.+....+ |||+||||..|++|+||.++ ++.+++.++
T Consensus 478 ~s~~s~~~~~DK~~tk~lL~~~GIpvP~~~--~~~~~e~a~~~~~~~~g~PvVVKP~~g~~G~GV~~~~~~~~~eel~~A 555 (752)
T PRK02471 478 DNYISPLIMENKVVTKKILAEAGFPVPAGD--EFTSLEEALADYSLFADKAIVVKPKSTNFGLGISIFKEPASLEDYEKA 555 (752)
T ss_pred CHHHHHHHhhCHHHHHHHHHHCCcCCCCEE--EEcCHHHHHHHHHHhcCCCEEEEECCCCCcCCeEEecCcCCHHHHHHH
Confidence 345567788999999999999999999984 778888887777664 89999999999999999985 568888888
Q ss_pred HHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeec
Q 021372 250 LQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGER 296 (313)
Q Consensus 250 ~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r 296 (313)
++.+... +..+||||||+| +||+|.++. |+++....|
T Consensus 556 ~~~a~~~------~~~vlVEEfI~G-~E~Rv~Vig---gkvvaa~~R 592 (752)
T PRK02471 556 LEIAFRE------DSSVLVEEFIVG-TEYRFFVLD---GKVEAVLLR 592 (752)
T ss_pred HHHHHhc------CCcEEEEecccC-CEEEEEEEC---CEEEEEEEE
Confidence 8876543 368999999999 999998883 477777665
No 75
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.59 E-value=1.9e-15 Score=148.93 Aligned_cols=207 Identities=21% Similarity=0.312 Sum_probs=180.1
Q ss_pred ccEEEEEcCCHh-----------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHH
Q 021372 71 QEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA 139 (313)
Q Consensus 71 ~~~ILIig~g~~-----------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~ 139 (313)
.+++||+|+|.+ |-+.++++++.|+.++++.++.........++|+.+.++ ...+.+...+
T Consensus 377 ~~kVlvlGSGGLsIGQAGEFDYSGsQAiKAlkEe~i~TiLiNPNIAtvQts~~lAD~vyflp--------vT~~~vt~vi 448 (1435)
T KOG0370|consen 377 VKKVLVLGSGGLSIGQAGEFDYSGSQAIKALKEENIFTILINPNIATVQTSKGLADKVYFLP--------VTPEYVTKVI 448 (1435)
T ss_pred ccEEEEEccCCccccccceeeeeHHHHHHhhhhcccEEEEECCcccccccccccceEEEEee--------cCHHHHHHHH
Confidence 589999997764 678999999999999999888777777778999999884 5677888888
Q ss_pred HhcCCCEEeeccCcC-ccc--HH--HHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHH
Q 021372 140 ISRGCTMLHPGYGFL-AEN--AV--FVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAV 214 (313)
Q Consensus 140 ~~~~id~vip~~g~~-~e~--~~--~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~ 214 (313)
+.+.+|+++.++|.- .-+ .. -...++..+++++|.+.+++....|+..+.+.+.+.+.++.++ ..+++.+++.
T Consensus 449 ~~erPd~il~tfggqtaLncgvel~k~gvf~~~~vkvLgt~i~ti~ttedr~lfa~am~ei~e~ia~s--~a~~sie~al 526 (1435)
T KOG0370|consen 449 KAERPDGILLTFGGQTALNCGVELDKAGVFAQYGVKVLGTPIQTIITTEDRDLFARALNEINEKIAPS--EAVSTIEEAL 526 (1435)
T ss_pred HhhCCCeEEEecCCccccccceeeeecccccccchhhhCCCcccceeeccHHHHHHHHHhhcccccch--hhHhHHHHHH
Confidence 999999999987521 111 11 2346778899999999999999999999999999999999998 4899999999
Q ss_pred HHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372 215 KLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 293 (313)
Q Consensus 215 ~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~ 293 (313)
++++.+|||+++.....-||.|--++++.+||.+........+ .+++||+-+.|++|+..++++|..++++.+
T Consensus 527 ~aae~l~ypvivRaayalgglgSgfa~n~eeL~~l~~~a~a~s------~QilvekSlkGwkevEyevvrDa~~nciTv 599 (1435)
T KOG0370|consen 527 EAAERLGYPVIVRAAYALGGLGSGFANNEEELQDLAAQALALS------PQILVEKSLKGWKEVEYEVVRDAYDNCITV 599 (1435)
T ss_pred HHHHhcCcHHHHHHHHHhcCccccccccHHHHHHHHhhccccC------ceeeehhhhccccceEEEEEeccccchhhh
Confidence 9999999999999999999999999999999999888776543 899999999999999999999998888776
No 76
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.56 E-value=3.7e-14 Score=141.88 Aligned_cols=111 Identities=24% Similarity=0.300 Sum_probs=93.0
Q ss_pred CCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHh-CCcEEEeeccCCCCccEEEeCC---HHHHHHH
Q 021372 174 PNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL-GFPVMIKATAGGGGRGMRLAKE---PDEFVKL 249 (313)
Q Consensus 174 ~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~l-g~P~VvKP~~g~gg~GV~~v~~---~~el~~~ 249 (313)
.+..+..++.||..++++|+++|||+|++. .+.+.+++.+....+ +||+||||..|++|+||.++.+ .+++.++
T Consensus 465 tS~ia~~i~~DK~~TK~iL~~aGIPVP~g~--~~~~~~~a~~~~~~~~g~PVVVKP~~g~~G~GVsi~~~~~~~eel~~A 542 (737)
T TIGR01435 465 DNYVSPLIMENKVVTKKVLAEAGFRVPFGD--EFSSQALALEAFSLFENKAIVVKPKSTNYGLGITIFKNGFTLEDFQEA 542 (737)
T ss_pred ccHHHHHHhcCHHHHHHHHHHcCcCCCCEE--EECCHHHHHHHHHHhcCCCEEEeeCCCCCcCCeEEecCcCCHHHHHHH
Confidence 456678899999999999999999999984 778877777666666 6999999999999999999765 7888888
Q ss_pred HHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeec
Q 021372 250 LQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGER 296 (313)
Q Consensus 250 ~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r 296 (313)
+..+... +..+|||+||+| +||+|.|+.+ +++.+..|
T Consensus 543 l~~A~~~------~~~VLVEefI~G-~EyRv~VIg~---kvvaa~~R 579 (737)
T TIGR01435 543 LNIAFSE------DSSVIIEEFLPG-TEYRFFVLND---KVEAVLLR 579 (737)
T ss_pred HHHHHhc------CCeEEEEecccC-CEEEEEEECC---eEEEEEEE
Confidence 8776543 368999999999 9999999854 67766554
No 77
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.56 E-value=2.7e-14 Score=123.45 Aligned_cols=95 Identities=25% Similarity=0.488 Sum_probs=74.7
Q ss_pred HHHHCCCCCCCCCcccCCCHHH----HHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcE
Q 021372 191 TMKNAGVPTVPGSDGLLQSTEE----AVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGV 266 (313)
Q Consensus 191 ~l~~~Gip~p~~~~~~~~~~~~----~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~v 266 (313)
+++++|||+|+++ .+...+. ..+....++||+||||..+++|.||.++++.+||.++++.+.+. +..+
T Consensus 1 l~~~~gI~tp~~~--~~~~~~~~~~~~~~~~~~l~~P~~VKP~~~GsS~Gi~~v~~~~el~~ai~~~~~~------~~~v 72 (203)
T PF07478_consen 1 LLKSAGIPTPPYV--VVKKNEDDSDSIEKILEDLGFPLFVKPASEGSSIGISKVHNEEELEEAIEKAFKY------DDDV 72 (203)
T ss_dssp HHHHTT-BB-SEE--EEETTSHHHHHHHHHHHHHSSSEEEEESSTSTTTTEEEESSHHHHHHHHHHHTTT------HSEE
T ss_pred ChhhcCCCCCCEE--EEecccccchhHHHHHhhcCCCEEEEECCCCccEEEEEcCCHHHHHHHHHHHhhh------cceE
Confidence 5789999999996 4443322 23567789999999999999999999999999999999988654 3799
Q ss_pred EEeeccCCCcEEEEEEEEcCCCCEEEEe
Q 021372 267 YLEKYVQNPRHIEFQVLADKYGNVVHFG 294 (313)
Q Consensus 267 lvEe~I~G~~e~~v~v~~d~~G~vv~~~ 294 (313)
||||||+| +|++|.++.++...+....
T Consensus 73 lVEefI~G-~E~tv~vl~~~~~~~~~~~ 99 (203)
T PF07478_consen 73 LVEEFISG-REFTVGVLGNGEPRVLPPV 99 (203)
T ss_dssp EEEE--SS-EEEEEEEEESSSTEEEEEE
T ss_pred EEEeeecc-cceEEEEEecCCcccCceE
Confidence 99999999 9999999998764554443
No 78
>PRK12458 glutathione synthetase; Provisional
Probab=99.54 E-value=3.1e-13 Score=125.66 Aligned_cols=194 Identities=14% Similarity=0.179 Sum_probs=123.6
Q ss_pred CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCC--CCCCcCCHHHHHHH-------HHhcCCCEEee
Q 021372 79 RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAP--SSQSYLLIPNVLSA-------AISRGCTMLHP 149 (313)
Q Consensus 79 ~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~--~~~~~~~~~~l~~~-------~~~~~id~vip 149 (313)
...+...++.+++++||++.+++............+.....+.... ..+.+ . ...+. ..-..+|+|++
T Consensus 9 ~~~st~~l~~~a~~rgh~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~l~~~d~V~~ 85 (338)
T PRK12458 9 ETDTTLRLAHEAVNRGHEVAYTTPGDLTIRDDEALAFCAVTKKGKKYKKPENF--L-SFLKKAEFKKERLPLAGFDVIFL 85 (338)
T ss_pred CCchHHHHHHHHHHcCCEEEEEecCcEEEECCEEEEEEEEEEecCcccCccch--h-hHhhccccccccCchhhCCEEEE
Confidence 3456889999999999999998654432221122221111121000 00100 0 01110 11134899998
Q ss_pred ccC--cCcccHHHH--------HHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHH
Q 021372 150 GYG--FLAENAVFV--------EMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADE 219 (313)
Q Consensus 150 ~~g--~~~e~~~~~--------~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~ 219 (313)
-.+ ...+...++ ..++..|++++ ++++++..+.||..+.++++ +++|+|+ +..+.+++.++.++
T Consensus 86 R~~~~~~~~~~~~l~~~~~~~~~~~e~~g~~vi-N~p~~i~~~~dK~~~~~l~~---~~vP~T~--v~~~~~~~~~~~~~ 159 (338)
T PRK12458 86 RANPPLDPLARNWADSVGIAFGRLAARDGVLVV-NDPDGLRIANNKLYFQSFPE---EVRPTTH--ISRNKEYIREFLEE 159 (338)
T ss_pred eCCCCCChHHHHHHHHhchhHHHHHHhCCCeEe-cCHHHHHhccCHHHHHhhcc---CCCCCEE--EeCCHHHHHHHHHH
Confidence 532 111111222 33356788877 99999999999999987665 6889985 67788889889888
Q ss_pred hCCc-EEEeeccCCCCccEEEeCCHHH--HHHHHHHHHHHHHhcCCCCcEEEeeccCC--CcEEEEEEEEcCCCCEE
Q 021372 220 LGFP-VMIKATAGGGGRGMRLAKEPDE--FVKLLQQAKSEAAAAFGNDGVYLEKYVQN--PRHIEFQVLADKYGNVV 291 (313)
Q Consensus 220 lg~P-~VvKP~~g~gg~GV~~v~~~~e--l~~~~~~~~~~~~~~~~~~~vlvEe~I~G--~~e~~v~v~~d~~G~vv 291 (313)
.++| +|+||..|++|+||+++++.++ +...++.+.. ..++|+|+||++ ..++++.++ +|+++
T Consensus 160 ~~~~pvVvKPl~G~gG~gV~~v~~~~~~~~~~ile~~~~-------~~~~ivQeyI~~~~~gDiRv~vv---~g~~v 226 (338)
T PRK12458 160 SPGDKMILKPLQGSGGQGVFLIEKSAQSNLNQILEFYSG-------DGYVIAQEYLPGAEEGDVRILLL---NGEPL 226 (338)
T ss_pred cCCCeEEEEECCCCCccCeEEEecCChhhHHHHHHHHhh-------CCCEEEEEcccCCCCCCEEEEEE---CCEEE
Confidence 8765 9999999999999999976653 5555544322 258999999986 346666654 34666
No 79
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=99.54 E-value=4.6e-14 Score=119.74 Aligned_cols=104 Identities=30% Similarity=0.507 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcE-EEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCC
Q 021372 184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPV-MIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG 262 (313)
Q Consensus 184 DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~-VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~ 262 (313)
+|..+|++|+++|||++++ ..+++.+++.+++++.++|+ |||+..-++|+||.++.|.+|..++++++.... .++
T Consensus 2 SK~faK~fm~~~~IPTa~~--~~f~~~~~A~~~l~~~~~p~~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~~--~fg 77 (194)
T PF01071_consen 2 SKSFAKEFMKRYGIPTAKY--KVFTDYEEALEYLEEQGYPYVVIKADGLAAGKGVVIADDREEALEALREIFVDR--KFG 77 (194)
T ss_dssp BHHHHHHHHHHTT-SB--E--EEESSHHHHHHHHHHHSSSEEEEEESSSCTTTSEEEESSHHHHHHHHHHHHTSS--TTC
T ss_pred CHHHHHHHHHHcCCCCCCe--eEECCHHHHHHHHHhcCCCceEEccCCCCCCCEEEEeCCHHHHHHHHHHhcccc--ccC
Confidence 7999999999999999988 49999999999999999999 999999999999999999999999999987532 233
Q ss_pred --CCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372 263 --NDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 293 (313)
Q Consensus 263 --~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~ 293 (313)
...++||||+.| .|+++.++.|++ +++.+
T Consensus 78 ~~~~~vvIEE~l~G-~E~S~~a~~dG~-~~~~l 108 (194)
T PF01071_consen 78 DAGSKVVIEEFLEG-EEVSLFALTDGK-NFVPL 108 (194)
T ss_dssp CCGSSEEEEE---S-EEEEEEEEEESS-EEEEE
T ss_pred CCCCcEEEEeccCC-eEEEEEEEEcCC-eEEEC
Confidence 468999999999 999999999976 44444
No 80
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.52 E-value=3.7e-14 Score=121.49 Aligned_cols=104 Identities=32% Similarity=0.525 Sum_probs=66.9
Q ss_pred hCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHh-CCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhc
Q 021372 182 MGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL-GFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAA 260 (313)
Q Consensus 182 ~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~l-g~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~ 260 (313)
+.||..+.++|+++|||+|+|. ++.+.+++.++.+++ ++|+|+||..|+.|.||.++++.+++...++.....
T Consensus 1 a~dK~~~~~~l~~~gipvP~t~--~~~~~~~~~~~~~~~~~~p~ViKp~~g~~G~gV~~i~~~~~~~~~l~~~~~~---- 74 (190)
T PF08443_consen 1 AEDKLLTLQLLAKAGIPVPETR--VTNSPEEAKEFIEELGGFPVVIKPLRGSSGRGVFLINSPDELESLLDAFKRL---- 74 (190)
T ss_dssp -HBHHHHHHHHHHTT-----EE--EESSHHHHHHHHHHH--SSEEEE-SB-------EEEESHCHHHHHHH---------
T ss_pred CCCHHHHHHHHHHCCcCCCCEE--EECCHHHHHHHHHHhcCCCEEEeeCCCCCCCEEEEecCHHHHHHHHHHHHhc----
Confidence 3699999999999999999995 888999999999999 899999999999999999999999999988765432
Q ss_pred CCCCcEEEeeccCCC--cEEEEEEEEcCCCCEEEEeec
Q 021372 261 FGNDGVYLEKYVQNP--RHIEFQVLADKYGNVVHFGER 296 (313)
Q Consensus 261 ~~~~~vlvEe~I~G~--~e~~v~v~~d~~G~vv~~~~r 296 (313)
...+++|+||+.. ++++|.++.+ +++....|
T Consensus 75 --~~~~~~Q~fI~~~~g~d~Rv~Vig~---~vv~a~~r 107 (190)
T PF08443_consen 75 --ENPILVQEFIPKDGGRDLRVYVIGG---KVVGAYRR 107 (190)
T ss_dssp --TTT-EEEE----SS---EEEEEETT---EEEEEEE-
T ss_pred --cCcceEeccccCCCCcEEEEEEECC---EEEEEEEE
Confidence 3789999999973 5899988855 66665444
No 81
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=99.51 E-value=8.6e-14 Score=116.71 Aligned_cols=95 Identities=26% Similarity=0.492 Sum_probs=80.6
Q ss_pred HHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEee-ccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEee
Q 021372 192 MKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKA-TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK 270 (313)
Q Consensus 192 l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP-~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe 270 (313)
|+++|||+|+|. .+.+.+++.++++++|||+|+|+ ..|..|+|.+++++.+++..+++.+ +..++|+|+
T Consensus 1 l~~~gip~~~~~--~i~~~~~l~~a~~~iG~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~--------~~~~~ilE~ 70 (172)
T PF02222_consen 1 LDELGIPTAPYA--TIDSLEDLEEAAESIGFPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQEL--------GGGPCILEE 70 (172)
T ss_dssp HHHTT--B-EEE--EESSHHHHHHHHHHHTSSEEEEESSSSCTTTTEEEESSGGGHHHHHHHT--------TTSCEEEEE
T ss_pred CcccCCCCCCeE--EECCHHHHHHHHHHcCCCEEEEccCcCcCCCccEEECCHHHHHHHHHhc--------CCCcEEEEe
Confidence 689999999995 99999999999999999999995 5667999999999999999999886 348999999
Q ss_pred ccCCCcEEEEEEEEcCCCCEEEEeec
Q 021372 271 YVQNPRHIEFQVLADKYGNVVHFGER 296 (313)
Q Consensus 271 ~I~G~~e~~v~v~~d~~G~vv~~~~r 296 (313)
||+..+|+++.+.++.+|++.++.-.
T Consensus 71 ~v~f~~EiSvivaR~~~G~~~~yp~~ 96 (172)
T PF02222_consen 71 FVPFDREISVIVARDQDGEIRFYPPV 96 (172)
T ss_dssp ---ESEEEEEEEEEETTSEEEEEEEE
T ss_pred ccCCcEEEEEEEEEcCCCCEEEEcCc
Confidence 99999999999999999998888654
No 82
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=99.47 E-value=1.2e-12 Score=120.21 Aligned_cols=154 Identities=15% Similarity=0.175 Sum_probs=112.9
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccCcCcc-cHHH-
Q 021372 83 AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAE-NAVF- 160 (313)
Q Consensus 83 a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g~~~e-~~~~- 160 (313)
-..++++++++|+.++.++.+. +.. . +..+|+|+--... .. ...+
T Consensus 38 ~~~l~~~~~~~Gi~~v~Id~~~-pl~--~-----------------------------qgpfDvilhK~~~-~~~~~~~~ 84 (328)
T PLN02941 38 QPSLEALARSKGIDLVAIDPSR-PLS--E-----------------------------QGPFDVILHKLYG-KEWRQQLE 84 (328)
T ss_pred hHHHHHHHHHCCCeEEEecCCC-Ccc--c-----------------------------cCCcCEEEEecCC-HHHHHHHH
Confidence 4568899999999999996542 111 0 0123444322100 01 1122
Q ss_pred HHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCC-------CCCCCCCcccCCCHHHHH---HHHHHhCCcEEEeecc
Q 021372 161 VEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAG-------VPTVPGSDGLLQSTEEAV---KLADELGFPVMIKATA 230 (313)
Q Consensus 161 ~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~G-------ip~p~~~~~~~~~~~~~~---~~~~~lg~P~VvKP~~ 230 (313)
....+..|++++ ++++++..+.||..+.++|+++| ||+|+++ .+.+.+.+. .....++||+|+||..
T Consensus 85 ~~~~e~pgv~vi-dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~--v~~~~~~al~~~~~~~~l~~P~V~KPl~ 161 (328)
T PLN02941 85 EYREKHPDVTVL-DPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQL--VVYDDESSIPDAVALAGLKFPLVAKPLV 161 (328)
T ss_pred HHHHHCCCcEEE-CCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEE--EEcCHHHHHHHHHHHhcCCCCEEEeecc
Confidence 233455688888 89999999999999999999999 9999996 777766533 3346789999999999
Q ss_pred C---CCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccC-CCcEEEEEEEEc
Q 021372 231 G---GGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQ-NPRHIEFQVLAD 285 (313)
Q Consensus 231 g---~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~-G~~e~~v~v~~d 285 (313)
| +.|+++.++.+.++|.. + ..++++||||+ |++.|.|.|++|
T Consensus 162 g~Gss~gh~m~lv~~~~~L~~----l---------~~p~~lQEfVnh~g~d~RVfVvGd 207 (328)
T PLN02941 162 ADGSAKSHKMSLAYDQEGLSK----L---------EPPLVLQEFVNHGGVLFKVYVVGD 207 (328)
T ss_pred cCCCccccceEEecCHHHHHh----c---------CCcEEEEEecCCCCEEEEEEEECC
Confidence 9 89999999999988876 1 25799999994 359999999987
No 83
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.47 E-value=1.2e-12 Score=120.69 Aligned_cols=192 Identities=16% Similarity=0.188 Sum_probs=125.4
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCce-EEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccC--cCcc--
Q 021372 82 IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADES-VCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYG--FLAE-- 156 (313)
Q Consensus 82 ~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~-~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g--~~~e-- 156 (313)
+...++++++++|+++.+++.+.-........+... +.+.. . ...+.....- ....-..+|+|++-.+ +..+
T Consensus 19 st~~L~~aa~~rG~~v~~~~~~~l~~~~~~~~a~~~~~~~~~-~-~~~~~~~~~~-~~~~l~~~D~v~~R~~~~~~~~~~ 95 (312)
T TIGR01380 19 TTFALMEEAQKRGHELFFYEPGDLSVVNGEVFARARPVRVGP-N-KQDWYTLGEK-VRLSLGELDAVLMRKDPPFDMEYI 95 (312)
T ss_pred hHHHHHHHHHHcCCEEEEEehhheEEECCEEEEEEEEEEecc-C-CcceeecCcc-cccccccCCEEEEeCCCCCChhhh
Confidence 578999999999999999965433222111111111 11110 0 1111110000 0011125899997642 1111
Q ss_pred -cHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCc
Q 021372 157 -NAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGR 235 (313)
Q Consensus 157 -~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~ 235 (313)
...+.+.++..|++++ |+++++..+.||..+.+++. ++|+|. ...+.+++.+++++.| |+|+||..|++|+
T Consensus 96 ~~~~~l~~le~~g~~vi-N~p~~i~~~~dK~~~~~~~~----~vP~T~--v~~~~~~~~~~~~~~g-~vVvKPl~G~~G~ 167 (312)
T TIGR01380 96 YATYLLELADPTGTLVI-NSPQGLRDANEKLFTLQFPK----VIPPTL--VTRDKAEIRAFLAEHG-DIVLKPLDGMGGE 167 (312)
T ss_pred HHHHHHHHHHhCCCeEE-eCHHHHHhhhhHHHHhhCcC----CCCCEE--EeCCHHHHHHHHHHcC-CEEEEECCCCCCc
Confidence 1467788888899988 89999999999999888763 799995 6778999999999888 9999999999999
Q ss_pred cEEEeCCH-HHHHHHHHHHHHHHHhcCCCCcEEEeeccCC--CcEEEEEEEEcCCCCEEE
Q 021372 236 GMRLAKEP-DEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN--PRHIEFQVLADKYGNVVH 292 (313)
Q Consensus 236 GV~~v~~~-~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G--~~e~~v~v~~d~~G~vv~ 292 (313)
||+++++. .++...++.+... +..++++|+||+. ..|+++.++. |+++.
T Consensus 168 gv~~v~~~~~~~~~~~~~~~~~-----~~~~~~vQ~yI~~~~~~D~Rv~vv~---g~vv~ 219 (312)
T TIGR01380 168 GIFRLDPGDPNFNSILETMTQR-----GREPVMAQRYLPEIKEGDKRILLID---GEPIG 219 (312)
T ss_pred eEEEEcCCCccHHHHHHHHHhc-----cCCcEEEEeccccccCCCEEEEEEC---CeEEE
Confidence 99998753 3343333332211 2368999999984 3788888774 46554
No 84
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=99.47 E-value=3.4e-12 Score=113.40 Aligned_cols=215 Identities=18% Similarity=0.235 Sum_probs=154.9
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC-cchhhhhhcCceEEccCCCCCCCcCCH--HHHHHHHHhcCCCE
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID-KDALHVKLADESVCIGEAPSSQSYLLI--PNVLSAAISRGCTM 146 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~-~~~~~~~~ad~~~~v~~~~~~~~~~~~--~~l~~~~~~~~id~ 146 (313)
+.-+|..+|+. +|+++.+.|++.|++++++..... ..-.....+++.+.++ +|.++ +++.+..++ -++
T Consensus 17 ~~i~Iat~gSH-SaL~Il~GAK~EGF~Ti~v~~~gr~~~Y~~f~~a~e~i~v~------~f~dil~~~iqe~L~~--~n~ 87 (361)
T COG1759 17 EDITIATIGSH-SALQILDGAKEEGFRTIAVCQRGREKPYEKFPVADEVIIVD------KFSDILNEEIQEELRE--LNA 87 (361)
T ss_pred cceEEEEeecc-hHHHHhhhHHhcCCcEEEEEecCccchHHhhchhheEEEec------hhHHHhhHHHHHHHHH--cCe
Confidence 34567778766 589999999999999999875332 2222333456677664 23221 123333333 456
Q ss_pred EeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEE
Q 021372 147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMI 226 (313)
Q Consensus 147 vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~Vv 226 (313)
|+..++++....-.-....+.-+|++| +...++.-.|...-+.+|+++||+.|+ ..++++|+ .-|+||
T Consensus 88 I~IP~gSfv~Y~G~d~ie~~~~vP~fG-nR~lLrwE~~~~~~~~lLekAgi~~P~----~~~~PeeI-------dr~VIV 155 (361)
T COG1759 88 IFIPHGSFVAYVGYDGIENEFEVPMFG-NRELLRWEEDRKLEYKLLEKAGLRIPK----KYKSPEEI-------DRPVIV 155 (361)
T ss_pred EEecCCceEEEecchhhhhcccCcccc-cHhHhhhhcchhhHHHHHHHcCCCCCc----ccCChHHc-------CCceEE
Confidence 666666665554444455667899997 678888888999999999999999997 45777765 459999
Q ss_pred eeccCCCCccEEEeCCHHHHHHHHHHHHHHHHh-cCCCCcEEEeeccCCCcEEEEEEEEcC-CCCEEEEeeccchhhccc
Q 021372 227 KATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAA-AFGNDGVYLEKYVQNPRHIEFQVLADK-YGNVVHFGERDCSIQVIE 304 (313)
Q Consensus 227 KP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~-~~~~~~vlvEe~I~G~~e~~v~v~~d~-~G~vv~~~~r~~s~~r~~ 304 (313)
|....-||+|-+++.|.+|+.+..+++.+...- .-+-.+..+||||-| ..+.+..+... .++ +-+ .++.||.
T Consensus 156 K~pgAkggRGyFiA~s~eef~ek~e~l~~~gvi~~edlkna~IeEYv~G-~~f~~~yFyS~i~~~-lEl----~g~D~R~ 229 (361)
T COG1759 156 KLPGAKGGRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVVG-APFYFHYFYSPIKDR-LEL----LGIDRRY 229 (361)
T ss_pred ecCCccCCceEEEEcCHHHHHHHHHHHHHcCCcchhhhhhceeeEEeec-cceeeeeeeccccCc-eeE----eeeehee
Confidence 999988999999999999999999988763210 001247899999999 78888888776 433 444 5788998
Q ss_pred ceeEEee
Q 021372 305 IHTHTEI 311 (313)
Q Consensus 305 ~~~ie~~ 311 (313)
+..+|.+
T Consensus 230 Esn~Dg~ 236 (361)
T COG1759 230 ESNLDGL 236 (361)
T ss_pred eccchhh
Confidence 8888876
No 85
>PRK05246 glutathione synthetase; Provisional
Probab=99.46 E-value=1.8e-12 Score=119.74 Aligned_cols=196 Identities=13% Similarity=0.113 Sum_probs=125.8
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCce-EEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccCcC-cc---
Q 021372 82 IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADES-VCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFL-AE--- 156 (313)
Q Consensus 82 ~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~-~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g~~-~e--- 156 (313)
+...++++++++|+++.+++...-......-.+... +.++. ....+..... .+...-..+|+|++..+.. ..
T Consensus 20 st~~l~~aa~~~G~~v~~~~~~dl~~~~~~i~~~~~~~~~~~--~~~~w~~~~~-~~~~~l~~~D~v~~R~~~~~~~~~~ 96 (316)
T PRK05246 20 STFAMMLEAQRRGHELFYYEPDDLSLRGGEVVARARPLTVRD--DKGDWYELGE-EQRLPLADFDVILMRKDPPFDMEYI 96 (316)
T ss_pred hHHHHHHHHHHcCCEEEEEehhhcEEECCEEEEEEEEEEecc--CCccceeccc-cccCccccCCEEEEcCCCCCChHHH
Confidence 478899999999999999865432221111001000 11111 1111110000 0000012389999763211 11
Q ss_pred -cHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCc
Q 021372 157 -NAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGR 235 (313)
Q Consensus 157 -~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~ 235 (313)
...+.+.++..|++++ |+++++..+.||..+.+++. ++|+|. ...+.+++.++.++.+ |+|+||..|++|+
T Consensus 97 ~~~~~l~~le~~g~~v~-N~p~~l~~~~dK~~~~~l~~----~vP~T~--~~~~~~~~~~~~~~~~-~vVlKP~~G~~G~ 168 (316)
T PRK05246 97 YATYLLERAERPGTLVV-NKPQSLRDANEKLFTLWFPE----LMPPTL--VTRDKAEIRAFRAEHG-DIILKPLDGMGGA 168 (316)
T ss_pred HHHHHHHHHHhCCCeEE-CCHHHHHhCccHHHHHhhhc----cCCCEE--EeCCHHHHHHHHHHCC-CEEEEECCCCCcc
Confidence 1346677777899888 89999999999999988766 789984 7788899999999887 9999999999999
Q ss_pred cEEEeCC-HHHHHHHHHHHHHHHHhcCCCCcEEEeeccCC--CcEEEEEEEEcCCCCEEE-Eeec
Q 021372 236 GMRLAKE-PDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN--PRHIEFQVLADKYGNVVH-FGER 296 (313)
Q Consensus 236 GV~~v~~-~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G--~~e~~v~v~~d~~G~vv~-~~~r 296 (313)
||+++.+ ..++...++.+... +..++|+|+||+. ..++++.++ +|++++ ...|
T Consensus 169 gV~~i~~~~~~~~~~~~~l~~~-----~~~~~lvQ~~I~~~~~~D~Rv~vv---~g~vv~~a~~R 225 (316)
T PRK05246 169 GIFRVKADDPNLGSILETLTEH-----GREPVMAQRYLPEIKEGDKRILLV---DGEPVGYALAR 225 (316)
T ss_pred ceEEEeCCCccHHHHHHHHHHc-----cCCeEEEEeccccCCCCCEEEEEE---CCEEhhheeEe
Confidence 9999944 44444444433221 2468999999986 468888877 346666 4444
No 86
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=99.40 E-value=3.3e-12 Score=114.01 Aligned_cols=182 Identities=19% Similarity=0.218 Sum_probs=125.2
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCC--cCCHHHHHHHHHhc--CCCE
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQS--YLLIPNVLSAAISR--GCTM 146 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~--~~~~~~l~~~~~~~--~id~ 146 (313)
+-|||++|-. .+.++.+|.++|++|..++.-..... ...++..++..+...... ..+.++|++++.+. .+|+
T Consensus 11 ~~kiLviGvn--tR~vveSA~klGf~V~sv~~y~~~Dl--~~~a~~~l~~r~~~~~~rfe~~de~~li~~~~~~~~dvD~ 86 (389)
T COG2232 11 SCKILVIGVN--TRPVVESASKLGFEVYSVQYYDPADL--PGDAISYLRERPGELLGRFENLDEQKLIEAAEDLAEDVDA 86 (389)
T ss_pred cceEEEEeec--chHhHHHHHhcCeEEEEeEeeccccc--ccccceEEEecChhhcCcccCCCHHHHHHHHHhhhhhcce
Confidence 4579999965 77899999999999998865333222 234555555533322222 45778999988754 4777
Q ss_pred -EeeccCcCcccHHHHHHHHHcCCceeCCCHH-HHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcE
Q 021372 147 -LHPGYGFLAENAVFVEMCREHGINFIGPNPD-SIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPV 224 (313)
Q Consensus 147 -vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~-~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~ 224 (313)
++|..++...+. --+.+..+.|++++ ....+.+|..+++.++.+|+|.|+.+ .. + ....--+++
T Consensus 87 ~ii~~sg~e~l~~-----~g~~~~~v~~n~P~~~v~~~snk~~~~r~l~~lgmp~p~~~--~~---e----~~~~gekt~ 152 (389)
T COG2232 87 PIIPFSGFEALRT-----SGELGCEVAGNEPEVKVVEASNKLKFYRKLEVLGMPEPSEK--KI---E----PLEEGEKTL 152 (389)
T ss_pred eeeeccccccccc-----cCccccccccCCcHHHHHHHHHHHhhhhhhhhcCCCCChhh--hh---h----hhhhcceee
Confidence 555544332221 12456778888888 88999999999999999999999874 22 1 111223689
Q ss_pred EEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCC
Q 021372 225 MIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY 287 (313)
Q Consensus 225 VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~ 287 (313)
|+||..|+||. +.++.-.++.. ..++|+||||+| ..+++.++.++.
T Consensus 153 IlKPv~GaGG~-~el~~~~Ee~~---------------~~~~i~Qefi~G-~p~Svs~is~g~ 198 (389)
T COG2232 153 ILKPVSGAGGL-VELVKFDEEDP---------------PPGFIFQEFIEG-RPVSVSFISNGS 198 (389)
T ss_pred EEeeccCCCce-eeecccccccC---------------CcceehhhhcCC-ceeEEEEEecCc
Confidence 99999999995 22222112211 168999999999 999999999975
No 87
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=99.31 E-value=2.2e-11 Score=115.54 Aligned_cols=110 Identities=29% Similarity=0.402 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHh-CCcEEEeeccCCCCc----cEEEeCCHHHHHHHHHHHHHHH
Q 021372 183 GDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL-GFPVMIKATAGGGGR----GMRLAKEPDEFVKLLQQAKSEA 257 (313)
Q Consensus 183 ~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~l-g~P~VvKP~~g~gg~----GV~~v~~~~el~~~~~~~~~~~ 257 (313)
.+++.++++|+++|||+|++. .+.+.+++.++++++ |||+|+||....+|+ ||.+..+.+++.++++++....
T Consensus 3 l~e~~ak~lL~~~gIpvp~~~--~~~~~~ea~~~a~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~~~i~~~~ 80 (388)
T PRK00696 3 LHEYQAKELFAKYGVPVPRGI--VATTPEEAVEAAEELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFAKQILGMT 80 (388)
T ss_pred CCHHHHHHHHHHcCCCCCCCe--eeCCHHHHHHHHHHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHHHHhhccc
Confidence 468899999999999999995 899999999999999 999999998544444 8999999999999999887432
Q ss_pred H---hc--CC--CCcEEEeeccCCCcEEEEEEEEcC-CCCEEEEe
Q 021372 258 A---AA--FG--NDGVYLEKYVQNPRHIEFQVLADK-YGNVVHFG 294 (313)
Q Consensus 258 ~---~~--~~--~~~vlvEe~I~G~~e~~v~v~~d~-~G~vv~~~ 294 (313)
. .. .+ ...++||+|++++.|+.+.+..|+ +|.++.++
T Consensus 81 ~~~~~~~~~g~~~~gvlVe~~~~~~~E~~vg~~~D~~fgpvv~~~ 125 (388)
T PRK00696 81 LVTHQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDRATRRVVFMA 125 (388)
T ss_pred eeeeccCCCCCEEeEEEEEeccCCCceEEEEEEEcCCCCceEEEE
Confidence 1 00 01 135999999996699999999997 78887653
No 88
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=99.24 E-value=4.9e-12 Score=105.46 Aligned_cols=89 Identities=20% Similarity=0.346 Sum_probs=46.3
Q ss_pred hCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcC
Q 021372 182 MGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAF 261 (313)
Q Consensus 182 ~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~ 261 (313)
|.||++++++|+++|||+|.++ ..... ....+|+|+||..|+||.|++++++.+++...+..
T Consensus 1 ~~dK~~~~~~L~~~gi~~P~~~--~~~~~-------~~~~~~~viKp~~G~Gg~~i~~~~~~~~~~~~~~~--------- 62 (161)
T PF02655_consen 1 CSDKLKTYKFLKELGIPVPTTL--RDSEP-------EPIDGPWVIKPRDGAGGEGIRIVDSEDELEEFLNK--------- 62 (161)
T ss_dssp -TSHHHHHHHHTTT-S----------EES-------S--SSSEEEEESS-------B--SS--TTE--------------
T ss_pred CCCHHHHHHHHHccCCCCCCcc--ccccc-------cccCCcEEEEeCCCCCCCCeEEECCchhhcccccc---------
Confidence 5799999999999999999542 11111 12368999999999999999999999888776543
Q ss_pred CCCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372 262 GNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 293 (313)
Q Consensus 262 ~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~ 293 (313)
..++||||+| .++++.++.++. +...+
T Consensus 63 ---~~i~Qe~i~G-~~~Sv~~l~~~~-~~~~l 89 (161)
T PF02655_consen 63 ---LRIVQEFIEG-EPYSVSFLASGG-GARLL 89 (161)
T ss_dssp -----EEEE---S-EEEEEEEEE-SS-SEEEE
T ss_pred ---ceEEeeeeCC-EEeEEEEEEeCC-ceEEE
Confidence 2399999999 999999999864 44444
No 89
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=99.23 E-value=1.3e-10 Score=110.24 Aligned_cols=109 Identities=24% Similarity=0.369 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhC-CcEEEeec--cCC-CC-ccEEEeCCHHHHHHHHHHHHHHHH
Q 021372 184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELG-FPVMIKAT--AGG-GG-RGMRLAKEPDEFVKLLQQAKSEAA 258 (313)
Q Consensus 184 DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg-~P~VvKP~--~g~-gg-~GV~~v~~~~el~~~~~~~~~~~~ 258 (313)
+.+..|++|+++|||+|++. .+.+.+++.++++++| ||+|+||. .|+ ++ -||+++.+.+|+.++++++.....
T Consensus 4 ~E~~aK~ll~~~GIpvp~~~--~~~~~~ea~~~~~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l~~~~~ 81 (386)
T TIGR01016 4 HEYQAKQIFAKYGIPVPRGY--VATSVEEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKLLGKEL 81 (386)
T ss_pred cHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHHHhccce
Confidence 56788999999999999985 7899999999999999 99999998 322 22 389999999999999988764211
Q ss_pred hc-------CCCCcEEEeeccCCCcEEEEEEEEcC--CCCEEEEe
Q 021372 259 AA-------FGNDGVYLEKYVQNPRHIEFQVLADK--YGNVVHFG 294 (313)
Q Consensus 259 ~~-------~~~~~vlvEe~I~G~~e~~v~v~~d~--~G~vv~~~ 294 (313)
.. ..-..++||+|+++++|+.+.++.|+ .|.++.++
T Consensus 82 ~~~~~~~~g~~~~~vlVEe~v~~g~E~~v~i~~d~~~~~pvi~~~ 126 (386)
T TIGR01016 82 VTNQTDPLGQPVNKILIEEATDIDKEYYLSIVIDRSARCPVIMAS 126 (386)
T ss_pred eecccCCCCCEeeEEEEEECccCCceEEEEEEEcCCCCceEEEEE
Confidence 00 00136999999995599999999996 56677665
No 90
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=99.21 E-value=1.2e-10 Score=101.58 Aligned_cols=112 Identities=32% Similarity=0.518 Sum_probs=80.0
Q ss_pred hCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCC-----CCccEEE-eCCHHHHHHHHHHHHH
Q 021372 182 MGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGG-----GGRGMRL-AKEPDEFVKLLQQAKS 255 (313)
Q Consensus 182 ~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~-----gg~GV~~-v~~~~el~~~~~~~~~ 255 (313)
..+-...+++|+.+|||+|++. .+.+.+++.++++++|||+++|-.... .--||.+ ++|++++.++++++..
T Consensus 9 ~L~e~e~~~lL~~yGI~~~~~~--~~~~~~ea~~~a~~ig~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v~~a~~~l~~ 86 (222)
T PF13549_consen 9 WLTEAEAKELLAAYGIPVPPTR--LVTSAEEAVAAAEEIGFPVVLKIVSPDIAHKSDVGGVRLNLNSPEEVREAFERLRE 86 (222)
T ss_dssp EE-HHHHHHHHHTTT------E--EESSHHHHHHHHHHH-SSEEEEEE-TT---HHHHT-EEEEE-SHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCcCCCCee--EeCCHHHHHHHHHHhCCCEEEEEecCCCCcCCCCCcEEECCCCHHHHHHHHHHHHH
Confidence 4567788999999999999995 899999999999999999999998654 3337877 8999999999999987
Q ss_pred HHHhcCC---CCcEEEeeccC-CCcEEEEEEEEcC-CCCEEEEee
Q 021372 256 EAAAAFG---NDGVYLEKYVQ-NPRHIEFQVLADK-YGNVVHFGE 295 (313)
Q Consensus 256 ~~~~~~~---~~~vlvEe~I~-G~~e~~v~v~~d~-~G~vv~~~~ 295 (313)
......+ ...++||++++ ++.|+.+.+..|. +|.++.+|-
T Consensus 87 ~~~~~~p~~~~~gvlVq~m~~~~g~El~vG~~~Dp~FGPvv~~G~ 131 (222)
T PF13549_consen 87 RVAAHHPGARIDGVLVQEMAPSGGRELIVGVRRDPQFGPVVMFGL 131 (222)
T ss_dssp HHHHH-TT----EEEEEE------EEEEEEEEEETTTEEEEEEEE
T ss_pred HHHHhCCCCccceEEEEEcccCCcEEEEEEEEECCCCCCEEEEcC
Confidence 7654333 35899999999 5599999999998 899998853
No 91
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=98.92 E-value=9.4e-09 Score=94.02 Aligned_cols=70 Identities=17% Similarity=0.281 Sum_probs=56.1
Q ss_pred CCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHh--CC-cEEEeeccCCCCccEEEeCCHHH
Q 021372 174 PNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL--GF-PVMIKATAGGGGRGMRLAKEPDE 245 (313)
Q Consensus 174 ~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~l--g~-P~VvKP~~g~gg~GV~~v~~~~e 245 (313)
|+.+....+.||..+..+|+++|||+|+|+ .+.+.+...+.+.++ ++ |+|+||..|++|+||.++++.++
T Consensus 27 N~r~~~~~~~DK~~t~~lL~~aglpvP~T~--~~~s~~~~~~~l~~~~~~~~~VVVKPl~Gs~GrGI~~i~~~~~ 99 (317)
T TIGR02291 27 NKRSLYPLVDDKLKTKIIAQAAGITVPELY--GVIHNQAEVKTIHNIVKDHPDFVIKPAQGSGGKGILVITSRKD 99 (317)
T ss_pred CCchhccccccHHHHHHHHHHcCCCCCCEE--EecCchhhHHHHHHHHccCCCEEEEECCCCCccCeEEEEeccc
Confidence 788888899999999999999999999986 555555333333333 56 69999999999999999976533
No 92
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=98.91 E-value=6.9e-09 Score=89.91 Aligned_cols=94 Identities=20% Similarity=0.373 Sum_probs=76.8
Q ss_pred HHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccE
Q 021372 158 AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGM 237 (313)
Q Consensus 158 ~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV 237 (313)
..+.+.+++. ...+|+++++++.+.||+.+++.|+.+ +++|+++ - +.+.+-.+|+||+.|.||.|+
T Consensus 89 y~Ltri~E~~-~~nLG~S~~Ai~v~aDK~lty~aLr~a-V~~p~t~--e----------~~~~~~k~ViKp~dgCgge~i 154 (307)
T COG1821 89 YSLTRIYEEY-VENLGCSPRAIRVAADKRLTYKALRDA-VKQPPTR--E----------WAEEPKKYVIKPADGCGGEGI 154 (307)
T ss_pred HHHHHHHHHH-hHhhCCCHHHHhHhhhHHHHHHHHhhh-ccCCCcc--c----------cccCCceEEecccccCCccee
Confidence 4566777776 667899999999999999999999999 9999985 1 223445789999999999999
Q ss_pred EEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcC
Q 021372 238 RLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADK 286 (313)
Q Consensus 238 ~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~ 286 (313)
.+..+..++ .|+||||+| .+++|. +.++
T Consensus 155 ~~~~~~pd~-------------------~i~qEfIeG-~~lSVS-L~~G 182 (307)
T COG1821 155 LFGRDFPDI-------------------EIAQEFIEG-EHLSVS-LSVG 182 (307)
T ss_pred eccCCCcch-------------------hhHHHhcCC-cceEEE-EecC
Confidence 888775442 588999999 999999 4443
No 93
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=98.86 E-value=3.8e-08 Score=93.24 Aligned_cols=109 Identities=23% Similarity=0.231 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCc-EEEeeccCC----CCccEEEeCCHHHHHHHHHHHHHHHH
Q 021372 184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFP-VMIKATAGG----GGRGMRLAKEPDEFVKLLQQAKSEAA 258 (313)
Q Consensus 184 DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P-~VvKP~~g~----gg~GV~~v~~~~el~~~~~~~~~~~~ 258 (313)
+-+..+++|+++|||+|+++ .+.+.+++.+.++++||| +|+|...-. -+.||.+..|++|+.++++++.....
T Consensus 4 ~E~eak~lL~~yGIpvp~~~--~~~~~~ea~~~a~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~~ll~~~~ 81 (392)
T PRK14046 4 HEYQAKELLASFGVAVPRGA--LAYSPEQAVYRARELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAEDLLGKKL 81 (392)
T ss_pred cHHHHHHHHHHcCCCCCCce--EECCHHHHHHHHHHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHHHHhcchh
Confidence 35678999999999999995 899999999999999995 599974322 33368888999999999999876421
Q ss_pred ---h----cCCCCcEEEeeccCCCcEEEEEEEEcC-CCCEEEEe
Q 021372 259 ---A----AFGNDGVYLEKYVQNPRHIEFQVLADK-YGNVVHFG 294 (313)
Q Consensus 259 ---~----~~~~~~vlvEe~I~G~~e~~v~v~~d~-~G~vv~~~ 294 (313)
. ...-..++||+++++..|+.+.+..|. +|.++.++
T Consensus 82 ~~~~~~~~g~~v~~vlVe~~~~~~~E~ylgi~~D~~~g~~v~~~ 125 (392)
T PRK14046 82 VTHQTGPEGKPVQRVYVETADPIERELYLGFVLDRKSERVRVIA 125 (392)
T ss_pred hhhccCCCCCeeeeEEEEEecCCCcEEEEEEEECCCCCcEEEEE
Confidence 0 011247999999998899999999997 88888774
No 94
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=98.80 E-value=4.6e-08 Score=89.99 Aligned_cols=107 Identities=29% Similarity=0.420 Sum_probs=86.0
Q ss_pred HHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhC-CcEEEeeccCCCCc----cEEEeCCHHHHHHHHHHHHH----
Q 021372 185 KSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELG-FPVMIKATAGGGGR----GMRLAKEPDEFVKLLQQAKS---- 255 (313)
Q Consensus 185 K~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg-~P~VvKP~~g~gg~----GV~~v~~~~el~~~~~~~~~---- 255 (313)
.+..+++|+++|||+|+++ .+.+.+++.+++.++| .|+|+|+.--.||| ||+++.|.+|..++.+.+..
T Consensus 5 EYqaKelf~~~GiPvp~g~--v~~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q 82 (387)
T COG0045 5 EYQAKELFAKYGIPVPPGY--VATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGKNYQ 82 (387)
T ss_pred HHHHHHHHHHcCCCCCCce--eeeCHHHHHHHHHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHHhCcccc
Confidence 4778999999999999996 8999999999999998 89999998655555 59999999999999999876
Q ss_pred HHHhcCCCCcEEEeeccC-CCcEEEEEEEEcCCCCEEEE
Q 021372 256 EAAAAFGNDGVYLEKYVQ-NPRHIEFQVLADKYGNVVHF 293 (313)
Q Consensus 256 ~~~~~~~~~~vlvEe~I~-G~~e~~v~v~~d~~G~vv~~ 293 (313)
.......-..+|||+.++ -.+||-+.++.|...+...+
T Consensus 83 ~~~~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~~~~p~~ 121 (387)
T COG0045 83 TDIKGEPVNKVLVEEAVDIIKKEYYLSIVLDRSSRRPVL 121 (387)
T ss_pred cCcCCceeeEEEEEecCCCccceEEEEEEEEcCCCcEEE
Confidence 211111125799999999 44499999999985444433
No 95
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=98.71 E-value=3.6e-08 Score=84.86 Aligned_cols=103 Identities=27% Similarity=0.417 Sum_probs=74.7
Q ss_pred HHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCc-EEEeeccCCCCc----cEEEeCCHHHHHHHHHHHHHHHHh
Q 021372 185 KSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFP-VMIKATAGGGGR----GMRLAKEPDEFVKLLQQAKSEAAA 259 (313)
Q Consensus 185 K~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P-~VvKP~~g~gg~----GV~~v~~~~el~~~~~~~~~~~~~ 259 (313)
.+..+++|+++|||+|+++ ++.+.+++.++++.+|.+ +|+||.--.||| ||.+++|++|+.++.+++......
T Consensus 4 EyqaK~ll~~~gi~vp~g~--~a~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 4 EYQAKELLRKYGIPVPRGV--VATSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp HHHHHHHHHCTT----SEE--EESSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred HHHHHHHHHHcCCCCCCee--ecCCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 4778999999999999995 899999999999999875 799998666555 489999999999999887643110
Q ss_pred -------cCCCCcEEEeeccCCCcEEEEEEEEcCCCC
Q 021372 260 -------AFGNDGVYLEKYVQNPRHIEFQVLADKYGN 289 (313)
Q Consensus 260 -------~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~ 289 (313)
...-..+||||+++-.+|+-+.++.|...+
T Consensus 82 T~Qtg~~G~~v~~vlvee~v~~~~E~Ylsi~~DR~~~ 118 (202)
T PF08442_consen 82 TKQTGPKGEKVNKVLVEEFVDIKREYYLSITLDRESR 118 (202)
T ss_dssp -TTSTTTEEEE--EEEEE---CCEEEEEEEEEETTTT
T ss_pred eeecCCCCCEeeEEEEEecCccCceEEEEEEeccCCC
Confidence 011246899999999899999999997433
No 96
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=98.63 E-value=4e-07 Score=86.69 Aligned_cols=107 Identities=21% Similarity=0.275 Sum_probs=80.7
Q ss_pred CCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHh---CCcEEEeeccCCCC-----------ccEEEeCCHHHHHH
Q 021372 183 GDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL---GFPVMIKATAGGGG-----------RGMRLAKEPDEFVK 248 (313)
Q Consensus 183 ~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~l---g~P~VvKP~~g~gg-----------~GV~~v~~~~el~~ 248 (313)
...+..+++|+++|||+|++. .+.+.+|+.+.++++ ++|+|+|+.--.|| -||.+.++ +|+.+
T Consensus 30 l~EyqaK~LL~~~GIpvp~~~--va~t~eea~~aa~~l~~~~~pvVvKaqv~~GGRGka~hKs~~~GGV~l~~~-eea~~ 106 (422)
T PLN00124 30 IHEYQGAELMSKYGVNVPKGA--AASSLDEVKKALEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGVHIVKK-DKAEE 106 (422)
T ss_pred CCHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhcccCCcEEEEEEeccCCccccccccccCCeEEECCH-HHHHH
Confidence 457788999999999999984 889999999999998 69999999843333 34666766 99999
Q ss_pred HHHHHHHHHH--h-----cCCCCcEEEeeccCCCcEEEEEEEEcC--CCCEEE
Q 021372 249 LLQQAKSEAA--A-----AFGNDGVYLEKYVQNPRHIEFQVLADK--YGNVVH 292 (313)
Q Consensus 249 ~~~~~~~~~~--~-----~~~~~~vlvEe~I~G~~e~~v~v~~d~--~G~vv~ 292 (313)
+++++..... . ...-..++++|.+....|+-+.+..|+ .|.++.
T Consensus 107 aa~~il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr~~~gpvil 159 (422)
T PLN00124 107 LAGKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDRASAGPLII 159 (422)
T ss_pred HHHHHhccchhhcccCCCCceeceEEEEEeecCCceEEEEEEeccccCCcEEE
Confidence 9998875411 0 011235776666655599999999996 466664
No 97
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.53 E-value=7.1e-07 Score=81.19 Aligned_cols=112 Identities=18% Similarity=0.294 Sum_probs=78.9
Q ss_pred CCHHHHHHhCCHHHHHHHHHHCCCCCCCCCc-------c--cCCCHHHHHHHHHHh-CCcEEEeeccCCCCccEEEeCCH
Q 021372 174 PNPDSIRIMGDKSTARETMKNAGVPTVPGSD-------G--LLQSTEEAVKLADEL-GFPVMIKATAGGGGRGMRLAKEP 243 (313)
Q Consensus 174 ~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~-------~--~~~~~~~~~~~~~~l-g~P~VvKP~~g~gg~GV~~v~~~ 243 (313)
++.+....+.||..+++++.++|||+|+.+. . ...+.+++.+++... ..++|+||..|++|+|+.+++..
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G~~G~Gi~~i~~~ 95 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPANGSGGKGILVIDRR 95 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCCceEEeccceEEecccccCHHHHHHHHHhccCCcEEEEeCCCCCccCEEEEEee
Confidence 6778888999999999999999999999421 0 124667788887664 57999999999999999998655
Q ss_pred H------HHHHHHHHHHHHHHhcCCCCcEEEeeccCC-----------CcEEEEEEEEcCCCCEE
Q 021372 244 D------EFVKLLQQAKSEAAAAFGNDGVYLEKYVQN-----------PRHIEFQVLADKYGNVV 291 (313)
Q Consensus 244 ~------el~~~~~~~~~~~~~~~~~~~vlvEe~I~G-----------~~e~~v~v~~d~~G~vv 291 (313)
+ ........+... ....+|+||+|.- -..++|..+.++ |.+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~-----~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~-~~~~ 154 (285)
T PF14397_consen 96 DGSEINRDISALYAGLESL-----GGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDD-GEVE 154 (285)
T ss_pred cCcccccchhHHHHHHHhc-----CCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeC-CeeE
Confidence 4 122222222111 1128999999974 345667777775 4443
No 98
>PLN02235 ATP citrate (pro-S)-lyase
Probab=98.41 E-value=2.8e-06 Score=80.24 Aligned_cols=106 Identities=15% Similarity=0.275 Sum_probs=84.8
Q ss_pred HHHHHHHHHHC-----CCCCCCCCcccC-CCHHHHHHHHHH---hCCc-EEEeeccCCCCcc----EEEeCCHHHHHHHH
Q 021372 185 KSTARETMKNA-----GVPTVPGSDGLL-QSTEEAVKLADE---LGFP-VMIKATAGGGGRG----MRLAKEPDEFVKLL 250 (313)
Q Consensus 185 K~~~~~~l~~~-----Gip~p~~~~~~~-~~~~~~~~~~~~---lg~P-~VvKP~~g~gg~G----V~~v~~~~el~~~~ 250 (313)
.+..+++|+++ |||+|.+. .+ .+.+++.+++++ ++.| +||||..-.|||| |.+++|++|+.++.
T Consensus 8 EyqaK~ll~~~~~~~~gipvP~~~--v~~~~~ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~s~~Ea~~~a 85 (423)
T PLN02235 8 EYDSKRLLKEHLKRLAGIDLPIRS--AQVTESTDFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLDLAQVATFV 85 (423)
T ss_pred HHHHHHHHHHhhcccCCCCCCCCe--eccCCHHHHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeCCHHHHHHHH
Confidence 46678889988 99999995 55 899999998888 7765 6999987776664 89999999999999
Q ss_pred HHHHHHHH-----hcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372 251 QQAKSEAA-----AAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 293 (313)
Q Consensus 251 ~~~~~~~~-----~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~ 293 (313)
+++..... .. .-..+|||++++-.+||-+.++.|.....+.+
T Consensus 86 ~~~Lg~~l~t~g~~G-~v~~vLVEe~v~i~~E~Ylsi~~DR~~~~ii~ 132 (423)
T PLN02235 86 KERLGKEVEMGGCKG-PITTFIVEPFVPHDQEFYLSIVSDRLGCSISF 132 (423)
T ss_pred HHHhCCceEecCCCc-cEeEEEEEecCCCcceEEEEEEEecCCCEEEE
Confidence 98875431 11 12478999999988999999999986666443
No 99
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=98.35 E-value=1.1e-06 Score=73.84 Aligned_cols=84 Identities=19% Similarity=0.329 Sum_probs=52.6
Q ss_pred CCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCH-HHHHHHHHHHHHHHHhcCCCCcEEEeeccCC--C
Q 021372 199 TVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEP-DEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN--P 275 (313)
Q Consensus 199 ~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~-~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G--~ 275 (313)
+|+|+ +..+.+++.++.++.+. +|+||..|.||+||+++... ..+.+.++.+... +..++++|+|++. .
T Consensus 12 ~P~T~--vs~~~~~i~~f~~~~~~-~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~~~-----~~~~~mvQ~flp~i~~ 83 (173)
T PF02955_consen 12 IPPTL--VSRDKEEIRAFIEEHGD-IVLKPLDGMGGRGVFRISRDDPNLNSILETLTKN-----GERPVMVQPFLPEIKE 83 (173)
T ss_dssp S--EE--EES-HHHHHHHHHHHSS-EEEEESS--TTTT-EEE-TT-TTHHHHHHHHTTT-----TTS-EEEEE--GGGGG
T ss_pred CcCEE--EECCHHHHHHHHHHCCC-EEEEECCCCCCcCEEEEcCCCCCHHHHHHHHHhc-----CCccEEEEeccccccC
Confidence 47774 77789999999999988 99999999999999998764 4455555544322 2357999999997 3
Q ss_pred cEEEEEEEEcCCCCEEEE
Q 021372 276 RHIEFQVLADKYGNVVHF 293 (313)
Q Consensus 276 ~e~~v~v~~d~~G~vv~~ 293 (313)
-|.++-++ +|+.++.
T Consensus 84 GDkRii~~---nG~~~~a 98 (173)
T PF02955_consen 84 GDKRIILF---NGEPSHA 98 (173)
T ss_dssp -EEEEEEE---TTEE-SE
T ss_pred CCEEEEEE---CCEEhHH
Confidence 36777666 3444443
No 100
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=98.24 E-value=1.1e-05 Score=61.14 Aligned_cols=94 Identities=17% Similarity=0.167 Sum_probs=61.9
Q ss_pred cEEEEEcCCHhHHHHHHHHHHcC-C-cEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372 72 EKILVANRGEIAVRVIRTAHEMG-I-PCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (313)
Q Consensus 72 ~~ILIig~g~~a~~v~~al~~~G-~-~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip 149 (313)
+||||+|+|..-..++.++++.. + ++++.- .+.- .......+.+ +..+.+.++++|+++++|.|++
T Consensus 1 MkVLviGsGgREHAia~~l~~s~~v~~v~~aP--GN~G---~~~~~~~~~~-------~~~d~~~l~~~a~~~~idlvvv 68 (100)
T PF02844_consen 1 MKVLVIGSGGREHAIAWKLSQSPSVEEVYVAP--GNPG---TAELGKNVPI-------DITDPEELADFAKENKIDLVVV 68 (100)
T ss_dssp EEEEEEESSHHHHHHHHHHTTCTTEEEEEEEE----TT---GGGTSEEE-S--------TT-HHHHHHHHHHTTESEEEE
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCCCEEEEeC--CCHH---HHhhceecCC-------CCCCHHHHHHHHHHcCCCEEEE
Confidence 58999999988788888887753 2 333332 2221 1112223323 2467899999999999999998
Q ss_pred ccCcCccc---HHHHHHHHHcCCceeCCCHHHHHH
Q 021372 150 GYGFLAEN---AVFVEMCREHGINFIGPNPDSIRI 181 (313)
Q Consensus 150 ~~g~~~e~---~~~~~~l~~~gi~~~g~~~~~i~~ 181 (313)
+. |. .-+.+.|++.|++++||+.++..+
T Consensus 69 GP----E~pL~~Gl~D~l~~~gi~vfGP~k~aA~L 99 (100)
T PF02844_consen 69 GP----EAPLVAGLADALRAAGIPVFGPSKEAARL 99 (100)
T ss_dssp SS----HHHHHTTHHHHHHHTT-CEES--HHHHHH
T ss_pred CC----hHHHHHHHHHHHHHCCCcEECcCHHHHhc
Confidence 76 43 246788999999999999887653
No 101
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=98.11 E-value=4.9e-05 Score=68.34 Aligned_cols=110 Identities=19% Similarity=0.308 Sum_probs=82.4
Q ss_pred HHcCCceeCCCHHHHHHhCCHHHHHHHHHHCC-CC--CCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeC
Q 021372 165 REHGINFIGPNPDSIRIMGDKSTARETMKNAG-VP--TVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAK 241 (313)
Q Consensus 165 ~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~G-ip--~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~ 241 (313)
+..|++++.+ ...||+.+++.|.+.. +. .|+| ....+.+++.+++++.+ -++|||..|+.|+||.++.
T Consensus 5 ~~~~i~~~n~------~~~~Kw~v~~~L~~~~~l~~~LP~T--~~~~~~~~l~~~L~~y~-~vylKP~~Gs~G~gI~ri~ 75 (262)
T PF14398_consen 5 KQKGIPFFNP------GFFDKWEVYKALSRDPELRPYLPET--ELLTSFEDLREMLNKYK-SVYLKPDNGSKGKGIIRIE 75 (262)
T ss_pred hcCCCEEeCC------CCCCHHHHHHHHHcCCcchhhCCCc--eEcCCHHHHHHHHHHCC-EEEEEeCCCCCCccEEEEE
Confidence 4678999843 4689999999999854 34 6787 37888899999988876 6999999999999987652
Q ss_pred ----------------------CHHHHHHHHHHHHHHHHhcCCCCcEEEeeccC-----C-CcEEEEEEEEcCCCCE
Q 021372 242 ----------------------EPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQ-----N-PRHIEFQVLADKYGNV 290 (313)
Q Consensus 242 ----------------------~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~-----G-~~e~~v~v~~d~~G~v 290 (313)
+.+++...+.... ....+|||+.|+ | +-++.|.+-.+++|+-
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-------~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G~W 145 (262)
T PF14398_consen 76 KKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKELL-------GKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSGKW 145 (262)
T ss_pred EeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHhc-------CCCcEEEeCCccccccCCCeEEEEEEEEECCCCCE
Confidence 3455555555432 346999999997 3 4566677777777744
No 102
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=98.06 E-value=1.7e-05 Score=61.69 Aligned_cols=121 Identities=15% Similarity=0.213 Sum_probs=72.0
Q ss_pred EEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC-cchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccC
Q 021372 74 ILVANRGEIAVRVIRTAHEMGIPCVAVYSTID-KDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYG 152 (313)
Q Consensus 74 ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~-~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g 152 (313)
|..+|+. +++++++-|++.|++++++..... ..-....++|+.+.++.- .+..+ +.+.+..++ -++|+..++
T Consensus 1 I~tlaSH-SALqIl~GAk~EGFrT~~ic~~~r~~~Y~~f~~iDe~i~~d~f---~di~~-~~~q~~L~~--~N~I~VPhg 73 (124)
T PF06849_consen 1 IATLASH-SALQILDGAKDEGFRTIAICQKGREKFYRRFPFIDEVIVLDSF---SDILS-EEVQEKLRE--MNAIFVPHG 73 (124)
T ss_dssp EEEESST-THHHHHHHHHHTT--EEEEEETTCHHHHHTTTT-SEEEEESSC---GHCCS-HHHHHHHHH--TTEEE--BT
T ss_pred Ceeeech-HHHHHhhhHHHcCCcEEEEECCCCcchhhhcCcCcEEEEeCCH---HHHHh-HHHHHHHHH--CCeEEecCC
Confidence 3455544 589999999999999998875432 223334478998877411 11111 244444433 467777777
Q ss_pred cCcccHHHHHHHHH-cCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCC
Q 021372 153 FLAENAVFVEMCRE-HGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGS 203 (313)
Q Consensus 153 ~~~e~~~~~~~l~~-~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~ 203 (313)
++.+..-. +.++. ..+|++| +...++.-.|...-+++|+++|||.|+.+
T Consensus 74 Sfv~Y~G~-d~ie~~~~vP~FG-NR~lLrwEseR~~~~~lL~~AgI~~P~~~ 123 (124)
T PF06849_consen 74 SFVAYVGY-DRIENEFKVPIFG-NRNLLRWESERDKERNLLEKAGIPMPRKF 123 (124)
T ss_dssp THHHHH-H-HHHHHT-SS-EES--CCGGHCCCSHHHHHHHHHHTT-BB--BE
T ss_pred CeeEeecH-HHHhhcCCCCeec-ChHHHHhhhhhhhHHHHHHHcCCCCCccC
Confidence 66555433 33445 8999997 56777777799999999999999999853
No 103
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=97.72 E-value=8.5e-05 Score=67.82 Aligned_cols=102 Identities=18% Similarity=0.285 Sum_probs=69.1
Q ss_pred CCceeCCCHHHHHHhCCHHHHHHHHHHC-------CCCCCCCCcccCC-CHHHHHHHHH--HhCCcEEEeeccCC---CC
Q 021372 168 GINFIGPNPDSIRIMGDKSTARETMKNA-------GVPTVPGSDGLLQ-STEEAVKLAD--ELGFPVMIKATAGG---GG 234 (313)
Q Consensus 168 gi~~~g~~~~~i~~~~DK~~~~~~l~~~-------Gip~p~~~~~~~~-~~~~~~~~~~--~lg~P~VvKP~~g~---gg 234 (313)
.+.++ .+.++++.+.|+..+.+++++. .+.+|++. .+. +.+++.+..+ .+.||+|+||.... .+
T Consensus 78 ~v~vi-Dp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gsa~S 154 (307)
T PF05770_consen 78 EVVVI-DPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFV--VINSDAESLPELLKEAGLKFPLICKPLVACGSADS 154 (307)
T ss_dssp TSEEE-T-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EE--EESSSHCCHHHHHHCTTS-SSEEEEESB-SSTSCC
T ss_pred CeEEE-cCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceE--EEcCCHHHHHHHHHHCCCcccEEeeehhhcCCccc
Confidence 45555 7889999999999999988875 67888874 333 4445554443 56799999998755 45
Q ss_pred ccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCC-CcEEEEEEEEc
Q 021372 235 RGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN-PRHIEFQVLAD 285 (313)
Q Consensus 235 ~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G-~~e~~v~v~~d 285 (313)
..+.++.+.+.|.+. ..++++||||+= +.-|-|.+++|
T Consensus 155 H~Maivf~~~gL~~L-------------~~P~VlQeFVNHggvLfKVyVvGd 193 (307)
T PF05770_consen 155 HKMAIVFNEEGLKDL-------------KPPCVLQEFVNHGGVLFKVYVVGD 193 (307)
T ss_dssp CEEEEE-SGGGGTT---------------SSEEEEE----TTEEEEEEEETT
T ss_pred eEEEEEECHHHHhhc-------------CCCEEEEEeecCCCEEEEEEEecC
Confidence 678899999998762 268999999973 57788888766
No 104
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=97.67 E-value=0.00049 Score=65.89 Aligned_cols=173 Identities=18% Similarity=0.213 Sum_probs=99.1
Q ss_pred ccEEEEEcCCHh-----HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCC
Q 021372 71 QEKILVANRGEI-----AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCT 145 (313)
Q Consensus 71 ~~~ILIig~g~~-----a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id 145 (313)
..+|.|+.--.. =..+.+.+.++|+++++++... ..+.+...+.+ -.-++.+-+.+-...
T Consensus 185 ~P~IAIvDf~~~~~~~Ef~~f~~~f~~~G~~~vI~d~~~------L~y~~g~L~~~-------~~~ID~VyRR~Vt~e-- 249 (445)
T PF14403_consen 185 KPNIAIVDFLEYPTLSEFEVFQRLFEEHGYDCVICDPRD------LEYRDGRLYAG-------GRPIDAVYRRFVTSE-- 249 (445)
T ss_pred CCcEEEEecccCCccchHHHHHHHHHHcCCceEecChHH------ceecCCEEEEC-------CEeeehhhHhhhhHH--
Confidence 456778772222 2456688889999999985432 23344444332 111233333221110
Q ss_pred EEeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCC-------------CCCCCcccCCC---
Q 021372 146 MLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVP-------------TVPGSDGLLQS--- 209 (313)
Q Consensus 146 ~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip-------------~p~~~~~~~~~--- 209 (313)
+++ ...+...+.++...-.+.++| +-....++||..+.=+-.+..-. +|-| ..++.
T Consensus 250 -~l~---~~d~~~~li~Ay~~~av~~vg--sfrs~l~hnK~iFaiL~d~~~~~~Lt~ee~~~I~~HvP~T--~~l~~~~~ 321 (445)
T PF14403_consen 250 -LLE---RYDEVQPLIQAYRDGAVCMVG--SFRSQLLHNKIIFAILHDERTTAFLTAEERAFIRRHVPWT--RLLTAGRT 321 (445)
T ss_pred -hhh---ccccchHHHHHHhcCCeEEec--chhhhhhhhhHHHHHhcChhhcccCCHHHHHHHHHhCCce--EEEcCccc
Confidence 011 111334566666666666663 34456677777664332222111 2333 23333
Q ss_pred -----HHHHHHHHHHhCCcEEEeeccCCCCccEEE--eCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCC
Q 021372 210 -----TEEAVKLADELGFPVMIKATAGGGGRGMRL--AKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN 274 (313)
Q Consensus 210 -----~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~--v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G 274 (313)
.-++.+++..-.--+|+||..+.||+||++ =.++++++++++++.. .++|+|||++-
T Consensus 322 ~~~g~~~dL~~~~~a~r~~lVLKP~D~Ygg~GV~~G~e~~~eeW~~~l~~a~~--------~~yilQe~v~~ 385 (445)
T PF14403_consen 322 TYQGEDVDLVEFAIANRDRLVLKPNDEYGGKGVYIGWETSPEEWEAALEEAAR--------EPYILQEYVRP 385 (445)
T ss_pred cccccchhHHHHHHhchhcEEeccccccCCCCeEECCcCCHHHHHHHHHHHhc--------CCcEEEEEecC
Confidence 334444444444478999999999999998 3578899998888653 69999999987
No 105
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=97.19 E-value=0.0037 Score=55.42 Aligned_cols=111 Identities=15% Similarity=0.169 Sum_probs=70.9
Q ss_pred HHHHHhCCHHHHHHHHHHCC--CCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHH
Q 021372 177 DSIRIMGDKSTARETMKNAG--VPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAK 254 (313)
Q Consensus 177 ~~i~~~~DK~~~~~~l~~~G--ip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~ 254 (313)
.....+.||+..|+.+++.+ ...||.+ ...++.+++. ...+.-++||||..|+|+..|....+..+...+...+.
T Consensus 13 ~~~~~~~DK~~VR~yv~~~~g~~~l~pll-~v~~~~~~i~--~~~Lp~~fViK~nhgsg~~~i~~dk~~~d~~~~~~~~~ 89 (239)
T PF14305_consen 13 PLFTKLADKYAVREYVEEKIGEEYLPPLL-GVYDNPDDID--FDSLPDKFVIKPNHGSGSNIIVRDKSKLDIEEAKKKLN 89 (239)
T ss_pred ccceecchHHHHHHHHHHhCCCceECcee-ecCCChhhhh--hhcCCCCEEEEEecCCCcEEEEeCCcccCHHHHHHHHH
Confidence 34567899999999999986 3445554 4667777663 24566789999999999888877654333333332222
Q ss_pred HHHHhcCC-----------CCcEEEeeccCC--C---cEEEEEEEEcCCCCEEEE
Q 021372 255 SEAAAAFG-----------NDGVYLEKYVQN--P---RHIEFQVLADKYGNVVHF 293 (313)
Q Consensus 255 ~~~~~~~~-----------~~~vlvEe~I~G--~---~e~~v~v~~d~~G~vv~~ 293 (313)
......+. ...+++|++|.. + .+|-+-++ +|++..+
T Consensus 90 ~wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF---~G~~~~i 141 (239)
T PF14305_consen 90 RWLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFFCF---NGKPKFI 141 (239)
T ss_pred HHhhhccccccccccCcCCCceEEEEeccccCCCCCcceEEEEEE---CCEEEEE
Confidence 11100101 247999999976 2 57887777 4454444
No 106
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.98 E-value=0.0055 Score=57.85 Aligned_cols=118 Identities=16% Similarity=0.173 Sum_probs=80.8
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcC-CcEEEEecCCCcchhhhhhc---CceEEccCCCCCCCcCCHHHHHHHHHhcCCCE
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMG-IPCVAVYSTIDKDALHVKLA---DESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G-~~vi~v~~~~~~~~~~~~~a---d~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~ 146 (313)
|++|||+|+|.+|..++..|.+.| .+|++.+.+.+......... -+...+| -.+.+++.+++++. |+
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD-------~~d~~al~~li~~~--d~ 71 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVD-------AADVDALVALIKDF--DL 71 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEec-------ccChHHHHHHHhcC--CE
Confidence 578999999999999999998988 89999876654433322222 2233343 45678888888776 88
Q ss_pred EeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCC
Q 021372 147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPG 202 (313)
Q Consensus 147 vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~ 202 (313)
|+...... -+..+.+++.+.|++++-. ...-.+.+...+.++++|+-....
T Consensus 72 VIn~~p~~-~~~~i~ka~i~~gv~yvDt----s~~~~~~~~~~~~a~~Agit~v~~ 122 (389)
T COG1748 72 VINAAPPF-VDLTILKACIKTGVDYVDT----SYYEEPPWKLDEEAKKAGITAVLG 122 (389)
T ss_pred EEEeCCch-hhHHHHHHHHHhCCCEEEc----ccCCchhhhhhHHHHHcCeEEEcc
Confidence 88654222 2346777888999988621 111222477889999999776655
No 107
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=96.81 E-value=0.017 Score=52.75 Aligned_cols=94 Identities=24% Similarity=0.324 Sum_probs=74.1
Q ss_pred CCCCCcccCCCHHHHHHHHHHh--CCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCc
Q 021372 199 TVPGSDGLLQSTEEAVKLADEL--GFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPR 276 (313)
Q Consensus 199 ~p~~~~~~~~~~~~~~~~~~~l--g~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~ 276 (313)
+-+.| .+.+.+|+..++..+ +.|+=+||..+.||+|..++.+.++|+.++..+-..... ...+++|+-+....
T Consensus 114 vL~G~--tvFs~~DA~~A~~~LL~~G~VRlKp~~a~gG~GQ~vv~~~~~Ld~~L~~~~~~~l~---~~GlVLE~~L~~~~ 188 (355)
T PF11379_consen 114 VLPGY--TVFSREDARRAARRLLRDGPVRLKPVHATGGRGQQVVADADELDAALAALDDAELA---RHGLVLEEDLEEVV 188 (355)
T ss_pred ccCCc--cccCHHHHHHHHHHHhccCCeeeccCcccCCCCceEecCHHHHHHHHHcCCHHHHH---hCCEEEecccCCCc
Confidence 34555 788899998887765 579999999999999999999999999999876443221 36799999999988
Q ss_pred EEEEEEEEcCCCCEEEEeeccc
Q 021372 277 HIEFQVLADKYGNVVHFGERDC 298 (313)
Q Consensus 277 e~~v~v~~d~~G~vv~~~~r~~ 298 (313)
-|||.-+.- .|.++.+.+..+
T Consensus 189 T~SVGqv~v-~g~~~SY~GtQ~ 209 (355)
T PF11379_consen 189 TYSVGQVRV-AGLVASYYGTQR 209 (355)
T ss_pred eeeEEEEEE-CCEEEEEeeEee
Confidence 999988776 346666655443
No 108
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=96.66 E-value=0.02 Score=51.03 Aligned_cols=94 Identities=17% Similarity=0.204 Sum_probs=63.7
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip 149 (313)
|+++|||+||..-|+.+++.|.+.|+++++...+.... .... ...+..+ .+.+.+.+.++++++++++|+=
T Consensus 1 ~~~~IlvlgGT~egr~la~~L~~~g~~v~~Svat~~g~--~~~~-~~~v~~G------~l~~~~~l~~~l~~~~i~~VID 71 (248)
T PRK08057 1 MMPRILLLGGTSEARALARALAAAGVDIVLSLAGRTGG--PADL-PGPVRVG------GFGGAEGLAAYLREEGIDLVID 71 (248)
T ss_pred CCceEEEEechHHHHHHHHHHHhCCCeEEEEEccCCCC--cccC-CceEEEC------CCCCHHHHHHHHHHCCCCEEEE
Confidence 56789999999999999999999999887654333222 1111 2222233 2337899999999999999984
Q ss_pred c-cCcCccc-HHHHHHHHHcCCcee
Q 021372 150 G-YGFLAEN-AVFVEMCREHGINFI 172 (313)
Q Consensus 150 ~-~g~~~e~-~~~~~~l~~~gi~~~ 172 (313)
. +.|-.+- ....+.+.+.|++++
T Consensus 72 ATHPfA~~is~~a~~ac~~~~ipyi 96 (248)
T PRK08057 72 ATHPYAAQISANAAAACRALGIPYL 96 (248)
T ss_pred CCCccHHHHHHHHHHHHHHhCCcEE
Confidence 3 2222222 345677888888875
No 109
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=96.59 E-value=0.019 Score=51.35 Aligned_cols=94 Identities=15% Similarity=0.124 Sum_probs=60.5
Q ss_pred cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeecc
Q 021372 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (313)
Q Consensus 72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~ 151 (313)
++|||+|+..-|+.+++.|.+.|++|++...+..............+..+ -.+.+.+.++++++++|+|+-..
T Consensus 1 m~ILvlGGT~egr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~~~v~~g-------~l~~~~l~~~l~~~~i~~VIDAt 73 (256)
T TIGR00715 1 MTVLLMGGTVDSRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVHTG-------ALDPQELREFLKRHSIDILVDAT 73 (256)
T ss_pred CeEEEEechHHHHHHHHHHHhCCCeEEEEEccCCccccccccCCceEEEC-------CCCHHHHHHHHHhcCCCEEEEcC
Confidence 47999998445999999999999999887555432222121111223233 24567788999999999988432
Q ss_pred CcCc-cc-HHHHHHHHHcCCcee
Q 021372 152 GFLA-EN-AVFVEMCREHGINFI 172 (313)
Q Consensus 152 g~~~-e~-~~~~~~l~~~gi~~~ 172 (313)
-.+. +. ....+.+.+.|++++
T Consensus 74 HPfA~~is~~a~~a~~~~~ipyl 96 (256)
T TIGR00715 74 HPFAAQITTNATAVCKELGIPYV 96 (256)
T ss_pred CHHHHHHHHHHHHHHHHhCCcEE
Confidence 1111 11 245677788888875
No 110
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=96.48 E-value=0.038 Score=48.77 Aligned_cols=123 Identities=15% Similarity=0.099 Sum_probs=78.8
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~ 150 (313)
+++|||+|+..-++.+++.|...+..+++.........+....+...+ . .+...+.+.++.+++++|.++-.
T Consensus 2 ~~~ilvlGGT~Dar~la~~L~~~~~~~~~ss~t~~g~~l~~~~~~~~~-~-------G~l~~e~l~~~l~e~~i~llIDA 73 (257)
T COG2099 2 MMRILLLGGTSDARALAKKLAAAPVDIILSSLTGYGAKLAEQIGPVRV-G-------GFLGAEGLAAFLREEGIDLLIDA 73 (257)
T ss_pred CceEEEEeccHHHHHHHHHhhccCccEEEEEcccccccchhccCCeee-c-------CcCCHHHHHHHHHHcCCCEEEEC
Confidence 578999999999999999999999655555444333333333444222 3 36889999999999999999843
Q ss_pred -cCcCccc-HHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCC--CCCCCcccCCCHHHHHHHHHHhC
Q 021372 151 -YGFLAEN-AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVP--TVPGSDGLLQSTEEAVKLADELG 221 (313)
Q Consensus 151 -~g~~~e~-~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip--~p~~~~~~~~~~~~~~~~~~~lg 221 (313)
+.+-.+- ....+++++.|++++- +++-+.. -+++ ..+.|.+++.+.+.+.+
T Consensus 74 THPyAa~iS~Na~~aake~gipy~r------------------~eRP~~~~~gd~~--~~V~d~~ea~~~~~~~~ 128 (257)
T COG2099 74 THPYAARISQNAARAAKETGIPYLR------------------LERPPWAPNGDNW--IEVADIEEAAEAAKQLG 128 (257)
T ss_pred CChHHHHHHHHHHHHHHHhCCcEEE------------------EECCccccCCCce--EEecCHHHHHHHHhccC
Confidence 2111111 2345667777887751 1111111 1333 37788888888777765
No 111
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=96.44 E-value=0.026 Score=44.14 Aligned_cols=98 Identities=27% Similarity=0.309 Sum_probs=57.1
Q ss_pred cEEEEEcCCH----hHHHHHHHHHHcCCcEEEEecCCCcch---hhhhhc------CceEEccCCCCCCCcCCHHHHHHH
Q 021372 72 EKILVANRGE----IAVRVIRTAHEMGIPCVAVYSTIDKDA---LHVKLA------DESVCIGEAPSSQSYLLIPNVLSA 138 (313)
Q Consensus 72 ~~ILIig~g~----~a~~v~~al~~~G~~vi~v~~~~~~~~---~~~~~a------d~~~~v~~~~~~~~~~~~~~l~~~ 138 (313)
|+|.|+|.+. .|..+++.+++.|++++.+++...... .+..+. |-.+.+- .......+++.
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~------~~~~~~~~v~~ 74 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCV------PPDKVPEIVDE 74 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-------HHHHHHHHHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEc------CHHHHHHHHHH
Confidence 5799999544 599999999999999999976553221 111111 1111110 01234556666
Q ss_pred HHhcCCCEEeeccCcCcccHHHHHHHHHcCCceeCCCHH
Q 021372 139 AISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPD 177 (313)
Q Consensus 139 ~~~~~id~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~ 177 (313)
+.+.++..++...+ .+...+.+.+++.|++++||+--
T Consensus 75 ~~~~g~~~v~~~~g--~~~~~~~~~a~~~gi~vigp~C~ 111 (116)
T PF13380_consen 75 AAALGVKAVWLQPG--AESEELIEAAREAGIRVIGPNCL 111 (116)
T ss_dssp HHHHT-SEEEE-TT--S--HHHHHHHHHTT-EEEESS-H
T ss_pred HHHcCCCEEEEEcc--hHHHHHHHHHHHcCCEEEeCCcc
Confidence 66778888876654 34567888888999999987643
No 112
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=96.40 E-value=0.019 Score=51.94 Aligned_cols=71 Identities=13% Similarity=0.016 Sum_probs=52.8
Q ss_pred cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhc-CceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLA-DESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (313)
Q Consensus 72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~a-d~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip 149 (313)
++|||+| +|.+|-+.+..|.+.|++|+++|.-.+......... .+++.- +..|.+.|.++..++++|+|+-
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~~~~f~~g-------Di~D~~~L~~vf~~~~idaViH 73 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKLQFKFYEG-------DLLDRALLTAVFEENKIDAVVH 73 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhccCceEEe-------ccccHHHHHHHHHhcCCCEEEE
Confidence 4799999 788999999999999999999986544333222222 234422 3567888999999999999984
No 113
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.38 E-value=0.042 Score=50.58 Aligned_cols=118 Identities=19% Similarity=0.259 Sum_probs=67.3
Q ss_pred EEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeecc
Q 021372 73 KILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (313)
Q Consensus 73 ~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~ 151 (313)
+|||+| .|.+|.++++.|.+.|++|+++..+............+.+.. +..+.+.+.++++ ++|+|+-..
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~-------Dl~d~~~l~~al~--g~d~Vi~~~ 72 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYG-------DLSLPETLPPSFK--GVTAIIDAS 72 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEEC-------CCCCHHHHHHHHC--CCCEEEECC
Confidence 799999 688999999999999999998865432211000111122221 2345556666553 588887542
Q ss_pred CcCcc--------c----HHHHHHHHHcCCc-eeCCCH---H---HHHHhCCHHHHHHHHHHCCCCC
Q 021372 152 GFLAE--------N----AVFVEMCREHGIN-FIGPNP---D---SIRIMGDKSTARETMKNAGVPT 199 (313)
Q Consensus 152 g~~~e--------~----~~~~~~l~~~gi~-~~g~~~---~---~i~~~~DK~~~~~~l~~~Gip~ 199 (313)
+.... + ..+.+++.+.|+. ++..+. + .......|..+.+.+++.|++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~~~~~~~~~~~~~K~~~e~~l~~~~l~~ 139 (317)
T CHL00194 73 TSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILNAEQYPYIPLMKLKSDIEQKLKKSGIPY 139 (317)
T ss_pred CCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccccccccCCChHHHHHHHHHHHHHHcCCCe
Confidence 21111 1 2345666677763 221111 0 1122345778888888888765
No 114
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.21 E-value=0.026 Score=52.30 Aligned_cols=158 Identities=19% Similarity=0.127 Sum_probs=89.8
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip 149 (313)
.++|+|+|.|.+|...++-++.+|.+|++++...+......++ +|..+... +....+.+.+ . +|+++-
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~------~~~~~~~~~~----~-~d~ii~ 235 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSS------DSDALEAVKE----I-ADAIID 235 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcC------CchhhHHhHh----h-CcEEEE
Confidence 5789999999999999999999999999999888877777787 55554210 1111222222 2 899997
Q ss_pred ccCcCcccHHHHHHHHHcCCc-eeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEee
Q 021372 150 GYGFLAENAVFVEMCREHGIN-FIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKA 228 (313)
Q Consensus 150 ~~g~~~e~~~~~~~l~~~gi~-~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP 228 (313)
+.+ ........+.+...|.- +.|... ......-..+.-++++ +.+.-+......+.+++.+++.+-+ |||
T Consensus 236 tv~-~~~~~~~l~~l~~~G~~v~vG~~~--~~~~~~~~~~~li~~~--~~i~GS~~g~~~d~~e~l~f~~~g~----Ikp 306 (339)
T COG1064 236 TVG-PATLEPSLKALRRGGTLVLVGLPG--GGPIPLLPAFLLILKE--ISIVGSLVGTRADLEEALDFAAEGK----IKP 306 (339)
T ss_pred CCC-hhhHHHHHHHHhcCCEEEEECCCC--CcccCCCCHHHhhhcC--eEEEEEecCCHHHHHHHHHHHHhCC----cee
Confidence 654 22234556667666643 344332 0001111122223333 3332221122234445555555544 444
Q ss_pred ccCCCCccEEEeCCHHHHHHHHHHHHH
Q 021372 229 TAGGGGRGMRLAKEPDEFVKLLQQAKS 255 (313)
Q Consensus 229 ~~g~gg~GV~~v~~~~el~~~~~~~~~ 255 (313)
... .....+|+.++++++.+
T Consensus 307 ~i~-------e~~~l~~in~A~~~m~~ 326 (339)
T COG1064 307 EIL-------ETIPLDEINEAYERMEK 326 (339)
T ss_pred eEE-------eeECHHHHHHHHHHHHc
Confidence 321 34567778888887754
No 115
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.17 E-value=0.021 Score=50.12 Aligned_cols=135 Identities=16% Similarity=0.156 Sum_probs=77.4
Q ss_pred cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhh--hcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK--LADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (313)
Q Consensus 72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~--~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip 149 (313)
|+++|+|.|..|+.+++.|.+.|+.|++++.++........ +....+..+ -.+.+.|.++ --.+.|+++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd-------~t~~~~L~~a-gi~~aD~vva 72 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGD-------ATDEDVLEEA-GIDDADAVVA 72 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEec-------CCCHHHHHhc-CCCcCCEEEE
Confidence 57999999999999999999999999999877665443222 333334222 2334444443 3356899887
Q ss_pred ccCcCcccHHHHHHH-HHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHH-HHHHHHHhCCcEEEe
Q 021372 150 GYGFLAENAVFVEMC-REHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEE-AVKLADELGFPVMIK 227 (313)
Q Consensus 150 ~~g~~~e~~~~~~~l-~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~-~~~~~~~lg~P~VvK 227 (313)
..+....+..+..+. +..|++-. +..+.|... .+.+++.|+.. .+..... ....++.+.+|-++-
T Consensus 73 ~t~~d~~N~i~~~la~~~~gv~~v------iar~~~~~~-~~~~~~~g~~~------ii~Pe~~~~~~l~~~i~~p~~~~ 139 (225)
T COG0569 73 ATGNDEVNSVLALLALKEFGVPRV------IARARNPEH-EKVLEKLGADV------IISPEKLAAKRLARLIVTPGALD 139 (225)
T ss_pred eeCCCHHHHHHHHHHHHhcCCCcE------EEEecCHHH-HHHHHHcCCcE------EECHHHHHHHHHHHHhcCCChhe
Confidence 654332333333333 23455443 345555544 45666777332 2222222 334445566675433
No 116
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.14 E-value=0.018 Score=57.53 Aligned_cols=116 Identities=14% Similarity=0.078 Sum_probs=67.6
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip 149 (313)
+..+++|+|.|..|+.+++.|++.|+++++++.|++........ +.....+ |..+ +++++.+.-.+.|+++.
T Consensus 416 ~~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-g~~~i~G------D~~~-~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 416 ICNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-GIRAVLG------NAAN-EEIMQLAHLDCARWLLL 487 (558)
T ss_pred cCCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-CCeEEEc------CCCC-HHHHHhcCccccCEEEE
Confidence 46889999999999999999999999999998776544333332 3333232 1233 34444455557887776
Q ss_pred ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCC
Q 021372 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPT 199 (313)
Q Consensus 150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~ 199 (313)
..+...++........+.. ++...+..+.|.. ..+.+++.|++.
T Consensus 488 ~~~~~~~~~~iv~~~~~~~-----~~~~iiar~~~~~-~~~~l~~~Gad~ 531 (558)
T PRK10669 488 TIPNGYEAGEIVASAREKR-----PDIEIIARAHYDD-EVAYITERGANQ 531 (558)
T ss_pred EcCChHHHHHHHHHHHHHC-----CCCeEEEEECCHH-HHHHHHHcCCCE
Confidence 5432222222222222221 2223333455554 445567888664
No 117
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=96.05 E-value=0.015 Score=52.98 Aligned_cols=66 Identities=18% Similarity=0.378 Sum_probs=32.5
Q ss_pred cEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCC-------CcEEEEEEEEcCCCCEEEEee
Q 021372 223 PVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN-------PRHIEFQVLADKYGNVVHFGE 295 (313)
Q Consensus 223 P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G-------~~e~~v~v~~d~~G~vv~~~~ 295 (313)
-+|+||..++.|+|+.++++.+++.+. .......++||+||+- .-++++-++...--....+.-
T Consensus 67 ~wI~KP~~~~rG~GI~l~~~~~~i~~~---------~~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlvts~~pl~vy~y 137 (292)
T PF03133_consen 67 LWIVKPSNGSRGRGIKLFNNLEQILRF---------SKNKNQPYVVQKYIENPLLIDGRKFDLRVYVLVTSLNPLRVYLY 137 (292)
T ss_dssp -EEEEES-------EEEES-HHHHHCC---------HCCTTS-EEEEE--SSB--BTTB-EEEEEEEEE-T--T--EEEE
T ss_pred EEEEeccccCCCCCceecCCHHHHHHH---------hhhhhhhhhhhhccCCCeEEeeeeEEEEEEEEEeeccceeeeec
Confidence 489999999999999999999888754 0113478999999973 346666666654324444433
Q ss_pred cc
Q 021372 296 RD 297 (313)
Q Consensus 296 r~ 297 (313)
++
T Consensus 138 ~~ 139 (292)
T PF03133_consen 138 KE 139 (292)
T ss_dssp S-
T ss_pred cC
Confidence 33
No 118
>PLN00016 RNA-binding protein; Provisional
Probab=96.05 E-value=0.052 Score=51.28 Aligned_cols=123 Identities=11% Similarity=0.126 Sum_probs=69.3
Q ss_pred ccccccEEEEE----c-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhh-----h---hhc---CceEEccCCCCCCCcC
Q 021372 67 VTCRQEKILVA----N-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-----V---KLA---DESVCIGEAPSSQSYL 130 (313)
Q Consensus 67 ~~~~~~~ILIi----g-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~-----~---~~a---d~~~~v~~~~~~~~~~ 130 (313)
...|+++|||+ | .|.+|..+++.|.+.|++|++++......... . .+. -+.+ ..
T Consensus 48 ~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v----------~~ 117 (378)
T PLN00016 48 AAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTV----------WG 117 (378)
T ss_pred cccccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEE----------Ee
Confidence 34456889999 7 57789999999999999999987554321100 0 000 1111 12
Q ss_pred CHHHHHHHHHhcCCCEEeeccCcCcc-cHHHHHHHHHcCCc-eeCCCHHHHHH---------------hCCHHHHHHHHH
Q 021372 131 LIPNVLSAAISRGCTMLHPGYGFLAE-NAVFVEMCREHGIN-FIGPNPDSIRI---------------MGDKSTARETMK 193 (313)
Q Consensus 131 ~~~~l~~~~~~~~id~vip~~g~~~e-~~~~~~~l~~~gi~-~~g~~~~~i~~---------------~~DK~~~~~~l~ 193 (313)
|+..+.++....++|+|+-..+...+ ...+.+++.+.|+. ++..+...+.. ...|....++++
T Consensus 118 D~~d~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~p~~E~~~~~p~~sK~~~E~~l~ 197 (378)
T PLN00016 118 DPADVKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSSAGVYKKSDEPPHVEGDAVKPKAGHLEVEAYLQ 197 (378)
T ss_pred cHHHHHhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEccHhhcCCCCCCCCCCCCcCCCcchHHHHHHHHH
Confidence 33344444444678988854331111 13455666667763 33212111100 014777778888
Q ss_pred HCCCCC
Q 021372 194 NAGVPT 199 (313)
Q Consensus 194 ~~Gip~ 199 (313)
+.|+++
T Consensus 198 ~~~l~~ 203 (378)
T PLN00016 198 KLGVNW 203 (378)
T ss_pred HcCCCe
Confidence 888764
No 119
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.96 E-value=0.12 Score=45.18 Aligned_cols=117 Identities=18% Similarity=0.251 Sum_probs=76.7
Q ss_pred EEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchh-hhh-hcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372 74 ILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL-HVK-LADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (313)
Q Consensus 74 ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~-~~~-~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~ 150 (313)
|+|+| .|.+|..++++|.+.|++|.++..+...... ... ...+.+.. ++.+.+.|.++.+ ++|.|+..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~-------d~~~~~~l~~al~--g~d~v~~~ 71 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEA-------DYDDPESLVAALK--GVDAVFSV 71 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES--------TT-HHHHHHHHT--TCSEEEEE
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeec-------ccCCHHHHHHHHc--CCceEEee
Confidence 78999 5889999999999999999999766532221 111 12233322 3667888888774 79988876
Q ss_pred cCcCccc-----HHHHHHHHHcCCceeC-----CCH-------HHHHHhCCHHHHHHHHHHCCCCC
Q 021372 151 YGFLAEN-----AVFVEMCREHGINFIG-----PNP-------DSIRIMGDKSTARETMKNAGVPT 199 (313)
Q Consensus 151 ~g~~~e~-----~~~~~~l~~~gi~~~g-----~~~-------~~i~~~~DK~~~~~~l~~~Gip~ 199 (313)
.+...+. ..+.+++.+.|++.+- ... ........|....+.+++.|++.
T Consensus 72 ~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~~~~~~~~p~~~~~~~k~~ie~~l~~~~i~~ 137 (233)
T PF05368_consen 72 TPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGADYDESSGSEPEIPHFDQKAEIEEYLRESGIPY 137 (233)
T ss_dssp SSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESSGTTTTTTSTTHHHHHHHHHHHHHHHHHCTSEB
T ss_pred cCcchhhhhhhhhhHHHhhhccccceEEEEEecccccccccccccchhhhhhhhhhhhhhhccccc
Confidence 5433121 3466777777876542 111 13455678889999999998775
No 120
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.84 E-value=0.015 Score=58.46 Aligned_cols=115 Identities=16% Similarity=0.172 Sum_probs=67.5
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~ 150 (313)
..+|+|+|.|..|+.+++.|++.|+++++++.|++............+ .++ ..+ ..+++.+.-.+.|+++..
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~-~GD------at~-~~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVY-YGD------ATQ-LELLRAAGAEKAEAIVIT 471 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEE-Eee------CCC-HHHHHhcCCccCCEEEEE
Confidence 578999999999999999999999999999888765544333322333 331 122 345555555568888876
Q ss_pred cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCC
Q 021372 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPT 199 (313)
Q Consensus 151 ~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~ 199 (313)
.+...++.......++.. |+...+..++|.... +.|++.|...
T Consensus 472 ~~d~~~n~~i~~~~r~~~-----p~~~IiaRa~~~~~~-~~L~~~Ga~~ 514 (601)
T PRK03659 472 CNEPEDTMKIVELCQQHF-----PHLHILARARGRVEA-HELLQAGVTQ 514 (601)
T ss_pred eCCHHHHHHHHHHHHHHC-----CCCeEEEEeCCHHHH-HHHHhCCCCE
Confidence 542222223333333321 233333445555443 3445556553
No 121
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.79 E-value=0.048 Score=47.16 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=31.4
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~ 105 (313)
.++|||+|+|..|.+-++.|.+.|.+|++++++..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 57899999999999999999999999999976543
No 122
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=95.67 E-value=0.11 Score=46.42 Aligned_cols=94 Identities=21% Similarity=0.183 Sum_probs=59.7
Q ss_pred cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (313)
Q Consensus 72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~ 150 (313)
|+|||+||..-|+.+++.|.+.|+ |++-............. ....+.++ .+.+.+.+.++++++++++|+=.
T Consensus 1 m~ILvlgGTtE~r~la~~L~~~g~-v~~sv~t~~g~~~~~~~~~~~~v~~G------~lg~~~~l~~~l~~~~i~~vIDA 73 (249)
T PF02571_consen 1 MKILVLGGTTEGRKLAERLAEAGY-VIVSVATSYGGELLKPELPGLEVRVG------RLGDEEGLAEFLRENGIDAVIDA 73 (249)
T ss_pred CEEEEEechHHHHHHHHHHHhcCC-EEEEEEhhhhHhhhccccCCceEEEC------CCCCHHHHHHHHHhCCCcEEEEC
Confidence 689999999999999999999998 54322222211111111 11123333 23388999999999999999843
Q ss_pred -cCcCccc-HHHHHHHHHcCCcee
Q 021372 151 -YGFLAEN-AVFVEMCREHGINFI 172 (313)
Q Consensus 151 -~g~~~e~-~~~~~~l~~~gi~~~ 172 (313)
+.|-.+. ....+++.+.|++++
T Consensus 74 THPfA~~is~na~~a~~~~~ipyl 97 (249)
T PF02571_consen 74 THPFAAEISQNAIEACRELGIPYL 97 (249)
T ss_pred CCchHHHHHHHHHHHHhhcCcceE
Confidence 2222121 345677788888775
No 123
>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=95.56 E-value=0.068 Score=49.26 Aligned_cols=112 Identities=22% Similarity=0.321 Sum_probs=75.9
Q ss_pred HHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhC-CcEEEeeccCCCCc-----------cEEEeCCHHHHH
Q 021372 180 RIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELG-FPVMIKATAGGGGR-----------GMRLAKEPDEFV 247 (313)
Q Consensus 180 ~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg-~P~VvKP~~g~gg~-----------GV~~v~~~~el~ 247 (313)
.+...-+...++|.++|+.+|+.| ...++|++.+.++++| --+|||...-.||+ ||++|.+++|.+
T Consensus 22 ~L~~hey~~~~ll~~~Gv~vp~g~--vA~speEA~~~akklg~kdlVikAQ~lAgGRgKGtF~SglkgGV~iVf~p~Eak 99 (434)
T KOG2799|consen 22 SLGIHEYRSAALLRKYGINVPLGY--VAKSPEEAFAIAKKLGSKDLVIKAQVLAGGRGKGTFDSGLKGGVKIVFSPQEAK 99 (434)
T ss_pred hhhHHHHHHHHHHHHcCCCCCCCc--ccCCHHHHHHHHHHhCCcceEEEeeecccCcccCCcCcCcCCceEEEeChHHHH
Confidence 334455666899999999999997 8999999999999997 35999997554444 599999999999
Q ss_pred HHHHHHHHHHH----h---cCCCCcEEEeeccCCCcEEEEEEEEcC--CCCEEEE
Q 021372 248 KLLQQAKSEAA----A---AFGNDGVYLEKYVQNPRHIEFQVLADK--YGNVVHF 293 (313)
Q Consensus 248 ~~~~~~~~~~~----~---~~~~~~vlvEe~I~G~~e~~v~v~~d~--~G~vv~~ 293 (313)
+...++..... . ...-..|+|=+-..+..|+.+.++-|. +|+++..
T Consensus 100 ~va~qmiG~kLiTKQtG~~gk~c~~v~iC~Rk~~~~e~yFsil~dr~~k~pliIa 154 (434)
T KOG2799|consen 100 AVASQMIGKKLITKQTGPAGKACSEVYICERKHTRAEYYFSILMDRHTKGPLIIA 154 (434)
T ss_pred HHHHHhhcceeeeeccCCCCCccceEEEeeecchhhHHHHHHHHhcccCCCEEEE
Confidence 88877753210 0 000123444444444466666666654 3444443
No 124
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.52 E-value=0.045 Score=42.27 Aligned_cols=110 Identities=17% Similarity=0.130 Sum_probs=61.4
Q ss_pred EEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccCc
Q 021372 74 ILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGF 153 (313)
Q Consensus 74 ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g~ 153 (313)
|+|+|.|..|+.+++.|++.+++|++++.++.........-...++ + +..+.+.+.+ +.-.+.+.++...+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~-g------d~~~~~~l~~-a~i~~a~~vv~~~~~ 72 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIY-G------DATDPEVLER-AGIEKADAVVILTDD 72 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEE-S-------TTSHHHHHH-TTGGCESEEEEESSS
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhccccccc-c------cchhhhHHhh-cCccccCEEEEccCC
Confidence 6899999999999999999888999998776543332222233332 2 2344444444 344568888866542
Q ss_pred CcccHHHHHHHHHcC--CceeCCCHHHHHHhCCHHHHHHHHHHCCCCC
Q 021372 154 LAENAVFVEMCREHG--INFIGPNPDSIRIMGDKSTARETMKNAGVPT 199 (313)
Q Consensus 154 ~~e~~~~~~~l~~~g--i~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~ 199 (313)
..++......+++.+ .+++ ..+.|... .+.|++.|+..
T Consensus 73 d~~n~~~~~~~r~~~~~~~ii-------~~~~~~~~-~~~l~~~g~d~ 112 (116)
T PF02254_consen 73 DEENLLIALLARELNPDIRII-------ARVNDPEN-AELLRQAGADH 112 (116)
T ss_dssp HHHHHHHHHHHHHHTTTSEEE-------EEESSHHH-HHHHHHTT-SE
T ss_pred HHHHHHHHHHHHHHCCCCeEE-------EEECCHHH-HHHHHHCCcCE
Confidence 223333444444321 2222 23333333 55557777653
No 125
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.50 E-value=0.097 Score=48.11 Aligned_cols=134 Identities=16% Similarity=0.179 Sum_probs=88.5
Q ss_pred HhcCCCEEeeccC--cCccc---HHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHH----HHHHCC---CCCCCCCcccC
Q 021372 140 ISRGCTMLHPGYG--FLAEN---AVFVEMCREHGINFIGPNPDSIRIMGDKSTARE----TMKNAG---VPTVPGSDGLL 207 (313)
Q Consensus 140 ~~~~id~vip~~g--~~~e~---~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~----~l~~~G---ip~p~~~~~~~ 207 (313)
+....|+|+.... .+.++ -.+.-.+...||+.+ ++...+-++.||-..+. +....| +|..+.. ..
T Consensus 152 RsfkPdfVlirqhA~~mA~~~d~rslvig~qyagiP~v-NSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt--~y 228 (488)
T KOG3895|consen 152 RSFKPDFVLIRQHAFSMALNEDYRSLVIGLQYAGIPSV-NSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQT--FY 228 (488)
T ss_pred eeccCCEEEEcccchhhccccchHHHHHHHHhcCCccc-chhHHHHHhccchHHHHHHHHHHHhcCccccccceee--ec
Confidence 5567888887643 22222 344555677899998 89999999999876544 344566 5544431 22
Q ss_pred CCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEc
Q 021372 208 QSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLAD 285 (313)
Q Consensus 208 ~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d 285 (313)
-+-.+ ....-.||+|||--.+..|.|=.+|+|.+|+.+...-+.-. +-..-+|.||+-..++.++-++.
T Consensus 229 PnHK~---m~s~~tyPvVVkvghahsGmGKiKV~Nh~dfqDi~svval~------~Tyat~epFiDaKYDiriQKIG~ 297 (488)
T KOG3895|consen 229 PNHKE---MLSQPTYPVVVKVGHAHSGMGKIKVENHEDFQDIASVVALT------KTYATAEPFIDAKYDIRIQKIGH 297 (488)
T ss_pred CCchh---hccCCCCcEEEEecccccccceeeecchhhhHhHHHHHHHH------hhhhhccccccccceeehhhhhh
Confidence 22111 22233599999999999999999999999887754433211 14567889998866777776655
No 126
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=95.47 E-value=0.0025 Score=50.03 Aligned_cols=88 Identities=17% Similarity=0.181 Sum_probs=51.6
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCcchhhh-----hh--cC-ceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec-cCc
Q 021372 83 AVRVIRTAHEMGIPCVAVYSTIDKDALHV-----KL--AD-ESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG-YGF 153 (313)
Q Consensus 83 a~~v~~al~~~G~~vi~v~~~~~~~~~~~-----~~--ad-~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~-~g~ 153 (313)
|..+++++.+.+|+|+.++-+.+...... .. .+ ................ ........+|+|||. +|.
T Consensus 21 a~~v~~~L~~~~y~v~~i~i~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~DvvFp~lHG~ 96 (117)
T PF01820_consen 21 ARNVYEALDKEKYEVIPIYIDKDGRWYLGEGPEEYLDNDDDEEFSFKPLPEISASLI----EKNEQKLEVDVVFPVLHGP 96 (117)
T ss_dssp HHHHHHHSHTTTEEEEEEEETTTSCEEEEHHHCSHHHTTTCCCHEESSSCCEEEEET----TESTTCTTCSEEEEECCST
T ss_pred HHHHHHHHhhhcceEEEEeecCCCCEEEcccchhhcccCchhhcccccccccccccc----ccccccccCCEEEEeccCC
Confidence 88999999999999998876654311100 00 00 0000100000000000 000004679999998 688
Q ss_pred CcccHHHHHHHHHcCCceeCC
Q 021372 154 LAENAVFVEMCREHGINFIGP 174 (313)
Q Consensus 154 ~~e~~~~~~~l~~~gi~~~g~ 174 (313)
..|+..+..+|+-+++|+.|+
T Consensus 97 ~GEDG~iQglle~~~iPYvG~ 117 (117)
T PF01820_consen 97 NGEDGTIQGLLELLGIPYVGC 117 (117)
T ss_dssp TTSSSHHHHHHHHTT-EBSSS
T ss_pred CCcccHHHHHHHHcCCCCcCC
Confidence 999999999999999999873
No 127
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=95.46 E-value=0.098 Score=44.13 Aligned_cols=72 Identities=17% Similarity=0.256 Sum_probs=48.1
Q ss_pred cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (313)
Q Consensus 72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~ 150 (313)
+||.|+| +|..|-++++.+.++|++|+.+..++...... .+..+ + ..+..+++.+.+.+ .+.|+|+..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~---~~~~i-~-----q~Difd~~~~a~~l--~g~DaVIsA 69 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR---QGVTI-L-----QKDIFDLTSLASDL--AGHDAVISA 69 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc---cccee-e-----cccccChhhhHhhh--cCCceEEEe
Confidence 5788888 67789999999999999999997665443321 11111 1 11234455665554 568999988
Q ss_pred cCcC
Q 021372 151 YGFL 154 (313)
Q Consensus 151 ~g~~ 154 (313)
+++.
T Consensus 70 ~~~~ 73 (211)
T COG2910 70 FGAG 73 (211)
T ss_pred ccCC
Confidence 7655
No 128
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.44 E-value=0.033 Score=56.28 Aligned_cols=116 Identities=19% Similarity=0.187 Sum_probs=66.8
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~ 150 (313)
.++|+|+|.|..|+.+++.|++.|+++++++.|++......+.....+ .++ ..+. .+++.+.-.+.|+++..
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~-~GD------at~~-~~L~~agi~~A~~vvv~ 471 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVF-YGD------ATRM-DLLESAGAAKAEVLINA 471 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEE-EEe------CCCH-HHHHhcCCCcCCEEEEE
Confidence 578999999999999999999999999999887765444333333333 331 1223 34444444567888866
Q ss_pred cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCC
Q 021372 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTV 200 (313)
Q Consensus 151 ~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p 200 (313)
.+....+........++. |+...+..+.|... .+.|++.|....
T Consensus 472 ~~d~~~n~~i~~~ar~~~-----p~~~iiaRa~d~~~-~~~L~~~Gad~v 515 (621)
T PRK03562 472 IDDPQTSLQLVELVKEHF-----PHLQIIARARDVDH-YIRLRQAGVEKP 515 (621)
T ss_pred eCCHHHHHHHHHHHHHhC-----CCCeEEEEECCHHH-HHHHHHCCCCEE
Confidence 532222233333333321 22223334455433 334455565543
No 129
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=95.41 E-value=0.054 Score=48.62 Aligned_cols=81 Identities=15% Similarity=0.137 Sum_probs=53.6
Q ss_pred cccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcch-hhhhhcCce----EEccCCCCCCCcCCHHHHHHHHHh
Q 021372 68 TCRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDA-LHVKLADES----VCIGEAPSSQSYLLIPNVLSAAIS 141 (313)
Q Consensus 68 ~~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~-~~~~~ad~~----~~v~~~~~~~~~~~~~~l~~~~~~ 141 (313)
.++++++||+| ++.+|+.+++.+.+.|++++++..+.+... ....+.++. ..+. .+-.+..+.+.+.+..+.
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~--~DLs~~~~~~~l~~~l~~ 80 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIP--ADLSDPEALERLEDELKE 80 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEE--CcCCChhHHHHHHHHHHh
Confidence 34578999999 566899999999999999999976655322 222333322 2232 222233456677766666
Q ss_pred c--CCCEEeec
Q 021372 142 R--GCTMLHPG 150 (313)
Q Consensus 142 ~--~id~vip~ 150 (313)
. .||+++-.
T Consensus 81 ~~~~IdvLVNN 91 (265)
T COG0300 81 RGGPIDVLVNN 91 (265)
T ss_pred cCCcccEEEEC
Confidence 5 79999864
No 130
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=95.28 E-value=0.19 Score=41.84 Aligned_cols=85 Identities=16% Similarity=0.166 Sum_probs=55.1
Q ss_pred EEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccC
Q 021372 74 ILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYG 152 (313)
Q Consensus 74 ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g 152 (313)
|+|+| .|.+|..+++.|.+.|++|+++..++..... ...-.+ +. .+..+.+.+.+... ++|+|+...+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~---~~~~~~-~~-----~d~~d~~~~~~al~--~~d~vi~~~~ 69 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED---SPGVEI-IQ-----GDLFDPDSVKAALK--GADAVIHAAG 69 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH---CTTEEE-EE-----SCTTCHHHHHHHHT--TSSEEEECCH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc---cccccc-ce-----eeehhhhhhhhhhh--hcchhhhhhh
Confidence 78999 4889999999999999999999766543332 112112 21 12466777777775 7999987654
Q ss_pred cCccc----HHHHHHHHHcCC
Q 021372 153 FLAEN----AVFVEMCREHGI 169 (313)
Q Consensus 153 ~~~e~----~~~~~~l~~~gi 169 (313)
....+ ..+.+.+++.|+
T Consensus 70 ~~~~~~~~~~~~~~a~~~~~~ 90 (183)
T PF13460_consen 70 PPPKDVDAAKNIIEAAKKAGV 90 (183)
T ss_dssp STTTHHHHHHHHHHHHHHTTS
T ss_pred hhccccccccccccccccccc
Confidence 22221 234555556665
No 131
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=95.17 E-value=0.16 Score=45.29 Aligned_cols=35 Identities=11% Similarity=0.145 Sum_probs=32.0
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~ 105 (313)
..+++|+|+|..+..+++-++.+||+|+++|+.+.
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 57899999999999999999999999999986654
No 132
>PRK05993 short chain dehydrogenase; Provisional
Probab=95.15 E-value=0.096 Score=47.05 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=30.4
Q ss_pred cccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTID 105 (313)
Q Consensus 70 ~~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~~ 105 (313)
|++++||+|+ |.+|..+++.+.+.|++|++++.+..
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~ 39 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEE 39 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 4678999995 77899999999999999999865543
No 133
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=95.15 E-value=0.22 Score=52.92 Aligned_cols=162 Identities=14% Similarity=0.159 Sum_probs=95.7
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHc-CCc-------------EEEEecCCCcchhhhhhcCc-----eEEccCCCCCCCcCC
Q 021372 71 QEKILVANRGEIAVRVIRTAHEM-GIP-------------CVAVYSTIDKDALHVKLADE-----SVCIGEAPSSQSYLL 131 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~-G~~-------------vi~v~~~~~~~~~~~~~ad~-----~~~v~~~~~~~~~~~ 131 (313)
+++|+|+|+|.+|..+++.|.+. +++ |.+.+.+.... ..++.. .+.++ +.+
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a---~~la~~~~~~~~v~lD-------v~D 638 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDA---KETVEGIENAEAVQLD-------VSD 638 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHH---HHHHHhcCCCceEEee-------cCC
Confidence 68999999999999999999775 444 55554332211 122221 12222 456
Q ss_pred HHHHHHHHHhcCCCEEeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHH
Q 021372 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTE 211 (313)
Q Consensus 132 ~~~l~~~~~~~~id~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~ 211 (313)
.+.+.+++.+ +|+|+..... .-+..++..+.+.|.+++.-+.. ..+-..+.+.++++|+..-..+ .+--..+
T Consensus 639 ~e~L~~~v~~--~DaVIsalP~-~~H~~VAkaAieaGkHvv~eky~----~~e~~~L~e~Ak~AGV~~m~e~-GlDPGid 710 (1042)
T PLN02819 639 SESLLKYVSQ--VDVVISLLPA-SCHAVVAKACIELKKHLVTASYV----SEEMSALDSKAKEAGITILCEM-GLDPGID 710 (1042)
T ss_pred HHHHHHhhcC--CCEEEECCCc-hhhHHHHHHHHHcCCCEEECcCC----HHHHHHHHHHHHHcCCEEEECC-ccCHHHH
Confidence 7788777654 9999976532 23467788888999998744311 2223456688889998877664 2222233
Q ss_pred H--HHHHHHHh----CCcEEEeeccCCC--------CccEEEeCCHHHHHHHH
Q 021372 212 E--AVKLADEL----GFPVMIKATAGGG--------GRGMRLAKEPDEFVKLL 250 (313)
Q Consensus 212 ~--~~~~~~~l----g~P~VvKP~~g~g--------g~GV~~v~~~~el~~~~ 250 (313)
. +.+.+++. |-...++...|+= ..+-.+-.+++.+...+
T Consensus 711 ~~lA~~~Id~~~~~~GkI~s~~s~~GGLP~pe~~~npL~YkfsWSp~gvi~~~ 763 (1042)
T PLN02819 711 HMMAMKMIDDAHERGGKVKSFTSYCGGLPSPEAANNPLAYKFSWNPAGAIKAG 763 (1042)
T ss_pred HHHHHHHHHhhcccCCcEEEEEEEEcCccCcccCCCcccccccCCHHHHHHHh
Confidence 3 33445444 6566666666652 22333445666554443
No 134
>PRK04148 hypothetical protein; Provisional
Probab=95.13 E-value=0.082 Score=42.42 Aligned_cols=80 Identities=15% Similarity=0.113 Sum_probs=49.5
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEcc---CC-----------CCCCCcCCHHHHH
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIG---EA-----------PSSQSYLLIPNVL 136 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~---~~-----------~~~~~~~~~~~l~ 136 (313)
.+++|++|.| .|..+++.|.++|++|+++|.++.............+.-+ |+ .-....+-...++
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~~~ 95 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPFIL 95 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHHHH
Confidence 3689999998 7888999999999999999877653322222211111100 00 0001122345678
Q ss_pred HHHHhcCCCEEeecc
Q 021372 137 SAAISRGCTMLHPGY 151 (313)
Q Consensus 137 ~~~~~~~id~vip~~ 151 (313)
+++++.++|.++-..
T Consensus 96 ~la~~~~~~~~i~~l 110 (134)
T PRK04148 96 ELAKKINVPLIIKPL 110 (134)
T ss_pred HHHHHcCCCEEEEcC
Confidence 888888888887653
No 135
>PRK08177 short chain dehydrogenase; Provisional
Probab=95.08 E-value=0.095 Score=45.40 Aligned_cols=77 Identities=10% Similarity=0.092 Sum_probs=47.0
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcC-ceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLAD-ESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad-~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi 148 (313)
|++++|+| .+.+|..+++.+.+.|++|++++.++........... ..+.++ ..+....+.+.+.+...++|.|+
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D----~~d~~~~~~~~~~~~~~~id~vi 76 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQALPGVHIEKLD----MNDPASLDQLLQRLQGQRFDLLF 76 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhccccceEEcC----CCCHHHHHHHHHHhhcCCCCEEE
Confidence 36799999 6668999999999999999999766543221111111 122221 11222344555555445799988
Q ss_pred ecc
Q 021372 149 PGY 151 (313)
Q Consensus 149 p~~ 151 (313)
...
T Consensus 77 ~~a 79 (225)
T PRK08177 77 VNA 79 (225)
T ss_pred EcC
Confidence 654
No 136
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=95.02 E-value=0.22 Score=44.34 Aligned_cols=107 Identities=21% Similarity=0.293 Sum_probs=78.7
Q ss_pred HHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCc-EEEeeccCCCCc-----------cEEEeCCHHHHHHHHHH
Q 021372 185 KSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFP-VMIKATAGGGGR-----------GMRLAKEPDEFVKLLQQ 252 (313)
Q Consensus 185 K~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P-~VvKP~~g~gg~-----------GV~~v~~~~el~~~~~~ 252 (313)
.+..+++|+++|+.+-.++ ..++..++.+.+..++-| +|+|..--.||+ ||++-.+.++..+..++
T Consensus 24 EfQSK~~l~k~Gv~vQ~F~--Va~n~kea~E~~k~f~~~EyVvKAQILAGGRGKG~F~nG~KGGVhiTk~k~~vl~l~~q 101 (412)
T KOG1447|consen 24 EFQSKEILSKNGVRVQRFF--VADNAKEALEAAKRFNAKEYVVKAQILAGGRGKGVFNNGLKGGVHITKDKNVVLQLAKQ 101 (412)
T ss_pred HhhhHHHHHhcCeeEEEEE--EecCcHHHHHHHHhcCCcceEEeeeeeecCcccceecCCccceeEEecCHhHHHHHHHH
Confidence 4567899999999999885 778888888888888755 899997544444 36777888888888887
Q ss_pred HHHHHHhc-------CCCCcEEEeeccCCCcEEEEEEEEcC--CCCEEEE
Q 021372 253 AKSEAAAA-------FGNDGVYLEKYVQNPRHIEFQVLADK--YGNVVHF 293 (313)
Q Consensus 253 ~~~~~~~~-------~~~~~vlvEe~I~G~~e~~v~v~~d~--~G~vv~~ 293 (313)
+......- ..-+.+++-|-++-.+|.-+.++.|. +|+|+..
T Consensus 102 MIG~rL~TKQTpkeGv~VnKVMvAe~~dI~RETYLaiLmDRe~NGPVlva 151 (412)
T KOG1447|consen 102 MIGYRLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRECNGPVLVA 151 (412)
T ss_pred HHhhhhhhccCCccceeeeeEEEeeccccchheeeeeeeccccCCCEEEe
Confidence 75432110 01246888888888788888888876 6777654
No 137
>PRK05693 short chain dehydrogenase; Provisional
Probab=94.95 E-value=0.11 Score=46.58 Aligned_cols=34 Identities=12% Similarity=0.103 Sum_probs=28.7
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
||++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~~V~~~~r~~ 35 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARKA 35 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 36899999 56789999999999999999886543
No 138
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.94 E-value=0.17 Score=43.70 Aligned_cols=33 Identities=18% Similarity=0.311 Sum_probs=30.1
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
.++|||+|+|..|...++.|.+.|.+|+++..+
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 689999999999999999999999999999643
No 139
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.89 E-value=0.067 Score=38.57 Aligned_cols=59 Identities=14% Similarity=0.059 Sum_probs=42.3
Q ss_pred EEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (313)
Q Consensus 73 ~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi 148 (313)
||+|+|+|.+|..++..++++|.+|+++...+... ...+ ....+.+.+..++.+++...
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~----~~~~-------------~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL----PGFD-------------PDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS----TTSS-------------HHHHHHHHHHHHHTTEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh----hhcC-------------HHHHHHHHHHHHHCCCEEEe
Confidence 68999999999999999999999999997544321 1111 12244566677777777665
No 140
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.61 E-value=0.048 Score=41.62 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=30.2
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.++|||+|+|..|.+-++.|.+.|.+|+++.++.
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 6899999999999999999999999999997654
No 141
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=94.55 E-value=0.31 Score=41.40 Aligned_cols=101 Identities=19% Similarity=0.257 Sum_probs=61.4
Q ss_pred CCHHHHHHhCCHHHHHH----HHHHCC---CCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHH
Q 021372 174 PNPDSIRIMGDKSTARE----TMKNAG---VPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEF 246 (313)
Q Consensus 174 ~~~~~i~~~~DK~~~~~----~l~~~G---ip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el 246 (313)
++..++-++.||--... +.+++| +|..+.. ...+..+ ......||+|+|--.+.+|.|=.+++|..++
T Consensus 1 NSL~Siynf~dKpWvF~qLi~i~~~lG~e~FPLieQt--~ypnh~e---m~s~~~fPvVvKvG~~h~G~GKvkv~n~~~~ 75 (203)
T PF02750_consen 1 NSLHSIYNFCDKPWVFAQLIKIQKRLGPEKFPLIEQT--YYPNHRE---MLSAPRFPVVVKVGHAHAGMGKVKVDNQQDF 75 (203)
T ss_dssp S-HHHHHHTTSHHHHHHHHHHHHHHHHTTTS-B---E--EESSGGG---GCS-SSSSEEEEESS-STTTTEEEE-SHHHH
T ss_pred CcccchhhhcCCcHHHHHHHHHHHHhCCcccccceee--ecCChhh---hccCCCCCEEEEEccccCceeEEEEccHHHH
Confidence 35677788888875443 223443 5544432 2333333 2233579999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEc
Q 021372 247 VKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLAD 285 (313)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d 285 (313)
.+...-+... +.-+-+|.||+-..++.++-+++
T Consensus 76 qDi~sll~~~------~~Y~T~EPfId~kyDirvqkIG~ 108 (203)
T PF02750_consen 76 QDIASLLAIT------KDYATTEPFIDAKYDIRVQKIGN 108 (203)
T ss_dssp HHHHHHHHHH------TS-EEEEE---EEEEEEEEEETT
T ss_pred HHHHHHHHhc------CceEEeeccccceeEEEEEEEcC
Confidence 8876665543 36789999998777777777755
No 142
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=94.45 E-value=0.18 Score=47.60 Aligned_cols=33 Identities=21% Similarity=0.194 Sum_probs=29.3
Q ss_pred ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecC
Q 021372 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
.++|||+|+ |.+|..+++.|.+.|++|+.++..
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhCCCEEEEEEec
Confidence 478999995 889999999999999999998743
No 143
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=94.43 E-value=0.31 Score=46.37 Aligned_cols=74 Identities=19% Similarity=0.095 Sum_probs=48.0
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchh------hh-hhc-CceEEccCCCCCCCcCCHHHHHHHHH
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL------HV-KLA-DESVCIGEAPSSQSYLLIPNVLSAAI 140 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~------~~-~~a-d~~~~v~~~~~~~~~~~~~~l~~~~~ 140 (313)
..++|||+| .|.+|..+++.|.+.|++|+++..+...... .. ... .+.+.. +..+.+.+.++++
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~-------Dl~d~~~l~~~~~ 131 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFG-------DVTDADSLRKVLF 131 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEe-------eCCCHHHHHHHHH
Confidence 467899999 5779999999999999999988654422110 00 011 112222 2455677777776
Q ss_pred hc--CCCEEeec
Q 021372 141 SR--GCTMLHPG 150 (313)
Q Consensus 141 ~~--~id~vip~ 150 (313)
.. ++|.|+..
T Consensus 132 ~~~~~~D~Vi~~ 143 (390)
T PLN02657 132 SEGDPVDVVVSC 143 (390)
T ss_pred HhCCCCcEEEEC
Confidence 54 69998854
No 144
>PRK08017 oxidoreductase; Provisional
Probab=94.37 E-value=0.2 Score=44.04 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=30.4
Q ss_pred cccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTID 105 (313)
Q Consensus 70 ~~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~~ 105 (313)
|++++||+|+ |.+|..+++.+.+.|++|++++.+..
T Consensus 1 m~k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~ 37 (256)
T PRK08017 1 MQKSVLITGCSSGIGLEAALELKRRGYRVLAACRKPD 37 (256)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4578999996 88999999999999999988865543
No 145
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=94.35 E-value=0.11 Score=41.88 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=27.6
Q ss_pred EEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372 74 ILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (313)
Q Consensus 74 ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~ 105 (313)
++|+|+|..+..+++-++.+|++|+++++.+.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999987654
No 146
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.30 E-value=0.14 Score=45.27 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=30.1
Q ss_pred cccccEEEEEcCC---HhHHHHHHHHHHcCCcEEEEecC
Q 021372 68 TCRQEKILVANRG---EIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 68 ~~~~~~ILIig~g---~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
++..|++||+|++ .+|+.+++.|.+.|++|++.+.+
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~ 42 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN 42 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc
Confidence 3346889999975 79999999999999999988543
No 147
>PRK07326 short chain dehydrogenase; Provisional
Probab=94.23 E-value=0.21 Score=43.31 Aligned_cols=35 Identities=9% Similarity=0.087 Sum_probs=29.5
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
+.+++||+| +|.+|..+++.+.+.|++|++++.++
T Consensus 5 ~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~ 40 (237)
T PRK07326 5 KGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQ 40 (237)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCH
Confidence 357899999 57789999999999999999986543
No 148
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=94.22 E-value=0.2 Score=43.72 Aligned_cols=36 Identities=14% Similarity=0.013 Sum_probs=30.2
Q ss_pred ccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 69 CRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 69 ~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
++.++|||+| +|.+|..+++.+.+.|++|++++.+.
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~ 40 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICG 40 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3467899999 67789999999999999999886553
No 149
>PRK12828 short chain dehydrogenase; Provisional
Probab=94.20 E-value=0.27 Score=42.48 Aligned_cols=36 Identities=6% Similarity=0.014 Sum_probs=30.2
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID 105 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~ 105 (313)
..+++||+| +|.+|..+++.+.+.|++|++++.+..
T Consensus 6 ~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~ 42 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAA 42 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChH
Confidence 357899999 577899999999999999999876543
No 150
>PRK06182 short chain dehydrogenase; Validated
Probab=94.16 E-value=0.25 Score=44.13 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=29.5
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID 105 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~ 105 (313)
.++++|+| +|.+|..+++.+.+.|++|++++.+.+
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~ 38 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVD 38 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 57899999 567899999999999999998865543
No 151
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=94.15 E-value=0.26 Score=42.77 Aligned_cols=36 Identities=17% Similarity=0.102 Sum_probs=30.1
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID 105 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~ 105 (313)
++++|||+| .|.+|..+++.+.+.|++|+++..++.
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~ 40 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEE 40 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChh
Confidence 457899999 577899999999999999988865543
No 152
>PRK08264 short chain dehydrogenase; Validated
Probab=94.12 E-value=0.31 Score=42.39 Aligned_cols=75 Identities=17% Similarity=0.106 Sum_probs=46.4
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCC-cEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhc-CCCE
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGI-PCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISR-GCTM 146 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~-~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~-~id~ 146 (313)
..+++||+| +|.+|..+++.|.+.|+ +|++++.+...... .......+. .+..+.+.+.++.... .+|+
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~---~~~~~~~~~-----~D~~~~~~~~~~~~~~~~id~ 76 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD---LGPRVVPLQ-----LDVTDPASVAAAAEAASDVTI 76 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh---cCCceEEEE-----ecCCCHHHHHHHHHhcCCCCE
Confidence 357899999 57789999999999999 88888654432211 112222121 1133455555555543 4898
Q ss_pred EeeccC
Q 021372 147 LHPGYG 152 (313)
Q Consensus 147 vip~~g 152 (313)
|+-..+
T Consensus 77 vi~~ag 82 (238)
T PRK08264 77 LVNNAG 82 (238)
T ss_pred EEECCC
Confidence 876544
No 153
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.05 E-value=0.4 Score=39.60 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=29.7
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEec
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~ 102 (313)
.++|||+|+|..|.+.++.|.+.|.+|+++++
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 58899999999999999999999999999953
No 154
>PLN02572 UDP-sulfoquinovose synthase
Probab=94.05 E-value=0.48 Score=45.94 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=29.6
Q ss_pred cccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEe
Q 021372 68 TCRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY 101 (313)
Q Consensus 68 ~~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~ 101 (313)
+-++++|||+| +|.+|..+++.|.+.|++|++++
T Consensus 44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d 78 (442)
T PLN02572 44 SSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVD 78 (442)
T ss_pred cccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 33467899999 57799999999999999999986
No 155
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=94.04 E-value=0.31 Score=45.36 Aligned_cols=76 Identities=12% Similarity=-0.065 Sum_probs=48.7
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhh---hhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCE
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH---VKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~---~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~ 146 (313)
.++|||+| +|.+|..+++.|.+.|++|++++.+....... .........+ ..+..+.+.+.+++++.++|.
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-----~~Dl~~~~~~~~~~~~~~~d~ 78 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDH-----FGDIRDAAKLRKAIAEFKPEI 78 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEE-----EccCCCHHHHHHHHhhcCCCE
Confidence 47899999 57799999999999999999886543321111 0111111111 112345677778777778998
Q ss_pred Eeecc
Q 021372 147 LHPGY 151 (313)
Q Consensus 147 vip~~ 151 (313)
|+-.-
T Consensus 79 vih~A 83 (349)
T TIGR02622 79 VFHLA 83 (349)
T ss_pred EEECC
Confidence 87543
No 156
>PRK12829 short chain dehydrogenase; Provisional
Probab=94.04 E-value=0.2 Score=44.21 Aligned_cols=36 Identities=14% Similarity=0.100 Sum_probs=30.2
Q ss_pred ccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 69 CRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 69 ~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+.+++||+| .|.+|..+++.|.+.|++|++++.+.
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~ 45 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSE 45 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3468999999 56689999999999999998887544
No 157
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=94.02 E-value=0.32 Score=41.86 Aligned_cols=111 Identities=11% Similarity=0.146 Sum_probs=62.6
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~ 150 (313)
.++|+|+|.|..|..+++.|.+.|++|++.+.+............ ...++ .+.+.. ..+|+++|.
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g-~~~v~----------~~~l~~----~~~Dv~vp~ 92 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFG-ATVVA----------PEEIYS----VDADVFAPC 92 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcC-CEEEc----------chhhcc----ccCCEEEec
Confidence 578999999999999999999999999977544322111111101 11121 122222 359999986
Q ss_pred cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCC
Q 021372 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPG 202 (313)
Q Consensus 151 ~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~ 202 (313)
.. +.....+.+++.+.+.+.-... ..+.| ....+.|++.||.+.|-
T Consensus 93 A~---~~~I~~~~~~~l~~~~v~~~AN--~~~~~-~~~~~~L~~~Gi~~~Pd 138 (200)
T cd01075 93 AL---GGVINDDTIPQLKAKAIAGAAN--NQLAD-PRHGQMLHERGILYAPD 138 (200)
T ss_pred cc---ccccCHHHHHHcCCCEEEECCc--CccCC-HhHHHHHHHCCCEEeCc
Confidence 32 1211122234444444311100 11222 56788999999999774
No 158
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=93.99 E-value=0.33 Score=41.88 Aligned_cols=72 Identities=13% Similarity=0.082 Sum_probs=50.9
Q ss_pred EEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcC-ceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeecc
Q 021372 74 ILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLAD-ESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (313)
Q Consensus 74 ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad-~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~ 151 (313)
|||+| .|.+|..+++.|.+.|+.|+.+............... ..+..+ ..+.+.+.++....++|.|+-.-
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~d-------l~~~~~~~~~~~~~~~d~vi~~a 73 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKKLNVEFVIGD-------LTDKEQLEKLLEKANIDVVIHLA 73 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHHTTEEEEESE-------TTSHHHHHHHHHHHTESEEEEEB
T ss_pred EEEEccCCHHHHHHHHHHHHcCCccccccccccccccccccceEEEEEee-------ccccccccccccccCceEEEEee
Confidence 78999 7779999999999999998877655544432222112 233232 45678888888888999988654
Q ss_pred C
Q 021372 152 G 152 (313)
Q Consensus 152 g 152 (313)
+
T Consensus 74 ~ 74 (236)
T PF01370_consen 74 A 74 (236)
T ss_dssp S
T ss_pred c
Confidence 4
No 159
>PRK06500 short chain dehydrogenase; Provisional
Probab=93.98 E-value=0.17 Score=44.26 Aligned_cols=35 Identities=11% Similarity=0.111 Sum_probs=29.6
Q ss_pred ccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 69 CRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 69 ~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
.+.+++||+| ++.+|..+++.+.+.|++|++++.+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~ 39 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRD 39 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC
Confidence 3457899999 5678999999999999999988644
No 160
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.94 E-value=0.25 Score=43.03 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=29.0
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEE-ecC
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAV-YST 103 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v-~~~ 103 (313)
|++++||+| .|.+|..+++.+.+.|++++++ ..+
T Consensus 4 ~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~ 39 (247)
T PRK05565 4 MGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDIN 39 (247)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 467899999 5779999999999999999887 544
No 161
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.94 E-value=0.31 Score=42.26 Aligned_cols=34 Identities=15% Similarity=0.151 Sum_probs=28.2
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
++++|||+| .|.+|..+++.|.+.|++++++...
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 457899999 5778999999999999998775433
No 162
>PRK06483 dihydromonapterin reductase; Provisional
Probab=93.90 E-value=0.33 Score=42.23 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=30.4
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID 105 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~ 105 (313)
|.+++||+| ++.+|..+++.+.+.|++|++++.+..
T Consensus 1 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 37 (236)
T PRK06483 1 MPAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHY 37 (236)
T ss_pred CCceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCch
Confidence 568899999 566899999999999999999875543
No 163
>PLN02240 UDP-glucose 4-epimerase
Probab=93.90 E-value=0.36 Score=44.75 Aligned_cols=77 Identities=13% Similarity=-0.001 Sum_probs=47.5
Q ss_pred ccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchh-hhhh-------cCceEEccCCCCCCCcCCHHHHHHHH
Q 021372 69 CRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL-HVKL-------ADESVCIGEAPSSQSYLLIPNVLSAA 139 (313)
Q Consensus 69 ~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~-~~~~-------ad~~~~v~~~~~~~~~~~~~~l~~~~ 139 (313)
++.++|||+| .|.+|..+++.|.+.|++|++++........ .... ......+ .-+..+.+.+.+++
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~D~~~~~~l~~~~ 77 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFH-----KVDLRDKEALEKVF 77 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEE-----ecCcCCHHHHHHHH
Confidence 3468999999 4789999999999999999988632211100 0000 0111111 11245566777777
Q ss_pred HhcCCCEEeec
Q 021372 140 ISRGCTMLHPG 150 (313)
Q Consensus 140 ~~~~id~vip~ 150 (313)
.+.++|.|+-.
T Consensus 78 ~~~~~d~vih~ 88 (352)
T PLN02240 78 ASTRFDAVIHF 88 (352)
T ss_pred HhCCCCEEEEc
Confidence 66689988764
No 164
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.88 E-value=0.29 Score=42.82 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=29.7
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID 105 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~ 105 (313)
.+++||+| +|.+|..+++.|.+.|++|++++.++.
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~ 40 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEE 40 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 47899999 567899999999999999998876543
No 165
>PRK07856 short chain dehydrogenase; Provisional
Probab=93.87 E-value=0.33 Score=42.74 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=29.7
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
+.+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus 5 ~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~ 40 (252)
T PRK07856 5 TGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRA 40 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCh
Confidence 358899999 56689999999999999999986544
No 166
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=93.78 E-value=0.62 Score=41.89 Aligned_cols=113 Identities=11% Similarity=0.015 Sum_probs=63.7
Q ss_pred cEEEEEcCCHhHHHHHHHHHHc-CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372 72 EKILVANRGEIAVRVIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (313)
Q Consensus 72 ~~ILIig~g~~a~~v~~al~~~-G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~ 150 (313)
+||.|+|.|.+|..+++.+.+. ++++..+................... -+.+.+.+ ..++|+|+-.
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~--------~~~d~~~l-----~~~~DvVve~ 68 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVR--------VVSSVDAL-----PQRPDLVVEC 68 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCe--------eeCCHHHh-----ccCCCEEEEC
Confidence 5899999999999999999886 67776655222111110111100010 12334443 3669999854
Q ss_pred cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCC
Q 021372 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVP 198 (313)
Q Consensus 151 ~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip 198 (313)
.+.. ....+...+.+.|.+++.-++.++........+.+.+++.|..
T Consensus 69 t~~~-~~~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~ 115 (265)
T PRK13303 69 AGHA-ALKEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR 115 (265)
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence 3211 2234455555779888754554432222234567788888875
No 167
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=93.77 E-value=0.51 Score=47.02 Aligned_cols=36 Identities=19% Similarity=0.344 Sum_probs=30.1
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID 105 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~ 105 (313)
+.++|||+| .|.+|..+++.|.+.|++|+++..+..
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~e 115 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQ 115 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 357899999 577999999999999999998865543
No 168
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=93.73 E-value=0.16 Score=46.18 Aligned_cols=84 Identities=18% Similarity=0.232 Sum_probs=54.1
Q ss_pred cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (313)
Q Consensus 72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~ 150 (313)
|||||+| .|.+|..+.+.+++.|++++.++.. .++ ..+.+.+.++..+.++|+|+-.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~---------------~~d-------l~d~~~~~~~~~~~~pd~Vin~ 58 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRS---------------DLD-------LTDPEAVAKLLEAFKPDVVINC 58 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTT---------------CS--------TTSHHHHHHHHHHH--SEEEE-
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCch---------------hcC-------CCCHHHHHHHHHHhCCCeEecc
Confidence 6899999 6889999999999999998887322 121 3567788888888899999865
Q ss_pred cCcCc-c----c------------HHHHHHHHHcCCceeCCCHH
Q 021372 151 YGFLA-E----N------------AVFVEMCREHGINFIGPNPD 177 (313)
Q Consensus 151 ~g~~~-e----~------------~~~~~~l~~~gi~~~g~~~~ 177 (313)
-+... + + ..+++.+.+.|++++..+.+
T Consensus 59 aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd 102 (286)
T PF04321_consen 59 AAYTNVDACEKNPEEAYAINVDATKNLAEACKERGARLIHISTD 102 (286)
T ss_dssp -----HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEG
T ss_pred ceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeecc
Confidence 32111 0 0 13456667777776544444
No 169
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=93.69 E-value=0.36 Score=44.71 Aligned_cols=76 Identities=4% Similarity=-0.165 Sum_probs=47.5
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcch--hhhhhc-------CceEEccCCCCCCCcCCHHHHHHHH
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDA--LHVKLA-------DESVCIGEAPSSQSYLLIPNVLSAA 139 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~--~~~~~a-------d~~~~v~~~~~~~~~~~~~~l~~~~ 139 (313)
..++|||+| +|.+|..+++.|.+.|++|++++....... ....+. .....+ ..+..+.+.+.++.
T Consensus 5 ~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~Dl~d~~~~~~~~ 79 (340)
T PLN02653 5 PRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLH-----YGDLSDASSLRRWL 79 (340)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEE-----EecCCCHHHHHHHH
Confidence 357899999 577999999999999999998864332110 001111 111111 11245566777777
Q ss_pred HhcCCCEEeec
Q 021372 140 ISRGCTMLHPG 150 (313)
Q Consensus 140 ~~~~id~vip~ 150 (313)
+...+|.|+-.
T Consensus 80 ~~~~~d~Vih~ 90 (340)
T PLN02653 80 DDIKPDEVYNL 90 (340)
T ss_pred HHcCCCEEEEC
Confidence 77778988754
No 170
>PRK08267 short chain dehydrogenase; Provisional
Probab=93.68 E-value=0.32 Score=43.02 Aligned_cols=35 Identities=11% Similarity=-0.029 Sum_probs=29.4
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID 105 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~ 105 (313)
|+++||+| ++.+|..+++.+.+.|++|++++.+..
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~ 36 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEA 36 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 47899999 566899999999999999999865443
No 171
>PRK06194 hypothetical protein; Provisional
Probab=93.67 E-value=0.3 Score=43.88 Aligned_cols=34 Identities=9% Similarity=0.147 Sum_probs=29.1
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
++++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~ 40 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGMKLVLADVQQ 40 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 57899999 56789999999999999999886543
No 172
>PRK07236 hypothetical protein; Provisional
Probab=93.63 E-value=0.12 Score=48.88 Aligned_cols=36 Identities=6% Similarity=-0.112 Sum_probs=32.4
Q ss_pred ccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 69 ~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
++..+|+|+|+|..|+.++..|++.|++|++++..+
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 456899999999999999999999999999997543
No 173
>PRK08219 short chain dehydrogenase; Provisional
Probab=93.60 E-value=0.34 Score=41.60 Aligned_cols=74 Identities=8% Similarity=-0.012 Sum_probs=45.4
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhh-hhcC-ceEEccCCCCCCCcCCHHHHHHHHHhc-CCC
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV-KLAD-ESVCIGEAPSSQSYLLIPNVLSAAISR-GCT 145 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~-~~ad-~~~~v~~~~~~~~~~~~~~l~~~~~~~-~id 145 (313)
|++++||+| +|.+|..+++.|.+. ++|++++.+........ .... +.+.. +..+.+.+.+++... ++|
T Consensus 2 ~~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~-------D~~~~~~~~~~~~~~~~id 73 (227)
T PRK08219 2 ERPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAELPGATPFPV-------DLTDPEAIAAAVEQLGRLD 73 (227)
T ss_pred CCCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHhccceEEec-------CCCCHHHHHHHHHhcCCCC
Confidence 467899999 566899999999888 99999865432211111 1111 12222 234456666666543 689
Q ss_pred EEeecc
Q 021372 146 MLHPGY 151 (313)
Q Consensus 146 ~vip~~ 151 (313)
.|+-.-
T Consensus 74 ~vi~~a 79 (227)
T PRK08219 74 VLVHNA 79 (227)
T ss_pred EEEECC
Confidence 888653
No 174
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=93.57 E-value=0.35 Score=42.61 Aligned_cols=35 Identities=9% Similarity=0.051 Sum_probs=30.0
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
+.+++||+| +|.+|..+++.|.+.|++|++++.++
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~ 41 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQ 41 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCh
Confidence 368899999 47789999999999999999886554
No 175
>PRK06953 short chain dehydrogenase; Provisional
Probab=93.50 E-value=0.22 Score=42.95 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=28.6
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
|+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~ 35 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADGWRVIATARDA 35 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCH
Confidence 36789999 66689999999999999999986543
No 176
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.50 E-value=0.46 Score=41.60 Aligned_cols=35 Identities=17% Similarity=0.141 Sum_probs=30.8
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~ 105 (313)
.++|||+|+|..|.+=++.|.+.|.+|+++.+...
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~ 59 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFS 59 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 46899999999999989999999999999976543
No 177
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=93.47 E-value=0.82 Score=41.29 Aligned_cols=142 Identities=13% Similarity=0.078 Sum_probs=78.9
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHc--CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEM--GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~--G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v 147 (313)
.+.||.|+|.|.+|..+++.+.+. ++++..+. +++... ...++...- .. ..+.+.+.++ ..+|+|
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~-dr~~~~-a~~~a~~~g-~~-----~~~~~~eell-----~~~D~V 71 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVA-VRDPQR-HADFIWGLR-RP-----PPVVPLDQLA-----THADIV 71 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEE-CCCHHH-HHHHHHhcC-CC-----cccCCHHHHh-----cCCCEE
Confidence 357899999999999999999873 78877554 322211 122222210 00 0123455553 248999
Q ss_pred eeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCC--CCCCCcccCCCHHHHHHHHHHhCCcEE
Q 021372 148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVP--TVPGSDGLLQSTEEAVKLADELGFPVM 225 (313)
Q Consensus 148 ip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip--~p~~~~~~~~~~~~~~~~~~~lg~P~V 225 (313)
+..... .....+...+.+.|..++..+..++. +-..+.+.+++.|.+ +|..+ ..-.+-+ ...++|-+-.
T Consensus 72 vi~tp~-~~h~e~~~~aL~aGk~Vi~~s~gal~---~~~~L~~~A~~~g~~l~v~sGa---~~g~d~l--~~g~iG~~~~ 142 (271)
T PRK13302 72 VEAAPA-SVLRAIVEPVLAAGKKAIVLSVGALL---RNEDLIDLARQNGGQIIVPTGA---LLGLDAV--TAAAEGTIHS 142 (271)
T ss_pred EECCCc-HHHHHHHHHHHHcCCcEEEecchhHH---hHHHHHHHHHHcCCEEEEcchH---HHhHHHH--HHHHcCCceE
Confidence 876421 12234444444678877744433332 346778888998877 45443 2222222 2235676654
Q ss_pred -----EeeccCCC
Q 021372 226 -----IKATAGGG 233 (313)
Q Consensus 226 -----vKP~~g~g 233 (313)
-||..+..
T Consensus 143 v~~~trkpp~~~~ 155 (271)
T PRK13302 143 VKMITRKPPDGLK 155 (271)
T ss_pred EEEEEecCchHhc
Confidence 46655553
No 178
>PRK06398 aldose dehydrogenase; Validated
Probab=93.47 E-value=0.5 Score=41.89 Aligned_cols=34 Identities=15% Similarity=0.194 Sum_probs=28.9
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
+.+++||+| ++.+|..+++.+.+.|++|++++.+
T Consensus 5 ~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~ 39 (258)
T PRK06398 5 KDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIK 39 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 358899999 5568999999999999999988644
No 179
>PRK08643 acetoin reductase; Validated
Probab=93.44 E-value=0.33 Score=42.71 Aligned_cols=35 Identities=17% Similarity=0.115 Sum_probs=29.4
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
|.+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus 1 ~~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~ 36 (256)
T PRK08643 1 MSKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNE 36 (256)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 457899999 56689999999999999999886543
No 180
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=93.44 E-value=0.28 Score=47.36 Aligned_cols=35 Identities=9% Similarity=0.200 Sum_probs=30.9
Q ss_pred cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCc
Q 021372 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK 106 (313)
Q Consensus 72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~ 106 (313)
++|+|+|.|..|..+++.|.+.|+++++++.++..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~ 35 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEER 35 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 37999999999999999999999999999765543
No 181
>PRK06057 short chain dehydrogenase; Provisional
Probab=93.43 E-value=0.45 Score=41.97 Aligned_cols=35 Identities=11% Similarity=0.051 Sum_probs=29.8
Q ss_pred cccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 70 ~~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
..++|||+|+ +.+|..+++.+.+.|++|++++.+.
T Consensus 6 ~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~ 41 (255)
T PRK06057 6 AGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDP 41 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3588999995 7789999999999999999886544
No 182
>PRK09135 pteridine reductase; Provisional
Probab=93.40 E-value=0.48 Score=41.25 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=29.1
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
+.+++||+| +|.+|..+++.+.+.|++|++++..
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~ 39 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGYRVAIHYHR 39 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 357899999 5668999999999999999998643
No 183
>PRK07774 short chain dehydrogenase; Provisional
Probab=93.39 E-value=0.43 Score=41.71 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=30.0
Q ss_pred cccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 70 ~~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
+.+++||+|+ |.+|..+++.+.+.|++|++++.+.
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~ 40 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALAREGASVVVADINA 40 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3578999995 7799999999999999999987543
No 184
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=93.37 E-value=1.3 Score=39.17 Aligned_cols=118 Identities=18% Similarity=0.263 Sum_probs=71.9
Q ss_pred cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (313)
Q Consensus 72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~ 150 (313)
++|||+| .|.+|..+++.|.+.|++|.++..++....... ....+.. .++.+.+.+.... .+++.++..
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~--~~v~~~~------~d~~~~~~l~~a~--~G~~~~~~i 70 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA--GGVEVVL------GDLRDPKSLVAGA--KGVDGVLLI 70 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc--CCcEEEE------eccCCHhHHHHHh--ccccEEEEE
Confidence 4699999 677899999999999999999977665444333 2212212 2356666777666 456665544
Q ss_pred cCcCc-----cc---HHHHHHHHHcC--Cc------eeCCC-HHHHHHhCCHHHHHHHHHHCCCCC
Q 021372 151 YGFLA-----EN---AVFVEMCREHG--IN------FIGPN-PDSIRIMGDKSTARETMKNAGVPT 199 (313)
Q Consensus 151 ~g~~~-----e~---~~~~~~l~~~g--i~------~~g~~-~~~i~~~~DK~~~~~~l~~~Gip~ 199 (313)
.+... .. .......++.+ .. .++.+ ........+|...-+.+...|++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~a~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~l~~sg~~~ 136 (275)
T COG0702 71 SGLLDGSDAFRAVQVTAVVRAAEAAGAGVKHGVSLSVLGADAASPSALARAKAAVEAALRSSGIPY 136 (275)
T ss_pred ecccccccchhHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCCccHHHHHHHHHHHHHHhcCCCe
Confidence 32111 11 12223333323 21 23322 244566888999999999999983
No 185
>PRK08265 short chain dehydrogenase; Provisional
Probab=93.35 E-value=0.3 Score=43.36 Aligned_cols=34 Identities=18% Similarity=0.106 Sum_probs=29.3
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 40 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGARVAIVDIDA 40 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 57899999 46789999999999999999986554
No 186
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=93.33 E-value=0.41 Score=42.22 Aligned_cols=36 Identities=14% Similarity=0.039 Sum_probs=30.1
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID 105 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~ 105 (313)
+.+++||+| ++.+|..+++.|.+.|++|++++.+..
T Consensus 5 ~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~ 41 (257)
T PRK07067 5 QGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPA 41 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHH
Confidence 357899999 577899999999999999999865543
No 187
>PRK07074 short chain dehydrogenase; Provisional
Probab=93.32 E-value=0.39 Score=42.29 Aligned_cols=35 Identities=20% Similarity=0.193 Sum_probs=29.5
Q ss_pred cccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 70 ~~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
|.+++||+|+ +.+|..+++.|.+.|++|++++.+.
T Consensus 1 ~~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~ 36 (257)
T PRK07074 1 TKRTALVTGAAGGIGQALARRFLAAGDRVLALDIDA 36 (257)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3578999994 6789999999999999999886543
No 188
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=93.29 E-value=0.61 Score=37.52 Aligned_cols=32 Identities=9% Similarity=0.197 Sum_probs=27.5
Q ss_pred EEEEEcCCHhHHHHHHHHHHcCCc-EEEEecCC
Q 021372 73 KILVANRGEIAVRVIRTAHEMGIP-CVAVYSTI 104 (313)
Q Consensus 73 ~ILIig~g~~a~~v~~al~~~G~~-vi~v~~~~ 104 (313)
+|+|+|.|.+|..+++.|-+.|+. ++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 589999999999999999999994 77775543
No 189
>PRK12742 oxidoreductase; Provisional
Probab=93.27 E-value=0.53 Score=40.81 Aligned_cols=75 Identities=15% Similarity=0.089 Sum_probs=44.4
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhh--hhhcCceEEccCCCCCCCcCCHHHHHHHHHhc-CCC
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH--VKLADESVCIGEAPSSQSYLLIPNVLSAAISR-GCT 145 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~--~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~-~id 145 (313)
+.++|||+| ++.+|..+++.+.+.|++|+++.......... .......+..+ ..+.+.+.++..+. ++|
T Consensus 5 ~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D-------~~~~~~~~~~~~~~~~id 77 (237)
T PRK12742 5 TGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVQTD-------SADRDAVIDVVRKSGALD 77 (237)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHhCCeEEecC-------CCCHHHHHHHHHHhCCCc
Confidence 358899999 56799999999999999988764321111100 11111222221 23445566665554 489
Q ss_pred EEeecc
Q 021372 146 MLHPGY 151 (313)
Q Consensus 146 ~vip~~ 151 (313)
+++-.-
T Consensus 78 ~li~~a 83 (237)
T PRK12742 78 ILVVNA 83 (237)
T ss_pred EEEECC
Confidence 887553
No 190
>PRK06988 putative formyltransferase; Provisional
Probab=93.26 E-value=0.3 Score=45.04 Aligned_cols=78 Identities=14% Similarity=0.120 Sum_probs=50.1
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcch------hhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcC
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDA------LHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRG 143 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~------~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~ 143 (313)
||+||++.|.+..+...+++|.+.|+++.+|.+.++... ....++.+.- ++ -....+ .+-+.+++.+++.+
T Consensus 1 ~~mkIvf~Gs~~~a~~~L~~L~~~~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~g-ip-~~~~~~-~~~~~~~~~l~~~~ 77 (312)
T PRK06988 1 MKPRAVVFAYHNVGVRCLQVLLARGVDVALVVTHEDNPTENIWFGSVAAVAAEHG-IP-VITPAD-PNDPELRAAVAAAA 77 (312)
T ss_pred CCcEEEEEeCcHHHHHHHHHHHhCCCCEEEEEcCCCCCccCcCCCHHHHHHHHcC-Cc-EEcccc-CCCHHHHHHHHhcC
Confidence 357999999999999999999999999988876654332 1223332210 10 000011 22345677888899
Q ss_pred CCEEeec
Q 021372 144 CTMLHPG 150 (313)
Q Consensus 144 id~vip~ 150 (313)
+|+++..
T Consensus 78 ~Dliv~~ 84 (312)
T PRK06988 78 PDFIFSF 84 (312)
T ss_pred CCEEEEe
Confidence 9988754
No 191
>PRK07825 short chain dehydrogenase; Provisional
Probab=93.22 E-value=0.29 Score=43.69 Aligned_cols=34 Identities=9% Similarity=0.065 Sum_probs=28.8
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+++||+| +|.+|..+++.|.+.|++|++++.+.
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~ 39 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGARVAIGDLDE 39 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence 57899999 56689999999999999998886543
No 192
>PRK12939 short chain dehydrogenase; Provisional
Probab=93.22 E-value=0.47 Score=41.40 Aligned_cols=34 Identities=12% Similarity=0.091 Sum_probs=29.1
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+++||+| +|.+|..+++.+.+.|+++++++.+.
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~ 41 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGATVAFNDGLA 41 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCH
Confidence 58899999 57799999999999999999886443
No 193
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=93.20 E-value=0.48 Score=44.03 Aligned_cols=76 Identities=13% Similarity=0.026 Sum_probs=44.4
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC-Ccchh--hhhhc--CceEEccCCCCCCCcCCHHHHHHHHHhcCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI-DKDAL--HVKLA--DESVCIGEAPSSQSYLLIPNVLSAAISRGC 144 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~-~~~~~--~~~~a--d~~~~v~~~~~~~~~~~~~~l~~~~~~~~i 144 (313)
|++|||+| .|.+|..+++.|.+.|++++++.... ..... ..... .....+. -+..+.+.+.++.++.++
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~Dl~d~~~~~~~~~~~~~ 75 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEK-----VDICDRAELARVFTEHQP 75 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccccchhhhhhcccCCceEEEE-----CCCcChHHHHHHHhhcCC
Confidence 36899999 57799999999999999865443221 11000 00100 1111110 123456677777777779
Q ss_pred CEEeecc
Q 021372 145 TMLHPGY 151 (313)
Q Consensus 145 d~vip~~ 151 (313)
|.|+-.-
T Consensus 76 D~Vih~A 82 (355)
T PRK10217 76 DCVMHLA 82 (355)
T ss_pred CEEEECC
Confidence 9887553
No 194
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=93.18 E-value=0.45 Score=44.09 Aligned_cols=72 Identities=8% Similarity=-0.118 Sum_probs=47.0
Q ss_pred cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcc--hhhhhhc----------CceEEccCCCCCCCcCCHHHHHHH
Q 021372 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKD--ALHVKLA----------DESVCIGEAPSSQSYLLIPNVLSA 138 (313)
Q Consensus 72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~--~~~~~~a----------d~~~~v~~~~~~~~~~~~~~l~~~ 138 (313)
++|||+| +|.+|..+++.|.+.|++|++++..+... .....+. -..+. .+..+.+.+.++
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~Dl~d~~~l~~~ 73 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHY-------GDLTDSSNLRRI 73 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEE-------eccCCHHHHHHH
Confidence 5899999 57799999999999999999886443211 0000110 01111 124566778888
Q ss_pred HHhcCCCEEeec
Q 021372 139 AISRGCTMLHPG 150 (313)
Q Consensus 139 ~~~~~id~vip~ 150 (313)
++..++|.|+-.
T Consensus 74 ~~~~~~d~ViH~ 85 (343)
T TIGR01472 74 IDEIKPTEIYNL 85 (343)
T ss_pred HHhCCCCEEEEC
Confidence 887788987743
No 195
>PRK10537 voltage-gated potassium channel; Provisional
Probab=93.17 E-value=0.37 Score=45.95 Aligned_cols=113 Identities=13% Similarity=0.091 Sum_probs=62.7
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~ 150 (313)
+++++|+|.|..|..+++.|++.|+++++++.+.. .. ....+..+..+ +..+. +.++.+.-.+.++++..
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~--~~-~~~~g~~vI~G------D~td~-e~L~~AgI~~A~aVI~~ 309 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGL--EH-RLPDDADLIPG------DSSDS-AVLKKAGAARARAILAL 309 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECchh--hh-hccCCCcEEEe------CCCCH-HHHHhcCcccCCEEEEc
Confidence 57899999999999999999999999999975422 11 11112222222 12333 34444444467888865
Q ss_pred cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCC
Q 021372 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPT 199 (313)
Q Consensus 151 ~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~ 199 (313)
.+...++.......++.+ |+...+..+.|.. ..+.++++|...
T Consensus 310 t~dD~~Nl~ivL~ar~l~-----p~~kIIa~v~~~~-~~~~L~~~GaD~ 352 (393)
T PRK10537 310 RDNDADNAFVVLAAKEMS-----SDVKTVAAVNDSK-NLEKIKRVHPDM 352 (393)
T ss_pred CCChHHHHHHHHHHHHhC-----CCCcEEEEECCHH-HHHHHHhcCCCE
Confidence 433333333333333322 2223333444443 356667777553
No 196
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.17 E-value=0.51 Score=41.08 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=28.8
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~ 41 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEGVNVGLLARTE 41 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 57899999 55689999999999999999986543
No 197
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=93.17 E-value=0.39 Score=43.81 Aligned_cols=70 Identities=21% Similarity=0.144 Sum_probs=43.6
Q ss_pred cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (313)
Q Consensus 72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~ 150 (313)
++|||+| +|.+|..+++.|.+.|++|++++..+...........+.+.. +..+.+.+.+++. ++|.|+-.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~-------D~~~~~~l~~~~~--~~d~vi~~ 71 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEG-------DLRDPASLRKAVA--GCRALFHV 71 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEe-------eCCCHHHHHHHHh--CCCEEEEe
Confidence 3799999 578999999999999999999876543211100011112211 2345566666664 47877643
No 198
>PLN02686 cinnamoyl-CoA reductase
Probab=93.14 E-value=0.41 Score=45.07 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=32.9
Q ss_pred CCcCcccccccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecC
Q 021372 62 GGALKVTCRQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 62 ~~~~~~~~~~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
++..+...++++|||+|+ |.+|..+++.|.+.|++|+++..+
T Consensus 44 ~~~~~~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~ 86 (367)
T PLN02686 44 AGDAGADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDT 86 (367)
T ss_pred ccccccCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCC
Confidence 334445556789999994 778999999999999999876433
No 199
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=93.10 E-value=0.73 Score=39.93 Aligned_cols=89 Identities=11% Similarity=0.109 Sum_probs=54.1
Q ss_pred ccEEEEEcCCHhHHHHHHHH--HHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372 71 QEKILVANRGEIAVRVIRTA--HEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al--~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi 148 (313)
.++|+|+|.|..|..+++.+ ...|++++.+.++ ++... ...... +.+ ...+.+.+++++.++|.++
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~-d~~~~-~~~i~g-~~v---------~~~~~l~~li~~~~iD~Vi 151 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDV-DPEKI-GTKIGG-IPV---------YHIDELEEVVKENDIEIGI 151 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEEC-Chhhc-CCEeCC-eEE---------cCHHHHHHHHHHCCCCEEE
Confidence 46899999999999988763 3578888876533 21111 111111 111 2356778888888999988
Q ss_pred eccCcCcccHHHHHHHHHcCCcee
Q 021372 149 PGYGFLAENAVFVEMCREHGINFI 172 (313)
Q Consensus 149 p~~g~~~e~~~~~~~l~~~gi~~~ 172 (313)
.+... .....+.+.+.+.|+..+
T Consensus 152 Ia~P~-~~~~~i~~~l~~~Gi~~i 174 (213)
T PRK05472 152 LTVPA-EAAQEVADRLVEAGIKGI 174 (213)
T ss_pred EeCCc-hhHHHHHHHHHHcCCCEE
Confidence 66422 122345566667776544
No 200
>PRK07478 short chain dehydrogenase; Provisional
Probab=93.10 E-value=0.4 Score=42.22 Aligned_cols=34 Identities=9% Similarity=0.030 Sum_probs=29.0
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~ 40 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQ 40 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 57899999 55689999999999999999886544
No 201
>PRK07060 short chain dehydrogenase; Provisional
Probab=93.09 E-value=0.55 Score=40.89 Aligned_cols=74 Identities=12% Similarity=-0.041 Sum_probs=45.5
Q ss_pred ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCCCcchhh-hhhcCceEEccCCCCCCCcCCHHHHHHHHHh-cCCCEE
Q 021372 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-VKLADESVCIGEAPSSQSYLLIPNVLSAAIS-RGCTML 147 (313)
Q Consensus 71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~-~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~-~~id~v 147 (313)
.++++|+|+ +.+|..+++.+.+.|++|++++.+....... .......+..+ ..+.+.+.++... .++|+|
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D-------~~~~~~v~~~~~~~~~~d~v 81 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGETGCEPLRLD-------VGDDAAIRAALAAAGAFDGL 81 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeEEEec-------CCCHHHHHHHHHHhCCCCEE
Confidence 478999995 6799999999999999999886543221111 11112233222 2334455555544 358988
Q ss_pred eecc
Q 021372 148 HPGY 151 (313)
Q Consensus 148 ip~~ 151 (313)
+-.-
T Consensus 82 i~~a 85 (245)
T PRK07060 82 VNCA 85 (245)
T ss_pred EECC
Confidence 8654
No 202
>PRK07024 short chain dehydrogenase; Provisional
Probab=93.06 E-value=0.44 Score=42.12 Aligned_cols=35 Identities=14% Similarity=0.113 Sum_probs=29.6
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
|++++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus 1 ~~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~ 36 (257)
T PRK07024 1 MPLKVFITGASSGIGQALAREYARQGATLGLVARRT 36 (257)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 357899999 66689999999999999999987543
No 203
>PRK07577 short chain dehydrogenase; Provisional
Probab=93.02 E-value=0.57 Score=40.49 Aligned_cols=35 Identities=11% Similarity=0.197 Sum_probs=29.4
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID 105 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~ 105 (313)
.+++||+| ++.+|..+++.+.+.|++|++++.+..
T Consensus 3 ~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~ 38 (234)
T PRK07577 3 SRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAI 38 (234)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 46899999 566899999999999999999875543
No 204
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=92.97 E-value=0.53 Score=37.12 Aligned_cols=32 Identities=13% Similarity=0.214 Sum_probs=26.7
Q ss_pred cEEEEEcC-CHhHHHHHHHHHH-cCCcEEEEecC
Q 021372 72 EKILVANR-GEIAVRVIRTAHE-MGIPCVAVYST 103 (313)
Q Consensus 72 ~~ILIig~-g~~a~~v~~al~~-~G~~vi~v~~~ 103 (313)
+||+|+|. |..|+.+++.+.+ .|+++......
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~ 34 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDR 34 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEET
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEec
Confidence 47999997 9999999999999 78887765433
No 205
>PRK08703 short chain dehydrogenase; Provisional
Probab=92.97 E-value=0.35 Score=42.12 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=29.1
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.++++|+| ++.+|..+++.+.+.|++|++++.+.
T Consensus 6 ~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~ 40 (239)
T PRK08703 6 DKTILVTGASQGLGEQVAKAYAAAGATVILVARHQ 40 (239)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence 57899999 56689999999999999999887554
No 206
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.94 E-value=1.9 Score=41.59 Aligned_cols=112 Identities=17% Similarity=0.236 Sum_probs=65.2
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchh--hhhhc--CceEEccCCCCCCCcCCHHHHHHHHHhcCCCE
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL--HVKLA--DESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~--~~~~a--d~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~ 146 (313)
.++|+|+|+|.+|..+++.|.+.|++|++++.+...... ...+. ...+... +. .+. ...++|+
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~------~~--~~~-----~~~~~d~ 71 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLG------EY--PEE-----FLEGVDL 71 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeC------Cc--chh-----HhhcCCE
Confidence 688999999999999999999999999998764321110 01111 1111111 01 111 1235898
Q ss_pred EeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHh-----------CC----HHHHHHHHHHCCC
Q 021372 147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIM-----------GD----KSTARETMKNAGV 197 (313)
Q Consensus 147 vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~-----------~D----K~~~~~~l~~~Gi 197 (313)
|+...+....+ .....+.+.|++++ ...+..... .- |....++|+..|-
T Consensus 72 vv~~~g~~~~~-~~~~~a~~~~i~~~-~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~~g~ 135 (450)
T PRK14106 72 VVVSPGVPLDS-PPVVQAHKKGIEVI-GEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNAGR 135 (450)
T ss_pred EEECCCCCCCC-HHHHHHHHCCCcEE-eHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcCC
Confidence 88766543333 35555667888887 344443332 22 3345567777774
No 207
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=92.94 E-value=0.3 Score=43.33 Aligned_cols=34 Identities=9% Similarity=0.104 Sum_probs=28.9
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~ 40 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAEGARVAVLERSA 40 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 57899999 45689999999999999999886543
No 208
>PRK06180 short chain dehydrogenase; Provisional
Probab=92.89 E-value=0.3 Score=43.77 Aligned_cols=35 Identities=11% Similarity=0.120 Sum_probs=29.8
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID 105 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~ 105 (313)
++++||+| +|.+|..+++.|.+.|++|++++.++.
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~ 39 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEA 39 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHH
Confidence 57899999 566899999999999999999875543
No 209
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.88 E-value=0.49 Score=41.54 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=29.0
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
|.+++||+| +|.+|..+++.|.+.|++|++++..
T Consensus 1 ~~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~ 35 (256)
T PRK12745 1 MRPVALVTGGRRGIGLGIARALAAAGFDLAINDRP 35 (256)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCCEEEEEecC
Confidence 457899999 5668999999999999999988643
No 210
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=92.85 E-value=0.96 Score=40.62 Aligned_cols=117 Identities=14% Similarity=0.113 Sum_probs=64.1
Q ss_pred EEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHh----cC-CCE
Q 021372 73 KILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS----RG-CTM 146 (313)
Q Consensus 73 ~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~----~~-id~ 146 (313)
+|||+| .|.+|..+++.|.+.|++|.++..++..... ...+.+. -++.+.+.+.+..+. .+ +|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~---~~~~~~~-------~d~~d~~~l~~a~~~~~~~~g~~d~ 70 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAG---PNEKHVK-------FDWLDEDTWDNPFSSDDGMEPEISA 70 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccC---CCCcccc-------ccCCCHHHHHHHHhcccCcCCceeE
Confidence 489999 5889999999999999999998765542211 1111111 235666666666542 34 777
Q ss_pred EeeccCcCcc----cHHHHHHHHHcCCcee-CCCHH-HHHHhCCHHHHHHHHHHC-CCCC
Q 021372 147 LHPGYGFLAE----NAVFVEMCREHGINFI-GPNPD-SIRIMGDKSTARETMKNA-GVPT 199 (313)
Q Consensus 147 vip~~g~~~e----~~~~~~~l~~~gi~~~-g~~~~-~i~~~~DK~~~~~~l~~~-Gip~ 199 (313)
++...+.... ...+.+.+.+.|++-+ ..+.. .......+..+.+.+++. |++.
T Consensus 71 v~~~~~~~~~~~~~~~~~i~aa~~~gv~~~V~~Ss~~~~~~~~~~~~~~~~l~~~~gi~~ 130 (285)
T TIGR03649 71 VYLVAPPIPDLAPPMIKFIDFARSKGVRRFVLLSASIIEKGGPAMGQVHAHLDSLGGVEY 130 (285)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHHcCCCEEEEeeccccCCCCchHHHHHHHHHhccCCCE
Confidence 7643321111 1234555666776422 11110 000112344455677775 7764
No 211
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.85 E-value=2 Score=41.73 Aligned_cols=114 Identities=13% Similarity=0.189 Sum_probs=65.5
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhh--hhhc--CceEEccCCCCCCCcCCHHHHHHHHHhcCCCE
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH--VKLA--DESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~--~~~a--d~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~ 146 (313)
.++|+|+|.|..|+.+++.|++.|+.|.+.|..+...... ..+. ...+..+ ....+.+ .++|.
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~-------~~~~~~~------~~~dl 80 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLG-------ENYLDKL------DGFDV 80 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeC-------CCChHHh------ccCCE
Confidence 4689999999999999999999999999987543222110 1122 1122121 0111222 34788
Q ss_pred EeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHh-----------C----CHHHHHHHHHHCCCCC
Q 021372 147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIM-----------G----DKSTARETMKNAGVPT 199 (313)
Q Consensus 147 vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~-----------~----DK~~~~~~l~~~Gip~ 199 (313)
|+...+....+. ....+.+.|+++.+ ..+.+... . -|..+.++|+..|..+
T Consensus 81 VV~Spgi~~~~p-~~~~a~~~~i~i~s-~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~ 146 (458)
T PRK01710 81 IFKTPSMRIDSP-ELVKAKEEGAYITS-EMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGYKT 146 (458)
T ss_pred EEECCCCCCCch-HHHHHHHcCCcEEe-chHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCCCE
Confidence 887654333333 34444578888873 44433221 1 2445557777777654
No 212
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=92.76 E-value=0.47 Score=45.79 Aligned_cols=116 Identities=8% Similarity=0.044 Sum_probs=65.5
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi 148 (313)
.+++++|+|.|..|..+++.|.+.|+++++++.+++........ .+..+..+ +..+.+.+.+ +.-.+.|.|+
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~g------d~~~~~~L~~-~~~~~a~~vi 302 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHG------DGTDQELLEE-EGIDEADAFI 302 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEEC------CCCCHHHHHh-cCCccCCEEE
Confidence 36889999999999999999999999999997766533222211 12222222 1233434433 3334688888
Q ss_pred eccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCC
Q 021372 149 PGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPT 199 (313)
Q Consensus 149 p~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~ 199 (313)
...+....+......+.+.+.. ..+..+.|... .+.++.+|+..
T Consensus 303 ~~~~~~~~n~~~~~~~~~~~~~------~ii~~~~~~~~-~~~~~~~g~~~ 346 (453)
T PRK09496 303 ALTNDDEANILSSLLAKRLGAK------KVIALVNRPAY-VDLVEGLGIDI 346 (453)
T ss_pred ECCCCcHHHHHHHHHHHHhCCC------eEEEEECCcch-HHHHHhcCCCE
Confidence 6543222222222333444432 22233444443 45578888653
No 213
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.75 E-value=0.89 Score=44.39 Aligned_cols=112 Identities=14% Similarity=0.183 Sum_probs=67.0
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchh--hhhhcC--ceEEccCCCCCCCcCCHHHHHHHHHhcCCCE
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL--HVKLAD--ESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~--~~~~ad--~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~ 146 (313)
.++|+|+|+|.+|+.+++.|+++|++|++++........ ...+.+ -.++.+. ..+ ....+|.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~--------~~~------~~~~~D~ 81 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGP--------GPT------LPEDTDL 81 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECC--------Ccc------ccCCCCE
Confidence 578999999999999999999999999998643321111 111211 1222221 011 1245888
Q ss_pred EeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCC-------------------HHHHHHHHHHCCCC
Q 021372 147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGD-------------------KSTARETMKNAGVP 198 (313)
Q Consensus 147 vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~D-------------------K~~~~~~l~~~Gip 198 (313)
|+...|....+. +...+.+.|+++. ...+.+....+ |....++|+..|..
T Consensus 82 Vv~s~Gi~~~~~-~~~~a~~~gi~v~-~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~ 150 (480)
T PRK01438 82 VVTSPGWRPDAP-LLAAAADAGIPVW-GEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLR 150 (480)
T ss_pred EEECCCcCCCCH-HHHHHHHCCCeec-chHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCC
Confidence 887766544443 3444567899887 35554433221 33456777777754
No 214
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=92.73 E-value=1.6 Score=33.53 Aligned_cols=87 Identities=16% Similarity=0.166 Sum_probs=51.1
Q ss_pred EEEEEcCCHhHHHHHHHHHHc--CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372 73 KILVANRGEIAVRVIRTAHEM--GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (313)
Q Consensus 73 ~ILIig~g~~a~~v~~al~~~--G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~ 150 (313)
||+|+|.|..+...++++.+. +++++.+. +++.... ..++.. +.++ .|.+.+ ++....++|+|+..
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~-d~~~~~~-~~~~~~-~~~~------~~~~~~---~ll~~~~~D~V~I~ 69 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVC-DPDPERA-EAFAEK-YGIP------VYTDLE---ELLADEDVDAVIIA 69 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEE-CSSHHHH-HHHHHH-TTSE------EESSHH---HHHHHTTESEEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEE-eCCHHHH-HHHHHH-hccc------chhHHH---HHHHhhcCCEEEEe
Confidence 799999999999999888887 55666554 3332211 111110 0010 134444 44445689999876
Q ss_pred cCcCcccHHHHHHHHHcCCcee
Q 021372 151 YGFLAENAVFVEMCREHGINFI 172 (313)
Q Consensus 151 ~g~~~e~~~~~~~l~~~gi~~~ 172 (313)
.. ..........+.+.|++++
T Consensus 70 tp-~~~h~~~~~~~l~~g~~v~ 90 (120)
T PF01408_consen 70 TP-PSSHAEIAKKALEAGKHVL 90 (120)
T ss_dssp SS-GGGHHHHHHHHHHTTSEEE
T ss_pred cC-CcchHHHHHHHHHcCCEEE
Confidence 42 2234556666667888775
No 215
>PRK06138 short chain dehydrogenase; Provisional
Probab=92.69 E-value=0.52 Score=41.19 Aligned_cols=34 Identities=12% Similarity=0.053 Sum_probs=28.8
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+++||+| +|.+|..+++.+.+.|++|++++.+.
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~ 39 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAREGARVVVADRDA 39 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCH
Confidence 57899999 56689999999999999999886543
No 216
>PRK06482 short chain dehydrogenase; Provisional
Probab=92.68 E-value=0.52 Score=42.07 Aligned_cols=35 Identities=6% Similarity=-0.010 Sum_probs=29.5
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
|.+++||+| +|.+|..+++.|.+.|++|+++..+.
T Consensus 1 m~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~ 36 (276)
T PRK06482 1 MSKTWFITGASSGFGRGMTERLLARGDRVAATVRRP 36 (276)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 357899999 57799999999999999999886543
No 217
>PRK06139 short chain dehydrogenase; Provisional
Probab=92.67 E-value=0.36 Score=44.86 Aligned_cols=35 Identities=9% Similarity=0.047 Sum_probs=29.6
Q ss_pred cccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 70 ~~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
..+++||+|+ +.+|+.+++.+.+.|++|++++.+.
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~ 41 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARDE 41 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3578999994 6789999999999999999886544
No 218
>PRK07063 short chain dehydrogenase; Provisional
Probab=92.66 E-value=0.57 Score=41.38 Aligned_cols=34 Identities=15% Similarity=0.100 Sum_probs=29.0
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~ 41 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGAAVALADLDA 41 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 57899999 55689999999999999999886543
No 219
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=92.58 E-value=0.58 Score=41.00 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=29.8
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID 105 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~ 105 (313)
.+++||+| +|.+|..+++.+.+.|++|++++.++.
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~ 39 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGAKVVIADLNDE 39 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 47899999 677899999999999999999865543
No 220
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=92.57 E-value=0.63 Score=40.43 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=29.5
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
|++++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus 1 ~~k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~ 36 (245)
T PRK12824 1 MKKIALVTGAKRGIGSAIARELLNDGYRVIATYFSG 36 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCc
Confidence 357899998 66689999999999999999986553
No 221
>PRK07454 short chain dehydrogenase; Provisional
Probab=92.54 E-value=0.56 Score=40.84 Aligned_cols=34 Identities=12% Similarity=0.073 Sum_probs=29.2
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
++++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~ 40 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGWDLALVARSQ 40 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 57899999 47789999999999999999986543
No 222
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=92.52 E-value=0.66 Score=40.88 Aligned_cols=35 Identities=9% Similarity=0.005 Sum_probs=29.4
Q ss_pred cccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 70 ~~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
|.+++||+|+ +.+|..+++.+.+.|++|++++.+.
T Consensus 1 m~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~ 36 (259)
T PRK12384 1 MNQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINS 36 (259)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4678999994 5689999999999999999887543
No 223
>PLN00198 anthocyanidin reductase; Provisional
Probab=92.50 E-value=0.73 Score=42.57 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=28.9
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
+++|||+| +|.+|..+++.|.+.|++|+++..+.
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~ 43 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDP 43 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCC
Confidence 67899999 66789999999999999998775443
No 224
>PRK07576 short chain dehydrogenase; Provisional
Probab=92.45 E-value=0.54 Score=41.81 Aligned_cols=34 Identities=9% Similarity=0.165 Sum_probs=29.2
Q ss_pred ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+++||+|+ +.+|..+++.+.+.|++|++++.+.
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~ 43 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQ 43 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 578999994 6789999999999999999986543
No 225
>PRK06196 oxidoreductase; Provisional
Probab=92.44 E-value=0.38 Score=44.07 Aligned_cols=34 Identities=9% Similarity=0.153 Sum_probs=28.9
Q ss_pred ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.++|||+|+ +.+|..+++.+.+.|++|++++.+.
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~ 60 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRP 60 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 478999994 6689999999999999999886543
No 226
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=92.44 E-value=0.95 Score=43.82 Aligned_cols=90 Identities=13% Similarity=0.174 Sum_probs=58.3
Q ss_pred ccEEEEEcCCHhHHHHHHHHHH---cCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372 71 QEKILVANRGEIAVRVIRTAHE---MGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~---~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v 147 (313)
.+++||+|+|..+..+++++++ .|++++.+-++..... ....... -..+.+.+.++++++++|.|
T Consensus 125 ~~rvLIvGag~~a~~l~~~L~~~~~~g~~vvG~idd~~~~~--~~i~g~p----------Vlg~~~~l~~~i~~~~id~V 192 (445)
T TIGR03025 125 LRRVLIVGTGEAARELAAALSRNPDLGYRVVGFVDDRPSDR--VEVAGLP----------VLGKLDDLVELVRAHRVDEV 192 (445)
T ss_pred CCcEEEEECCHHHHHHHHHHhhCccCCeEEEEEEeCCcccc--cccCCCc----------ccCCHHHHHHHHHhCCCCEE
Confidence 4679999999999999999975 4788876543321111 1111111 12457789999999999988
Q ss_pred eeccCcCccc--HHHHHHHHHcCCcee
Q 021372 148 HPGYGFLAEN--AVFVEMCREHGINFI 172 (313)
Q Consensus 148 ip~~g~~~e~--~~~~~~l~~~gi~~~ 172 (313)
+.......+. ..+.+.+++.|+.+.
T Consensus 193 iIa~p~~~~~~~~~ll~~~~~~gv~V~ 219 (445)
T TIGR03025 193 IIALPLSEEARILELLLQLRDLGVDVR 219 (445)
T ss_pred EEecCcccHHHHHHHHHHHHhcCCEEE
Confidence 8764322222 356677778887663
No 227
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=92.43 E-value=0.57 Score=43.03 Aligned_cols=34 Identities=3% Similarity=0.191 Sum_probs=29.0
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
.++++||+| .+.+|..+++.|.+.|++|++++.+
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~ 39 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGWHVIMACRN 39 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECC
Confidence 467899999 5668999999999999999988644
No 228
>PRK07102 short chain dehydrogenase; Provisional
Probab=92.43 E-value=0.7 Score=40.32 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=29.0
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
|++++|+| ++.+|..+++.+.+.|++|++++.+.
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~ 35 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGARLYLAARDV 35 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 36899999 67789999999999999999987554
No 229
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.42 E-value=2.5 Score=41.11 Aligned_cols=112 Identities=12% Similarity=0.149 Sum_probs=64.5
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~ 150 (313)
.++|+|+|-|..|+.+++.|++ |.+|++.|...........+.+..+ .. . ...+.+ .++|.|+..
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~-~~------~-~~~~~~------~~~d~vV~S 70 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNA-IA------A-LSDSRW------QNLDKIVLS 70 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCce-ec------c-CChhHh------hCCCEEEEC
Confidence 5789999999999999999995 9999998733222111111111111 21 0 011111 357888876
Q ss_pred cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhC-C---------------HHHHHHHHHHCCCCC
Q 021372 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMG-D---------------KSTARETMKNAGVPT 199 (313)
Q Consensus 151 ~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~-D---------------K~~~~~~l~~~Gip~ 199 (313)
.+....+.. ...+.+.|++++ ...+.+.... + +....++|+..|..+
T Consensus 71 PgI~~~~p~-~~~a~~~gi~v~-~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~ 133 (454)
T PRK01368 71 PGIPLTHEI-VKIAKNFNIPIT-SDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNGLDY 133 (454)
T ss_pred CCCCCCCHH-HHHHHHCCCcee-cHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCe
Confidence 654444443 344457789887 3555542222 2 234567778877653
No 230
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.42 E-value=0.61 Score=45.94 Aligned_cols=51 Identities=18% Similarity=0.167 Sum_probs=39.8
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEc
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI 120 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v 120 (313)
...+|+|+|+|..|+..+..++.+|.+|+++|.++........+-..++.+
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i 214 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLEL 214 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEe
Confidence 478999999999999999999999999999877666555544444443434
No 231
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=92.41 E-value=0.58 Score=41.28 Aligned_cols=33 Identities=21% Similarity=0.161 Sum_probs=28.6
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
.+++||+| ++.+|..+++.|.+.|++|++++.+
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~ 41 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRS 41 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 57899999 5668999999999999999988654
No 232
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=92.41 E-value=1.2 Score=41.54 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=30.2
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCC-cEEEEecCC
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTI 104 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~~ 104 (313)
..++|||+|.|.+|..+++.|.+.|+ +++++|.|.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 46789999999999999999999999 677786553
No 233
>PLN02778 3,5-epimerase/4-reductase
Probab=92.35 E-value=0.6 Score=42.62 Aligned_cols=30 Identities=23% Similarity=0.170 Sum_probs=26.2
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEE
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVA 99 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~ 99 (313)
+.+||||+| +|.+|..+++.|.+.|++|++
T Consensus 8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~ 38 (298)
T PLN02778 8 ATLKFLIYGKTGWIGGLLGKLCQEQGIDFHY 38 (298)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCEEEE
Confidence 357899999 677999999999999999864
No 234
>PRK09291 short chain dehydrogenase; Provisional
Probab=92.33 E-value=0.48 Score=41.64 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=29.0
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
|++++||+| +|.+|..+++.|.+.|++|+++..+
T Consensus 1 m~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~ 35 (257)
T PRK09291 1 MSKTILITGAGSGFGREVALRLARKGHNVIAGVQI 35 (257)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 467899999 5678999999999999999987644
No 235
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=92.30 E-value=0.97 Score=43.71 Aligned_cols=116 Identities=20% Similarity=0.241 Sum_probs=71.3
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhh-hcCce--EEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK-LADES--VCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~-~ad~~--~~v~~~~~~~~~~~~~~l~~~~~~~~id~v 147 (313)
++||+|+|-|..|+.+++.|++.|++|++.|..+........ ..... +..+ ..+. ..-..+|.|
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g-------~~~~------~~~~~~d~v 73 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELG-------SHDD------EDLAEFDLV 73 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecC-------ccch------hccccCCEE
Confidence 789999999999999999999999999999866655211111 11111 1111 0110 112457888
Q ss_pred eeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHh------------CCHHHH----HHHHHHCCCCCCC
Q 021372 148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIM------------GDKSTA----RETMKNAGVPTVP 201 (313)
Q Consensus 148 ip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~------------~DK~~~----~~~l~~~Gip~p~ 201 (313)
+...|.-..+. ..+...+.|+++.| +.+..... .-|..+ .++|++.|.++.-
T Consensus 74 V~SPGi~~~~p-~v~~A~~~gi~i~~-dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~l 141 (448)
T COG0771 74 VKSPGIPPTHP-LVEAAKAAGIEIIG-DIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALL 141 (448)
T ss_pred EECCCCCCCCH-HHHHHHHcCCcEEe-HHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCcee
Confidence 87665444444 44555678988885 44443332 345443 5678888887653
No 236
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=92.29 E-value=0.7 Score=40.39 Aligned_cols=32 Identities=16% Similarity=0.137 Sum_probs=27.5
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEe
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY 101 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~ 101 (313)
|++++||+| ++.+|..+++.+.+.|++|+++.
T Consensus 1 m~k~ilItGas~giG~~la~~l~~~g~~v~~~~ 33 (248)
T PRK06947 1 MRKVVLITGASRGIGRATAVLAAARGWSVGINY 33 (248)
T ss_pred CCcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 578999999 55689999999999999988764
No 237
>PRK06179 short chain dehydrogenase; Provisional
Probab=92.28 E-value=0.73 Score=40.94 Aligned_cols=34 Identities=12% Similarity=0.075 Sum_probs=29.0
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.++++|+| +|.+|..+++.|.+.|++|++++.+.
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~ 38 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGYRVFGTSRNP 38 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 46799999 56689999999999999999887654
No 238
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=92.27 E-value=0.46 Score=43.79 Aligned_cols=72 Identities=11% Similarity=-0.032 Sum_probs=45.0
Q ss_pred cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhh----hhhcC---ceEEccCCCCCCCcCCHHHHHHHHHhcC
Q 021372 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH----VKLAD---ESVCIGEAPSSQSYLLIPNVLSAAISRG 143 (313)
Q Consensus 72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~----~~~ad---~~~~v~~~~~~~~~~~~~~l~~~~~~~~ 143 (313)
++|||+| .|.+|..+++.|.+.|++|++++......... ..... ..+.. +..+.+.+.+++...+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------Dl~d~~~~~~~~~~~~ 73 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEG-------DIRNEALLTEILHDHA 73 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhcCCCceEEEc-------cCCCHHHHHHHHhcCC
Confidence 3799999 58899999999999999999885322111100 01111 11211 2345566767666667
Q ss_pred CCEEeec
Q 021372 144 CTMLHPG 150 (313)
Q Consensus 144 id~vip~ 150 (313)
+|+|+-.
T Consensus 74 ~d~vvh~ 80 (338)
T PRK10675 74 IDTVIHF 80 (338)
T ss_pred CCEEEEC
Confidence 9988754
No 239
>PRK05876 short chain dehydrogenase; Provisional
Probab=92.26 E-value=0.62 Score=41.86 Aligned_cols=34 Identities=9% Similarity=-0.017 Sum_probs=29.0
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
+.+++||+| ++.+|..+++.|.+.|++|++++.+
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~ 39 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRGARVVLGDVD 39 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 367899999 6668999999999999999888644
No 240
>PRK06940 short chain dehydrogenase; Provisional
Probab=92.23 E-value=1.1 Score=40.07 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=29.2
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
|.|.+||.|++.+|..+++.+. .|++|++++.+.
T Consensus 1 ~~k~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~~ 34 (275)
T PRK06940 1 MKEVVVVIGAGGIGQAIARRVG-AGKKVLLADYNE 34 (275)
T ss_pred CCCEEEEECCChHHHHHHHHHh-CCCEEEEEeCCH
Confidence 5788999999899999999996 799999986543
No 241
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=92.23 E-value=0.5 Score=43.04 Aligned_cols=60 Identities=13% Similarity=0.192 Sum_probs=42.7
Q ss_pred cEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372 72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (313)
Q Consensus 72 ~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~ 150 (313)
+||||+|+ |.+|.++++.|.+.| +|++++.... .+. .+..+.+.+.++.+..++|+|+-.
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~-----------~~~-------~Dl~d~~~~~~~~~~~~~D~Vih~ 61 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHST-----------DYC-------GDFSNPEGVAETVRKIRPDVIVNA 61 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEEEeccccc-----------ccc-------CCCCCHHHHHHHHHhcCCCEEEEC
Confidence 37999995 889999999999999 7877642210 111 124566777787877789988843
No 242
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.17 E-value=2.4 Score=40.84 Aligned_cols=114 Identities=19% Similarity=0.227 Sum_probs=66.0
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhh-hhhcCc--eEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-VKLADE--SVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~-~~~ad~--~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v 147 (313)
.++++|+|.|.+|..+++.|.+.|++|++.+.+....... ..+... .+..+ .+...+. ..++|.|
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~--------~~~~~~~----~~~~d~v 72 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICG--------SHPLELL----DEDFDLM 72 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeC--------CCCHHHh----cCcCCEE
Confidence 5789999999999999999999999999986543221111 112111 11111 1111211 1248888
Q ss_pred eeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHh-----------CCH----HHHHHHHHHCCCC
Q 021372 148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIM-----------GDK----STARETMKNAGVP 198 (313)
Q Consensus 148 ip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~-----------~DK----~~~~~~l~~~Gip 198 (313)
+...+....+ ...+.+.+.|+++. ...+..... .-| ....++|+..|..
T Consensus 73 V~s~gi~~~~-~~~~~a~~~~i~v~-~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~ 136 (447)
T PRK02472 73 VKNPGIPYTN-PMVEKALEKGIPII-TEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQH 136 (447)
T ss_pred EECCCCCCCC-HHHHHHHHCCCcEE-eHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCCC
Confidence 8765433333 34455567899887 345543332 223 3556677777754
No 243
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=92.15 E-value=0.73 Score=38.05 Aligned_cols=34 Identities=15% Similarity=0.110 Sum_probs=28.0
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
|++|.++|-|..|..+++.|.+.|++|.+++.++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 5899999999999999999999999999886443
No 244
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=92.15 E-value=0.9 Score=39.09 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=29.4
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCC-cEEEEecC
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGI-PCVAVYST 103 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~ 103 (313)
...+|+|+|.|.+|..+++.|.+.|+ +++++|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 36789999999999999999999999 67777544
No 245
>PRK05875 short chain dehydrogenase; Provisional
Probab=92.12 E-value=0.75 Score=40.99 Aligned_cols=34 Identities=18% Similarity=0.105 Sum_probs=29.4
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+++||+| +|.+|..+++.|.+.|++|++++.+.
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~ 41 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNP 41 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 58899999 47799999999999999999886543
No 246
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=92.09 E-value=1 Score=39.41 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=29.1
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus 8 ~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~ 42 (252)
T PRK08220 8 GKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF 42 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch
Confidence 57899999 56689999999999999999986543
No 247
>PRK08226 short chain dehydrogenase; Provisional
Probab=92.07 E-value=0.43 Score=42.19 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=29.0
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
..+++||+| ++.+|..+++.|.+.|++|++++.+
T Consensus 5 ~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~ 39 (263)
T PRK08226 5 TGKTALITGALQGIGEGIARVFARHGANLILLDIS 39 (263)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCC
Confidence 358899999 6668999999999999999988654
No 248
>PRK12743 oxidoreductase; Provisional
Probab=92.07 E-value=0.8 Score=40.39 Aligned_cols=33 Identities=9% Similarity=0.056 Sum_probs=28.1
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS 102 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~ 102 (313)
|++++||+| ++.+|..+++.+.+.|++|+++..
T Consensus 1 ~~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~ 34 (256)
T PRK12743 1 MAQVAIVTASDSGIGKACALLLAQQGFDIGITWH 34 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 467899999 556899999999999999988753
No 249
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=92.06 E-value=0.69 Score=42.66 Aligned_cols=93 Identities=18% Similarity=0.252 Sum_probs=54.8
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCc-EEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~-vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip 149 (313)
..+|||.|+|.+|..+++.++.+|.+ |++++.+.........+....+ ++. . + .. .+.+.++....++|.++-
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~-i~~--~-~-~~-~~~~~~~~~~~~~d~vid 237 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFV-INS--G-Q-DD-VQEIRELTSGAGADVAIE 237 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEE-EcC--C-c-ch-HHHHHHHhCCCCCCEEEE
Confidence 57899999999999999999999999 8887654443332222222222 221 1 1 11 445555555557999996
Q ss_pred ccCcCcccHHHHHHHHHcCC
Q 021372 150 GYGFLAENAVFVEMCREHGI 169 (313)
Q Consensus 150 ~~g~~~e~~~~~~~l~~~gi 169 (313)
..+.........+.+...|.
T Consensus 238 ~~g~~~~~~~~~~~l~~~G~ 257 (339)
T cd08239 238 CSGNTAARRLALEAVRPWGR 257 (339)
T ss_pred CCCCHHHHHHHHHHhhcCCE
Confidence 54322111223455555554
No 250
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.05 E-value=1.1 Score=43.79 Aligned_cols=86 Identities=15% Similarity=0.210 Sum_probs=51.5
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCc---eEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADE---SVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~---~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v 147 (313)
+++|+|+|.|.+|+.+++.|.+.|+.|++.+.+.... ..+.++ .+..+ ..+.+.+ .++|.|
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~---~~~l~~~gi~~~~~-------~~~~~~~------~~~d~v 78 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETAR---HKLIEVTGVADIST-------AEASDQL------DSFSLV 78 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHH---HHHHHhcCcEEEeC-------CCchhHh------cCCCEE
Confidence 4679999999999999999999999888876433221 111111 11111 0111222 247888
Q ss_pred eeccCcCcccHHHHHHHHHcCCceeC
Q 021372 148 HPGYGFLAENAVFVEMCREHGINFIG 173 (313)
Q Consensus 148 ip~~g~~~e~~~~~~~l~~~gi~~~g 173 (313)
+...+....+.. ...+.+.|+++++
T Consensus 79 V~Spgi~~~~p~-~~~a~~~gi~v~~ 103 (473)
T PRK00141 79 VTSPGWRPDSPL-LVDAQSQGLEVIG 103 (473)
T ss_pred EeCCCCCCCCHH-HHHHHHCCCceee
Confidence 766543334433 3445678888874
No 251
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.03 E-value=0.77 Score=40.44 Aligned_cols=33 Identities=12% Similarity=0.210 Sum_probs=28.1
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
.+++||+| ++.+|..+++.+.+.|++|+++...
T Consensus 7 ~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~ 40 (255)
T PRK06463 7 GKVALITGGTRGIGRAIAEAFLREGAKVAVLYNS 40 (255)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 57899999 5668999999999999999887543
No 252
>PRK07814 short chain dehydrogenase; Provisional
Probab=92.03 E-value=0.7 Score=41.00 Aligned_cols=34 Identities=12% Similarity=0.104 Sum_probs=28.9
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~ 44 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTE 44 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 57899999 45689999999999999999887543
No 253
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=91.99 E-value=0.64 Score=43.97 Aligned_cols=71 Identities=11% Similarity=0.094 Sum_probs=45.0
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~ 150 (313)
..+|+|+|.|..|+.+++.|+++|.+|++++.++.............+... +.+.+.+.+.+. +.|+|+.+
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~-------~~~~~~l~~~l~--~aDvVI~a 237 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTR-------YSNAYEIEDAVK--RADLLIGA 237 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEec-------cCCHHHHHHHHc--cCCEEEEc
Confidence 467999999999999999999999998888654432211111111112111 233455666653 57999865
No 254
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=91.99 E-value=0.87 Score=40.19 Aligned_cols=33 Identities=6% Similarity=0.027 Sum_probs=28.9
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
.+++||+| ++.+|..+++.+.+.|++|++++.+
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG 48 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 58899999 5668999999999999999988655
No 255
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.93 E-value=0.65 Score=41.47 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=28.4
Q ss_pred ccEEEEEcCC---HhHHHHHHHHHHcCCcEEEEecC
Q 021372 71 QEKILVANRG---EIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 71 ~~~ILIig~g---~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
.+++||+|++ .+|+.+++.+.+.|++|++++.+
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~ 41 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN 41 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc
Confidence 5789999975 58999999999999999887643
No 256
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=91.92 E-value=0.77 Score=43.48 Aligned_cols=115 Identities=19% Similarity=0.274 Sum_probs=67.4
Q ss_pred EEEEcCCHhHHHHHHHHHHcC-C-cEEEEecCCCcchhhhh--h--cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372 74 ILVANRGEIAVRVIRTAHEMG-I-PCVAVYSTIDKDALHVK--L--ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (313)
Q Consensus 74 ILIig~g~~a~~v~~al~~~G-~-~vi~v~~~~~~~~~~~~--~--ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v 147 (313)
|+|+|+|..|..+++.|.+.+ + ++++.+.+......... . .-....++ ..+.+.+.+++++ .|+|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d-------~~~~~~l~~~~~~--~dvV 71 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVD-------VNDPESLAELLRG--CDVV 71 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE---------TTTHHHHHHHHTT--SSEE
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEe-------cCCHHHHHHHHhc--CCEE
Confidence 799999999999999999986 4 67777655443222111 1 11223232 3566777887755 5999
Q ss_pred eeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCC
Q 021372 148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPG 202 (313)
Q Consensus 148 ip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~ 202 (313)
+...+.. ....+++.+.+.|++++-.+. ....-....+.++++|+.....
T Consensus 72 in~~gp~-~~~~v~~~~i~~g~~yvD~~~----~~~~~~~l~~~a~~~g~~~l~~ 121 (386)
T PF03435_consen 72 INCAGPF-FGEPVARACIEAGVHYVDTSY----VTEEMLALDEEAKEAGVTALPG 121 (386)
T ss_dssp EE-SSGG-GHHHHHHHHHHHT-EEEESS-----HHHHHHHCHHHHHHTTSEEE-S
T ss_pred EECCccc-hhHHHHHHHHHhCCCeeccch----hHHHHHHHHHHHHhhCCEEEeC
Confidence 9775433 445788888899999983222 1111222345566788776655
No 257
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.92 E-value=3.8 Score=39.58 Aligned_cols=112 Identities=16% Similarity=0.193 Sum_probs=66.8
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcC---c-eEEccCCCCCCCcCCHHHHHHHHHhcCCCE
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLAD---E-SVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad---~-~~~v~~~~~~~~~~~~~~l~~~~~~~~id~ 146 (313)
.++|+|+|.|.+|..+++.|.+.|++|++.+..+.... ...+.. . .+..+ ... +.+. .++|.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~-~~~l~~~~~gi~~~~g-------~~~-~~~~-----~~~d~ 70 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPER-VAQIGKMFDGLVFYTG-------RLK-DALD-----NGFDI 70 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchh-HHHHhhccCCcEEEeC-------CCC-HHHH-----hCCCE
Confidence 57899999999999999999999999998875543211 111111 1 11111 011 1111 35788
Q ss_pred EeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhC--------------C----HHHHHHHHHHCCCC
Q 021372 147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMG--------------D----KSTARETMKNAGVP 198 (313)
Q Consensus 147 vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~--------------D----K~~~~~~l~~~Gip 198 (313)
|+...+....+..+ ..+.+.|+++. ...+.+.... - +....++|+..|..
T Consensus 71 vv~spgi~~~~p~~-~~a~~~~i~v~-~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~ 138 (445)
T PRK04308 71 LALSPGISERQPDI-EAFKQNGGRVL-GDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLD 138 (445)
T ss_pred EEECCCCCCCCHHH-HHHHHcCCcEE-EhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCC
Confidence 88776544444444 33456788887 4555543321 1 34556777888865
No 258
>PRK06172 short chain dehydrogenase; Provisional
Probab=91.89 E-value=0.89 Score=39.90 Aligned_cols=35 Identities=14% Similarity=0.047 Sum_probs=29.6
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID 105 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~ 105 (313)
.+++||+| ++.+|..+++.+.+.|++|++++.+..
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~ 42 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGAKVVVADRDAA 42 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 47899999 566899999999999999998875543
No 259
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.88 E-value=1.5 Score=40.37 Aligned_cols=51 Identities=10% Similarity=0.062 Sum_probs=39.1
Q ss_pred CccccCCCCCcCccccc-------ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 54 KLKRRCGGGGALKVTCR-------QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 54 ~~~~~~~~~~~~~~~~~-------~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
..+.|-=-+|.+..++| .++|.|+|.|.+|...++-++.+|++|++++...
T Consensus 158 ~~aAPlLCaGITvYspLk~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~ 215 (360)
T KOG0023|consen 158 ASAAPLLCAGITVYSPLKRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSS 215 (360)
T ss_pred hhccchhhcceEEeehhHHcCCCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCc
Confidence 33444445566666665 4689999977799999999999999999998764
No 260
>PRK07806 short chain dehydrogenase; Provisional
Probab=91.85 E-value=0.93 Score=39.57 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=28.3
Q ss_pred ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecC
Q 021372 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
.+++||+|+ |.+|..+++.|.+.|++|+++..+
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~ 39 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQ 39 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 578999994 779999999999999999887543
No 261
>PRK09126 hypothetical protein; Provisional
Probab=91.85 E-value=0.25 Score=46.69 Aligned_cols=36 Identities=14% Similarity=0.208 Sum_probs=31.8
Q ss_pred ccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 69 ~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
||...|+|+|+|+.|..++.+|.+.|++|++++..+
T Consensus 1 ~~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 36 (392)
T PRK09126 1 MMHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQP 36 (392)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 345679999999999999999999999999997554
No 262
>PRK06523 short chain dehydrogenase; Provisional
Probab=91.82 E-value=0.77 Score=40.47 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=29.1
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus 9 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~ 43 (260)
T PRK06523 9 GKRALVTGGTKGIGAATVARLLEAGARVVTTARSR 43 (260)
T ss_pred CCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCCh
Confidence 57899999 56689999999999999999986543
No 263
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=91.80 E-value=1 Score=35.79 Aligned_cols=34 Identities=18% Similarity=0.357 Sum_probs=28.5
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCc-EEEEecCC
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~-vi~v~~~~ 104 (313)
.+||+|+|.|.+|..+++.|.+.|+. ++++|.+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 47899999999999999999999994 77776543
No 264
>PRK08263 short chain dehydrogenase; Provisional
Probab=91.79 E-value=0.49 Score=42.30 Aligned_cols=35 Identities=14% Similarity=0.056 Sum_probs=29.4
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
|.+++||+| +|.+|..+++.+.+.|++|++++.+.
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~ 37 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARDT 37 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCH
Confidence 457899999 66689999999999999999886543
No 265
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=91.78 E-value=2.6 Score=37.31 Aligned_cols=120 Identities=11% Similarity=0.050 Sum_probs=65.3
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcE-EEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPC-VAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~v-i~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip 149 (313)
..+|+|+|.|.+|..+++.|.+.|+.- +++|.+.-.. +.+..+.++.. .+. ...-.+.+.+.+++...+.-+-
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~---sNL~RQ~l~~~--~di-G~~Ka~~a~~~l~~inp~v~i~ 97 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSL---SNLQRQVLHSD--ANI-GQPKVESAKDALTQINPHIAIN 97 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccc---cCcccceeeeH--hhC-CCcHHHHHHHHHHHHCCCcEEE
Confidence 578999999999999999999999864 4554433211 23333333211 011 1122455566666666655443
Q ss_pred ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCC
Q 021372 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVP 201 (313)
Q Consensus 150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~ 201 (313)
.+....+.....+.+....+-+-..+... .+....+.+.++|+|..-
T Consensus 98 ~~~~~i~~~~~~~~~~~~DlVvd~~D~~~-----~r~~ln~~~~~~~ip~v~ 144 (240)
T TIGR02355 98 PINAKLDDAELAALIAEHDIVVDCTDNVE-----VRNQLNRQCFAAKVPLVS 144 (240)
T ss_pred EEeccCCHHHHHHHhhcCCEEEEcCCCHH-----HHHHHHHHHHHcCCCEEE
Confidence 33211111234445555555443222211 255566777888887653
No 266
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=91.76 E-value=0.58 Score=37.44 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=28.4
Q ss_pred ccEEEEEcCCHh----HHHHHHHHHHcCCcEEEEec
Q 021372 71 QEKILVANRGEI----AVRVIRTAHEMGIPCVAVYS 102 (313)
Q Consensus 71 ~~~ILIig~g~~----a~~v~~al~~~G~~vi~v~~ 102 (313)
.|+|.++|.+.. ++.+.+.|.+.||+|+.+++
T Consensus 16 ~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP 51 (140)
T COG1832 16 AKTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNP 51 (140)
T ss_pred CceEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCc
Confidence 588999997774 99999999999999999954
No 267
>PRK07890 short chain dehydrogenase; Provisional
Probab=91.64 E-value=0.65 Score=40.80 Aligned_cols=34 Identities=15% Similarity=0.128 Sum_probs=29.0
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~ 39 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTA 39 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCH
Confidence 57899999 56689999999999999999886543
No 268
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=91.63 E-value=0.64 Score=41.64 Aligned_cols=57 Identities=12% Similarity=0.091 Sum_probs=41.8
Q ss_pred EEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeecc
Q 021372 73 KILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (313)
Q Consensus 73 ~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~ 151 (313)
||||+| .|.+|..+++.|.+.|++|+++... .. +..+.+.+.+++...++|.|+-..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~---------------~~-------d~~~~~~~~~~~~~~~~d~vi~~a 58 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSS---------------QL-------DLTDPEALERLLRAIRPDAVVNTA 58 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc---------------cc-------CCCCHHHHHHHHHhCCCCEEEECC
Confidence 589999 5889999999999999999887531 01 123456677777666788887543
No 269
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.60 E-value=0.75 Score=40.76 Aligned_cols=34 Identities=32% Similarity=0.340 Sum_probs=28.8
Q ss_pred cccEEEEEcC---CHhHHHHHHHHHHcCCcEEEEecC
Q 021372 70 RQEKILVANR---GEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 70 ~~~~ILIig~---g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
..+++||+|+ +.+|..+++.|.+.|++|++.+.+
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~ 42 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFG 42 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCc
Confidence 3578999996 578999999999999999887543
No 270
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=91.59 E-value=0.3 Score=46.42 Aligned_cols=72 Identities=22% Similarity=0.387 Sum_probs=55.5
Q ss_pred HHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEE--eCCHHHHHHHHHHHHHHHHhcCCCCcEEEee
Q 021372 193 KNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRL--AKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK 270 (313)
Q Consensus 193 ~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~--v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe 270 (313)
++.-++.++|| .|...++....+.++. -+||||..|+||-|+.+ .-+.+|+.+..+.+.... .+++.|+
T Consensus 340 e~~lL~nv~T~--~c~~~~el~~VL~~l~-~lViK~~~~~gg~~~lvGpa~s~~e~a~~~~~i~a~p------~~~IaQ~ 410 (488)
T COG2308 340 EEPLLPNVPTY--WCGEPDELEHVLANLS-ELVIKPVEGSGGYGMLVGPAASKAELAAFAERIKADP------ENYIAQP 410 (488)
T ss_pred cccccCCCCee--ecCCHHHHHHHHhchh-hheEeeeccCCCCcceeccccCHHHHHHHHHHHHhCh------hhhcccc
Confidence 45678889997 8888899888888775 68999999998888766 567788888888877653 5566666
Q ss_pred ccC
Q 021372 271 YVQ 273 (313)
Q Consensus 271 ~I~ 273 (313)
-+.
T Consensus 411 ~~~ 413 (488)
T COG2308 411 VLQ 413 (488)
T ss_pred ccc
Confidence 543
No 271
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=91.57 E-value=1.6 Score=42.49 Aligned_cols=111 Identities=14% Similarity=0.134 Sum_probs=66.4
Q ss_pred ccEEEEEcCCHhHHH-HHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372 71 QEKILVANRGEIAVR-VIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (313)
Q Consensus 71 ~~~ILIig~g~~a~~-v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip 149 (313)
.++|+|+|-|.+|.. +++.|+++|++|++.|....... ..+...-+.+.. .. ..+.+ .++|.|+.
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~--~~l~~~gi~~~~-----~~-~~~~~------~~~d~vv~ 72 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVT--QRLLELGAIIFI-----GH-DAENI------KDADVVVY 72 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHH--HHHHHCCCEEeC-----CC-CHHHC------CCCCEEEE
Confidence 468999999999999 79999999999999875443211 122211111100 01 11221 25888887
Q ss_pred ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHh-CC---------------HHHHHHHHHHCCC
Q 021372 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIM-GD---------------KSTARETMKNAGV 197 (313)
Q Consensus 150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~-~D---------------K~~~~~~l~~~Gi 197 (313)
..+....+..+ ..+.+.|++++ ...+.+... .+ +....++|+..|.
T Consensus 73 spgi~~~~~~~-~~a~~~~i~i~-~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~ 134 (461)
T PRK00421 73 SSAIPDDNPEL-VAARELGIPVV-RRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAGL 134 (461)
T ss_pred CCCCCCCCHHH-HHHHHCCCcEE-eHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 76544444444 44457899988 455554333 22 2345678888885
No 272
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=91.56 E-value=1.6 Score=42.59 Aligned_cols=86 Identities=10% Similarity=0.052 Sum_probs=57.4
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHc---CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372 71 QEKILVANRGEIAVRVIRTAHEM---GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~---G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v 147 (313)
.+++||+|+|..|..+++++++. |++++.+-++.. .. . ..+ .-+.+.+.+.++++++++|.|
T Consensus 143 ~rrVLIvGaG~~g~~l~~~L~~~~~~g~~vVGfiDdd~-~~------g--~~V------pvlG~~~dL~~~v~~~~IdeV 207 (463)
T PRK10124 143 KRMVAVAGDLPAGQMLLESFRNEPWLGFEVVGVYHDPK-PG------G--VSN------DWAGNLQQLVEDAKAGKIHNV 207 (463)
T ss_pred CCcEEEEECCHHHHHHHHHHhcCccCCeEEEEEEeCCc-cc------c--CCC------CcCCCHHHHHHHHHhCCCCEE
Confidence 46799999999999999999764 788876543321 00 0 001 013457788999999999988
Q ss_pred eeccCcCccc--HHHHHHHHHcCCce
Q 021372 148 HPGYGFLAEN--AVFVEMCREHGINF 171 (313)
Q Consensus 148 ip~~g~~~e~--~~~~~~l~~~gi~~ 171 (313)
+.......+. ..+.+.+++.++.+
T Consensus 208 iIAip~~~~~~l~ell~~~~~~~v~V 233 (463)
T PRK10124 208 YIAMSMCDGARVKKLVRQLADTTCSV 233 (463)
T ss_pred EEeCCCcchHHHHHHHHHHHHcCCeE
Confidence 8765333222 34556677778765
No 273
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=91.55 E-value=0.74 Score=38.28 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=29.8
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~ 105 (313)
..+|+|+|+|..|...++.|+.+|+++++++..+.
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~ 54 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPE 54 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHH
Confidence 57899999999999999999999999999976544
No 274
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=91.54 E-value=3.4 Score=36.95 Aligned_cols=111 Identities=23% Similarity=0.185 Sum_probs=60.9
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcC-CcEEEEecCCCcchh-------------hhh--------hcCceEEccCCCCC
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMG-IPCVAVYSTIDKDAL-------------HVK--------LADESVCIGEAPSS 126 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G-~~vi~v~~~~~~~~~-------------~~~--------~ad~~~~v~~~~~~ 126 (313)
++.||+|+| +|.+|+.+++++.+.. +++...-..+..... ... ..+..+.+| .+.
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~ID--FT~ 78 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLID--FTT 78 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEE--CCC
Confidence 367899999 5889999999999864 565543322221110 000 001112122 111
Q ss_pred CCcCCHHHHHHHHHhcCCCEEeeccCcCcccH-HHHHHHHHcCCceeCCCHHHHHHhCCH
Q 021372 127 QSYLLIPNVLSAAISRGCTMLHPGYGFLAENA-VFVEMCREHGINFIGPNPDSIRIMGDK 185 (313)
Q Consensus 127 ~~~~~~~~l~~~~~~~~id~vip~~g~~~e~~-~~~~~l~~~gi~~~g~~~~~i~~~~DK 185 (313)
+.-...++++|.++++..|+.+.|+..+.. .+.++.+..++- +.||...-.++..|
T Consensus 79 --P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~v~vv-~a~NfSiGvnll~~ 135 (266)
T COG0289 79 --PEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEKVPVV-IAPNFSLGVNLLFK 135 (266)
T ss_pred --chhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhhCCEE-EeccchHHHHHHHH
Confidence 123456778888888999998887776653 344444443332 33555544444433
No 275
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.53 E-value=0.68 Score=41.18 Aligned_cols=79 Identities=20% Similarity=0.149 Sum_probs=45.8
Q ss_pred cccEEEEEcC---CHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhc----C-ceEEccCCCCCCCcCCHHHHHHHHHh
Q 021372 70 RQEKILVANR---GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLA----D-ESVCIGEAPSSQSYLLIPNVLSAAIS 141 (313)
Q Consensus 70 ~~~~ILIig~---g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~a----d-~~~~v~~~~~~~~~~~~~~l~~~~~~ 141 (313)
..+++||+|+ +.+|+.+++.+.+.|++|++.+...........+. . ..+.+| ..+..+++.+++.+.+
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D----v~~~~~v~~~~~~~~~ 80 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCD----VASDDEINQVFADLGK 80 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECC----CCCHHHHHHHHHHHHH
Confidence 3578999994 46899999999999999988643211111111111 1 122222 2233445556655544
Q ss_pred c--CCCEEeeccC
Q 021372 142 R--GCTMLHPGYG 152 (313)
Q Consensus 142 ~--~id~vip~~g 152 (313)
+ ++|+++-.-|
T Consensus 81 ~~g~iD~lVnnAG 93 (261)
T PRK08690 81 HWDGLDGLVHSIG 93 (261)
T ss_pred HhCCCcEEEECCc
Confidence 3 5898886543
No 276
>PRK05868 hypothetical protein; Validated
Probab=91.52 E-value=0.3 Score=46.06 Aligned_cols=35 Identities=9% Similarity=0.011 Sum_probs=31.1
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~ 105 (313)
|++|+|+|+|..|+.++..|++.|++|.+++..+.
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 46899999999999999999999999999976543
No 277
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=91.52 E-value=2.2 Score=36.58 Aligned_cols=75 Identities=12% Similarity=0.101 Sum_probs=44.2
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCc-EEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~-vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi 148 (313)
...+|+|+|.|.+|..+++.|-..|+. ++++|.+.-.. +.+...++ +.+...+-...-.+.+.+.+++.++++-+
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~---snl~rq~~-~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i 93 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVST---EDLGSNFF-LDAEVSNSGMNRAAASYEFLQELNPNVKL 93 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCCh---hcCcccEe-cccchhhcCchHHHHHHHHHHHHCCCCEE
Confidence 357899999999999999999999998 56665443211 23333333 21100111112244555666666665544
No 278
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=91.48 E-value=1 Score=41.89 Aligned_cols=33 Identities=9% Similarity=0.156 Sum_probs=29.1
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
+++|||+| .|.+|..+++.|.+.|++|++++..
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~ 48 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNF 48 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 47899999 5889999999999999999988643
No 279
>PRK05866 short chain dehydrogenase; Provisional
Probab=91.46 E-value=0.75 Score=41.81 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=29.2
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~ 74 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGATVVAVARRE 74 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 47899999 57789999999999999999986543
No 280
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=91.45 E-value=1.4 Score=42.82 Aligned_cols=89 Identities=9% Similarity=0.132 Sum_probs=56.7
Q ss_pred ccEEEEEcCCHhHHHHHHHHHH---cCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372 71 QEKILVANRGEIAVRVIRTAHE---MGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~---~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v 147 (313)
.++++|+|+|..+..+++++++ .|++++.+-++..... ....... -..+.+.+.+.++++++|.|
T Consensus 128 ~~rvLIiGag~~~~~l~~~L~~~~~~g~~vvG~idd~~~~~--~~~~gvp----------Vlg~~~dl~~~i~~~~vd~V 195 (451)
T TIGR03023 128 LRRVLIVGAGELGRRLAERLARNPELGYRVVGFFDDRPDAR--TGVRGVP----------VLGKLDDLEELIREGEVDEV 195 (451)
T ss_pred CCcEEEEeCCHHHHHHHHHHHhCccCCcEEEEEEeCCCccc--cccCCCC----------ccCCHHHHHHHHHhcCCCEE
Confidence 4779999999999999999976 3788776543321111 0111101 12456788999999999988
Q ss_pred eeccCcCcc--cHHHHHHHHHcCCce
Q 021372 148 HPGYGFLAE--NAVFVEMCREHGINF 171 (313)
Q Consensus 148 ip~~g~~~e--~~~~~~~l~~~gi~~ 171 (313)
+........ ...+.+.+++.|+.+
T Consensus 196 iIA~p~~~~~~~~~ll~~~~~~gv~V 221 (451)
T TIGR03023 196 YIALPLAAEDRILELLDALEDLTVDV 221 (451)
T ss_pred EEeeCcccHHHHHHHHHHHHhcCCEE
Confidence 876532222 134566677777755
No 281
>PRK06841 short chain dehydrogenase; Provisional
Probab=91.43 E-value=0.62 Score=40.92 Aligned_cols=34 Identities=9% Similarity=0.033 Sum_probs=29.2
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~ 49 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAAKGARVALLDRSE 49 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 57899999 57789999999999999999886544
No 282
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=91.40 E-value=0.77 Score=40.66 Aligned_cols=33 Identities=12% Similarity=0.176 Sum_probs=28.5
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
.+++||+| ++.+|..+++.+.+.|++|++++.+
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~ 38 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKS 38 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 57899999 4568999999999999999988643
No 283
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.39 E-value=0.62 Score=41.80 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=28.3
Q ss_pred ccEEEEEcCC---HhHHHHHHHHHHcCCcEEEEec
Q 021372 71 QEKILVANRG---EIAVRVIRTAHEMGIPCVAVYS 102 (313)
Q Consensus 71 ~~~ILIig~g---~~a~~v~~al~~~G~~vi~v~~ 102 (313)
.|.+||+|++ .+|+.+++.|.+.|++|++++.
T Consensus 7 ~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r 41 (271)
T PRK06505 7 GKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQ 41 (271)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecC
Confidence 5789999976 6999999999999999998753
No 284
>PRK06701 short chain dehydrogenase; Provisional
Probab=91.36 E-value=1.3 Score=40.04 Aligned_cols=34 Identities=18% Similarity=0.121 Sum_probs=29.0
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+++||+| ++.+|..+++.+.+.|++|++++...
T Consensus 46 ~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~ 80 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDE 80 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 57899999 56689999999999999999886543
No 285
>PRK06914 short chain dehydrogenase; Provisional
Probab=91.35 E-value=0.89 Score=40.60 Aligned_cols=36 Identities=8% Similarity=0.113 Sum_probs=29.9
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID 105 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~ 105 (313)
+.+++||+| +|.+|..+++.+.+.|++|++++.+++
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~ 38 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPE 38 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 357799999 567899999999999999999865543
No 286
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=91.34 E-value=0.83 Score=42.41 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=26.8
Q ss_pred cEEEEEcC-CHhHHHHHHHHHHc-CCcEEEEec
Q 021372 72 EKILVANR-GEIAVRVIRTAHEM-GIPCVAVYS 102 (313)
Q Consensus 72 ~~ILIig~-g~~a~~v~~al~~~-G~~vi~v~~ 102 (313)
++|||+|+ |.+|..+++.|.+. |++|+.++.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeC
Confidence 57999995 88999999999876 799998863
No 287
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=91.33 E-value=1.2 Score=38.73 Aligned_cols=33 Identities=24% Similarity=0.227 Sum_probs=27.8
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
.+++||+| +|.+|..+++.+.+.|+.|++.+.+
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~ 39 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQGAIVGLHGTR 39 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCC
Confidence 57899999 6778999999999999988776543
No 288
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=91.31 E-value=0.77 Score=39.85 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=30.6
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.++|||+|+|..|.+=++.+-+.|-+|+++.+..
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~ 45 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLLKAGADVTVVSPEF 45 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc
Confidence 5789999999999999999999999999996554
No 289
>PRK08163 salicylate hydroxylase; Provisional
Probab=91.26 E-value=0.34 Score=45.76 Aligned_cols=35 Identities=11% Similarity=0.122 Sum_probs=31.4
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
|..+|+|+|+|..|+.++.+|++.|++|.+++..+
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~ 37 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAA 37 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCc
Confidence 35789999999999999999999999999997654
No 290
>PRK08628 short chain dehydrogenase; Provisional
Probab=91.26 E-value=1.3 Score=38.88 Aligned_cols=36 Identities=14% Similarity=0.127 Sum_probs=29.8
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID 105 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~ 105 (313)
..+++||+| ++.+|..+++.|.+.|++|++++.+..
T Consensus 6 ~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~ 42 (258)
T PRK08628 6 KDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAP 42 (258)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChh
Confidence 357899999 556899999999999999998865443
No 291
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=91.24 E-value=1.4 Score=44.18 Aligned_cols=100 Identities=23% Similarity=0.380 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCC-----CCccEEEeCCHHHHHHHHHHHHHHH
Q 021372 183 GDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGG-----GGRGMRLAKEPDEFVKLLQQAKSEA 257 (313)
Q Consensus 183 ~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~-----gg~GV~~v~~~~el~~~~~~~~~~~ 257 (313)
.+|...+++++.+|+++|++ ...+.+++.+.++.++ |-..-. .-.||.+=.+..++.++++.+....
T Consensus 471 ~~~~e~~~~l~~~gi~~~~~---~~~~~~ea~~~a~~~~-----Kl~s~~i~hksev~gv~l~~~~~~v~~a~~~~~~~p 542 (598)
T COG1042 471 LDEPEAKELLEAYGIPVPAT---IASTLDEAVHIAESIG-----KLRSPDIDHKSEVGGVMLNRTADAVEKAADDILARP 542 (598)
T ss_pred cCchhhhhHHHHhcCccccc---ccCCHHHHHHHHHHhh-----hccCCccchhhhccceeecCcHHHHHHHHHhHhccc
Confidence 47788899999999999998 7888999999888887 433222 2234444477889999988887651
Q ss_pred HhcCCCCcEEEeeccCCCcEEEEEEEEcC-CCCEEEEee
Q 021372 258 AAAFGNDGVYLEKYVQNPRHIEFQVLADK-YGNVVHFGE 295 (313)
Q Consensus 258 ~~~~~~~~vlvEe~I~G~~e~~v~v~~d~-~G~vv~~~~ 295 (313)
..-..+++|++.. .|..+.+-.|. +|.++++++
T Consensus 543 ---a~i~g~lvq~m~~--~E~~vgv~~dp~fgp~i~~G~ 576 (598)
T COG1042 543 ---ARIAGVLVQTMAK--LELIVGVKNDPTFGPLILFGE 576 (598)
T ss_pred ---chhhhhhhHhhhh--ccceeeccCCCcchhHHHhcC
Confidence 2236789999988 77777777776 666665543
No 292
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.24 E-value=0.79 Score=40.65 Aligned_cols=79 Identities=15% Similarity=0.114 Sum_probs=46.1
Q ss_pred ccEEEEEcCC---HhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhc---CceEEccCCCCCCCcCCHHHHHHHHHhc--
Q 021372 71 QEKILVANRG---EIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLA---DESVCIGEAPSSQSYLLIPNVLSAAISR-- 142 (313)
Q Consensus 71 ~~~ILIig~g---~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~a---d~~~~v~~~~~~~~~~~~~~l~~~~~~~-- 142 (313)
.|++||+|++ .+|..+++.+.+.|++|++++.+.........+. .....+. -+..+..+++.+.+.+.+.
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~--~D~~~~~~v~~~~~~~~~~~g 87 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLP--LDVREPGQLEAVFARIAEEWG 87 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEe--cCcCCHHHHHHHHHHHHHHcC
Confidence 5789999965 6999999999999999988865432111011111 1111121 1122234455565555442
Q ss_pred CCCEEeecc
Q 021372 143 GCTMLHPGY 151 (313)
Q Consensus 143 ~id~vip~~ 151 (313)
++|+++-.-
T Consensus 88 ~ld~lv~nA 96 (258)
T PRK07533 88 RLDFLLHSI 96 (258)
T ss_pred CCCEEEEcC
Confidence 589888543
No 293
>PRK09072 short chain dehydrogenase; Provisional
Probab=91.23 E-value=0.99 Score=39.93 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=29.2
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~ 39 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGARLLLVGRNA 39 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence 57899999 57789999999999999999986543
No 294
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=91.21 E-value=0.41 Score=43.92 Aligned_cols=74 Identities=14% Similarity=0.014 Sum_probs=51.2
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchh----hhhhcC--ceEEccCCCCCCCcCCHHHHHHHHHhcC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL----HVKLAD--ESVCIGEAPSSQSYLLIPNVLSAAISRG 143 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~----~~~~ad--~~~~v~~~~~~~~~~~~~~l~~~~~~~~ 143 (313)
.++|||+| +|.+|-+.+-+|.+.|+.|+++|.-.+.... ...+.. +.+.+. .-+..|.+.|.++.+..+
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~----~~Dl~D~~~L~kvF~~~~ 77 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFV----EGDLNDAEALEKLFSEVK 77 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEE----EeccCCHHHHHHHHhhcC
Confidence 46899999 7778999999999999999999864443221 112222 212111 112466788888888899
Q ss_pred CCEEe
Q 021372 144 CTMLH 148 (313)
Q Consensus 144 id~vi 148 (313)
+|.|+
T Consensus 78 fd~V~ 82 (343)
T KOG1371|consen 78 FDAVM 82 (343)
T ss_pred CceEE
Confidence 99998
No 295
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=91.20 E-value=3 Score=43.72 Aligned_cols=110 Identities=12% Similarity=0.105 Sum_probs=65.9
Q ss_pred ccEEEEEcCCHhHHHH-HHHHHHcCCcEEEEecCCCcchhhhhhcC--ceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372 71 QEKILVANRGEIAVRV-IRTAHEMGIPCVAVYSTIDKDALHVKLAD--ESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v-~~al~~~G~~vi~v~~~~~~~~~~~~~ad--~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v 147 (313)
+++|+|+|-|.+|... ++.|+++|++|++.|....... ..+.. -.+..+ . ..+.+ .++|.|
T Consensus 4 ~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~--~~L~~~gi~~~~g-------~-~~~~~------~~~d~v 67 (809)
T PRK14573 4 SLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTV--EKLKAKGARFFLG-------H-QEEHV------PEDAVV 67 (809)
T ss_pred cceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHH--HHHHHCCCEEeCC-------C-CHHHc------CCCCEE
Confidence 4679999999999997 9999999999999875433221 12221 112121 1 11111 247888
Q ss_pred eeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHh-C-----------CH----HHHHHHHHHCCCC
Q 021372 148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIM-G-----------DK----STARETMKNAGVP 198 (313)
Q Consensus 148 ip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~-~-----------DK----~~~~~~l~~~Gip 198 (313)
+...+....+..+.. +.+.|++++ ...+.+... . -| .....+|+++|..
T Consensus 68 V~SpgI~~~~p~~~~-a~~~gi~v~-~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~~ 132 (809)
T PRK14573 68 VYSSSISKDNVEYLS-AKSRGNRLV-HRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAKKD 132 (809)
T ss_pred EECCCcCCCCHHHHH-HHHCCCcEE-eHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCCC
Confidence 876654445544444 457789887 455554322 2 23 3455677888764
No 296
>PRK09134 short chain dehydrogenase; Provisional
Probab=91.17 E-value=1.5 Score=38.72 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=28.4
Q ss_pred ccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372 69 CRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS 102 (313)
Q Consensus 69 ~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~ 102 (313)
.+.+++||+| ++.+|..+++.+.+.|++|+++..
T Consensus 7 ~~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~ 41 (258)
T PRK09134 7 AAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYN 41 (258)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 3467899999 556899999999999999987653
No 297
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=91.13 E-value=0.81 Score=40.26 Aligned_cols=34 Identities=12% Similarity=0.081 Sum_probs=29.1
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~ 44 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDP 44 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 57899999 57789999999999999999886543
No 298
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=91.13 E-value=1.2 Score=41.66 Aligned_cols=76 Identities=16% Similarity=0.125 Sum_probs=48.3
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCc-EEEEecCCCcchhhhhhc-CceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKLA-DESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~-vi~v~~~~~~~~~~~~~a-d~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi 148 (313)
..+|||.|+|.+|..+++.++.+|.+ |++++.+.........+. +..+ + .... ...+.+.+.....++|+++
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i--~--~~~~--~~~~~i~~~~~~~g~d~vi 250 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTV--N--SSGT--DPVEAIRALTGGFGADVVI 250 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEE--c--CCCc--CHHHHHHHHhCCCCCCEEE
Confidence 57899999999999999999999996 777765544333333332 3322 2 1111 1234555555445799999
Q ss_pred eccC
Q 021372 149 PGYG 152 (313)
Q Consensus 149 p~~g 152 (313)
-..|
T Consensus 251 d~~g 254 (358)
T TIGR03451 251 DAVG 254 (358)
T ss_pred ECCC
Confidence 7654
No 299
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=91.11 E-value=0.59 Score=41.06 Aligned_cols=33 Identities=15% Similarity=0.108 Sum_probs=28.0
Q ss_pred cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
++|+|+| +|.+|..+++.+.+.|++|++++.++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~ 34 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQ 34 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence 4689999 56789999999999999999986544
No 300
>PLN02253 xanthoxin dehydrogenase
Probab=91.10 E-value=1.2 Score=39.84 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=28.6
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
.+++||+| ++.+|..+++.+.+.|++|++++.+
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~ 51 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQ 51 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 57899999 5668999999999999999998654
No 301
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=91.09 E-value=0.3 Score=46.22 Aligned_cols=36 Identities=8% Similarity=0.149 Sum_probs=31.6
Q ss_pred ccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 69 ~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
+++..|+|+|+|+.|..++-+|.+.|++|.+++..+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 345689999999999999999999999999997653
No 302
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=91.08 E-value=1.2 Score=39.20 Aligned_cols=34 Identities=12% Similarity=0.083 Sum_probs=28.9
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
..+++||+| ++.+|..+++.+.+.|+++++++.+
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~ 44 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDIN 44 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 368999999 5568999999999999999888644
No 303
>PRK08251 short chain dehydrogenase; Provisional
Probab=91.07 E-value=0.95 Score=39.52 Aligned_cols=35 Identities=14% Similarity=0.180 Sum_probs=29.4
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
|.+++||+| ++.+|..+++.+.+.|++|++++.++
T Consensus 1 ~~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~ 36 (248)
T PRK08251 1 TRQKILITGASSGLGAGMAREFAAKGRDLALCARRT 36 (248)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 357899999 66689999999999999999886544
No 304
>PRK08589 short chain dehydrogenase; Validated
Probab=91.03 E-value=0.84 Score=40.77 Aligned_cols=33 Identities=12% Similarity=0.059 Sum_probs=28.9
Q ss_pred ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecC
Q 021372 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
.+++||+|+ +.+|..+++.+.+.|++|++++.+
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~ 39 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGAYVLAVDIA 39 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 578999994 668999999999999999998655
No 305
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=91.01 E-value=0.87 Score=39.77 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=28.7
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
.+++||+| ++.+|..+++.+.+.|++|++++.+
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~ 38 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEAGADIVGAGRS 38 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCc
Confidence 58899999 4678999999999999999988643
No 306
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=91.01 E-value=1.2 Score=36.52 Aligned_cols=89 Identities=10% Similarity=0.144 Sum_probs=48.1
Q ss_pred cEEEEEcCCHhHHHHHHHHHH---cCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372 72 EKILVANRGEIAVRVIRTAHE---MGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (313)
Q Consensus 72 ~~ILIig~g~~a~~v~~al~~---~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi 148 (313)
++.+++|.+..+..+.+.+.+ .|++++.+-++.. ...........+ + .+.+.+.+.++++++|-|+
T Consensus 78 ~~~~~v~~~~~~~~~~~~l~~~~~~g~~vvg~~d~~~-~~~~~~~~~~~~-l---------g~~~~l~~~~~~~~id~v~ 146 (175)
T PF13727_consen 78 RNVLIVGAGGAGRELAEALRSNPRLGYRVVGFVDDDP-SDRGPEIDGVPV-L---------GDLDDLPELVREHDIDEVI 146 (175)
T ss_dssp EEEEEE--SHHHHHHHHHHHH--SSSEEEEEEE-S-G-GGTT-EETTEEE-E-----------GGGHHHHHHHHT--EEE
T ss_pred cceEEEEEechHHHHHHHHHhhhhcCceEEEEEeCch-hhccCcccCcee-E---------cCHHHHHHHHHhCCCCEEE
Confidence 445777777778777777766 6988887654332 211111222222 2 3467899999999999998
Q ss_pred eccCcCccc--HHHHHHHHHcCCce
Q 021372 149 PGYGFLAEN--AVFVEMCREHGINF 171 (313)
Q Consensus 149 p~~g~~~e~--~~~~~~l~~~gi~~ 171 (313)
.......+. ..+.+.+++.++.+
T Consensus 147 ial~~~~~~~i~~ii~~~~~~~v~v 171 (175)
T PF13727_consen 147 IALPWSEEEQIKRIIEELENHGVRV 171 (175)
T ss_dssp E--TTS-HHHHHHHHHHHHTTT-EE
T ss_pred EEcCccCHHHHHHHHHHHHhCCCEE
Confidence 765322121 35667777778765
No 307
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=91.00 E-value=2.1 Score=41.32 Aligned_cols=88 Identities=17% Similarity=0.128 Sum_probs=55.0
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhh-------hcCceEEccCCCCCCCcCCHHHHHHHHHhcC
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK-------LADESVCIGEAPSSQSYLLIPNVLSAAISRG 143 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~-------~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~ 143 (313)
.+|+.|.|....+..+.+.|.++|.+++++..+......... ..+....++ ..+...+.+++++.+
T Consensus 300 gkrv~v~g~~~~~~~l~~~L~elG~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~v~~-------~~d~~e~~~~l~~~~ 372 (429)
T cd03466 300 GRKAAIYGEPDFVVAITRFVLENGMVPVLIATGSESKKLKEKLEEDLKEYVEKCVILD-------GADFFDIESYAKELK 372 (429)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHCCCEEEEEEeCCCChHHHHHHHHHHHhcCCceEEEe-------CCCHHHHHHHHHhcC
Confidence 578999998878999999999999998666543322211111 122332221 235677888888888
Q ss_pred CCEEeeccCcCcccHHHHHHHHHcCCcee
Q 021372 144 CTMLHPGYGFLAENAVFVEMCREHGINFI 172 (313)
Q Consensus 144 id~vip~~g~~~e~~~~~~~l~~~gi~~~ 172 (313)
+|.++... .......+.|++++
T Consensus 373 ~dliiG~s-------~~~~~a~~~~ip~~ 394 (429)
T cd03466 373 IDVLIGNS-------YGRRIAEKLGIPLI 394 (429)
T ss_pred CCEEEECc-------hhHHHHHHcCCCEE
Confidence 88888432 12234455677664
No 308
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=90.96 E-value=1.4 Score=37.29 Aligned_cols=88 Identities=15% Similarity=0.248 Sum_probs=61.5
Q ss_pred ccEEEEEcCCHhHHHHH--HHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372 71 QEKILVANRGEIAVRVI--RTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~--~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi 148 (313)
+.++.|+|.|.+|+.++ .-.++.|++++.+. |.++........+ +.+ .+++.+...+++.+++..+
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~F-Dv~~~~VG~~~~~--v~V---------~~~d~le~~v~~~dv~iai 151 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAF-DVDPDKVGTKIGD--VPV---------YDLDDLEKFVKKNDVEIAI 151 (211)
T ss_pred ceeEEEEccChHHHHHhcCcchhhcCceEEEEe-cCCHHHhCcccCC--eee---------echHHHHHHHHhcCccEEE
Confidence 57899999999988877 45678899988765 3333344444444 222 4578999999999999777
Q ss_pred eccCcCccc-HHHHHHHHHcCCcee
Q 021372 149 PGYGFLAEN-AVFVEMCREHGINFI 172 (313)
Q Consensus 149 p~~g~~~e~-~~~~~~l~~~gi~~~ 172 (313)
.+. ..++ ...++.+.+.|+.-+
T Consensus 152 LtV--Pa~~AQ~vad~Lv~aGVkGI 174 (211)
T COG2344 152 LTV--PAEHAQEVADRLVKAGVKGI 174 (211)
T ss_pred EEc--cHHHHHHHHHHHHHcCCceE
Confidence 653 2233 456778888888765
No 309
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=90.95 E-value=0.52 Score=37.72 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=29.2
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCc-EEEEecC
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIP-CVAVYST 103 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~-vi~v~~~ 103 (313)
.+++||+|+|..++.++.+|.++|++ ++++..+
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 68999999999999999999999999 6666543
No 310
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.95 E-value=1.1 Score=39.02 Aligned_cols=34 Identities=6% Similarity=0.053 Sum_probs=29.4
Q ss_pred ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+++||+|+ +.+|..+++.+.+.|++|++++.+.
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~ 39 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ 39 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 478999995 8899999999999999998886554
No 311
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=90.94 E-value=2.2 Score=41.46 Aligned_cols=100 Identities=19% Similarity=0.240 Sum_probs=59.6
Q ss_pred ccEEEEEcCCH----hHHHHHHHHHHcCC--cEEEEecCCCcchh---hhh------hcCceEEccCCCCCCCcCCHHHH
Q 021372 71 QEKILVANRGE----IAVRVIRTAHEMGI--PCVAVYSTIDKDAL---HVK------LADESVCIGEAPSSQSYLLIPNV 135 (313)
Q Consensus 71 ~~~ILIig~g~----~a~~v~~al~~~G~--~vi~v~~~~~~~~~---~~~------~ad~~~~v~~~~~~~~~~~~~~l 135 (313)
.++|.|+|.+. .+..+++.+++.|| +|+.+++......- +.. -.|-.+..-| ......+
T Consensus 7 p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i~G~~~~~sl~~lp~~~Dlavi~vp------~~~~~~~ 80 (447)
T TIGR02717 7 PKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEILGVKAYPSVLEIPDPVDLAVIVVP------AKYVPQV 80 (447)
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCccCCccccCCHHHCCCCCCEEEEecC------HHHHHHH
Confidence 47899999743 69999999999998 68878554321110 000 1122221111 1334566
Q ss_pred HHHHHhcCCCEEeecc-CcC--cc-----cHHHHHHHHHcCCceeCCCH
Q 021372 136 LSAAISRGCTMLHPGY-GFL--AE-----NAVFVEMCREHGINFIGPNP 176 (313)
Q Consensus 136 ~~~~~~~~id~vip~~-g~~--~e-----~~~~~~~l~~~gi~~~g~~~ 176 (313)
++.|.+.++..++... |+- .+ ...+.+..++.|+.++||+-
T Consensus 81 l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlGPnc 129 (447)
T TIGR02717 81 VEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLGPNC 129 (447)
T ss_pred HHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEecCe
Confidence 6667778888776532 221 11 13566777788999998764
No 312
>PRK06185 hypothetical protein; Provisional
Probab=90.93 E-value=0.36 Score=45.82 Aligned_cols=35 Identities=6% Similarity=0.052 Sum_probs=31.4
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
+...|+|+|+|..|..++..|.+.|++|++++..+
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 45789999999999999999999999999998654
No 313
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.86 E-value=1.3 Score=39.01 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=28.6
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCC-cEEEEecC
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGI-PCVAVYST 103 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~ 103 (313)
...+|+|+|.|..|-.++++|.+.|+ +++++|.+
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 35789999999999999999999999 55666544
No 314
>PRK08303 short chain dehydrogenase; Provisional
Probab=90.80 E-value=0.94 Score=41.51 Aligned_cols=36 Identities=14% Similarity=0.045 Sum_probs=29.5
Q ss_pred cccccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecC
Q 021372 68 TCRQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 68 ~~~~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
....|++||+|+ +.+|..+++.+.+.|++|++++.+
T Consensus 5 ~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~ 41 (305)
T PRK08303 5 PLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRS 41 (305)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence 333588999995 458999999999999999988654
No 315
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=90.78 E-value=0.89 Score=42.64 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=28.3
Q ss_pred ccEEEEEcCCHh-----HHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVANRGEI-----AVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig~g~~-----a~~v~~al~~~G~~vi~v~~~~ 104 (313)
|++|+|.|+|.. |+.+++.|++.|++|..+.++.
T Consensus 1 ~~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~ 39 (352)
T PRK12446 1 MKKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQ 39 (352)
T ss_pred CCeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCC
Confidence 468999997764 7899999999999999997544
No 316
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=90.77 E-value=1.5 Score=38.79 Aligned_cols=35 Identities=14% Similarity=0.161 Sum_probs=29.7
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID 105 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~ 105 (313)
.+++||+| ++.+|..+++.|.+.|++|++++.+..
T Consensus 9 ~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~ 44 (266)
T PRK06171 9 GKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGG 44 (266)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 57899999 567899999999999999999865543
No 317
>PRK07023 short chain dehydrogenase; Provisional
Probab=90.75 E-value=1.3 Score=38.65 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=28.0
Q ss_pred cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
+++||+| +|.+|..+++.+.+.|++|++++.+.
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~ 35 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSR 35 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCCCEEEEEecCc
Confidence 4799999 56689999999999999999886543
No 318
>PRK06126 hypothetical protein; Provisional
Probab=90.74 E-value=0.39 Score=47.67 Aligned_cols=37 Identities=11% Similarity=0.219 Sum_probs=32.2
Q ss_pred cccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 68 TCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 68 ~~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.++..+|+|+|+|+.|+.++-.|.+.|++|++++..+
T Consensus 4 ~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~ 40 (545)
T PRK06126 4 NTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKD 40 (545)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 3445789999999999999999999999999997543
No 319
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.74 E-value=1.3 Score=39.26 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=28.1
Q ss_pred ccEEEEEcC---CHhHHHHHHHHHHcCCcEEEEec
Q 021372 71 QEKILVANR---GEIAVRVIRTAHEMGIPCVAVYS 102 (313)
Q Consensus 71 ~~~ILIig~---g~~a~~v~~al~~~G~~vi~v~~ 102 (313)
.|++||+|+ +.+|..+++.+.+.|++|++++.
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r 41 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYA 41 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecC
Confidence 578999997 47999999999999999998753
No 320
>PRK06753 hypothetical protein; Provisional
Probab=90.73 E-value=0.4 Score=44.92 Aligned_cols=34 Identities=15% Similarity=0.058 Sum_probs=30.5
Q ss_pred cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (313)
Q Consensus 72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~ 105 (313)
++|+|+|+|+.|+.++..|++.|++|+++...+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 3799999999999999999999999999976554
No 321
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=90.73 E-value=1.1 Score=39.22 Aligned_cols=34 Identities=21% Similarity=0.136 Sum_probs=29.2
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus 12 ~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~ 46 (247)
T PRK08945 12 DRIILVTGAGDGIGREAALTYARHGATVILLGRTE 46 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCH
Confidence 57899999 66689999999999999999987554
No 322
>PRK07831 short chain dehydrogenase; Provisional
Probab=90.70 E-value=0.92 Score=40.10 Aligned_cols=34 Identities=26% Similarity=0.219 Sum_probs=28.8
Q ss_pred ccEEEEEcC-C-HhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVANR-G-EIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig~-g-~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+++||+|+ | .+|..+++.+.+.|++|++++.+.
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~ 52 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGARVVISDIHE 52 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCH
Confidence 578999996 4 699999999999999998876543
No 323
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=90.68 E-value=1.8 Score=40.46 Aligned_cols=35 Identities=14% Similarity=0.268 Sum_probs=30.5
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCC-cEEEEecCC
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTI 104 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~~ 104 (313)
...+|+|+|.|.+|..+++.|.+.|+ +++++|.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 46789999999999999999999999 788887653
No 324
>PRK09620 hypothetical protein; Provisional
Probab=90.67 E-value=1 Score=39.66 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=26.9
Q ss_pred ccEEEEEcC-----------------CHhHHHHHHHHHHcCCcEEEEec
Q 021372 71 QEKILVANR-----------------GEIAVRVIRTAHEMGIPCVAVYS 102 (313)
Q Consensus 71 ~~~ILIig~-----------------g~~a~~v~~al~~~G~~vi~v~~ 102 (313)
.++|||++| |.+|..++++|.++|++|++++.
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g 51 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHG 51 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeC
Confidence 467888765 56799999999999999999864
No 325
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=90.66 E-value=4 Score=38.28 Aligned_cols=71 Identities=31% Similarity=0.372 Sum_probs=43.2
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcC-CcEEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHH---hcCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMG-IPCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAI---SRGC 144 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G-~~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~---~~~i 144 (313)
.+.|||+| +|..|..+++-|+..| ..|+++.+.. .......+ +|+.+ + |.+ +++.+.++ ..++
T Consensus 158 g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e-~~~l~k~lGAd~vv--d-------y~~-~~~~e~~kk~~~~~~ 226 (347)
T KOG1198|consen 158 GKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKE-KLELVKKLGADEVV--D-------YKD-ENVVELIKKYTGKGV 226 (347)
T ss_pred CCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccc-hHHHHHHcCCcEee--c-------CCC-HHHHHHHHhhcCCCc
Confidence 56899998 5568999999999999 5555554433 33332332 44444 2 333 33344333 4479
Q ss_pred CEEeeccC
Q 021372 145 TMLHPGYG 152 (313)
Q Consensus 145 d~vip~~g 152 (313)
|+|+=..+
T Consensus 227 DvVlD~vg 234 (347)
T KOG1198|consen 227 DVVLDCVG 234 (347)
T ss_pred cEEEECCC
Confidence 99996543
No 326
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=90.66 E-value=1.5 Score=40.97 Aligned_cols=51 Identities=25% Similarity=0.349 Sum_probs=37.8
Q ss_pred EEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhc---CCCCcEEEeeccCC
Q 021372 224 VMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAA---FGNDGVYLEKYVQN 274 (313)
Q Consensus 224 ~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~---~~~~~vlvEe~I~G 274 (313)
+|||...|.-|.||..+.+.+|+...-++-+..-... ..-..+||||=|.-
T Consensus 260 ViVKADaGTYGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~T 313 (403)
T TIGR02049 260 VIVKADAGTYGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVYT 313 (403)
T ss_pred EEEEcCCCCCCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcce
Confidence 6899999999999999999999988665544322111 11257999987766
No 327
>PRK06198 short chain dehydrogenase; Provisional
Probab=90.66 E-value=1.2 Score=39.12 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=28.4
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCc-EEEEecC
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIP-CVAVYST 103 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~-vi~v~~~ 103 (313)
..++++|+| ++.+|..+++.+.+.|++ |++++.+
T Consensus 5 ~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~ 40 (260)
T PRK06198 5 DGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRN 40 (260)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCC
Confidence 357899999 566899999999999999 8887654
No 328
>PRK05717 oxidoreductase; Validated
Probab=90.60 E-value=0.81 Score=40.30 Aligned_cols=34 Identities=15% Similarity=0.009 Sum_probs=29.0
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~ 44 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR 44 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH
Confidence 57899999 56789999999999999999986443
No 329
>PRK12367 short chain dehydrogenase; Provisional
Probab=90.60 E-value=1.1 Score=39.68 Aligned_cols=35 Identities=9% Similarity=0.238 Sum_probs=29.4
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
+.+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus 13 ~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~ 48 (245)
T PRK12367 13 QGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSK 48 (245)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCc
Confidence 357899999 46689999999999999999886543
No 330
>PRK07035 short chain dehydrogenase; Provisional
Probab=90.59 E-value=1.2 Score=38.95 Aligned_cols=34 Identities=12% Similarity=0.157 Sum_probs=29.1
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~ 42 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKL 42 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 57899999 56689999999999999999987543
No 331
>PRK06128 oxidoreductase; Provisional
Probab=90.55 E-value=1.3 Score=40.31 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=28.5
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
..|++||+| ++.+|..+++.+.+.|++|++.+.+
T Consensus 54 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~ 88 (300)
T PRK06128 54 QGRKALITGADSGIGRATAIAFAREGADIALNYLP 88 (300)
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 358899999 5668999999999999999887543
No 332
>PRK05867 short chain dehydrogenase; Provisional
Probab=90.55 E-value=0.99 Score=39.67 Aligned_cols=34 Identities=18% Similarity=0.198 Sum_probs=29.1
Q ss_pred ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+++||+|+ +.+|..+++.|.+.|++|++++.+.
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~ 43 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGAQVAIAARHL 43 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCH
Confidence 578999995 6689999999999999999886543
No 333
>PRK06949 short chain dehydrogenase; Provisional
Probab=90.53 E-value=1.2 Score=39.18 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=29.4
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.++|||+| +|.+|..+++.+.+.|++|++++.+.
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~ 43 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQAGAKVVLASRRV 43 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 58899999 57799999999999999999886544
No 334
>PRK06475 salicylate hydroxylase; Provisional
Probab=90.52 E-value=0.4 Score=45.61 Aligned_cols=34 Identities=12% Similarity=0.103 Sum_probs=30.7
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
..+|+|+|+|..|+.++.+|++.|++|.++...+
T Consensus 2 ~~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~ 35 (400)
T PRK06475 2 RGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQ 35 (400)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 4789999999999999999999999999997543
No 335
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=90.51 E-value=0.46 Score=43.57 Aligned_cols=34 Identities=12% Similarity=0.162 Sum_probs=28.8
Q ss_pred cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (313)
Q Consensus 72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~ 105 (313)
.+|+|+|+|+.|..++..|++.|++|++++..+.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 4699999999999999999999999999986554
No 336
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.49 E-value=0.39 Score=46.51 Aligned_cols=38 Identities=18% Similarity=0.153 Sum_probs=33.1
Q ss_pred cccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372 68 TCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (313)
Q Consensus 68 ~~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~ 105 (313)
.+|.++|.|+|+|+.|+..++.|.+.|++++++....+
T Consensus 3 ~~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~ 40 (448)
T KOG1399|consen 3 MMMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDD 40 (448)
T ss_pred cCCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCC
Confidence 34678999999999999999999999999999865443
No 337
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=90.48 E-value=0.3 Score=45.33 Aligned_cols=68 Identities=18% Similarity=0.251 Sum_probs=39.6
Q ss_pred HHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHH-HHHHHHHHHHHHHHhcCCCCcEEEe
Q 021372 193 KNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPD-EFVKLLQQAKSEAAAAFGNDGVYLE 269 (313)
Q Consensus 193 ~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~-el~~~~~~~~~~~~~~~~~~~vlvE 269 (313)
++.-++.++|| .+.+.++.....+++. -+|+||..|.+|+|+.+-.+.. |.++.++++... ...|+.|
T Consensus 262 eellL~~VpT~--~cg~~~~~~~Vl~~l~-~lvvKp~~g~gg~~~~~G~~~s~e~~~~~~~I~~~------P~~yVAQ 330 (330)
T PF04174_consen 262 EELLLPNVPTW--WCGDPEDREYVLANLD-ELVVKPADGYGGKGVYIGPKLSAERRALRAEILAR------PHRYVAQ 330 (330)
T ss_dssp S--SSEE---E--ETTSHHHHHHHHHSGG-GEEEEE--------EEEGGG--HHHHHHHHHHHHS------GGGEEEE
T ss_pred CCcccCCCCcE--eCCCHHHHHHHHhchh-hcEEEecCCCCCCcceeCCcCCHHHHHHHHHHHhC------ccCCccC
Confidence 45667777886 8889999888888876 6999999999999998843322 777777777653 2467765
No 338
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.48 E-value=1.7 Score=42.74 Aligned_cols=88 Identities=13% Similarity=0.118 Sum_probs=52.0
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~ 150 (313)
.++|+|+|.|.+|+..++.|+..|++|++.|..+..... .......+... ....+.+ .++|.|+..
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~-l~~~g~~~~~~-------~~~~~~l------~~~D~VV~S 77 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRP-HAERGVATVST-------SDAVQQI------ADYALVVTS 77 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHH-HHhCCCEEEcC-------cchHhHh------hcCCEEEEC
Confidence 478999999999999999999999999997643221111 01001111111 0111111 246888876
Q ss_pred cCcCcccHHHHHHHHHcCCceeC
Q 021372 151 YGFLAENAVFVEMCREHGINFIG 173 (313)
Q Consensus 151 ~g~~~e~~~~~~~l~~~gi~~~g 173 (313)
.|....+. ....+.+.|+++++
T Consensus 78 pGi~~~~p-~~~~a~~~gi~v~~ 99 (488)
T PRK03369 78 PGFRPTAP-VLAAAAAAGVPIWG 99 (488)
T ss_pred CCCCCCCH-HHHHHHHCCCcEee
Confidence 65444443 34445677888874
No 339
>PRK06847 hypothetical protein; Provisional
Probab=90.47 E-value=0.48 Score=44.39 Aligned_cols=34 Identities=18% Similarity=0.137 Sum_probs=30.8
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
+++|+|+|+|+.|+.++..|++.|++|++++...
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~ 37 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDP 37 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 5789999999999999999999999999997543
No 340
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=90.46 E-value=2.9 Score=38.21 Aligned_cols=109 Identities=17% Similarity=0.139 Sum_probs=64.5
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEE-EEecC--CCcch---hhhh-----h---cCceEEccCCCCCCCcCCHHHH
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCV-AVYST--IDKDA---LHVK-----L---ADESVCIGEAPSSQSYLLIPNV 135 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi-~v~~~--~~~~~---~~~~-----~---ad~~~~v~~~~~~~~~~~~~~l 135 (313)
..||+|.| .+..+..+++.+.+.|++.+ .|++. ..... .+.. . .|-.+..-| ......+
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~~v~G~~~y~sv~dlp~~~~~DlAvi~vp------~~~v~~~ 81 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAVEATGANASVIYVP------PPFAADA 81 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCCeEeCeeccCCHHHHhhccCCCEEEEEcC------HHHHHHH
Confidence 56899999 67789999999999999733 45433 11110 0000 0 232222111 1223455
Q ss_pred HHHHHhcCCCEEee-ccCcCccc-HHHHHHHHHcCCceeCCCHHHHHHhCCH
Q 021372 136 LSAAISRGCTMLHP-GYGFLAEN-AVFVEMCREHGINFIGPNPDSIRIMGDK 185 (313)
Q Consensus 136 ~~~~~~~~id~vip-~~g~~~e~-~~~~~~l~~~gi~~~g~~~~~i~~~~DK 185 (313)
++.|.+.++..++. ..|+-.++ ..+.+..++.|++++||+---+-...++
T Consensus 82 l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~girvlGPNc~Gi~~~~~~ 133 (291)
T PRK05678 82 ILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKTRLIGPNCPGIITPGEC 133 (291)
T ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCCcccccccc
Confidence 55566678876544 34443221 2677888899999999987766555554
No 341
>PRK00124 hypothetical protein; Validated
Probab=90.46 E-value=8.6 Score=31.47 Aligned_cols=115 Identities=18% Similarity=0.201 Sum_probs=65.9
Q ss_pred EEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeecc
Q 021372 73 KILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (313)
Q Consensus 73 ~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~ 151 (313)
+|+|=+ +=+.=-.+.+.+++.|++++++.+..........-.-+.+.++..++.-+ ..|++.+.. -|.|+.
T Consensus 2 ~I~VDADACPVk~~i~r~a~r~~i~v~~Vas~n~~~~~~~~~~v~~v~V~~g~D~AD----~~Iv~~~~~--gDiVIT-- 73 (151)
T PRK00124 2 KIYVDADACPVKDIIIRVAERHGIPVTLVASFNHFLRVPYSPFIRTVYVDAGFDAAD----NEIVQLAEK--GDIVIT-- 73 (151)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCeEEEEEeCCcccCCCCCCceEEEEeCCCCChHH----HHHHHhCCC--CCEEEe--
Confidence 455555 33445567889999999999987433222111111123344542222111 255555543 488874
Q ss_pred CcCcccHHHHHHHHHcCCceeCC-----CHHHHHHhCCHHHHHHHHHHCCCCC
Q 021372 152 GFLAENAVFVEMCREHGINFIGP-----NPDSIRIMGDKSTARETMKNAGVPT 199 (313)
Q Consensus 152 g~~~e~~~~~~~l~~~gi~~~g~-----~~~~i~~~~DK~~~~~~l~~~Gip~ 199 (313)
.+..++..+-..|..++.| +.+.|.....--.+.+-+++.|..+
T Consensus 74 ----~Di~LAa~~l~Kga~vl~prG~~yt~~nI~~~L~~R~~~~~lR~~G~~t 122 (151)
T PRK00124 74 ----QDYGLAALALEKGAIVLNPRGYIYTNDNIDQLLAMRDLMATLRRSGIRT 122 (151)
T ss_pred ----CCHHHHHHHHHCCCEEECCCCcCCCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4456677777778766644 3556666666666667777888765
No 342
>PRK08278 short chain dehydrogenase; Provisional
Probab=90.45 E-value=1.4 Score=39.34 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=29.0
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 40 (273)
T PRK08278 6 GKTLFITGASRGIGLAIALRAARDGANIVIAAKTA 40 (273)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeccc
Confidence 57899999 56689999999999999999887543
No 343
>PRK05865 hypothetical protein; Provisional
Probab=90.42 E-value=4.1 Score=42.77 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=64.8
Q ss_pred cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (313)
Q Consensus 72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~ 150 (313)
+||||+| +|.+|..+++.|.+.|++|++++....... ...-..+.. +..+.+.+.++++ ++|.|+-.
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~~---~~~v~~v~g-------DL~D~~~l~~al~--~vD~VVHl 68 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDSW---PSSADFIAA-------DIRDATAVESAMT--GADVVAHC 68 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhhc---ccCceEEEe-------eCCCHHHHHHHHh--CCCEEEEC
Confidence 3799999 588999999999999999998864321110 000112222 2344556666554 58988754
Q ss_pred cCcCcc----c----HHHHHHHHHcCCc-eeCCCHHHHHHhCCHHHHHHHHHHCCCCCC
Q 021372 151 YGFLAE----N----AVFVEMCREHGIN-FIGPNPDSIRIMGDKSTARETMKNAGVPTV 200 (313)
Q Consensus 151 ~g~~~e----~----~~~~~~l~~~gi~-~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p 200 (313)
-+.... + ..+.+.+.+.++. ++..+... |...-+++.+.|+++.
T Consensus 69 Aa~~~~~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~------K~aaE~ll~~~gl~~v 121 (854)
T PRK05865 69 AWVRGRNDHINIDGTANVLKAMAETGTGRIVFTSSGH------QPRVEQMLADCGLEWV 121 (854)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHcCCCeEEEECCcH------HHHHHHHHHHcCCCEE
Confidence 321111 1 1344556666652 32222221 7777788888887763
No 344
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=90.34 E-value=1.2 Score=41.39 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=28.7
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
.++|||+| +|.+|..+++.|.+.|++|++++.+
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~ 43 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRD 43 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 57899999 5779999999999999999987543
No 345
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=90.29 E-value=0.47 Score=45.07 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=31.5
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
|..+|+|+|+|+.|...+..|++.|++|++++..+
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (390)
T TIGR02360 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQS 35 (390)
T ss_pred CCceEEEECccHHHHHHHHHHHHCCCCEEEEECCC
Confidence 45789999999999999999999999999997654
No 346
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=90.29 E-value=0.91 Score=40.02 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=29.2
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+++||+| +|.+|..+++.+.+.|++|++++.+.
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~ 46 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAGARVVLSARKA 46 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 57899999 56789999999999999999886543
No 347
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.23 E-value=2.1 Score=41.88 Aligned_cols=115 Identities=13% Similarity=0.071 Sum_probs=67.2
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhh-hhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-VKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~-~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip 149 (313)
.++|+|+|-|.+|+.+++.|++.|.+|++.+.+....... ..+......+.. ....+.+ .++|.|+.
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~------~~~d~vV~ 75 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVET------EASAQRL------AAFDVVVK 75 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeC------CCChHHc------cCCCEEEE
Confidence 5789999999999999999999999999987543322111 122111111100 1111222 34788887
Q ss_pred ccCcCcccHHHHHHHHHcCCceeCCCHHH-HHH-hC---------------CH----HHHHHHHHHCCCCC
Q 021372 150 GYGFLAENAVFVEMCREHGINFIGPNPDS-IRI-MG---------------DK----STARETMKNAGVPT 199 (313)
Q Consensus 150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~-i~~-~~---------------DK----~~~~~~l~~~Gip~ 199 (313)
..+....+. ....+.+.|+++++ ..+. +.. .. -| ....++|+.+|.++
T Consensus 76 SpgI~~~~p-~~~~a~~~~i~i~~-~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~~~ 144 (468)
T PRK04690 76 SPGISPYRP-EALAAAARGTPFIG-GTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAGHRT 144 (468)
T ss_pred CCCCCCCCH-HHHHHHHcCCcEEE-HHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcCCcE
Confidence 665443443 34445678888883 5554 322 21 12 35567888888654
No 348
>PRK07109 short chain dehydrogenase; Provisional
Probab=90.23 E-value=1.2 Score=41.42 Aligned_cols=34 Identities=9% Similarity=0.140 Sum_probs=28.9
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~ 42 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGAKVVLLARGE 42 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 57899999 56689999999999999999886543
No 349
>PRK12827 short chain dehydrogenase; Provisional
Probab=90.19 E-value=2.2 Score=37.04 Aligned_cols=33 Identities=9% Similarity=0.215 Sum_probs=28.2
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS 102 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~ 102 (313)
+.+++||+| +|.+|..+++.|.+.|++|++++.
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~ 38 (249)
T PRK12827 5 DSRRVLITGGSGGLGRAIAVRLAADGADVIVLDI 38 (249)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcC
Confidence 357899999 667899999999999999988753
No 350
>PLN02214 cinnamoyl-CoA reductase
Probab=90.16 E-value=1.5 Score=40.67 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=29.8
Q ss_pred cccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 70 ~~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
++++|||+|+ |.+|..+++.|.+.|++|+++..+.
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~ 44 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNP 44 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCc
Confidence 3678999995 7899999999999999998876443
No 351
>PRK07062 short chain dehydrogenase; Provisional
Probab=90.16 E-value=1.2 Score=39.32 Aligned_cols=35 Identities=11% Similarity=0.104 Sum_probs=29.4
Q ss_pred ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTID 105 (313)
Q Consensus 71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~~ 105 (313)
.+++||+|+ +.+|..+++.+.+.|++|++++.+..
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~ 43 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEE 43 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 578999994 56899999999999999998865543
No 352
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=90.04 E-value=0.49 Score=44.82 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=31.5
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
|..+|+|+|+|+.|+.++..|++.|++|++++..+
T Consensus 1 ~~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~ 35 (392)
T PRK08243 1 MRTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRS 35 (392)
T ss_pred CcceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 35789999999999999999999999999997654
No 353
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=90.01 E-value=1.2 Score=40.08 Aligned_cols=74 Identities=16% Similarity=0.193 Sum_probs=44.4
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCc-EEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~-vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip 149 (313)
..+|||.|+|.+|+..++.++.+|.+ |++++.++........+....+ ++. .+ ..+.+.+.....++|.++-
T Consensus 121 g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~-i~~----~~--~~~~~~~~~~~~g~d~vid 193 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATAL-AEP----EV--LAERQGGLQNGRGVDVALE 193 (280)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEe-cCc----hh--hHHHHHHHhCCCCCCEEEE
Confidence 57899999999999999999999998 7776544333332222222222 221 01 1233444333456899985
Q ss_pred cc
Q 021372 150 GY 151 (313)
Q Consensus 150 ~~ 151 (313)
..
T Consensus 194 ~~ 195 (280)
T TIGR03366 194 FS 195 (280)
T ss_pred CC
Confidence 44
No 354
>PRK06181 short chain dehydrogenase; Provisional
Probab=89.99 E-value=1.4 Score=38.92 Aligned_cols=33 Identities=9% Similarity=0.078 Sum_probs=28.1
Q ss_pred cEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 72 ~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
+++||+|+ |.+|..+++.+.+.|++|++++.+.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~ 35 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGAQLVLAARNE 35 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 57999994 7789999999999999999986543
No 355
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=89.98 E-value=1.4 Score=38.98 Aligned_cols=33 Identities=21% Similarity=0.190 Sum_probs=27.7
Q ss_pred cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~ 34 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNE 34 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3799999 56689999999999999999886543
No 356
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=89.97 E-value=0.51 Score=45.38 Aligned_cols=35 Identities=11% Similarity=0.047 Sum_probs=31.3
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
|+++|+|+|+|..|...+.+|.++|++|.+++..+
T Consensus 1 ~~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp 35 (436)
T PRK05335 1 MMKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP 35 (436)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 46789999999999999999999999999997544
No 357
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=89.96 E-value=0.77 Score=38.56 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=31.7
Q ss_pred ccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (313)
Q Consensus 69 ~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~ 105 (313)
...++|+|+|-|.+|+.+++.|+..|.+|+.++....
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~ 70 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPK 70 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCH
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCC
Confidence 3478999999999999999999999999999976544
No 358
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=89.96 E-value=1.4 Score=38.96 Aligned_cols=32 Identities=9% Similarity=0.285 Sum_probs=27.6
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEe
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY 101 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~ 101 (313)
..|++||+| ++.+|..+++.+.+.|++|+++.
T Consensus 7 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~ 39 (260)
T PRK08416 7 KGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTY 39 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEc
Confidence 468899999 45689999999999999998774
No 359
>PRK06197 short chain dehydrogenase; Provisional
Probab=89.90 E-value=1.1 Score=40.85 Aligned_cols=34 Identities=9% Similarity=0.060 Sum_probs=28.9
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
..++|||+| ++.+|..+++.+.+.|++|++++.+
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~ 49 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRN 49 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 357899999 5668999999999999999888654
No 360
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=89.89 E-value=1.4 Score=39.25 Aligned_cols=34 Identities=6% Similarity=0.097 Sum_probs=28.9
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~ 44 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQ 44 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 47899999 46789999999999999999886543
No 361
>PRK10637 cysG siroheme synthase; Provisional
Probab=89.85 E-value=1.5 Score=42.68 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=30.1
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.++|||+|+|..|.+=++.|.+.|.+|+++.+.-
T Consensus 12 ~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~ 45 (457)
T PRK10637 12 DRDCLLVGGGDVAERKARLLLDAGARLTVNALAF 45 (457)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 6899999999999988899999999999996543
No 362
>PRK08309 short chain dehydrogenase; Provisional
Probab=89.84 E-value=3.3 Score=34.82 Aligned_cols=32 Identities=19% Similarity=0.085 Sum_probs=26.7
Q ss_pred cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
++++|+|+...+..+++.|.+.|++|++++.+
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~G~~V~v~~R~ 32 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEKGFHVSVIARR 32 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHCcCEEEEEECC
Confidence 36899997777777999999999999988644
No 363
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=89.84 E-value=4.8 Score=35.96 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=25.2
Q ss_pred cEEEEEcC-CHhHHHHHHHHHHc-CCcEEEEe
Q 021372 72 EKILVANR-GEIAVRVIRTAHEM-GIPCVAVY 101 (313)
Q Consensus 72 ~~ILIig~-g~~a~~v~~al~~~-G~~vi~v~ 101 (313)
.||+|+|. |.+|..+++.+.+. +++++.+.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~ 33 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAV 33 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 58999997 99999999999874 78877654
No 364
>PRK06125 short chain dehydrogenase; Provisional
Probab=89.83 E-value=0.85 Score=40.25 Aligned_cols=34 Identities=12% Similarity=0.107 Sum_probs=29.0
Q ss_pred ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+++||+|+ +.+|..+++.+.+.|++|++++.+.
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~ 41 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDA 41 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 478999995 6689999999999999999886543
No 365
>PRK06484 short chain dehydrogenase; Validated
Probab=89.82 E-value=1.6 Score=42.88 Aligned_cols=35 Identities=9% Similarity=0.029 Sum_probs=29.7
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
..+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~ 303 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDA 303 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 368899999 55689999999999999999986543
No 366
>PRK08339 short chain dehydrogenase; Provisional
Probab=89.77 E-value=1.3 Score=39.47 Aligned_cols=34 Identities=12% Similarity=0.106 Sum_probs=28.8
Q ss_pred ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.|++||+|+ +.+|..+++.|.+.|++|++++.+.
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~ 42 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARAGADVILLSRNE 42 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 578999994 5689999999999999999886543
No 367
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=89.74 E-value=0.93 Score=39.96 Aligned_cols=32 Identities=9% Similarity=0.064 Sum_probs=27.8
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS 102 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~ 102 (313)
.|++||+| ++.+|+.+++.+.+.|++|++++.
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~ 40 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAKAGADIVGVGV 40 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEecC
Confidence 57899999 556899999999999999998754
No 368
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.71 E-value=9.8 Score=30.98 Aligned_cols=104 Identities=12% Similarity=0.131 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccCcCcccHHHH
Q 021372 82 IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFV 161 (313)
Q Consensus 82 ~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g~~~e~~~~~ 161 (313)
.=-.+.+.+.++|++|++|.+...... .+......+ +++..+.- -.+|++.+ +.-|.|+. .+.-++
T Consensus 13 Vk~~i~r~A~r~~~~v~~Van~~~~~~-~~~~i~~v~-V~~g~Daa----D~~Iv~~a--~~gDlVVT------~Di~LA 78 (150)
T COG1671 13 VKDEIYRVAERMGLKVTFVANFPHRVP-PSPEIRTVV-VDAGFDAA----DDWIVNLA--EKGDLVVT------ADIPLA 78 (150)
T ss_pred hHHHHHHHHHHhCCeEEEEeCCCccCC-CCCceeEEE-ecCCcchH----HHHHHHhC--CCCCEEEE------CchHHH
Confidence 445678999999999999986655432 333344333 43222211 23566666 34677874 445677
Q ss_pred HHHHHcCCceeCC-----CHHHHHHhCCHHHHHHHHHHCCCCC
Q 021372 162 EMCREHGINFIGP-----NPDSIRIMGDKSTARETMKNAGVPT 199 (313)
Q Consensus 162 ~~l~~~gi~~~g~-----~~~~i~~~~DK~~~~~~l~~~Gip~ 199 (313)
..+-..|..+++| +.+.|....+...+...|++.|..+
T Consensus 79 ~~ll~kg~~v~~prGr~y~~~nI~~~L~~R~~~~~lR~~G~~~ 121 (150)
T COG1671 79 SLLLDKGAAVLNPRGRLYTEENIGERLAMRDFMAKLRRQGKKT 121 (150)
T ss_pred HHHHhcCCEEECCCCcccCHhHHHHHHHHHHHHHHHHHhcccc
Confidence 7777889888765 3556677777777777788888764
No 369
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=89.70 E-value=0.92 Score=45.36 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=30.7
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
..++|+|+|+|+.|+..+..|+++|++|++++..
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~ 169 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAG 169 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 3689999999999999999999999999998743
No 370
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=89.70 E-value=0.51 Score=46.94 Aligned_cols=39 Identities=13% Similarity=0.223 Sum_probs=33.5
Q ss_pred cccccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 66 KVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 66 ~~~~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
+..++...|+|+|+|+.|+.++..|.+.|++|++++..+
T Consensus 18 ~~~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~ 56 (547)
T PRK08132 18 ADDPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDD 56 (547)
T ss_pred CCCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 344456789999999999999999999999999997554
No 371
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=89.66 E-value=2.8 Score=37.68 Aligned_cols=109 Identities=17% Similarity=0.147 Sum_probs=57.5
Q ss_pred cEEEEEcCCHhHHHHHHHHHHc--CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372 72 EKILVANRGEIAVRVIRTAHEM--GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (313)
Q Consensus 72 ~~ILIig~g~~a~~v~~al~~~--G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip 149 (313)
+||.|+|.|.+|..+++.+.+. +++++.+. +.+... ...+++..- . ..+.+.+.++ .++|+|+.
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~-d~~~~~-a~~~a~~~~-~------~~~~~~~ell-----~~~DvVvi 67 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFY-DRNLEK-AENLASKTG-A------KACLSIDELV-----EDVDLVVE 67 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEE-CCCHHH-HHHHHHhcC-C------eeECCHHHHh-----cCCCEEEE
Confidence 4899999999999999998876 46655443 333221 112222110 0 1133444543 35899885
Q ss_pred ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHH---HHHHHHHHCCCC
Q 021372 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKS---TARETMKNAGVP 198 (313)
Q Consensus 150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~---~~~~~l~~~Gip 198 (313)
.... .....+...+.+.|..++.-+.-+ +.|+. .+.+.+++.|..
T Consensus 68 ~a~~-~~~~~~~~~al~~Gk~Vvv~s~gA---l~d~~~~~~L~~aA~~~g~~ 115 (265)
T PRK13304 68 CASV-NAVEEVVPKSLENGKDVIIMSVGA---LADKELFLKLYKLAKENNCK 115 (265)
T ss_pred cCCh-HHHHHHHHHHHHcCCCEEEEchHH---hcCHHHHHHHHHHHHHcCCE
Confidence 4311 111233333345677775333222 23443 455667777743
No 372
>PRK06101 short chain dehydrogenase; Provisional
Probab=89.66 E-value=0.74 Score=40.22 Aligned_cols=34 Identities=12% Similarity=0.138 Sum_probs=28.7
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
++++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~ 35 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQGWQVIACGRNQ 35 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCH
Confidence 36799999 66689999999999999999886543
No 373
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.63 E-value=1.5 Score=38.23 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=27.3
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS 102 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~ 102 (313)
.+++||+| ++.+|..+++.+.+.|++|+++..
T Consensus 5 ~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~ 37 (253)
T PRK08642 5 EQTVLVTGGSRGLGAAIARAFAREGARVVVNYH 37 (253)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcC
Confidence 47899999 666899999999999999987643
No 374
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=89.60 E-value=0.95 Score=41.01 Aligned_cols=54 Identities=13% Similarity=0.113 Sum_probs=42.6
Q ss_pred EEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372 74 ILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (313)
Q Consensus 74 ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~ 150 (313)
|||+| .|.+|..+.+.|. -+++|+.++... ++ ..+.+.+.+++++.++|+|+-.
T Consensus 3 iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~---------------~D-------itd~~~v~~~i~~~~PDvVIn~ 57 (281)
T COG1091 3 ILITGANGQLGTELRRALP-GEFEVIATDRAE---------------LD-------ITDPDAVLEVIRETRPDVVINA 57 (281)
T ss_pred EEEEcCCChHHHHHHHHhC-CCceEEeccCcc---------------cc-------ccChHHHHHHHHhhCCCEEEEC
Confidence 99999 7778999999998 678888874321 21 3567789999999999999975
No 375
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.59 E-value=1.1 Score=40.24 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=27.4
Q ss_pred ccEEEEEcC---CHhHHHHHHHHHHcCCcEEEEe
Q 021372 71 QEKILVANR---GEIAVRVIRTAHEMGIPCVAVY 101 (313)
Q Consensus 71 ~~~ILIig~---g~~a~~v~~al~~~G~~vi~v~ 101 (313)
.|++||+|+ +.+|+.+++.+.+.|++|++++
T Consensus 10 ~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~ 43 (272)
T PRK08159 10 GKRGLILGVANNRSIAWGIAKACRAAGAELAFTY 43 (272)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEc
Confidence 578999997 4699999999999999998875
No 376
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=89.52 E-value=0.56 Score=44.62 Aligned_cols=33 Identities=15% Similarity=0.095 Sum_probs=30.2
Q ss_pred cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+|+|||+|..|..++..|.+.|.+|++++...
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 689999999999999999999999999997653
No 377
>PRK05884 short chain dehydrogenase; Provisional
Probab=89.52 E-value=1.6 Score=37.74 Aligned_cols=32 Identities=13% Similarity=0.142 Sum_probs=27.3
Q ss_pred EEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 73 KILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 73 ~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
|++|+| ++.+|..+++.+.+.|++|++++.+.
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~ 34 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARR 34 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 689998 46789999999999999999886543
No 378
>PRK08862 short chain dehydrogenase; Provisional
Probab=89.48 E-value=1.7 Score=37.79 Aligned_cols=35 Identities=11% Similarity=0.167 Sum_probs=29.0
Q ss_pred ccEEEEEcCC-HhHHHHHHHHHHcCCcEEEEecCCC
Q 021372 71 QEKILVANRG-EIAVRVIRTAHEMGIPCVAVYSTID 105 (313)
Q Consensus 71 ~~~ILIig~g-~~a~~v~~al~~~G~~vi~v~~~~~ 105 (313)
.+++||+|++ .+|..+++.+.+.|++|++++.+..
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~ 40 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGATLILCDQDQS 40 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 5789999944 4899999999999999998865443
No 379
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=89.47 E-value=2.6 Score=40.75 Aligned_cols=85 Identities=18% Similarity=0.171 Sum_probs=56.5
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~ 150 (313)
.+++.|.+.......+++.+.++|.++..+......... .......+. ..|...+.+.+++.++|.++..
T Consensus 311 Gkrvai~~~~~~~~~l~~~l~elGm~v~~~~~~~~~~~~-~~~~~~~~~---------~~D~~~l~~~i~~~~~dliig~ 380 (432)
T TIGR01285 311 GKKVAIAAEPDLLAAWATFFTSMGAQIVAAVTTTGSPLL-QKLPVETVV---------IGDLEDLEDLACAAGADLLITN 380 (432)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHCCCEEEEEEeCCCCHHH-HhCCcCcEE---------eCCHHHHHHHHhhcCCCEEEEC
Confidence 478999988888899999999999999877655433322 222222221 1355678888888899999854
Q ss_pred cCcCcccHHHHHHHHHcCCcee
Q 021372 151 YGFLAENAVFVEMCREHGINFI 172 (313)
Q Consensus 151 ~g~~~e~~~~~~~l~~~gi~~~ 172 (313)
. .-..+..++|+|++
T Consensus 381 s-------~~k~~A~~l~ip~i 395 (432)
T TIGR01285 381 S-------HGRALAQRLALPLV 395 (432)
T ss_pred c-------chHHHHHHcCCCEE
Confidence 2 11234456777775
No 380
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=89.43 E-value=1.9 Score=39.05 Aligned_cols=74 Identities=15% Similarity=0.034 Sum_probs=44.1
Q ss_pred EEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcC---ceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372 73 KILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLAD---ESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (313)
Q Consensus 73 ~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad---~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi 148 (313)
||||+| .|.+|..+++.|.+.|++|++++.............. ....+. -+..+.+.+.++++..++|.|+
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~D~~~~~~~~~~~~~~~~d~vv 75 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGERITRVTFVE-----GDLRDRELLDRLFEEHKIDAVI 75 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhccccceEEEE-----CCCCCHHHHHHHHHhCCCcEEE
Confidence 588998 6779999999999999999887532111110000000 111111 1234556677777666799888
Q ss_pred ecc
Q 021372 149 PGY 151 (313)
Q Consensus 149 p~~ 151 (313)
-.-
T Consensus 76 ~~a 78 (328)
T TIGR01179 76 HFA 78 (328)
T ss_pred ECc
Confidence 543
No 381
>PRK07775 short chain dehydrogenase; Provisional
Probab=89.42 E-value=1.9 Score=38.50 Aligned_cols=35 Identities=17% Similarity=0.125 Sum_probs=29.1
Q ss_pred ccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 69 CRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 69 ~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
+.++++||+| ++.+|..+++.|.+.|++|+++..+
T Consensus 8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~ 43 (274)
T PRK07775 8 PDRRPALVAGASSGIGAATAIELAAAGFPVALGARR 43 (274)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 3357899999 5678999999999999998887643
No 382
>KOG2158 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.39 E-value=0.29 Score=46.68 Aligned_cols=68 Identities=12% Similarity=0.061 Sum_probs=46.7
Q ss_pred HHhCCHHHHHHHHH-HCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHH
Q 021372 180 RIMGDKSTARETMK-NAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKL 249 (313)
Q Consensus 180 ~~~~DK~~~~~~l~-~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~ 249 (313)
+...|=..|.+++- ++.+ .|.+| .+.....+..+..+...-++++||..|..|.|+++++|..+..++
T Consensus 186 kd~Lsl~~mqkifpeey~f-yp~sw-~lPa~l~df~a~~~~~KrtfivkpDsgaqg~giylisDir~~g~~ 254 (565)
T KOG2158|consen 186 KDILDLLEMQKIFPEEYMF-YPTSW-RLPAPLCDFPASTEIMKRTFIVKPDSGAQGSGIYLISDIREKGEY 254 (565)
T ss_pred HHHHhHHHHHhcChHHhcC-CCccc-cCchHHHHHHHHHHHhcccEEECCCCCCCCcceeeechhhhhhHH
Confidence 44444333444442 3333 34555 577778888888887888999999999999999999776655543
No 383
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.37 E-value=1.6 Score=37.71 Aligned_cols=35 Identities=11% Similarity=0.070 Sum_probs=29.5
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
+.++|||+| +|.+|..+++.+.+.|++|++++.+.
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~ 39 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNE 39 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 357899999 56689999999999999999886543
No 384
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=89.34 E-value=1.5 Score=39.54 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=28.9
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCC-cEEEEecC
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGI-PCVAVYST 103 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~ 103 (313)
...+|+|+|.|..|-.++++|.+.|+ +++++|.+
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 35789999999999999999999996 56777654
No 385
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.32 E-value=1.9 Score=37.59 Aligned_cols=31 Identities=19% Similarity=0.171 Sum_probs=26.4
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEe
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY 101 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~ 101 (313)
.+++||+| +|.+|+.+++.+.+.|++|+++.
T Consensus 4 ~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~ 35 (250)
T PRK08063 4 GKVALVTGSSRGIGKAIALRLAEEGYDIAVNY 35 (250)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEc
Confidence 46899999 56689999999999999987653
No 386
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=89.24 E-value=1.3 Score=41.42 Aligned_cols=91 Identities=20% Similarity=0.208 Sum_probs=53.9
Q ss_pred EEEEEcCCHhHHHHHHHHHHcCCcEEE-EecCCCcchhhhh-hcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372 73 KILVANRGEIAVRVIRTAHEMGIPCVA-VYSTIDKDALHVK-LADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (313)
Q Consensus 73 ~ILIig~g~~a~~v~~al~~~G~~vi~-v~~~~~~~~~~~~-~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~ 150 (313)
+|+|+|.|++|+-.+..++.+|...++ ++.+++....... .....+ ..+ ..+ .....+.++....++|.++-.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~-~~~--~~~--~~~~~~~~~t~g~g~D~vie~ 245 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVV-VNP--SED--DAGAEILELTGGRGADVVIEA 245 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEe-ecC--ccc--cHHHHHHHHhCCCCCCEEEEC
Confidence 899999999999999999999976554 4545555555544 333333 221 111 223444455545679999976
Q ss_pred cCcCcccHHHHHHHHHcC
Q 021372 151 YGFLAENAVFVEMCREHG 168 (313)
Q Consensus 151 ~g~~~e~~~~~~~l~~~g 168 (313)
.|...-.....+++...|
T Consensus 246 ~G~~~~~~~ai~~~r~gG 263 (350)
T COG1063 246 VGSPPALDQALEALRPGG 263 (350)
T ss_pred CCCHHHHHHHHHHhcCCC
Confidence 652211123444444444
No 387
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=89.22 E-value=1.3 Score=38.92 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=29.0
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~ 43 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEYGAEIIINDITA 43 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCH
Confidence 57899999 56689999999999999999886543
No 388
>PRK09242 tropinone reductase; Provisional
Probab=89.22 E-value=1.8 Score=38.08 Aligned_cols=34 Identities=15% Similarity=0.224 Sum_probs=29.0
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.|++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~ 43 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGLGADVLIVARDA 43 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 57899999 46789999999999999999886543
No 389
>PRK12937 short chain dehydrogenase; Provisional
Probab=89.19 E-value=1.9 Score=37.47 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=27.7
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS 102 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~ 102 (313)
.+++||+| ++.+|..+++.+.+.|++++++..
T Consensus 5 ~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~ 37 (245)
T PRK12937 5 NKVAIVTGASRGIGAAIARRLAADGFAVAVNYA 37 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEecC
Confidence 57899999 577899999999999999887753
No 390
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=89.13 E-value=0.62 Score=47.42 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=32.2
Q ss_pred ccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 69 ~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+..+|+|+|+|..|+.++.+|++.|++|.++..++
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 446789999999999999999999999999997643
No 391
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=89.13 E-value=1.6 Score=40.91 Aligned_cols=75 Identities=21% Similarity=0.181 Sum_probs=46.4
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCC-cEEEEecCCCcchhhhhhc-CceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTIDKDALHVKLA-DESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~~~~~~~~~~~a-d~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi 148 (313)
..+|||.|+|.+|..+++.++.+|. +|++++.++........+. +..+ + ... ....+.+.++... ++|+++
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i--~--~~~--~~~~~~i~~~~~~-g~d~vi 264 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATV--N--AGD--PNAVEQVRELTGG-GVDYAF 264 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEe--C--CCc--hhHHHHHHHHhCC-CCCEEE
Confidence 5789999999999999999999999 5887765544433333332 3222 2 111 1123444444333 799999
Q ss_pred eccC
Q 021372 149 PGYG 152 (313)
Q Consensus 149 p~~g 152 (313)
-..+
T Consensus 265 d~~G 268 (371)
T cd08281 265 EMAG 268 (371)
T ss_pred ECCC
Confidence 6543
No 392
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=89.10 E-value=1.7 Score=37.84 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=29.6
Q ss_pred ccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEe
Q 021372 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (313)
Q Consensus 69 ~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~ 101 (313)
.+.++|+|.|-|..|..+++.|.+.|.+++.+.
T Consensus 21 l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vs 53 (217)
T cd05211 21 LEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVS 53 (217)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE
Confidence 457899999999999999999999999888765
No 393
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=89.08 E-value=7.2 Score=37.83 Aligned_cols=67 Identities=18% Similarity=0.124 Sum_probs=36.5
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEcc--CCCCC----CCcCCHHHHHHHHHhcCCCEEeecc
Q 021372 83 AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIG--EAPSS----QSYLLIPNVLSAAISRGCTMLHPGY 151 (313)
Q Consensus 83 a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~--~~~~~----~~~~~~~~l~~~~~~~~id~vip~~ 151 (313)
-..+++.|.+.|++|.++..+......... ...+.+. +.+.. ..+.....+..++++.++|+|+...
T Consensus 80 ~~~l~~~L~~~G~eV~vlt~~~~~~~~~~g--~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~kpDiIh~~~ 152 (465)
T PLN02871 80 FQNFIRYLREMGDEVLVVTTDEGVPQEFHG--AKVIGSWSFPCPFYQKVPLSLALSPRIISEVARFKPDLIHASS 152 (465)
T ss_pred HHHHHHHHHHCCCeEEEEecCCCCCccccC--ceeeccCCcCCccCCCceeeccCCHHHHHHHHhCCCCEEEECC
Confidence 467889999999999999765432111000 0000000 00000 0111223677888889999998643
No 394
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=89.06 E-value=10 Score=30.26 Aligned_cols=118 Identities=14% Similarity=0.188 Sum_probs=69.5
Q ss_pred HHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccCcCcccHHHHHHHH
Q 021372 86 VIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCR 165 (313)
Q Consensus 86 v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g~~~e~~~~~~~l~ 165 (313)
+++.+++.|++|+++.+....... ..+ .+.+.++...+.-+ ..|++.++ .-|.|+. .+..++..+-
T Consensus 2 i~~~a~r~~i~vi~Van~~h~~~~-~~~-~~~i~Vd~g~DaaD----~~I~~~~~--~gDiVIT------qDigLA~~~l 67 (130)
T PF02639_consen 2 IIRVAKRYGIPVIFVANYSHRLPR-SPY-VEMIVVDSGFDAAD----FYIVNHAK--PGDIVIT------QDIGLASLLL 67 (130)
T ss_pred HHHHHHHHCCEEEEEeCCCccCCC-CCC-eEEEEECCCCChHH----HHHHHcCC--CCCEEEE------CCHHHHHHHH
Confidence 678999999999999755433322 122 23444543222221 24555553 3677874 4456777777
Q ss_pred HcCCceeCC-----CHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHh
Q 021372 166 EHGINFIGP-----NPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL 220 (313)
Q Consensus 166 ~~gi~~~g~-----~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~l 220 (313)
..|..++.| +.+.|....+.-.+.+-+++.|..+--. ..-+.++-..|+..+
T Consensus 68 ~Kga~vl~~rG~~yt~~nI~~~L~~R~~~~~lR~~G~~~~gp---k~~~~~d~~~F~~~L 124 (130)
T PF02639_consen 68 AKGAYVLNPRGKEYTKENIDELLAMRHLMAKLRRAGKRTKGP---KKFTKKDRQRFANAL 124 (130)
T ss_pred HCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHHHHH
Confidence 777777643 4556666777777777788888854321 233455555555543
No 395
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=89.01 E-value=2.7 Score=36.34 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=28.4
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+++||+| +|.+|..+++.+.+.|++|+++..+.
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~ 39 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAAQGANVVINYASS 39 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCc
Confidence 47899999 56789999999999999997776443
No 396
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=88.99 E-value=1.4 Score=38.79 Aligned_cols=32 Identities=13% Similarity=0.090 Sum_probs=27.7
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS 102 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~ 102 (313)
.+++||+| ++.+|..+++.+.+.|++|++++.
T Consensus 10 ~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~ 42 (253)
T PRK08993 10 GKVAVVTGCDTGLGQGMALGLAEAGCDIVGINI 42 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEecC
Confidence 57899999 556899999999999999988753
No 397
>PLN02740 Alcohol dehydrogenase-like
Probab=88.96 E-value=2 Score=40.57 Aligned_cols=77 Identities=10% Similarity=0.098 Sum_probs=47.5
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCC-cEEEEecCCCcchhhhhhc-CceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTIDKDALHVKLA-DESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~~~~~~~~~~~a-d~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi 148 (313)
..+|||.|.|.+|..+++.++.+|. +|++++.+.........+- +..+ +. ...+....+.+.++... ++|+++
T Consensus 199 g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i--~~--~~~~~~~~~~v~~~~~~-g~dvvi 273 (381)
T PLN02740 199 GSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFI--NP--KDSDKPVHERIREMTGG-GVDYSF 273 (381)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEE--ec--ccccchHHHHHHHHhCC-CCCEEE
Confidence 5789999999999999999999999 5888865554443333332 3322 21 11000113344444433 799999
Q ss_pred eccC
Q 021372 149 PGYG 152 (313)
Q Consensus 149 p~~g 152 (313)
-..|
T Consensus 274 d~~G 277 (381)
T PLN02740 274 ECAG 277 (381)
T ss_pred ECCC
Confidence 7654
No 398
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.96 E-value=1.4 Score=39.12 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=28.3
Q ss_pred cccEEEEEcCC---HhHHHHHHHHHHcCCcEEEEecC
Q 021372 70 RQEKILVANRG---EIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 70 ~~~~ILIig~g---~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
..|.+||+|++ .+|..+++.|.+.|++|++.+.+
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~ 43 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQS 43 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCc
Confidence 35789999975 48999999999999999887543
No 399
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=88.89 E-value=3.2 Score=40.41 Aligned_cols=88 Identities=14% Similarity=0.125 Sum_probs=57.0
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhh----hhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCE
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH----VKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~----~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~ 146 (313)
.+++.|.+++.....+++.+.++|.+|+.+.+........ ....+..+.++ ..+.+.+.+.+++.++|+
T Consensus 326 Gkrv~i~~g~~~~~~l~~~l~elGmevv~~~t~~~~~~d~~~l~~~~~~~~~v~~-------~~d~~e~~~~i~~~~pDl 398 (456)
T TIGR01283 326 GKKAAIYTGGVKSWSLVSALQDLGMEVVATGTQKGTEEDYARIRELMGEGTVMLD-------DANPRELLKLLLEYKADL 398 (456)
T ss_pred CCEEEEEcCCchHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHcCCCeEEEe-------CCCHHHHHHHHhhcCCCE
Confidence 5788887777788999999999999998875432222111 11122333221 136788999999999999
Q ss_pred EeeccCcCcccHHHHHHHHHcCCcee
Q 021372 147 LHPGYGFLAENAVFVEMCREHGINFI 172 (313)
Q Consensus 147 vip~~g~~~e~~~~~~~l~~~gi~~~ 172 (313)
++.+. .......+.|++++
T Consensus 399 ~ig~~-------~~~~~a~k~giP~i 417 (456)
T TIGR01283 399 LIAGG-------KERYTALKLGIPFC 417 (456)
T ss_pred EEEcc-------chHHHHHhcCCCEE
Confidence 98542 11223346788876
No 400
>PRK09186 flagellin modification protein A; Provisional
Probab=88.88 E-value=1.7 Score=38.12 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=28.9
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~ 38 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGGIVIAADIDK 38 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCh
Confidence 47899999 56689999999999999999886543
No 401
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=88.84 E-value=0.95 Score=46.03 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=31.4
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
..++|+|+|+|+.|+..+..|++.|++|++++...
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 47899999999999999999999999999986544
No 402
>PLN02427 UDP-apiose/xylose synthase
Probab=88.82 E-value=1.9 Score=40.64 Aligned_cols=33 Identities=12% Similarity=-0.007 Sum_probs=27.7
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHc-CCcEEEEecC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEM-GIPCVAVYST 103 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~-G~~vi~v~~~ 103 (313)
.++|||+| .|.+|..+++.|.+. |++|++++..
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~ 48 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVY 48 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecC
Confidence 35799999 588999999999998 5999988643
No 403
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=88.78 E-value=2.4 Score=39.33 Aligned_cols=72 Identities=14% Similarity=-0.048 Sum_probs=42.7
Q ss_pred EEEEEc-CCHhHHHHHHHHHHcCCcEEE-EecCCC--cchhhhhhc--C--ceEEccCCCCCCCcCCHHHHHHHHHhcCC
Q 021372 73 KILVAN-RGEIAVRVIRTAHEMGIPCVA-VYSTID--KDALHVKLA--D--ESVCIGEAPSSQSYLLIPNVLSAAISRGC 144 (313)
Q Consensus 73 ~ILIig-~g~~a~~v~~al~~~G~~vi~-v~~~~~--~~~~~~~~a--d--~~~~v~~~~~~~~~~~~~~l~~~~~~~~i 144 (313)
||||+| +|.+|..+++.|.+.|+++++ ++.... .......+. . ..+.. +..+.+.+.+++.+.++
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------Dl~d~~~~~~~~~~~~~ 74 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYVFEHA-------DICDRAELDRIFAQHQP 74 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHHHhcccCCceEEEEe-------cCCCHHHHHHHHHhcCC
Confidence 799999 577999999999999987443 432111 000000110 1 11212 23456677777776789
Q ss_pred CEEeecc
Q 021372 145 TMLHPGY 151 (313)
Q Consensus 145 d~vip~~ 151 (313)
|.|+-.-
T Consensus 75 d~vih~A 81 (352)
T PRK10084 75 DAVMHLA 81 (352)
T ss_pred CEEEECC
Confidence 9887543
No 404
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=88.77 E-value=0.97 Score=37.78 Aligned_cols=34 Identities=15% Similarity=0.145 Sum_probs=29.0
Q ss_pred cccEEEEEcCCHh-HHHHHHHHHHcCCcEEEEecC
Q 021372 70 RQEKILVANRGEI-AVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 70 ~~~~ILIig~g~~-a~~v~~al~~~G~~vi~v~~~ 103 (313)
..++|||+|+|.. +..+++.|.+.|.+|+++..+
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 3689999999985 888999999999988887644
No 405
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=88.77 E-value=1.2 Score=39.41 Aligned_cols=32 Identities=25% Similarity=0.270 Sum_probs=27.5
Q ss_pred cccEEEEEcC---CHhHHHHHHHHHHcCCcEEEEe
Q 021372 70 RQEKILVANR---GEIAVRVIRTAHEMGIPCVAVY 101 (313)
Q Consensus 70 ~~~~ILIig~---g~~a~~v~~al~~~G~~vi~v~ 101 (313)
+.+++||+|+ +.+|..+++.+.+.|++|++.+
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~ 39 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITY 39 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEe
Confidence 3578999996 4799999999999999998764
No 406
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=88.73 E-value=1.8 Score=42.31 Aligned_cols=34 Identities=12% Similarity=0.106 Sum_probs=30.8
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.++|+|+|+|+.|+..+..|.+.|++|++++..+
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~ 176 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERAD 176 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 5789999999999999999999999999997543
No 407
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=88.66 E-value=0.67 Score=43.03 Aligned_cols=34 Identities=15% Similarity=0.108 Sum_probs=30.6
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
|+++|.|+|.|.+|..++..|.+.|++|++++.+
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 4678999999999999999999999999998653
No 408
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.65 E-value=1.9 Score=37.99 Aligned_cols=34 Identities=24% Similarity=0.252 Sum_probs=28.9
Q ss_pred cccEEEEEcCC---HhHHHHHHHHHHcCCcEEEEecC
Q 021372 70 RQEKILVANRG---EIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 70 ~~~~ILIig~g---~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
+.+++||+|++ .+|..+++.+.+.|++|++++..
T Consensus 4 ~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~ 40 (256)
T PRK12748 4 MKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWS 40 (256)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCC
Confidence 45789999975 58999999999999999988643
No 409
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=88.63 E-value=4.1 Score=35.64 Aligned_cols=121 Identities=9% Similarity=0.024 Sum_probs=61.6
Q ss_pred ccccEEEEEcCCHhHHHHHHHHHHcCCc-EEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372 69 CRQEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (313)
Q Consensus 69 ~~~~~ILIig~g~~a~~v~~al~~~G~~-vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v 147 (313)
-...+|+|+|.|.+|..+++.|.+.|+. ++++|.+. .. .+.+...+++.. .+. ...-.+.+.+.+++...+.-
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~--ve-~sNL~Rq~l~~~--~di-G~~Ka~~~~~~l~~~np~~~ 92 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV--VE-LSNLQRQILHTE--ADV-GQPKAEAAAERLRAINPDVE 92 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE--Ec-CcccccccccCh--hhC-CChHHHHHHHHHHHhCCCCE
Confidence 3467899999999999999999999995 45554332 22 123333333211 011 11234566666666655533
Q ss_pred eeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCC
Q 021372 148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTV 200 (313)
Q Consensus 148 ip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p 200 (313)
+-.+..........+.+....+-+...+.- ..+...-+++.++++|..
T Consensus 93 i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~-----~~r~~l~~~~~~~~ip~i 140 (228)
T cd00757 93 IEAYNERLDAENAEELIAGYDLVLDCTDNF-----ATRYLINDACVKLGKPLV 140 (228)
T ss_pred EEEecceeCHHHHHHHHhCCCEEEEcCCCH-----HHHHHHHHHHHHcCCCEE
Confidence 322211101122333444444433222211 123445566677777654
No 410
>PRK05854 short chain dehydrogenase; Provisional
Probab=88.62 E-value=2.7 Score=38.53 Aligned_cols=35 Identities=9% Similarity=0.157 Sum_probs=29.2
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
..++++|+| ++.+|..+++.|.+.|++|+++..+.
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~ 48 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNR 48 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 367899999 55589999999999999999886543
No 411
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=88.55 E-value=2.1 Score=41.29 Aligned_cols=86 Identities=19% Similarity=0.193 Sum_probs=56.5
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhh---------cCceEEccCCCCCCCcCCHHHHHHHHHh
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL---------ADESVCIGEAPSSQSYLLIPNVLSAAIS 141 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~---------ad~~~~v~~~~~~~~~~~~~~l~~~~~~ 141 (313)
.+++.|.|....+..+++.|.+.|.++..+...........++ ....+ . ..+...+.+.+++
T Consensus 299 gk~v~i~~~~~~~~~l~~~L~e~G~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v-~--------~~d~~el~~~i~~ 369 (428)
T cd01965 299 GKRVAIAGDPDLLLGLSRFLLEMGAEPVAAVTGTDNPPFEKRMELLASLEGIPAEVV-F--------VGDLWDLESLAKE 369 (428)
T ss_pred CCEEEEEcChHHHHHHHHHHHHcCCcceEEEEcCCCchhHHHHHHhhhhcCCCceEE-E--------CCCHHHHHHHhhc
Confidence 5889999988889999999999999998765433222211111 11111 1 1457788888888
Q ss_pred cCCCEEeeccCcCcccHHHHHHHHHcCCcee
Q 021372 142 RGCTMLHPGYGFLAENAVFVEMCREHGINFI 172 (313)
Q Consensus 142 ~~id~vip~~g~~~e~~~~~~~l~~~gi~~~ 172 (313)
.++|.++... ......++.|++++
T Consensus 370 ~~pdliig~~-------~~~~~a~~~~ip~i 393 (428)
T cd01965 370 EPVDLLIGNS-------HGRYLARDLGIPLV 393 (428)
T ss_pred cCCCEEEECc-------hhHHHHHhcCCCEE
Confidence 8999998542 22344456787775
No 412
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=88.49 E-value=1.1 Score=47.69 Aligned_cols=35 Identities=14% Similarity=0.159 Sum_probs=31.4
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
..++|+|+|+|+.|+..+..|+++|++|++++..+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~ 572 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREE 572 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 36889999999999999999999999999997543
No 413
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=88.49 E-value=2.5 Score=37.45 Aligned_cols=34 Identities=12% Similarity=0.053 Sum_probs=28.8
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~ 44 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYAKAGATIVFNDINQ 44 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH
Confidence 57899999 55689999999999999999886543
No 414
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=88.49 E-value=0.66 Score=43.63 Aligned_cols=36 Identities=8% Similarity=0.140 Sum_probs=31.8
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~ 105 (313)
|...|+|+|+|+.|..++..|.+.|++|.+++..+.
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAP 39 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 456899999999999999999999999999976544
No 415
>PRK07045 putative monooxygenase; Reviewed
Probab=88.48 E-value=0.82 Score=43.15 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=31.1
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~ 105 (313)
..+|+|+|+|+.|...+..|++.|++|++++..+.
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAAR 39 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 45799999999999999999999999999975543
No 416
>PRK07677 short chain dehydrogenase; Provisional
Probab=88.47 E-value=1.9 Score=37.87 Aligned_cols=33 Identities=12% Similarity=0.155 Sum_probs=27.9
Q ss_pred cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~ 35 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTK 35 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 6799999 55589999999999999998886543
No 417
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=88.45 E-value=0.67 Score=38.41 Aligned_cols=34 Identities=12% Similarity=0.243 Sum_probs=27.7
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.|+++|+|-|..|..++++|+.+|.+|++.+.+|
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 6889999999999999999999999999996655
No 418
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.42 E-value=2.9 Score=36.42 Aligned_cols=31 Identities=13% Similarity=0.085 Sum_probs=26.6
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEe
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY 101 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~ 101 (313)
.+++||+| ++.+|..+++.+.+.|+++++..
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~ 37 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNA 37 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence 47899999 55689999999999999987754
No 419
>PRK08244 hypothetical protein; Provisional
Probab=88.42 E-value=0.7 Score=45.29 Aligned_cols=35 Identities=6% Similarity=0.200 Sum_probs=31.1
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~ 105 (313)
...|+|+|+|+.|+.++..|.+.|++|.+++..+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 45799999999999999999999999999976543
No 420
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=88.41 E-value=0.98 Score=43.71 Aligned_cols=39 Identities=10% Similarity=0.223 Sum_probs=32.7
Q ss_pred cCcccccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372 64 ALKVTCRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS 102 (313)
Q Consensus 64 ~~~~~~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~ 102 (313)
+.+.++..+||||+| .|.+|..+++.|.+.|++|++++.
T Consensus 113 ~~~~~~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr 152 (436)
T PLN02166 113 PVGIGRKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDN 152 (436)
T ss_pred CcccccCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 345555567899999 678999999999999999999864
No 421
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.38 E-value=4 Score=35.56 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=62.7
Q ss_pred ccEEEEEc--CCHhHHHHHHHHHHcCCcEEEEecCCCcchh-hhhhcCceEEccCCCCCCCcCCHHHHHHHHHhc---CC
Q 021372 71 QEKILVAN--RGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL-HVKLADESVCIGEAPSSQSYLLIPNVLSAAISR---GC 144 (313)
Q Consensus 71 ~~~ILIig--~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~-~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~---~i 144 (313)
.++|||+| .|.+|..+++.+.+.|+.|++......+... ...+--..+.+| ..+..++..+....++. ++
T Consensus 7 ~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~gl~~~kLD----V~~~~~V~~v~~evr~~~~Gkl 82 (289)
T KOG1209|consen 7 PKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFGLKPYKLD----VSKPEEVVTVSGEVRANPDGKL 82 (289)
T ss_pred CCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhhCCeeEEec----cCChHHHHHHHHHHhhCCCCce
Confidence 58899999 4558999999999999999987544332221 112222333333 11123344444555542 35
Q ss_pred CEEeeccC----cCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCC
Q 021372 145 TMLHPGYG----FLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAG 196 (313)
Q Consensus 145 d~vip~~g----~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~G 196 (313)
|.++-.-| +..-+....+.-.-..+.++| .+-..|.....+.++.|
T Consensus 83 d~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG------~irM~~a~~h~likaKG 132 (289)
T KOG1209|consen 83 DLLYNNAGQSCTFPALDATIAAVEQCFKVNVFG------HIRMCRALSHFLIKAKG 132 (289)
T ss_pred EEEEcCCCCCcccccccCCHHHHHhhhccceee------eehHHHHHHHHHHHccc
Confidence 66654322 111112233333345677776 23345666666666666
No 422
>PRK06114 short chain dehydrogenase; Provisional
Probab=88.32 E-value=3.1 Score=36.55 Aligned_cols=33 Identities=12% Similarity=0.080 Sum_probs=28.6
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
.+++||+| ++.+|..+++.+.+.|++|++++.+
T Consensus 8 ~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~ 41 (254)
T PRK06114 8 GQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLR 41 (254)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 57899999 5568999999999999999988654
No 423
>PRK05872 short chain dehydrogenase; Provisional
Probab=88.30 E-value=2.5 Score=38.32 Aligned_cols=34 Identities=18% Similarity=0.172 Sum_probs=29.1
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 43 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGAKLALVDLEE 43 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 57899999 56689999999999999999886544
No 424
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=88.28 E-value=1.6 Score=39.90 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=31.0
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
..++++|+|.|..|+.+++.|+++|.+|++++.++
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 36899999999999999999999999999886553
No 425
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=88.25 E-value=1.8 Score=40.49 Aligned_cols=33 Identities=21% Similarity=0.155 Sum_probs=27.4
Q ss_pred cccEEEEEcC-CHhHHHHHHHHHHc-CCcEEEEec
Q 021372 70 RQEKILVANR-GEIAVRVIRTAHEM-GIPCVAVYS 102 (313)
Q Consensus 70 ~~~~ILIig~-g~~a~~v~~al~~~-G~~vi~v~~ 102 (313)
||+||+|+|+ |..|..+++.+.++ +++++.+.+
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~ 35 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTS 35 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEEC
Confidence 4579999995 88999999999887 788877654
No 426
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=88.23 E-value=0.68 Score=43.62 Aligned_cols=34 Identities=15% Similarity=0.126 Sum_probs=30.3
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
...|+|+|+|..|..++.+|.+.|++|.+++..+
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~ 40 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEP 40 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 3469999999999999999999999999997654
No 427
>PRK12746 short chain dehydrogenase; Provisional
Probab=88.21 E-value=2.4 Score=37.04 Aligned_cols=31 Identities=16% Similarity=0.119 Sum_probs=26.8
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEe
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY 101 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~ 101 (313)
.++++|+| +|.+|..+++.+.+.|++|+++.
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~G~~v~i~~ 37 (254)
T PRK12746 6 GKVALVTGASRGIGRAIAMRLANDGALVAIHY 37 (254)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEc
Confidence 47899999 66789999999999999987753
No 428
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.16 E-value=2.9 Score=38.58 Aligned_cols=78 Identities=17% Similarity=0.130 Sum_probs=50.9
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCc-EEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHh----cCC
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS----RGC 144 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~-vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~----~~i 144 (313)
+..++||+|+|++|+-....|+..|.. |++++..+.......++-...+. +... .+ .++.+.+.+++ ..+
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~--~~~~-~~--~~~~~~~~v~~~~g~~~~ 243 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTD--PSSH-KS--SPQELAELVEKALGKKQP 243 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEe--eccc-cc--cHHHHHHHHHhhccccCC
Confidence 367899999999999999999999985 56665566666665665444442 1111 11 35555555543 347
Q ss_pred CEEeeccC
Q 021372 145 TMLHPGYG 152 (313)
Q Consensus 145 d~vip~~g 152 (313)
|..+-..|
T Consensus 244 d~~~dCsG 251 (354)
T KOG0024|consen 244 DVTFDCSG 251 (354)
T ss_pred CeEEEccC
Confidence 88886554
No 429
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=88.13 E-value=0.6 Score=39.40 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=28.6
Q ss_pred EEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCc
Q 021372 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK 106 (313)
Q Consensus 73 ~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~ 106 (313)
||.|+|+|.+|..++..+...|++|++++.++..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~ 34 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEA 34 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHH
Confidence 6899999999999999999999999999765543
No 430
>PRK07538 hypothetical protein; Provisional
Probab=88.11 E-value=0.78 Score=43.79 Aligned_cols=33 Identities=27% Similarity=0.314 Sum_probs=29.9
Q ss_pred cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
++|+|+|+|..|+.++.+|++.|++|++++..+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAP 33 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 469999999999999999999999999997654
No 431
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=88.11 E-value=0.76 Score=45.66 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=27.2
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~ 105 (313)
.|||.|||+|..|+..++.|.+.|++++++....+
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~ 35 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDD 35 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCC
Confidence 37899999999999999999999999999876544
No 432
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=88.10 E-value=1.7 Score=39.67 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=28.9
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.++|||+| +|.+|..+++.|.+.|++|+++..+.
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~ 38 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDP 38 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 36899999 57899999999999999998876443
No 433
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.99 E-value=6 Score=38.11 Aligned_cols=34 Identities=12% Similarity=0.190 Sum_probs=30.0
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.++|+|+|-|.+|...++.|++.|++|.+.|...
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~ 39 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI 39 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 5789999999999999999999999999887544
No 434
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=87.96 E-value=0.83 Score=44.57 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=30.8
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.++|+|||+|+.|+..++.|++.|++|+++....
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~ 43 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREK 43 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCC
Confidence 5789999999999999999999999999987544
No 435
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=87.95 E-value=3.4 Score=40.07 Aligned_cols=87 Identities=14% Similarity=0.023 Sum_probs=51.7
Q ss_pred ccEEEEEcCCHhHHHHHHHHHH---cCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372 71 QEKILVANRGEIAVRVIRTAHE---MGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~---~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v 147 (313)
.++++|+|+|..+..+++.+++ .|++++.+-++.... .........+ ... +.+.+.++++++|.|
T Consensus 125 ~rrvlIiGag~~~~~l~~~l~~~~~~g~~vvGfidd~~~~-~~~~i~g~pV----------lg~-~~l~~~i~~~~id~V 192 (456)
T TIGR03022 125 GRPAVIIGAGQNAAILYRALQSNPQLGLRPLAVVDTDPAA-SGRLLTGLPV----------VGA-DDALRLYARTRYAYV 192 (456)
T ss_pred CceEEEEeCCHHHHHHHHHHhhCccCCcEEEEEEeCCccc-cccccCCCcc----------cCh-hHHHHHHHhCCCCEE
Confidence 4679999999999999999874 578887654332111 0011111111 122 567788888889977
Q ss_pred eeccCcCcc--cHHHHHHHHHcCC
Q 021372 148 HPGYGFLAE--NAVFVEMCREHGI 169 (313)
Q Consensus 148 ip~~g~~~e--~~~~~~~l~~~gi 169 (313)
+...+.... ...+.+.+++.++
T Consensus 193 iIAip~~~~~~~~~ll~~l~~~~v 216 (456)
T TIGR03022 193 IVAMPGTQAEDMARLVRKLGALHF 216 (456)
T ss_pred EEecCCccHHHHHHHHHHHHhCCC
Confidence 665432222 1345556666666
No 436
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=87.93 E-value=1.1 Score=31.29 Aligned_cols=30 Identities=7% Similarity=-0.008 Sum_probs=26.0
Q ss_pred EEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372 76 VANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (313)
Q Consensus 76 Iig~g~~a~~v~~al~~~G~~vi~v~~~~~ 105 (313)
|+|+|..|+..+..|++.|++|.+++....
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 799999999999999999999999976544
No 437
>PRK10262 thioredoxin reductase; Provisional
Probab=87.92 E-value=0.83 Score=41.99 Aligned_cols=35 Identities=17% Similarity=0.222 Sum_probs=30.6
Q ss_pred cccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEec
Q 021372 68 TCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (313)
Q Consensus 68 ~~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~ 102 (313)
+...++|+|+|+|+.|+..+..|.++|+++++++.
T Consensus 3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~ 37 (321)
T PRK10262 3 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITG 37 (321)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEe
Confidence 33467899999999999999999999999988863
No 438
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=87.92 E-value=1.9 Score=37.52 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=28.8
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~ 37 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNR 37 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCH
Confidence 57899999 56689999999999999999886443
No 439
>PRK08328 hypothetical protein; Provisional
Probab=87.91 E-value=6.6 Score=34.48 Aligned_cols=121 Identities=10% Similarity=0.018 Sum_probs=61.2
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCc-EEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~-vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi 148 (313)
...+|+|+|.|..|..+++.|.+.|+. ++++|.+.-. .+.+..+.++.. .+.....-.+...+.+++.+.+..+
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve---~sNL~Rq~l~~~--~dvG~~~k~~~a~~~l~~~np~v~v 100 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPE---LSNLNRQILHWE--EDLGKNPKPLSAKWKLERFNSDIKI 100 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccC---hhhhccccccCh--hhcCchHHHHHHHHHHHHhCCCCEE
Confidence 357899999999999999999999996 4556443322 233333333211 0001001122233444555566555
Q ss_pred eccC-cCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCC
Q 021372 149 PGYG-FLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVP 201 (313)
Q Consensus 149 p~~g-~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~ 201 (313)
-.+. ...+ ....+.++...+-+-..+.. ..+....+++.++|+|...
T Consensus 101 ~~~~~~~~~-~~~~~~l~~~D~Vid~~d~~-----~~r~~l~~~~~~~~ip~i~ 148 (231)
T PRK08328 101 ETFVGRLSE-ENIDEVLKGVDVIVDCLDNF-----ETRYLLDDYAHKKGIPLVH 148 (231)
T ss_pred EEEeccCCH-HHHHHHHhcCCEEEECCCCH-----HHHHHHHHHHHHcCCCEEE
Confidence 3321 2222 22334454444433322111 1233445667788888654
No 440
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=87.87 E-value=3.6 Score=35.65 Aligned_cols=36 Identities=14% Similarity=0.167 Sum_probs=30.4
Q ss_pred cccccEEEEEcCCHhHHHHHHHHHHcCCc-EEEEecC
Q 021372 68 TCRQEKILVANRGEIAVRVIRTAHEMGIP-CVAVYST 103 (313)
Q Consensus 68 ~~~~~~ILIig~g~~a~~v~~al~~~G~~-vi~v~~~ 103 (313)
+-...+|+|+|.|.+|-.+++.|.+.|+. ++++|.+
T Consensus 25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 25 KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 33467899999999999999999999997 7777654
No 441
>PRK08013 oxidoreductase; Provisional
Probab=87.87 E-value=0.72 Score=43.86 Aligned_cols=35 Identities=11% Similarity=0.243 Sum_probs=31.0
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~ 105 (313)
...|+|+|+|+.|..++-+|.+.|++|.+++..+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 35799999999999999999999999999976543
No 442
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=87.82 E-value=0.62 Score=44.26 Aligned_cols=34 Identities=9% Similarity=0.206 Sum_probs=30.2
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
...|+|+|+|+.|..++.+|.+.|++|++++..+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 3579999999999999999999999999997543
No 443
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=87.81 E-value=1.7 Score=37.87 Aligned_cols=33 Identities=15% Similarity=0.094 Sum_probs=28.4
Q ss_pred cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
+++||+| .|.+|..+++.+.+.|++|++++.+.
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~ 35 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGANVVVNDLGE 35 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5799999 56789999999999999999986543
No 444
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=87.81 E-value=0.67 Score=43.91 Aligned_cols=33 Identities=6% Similarity=0.130 Sum_probs=30.4
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
...|+|+|+|+.|+.++-+|++.|++|.+++..
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 467999999999999999999999999999754
No 445
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=87.79 E-value=2.3 Score=39.46 Aligned_cols=38 Identities=24% Similarity=0.334 Sum_probs=31.7
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcch
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDA 108 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~ 108 (313)
..+|||.|+|.+|+.+++.++.+|.+|++++.++....
T Consensus 167 g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~ 204 (349)
T TIGR03201 167 GDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLE 204 (349)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHH
Confidence 57899999999999999999999999888765544433
No 446
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=87.76 E-value=1.4 Score=42.81 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=31.3
Q ss_pred ccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 69 ~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
.|...|+|+|+|+.|...+..|.+.|++|.+++..
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~ 71 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIERK 71 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 34678999999999999999999999999999754
No 447
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.76 E-value=3.8 Score=39.26 Aligned_cols=34 Identities=15% Similarity=0.287 Sum_probs=29.8
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.++|+|+|-|.+|..+++.+++.|++|++.|.+.
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~ 36 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL 36 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999988887543
No 448
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.74 E-value=0.78 Score=45.18 Aligned_cols=36 Identities=14% Similarity=0.350 Sum_probs=31.7
Q ss_pred cccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 68 TCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 68 ~~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
..++++|+|||+|..|+..++-|...|++|+++...
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEAR 47 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEAR 47 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEecc
Confidence 334789999999999999999999999999998653
No 449
>PLN02206 UDP-glucuronate decarboxylase
Probab=87.73 E-value=0.83 Score=44.28 Aligned_cols=38 Identities=13% Similarity=0.238 Sum_probs=31.8
Q ss_pred CcccccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372 65 LKVTCRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS 102 (313)
Q Consensus 65 ~~~~~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~ 102 (313)
++.++..+||||+| .|.+|..+++.|.+.|++|++++.
T Consensus 113 ~~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~ 151 (442)
T PLN02206 113 LGLKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDN 151 (442)
T ss_pred cccccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeC
Confidence 34455568999999 688999999999999999998863
No 450
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=87.72 E-value=0.82 Score=48.32 Aligned_cols=33 Identities=18% Similarity=0.136 Sum_probs=30.9
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEec
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~ 102 (313)
..+||+|+|+|+.|+..+..|.+.|++|++++.
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~ 414 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDG 414 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcc
Confidence 478999999999999999999999999999975
No 451
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=87.63 E-value=2.2 Score=38.43 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=28.8
Q ss_pred EEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372 73 KILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID 105 (313)
Q Consensus 73 ~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~ 105 (313)
+|||+| .|.+|..+++.|.+.|++|+.++....
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~ 35 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRD 35 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCc
Confidence 399999 588999999999999999999975443
No 452
>PLN02650 dihydroflavonol-4-reductase
Probab=87.61 E-value=2.4 Score=39.33 Aligned_cols=34 Identities=21% Similarity=0.197 Sum_probs=29.1
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.++|||+| +|.+|..+++.|.+.|++|+++..+.
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~ 39 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGYTVRATVRDP 39 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCc
Confidence 57899999 57799999999999999999876443
No 453
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=87.60 E-value=2.5 Score=37.12 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=29.3
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~ 45 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAGAHVLVNGRNA 45 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 57899999 56689999999999999999987654
No 454
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=87.60 E-value=4 Score=38.02 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=25.7
Q ss_pred ccEEEEEcCCHhHHHHH-HHHHHcCCcEEEEec
Q 021372 71 QEKILVANRGEIAVRVI-RTAHEMGIPCVAVYS 102 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~-~al~~~G~~vi~v~~ 102 (313)
.-||.++|+|..|..++ +..+-.|++++++..
T Consensus 17 PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd 49 (438)
T COG4091 17 PIRVGLIGAGEMGTGIVTQIASMPGMEVVAISD 49 (438)
T ss_pred ceEEEEecccccchHHHHHHhhcCCceEEEEec
Confidence 46899999999998877 445556999999863
No 455
>PRK12831 putative oxidoreductase; Provisional
Probab=87.59 E-value=0.96 Score=44.13 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=30.8
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
..++|+|+|+|+.|+..+..|+++|++|++++..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~ 172 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEAL 172 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 4688999999999999999999999999999643
No 456
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=87.59 E-value=2.6 Score=36.77 Aligned_cols=32 Identities=13% Similarity=0.096 Sum_probs=27.6
Q ss_pred cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
+++||+| ++.+|..+++.|.+.|++|++++.+
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~ 33 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLN 33 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4689999 5678999999999999999888654
No 457
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=87.57 E-value=5.3 Score=36.88 Aligned_cols=151 Identities=21% Similarity=0.223 Sum_probs=86.1
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccCcCcc---cHH
Q 021372 83 AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAE---NAV 159 (313)
Q Consensus 83 a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g~~~e---~~~ 159 (313)
...-+++|.+.|.+++=+.......+.....-.+...+ |...++.+.-.++-.+.+.++|.+=...|-... ...
T Consensus 38 Tv~QI~~L~~aG~dIVRvtv~~~e~A~A~~~Ik~~~~v---PLVaDiHf~~rla~~~~~~g~~k~RINPGNig~~~~v~~ 114 (361)
T COG0821 38 TVAQIKALERAGCDIVRVTVPDMEAAEALKEIKQRLNV---PLVADIHFDYRLALEAAECGVDKVRINPGNIGFKDRVRE 114 (361)
T ss_pred HHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCC---CEEEEeeccHHHHHHhhhcCcceEEECCcccCcHHHHHH
Confidence 45667899999999887754433333222221111112 122222222455555666777766544432222 245
Q ss_pred HHHHHHHcCCce-eCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEE
Q 021372 160 FVEMCREHGINF-IGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMR 238 (313)
Q Consensus 160 ~~~~l~~~gi~~-~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~ 238 (313)
+.+.+.+.|+++ +|-++-++ -+++++++|-|+|+. ++.|.=.-.+.+++++|+=++= -.
T Consensus 115 vVe~Ak~~g~piRIGVN~GSL--------ek~~~~ky~~pt~ea---lveSAl~~a~~~e~l~f~~i~i---------S~ 174 (361)
T COG0821 115 VVEAAKDKGIPIRIGVNAGSL--------EKRLLEKYGGPTPEA---LVESALEHAELLEELGFDDIKV---------SV 174 (361)
T ss_pred HHHHHHHcCCCEEEecccCch--------hHHHHHHhcCCCHHH---HHHHHHHHHHHHHHCCCCcEEE---------EE
Confidence 667777889887 56554433 356777777888775 5666555556777888872211 12
Q ss_pred EeCCHHHHHHHHHHHHHH
Q 021372 239 LAKEPDEFVKLLQQAKSE 256 (313)
Q Consensus 239 ~v~~~~el~~~~~~~~~~ 256 (313)
+..+..++.+++..+...
T Consensus 175 K~Sdv~~~v~aYr~lA~~ 192 (361)
T COG0821 175 KASDVQLMVAAYRLLAKR 192 (361)
T ss_pred EcCCHHHHHHHHHHHHHh
Confidence 456677777777766543
No 458
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=87.53 E-value=0.87 Score=43.02 Aligned_cols=32 Identities=13% Similarity=0.093 Sum_probs=29.5
Q ss_pred cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
.+|+|+|+|+.|..++.+|.+.|++|++++..
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~ 35 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGG 35 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCC
Confidence 57999999999999999999999999999744
No 459
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=87.47 E-value=0.69 Score=43.59 Aligned_cols=33 Identities=9% Similarity=0.316 Sum_probs=30.1
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHc---CCcEEEEec
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEM---GIPCVAVYS 102 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~---G~~vi~v~~ 102 (313)
++.+|+|+|+|+.|..++-.|++. |++|++++.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~ 37 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEA 37 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeC
Confidence 356799999999999999999998 999999975
No 460
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=87.45 E-value=1 Score=37.93 Aligned_cols=30 Identities=7% Similarity=0.160 Sum_probs=27.8
Q ss_pred EEEEEcCCHhHHHHHHHHHHcCCcEEEEec
Q 021372 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (313)
Q Consensus 73 ~ILIig~g~~a~~v~~al~~~G~~vi~v~~ 102 (313)
+|+|+|+|+.|+..+..|.+.|+++++++.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~ 30 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEK 30 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEec
Confidence 589999999999999999999999999943
No 461
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=87.45 E-value=2.3 Score=33.41 Aligned_cols=78 Identities=10% Similarity=0.115 Sum_probs=44.7
Q ss_pred EEEEEcCCH--hHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCC--cCCHHHHHHHHHhcCCCEEe
Q 021372 73 KILVANRGE--IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQS--YLLIPNVLSAAISRGCTMLH 148 (313)
Q Consensus 73 ~ILIig~g~--~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~--~~~~~~l~~~~~~~~id~vi 148 (313)
|||+++... ....+++.|++.|++|.++..............-..+.++ .+.... +...-.+..++++.++|.|+
T Consensus 1 KIl~i~~~~~~~~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~~~i~~~~~~-~~~k~~~~~~~~~~l~k~ik~~~~DvIh 79 (139)
T PF13477_consen 1 KILLIGNTPSTFIYNLAKELKKRGYDVHIITPRNDYEKYEIIEGIKVIRLP-SPRKSPLNYIKYFRLRKIIKKEKPDVIH 79 (139)
T ss_pred CEEEEecCcHHHHHHHHHHHHHCCCEEEEEEcCCCchhhhHhCCeEEEEec-CCCCccHHHHHHHHHHHHhccCCCCEEE
Confidence 467777443 4678899999999999999874443111111111222221 111111 11233566778889999998
Q ss_pred ecc
Q 021372 149 PGY 151 (313)
Q Consensus 149 p~~ 151 (313)
...
T Consensus 80 ~h~ 82 (139)
T PF13477_consen 80 CHT 82 (139)
T ss_pred Eec
Confidence 643
No 462
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.43 E-value=5.9 Score=38.38 Aligned_cols=117 Identities=18% Similarity=0.189 Sum_probs=66.0
Q ss_pred EEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhh--hhhcC--ceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH--VKLAD--ESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (313)
Q Consensus 73 ~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~--~~~ad--~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi 148 (313)
||+|+|.|..|+..++.|.+.|++|.+.+......... ..+.+ -.+..+. ..+.+.+.... .++|.|+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~------~~~~~~~~~~~--~~~d~vv 73 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGK------PLELESFQPWL--DQPDLVV 73 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECC------ccchhhhhHHh--hcCCEEE
Confidence 69999999999999999999999999987554322211 11211 1222211 11122222222 3478888
Q ss_pred eccCcCcccHHHHHHHHHcCCceeCCCHHHH-HHhC-----------CH----HHHHHHHHHCCCCC
Q 021372 149 PGYGFLAENAVFVEMCREHGINFIGPNPDSI-RIMG-----------DK----STARETMKNAGVPT 199 (313)
Q Consensus 149 p~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i-~~~~-----------DK----~~~~~~l~~~Gip~ 199 (313)
...+....+. ....+.+.|+++.+ ..+.. .... -| ....++|+..|...
T Consensus 74 ~s~gi~~~~~-~~~~a~~~~i~v~~-~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~~g~~~ 138 (459)
T PRK02705 74 VSPGIPWDHP-TLVELRERGIEVIG-EIELAWRALKHIPWVGITGTNGKTTVTALLAHILQAAGLNA 138 (459)
T ss_pred ECCCCCCCCH-HHHHHHHcCCcEEE-hHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcCCCe
Confidence 7654433333 33444578888873 44433 2221 23 34457788888654
No 463
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=87.39 E-value=7.5 Score=35.42 Aligned_cols=107 Identities=19% Similarity=0.158 Sum_probs=64.1
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC--cch--------hhhh--h---cCceEEccCCCCCCCcCCHHH
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID--KDA--------LHVK--L---ADESVCIGEAPSSQSYLLIPN 134 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~--~~~--------~~~~--~---ad~~~~v~~~~~~~~~~~~~~ 134 (313)
..+|+|.| .|..+..+.+.+...|.+ ++...++. ... .... . .|-.+..-| ......
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~~v~G~~~y~sv~dlp~~~~~Dlavi~vp------a~~v~~ 78 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGTTVLGLPVFDSVKEAVEETGANASVIFVP------APFAAD 78 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCcceecCeeccCCHHHHhhccCCCEEEEecC------HHHHHH
Confidence 46899999 888899999999999999 44444444 111 0000 0 233222211 122445
Q ss_pred HHHHHHhcCCCEEeec-cCcCccc--HHHHHHHHHcCCceeCCCHHHHHHhCCH
Q 021372 135 VLSAAISRGCTMLHPG-YGFLAEN--AVFVEMCREHGINFIGPNPDSIRIMGDK 185 (313)
Q Consensus 135 l~~~~~~~~id~vip~-~g~~~e~--~~~~~~l~~~gi~~~g~~~~~i~~~~DK 185 (313)
+++.|.+.++..++.. .|+ .|. ..+.+..++.|++++||+---+-...++
T Consensus 79 ~l~e~~~~Gvk~avIis~Gf-~e~~~~~l~~~a~~~girilGPNc~Giin~~~~ 131 (286)
T TIGR01019 79 AIFEAIDAGIELIVCITEGI-PVHDMLKVKRYMEESGTRLIGPNCPGIITPGEC 131 (286)
T ss_pred HHHHHHHCCCCEEEEECCCC-CHHHHHHHHHHHHHcCCEEECCCCceEEccccc
Confidence 5555666788766543 333 333 3667778888999999887655444443
No 464
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=87.39 E-value=0.79 Score=43.59 Aligned_cols=34 Identities=6% Similarity=0.181 Sum_probs=30.7
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
..+|+|+|+|+.|..++.+|.+.|++|.+++..+
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 51 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQP 51 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCC
Confidence 4679999999999999999999999999997654
No 465
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=87.36 E-value=3.7 Score=35.70 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=27.0
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEe
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY 101 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~ 101 (313)
.+++||+| ++.+|..+++.+.+.|++|+++.
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~ 37 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQEGAKVVINY 37 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEc
Confidence 57899999 66689999999999999998754
No 466
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.31 E-value=14 Score=35.56 Aligned_cols=113 Identities=11% Similarity=0.115 Sum_probs=64.9
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHc--CCcEEEEecCCCcchhhhhhcC-ceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372 71 QEKILVANRGEIAVRVIRTAHEM--GIPCVAVYSTIDKDALHVKLAD-ESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~--G~~vi~v~~~~~~~~~~~~~ad-~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v 147 (313)
+++|+|+|-|.+|...++.+.+. |++|.+.|........ ..+.. -.+..+ ..+.+.+ .++|.|
T Consensus 7 ~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~-~~l~~g~~~~~g-------~~~~~~~------~~~d~v 72 (438)
T PRK04663 7 IKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQ-EQLPEDVELHSG-------GWNLEWL------LEADLV 72 (438)
T ss_pred CceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhH-HHhhcCCEEEeC-------CCChHHh------ccCCEE
Confidence 36899999999999999999887 5888887654432211 11221 112121 0122222 347888
Q ss_pred eeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhC-----------C----HHHHHHHHHHCCCCC
Q 021372 148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMG-----------D----KSTARETMKNAGVPT 199 (313)
Q Consensus 148 ip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~-----------D----K~~~~~~l~~~Gip~ 199 (313)
+...+....+..+ ..+.+.|+++. ...+.+.... - +.....+|++.|..+
T Consensus 73 V~SpgI~~~~p~~-~~a~~~gi~i~-~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~ 137 (438)
T PRK04663 73 VTNPGIALATPEI-QQVLAAGIPVV-GDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGVKV 137 (438)
T ss_pred EECCCCCCCCHHH-HHHHHCCCcEE-EHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCCCE
Confidence 7665443344443 44456788887 4555543322 2 334557777787653
No 467
>PRK05650 short chain dehydrogenase; Provisional
Probab=87.31 E-value=2.5 Score=37.50 Aligned_cols=33 Identities=3% Similarity=0.029 Sum_probs=27.8
Q ss_pred cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
++|||+| +|.+|..+++.+.+.|++|++++.+.
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~ 34 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWRLALADVNE 34 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999 56789999999999999999886543
No 468
>PRK11579 putative oxidoreductase; Provisional
Probab=87.23 E-value=2.9 Score=38.92 Aligned_cols=143 Identities=10% Similarity=-0.003 Sum_probs=75.2
Q ss_pred ccEEEEEcCCHhHHH-HHHHHHHc-CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372 71 QEKILVANRGEIAVR-VIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (313)
Q Consensus 71 ~~~ILIig~g~~a~~-v~~al~~~-G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi 148 (313)
+.||.|+|.|.++.. .+.++++. +++++.+. +.+... ...... ...-|.+.+.++ ...++|+|+
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~-d~~~~~----~~~~~~------~~~~~~~~~ell---~~~~vD~V~ 69 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVS-SSDATK----VKADWP------TVTVVSEPQHLF---NDPNIDLIV 69 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEE-CCCHHH----HHhhCC------CCceeCCHHHHh---cCCCCCEEE
Confidence 368999999999874 56777664 78888765 333221 111110 001134455544 456799998
Q ss_pred eccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcc-cCCCHHHHHHHHH--HhCCcEE
Q 021372 149 PGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDG-LLQSTEEAVKLAD--ELGFPVM 225 (313)
Q Consensus 149 p~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~-~~~~~~~~~~~~~--~lg~P~V 225 (313)
.... ...+...+..+.+.|.+++.--|-+ ....+=..+.+++++.|+..--.+.. .......+.+.++ .+|-+..
T Consensus 70 I~tp-~~~H~~~~~~al~aGkhVl~EKPla-~t~~ea~~l~~~a~~~g~~l~v~~~~R~~p~~~~~k~~i~~g~iG~i~~ 147 (346)
T PRK11579 70 IPTP-NDTHFPLAKAALEAGKHVVVDKPFT-VTLSQARELDALAKSAGRVLSVFHNRRWDSDFLTLKALLAEGVLGEVAY 147 (346)
T ss_pred EcCC-cHHHHHHHHHHHHCCCeEEEeCCCC-CCHHHHHHHHHHHHHhCCEEEEEeeccCCHHHHHHHHHHhcCCCCCeEE
Confidence 7642 1233455555557788876321111 11122234566777888775332211 1122334555554 3566665
Q ss_pred Eeec
Q 021372 226 IKAT 229 (313)
Q Consensus 226 vKP~ 229 (313)
++..
T Consensus 148 ~~~~ 151 (346)
T PRK11579 148 FESH 151 (346)
T ss_pred EEEE
Confidence 6543
No 469
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=87.19 E-value=2.8 Score=38.35 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=28.5
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.++|||+| .|.+|..+++.|.+.|++|+++..+.
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDL 39 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCC
Confidence 47899999 67799999999999999998665443
No 470
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=87.18 E-value=1.6 Score=37.72 Aligned_cols=76 Identities=9% Similarity=0.003 Sum_probs=46.0
Q ss_pred cccEEEEEcCCH-hHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcC--ceEEccCCCCCCCcCCHHHHHHHHHhcC--C
Q 021372 70 RQEKILVANRGE-IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLAD--ESVCIGEAPSSQSYLLIPNVLSAAISRG--C 144 (313)
Q Consensus 70 ~~~~ILIig~g~-~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad--~~~~v~~~~~~~~~~~~~~l~~~~~~~~--i 144 (313)
...+|||.|++. +|+.+++.+.++|-+|++................ ....+| ..+-...+++.++++++. .
T Consensus 4 tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p~~~t~v~D----v~d~~~~~~lvewLkk~~P~l 79 (245)
T COG3967 4 TGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPEIHTEVCD----VADRDSRRELVEWLKKEYPNL 79 (245)
T ss_pred cCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCcchheeeec----ccchhhHHHHHHHHHhhCCch
Confidence 367899999554 8999999999999999998654332222111111 111111 122344667888777654 4
Q ss_pred CEEee
Q 021372 145 TMLHP 149 (313)
Q Consensus 145 d~vip 149 (313)
++++-
T Consensus 80 NvliN 84 (245)
T COG3967 80 NVLIN 84 (245)
T ss_pred heeee
Confidence 55553
No 471
>PLN02256 arogenate dehydrogenase
Probab=87.15 E-value=3.5 Score=37.86 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=29.9
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
.+++|.|+|.|.+|..+++.+++.|++|++++.+
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~ 68 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRS 68 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECc
Confidence 3578999999999999999999999999888654
No 472
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=87.11 E-value=2.4 Score=40.87 Aligned_cols=88 Identities=10% Similarity=0.064 Sum_probs=55.4
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCc---ch-hhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCE
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK---DA-LHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~---~~-~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~ 146 (313)
.||++|.+++.....++..++++|.+|+++...-.. .. ......+..+.++ ..+...+.+.+++.++|+
T Consensus 300 Gkrv~i~~g~~~~~~~~~~l~elGmevv~~g~~~~~~~~~~~~~~~~~~~~~i~~-------~~d~~e~~~~i~~~~pDl 372 (421)
T cd01976 300 GKTVMLYVGGLRPRHYIGAYEDLGMEVVGTGYEFAHRDDYERTEVIPKEGTLLYD-------DVTHYELEEFVKRLKPDL 372 (421)
T ss_pred CCEEEEECCCCcHHHHHHHHHHCCCEEEEEEeecCCHHHHhhHHhhcCCceEEEc-------CCCHHHHHHHHHHhCCCE
Confidence 578988887766778888999999999987542111 11 1111123333232 135678888888999999
Q ss_pred EeeccCcCcccHHHHHHHHHcCCcee
Q 021372 147 LHPGYGFLAENAVFVEMCREHGINFI 172 (313)
Q Consensus 147 vip~~g~~~e~~~~~~~l~~~gi~~~ 172 (313)
++.+. . .....+++|+|+.
T Consensus 373 iig~~----~---~~~~a~k~giP~~ 391 (421)
T cd01976 373 IGSGI----K---EKYVFQKMGIPFR 391 (421)
T ss_pred EEecC----c---chhhhhhcCCCeE
Confidence 99553 1 2233467788873
No 473
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=87.10 E-value=3 Score=38.63 Aligned_cols=94 Identities=14% Similarity=0.106 Sum_probs=53.3
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCc-EEEEecCCCcchhhhhhc-CceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKLA-DESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~-vi~v~~~~~~~~~~~~~a-d~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v 147 (313)
+..+|||.|+|.+|..+++.++.+|.. +++++...........+. +..+ + ... ....+.+.++....++|++
T Consensus 166 ~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v--~--~~~--~~~~~~i~~~~~~~~~d~v 239 (351)
T cd08285 166 LGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIV--D--YKN--GDVVEQILKLTGGKGVDAV 239 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEe--c--CCC--CCHHHHHHHHhCCCCCcEE
Confidence 357899999999999999999999996 666654433332222222 2222 1 111 1224455555555679999
Q ss_pred eeccCcCcccHHHHHHHHHcCC
Q 021372 148 HPGYGFLAENAVFVEMCREHGI 169 (313)
Q Consensus 148 ip~~g~~~e~~~~~~~l~~~gi 169 (313)
+-..+...-.....+.+...|.
T Consensus 240 ld~~g~~~~~~~~~~~l~~~G~ 261 (351)
T cd08285 240 IIAGGGQDTFEQALKVLKPGGT 261 (351)
T ss_pred EECCCCHHHHHHHHHHhhcCCE
Confidence 8654321111233444545553
No 474
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=87.07 E-value=1.4 Score=47.05 Aligned_cols=34 Identities=15% Similarity=0.114 Sum_probs=30.9
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.++|+|+|+|+.|+..+..|++.|++|++++..+
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~ 570 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKE 570 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 5789999999999999999999999999997543
No 475
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=86.97 E-value=1.2 Score=43.15 Aligned_cols=34 Identities=12% Similarity=0.161 Sum_probs=30.9
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
..++|+|+|+|+.|+..+..|++.|++|++++..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~ 165 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEAL 165 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence 3689999999999999999999999999999754
No 476
>PRK07588 hypothetical protein; Provisional
Probab=86.97 E-value=1 Score=42.55 Aligned_cols=33 Identities=9% Similarity=0.021 Sum_probs=29.8
Q ss_pred cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
++|+|+|+|..|+.++.+|.+.|++|+++...+
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAP 33 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCC
Confidence 379999999999999999999999999997553
No 477
>PRK07791 short chain dehydrogenase; Provisional
Probab=86.96 E-value=3 Score=37.61 Aligned_cols=34 Identities=15% Similarity=0.055 Sum_probs=28.4
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
..+++||+| ++.+|..+++.+.+.|.+|++++.+
T Consensus 5 ~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~ 39 (286)
T PRK07791 5 DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIG 39 (286)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCC
Confidence 357899999 5568999999999999999887543
No 478
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=86.96 E-value=3 Score=39.60 Aligned_cols=103 Identities=14% Similarity=0.060 Sum_probs=57.0
Q ss_pred cccEEEEEc--CCHhHHHHHHHHHHcCCcEEEEecC---------CC-cchhhhhhcCceEEccCC---CCCCCc-CCHH
Q 021372 70 RQEKILVAN--RGEIAVRVIRTAHEMGIPCVAVYST---------ID-KDALHVKLADESVCIGEA---PSSQSY-LLIP 133 (313)
Q Consensus 70 ~~~~ILIig--~g~~a~~v~~al~~~G~~vi~v~~~---------~~-~~~~~~~~ad~~~~v~~~---~~~~~~-~~~~ 133 (313)
..+|||+.| .......+++.+.+.|..|+.-+.- .+ ...+...+|+.......+ ...... .-.+
T Consensus 232 ~~~RIl~tG~~~~~~~~k~~~~iE~~G~~VV~dd~c~g~r~~~~~v~e~~dp~~aLA~~Yl~~~~~c~~~~~~~~~~R~~ 311 (380)
T TIGR02263 232 DNCRVIICGMFCEQPPLNLIKSIELSGCYIVDDDFIIVHRFENNDVALAGDPLQNLALAFLHDSISTAAKYDDDEADKGK 311 (380)
T ss_pred CCCEEEEECcCCCCchHHHHHHHHHCCCEEEEecCCccchhhhccCCCCCCHHHHHHHHHhhCCCCCccccCCChhhHHH
Confidence 368999999 3233467889999999988765320 00 111223345544322110 111111 2467
Q ss_pred HHHHHHHhcCCCEEeecc--C---cCcccHHHHHHHHHcCCcee
Q 021372 134 NVLSAAISRGCTMLHPGY--G---FLAENAVFVEMCREHGINFI 172 (313)
Q Consensus 134 ~l~~~~~~~~id~vip~~--g---~~~e~~~~~~~l~~~gi~~~ 172 (313)
.+.+++++.++|+|+-.. + ...+...+.+.+++.|||++
T Consensus 312 ~i~~lvke~~aDGVI~~~~~~C~~~~~e~~~lk~~l~e~GIP~L 355 (380)
T TIGR02263 312 YLLDQVRKNAAEGVIFAAPSFCDPALLERPMLAARCKEHGIPQI 355 (380)
T ss_pred HHHHHHHHhCCCEEEEhHhhcCChhhhhHHHHHHHHHHCCCCEE
Confidence 899999999999998431 0 11122344455566666654
No 479
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=86.95 E-value=2.2 Score=39.10 Aligned_cols=35 Identities=3% Similarity=0.206 Sum_probs=29.1
Q ss_pred cccEEEEEcC-CHhHHHHHHHHHHcC-CcEEEEecCC
Q 021372 70 RQEKILVANR-GEIAVRVIRTAHEMG-IPCVAVYSTI 104 (313)
Q Consensus 70 ~~~~ILIig~-g~~a~~v~~al~~~G-~~vi~v~~~~ 104 (313)
|.+++||+|+ +.+|..+++.+.+.| ++|++++.+.
T Consensus 2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~ 38 (314)
T TIGR01289 2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDF 38 (314)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 5678999994 558999999999999 9998886443
No 480
>PRK12744 short chain dehydrogenase; Provisional
Probab=86.88 E-value=3.9 Score=35.93 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=27.2
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS 102 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~ 102 (313)
.+++||+| ++.+|..+++.+.+.|++|+++..
T Consensus 8 ~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~ 40 (257)
T PRK12744 8 GKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHY 40 (257)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCcEEEEec
Confidence 47899999 666899999999999999777753
No 481
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=86.88 E-value=5.5 Score=37.70 Aligned_cols=124 Identities=8% Similarity=0.027 Sum_probs=64.9
Q ss_pred cccccEEEEEcCCHhHHHHHHHHHHcCCc-EEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCE
Q 021372 68 TCRQEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (313)
Q Consensus 68 ~~~~~~ILIig~g~~a~~v~~al~~~G~~-vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~ 146 (313)
+...++|+|+|.|.+|..+++.|.+.|+. ++++|.+.-.. +.+....++.. .+-...-.+.+.+.+++...+.
T Consensus 132 ~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~---sNl~Rq~l~~~---~diG~~Ka~~~~~~l~~~np~v 205 (376)
T PRK08762 132 RLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDR---SNLQRQILHTE---DRVGQPKVDSAAQRLAALNPDV 205 (376)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecc---hhhccccccch---hhCCCcHHHHHHHHHHHHCCCC
Confidence 33467899999999999999999999995 66665442111 22222332211 0001123555666666555543
Q ss_pred EeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCC
Q 021372 147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPG 202 (313)
Q Consensus 147 vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~ 202 (313)
-+..+....+.....+.+....+-+-..+.- ..+....+.+.++++|..-.
T Consensus 206 ~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~-----~~r~~ln~~~~~~~ip~i~~ 256 (376)
T PRK08762 206 QVEAVQERVTSDNVEALLQDVDVVVDGADNF-----PTRYLLNDACVKLGKPLVYG 256 (376)
T ss_pred EEEEEeccCChHHHHHHHhCCCEEEECCCCH-----HHHHHHHHHHHHcCCCEEEE
Confidence 3322211111122334444444433322211 12455667788888886543
No 482
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=86.87 E-value=3.1 Score=37.52 Aligned_cols=72 Identities=14% Similarity=-0.077 Sum_probs=44.4
Q ss_pred EEEEEc-CCHhHHHHHHHHHHcC--CcEEEEecCCC--cchhhhhhcC----ceEEccCCCCCCCcCCHHHHHHHHHhcC
Q 021372 73 KILVAN-RGEIAVRVIRTAHEMG--IPCVAVYSTID--KDALHVKLAD----ESVCIGEAPSSQSYLLIPNVLSAAISRG 143 (313)
Q Consensus 73 ~ILIig-~g~~a~~v~~al~~~G--~~vi~v~~~~~--~~~~~~~~ad----~~~~v~~~~~~~~~~~~~~l~~~~~~~~ 143 (313)
+|||+| .|.+|..+++.|.+.| ++|++++.... .......+.. ..+.. +..+.+.+.++++..+
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------Dl~~~~~~~~~~~~~~ 73 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKG-------DIGDRELVSRLFTEHQ 73 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEc-------CCcCHHHHHHHHhhcC
Confidence 589999 5789999999998887 78887753211 0000011111 11211 2456677888887778
Q ss_pred CCEEeecc
Q 021372 144 CTMLHPGY 151 (313)
Q Consensus 144 id~vip~~ 151 (313)
+|.|+-..
T Consensus 74 ~d~vi~~a 81 (317)
T TIGR01181 74 PDAVVHFA 81 (317)
T ss_pred CCEEEEcc
Confidence 99988654
No 483
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=86.85 E-value=1 Score=43.42 Aligned_cols=34 Identities=9% Similarity=-0.003 Sum_probs=29.4
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHc--CCcEEEEecCC
Q 021372 71 QEKILVANRGEIAVRVIRTAHEM--GIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~--G~~vi~v~~~~ 104 (313)
|+||+|+|+|..|...++.++++ +++|++++.+.
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~ 36 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDR 36 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence 45899999999999999999887 78899997654
No 484
>PRK07578 short chain dehydrogenase; Provisional
Probab=86.84 E-value=3.9 Score=34.43 Aligned_cols=60 Identities=13% Similarity=0.063 Sum_probs=39.3
Q ss_pred EEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhc-CCCEEeec
Q 021372 73 KILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISR-GCTMLHPG 150 (313)
Q Consensus 73 ~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~-~id~vip~ 150 (313)
++||+| ++.+|..+++.+.+. ++|++++.+.. .+.+| ..+.+.+.++..+. ++|.++-.
T Consensus 2 ~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~-----------~~~~D-------~~~~~~~~~~~~~~~~id~lv~~ 62 (199)
T PRK07578 2 KILVIGASGTIGRAVVAELSKR-HEVITAGRSSG-----------DVQVD-------ITDPASIRALFEKVGKVDAVVSA 62 (199)
T ss_pred eEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC-----------ceEec-------CCChHHHHHHHHhcCCCCEEEEC
Confidence 689999 566899999999988 88888754322 12222 23344555555443 68988854
Q ss_pred c
Q 021372 151 Y 151 (313)
Q Consensus 151 ~ 151 (313)
-
T Consensus 63 a 63 (199)
T PRK07578 63 A 63 (199)
T ss_pred C
Confidence 4
No 485
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=86.82 E-value=1.6 Score=38.52 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=29.1
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
+++|||+| +|.+|..+++.|.+.|++|+++..+.
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~ 51 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDV 51 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCH
Confidence 57899999 58899999999999999998875443
No 486
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=86.79 E-value=3.6 Score=36.26 Aligned_cols=32 Identities=6% Similarity=0.062 Sum_probs=27.6
Q ss_pred ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS 102 (313)
Q Consensus 71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~ 102 (313)
.+++||+| ++.+|..+++.+.+.|+.++++..
T Consensus 7 ~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~ 39 (261)
T PRK08936 7 GKVVVITGGSTGLGRAMAVRFGKEKAKVVINYR 39 (261)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 57899999 566899999999999999887654
No 487
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=86.73 E-value=1.6 Score=39.70 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=30.4
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.++++|+|.|.+|..+++.|+.+|.+|++++.+.
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5799999999999999999999999998886543
No 488
>PRK06184 hypothetical protein; Provisional
Probab=86.72 E-value=1.1 Score=44.09 Aligned_cols=34 Identities=9% Similarity=0.177 Sum_probs=30.7
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
...|+|+|+|+.|+.++..|.+.|++|++++..+
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~ 36 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAP 36 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 4579999999999999999999999999997654
No 489
>PRK06270 homoserine dehydrogenase; Provisional
Probab=86.72 E-value=9.5 Score=35.61 Aligned_cols=125 Identities=16% Similarity=0.128 Sum_probs=62.8
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHc----------CCcEEEEecC-CC-------cchhhhhhcCceEEccCCCCCCCcCC
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEM----------GIPCVAVYST-ID-------KDALHVKLADESVCIGEAPSSQSYLL 131 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~----------G~~vi~v~~~-~~-------~~~~~~~~ad~~~~v~~~~~~~~~~~ 131 (313)
|..+|.|+|.|.+|..+++.+.+. +++++.+.+. .. .......+....-.+...+......+
T Consensus 1 m~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (341)
T PRK06270 1 MEMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEIS 80 (341)
T ss_pred CeEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCC
Confidence 457899999999999999888765 4566655421 10 00000111111000000000000123
Q ss_pred HHHHHHHHHhcCCCEEeeccCcC---ccc-HHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCC
Q 021372 132 IPNVLSAAISRGCTMLHPGYGFL---AEN-AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPT 199 (313)
Q Consensus 132 ~~~l~~~~~~~~id~vip~~g~~---~e~-~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~ 199 (313)
.+ +++.+..+|+|+-..+.. .+. ......+.+.|++++..+-..+.... ..+.++++++|+..
T Consensus 81 ~~---ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~--~eL~~~A~~~g~~~ 147 (341)
T PRK06270 81 GL---EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAY--KELKELAKKNGVRF 147 (341)
T ss_pred HH---HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhH--HHHHHHHHHcCCEE
Confidence 33 445556799998653211 111 23434445789999855433333222 35677777877643
No 490
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=86.69 E-value=1.1 Score=40.07 Aligned_cols=33 Identities=9% Similarity=0.134 Sum_probs=29.7
Q ss_pred EEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (313)
Q Consensus 73 ~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~ 105 (313)
.|+|+|+|+.|+.++..|++.|++|.+++....
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 489999999999999999999999999976543
No 491
>PRK06720 hypothetical protein; Provisional
Probab=86.63 E-value=3.9 Score=34.01 Aligned_cols=34 Identities=12% Similarity=0.096 Sum_probs=28.6
Q ss_pred cccEEEEEcCC-HhHHHHHHHHHHcCCcEEEEecC
Q 021372 70 RQEKILVANRG-EIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 70 ~~~~ILIig~g-~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
..+.++|+|++ .+|..+++.+.+.|++|++++.+
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~ 49 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDID 49 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECC
Confidence 35789999954 58999999999999999988744
No 492
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=86.60 E-value=2.4 Score=39.21 Aligned_cols=91 Identities=11% Similarity=0.197 Sum_probs=51.5
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCc-EEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~-vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip 149 (313)
..+|||.|+|.+|+..++.++.+|.+ |++++.++........+-...+ ++. ..+ +.+.+.+. ..++|.++-
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~v-i~~--~~~---~~~~~~~~--~g~~D~vid 241 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKL-VNP--QND---DLDHYKAE--KGYFDVSFE 241 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEE-ecC--Ccc---cHHHHhcc--CCCCCEEEE
Confidence 57899999999999999999999995 7777655544443333332222 221 111 12222221 124899986
Q ss_pred ccCcCcccHHHHHHHHHcCC
Q 021372 150 GYGFLAENAVFVEMCREHGI 169 (313)
Q Consensus 150 ~~g~~~e~~~~~~~l~~~gi 169 (313)
..|...-.....+.+...|.
T Consensus 242 ~~G~~~~~~~~~~~l~~~G~ 261 (343)
T PRK09880 242 VSGHPSSINTCLEVTRAKGV 261 (343)
T ss_pred CCCCHHHHHHHHHHhhcCCE
Confidence 55421111234455555553
No 493
>PRK07208 hypothetical protein; Provisional
Probab=86.59 E-value=1.1 Score=43.75 Aligned_cols=35 Identities=9% Similarity=0.216 Sum_probs=31.1
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
++++|+|+|+|..|+..+..|++.|++|+++....
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~ 37 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADP 37 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 36789999999999999999999999999997543
No 494
>PRK07832 short chain dehydrogenase; Provisional
Probab=86.59 E-value=3.1 Score=37.02 Aligned_cols=33 Identities=9% Similarity=0.031 Sum_probs=27.5
Q ss_pred cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~ 34 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDA 34 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999 56689999999999999998886543
No 495
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=86.57 E-value=1.4 Score=46.78 Aligned_cols=35 Identities=14% Similarity=0.064 Sum_probs=31.5
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
..++|+|+|+|+.|+..+..|.+.|++|++++...
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~ 339 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH 339 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Confidence 37899999999999999999999999999997543
No 496
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.50 E-value=7.1 Score=38.39 Aligned_cols=34 Identities=18% Similarity=0.129 Sum_probs=30.1
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~ 104 (313)
.++|+|+|-|.+|+.+++.|+++|++|.+.|...
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 4689999999999999999999999999887544
No 497
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=86.48 E-value=3.8 Score=40.16 Aligned_cols=88 Identities=11% Similarity=0.161 Sum_probs=57.5
Q ss_pred ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhh---h-hcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCE
Q 021372 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV---K-LADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (313)
Q Consensus 71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~---~-~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~ 146 (313)
.+++.|.+.+.....+++.+.++|.+|..+........... . +.+..+.++ ..+...+.+.+++.++|+
T Consensus 324 Gk~vaI~~~~~~~~~la~~l~ElGm~v~~~~~~~~~~~~~~~l~~~~~~~~~v~~-------d~~~~e~~~~i~~~~pDl 396 (475)
T PRK14478 324 GKRVLLYTGGVKSWSVVKALQELGMEVVGTSVKKSTDEDKERIKELMGPDAHMID-------DANPRELYKMLKEAKADI 396 (475)
T ss_pred CCEEEEEcCCchHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHcCCCcEEEe-------CCCHHHHHHHHhhcCCCE
Confidence 57888888777888999999999999988765443221111 1 122223232 134667888888899999
Q ss_pred EeeccCcCcccHHHHHHHHHcCCcee
Q 021372 147 LHPGYGFLAENAVFVEMCREHGINFI 172 (313)
Q Consensus 147 vip~~g~~~e~~~~~~~l~~~gi~~~ 172 (313)
++.+. .......+.|++++
T Consensus 397 iig~s-------~~~~~a~k~giP~~ 415 (475)
T PRK14478 397 MLSGG-------RSQFIALKAGMPWL 415 (475)
T ss_pred EEecC-------chhhhhhhcCCCEE
Confidence 99542 12233456799886
No 498
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=86.48 E-value=2.8 Score=38.80 Aligned_cols=37 Identities=14% Similarity=0.191 Sum_probs=31.2
Q ss_pred cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCc
Q 021372 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDK 106 (313)
Q Consensus 70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~ 106 (313)
+.++|+|+| +|.+|..+++.|-++||.|...-.++..
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~ 42 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPED 42 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcch
Confidence 468999999 6678999999999999999987655543
No 499
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=86.45 E-value=1.1 Score=43.44 Aligned_cols=34 Identities=12% Similarity=0.142 Sum_probs=30.7
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
..++|+|+|+|+.|+..+..|.+.|++|++++..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~ 172 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEAR 172 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Confidence 3678999999999999999999999999999654
No 500
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=86.41 E-value=3.8 Score=39.52 Aligned_cols=34 Identities=21% Similarity=0.154 Sum_probs=30.1
Q ss_pred cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (313)
Q Consensus 70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~ 103 (313)
|...|+|+|+|..|+..+..+.+.|.+|.+++..
T Consensus 1 ~~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~ 34 (422)
T PRK05329 1 MKFDVLVIGGGLAGLTAALAAAEAGKRVALVAKG 34 (422)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEECC
Confidence 4567999999999999999999999999999754
Done!