Query 021373
Match_columns 313
No_of_seqs 266 out of 1512
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 03:12:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021373.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021373hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b12_A Signal peptidase I; ser 100.0 4.8E-37 1.6E-41 282.8 11.6 141 165-312 1-229 (248)
2 1kca_A Repressor protein CI; g 98.8 2.4E-08 8.3E-13 80.5 10.8 51 172-235 15-71 (109)
3 1umu_A UMUD'; induced mutagene 98.8 2.2E-08 7.4E-13 81.1 9.1 51 171-235 28-79 (116)
4 1jhf_A LEXA repressor; LEXA SO 98.7 7.2E-08 2.5E-12 84.6 11.5 56 172-242 112-168 (202)
5 2hnf_A Repressor protein CI101 98.3 1.3E-06 4.5E-11 72.3 7.5 51 172-235 46-102 (133)
6 3bdn_A Lambda repressor; repre 98.3 2.2E-06 7.5E-11 76.2 8.8 53 172-237 142-200 (236)
7 3k2z_A LEXA repressor; winged 98.2 5.1E-06 1.8E-10 72.8 9.7 51 171-235 110-161 (196)
8 2fjr_A Repressor protein CI; g 90.9 0.29 1E-05 41.3 5.3 49 179-242 114-162 (189)
9 1w4s_A Polybromo, polybromo 1 69.3 6.5 0.00022 33.4 5.3 104 180-308 5-108 (174)
10 3v2d_O 50S ribosomal protein L 59.4 57 0.0019 26.5 8.8 24 274-298 82-105 (122)
11 2hnf_A Repressor protein CI101 55.7 67 0.0023 25.3 8.8 32 272-307 101-132 (133)
12 3r8s_K 50S ribosomal protein L 52.3 67 0.0023 26.1 8.1 39 170-208 19-58 (122)
13 3bbo_M Ribosomal protein L14; 51.0 93 0.0032 25.2 8.8 25 274-299 82-106 (121)
14 3k2z_A LEXA repressor; winged 47.1 65 0.0022 27.1 7.8 37 271-310 159-195 (196)
15 1whi_A Ribosomal protein L14; 45.2 1.1E+02 0.0037 24.8 8.3 26 273-299 81-106 (122)
16 2lqh_B Forkhead box O3, FOXO3A 37.6 10 0.00034 25.6 0.0 14 116-129 25-38 (52)
17 3fm8_A Kinesin-like protein KI 27.1 1.2E+02 0.004 24.2 5.8 21 236-256 79-102 (124)
18 2pp6_A Gifsy-2 prophage ATP-bi 24.8 92 0.0031 24.6 4.5 26 201-237 63-88 (102)
19 2pk2_A Cyclin-T1, protein TAT; 23.1 17 0.0006 34.3 0.0 6 48-53 240-245 (358)
20 3u5e_V L17A, YL32, 60S ribosom 21.4 2.7E+02 0.0092 22.9 6.9 28 271-299 95-122 (137)
21 2dgy_A MGC11102 protein; EIF-1 20.4 65 0.0022 25.6 2.8 11 202-212 54-64 (111)
No 1
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Probab=100.00 E-value=4.8e-37 Score=282.83 Aligned_cols=141 Identities=34% Similarity=0.404 Sum_probs=119.3
Q ss_pred HHHceeEeEEECCCCcccCCCCCCEEEEEeeeccC------------CCCCCCcEEEEeCCccccccccCCCccEEEEEE
Q 021373 165 FRSFVAEPRYIPSLSMYPTFDVGDRIVAEKVTYYF------------RKPCSNDIVIFKSPPVLQEVGYTDDDVFIKRVV 232 (313)
Q Consensus 165 l~~fv~~~~~V~g~SMePTL~~GD~VlV~K~~~~~------------~~p~rGDIVVF~~P~~~~~~~~~~~~~lVKRVi 232 (313)
++.|+++.+.|+|+||+|||++||+|+|+|..|++ ..+++||||||+.|.+ ++..+||||+
T Consensus 1 ir~fv~~~~~v~g~SM~Ptl~~GD~vlv~k~~yg~r~P~~~~~l~~~~~~~rGDIvvf~~p~~-------~~~~~iKRVi 73 (248)
T 1b12_A 1 VRSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPED-------PKLDYIKRAV 73 (248)
T ss_dssp -CBCCEEEEECCSCTTTTTSCTTEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTC-------TTSEEEEEEE
T ss_pred CeEEEEEEEEeccccccccccCCCEEEEEecccCcccccccccccccCCCCCCcEEEEEeCCC-------CCceEEEEEE
Confidence 46789999999999999999999999999988753 5799999999998864 5678999999
Q ss_pred eeCCCEEEEeCC--EEEECC-----------EEccccccc----------------------------------------
Q 021373 233 AKEGDVVEVREG--KLIVNG-----------VVRNEDYIL---------------------------------------- 259 (313)
Q Consensus 233 GlPGD~V~I~~g--~lyING-----------k~l~e~y~~---------------------------------------- 259 (313)
|+|||+|+++++ .||||| +.+.+.+..
T Consensus 74 glpGD~v~i~~~~~~l~ING~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~e 153 (248)
T 1b12_A 74 GLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKE 153 (248)
T ss_dssp ECTTCEEEEETTTTEEEEETTCCSSCCCCCCCCEEECCCEEEEEEEEEECGGGSCEEEEEEECCTTCCCTTEEEEEEEEE
T ss_pred eeCCCEEEEEcCceEEEECCccccccccccceeeeeeccccccccccccccccccccccccccccccccccchhhhhHHh
Confidence 999999999999 999999 655432110
Q ss_pred c----------CCC-------------CCCCCEEecCCcEEEecCCCCCCCCCCCCCccCCCCeEEEEEEEeecCC
Q 021373 260 E----------APS-------------YNMTPITVPENSVFVMGDNRNNSYDSHGAPPCQEYHRKISISLLASAKD 312 (313)
Q Consensus 260 ~----------~~~-------------~~~~~~~VP~g~yfVLGDNr~~S~DSRyfG~Vp~~~I~GkV~~~~~~~~ 312 (313)
. .+. ....+++||+|+||||||||++|.||||||+||+++|+|||.+++||.+
T Consensus 154 ~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~VP~g~yFvmGDNR~nS~DSR~~G~Vp~~~IvGka~~i~~s~~ 229 (248)
T 1b12_A 154 TLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFD 229 (248)
T ss_dssp EETTEEEEEEECTTCCCCGGGSCCCTTCCTTEEECCTTEEEEECSBTTSCCCHHHHCCEEGGGEEEEEEEEEEEBC
T ss_pred hhcCccceeEecCCccccccchhcccccccccEEeCCCcEEEecCCCcccCCCCcccccCHHHeEEEEEEEEEeCC
Confidence 0 011 0223679999999999999999999999999999999999999998864
No 2
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=98.83 E-value=2.4e-08 Score=80.48 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=43.1
Q ss_pred eEEECCCCcc------cCCCCCCEEEEEeeeccCCCCCCCcEEEEeCCccccccccCCCccEEEEEEeeC
Q 021373 172 PRYIPSLSMY------PTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVGYTDDDVFIKRVVAKE 235 (313)
Q Consensus 172 ~~~V~g~SMe------PTL~~GD~VlV~K~~~~~~~p~rGDIVVF~~P~~~~~~~~~~~~~lVKRViGlP 235 (313)
.++|.|+||+ |+|.+||+|+|++. ..++.||+|++..+ ++..+|||++..+
T Consensus 15 ~~~V~GdSM~~~~g~~p~i~~Gd~v~Vd~~----~~~~~Gdivv~~~~---------~~~~~vKrl~~~~ 71 (109)
T 1kca_A 15 WLEVEGNSMTAPTGSKPSFPDGMLILVDPE----QAVEPGDFCIARLG---------GDEFTFKKLIRDS 71 (109)
T ss_dssp EEECCSSTTCCCTTCSSCCCTTCEEEEETT----SCCCTTCEEEEECS---------TTCEEEEEEEEET
T ss_pred EEEEeCcCcCCCCCCCCeeCCCCEEEEecC----CcCCCCCEEEEEEC---------CCeEEEEEEEEeC
Confidence 4789999999 99999999999975 36899999999863 2478999998653
No 3
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A
Probab=98.78 E-value=2.2e-08 Score=81.09 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=43.8
Q ss_pred EeEEECCCCccc-CCCCCCEEEEEeeeccCCCCCCCcEEEEeCCccccccccCCCccEEEEEEeeC
Q 021373 171 EPRYIPSLSMYP-TFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVGYTDDDVFIKRVVAKE 235 (313)
Q Consensus 171 ~~~~V~g~SMeP-TL~~GD~VlV~K~~~~~~~p~rGDIVVF~~P~~~~~~~~~~~~~lVKRViGlP 235 (313)
..++|.|+||+| +|++||.|+|++.. .++.||+|++.. ++..+|||++..+
T Consensus 28 ~~~~v~GdSM~p~~i~~Gd~v~vd~~~----~~~~gdivv~~~----------~~~~~vKr~~~~~ 79 (116)
T 1umu_A 28 YFVKASGDSMIDGGISDGDLLIVDSAI----TASHGDIVIAAV----------DGEFTVKKLQLRP 79 (116)
T ss_dssp EEEECCSSTTGGGTCCTTCEEEEETTS----CCCTTCEEEEEE----------TTEEEEEEEECSS
T ss_pred EEEEECCCCcCCCCCCCCCEEEEEcCC----CCCCCCEEEEEE----------CCEEEEEEEEeCC
Confidence 357899999999 89999999999753 689999999986 4578999998754
No 4
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=98.73 E-value=7.2e-08 Score=84.57 Aligned_cols=56 Identities=27% Similarity=0.392 Sum_probs=47.0
Q ss_pred eEEECCCCcccC-CCCCCEEEEEeeeccCCCCCCCcEEEEeCCccccccccCCCccEEEEEEeeCCCEEEEe
Q 021373 172 PRYIPSLSMYPT-FDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVGYTDDDVFIKRVVAKEGDVVEVR 242 (313)
Q Consensus 172 ~~~V~g~SMePT-L~~GD~VlV~K~~~~~~~p~rGDIVVF~~P~~~~~~~~~~~~~lVKRViGlPGD~V~I~ 242 (313)
.++|.|+||+|+ |.+||.|+|++. ..++.||+|++.. ++..+|||+. .+|+.+.+.
T Consensus 112 ~~~v~GdSM~p~~i~~Gd~v~vd~~----~~~~~G~i~v~~~----------~~~~~vKrl~-~~~~~~~l~ 168 (202)
T 1jhf_A 112 LLRVSGMSMKDIGIMDGDLLAVHKT----QDVRNGQVVVARI----------DDEVTVKRLK-KQGNKVELL 168 (202)
T ss_dssp EEECCSSTTGGGTCCTTCEEEEEEC----SCCCTTSEEEEEE----------TTEEEEEEEE-EETTEEEEE
T ss_pred EEEECCCCCCCCCCCCCCEEEEecc----CCcCCCeEEEEEE----------CCEEEEEEEE-EeCCEEEEE
Confidence 578999999999 999999999875 3688999999986 5679999998 567666543
No 5
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=98.30 E-value=1.3e-06 Score=72.29 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=43.0
Q ss_pred eEEECCCCcc------cCCCCCCEEEEEeeeccCCCCCCCcEEEEeCCccccccccCCCccEEEEEEeeC
Q 021373 172 PRYIPSLSMY------PTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVGYTDDDVFIKRVVAKE 235 (313)
Q Consensus 172 ~~~V~g~SMe------PTL~~GD~VlV~K~~~~~~~p~rGDIVVF~~P~~~~~~~~~~~~~lVKRViGlP 235 (313)
.++|.|+||+ |+|.+||+|+|++. ..++.||+|++... ++..+|||++-..
T Consensus 46 ~~~V~GdSM~~~~g~~p~i~~Gd~v~vd~~----~~~~~Gdivv~~~~---------~~~~~vKrl~~~~ 102 (133)
T 2hnf_A 46 WLEVEGNSMTTPTGSKTSFPDGMLILVDPE----QAVEPGDFCIARLG---------GDEFTFAKLIRDS 102 (133)
T ss_dssp EEECCSSTTCCC---CCCCCTTCEEEEETT----SCCCTTSEEEEEET---------TTEEEEEEEEEET
T ss_pred EEEEeCCCcCCCcCCCCccCCCCEEEEccC----CCCCCCCEEEEEEC---------CCEEEEEEEEEeC
Confidence 4789999999 99999999999975 37899999999862 3478999998643
No 6
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=98.27 E-value=2.2e-06 Score=76.20 Aligned_cols=53 Identities=21% Similarity=0.253 Sum_probs=44.0
Q ss_pred eEEECCCCcc------cCCCCCCEEEEEeeeccCCCCCCCcEEEEeCCccccccccCCCccEEEEEEeeCCC
Q 021373 172 PRYIPSLSMY------PTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVGYTDDDVFIKRVVAKEGD 237 (313)
Q Consensus 172 ~~~V~g~SMe------PTL~~GD~VlV~K~~~~~~~p~rGDIVVF~~P~~~~~~~~~~~~~lVKRViGlPGD 237 (313)
.++|.|+||+ |+|.+||+|+|++.. .++.||+|++... ++..+|||+...+|.
T Consensus 142 ~l~V~GdSM~~~~g~~P~i~~Gd~v~vd~~~----~~~~g~ivv~~~~---------~~~~~vKrl~~~~~~ 200 (236)
T 3bdn_A 142 WLEVEGNSMTAPTGSKPSFPDGMLILVDPEQ----AVEPGDFCIARLG---------GDEFTFKKLIRGSGQ 200 (236)
T ss_dssp EEECCSSSSCCCSSCSSCCCSSCEEEECCSS----CCCTTSEEEEEST---------TTCCCCEEEECCSSS
T ss_pred EEEEeCCCcCCCCCCCCcCCCCCEEEECCCC----CCCCCcEEEEEEC---------CCeEEEEEEEEcCCc
Confidence 4789999999 999999999998753 6889999999862 357899999865444
No 7
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=98.22 E-value=5.1e-06 Score=72.80 Aligned_cols=51 Identities=18% Similarity=0.131 Sum_probs=43.1
Q ss_pred EeEEECCCCc-ccCCCCCCEEEEEeeeccCCCCCCCcEEEEeCCccccccccCCCccEEEEEEeeC
Q 021373 171 EPRYIPSLSM-YPTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVGYTDDDVFIKRVVAKE 235 (313)
Q Consensus 171 ~~~~V~g~SM-ePTL~~GD~VlV~K~~~~~~~p~rGDIVVF~~P~~~~~~~~~~~~~lVKRViGlP 235 (313)
..++|.|+|| +|++.+||+|+|++. ..++.||+|++.. ++..+|||+.-.+
T Consensus 110 f~l~v~GdSM~~p~i~~GD~viv~~~----~~~~~G~ivv~~~----------~~~~~vKr~~~~~ 161 (196)
T 3k2z_A 110 FLLKVKGESMIEEHICDGDLVLVRRQ----DWAQNGDIVAAMV----------DGEVTLAKFYQRG 161 (196)
T ss_dssp EEEECCSSTTGGGTCCTTCEEEEEEC----SCCCTTCEEEEEE----------TTEEEEEEEEEET
T ss_pred EEEEEeCCCcCCCCCCCCCEEEEecc----CcCCCCCEEEEEE----------CCcEEEEEEEEEC
Confidence 3578999999 699999999999975 3678999999986 5689999996543
No 8
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=90.89 E-value=0.29 Score=41.31 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=36.4
Q ss_pred CcccCCCCCCEEEEEeeeccCCCCCCCcEEEEeCCccccccccCCCccEEEEEEeeCCCEEEEe
Q 021373 179 SMYPTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVGYTDDDVFIKRVVAKEGDVVEVR 242 (313)
Q Consensus 179 SMePTL~~GD~VlV~K~~~~~~~p~rGDIVVF~~P~~~~~~~~~~~~~lVKRViGlPGD~V~I~ 242 (313)
+|...-.+||.|+|++. .+..|+++++.. ++..+|||+.-.+|+.+.+.
T Consensus 114 ~~~~v~~~Gd~v~Vd~~-----~~~~g~i~vv~~----------~g~~~vKrl~~~~~~~i~L~ 162 (189)
T 2fjr_A 114 DGMAIRSEGKIYFVDKQ-----ASLSDGLWLVDI----------KGAISIRELTKLPGRKLHVA 162 (189)
T ss_dssp SEEEEEETTEEEEEETT-----CCSCSEEEEEEE----------TTEEEEEEEEEETTTEEEEE
T ss_pred CeEEEeeCCcEEEEEcC-----CccCCCEEEEEe----------CCeEEEEEEEECCCCEEEEE
Confidence 33333389999999864 256799999986 56899999988777766553
No 9
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=69.31 E-value=6.5 Score=33.36 Aligned_cols=104 Identities=10% Similarity=-0.066 Sum_probs=47.8
Q ss_pred cccCCCCCCEEEEEeeeccCCCCCCCcEEEEeCCccccccccCCCccEEEEEEeeCCCEEEEeCCEEEECCEEccccccc
Q 021373 180 MYPTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVGYTDDDVFIKRVVAKEGDVVEVREGKLIVNGVVRNEDYIL 259 (313)
Q Consensus 180 MePTL~~GD~VlV~K~~~~~~~p~rGDIVVF~~P~~~~~~~~~~~~~lVKRViGlPGD~V~I~~g~lyINGk~l~e~y~~ 259 (313)
.+|....+++.......+.-..++.||.|.+..+.. ....+|-||..+--+ .+|..++.++-.-.+-..
T Consensus 5 g~~~~~~~~r~~y~~~~~~g~~~~vGD~V~v~~~~~-------~~~p~I~rI~~i~~~----~~g~~~v~v~WfyRPeet 73 (174)
T 1w4s_A 5 GSAGLSSLHRTYSQDCSFKNSMYHVGDYVYVEPAEA-------NLQPHIVCIERLWED----SAGEKWLYGCWFYRPNET 73 (174)
T ss_dssp ---------------------CCCTTCEEEECCSST-------TSCCEEEEEEEEEEC----TTCCEEEEEEEEECGGGS
T ss_pred CCccccCCCcEEeEEEEECCEEEECCCEEEEeCCCC-------CCCCEEEEEEEEEEc----CCCCEEEEEEEecCHHHc
Confidence 346666666665555545556788999999987542 346788888876322 244555555432111000
Q ss_pred cCCCCCCCCEEecCCcEEEecCCCCCCCCCCCCCccCCCCeEEEEEEEe
Q 021373 260 EAPSYNMTPITVPENSVFVMGDNRNNSYDSHGAPPCQEYHRKISISLLA 308 (313)
Q Consensus 260 ~~~~~~~~~~~VP~g~yfVLGDNr~~S~DSRyfG~Vp~~~I~GkV~~~~ 308 (313)
... .....-++|+|.- .++-.++.+.|.|+.....
T Consensus 74 --~~~--~~~~~~~~EvF~S----------~~~d~~~~~~I~gkC~V~~ 108 (174)
T 1w4s_A 74 --FHL--ATRKFLEKEVFKS----------DYYNKVPVSKILGKCVVMF 108 (174)
T ss_dssp --CCC--TTCEEETTEEEEE----------EEEEEEEGGGEEEEEEEEE
T ss_pred --ccc--cCCcCCCCeeEEe----------CCcceecHHHeeeeEEEEE
Confidence 000 0011237788863 3455788899999976543
No 10
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=59.36 E-value=57 Score=26.50 Aligned_cols=24 Identities=8% Similarity=0.160 Sum_probs=15.5
Q ss_pred CcEEEecCCCCCCCCCCCCCccCCC
Q 021373 274 NSVFVMGDNRNNSYDSHGAPPCQEY 298 (313)
Q Consensus 274 g~yfVLGDNr~~S~DSRyfG~Vp~~ 298 (313)
|-.-++.++- +-.-+|-||||++|
T Consensus 82 Na~Vlin~~~-~p~GTrI~GpVarE 105 (122)
T 3v2d_O 82 NAAVIINNQL-EPRGTRVFGPVARE 105 (122)
T ss_dssp CEEEEECTTS-CBSSSCBCSCBCTH
T ss_pred cEEEEECCCC-CEeeeEEEccchHH
Confidence 3334444443 56778999999876
No 11
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=55.72 E-value=67 Score=25.32 Aligned_cols=32 Identities=13% Similarity=0.022 Sum_probs=20.1
Q ss_pred cCCcEEEecCCCCCCCCCCCCCccCCCCeEEEEEEE
Q 021373 272 PENSVFVMGDNRNNSYDSHGAPPCQEYHRKISISLL 307 (313)
Q Consensus 272 P~g~yfVLGDNr~~S~DSRyfG~Vp~~~I~GkV~~~ 307 (313)
..|.+++..||.. +.....- ..-.|+|+|+..
T Consensus 101 ~~~~~~L~s~N~~--y~~~~~~--~~~~IiG~Vv~~ 132 (133)
T 2hnf_A 101 DSGQVFLQPLNPQ--YPMIPCN--ESCSVVGKVIAS 132 (133)
T ss_dssp ETTEEEEECSSTT--SCCEECS--TTEEEEEEEEEE
T ss_pred eCCeEEEEECCCC--CCCEEcC--CCCEEEEEEEEE
Confidence 3578899999973 2222211 345799999854
No 12
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=52.26 E-value=67 Score=26.06 Aligned_cols=39 Identities=18% Similarity=-0.061 Sum_probs=21.4
Q ss_pred eEeEEECCCCcccCCCCCCEEEEEee-eccCCCCCCCcEE
Q 021373 170 AEPRYIPSLSMYPTFDVGDRIVAEKV-TYYFRKPCSNDIV 208 (313)
Q Consensus 170 ~~~~~V~g~SMePTL~~GD~VlV~K~-~~~~~~p~rGDIV 208 (313)
+..+.|.|.+-...-..||.|++.-. ......+++||++
T Consensus 19 v~cI~Vlgg~~r~~a~iGD~IvvsVK~~~p~~~vkkg~v~ 58 (122)
T 3r8s_K 19 VMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVL 58 (122)
T ss_dssp EEEEEECSSSSCCCBCTTCEEEEEEEEECTTSSSCTTCEE
T ss_pred EEEEEEeCCCCCCcccCCCEEEEEEEEcCCCCccccCCEE
Confidence 34456667666666667887766422 1111234566653
No 13
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=51.02 E-value=93 Score=25.18 Aligned_cols=25 Identities=8% Similarity=0.033 Sum_probs=16.5
Q ss_pred CcEEEecCCCCCCCCCCCCCccCCCC
Q 021373 274 NSVFVMGDNRNNSYDSHGAPPCQEYH 299 (313)
Q Consensus 274 g~yfVLGDNr~~S~DSRyfG~Vp~~~ 299 (313)
|-.-++.++- +-.-+|-||||++|.
T Consensus 82 Na~Vlin~~g-~p~GTrI~GPVarEl 106 (121)
T 3bbo_M 82 NAAVIIDQEG-NPKGTRIFGAIAREL 106 (121)
T ss_dssp CEEEECCTTS-SCSSSCCCSCCCGGG
T ss_pred ceEEEECCCC-CEeEeEEEcCcCHHH
Confidence 3444444443 567789999999874
No 14
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=47.15 E-value=65 Score=27.09 Aligned_cols=37 Identities=11% Similarity=-0.096 Sum_probs=22.2
Q ss_pred ecCCcEEEecCCCCCCCCCCCCCccCCCCeEEEEEEEeec
Q 021373 271 VPENSVFVMGDNRNNSYDSHGAPPCQEYHRKISISLLASA 310 (313)
Q Consensus 271 VP~g~yfVLGDNr~~S~DSRyfG~Vp~~~I~GkV~~~~~~ 310 (313)
...|.+++..||... .....- -..-.|+|+|+..++.
T Consensus 159 ~~~~~~~L~~~N~~y--~~i~i~-~~~~~i~G~Vv~~~r~ 195 (196)
T 3k2z_A 159 QRGDTVELRPANREM--SSMFFR-AEKVKILGKVVGVFRK 195 (196)
T ss_dssp EETTEEEEECSCTTS--CCEEEE-GGGCEEEEEEEEEEEE
T ss_pred EECCEEEEEECCCCC--CCEEec-CCCEEEEEEEEEEEEc
Confidence 346788999888732 111110 1223799999987753
No 15
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M
Probab=45.19 E-value=1.1e+02 Score=24.81 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=16.8
Q ss_pred CCcEEEecCCCCCCCCCCCCCccCCCC
Q 021373 273 ENSVFVMGDNRNNSYDSHGAPPCQEYH 299 (313)
Q Consensus 273 ~g~yfVLGDNr~~S~DSRyfG~Vp~~~ 299 (313)
+|-.-++.++. +-.-+|-||||++|.
T Consensus 81 dNa~Vlin~~g-~p~GTrI~GPVarEl 106 (122)
T 1whi_A 81 ENACVIIRDDK-SPRGTRIFGPVAREL 106 (122)
T ss_dssp SCEEEEECTTS-CBSSSCBCSCBCTHH
T ss_pred CceEEEECCCC-CEeeeEEEccchHHH
Confidence 34444445443 567789999998763
No 16
>2lqh_B Forkhead box O3, FOXO3A; promiscuous binding, intrinsic disorder, transcription; NMR {Homo sapiens} PDB: 2lqi_B
Probab=37.60 E-value=10 Score=25.63 Aligned_cols=14 Identities=57% Similarity=1.189 Sum_probs=7.1
Q ss_pred CCCCCCCCCCCCCC
Q 021373 116 GGGGGGDGGGGDGS 129 (313)
Q Consensus 116 ~~~~~~sag~g~~~ 129 (313)
||+.+|+.|||+..
T Consensus 25 gggsgggsgggsle 38 (52)
T 2lqh_B 25 GGGSGGGSGGGSLE 38 (52)
Confidence 44444555555544
No 17
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=27.09 E-value=1.2e+02 Score=24.24 Aligned_cols=21 Identities=19% Similarity=0.212 Sum_probs=14.2
Q ss_pred CCEEEEe---CCEEEECCEEcccc
Q 021373 236 GDVVEVR---EGKLIVNGVVRNED 256 (313)
Q Consensus 236 GD~V~I~---~g~lyINGk~l~e~ 256 (313)
++.+.+. .+..||||+.+.++
T Consensus 79 ~g~~~l~dl~~ngt~VNG~~V~~~ 102 (124)
T 3fm8_A 79 EGQVMLTPQKNTRTFVNGSSVSSP 102 (124)
T ss_dssp TSCEEEEECTTCCEEETTEECCSC
T ss_pred CCeEEEEECCCCCEEECCEEcCCc
Confidence 3334443 46899999999753
No 18
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=24.80 E-value=92 Score=24.57 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=20.8
Q ss_pred CCCCCcEEEEeCCccccccccCCCccEEEEEEeeCCC
Q 021373 201 KPCSNDIVIFKSPPVLQEVGYTDDDVFIKRVVAKEGD 237 (313)
Q Consensus 201 ~p~rGDIVVF~~P~~~~~~~~~~~~~lVKRViGlPGD 237 (313)
.|+|||.|++. +..++|+|-.-.-|-
T Consensus 63 rP~r~D~Vv~~-----------Gk~y~Vtr~~~~ngk 88 (102)
T 2pp6_A 63 IPRRGDRVVLR-----------GSEFTVTRIRRFNGK 88 (102)
T ss_dssp CCCTTCEEEET-----------TEEEEEEEEEEETTE
T ss_pred ccCCCCEEEEc-----------CcEEEEEEEEEECCc
Confidence 68999999998 667889987755544
No 19
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=23.09 E-value=17 Score=34.27 Aligned_cols=6 Identities=17% Similarity=0.362 Sum_probs=2.3
Q ss_pred eeeccC
Q 021373 48 TILNLH 53 (313)
Q Consensus 48 ~~~~~~ 53 (313)
.|++++
T Consensus 240 ~il~~y 245 (358)
T 2pk2_A 240 EFLQIL 245 (358)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 333333
No 20
>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J
Probab=21.39 E-value=2.7e+02 Score=22.92 Aligned_cols=28 Identities=11% Similarity=0.039 Sum_probs=17.9
Q ss_pred ecCCcEEEecCCCCCCCCCCCCCccCCCC
Q 021373 271 VPENSVFVMGDNRNNSYDSHGAPPCQEYH 299 (313)
Q Consensus 271 VP~g~yfVLGDNr~~S~DSRyfG~Vp~~~ 299 (313)
..+|-.-++.++- +-.-+|-||||++|.
T Consensus 95 FddNA~Vlin~~g-~p~GTrI~GPVarEl 122 (137)
T 3u5e_V 95 FEDNAGVIANPKG-EMKGSAITGPVGKEC 122 (137)
T ss_dssp ESSCEEEEBCTTC-CBSSSCBCSCBCHHH
T ss_pred cCCceEEEECCCC-CEeeeEEEcchhHHH
Confidence 3344444555543 567789999998763
No 21
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.38 E-value=65 Score=25.62 Aligned_cols=11 Identities=18% Similarity=0.223 Sum_probs=6.7
Q ss_pred CCCCcEEEEeC
Q 021373 202 PCSNDIVIFKS 212 (313)
Q Consensus 202 p~rGDIVVF~~ 212 (313)
+.+||+|++..
T Consensus 54 I~~GD~VlVe~ 64 (111)
T 2dgy_A 54 IKRGDFLIVDP 64 (111)
T ss_dssp CCSSCEEEEEE
T ss_pred EcCCCEEEEEe
Confidence 45666666654
Done!