Query 021374
Match_columns 313
No_of_seqs 198 out of 2644
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 02:27:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021374.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021374hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 2.5E-31 5.3E-36 215.4 8.6 288 10-304 66-382 (483)
2 KOG2120 SCF ubiquitin ligase, 99.9 3.6E-27 7.7E-32 183.7 12.1 271 15-299 96-392 (419)
3 KOG4341 F-box protein containi 99.9 2.8E-23 6.2E-28 168.9 5.9 243 58-305 139-412 (483)
4 KOG2120 SCF ubiquitin ligase, 99.7 1.6E-16 3.4E-21 124.7 9.1 201 59-271 187-390 (419)
5 cd00116 LRR_RI Leucine-rich re 99.6 1.5E-13 3.3E-18 115.8 22.3 214 82-305 79-318 (319)
6 cd00116 LRR_RI Leucine-rich re 99.6 3.7E-13 8.1E-18 113.5 21.8 236 59-305 25-289 (319)
7 KOG1947 Leucine rich repeat pr 99.5 1.5E-13 3.3E-18 122.5 12.5 217 83-304 187-437 (482)
8 KOG1947 Leucine rich repeat pr 99.5 9.4E-13 2E-17 117.4 12.8 207 82-293 212-452 (482)
9 PLN00113 leucine-rich repeat r 99.4 3.1E-13 6.7E-18 130.3 9.4 205 82-304 91-318 (968)
10 KOG1909 Ran GTPase-activating 99.4 1E-11 2.3E-16 99.9 12.6 243 58-310 31-314 (382)
11 PLN00113 leucine-rich repeat r 99.4 1.6E-12 3.4E-17 125.5 9.5 182 112-304 162-366 (968)
12 KOG3207 Beta-tubulin folding c 99.3 5.7E-13 1.2E-17 110.0 2.1 185 112-303 144-335 (505)
13 KOG1909 Ran GTPase-activating 99.3 7.7E-11 1.7E-15 95.0 11.4 204 82-294 90-325 (382)
14 KOG3207 Beta-tubulin folding c 99.3 1.2E-12 2.6E-17 108.1 1.1 136 138-278 195-336 (505)
15 KOG4194 Membrane glycoprotein 99.2 3.4E-13 7.4E-18 115.3 -3.4 163 138-311 291-456 (873)
16 KOG4194 Membrane glycoprotein 99.2 4.2E-12 9.1E-17 108.8 -0.1 44 48-94 69-112 (873)
17 KOG3665 ZYG-1-like serine/thre 99.1 9E-10 1.9E-14 100.3 11.3 158 140-303 122-284 (699)
18 PLN03210 Resistant to P. syrin 99.0 6.9E-10 1.5E-14 108.2 9.1 39 264-304 865-903 (1153)
19 KOG3665 ZYG-1-like serine/thre 99.0 2E-09 4.4E-14 98.0 10.5 136 166-305 122-261 (699)
20 PLN03210 Resistant to P. syrin 99.0 2.7E-09 5.9E-14 104.1 9.4 86 111-204 631-716 (1153)
21 PF12937 F-box-like: F-box-lik 98.9 5.9E-10 1.3E-14 64.9 2.2 44 20-64 3-46 (47)
22 KOG0444 Cytoskeletal regulator 98.8 1.6E-10 3.6E-15 100.3 -3.8 131 165-306 244-374 (1255)
23 COG5238 RNA1 Ran GTPase-activa 98.8 1.8E-07 3.8E-12 73.6 13.0 212 83-304 29-282 (388)
24 PF14580 LRR_9: Leucine-rich r 98.7 8.4E-09 1.8E-13 77.7 1.9 126 140-275 19-147 (175)
25 KOG4237 Extracellular matrix p 98.7 2E-09 4.3E-14 88.5 -1.6 94 214-311 270-363 (498)
26 KOG0444 Cytoskeletal regulator 98.6 4.7E-09 1E-13 91.5 -2.2 157 137-305 123-279 (1255)
27 KOG2982 Uncharacterized conser 98.5 1.1E-07 2.4E-12 75.6 4.5 87 193-279 174-260 (418)
28 PF14580 LRR_9: Leucine-rich r 98.5 4.6E-08 9.9E-13 73.7 1.0 127 165-302 18-148 (175)
29 KOG3864 Uncharacterized conser 98.4 2.2E-07 4.8E-12 69.8 3.3 105 193-299 102-209 (221)
30 KOG3864 Uncharacterized conser 98.4 6.2E-07 1.3E-11 67.4 5.1 105 167-273 102-209 (221)
31 KOG2982 Uncharacterized conser 98.3 3.3E-07 7.1E-12 73.0 2.9 194 100-304 61-259 (418)
32 COG5238 RNA1 Ran GTPase-activa 98.3 2.2E-05 4.8E-10 62.1 12.3 188 112-305 28-253 (388)
33 KOG0618 Serine/threonine phosp 98.3 4.8E-08 1E-12 88.7 -3.3 41 263-305 447-487 (1081)
34 smart00256 FBOX A Receptor for 98.3 8.3E-07 1.8E-11 49.9 2.7 38 22-60 2-39 (41)
35 KOG0618 Serine/threonine phosp 98.0 1E-06 2.2E-11 80.4 -0.3 129 141-280 360-488 (1081)
36 KOG1259 Nischarin, modulator o 98.0 2E-06 4.3E-11 68.9 1.3 129 138-279 282-410 (490)
37 KOG1859 Leucine-rich repeat pr 98.0 8.2E-07 1.8E-11 79.0 -1.1 109 191-309 186-294 (1096)
38 PF00646 F-box: F-box domain; 98.0 4.8E-06 1E-10 48.5 2.3 38 21-59 6-43 (48)
39 KOG4237 Extracellular matrix p 98.0 1.1E-06 2.3E-11 72.8 -0.7 65 238-305 269-333 (498)
40 PLN03150 hypothetical protein; 98.0 1.7E-05 3.7E-10 72.7 6.6 112 193-309 419-530 (623)
41 KOG1259 Nischarin, modulator o 98.0 1.5E-06 3.3E-11 69.5 -0.4 125 166-305 284-410 (490)
42 KOG4658 Apoptotic ATPase [Sign 97.9 8E-06 1.7E-10 77.0 3.8 134 83-227 544-677 (889)
43 PF13855 LRR_8: Leucine rich r 97.9 1.9E-06 4.2E-11 53.1 -0.9 39 239-278 21-59 (61)
44 PF13855 LRR_8: Leucine rich r 97.9 1.4E-06 2.9E-11 53.8 -1.7 60 243-305 1-60 (61)
45 PRK15387 E3 ubiquitin-protein 97.8 2.4E-05 5.1E-10 72.5 4.4 14 292-305 443-456 (788)
46 KOG0617 Ras suppressor protein 97.7 1.8E-07 3.9E-12 68.5 -9.0 37 215-253 147-183 (264)
47 KOG1859 Leucine-rich repeat pr 97.6 4.5E-06 9.7E-11 74.5 -2.3 107 163-279 184-290 (1096)
48 PRK15387 E3 ubiquitin-protein 97.6 0.00011 2.3E-09 68.3 5.1 32 268-305 382-413 (788)
49 PRK15370 E3 ubiquitin-protein 97.5 0.00011 2.4E-09 68.3 5.2 32 243-278 346-377 (754)
50 KOG2123 Uncharacterized conser 97.5 4.1E-05 8.8E-10 60.8 1.2 114 166-290 19-136 (388)
51 PRK15370 E3 ubiquitin-protein 97.4 0.00033 7.2E-09 65.3 5.8 100 192-305 325-426 (754)
52 smart00367 LRR_CC Leucine-rich 97.3 0.00036 7.7E-09 34.5 2.8 24 267-290 1-24 (26)
53 PLN03150 hypothetical protein; 97.3 0.00039 8.4E-09 64.0 4.9 83 219-305 419-501 (623)
54 PF12799 LRR_4: Leucine Rich r 97.2 0.00055 1.2E-08 38.7 3.7 38 243-283 1-38 (44)
55 KOG4308 LRR-containing protein 97.2 7.8E-05 1.7E-09 65.7 -0.1 210 86-304 89-328 (478)
56 KOG4308 LRR-containing protein 97.1 0.00034 7.3E-09 61.7 2.4 13 241-253 288-300 (478)
57 KOG4658 Apoptotic ATPase [Sign 97.0 0.00093 2E-08 63.5 5.2 60 163-227 568-627 (889)
58 COG4886 Leucine-rich repeat (L 96.9 0.001 2.2E-08 58.0 3.8 146 141-303 141-286 (394)
59 KOG2123 Uncharacterized conser 96.8 0.0004 8.6E-09 55.4 0.4 110 140-261 19-132 (388)
60 KOG0472 Leucine-rich repeat pr 96.8 0.0007 1.5E-08 56.9 1.8 40 238-279 500-539 (565)
61 smart00367 LRR_CC Leucine-rich 96.6 0.0029 6.2E-08 31.2 2.9 24 242-265 1-24 (26)
62 KOG2739 Leucine-rich acidic nu 96.6 0.00065 1.4E-08 53.6 0.7 84 165-250 64-150 (260)
63 PRK15386 type III secretion pr 96.6 0.0031 6.8E-08 54.1 4.5 135 112-278 50-187 (426)
64 KOG2739 Leucine-rich acidic nu 96.6 0.0008 1.7E-08 53.1 0.9 86 139-226 64-151 (260)
65 KOG1644 U2-associated snRNP A' 96.5 0.00072 1.6E-08 51.4 0.1 107 165-278 41-150 (233)
66 KOG0472 Leucine-rich repeat pr 96.4 0.0017 3.7E-08 54.6 1.8 109 189-306 432-540 (565)
67 PF12799 LRR_4: Leucine Rich r 96.2 0.0076 1.6E-07 34.0 3.3 37 218-257 1-37 (44)
68 KOG0617 Ras suppressor protein 96.1 5.7E-05 1.2E-09 55.7 -7.1 128 165-304 32-160 (264)
69 COG4886 Leucine-rich repeat (L 95.8 0.0086 1.9E-07 52.2 3.6 147 115-278 141-287 (394)
70 KOG0281 Beta-TrCP (transducin 95.6 0.0048 1E-07 50.6 1.0 40 24-64 85-124 (499)
71 PF13516 LRR_6: Leucine Rich r 95.5 0.012 2.5E-07 28.3 1.8 21 268-289 2-22 (24)
72 KOG0531 Protein phosphatase 1, 95.3 0.0059 1.3E-07 53.6 0.7 127 138-279 70-197 (414)
73 PRK15386 type III secretion pr 95.2 0.024 5.3E-07 48.8 4.0 135 137-304 49-187 (426)
74 KOG1644 U2-associated snRNP A' 95.1 0.022 4.8E-07 43.5 3.1 106 191-303 41-149 (233)
75 KOG2997 F-box protein FBX9 [Ge 94.9 0.011 2.3E-07 48.1 1.0 44 20-64 108-157 (366)
76 KOG4579 Leucine-rich repeat (L 94.7 0.0083 1.8E-07 42.9 -0.1 106 167-278 28-133 (177)
77 KOG4579 Leucine-rich repeat (L 94.5 0.017 3.7E-07 41.4 1.0 84 193-279 28-111 (177)
78 smart00368 LRR_RI Leucine rich 94.4 0.074 1.6E-06 26.6 3.1 24 268-292 2-25 (28)
79 PF13516 LRR_6: Leucine Rich r 94.4 0.031 6.7E-07 26.7 1.6 23 242-265 1-23 (24)
80 PLN03215 ascorbic acid mannose 94.3 0.034 7.5E-07 47.2 2.6 39 15-54 2-41 (373)
81 KOG0531 Protein phosphatase 1, 92.1 0.066 1.4E-06 47.0 1.2 112 137-261 92-204 (414)
82 smart00368 LRR_RI Leucine rich 90.7 0.42 9.2E-06 23.8 2.8 22 243-265 2-23 (28)
83 KOG3763 mRNA export factor TAP 88.5 1.1 2.3E-05 40.0 5.3 40 188-227 214-253 (585)
84 PF13504 LRR_7: Leucine rich r 87.9 0.41 8.9E-06 20.7 1.3 10 269-278 2-11 (17)
85 KOG0274 Cdc4 and related F-box 86.8 0.27 5.9E-06 44.4 0.9 50 14-63 104-153 (537)
86 KOG3763 mRNA export factor TAP 83.6 2.2 4.8E-05 38.1 4.8 40 111-150 215-254 (585)
87 PF07723 LRR_2: Leucine Rich R 83.1 0.91 2E-05 22.2 1.4 26 269-294 1-26 (26)
88 PF00560 LRR_1: Leucine Rich R 73.8 1.4 3E-05 20.4 0.4 13 269-282 1-13 (22)
89 PF13306 LRR_5: Leucine rich r 71.7 1 2.3E-05 31.9 -0.4 102 190-303 10-112 (129)
90 KOG0532 Leucine-rich repeat (L 70.4 0.41 8.8E-06 42.8 -3.2 85 190-282 164-248 (722)
91 PF13013 F-box-like_2: F-box-l 67.1 6.1 0.00013 27.3 2.6 28 20-47 23-51 (109)
92 smart00369 LRR_TYP Leucine-ric 60.9 8.1 0.00017 18.4 1.7 11 268-278 2-12 (26)
93 smart00370 LRR Leucine-rich re 60.9 8.1 0.00017 18.4 1.7 11 268-278 2-12 (26)
94 KOG3735 Tropomodulin and leiom 56.0 38 0.00082 28.6 5.6 18 242-260 254-271 (353)
95 KOG3735 Tropomodulin and leiom 55.2 41 0.00089 28.4 5.7 93 132-226 190-291 (353)
96 KOG0532 Leucine-rich repeat (L 51.1 2.6 5.6E-05 38.0 -1.7 126 141-278 144-270 (722)
97 smart00365 LRR_SD22 Leucine-ri 49.9 17 0.00037 17.7 1.8 11 243-253 2-12 (26)
98 PF09372 PRANC: PRANC domain; 44.8 15 0.00032 24.7 1.5 26 15-41 70-95 (97)
99 PF03382 DUF285: Mycoplasma pr 33.5 23 0.00049 24.9 1.1 6 164-169 59-64 (120)
100 smart00446 LRRcap occurring C- 33.0 39 0.00085 16.5 1.5 16 288-303 7-22 (26)
101 PF12586 DUF3760: Protein of u 31.0 26 0.00056 19.9 0.8 38 24-63 7-44 (46)
102 KOG4242 Predicted myosin-I-bin 26.2 1.3E+02 0.0029 27.0 4.6 48 241-290 438-489 (553)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.97 E-value=2.5e-31 Score=215.42 Aligned_cols=288 Identities=25% Similarity=0.411 Sum_probs=199.1
Q ss_pred hhhcccccccCCchHHHHHHHcCCCccchhHHhhccHHHHHHHccCCCcceeecccccccch-hhHHHHhhccccCCcCe
Q 021374 10 AAEEEETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAG-NRLVAALSIPRYRHVRE 88 (313)
Q Consensus 10 ~~~~~~~~~~~~~peiL~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~ 88 (313)
..+.+..| .+|||++.+||++|+...+++++++|+.|... +.+..-|+++|+..+..-. ..+++.+.......+++
T Consensus 66 ~~~~~~~~--~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~-AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~ 142 (483)
T KOG4341|consen 66 ADNNSISR--SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKL-ALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKE 142 (483)
T ss_pred hhcccccc--cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhh-hhccccceeeehhcchhcCCCcceehHhhhhcccccc
Confidence 44556678 77999999999999999999999999999976 7899999999987655431 12222222222234555
Q ss_pred eeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCC
Q 021374 89 INLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHI 168 (313)
Q Consensus 89 L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 168 (313)
|.+.++..+.+..+..+...| +++++|.+.+|..+++..+..+...|++|+.|++..|..+++..++.++..|++|
T Consensus 143 LSlrG~r~v~~sslrt~~~~C----pnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 143 LSLRGCRAVGDSSLRTFASNC----PNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccCCcchhhHHhhhC----CchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 555555444444444444333 5555555555544555544444455555555555544445554444444445555
Q ss_pred cEEecc--------------------------CCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCE
Q 021374 169 IDLNLS--------------------------GCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRS 222 (313)
Q Consensus 169 ~~L~l~--------------------------~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 222 (313)
++|+++ ||....+..+.....+++-+..+++..|+.+++.++..+...+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 555444 444444444444445555666777777777788777777777888888
Q ss_pred EEeCCCCCCCHHHHHHhh-cCCCCCEEecCCCCCCChHHHHHhhC-CCCCceeeccCCCCCChHHHHHHHHhCCCccEee
Q 021374 223 LNLYALSGFTDEAYKKIS-LLAHLKFLDLCGAQNLSDEGLACIAK-CKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLS 300 (313)
Q Consensus 223 L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~ 300 (313)
|..++|..+++..+..++ .+++|+.|.+++|..+++.++..+++ ++.|+.+++.+|..+++..+..+..+||.|++++
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 888888888888888887 68899999999998889888888875 8899999999988888888888888999999998
Q ss_pred cCCc
Q 021374 301 SGAE 304 (313)
Q Consensus 301 l~~~ 304 (313)
++.|
T Consensus 379 lshc 382 (483)
T KOG4341|consen 379 LSHC 382 (483)
T ss_pred hhhh
Confidence 8865
No 2
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.6e-27 Score=183.72 Aligned_cols=271 Identities=21% Similarity=0.346 Sum_probs=202.6
Q ss_pred cccccCCch-HHHHHHHcCCCccchhHHhhccHHHHHHHccCCCcceeecccccccchhhH-------------------
Q 021374 15 ETWSKETVP-KVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRL------------------- 74 (313)
Q Consensus 15 ~~~~~~~~p-eiL~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~~l~~~~~~~~~~~~------------------- 74 (313)
..|. -+| |++..||+.|..+++.+++.||++|++. +....+|..+|+.......+..
T Consensus 96 v~~~--slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~-~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~~~~ 172 (419)
T KOG2120|consen 96 VSWD--SLPDEILLGIFSCLCKKELLKVSGVCKRFYRL-ASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLARSFMD 172 (419)
T ss_pred CCcc--cCCHHHHHHHHHhccHHHHHHHHHHHHHHhhc-cccccceeeeccCCCccChhHHHHHHhCCeEEEEcchhhhc
Confidence 3474 467 6999999999999999999999999987 7889999999987543321111
Q ss_pred ----HHHhhccccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCC
Q 021374 75 ----VAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWN 150 (313)
Q Consensus 75 ----~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 150 (313)
.+.+.. --..++.+|++.. .++...+..+.+.| .+|+.|.+.+. .+++.....+++ -.+|+.|++++|
T Consensus 173 ~prlae~~~~-frsRlq~lDLS~s-~it~stl~~iLs~C----~kLk~lSlEg~-~LdD~I~~~iAk-N~~L~~lnlsm~ 244 (419)
T KOG2120|consen 173 QPRLAEHFSP-FRSRLQHLDLSNS-VITVSTLHGILSQC----SKLKNLSLEGL-RLDDPIVNTIAK-NSNLVRLNLSMC 244 (419)
T ss_pred Cchhhhhhhh-hhhhhHHhhcchh-heeHHHHHHHHHHH----Hhhhhcccccc-ccCcHHHHHHhc-cccceeeccccc
Confidence 111100 0124677777763 56667777776666 78888888874 666666655644 468888888888
Q ss_pred cccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHh-CCCCcEEecCCCC-CCCHHHHHHHHhhCCCCCEEEeCCC
Q 021374 151 VRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADN-YQELESLNLTRCV-KLTDGGLQKILIKCSSLRSLNLYAL 228 (313)
Q Consensus 151 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~-~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~ 228 (313)
..++..++..+..+|..|..|+++.|.-.++. +..+..+ -++|+.|+++||. .+....+..+...||+|.+|+++++
T Consensus 245 sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 245 SGFTENALQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS 323 (419)
T ss_pred cccchhHHHHHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccc
Confidence 88888888888888888888888888544443 4444333 3788888888863 2333456677788999999999998
Q ss_pred CCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEe
Q 021374 229 SGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFL 299 (313)
Q Consensus 229 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 299 (313)
..+++..+..+.+++.|++|.++.|..+....+..+...|+|.+|++.+| ++|..+..+.+.+|+|+.-
T Consensus 324 v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~--vsdt~mel~~e~~~~lkin 392 (419)
T KOG2120|consen 324 VMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC--VSDTTMELLKEMLSHLKIN 392 (419)
T ss_pred cccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc--cCchHHHHHHHhCcccccc
Confidence 88888888888899999999999998888777777778899999999876 6677777788888887653
No 3
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.88 E-value=2.8e-23 Score=168.90 Aligned_cols=243 Identities=27% Similarity=0.469 Sum_probs=197.5
Q ss_pred cceeecccccccchhhHHHHhhccccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHh
Q 021374 58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS 137 (313)
Q Consensus 58 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 137 (313)
..+.+.+.+.....+....-+ ...+|+++.|.+.+|..+++..+..+...| ++|++|++..|..+++..+..+..
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~-~~~CpnIehL~l~gc~~iTd~s~~sla~~C----~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTF-ASNCPNIEHLALYGCKKITDSSLLSLARYC----RKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred ccccccccccccCCcchhhHH-hhhCCchhhhhhhcceeccHHHHHHHHHhc----chhhhhhhcccchhHHHHHHHHHH
Confidence 445666666665554444433 346888888888888888888888887777 888888888888888888888888
Q ss_pred cCCCCcEEEecCCcccCHHHHHH--------------------------HHhcCCCCcEEeccCCcccchHHHHHHHHhC
Q 021374 138 TCPELKVFSIYWNVRVTDIGIQH--------------------------LVKNCKHIIDLNLSGCKNLLDKSLQLIADNY 191 (313)
Q Consensus 138 ~~~~L~~L~l~~~~~~~~~~~~~--------------------------~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 191 (313)
.|++|++|++++|+.+.+.+++. +...++.+.++++..|..++|.++..+...+
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 88888888888876665533333 3334555667778899899999999998899
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhh-cCCCCCEEecCCCCCCChHHHHHhh-CCCC
Q 021374 192 QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKIS-LLAHLKFLDLCGAQNLSDEGLACIA-KCKN 269 (313)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~ 269 (313)
..|+.|..++|..+++..+.++..++++|+.|-+..|..+++..+..++ +++.|+.+++..+..+++..+..++ +|+.
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 9999999999999999989999999999999999999999999999998 7999999999999888888777776 5999
Q ss_pred CceeeccCCCCCChHHHHHHHH---hCCCccEeecCCcc
Q 021374 270 LVSLNLTWCVRITDVGVMAIAE---GCSSLEFLSSGAEM 305 (313)
Q Consensus 270 L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~ 305 (313)
|+.+.++.|..++++++..+.. +...|+.+.+++|.
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p 412 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP 412 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCC
Confidence 9999999999999998877764 44578888888765
No 4
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.6e-16 Score=124.70 Aligned_cols=201 Identities=21% Similarity=0.357 Sum_probs=158.2
Q ss_pred ceeecccccccchhhHHHHhhccccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhc
Q 021374 59 WLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST 138 (313)
Q Consensus 59 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 138 (313)
.+.+|+++........... +..|.+|+.|.+++. .+.+.....++.. .+|+.|+++.|..++..++..+...
T Consensus 187 lq~lDLS~s~it~stl~~i--Ls~C~kLk~lSlEg~-~LdD~I~~~iAkN-----~~L~~lnlsm~sG~t~n~~~ll~~s 258 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGI--LSQCSKLKNLSLEGL-RLDDPIVNTIAKN-----SNLVRLNLSMCSGFTENALQLLLSS 258 (419)
T ss_pred hHHhhcchhheeHHHHHHH--HHHHHhhhhcccccc-ccCcHHHHHHhcc-----ccceeeccccccccchhHHHHHHHh
Confidence 4456666554433333332 447899999999985 5777777776543 7899999999999999999999999
Q ss_pred CCCCcEEEecCCcccCHHHHHHHHhc-CCCCcEEeccCCc-ccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhh
Q 021374 139 CPELKVFSIYWNVRVTDIGIQHLVKN-CKHIIDLNLSGCK-NLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIK 216 (313)
Q Consensus 139 ~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 216 (313)
|..|..|+|++| ....+.+..+..+ .++|..|+++||. ++.+..+..+...||+|.+|++++|..++++.+.. +-.
T Consensus 259 cs~L~~LNlsWc-~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~-~~k 336 (419)
T KOG2120|consen 259 CSRLDELNLSWC-FLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFK 336 (419)
T ss_pred hhhHhhcCchHh-hccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH-HHh
Confidence 999999999999 5544445544433 4799999999974 45566788888899999999999998888855554 578
Q ss_pred CCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhh-CCCCCc
Q 021374 217 CSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIA-KCKNLV 271 (313)
Q Consensus 217 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~ 271 (313)
++.|++|.++.|+.+..+.+..+...|+|.+|++.+| ++|.....+. .+++|+
T Consensus 337 f~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~--vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 337 FNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC--VSDTTMELLKEMLSHLK 390 (419)
T ss_pred cchheeeehhhhcCCChHHeeeeccCcceEEEEeccc--cCchHHHHHHHhCcccc
Confidence 8999999999999999988888899999999999998 6666655554 366655
No 5
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.63 E-value=1.5e-13 Score=115.84 Aligned_cols=214 Identities=24% Similarity=0.325 Sum_probs=124.3
Q ss_pred ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHH---HhcC-CCCcEEEecCCcccCHHH
Q 021374 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII---SSTC-PELKVFSIYWNVRVTDIG 157 (313)
Q Consensus 82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~-~~L~~L~l~~~~~~~~~~ 157 (313)
..++|+.|+++++. +.......+.. .... ++|++|+++++ .+.+.+...+ ...+ ++|+.|++++| .++..+
T Consensus 79 ~~~~L~~L~l~~~~-~~~~~~~~~~~-l~~~-~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~ 153 (319)
T cd00116 79 KGCGLQELDLSDNA-LGPDGCGVLES-LLRS-SSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGAS 153 (319)
T ss_pred hcCceeEEEccCCC-CChhHHHHHHH-Hhcc-CcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCC-cCCchH
Confidence 36778888887653 32222222221 1222 55888888776 4444333332 2334 77788888877 555333
Q ss_pred H---HHHHhcCCCCcEEeccCCcccchHHHHHHHH---hCCCCcEEecCCCCCCCHHHHH---HHHhhCCCCCEEEeCCC
Q 021374 158 I---QHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRCVKLTDGGLQ---KILIKCSSLRSLNLYAL 228 (313)
Q Consensus 158 ~---~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~~L~~L~l~~~ 228 (313)
. ......+++|++|+++++ .+++..+..+.. ..++|++|++++| .+.+.+.. ..+..+++|+.|+++++
T Consensus 154 ~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 154 CEALAKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred HHHHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC
Confidence 2 223345567888888775 455555544433 2357888888775 55544433 33445677888888774
Q ss_pred CCCCHHHHHHhhc-----CCCCCEEecCCCCCCChHHHHH----hhCCCCCceeeccCCCCCChHHHHHHHH---hC-CC
Q 021374 229 SGFTDEAYKKISL-----LAHLKFLDLCGAQNLSDEGLAC----IAKCKNLVSLNLTWCVRITDVGVMAIAE---GC-SS 295 (313)
Q Consensus 229 ~~~~~~~~~~l~~-----~~~L~~L~l~~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~-~~ 295 (313)
.+++..+..+.. .++|++|++++| .+++.+... +..+++|+++++++| .+++.+...+.+ .. ++
T Consensus 232 -~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~ 308 (319)
T cd00116 232 -NLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGN-KFGEEGAQLLAESLLEPGNE 308 (319)
T ss_pred -cCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCc
Confidence 566544444431 367888888877 666444333 334677888888877 777665444432 33 57
Q ss_pred ccEeecCCcc
Q 021374 296 LEFLSSGAEM 305 (313)
Q Consensus 296 L~~L~l~~~~ 305 (313)
|+.+++..+.
T Consensus 309 ~~~~~~~~~~ 318 (319)
T cd00116 309 LESLWVKDDS 318 (319)
T ss_pred hhhcccCCCC
Confidence 7777777653
No 6
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.60 E-value=3.7e-13 Score=113.49 Aligned_cols=236 Identities=25% Similarity=0.288 Sum_probs=157.0
Q ss_pred ceeecccccccchhh---HHHHhhccccCCcCeeeccCCccCc--hHHHHHHHHHhcCCCCCCcEEecCCCCCC--ChHH
Q 021374 59 WLVIDLREMNNAGNR---LVAALSIPRYRHVREINLEFAQDIE--DRHLELLKTKCLGSLQDLESLNLNGCQKI--SDKG 131 (313)
Q Consensus 59 ~~~l~~~~~~~~~~~---~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~l~~~~~~~~~~L~~L~l~~~~~~--~~~~ 131 (313)
.+.+++......... +... ....+.++.+++++.. +. ...+..+... +..+++|+.|+++++... ....
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~--l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASA--LRPQPSLKELCLSLNE-TGRIPRGLQSLLQG-LTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHH--HhhCCCceEEeccccc-cCCcchHHHHHHHH-HHhcCceeEEEccCCCCChhHHHH
Confidence 466777665533221 2222 2355779999998754 33 3334333333 345789999999987432 1223
Q ss_pred HHHHHhcCCCCcEEEecCCcccCHHHHHHH---HhcC-CCCcEEeccCCcccchHHH---HHHHHhCCCCcEEecCCCCC
Q 021374 132 IEIISSTCPELKVFSIYWNVRVTDIGIQHL---VKNC-KHIIDLNLSGCKNLLDKSL---QLIADNYQELESLNLTRCVK 204 (313)
Q Consensus 132 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~-~~L~~L~l~~~~~~~~~~l---~~l~~~~~~L~~L~l~~~~~ 204 (313)
+..+... ++|++|+++++ .+++.+...+ ...+ ++|+.|++++|. ++.... ......+++|++|++++| .
T Consensus 101 ~~~l~~~-~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n-~ 176 (319)
T cd00116 101 LESLLRS-SSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANN-G 176 (319)
T ss_pred HHHHhcc-CcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCC-C
Confidence 3334344 66999999988 6775554433 3345 899999999974 553333 333345689999999995 6
Q ss_pred CCHHHHHHHH---hhCCCCCEEEeCCCCCCCHHHHHH----hhcCCCCCEEecCCCCCCChHHHHHhhC-----CCCCce
Q 021374 205 LTDGGLQKIL---IKCSSLRSLNLYALSGFTDEAYKK----ISLLAHLKFLDLCGAQNLSDEGLACIAK-----CKNLVS 272 (313)
Q Consensus 205 ~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~~~~~~~~l~~-----~~~L~~ 272 (313)
+.+.++..+. ...++|++|+++++ .+.+..... +..+++|++|++++| .+++.++..+.. .++|++
T Consensus 177 l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~ 254 (319)
T cd00116 177 IGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLT 254 (319)
T ss_pred CchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceE
Confidence 7765655443 44569999999986 566554443 346889999999998 688766665543 379999
Q ss_pred eeccCCCCCChHHHHHHHH---hCCCccEeecCCcc
Q 021374 273 LNLTWCVRITDVGVMAIAE---GCSSLEFLSSGAEM 305 (313)
Q Consensus 273 L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~ 305 (313)
|++++| .+++.+...+.+ .+++|+.+++++|.
T Consensus 255 L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 255 LSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred EEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 999999 888766655543 45689999999875
No 7
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.51 E-value=1.5e-13 Score=122.49 Aligned_cols=217 Identities=35% Similarity=0.548 Sum_probs=131.7
Q ss_pred cCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCC-CCCCChH--HHHHHHhcCCCCcEEEecCCcccCHHHHH
Q 021374 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNG-CQKISDK--GIEIISSTCPELKVFSIYWNVRVTDIGIQ 159 (313)
Q Consensus 83 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~-~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 159 (313)
++.++.+.+..+..+++..+..+...+ ++|+.|++++ +...... ....+...|++|+.|+++++..+++.++.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKC----PNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhC----chhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence 577777777777666665555554443 7777777776 2222221 22335566677778887777557777777
Q ss_pred HHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCC---CCCHHHH
Q 021374 160 HLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALS---GFTDEAY 236 (313)
Q Consensus 160 ~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~ 236 (313)
.++..|++|+.|.+.+|..+++.++..+...+++|++|++++|..+++.++..+..+|++|+.|.+..+. .+++..+
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l 342 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSL 342 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHH
Confidence 7777777888887777766777777777777777888888777777777777666677776665554432 2222221
Q ss_pred H-------------HhhcCCCCCEEecCCCCCCChHHH-HHhhCCCC--------------CceeeccCCCCCChHHHHH
Q 021374 237 K-------------KISLLAHLKFLDLCGAQNLSDEGL-ACIAKCKN--------------LVSLNLTWCVRITDVGVMA 288 (313)
Q Consensus 237 ~-------------~l~~~~~L~~L~l~~~~~~~~~~~-~~l~~~~~--------------L~~L~l~~~~~~~~~~~~~ 288 (313)
. .+..+++++.+.+..+. .++.+. ..+.+|+. ++.|++..|..+++..+..
T Consensus 343 ~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~ 421 (482)
T KOG1947|consen 343 SGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRC 421 (482)
T ss_pred HHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHH
Confidence 1 11245555555555553 333332 12223333 3666666666666666655
Q ss_pred HHHhCCCccEeecCCc
Q 021374 289 IAEGCSSLEFLSSGAE 304 (313)
Q Consensus 289 l~~~~~~L~~L~l~~~ 304 (313)
....+..++.+++.++
T Consensus 422 ~~~~~~~~~~l~~~~~ 437 (482)
T KOG1947|consen 422 LADSCSNLKDLDLSGC 437 (482)
T ss_pred HhhhhhccccCCccCc
Confidence 5544555666666554
No 8
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.45 E-value=9.4e-13 Score=117.44 Aligned_cols=207 Identities=30% Similarity=0.505 Sum_probs=149.9
Q ss_pred ccCCcCeeeccCC-ccCchH--HHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHH
Q 021374 82 RYRHVREINLEFA-QDIEDR--HLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGI 158 (313)
Q Consensus 82 ~~~~l~~L~l~~~-~~~~~~--~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 158 (313)
.++.|+.|+++++ ...... ....+.. .+++|+.|+++++..+++.++..+...|++|+.|.+.+|..+++.++
T Consensus 212 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~----~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl 287 (482)
T KOG1947|consen 212 KCPNLEELDLSGCCLLITLSPLLLLLLLS----ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGL 287 (482)
T ss_pred hCchhheecccCcccccccchhHhhhhhh----hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHH
Confidence 5788888888762 222221 2223333 34888999999886688888888888899999999888866888999
Q ss_pred HHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCC---CCCHH------------HHHHHHhhCCCCCEE
Q 021374 159 QHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCV---KLTDG------------GLQKILIKCSSLRSL 223 (313)
Q Consensus 159 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~---~~~~~------------~~~~~~~~~~~L~~L 223 (313)
..+.+.|++|++|++++|..+++.++..+...|++|+.|.+..+. .+.+. ........+++++.+
T Consensus 288 ~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~ 367 (482)
T KOG1947|consen 288 VSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDL 367 (482)
T ss_pred HHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchh
Confidence 999888999999999998888888888887778887776655432 23322 233345567778777
Q ss_pred EeCCCCCCCHHHH-HHhhcCCC--------------CCEEecCCCCCCChHHHHHhhC-CCCCceeeccCCCCCChHHHH
Q 021374 224 NLYALSGFTDEAY-KKISLLAH--------------LKFLDLCGAQNLSDEGLACIAK-CKNLVSLNLTWCVRITDVGVM 287 (313)
Q Consensus 224 ~l~~~~~~~~~~~-~~l~~~~~--------------L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~ 287 (313)
.+..+. ..+.+. ..+..+|+ ++.|.++.+..+++..+..... +.+++.+++.+|..++.....
T Consensus 368 ~l~~~~-~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 446 (482)
T KOG1947|consen 368 SLSYCG-ISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSLE 446 (482)
T ss_pred hhhhhh-ccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhhh
Confidence 777655 443332 23334443 5899999998899888877765 889999999999888888877
Q ss_pred HHHHhC
Q 021374 288 AIAEGC 293 (313)
Q Consensus 288 ~l~~~~ 293 (313)
.+....
T Consensus 447 ~~~~~~ 452 (482)
T KOG1947|consen 447 GFASNC 452 (482)
T ss_pred hhhccc
Confidence 666543
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.44 E-value=3.1e-13 Score=130.30 Aligned_cols=205 Identities=21% Similarity=0.209 Sum_probs=87.9
Q ss_pred ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHH
Q 021374 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 161 (313)
Q Consensus 82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 161 (313)
.+++|+.|+++++. +.......+ +..+.+|++|+++++. +..... ...+++|++|+++++ .+... +...
T Consensus 91 ~l~~L~~L~Ls~n~-~~~~ip~~~----~~~l~~L~~L~Ls~n~-l~~~~p---~~~l~~L~~L~Ls~n-~~~~~-~p~~ 159 (968)
T PLN00113 91 RLPYIQTINLSNNQ-LSGPIPDDI----FTTSSSLRYLNLSNNN-FTGSIP---RGSIPNLETLDLSNN-MLSGE-IPND 159 (968)
T ss_pred CCCCCCEEECCCCc-cCCcCChHH----hccCCCCCEEECcCCc-cccccC---ccccCCCCEEECcCC-ccccc-CChH
Confidence 56788888888753 222111112 2244667777766642 221100 023455556655555 33221 1111
Q ss_pred HhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCC-----------------------CCCHHHHHHHHhhCC
Q 021374 162 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCV-----------------------KLTDGGLQKILIKCS 218 (313)
Q Consensus 162 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-----------------------~~~~~~~~~~~~~~~ 218 (313)
...+++|++|+++++. +.......+ ..+++|++|+++++. .+.. .++..+..++
T Consensus 160 ~~~l~~L~~L~L~~n~-l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~ 236 (968)
T PLN00113 160 IGSFSSLKVLDLGGNV-LVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG-EIPYEIGGLT 236 (968)
T ss_pred HhcCCCCCEEECccCc-ccccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC-cCChhHhcCC
Confidence 2345555555555532 211111111 224555555555431 1111 1111223444
Q ss_pred CCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccE
Q 021374 219 SLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEF 298 (313)
Q Consensus 219 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 298 (313)
+|+.|+++++ .+.......++.+++|++|++++| .++......+.++++|++|++++| .++.... ..+..+++|+.
T Consensus 237 ~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p-~~~~~l~~L~~ 312 (968)
T PLN00113 237 SLNHLDLVYN-NLTGPIPSSLGNLKNLQYLFLYQN-KLSGPIPPSIFSLQKLISLDLSDN-SLSGEIP-ELVIQLQNLEI 312 (968)
T ss_pred CCCEEECcCc-eeccccChhHhCCCCCCEEECcCC-eeeccCchhHhhccCcCEEECcCC-eeccCCC-hhHcCCCCCcE
Confidence 4445544442 222222333444555555555554 333322333444555555555555 3332221 12234566666
Q ss_pred eecCCc
Q 021374 299 LSSGAE 304 (313)
Q Consensus 299 L~l~~~ 304 (313)
|++++|
T Consensus 313 L~l~~n 318 (968)
T PLN00113 313 LHLFSN 318 (968)
T ss_pred EECCCC
Confidence 666655
No 10
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.38 E-value=1e-11 Score=99.89 Aligned_cols=243 Identities=21% Similarity=0.233 Sum_probs=149.5
Q ss_pred cceeecccccccchh---hHHHHhhccccCCcCeeeccCCc--cCchH---HHHHHHHHhcCCCCCCcEEecCCCCCCCh
Q 021374 58 LWLVIDLREMNNAGN---RLVAALSIPRYRHVREINLEFAQ--DIEDR---HLELLKTKCLGSLQDLESLNLNGCQKISD 129 (313)
Q Consensus 58 ~~~~l~~~~~~~~~~---~~~~~~~~~~~~~l~~L~l~~~~--~~~~~---~~~~l~~~~~~~~~~L~~L~l~~~~~~~~ 129 (313)
-+..+++++...... .+...+ ..-+.|+..+++... .+.+. .+..+.+. +...++|+.|+|+.+ -+..
T Consensus 31 s~~~l~lsgnt~G~EAa~~i~~~L--~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~a-L~~~~~L~~ldLSDN-A~G~ 106 (382)
T KOG1909|consen 31 SLTKLDLSGNTFGTEAARAIAKVL--ASKKELREVNLSDMFTGRLKDEIPEALKMLSKA-LLGCPKLQKLDLSDN-AFGP 106 (382)
T ss_pred ceEEEeccCCchhHHHHHHHHHHH--hhcccceeeehHhhhcCCcHHHHHHHHHHHHHH-HhcCCceeEeecccc-ccCc
Confidence 346677776443321 122222 234577777776421 11111 22222222 445568888888874 3333
Q ss_pred ---HHHHHHHhcCCCCcEEEecCCcccCHHHHHHH------------HhcCCCCcEEeccCCcccchHHH---HHHHHhC
Q 021374 130 ---KGIEIISSTCPELKVFSIYWNVRVTDIGIQHL------------VKNCKHIIDLNLSGCKNLLDKSL---QLIADNY 191 (313)
Q Consensus 130 ---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------------~~~~~~L~~L~l~~~~~~~~~~l---~~l~~~~ 191 (313)
.++..+...|.+|+.|.|.+| .+...+-..+ +..-+.|+.+..... .+.+.+. .......
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSH 184 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhc
Confidence 456666777888888888887 6655443321 123357787777663 3444333 3333446
Q ss_pred CCCcEEecCCCCCCCHHHHH---HHHhhCCCCCEEEeCCCCCCCHHHHHHh----hcCCCCCEEecCCCCCCChHHHHHh
Q 021374 192 QELESLNLTRCVKLTDGGLQ---KILIKCSSLRSLNLYALSGFTDEAYKKI----SLLAHLKFLDLCGAQNLSDEGLACI 264 (313)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~~~~~~~l 264 (313)
|+|+.+++.. +.+...++. .-+..|++|+.|++.+ +.++..+-..+ ..+++|+.|++++| .+.+.+...+
T Consensus 185 ~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~a~ 261 (382)
T KOG1909|consen 185 PTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKALSSWPHLRELNLGDC-LLENEGAIAF 261 (382)
T ss_pred cccceEEEec-ccccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHHHhcccchheeeccccc-ccccccHHHH
Confidence 8889988887 566655553 3356789999999987 45555554444 46788999999998 6776665554
Q ss_pred h-----CCCCCceeeccCCCCCChHHHHHHHH---hCCCccEeecCCccccccc
Q 021374 265 A-----KCKNLVSLNLTWCVRITDVGVMAIAE---GCSSLEFLSSGAEMNCCSC 310 (313)
Q Consensus 265 ~-----~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~ 310 (313)
. ..|+|+.|.+.+| .++-.+...+.. ..|.|++|+|++|..+..|
T Consensus 262 ~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l~e~d 314 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRLGEKD 314 (382)
T ss_pred HHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccccccc
Confidence 3 3789999999988 777666444432 3678999999988764333
No 11
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.37 E-value=1.6e-12 Score=125.45 Aligned_cols=182 Identities=19% Similarity=0.164 Sum_probs=79.7
Q ss_pred CCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhC
Q 021374 112 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY 191 (313)
Q Consensus 112 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 191 (313)
.+++|+.|+++++. +....... ...+++|++|++++| .+.... ......+++|+.|+++++ .++......+ ..+
T Consensus 162 ~l~~L~~L~L~~n~-l~~~~p~~-~~~l~~L~~L~L~~n-~l~~~~-p~~l~~l~~L~~L~L~~n-~l~~~~p~~l-~~l 235 (968)
T PLN00113 162 SFSSLKVLDLGGNV-LVGKIPNS-LTNLTSLEFLTLASN-QLVGQI-PRELGQMKSLKWIYLGYN-NLSGEIPYEI-GGL 235 (968)
T ss_pred cCCCCCEEECccCc-ccccCChh-hhhCcCCCeeeccCC-CCcCcC-ChHHcCcCCccEEECcCC-ccCCcCChhH-hcC
Confidence 44566666666542 21111111 134556666666655 322211 111234556666666554 2222111122 235
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCC-----------------------CCCHHHHHHhhcCCCCCEE
Q 021374 192 QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALS-----------------------GFTDEAYKKISLLAHLKFL 248 (313)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-----------------------~~~~~~~~~l~~~~~L~~L 248 (313)
++|++|+++++ .+.. .++..+.++++|+.|+++++. .+.......+..+++|++|
T Consensus 236 ~~L~~L~L~~n-~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 313 (968)
T PLN00113 236 TSLNHLDLVYN-NLTG-PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEIL 313 (968)
T ss_pred CCCCEEECcCc-eecc-ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEE
Confidence 66666666663 2221 122223445555555555421 2222222233344455555
Q ss_pred ecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCc
Q 021374 249 DLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAE 304 (313)
Q Consensus 249 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 304 (313)
++++| .++......+..+++|+.|++++| .++......+ ..+++|+.|++++|
T Consensus 314 ~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~p~~l-~~~~~L~~L~Ls~n 366 (968)
T PLN00113 314 HLFSN-NFTGKIPVALTSLPRLQVLQLWSN-KFSGEIPKNL-GKHNNLTVLDLSTN 366 (968)
T ss_pred ECCCC-ccCCcCChhHhcCCCCCEEECcCC-CCcCcCChHH-hCCCCCcEEECCCC
Confidence 55544 333322333445555555555555 3332222222 24556666666655
No 12
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=5.7e-13 Score=110.02 Aligned_cols=185 Identities=18% Similarity=0.143 Sum_probs=88.8
Q ss_pred CCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhC
Q 021374 112 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY 191 (313)
Q Consensus 112 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 191 (313)
.+++++.|+|+..-......+..++..+|+|+.|+++.+. +....-...-...+.|+.|.++.| +++...+..+...+
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l~~lK~L~l~~C-Gls~k~V~~~~~~f 221 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLLSHLKQLVLNSC-GLSWKDVQWILLTF 221 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCccccchhhhhhhheEEeccC-CCCHHHHHHHHHhC
Confidence 3366666666653222333445555666666666666542 111000000112455666666665 45555555555556
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHh------h
Q 021374 192 QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACI------A 265 (313)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l------~ 265 (313)
|+|+.|.+.+...+...... ...+..|+.|++++...+........+.+|.|+.|.++.+ .+++-..... .
T Consensus 222 Psl~~L~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~ 298 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATS--TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTH 298 (505)
T ss_pred CcHHHhhhhcccccceecch--hhhhhHHhhccccCCcccccccccccccccchhhhhcccc-CcchhcCCCccchhhhc
Confidence 66666666653221111111 1223456666666654444444445556666666666665 3333211111 2
Q ss_pred CCCCCceeeccCCCCCChH-HHHHHHHhCCCccEeecCC
Q 021374 266 KCKNLVSLNLTWCVRITDV-GVMAIAEGCSSLEFLSSGA 303 (313)
Q Consensus 266 ~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~~L~~L~l~~ 303 (313)
.+++|++|++..| .+.+. .+..+. ..++|+.|.+..
T Consensus 299 ~f~kL~~L~i~~N-~I~~w~sl~~l~-~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 299 TFPKLEYLNISEN-NIRDWRSLNHLR-TLENLKHLRITL 335 (505)
T ss_pred ccccceeeecccC-ccccccccchhh-ccchhhhhhccc
Confidence 3566667766666 44332 232222 345555555443
No 13
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.26 E-value=7.7e-11 Score=95.01 Aligned_cols=204 Identities=24% Similarity=0.323 Sum_probs=119.6
Q ss_pred ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHH------------HhcCCCCcEEEecC
Q 021374 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII------------SSTCPELKVFSIYW 149 (313)
Q Consensus 82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------------~~~~~~L~~L~l~~ 149 (313)
.++.|+.++|+.+. +.......+... +.....|++|.|.+| .+...+-..+ ...-+.|+.+....
T Consensus 90 ~~~~L~~ldLSDNA-~G~~g~~~l~~l-l~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNA-FGPKGIRGLEEL-LSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred cCCceeEeeccccc-cCccchHHHHHH-HHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 45688888887643 433333322221 233477888888877 4443332221 12336777777776
Q ss_pred CcccCHHH---HHHHHhcCCCCcEEeccCCcccchHHHHHH---HHhCCCCcEEecCCCCCCCHHHH---HHHHhhCCCC
Q 021374 150 NVRVTDIG---IQHLVKNCKHIIDLNLSGCKNLLDKSLQLI---ADNYQELESLNLTRCVKLTDGGL---QKILIKCSSL 220 (313)
Q Consensus 150 ~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l---~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L 220 (313)
+ .+.+.+ +....+.+|.|+.+.+... .+...+...+ ..+||+|+.|++.+ +.++..+- ...+..+++|
T Consensus 167 N-rlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~LakaL~s~~~L 243 (382)
T KOG1909|consen 167 N-RLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKALSSWPHL 243 (382)
T ss_pred c-ccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHHHhcccchh
Confidence 6 444333 3444556678888887763 4444444222 33578888888877 45554332 2334456778
Q ss_pred CEEEeCCCCCCCHHHHHHhh-----cCCCCCEEecCCCCCCChHHHHHh----hCCCCCceeeccCCCCC--ChHHHHHH
Q 021374 221 RSLNLYALSGFTDEAYKKIS-----LLAHLKFLDLCGAQNLSDEGLACI----AKCKNLVSLNLTWCVRI--TDVGVMAI 289 (313)
Q Consensus 221 ~~L~l~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~--~~~~~~~l 289 (313)
+.|++++| .+.+.+..++. ..|+|+.|.+.+| .++.++...+ ...|.|+.|+|++| .+ .++++..+
T Consensus 244 ~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN-~l~e~de~i~ei 320 (382)
T KOG1909|consen 244 RELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGN-RLGEKDEGIDEI 320 (382)
T ss_pred eeeccccc-ccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcc-cccccchhHHHH
Confidence 88888886 34333333332 5778888888887 5666554333 24678888888887 56 66677777
Q ss_pred HHhCC
Q 021374 290 AEGCS 294 (313)
Q Consensus 290 ~~~~~ 294 (313)
...++
T Consensus 321 ~~~~~ 325 (382)
T KOG1909|consen 321 ASKFD 325 (382)
T ss_pred HHhcc
Confidence 66654
No 14
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.2e-12 Score=108.14 Aligned_cols=136 Identities=20% Similarity=0.194 Sum_probs=58.6
Q ss_pred cCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhC
Q 021374 138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKC 217 (313)
Q Consensus 138 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 217 (313)
.++.|+.|.+++| .++...+..+...+|+|+.|.+.+...+....... .-+..|+.|+|++. .+.+.........+
T Consensus 195 ~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N-~li~~~~~~~~~~l 270 (505)
T KOG3207|consen 195 LLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNN-NLIDFDQGYKVGTL 270 (505)
T ss_pred hhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecchh--hhhhHHhhccccCC-cccccccccccccc
Confidence 3455555555555 55555555555555555555555532111111110 11234555555553 22222222233455
Q ss_pred CCCCEEEeCCCCCCCH------HHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCC
Q 021374 218 SSLRSLNLYALSGFTD------EAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWC 278 (313)
Q Consensus 218 ~~L~~L~l~~~~~~~~------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 278 (313)
|.|+.|+++.+ ++.+ +.......+|+|++|++..|+......+..+...++|++|.+..+
T Consensus 271 ~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 271 PGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred cchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 55555555543 2211 111112345555555555553322223333444455555554433
No 15
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.23 E-value=3.4e-13 Score=115.31 Aligned_cols=163 Identities=20% Similarity=0.241 Sum_probs=99.7
Q ss_pred cCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhC
Q 021374 138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKC 217 (313)
Q Consensus 138 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 217 (313)
++..|+.|+++.+ .+....+... ..+++|+.|++++. .++.-.-..+. .+..|+.|+++. +.+.... ...+.++
T Consensus 291 gLt~L~~L~lS~N-aI~rih~d~W-sftqkL~~LdLs~N-~i~~l~~~sf~-~L~~Le~LnLs~-Nsi~~l~-e~af~~l 364 (873)
T KOG4194|consen 291 GLTSLEQLDLSYN-AIQRIHIDSW-SFTQKLKELDLSSN-RITRLDEGSFR-VLSQLEELNLSH-NSIDHLA-EGAFVGL 364 (873)
T ss_pred ccchhhhhccchh-hhheeecchh-hhcccceeEecccc-ccccCChhHHH-HHHHhhhhcccc-cchHHHH-hhHHHHh
Confidence 3455556666554 3332222222 24677777777763 33332222221 245677777777 4444321 1234567
Q ss_pred CCCCEEEeCCCCCC---CHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCC
Q 021374 218 SSLRSLNLYALSGF---TDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCS 294 (313)
Q Consensus 218 ~~L~~L~l~~~~~~---~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 294 (313)
.+|+.|+++.. .+ .++....+..+++|+.|.+.|| .+....-..+.+++.|++|+|.+| .+-......|. .+
T Consensus 365 ssL~~LdLr~N-~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~N-aiaSIq~nAFe-~m- 439 (873)
T KOG4194|consen 365 SSLHKLDLRSN-ELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDN-AIASIQPNAFE-PM- 439 (873)
T ss_pred hhhhhhcCcCC-eEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCC-cceeecccccc-cc-
Confidence 88888888763 32 1234455667889999999988 666666667888899999999887 55444444443 23
Q ss_pred CccEeecCCcccccccc
Q 021374 295 SLEFLSSGAEMNCCSCS 311 (313)
Q Consensus 295 ~L~~L~l~~~~~~~~~~ 311 (313)
+|++|.+.....-|.|+
T Consensus 440 ~Lk~Lv~nSssflCDCq 456 (873)
T KOG4194|consen 440 ELKELVMNSSSFLCDCQ 456 (873)
T ss_pred hhhhhhhcccceEEecc
Confidence 78888888888888886
No 16
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.16 E-value=4.2e-12 Score=108.78 Aligned_cols=44 Identities=18% Similarity=0.092 Sum_probs=21.9
Q ss_pred HHHHHccCCCcceeecccccccchhhHHHHhhccccCCcCeeeccCC
Q 021374 48 LHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFA 94 (313)
Q Consensus 48 w~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~ 94 (313)
|+......|..-+.+++++.....-.+.. +...++|+++++..+
T Consensus 69 ~~~l~g~lp~~t~~LdlsnNkl~~id~~~---f~nl~nLq~v~l~~N 112 (873)
T KOG4194|consen 69 KSRLKGFLPSQTQTLDLSNNKLSHIDFEF---FYNLPNLQEVNLNKN 112 (873)
T ss_pred ccccCCcCccceeeeeccccccccCcHHH---HhcCCcceeeeeccc
Confidence 34333344555556676665433222211 234577777776653
No 17
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=99.09 E-value=9e-10 Score=100.30 Aligned_cols=158 Identities=13% Similarity=0.152 Sum_probs=115.3
Q ss_pred CCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCC
Q 021374 140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSS 219 (313)
Q Consensus 140 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 219 (313)
.+|++|+++|...+.......+...+|+|++|.+.+- .+....+..+...+|+|.+||++++ .++.- .-.+++++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl---~GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT-NISNL---SGISRLKN 196 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCC-CccCc---HHHhcccc
Confidence 5788888888766666666777777899999999884 4555557778888899999999884 45542 22467788
Q ss_pred CCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHH-HH-Hhh---CCCCCceeeccCCCCCChHHHHHHHHhCC
Q 021374 220 LRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEG-LA-CIA---KCKNLVSLNLTWCVRITDVGVMAIAEGCS 294 (313)
Q Consensus 220 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~-~l~---~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 294 (313)
|+.|.+.+...-+-..+..+..+.+|+.||++......+.- +. .+. .+|+|+.||.++. .++.+.+..+....|
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT-di~~~~le~ll~sH~ 275 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT-DINEEILEELLNSHP 275 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc-chhHHHHHHHHHhCc
Confidence 88888887543344566777788999999998765444331 11 121 3789999999987 888888888888888
Q ss_pred CccEeecCC
Q 021374 295 SLEFLSSGA 303 (313)
Q Consensus 295 ~L~~L~l~~ 303 (313)
+|+.+..-+
T Consensus 276 ~L~~i~~~~ 284 (699)
T KOG3665|consen 276 NLQQIAALD 284 (699)
T ss_pred cHhhhhhhh
Confidence 888887654
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.04 E-value=6.9e-10 Score=108.16 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=19.2
Q ss_pred hhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCc
Q 021374 264 IAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAE 304 (313)
Q Consensus 264 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 304 (313)
+..+++|+.|++++|..+..... -...+++|+.+++++|
T Consensus 865 i~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 865 IEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDC 903 (1153)
T ss_pred HhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCC
Confidence 44556666666666655543221 1123445555555554
No 19
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=99.02 E-value=2e-09 Score=98.02 Aligned_cols=136 Identities=18% Similarity=0.220 Sum_probs=109.4
Q ss_pred CCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCC
Q 021374 166 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHL 245 (313)
Q Consensus 166 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 245 (313)
.+|++|+++|...+...+...+...+|+|++|.+.+ ..+..+.+..+..++|+|..|+++++ .+++ +..++.+++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~n--l~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGT-NISN--LSGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCC-CccC--cHHHhccccH
Confidence 589999999977777778888888999999999999 56666668888999999999999995 5655 4778899999
Q ss_pred CEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChH-HHHH---HHHhCCCccEeecCCcc
Q 021374 246 KFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDV-GVMA---IAEGCSSLEFLSSGAEM 305 (313)
Q Consensus 246 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~---l~~~~~~L~~L~l~~~~ 305 (313)
+.|.+.+-+..+...+..+.++++|+.||++.-....+. .+.. -...+|+|+.||.+++.
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 999998875555566788889999999999976554444 2222 23457999999998763
No 20
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.95 E-value=2.7e-09 Score=104.11 Aligned_cols=86 Identities=23% Similarity=0.364 Sum_probs=45.8
Q ss_pred CCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHh
Q 021374 111 GSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADN 190 (313)
Q Consensus 111 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~ 190 (313)
+.+++|+.|+++++..+...+ . ...+++|++|++.+|..+.. +...+..+++|+.|++++|..+.. ++... .
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip--~-ls~l~~Le~L~L~~c~~L~~--lp~si~~L~~L~~L~L~~c~~L~~--Lp~~i-~ 702 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIP--D-LSMATNLETLKLSDCSSLVE--LPSSIQYLNKLEDLDMSRCENLEI--LPTGI-N 702 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCC--c-cccCCcccEEEecCCCCccc--cchhhhccCCCCEEeCCCCCCcCc--cCCcC-C
Confidence 345677777777654332221 1 13467777777776644322 222234566777777777654433 11111 3
Q ss_pred CCCCcEEecCCCCC
Q 021374 191 YQELESLNLTRCVK 204 (313)
Q Consensus 191 ~~~L~~L~l~~~~~ 204 (313)
+++|+.|++++|..
T Consensus 703 l~sL~~L~Lsgc~~ 716 (1153)
T PLN03210 703 LKSLYRLNLSGCSR 716 (1153)
T ss_pred CCCCCEEeCCCCCC
Confidence 56666666666543
No 21
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.92 E-value=5.9e-10 Score=64.86 Aligned_cols=44 Identities=25% Similarity=0.333 Sum_probs=35.7
Q ss_pred CCchHHHHHHHcCCCccchhHHhhccHHHHHHHccCCCcceeecc
Q 021374 20 ETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDL 64 (313)
Q Consensus 20 ~~~peiL~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~~l~~ 64 (313)
.+|+|++.+||+||++.|+.+++.|||+|+.+. ..+.+|+.+.+
T Consensus 3 ~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~-~~~~lW~~~~~ 46 (47)
T PF12937_consen 3 SLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA-NDNSLWRRLCL 46 (47)
T ss_dssp CS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH-TCCCHHHHHC-
T ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-CChhhhhhhcc
Confidence 345589999999999999999999999999985 55599987654
No 22
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.82 E-value=1.6e-10 Score=100.25 Aligned_cols=131 Identities=23% Similarity=0.272 Sum_probs=69.6
Q ss_pred CCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCC
Q 021374 165 CKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAH 244 (313)
Q Consensus 165 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 244 (313)
.++|+.|++++. .++.-.. -...+.+|++|++++ +.++. ++..+-.+++|+.|.+.+..--.+..+..++++.+
T Consensus 244 l~~LrrLNLS~N-~iteL~~--~~~~W~~lEtLNlSr-NQLt~--LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~ 317 (1255)
T KOG0444|consen 244 LRNLRRLNLSGN-KITELNM--TEGEWENLETLNLSR-NQLTV--LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQ 317 (1255)
T ss_pred hhhhheeccCcC-ceeeeec--cHHHHhhhhhhcccc-chhcc--chHHHhhhHHHHHHHhccCcccccCCccchhhhhh
Confidence 456666666662 3443211 112245666666665 34432 23333344556666555421111222344555666
Q ss_pred CCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCccc
Q 021374 245 LKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMN 306 (313)
Q Consensus 245 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 306 (313)
|+.+...+| .+ .-....+++|++|+.|.|+.|..+|--....+ +|.|+.|++..|.+
T Consensus 318 Levf~aanN-~L-ElVPEglcRC~kL~kL~L~~NrLiTLPeaIHl---L~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 318 LEVFHAANN-KL-ELVPEGLCRCVKLQKLKLDHNRLITLPEAIHL---LPDLKVLDLRENPN 374 (1255)
T ss_pred hHHHHhhcc-cc-ccCchhhhhhHHHHHhcccccceeechhhhhh---cCCcceeeccCCcC
Confidence 666666555 22 22344577888888888887765653333333 47788888887753
No 23
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.81 E-value=1.8e-07 Score=73.59 Aligned_cols=212 Identities=18% Similarity=0.251 Sum_probs=139.9
Q ss_pred cCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHH----------HHHHHhcCCCCcEEEecCCcc
Q 021374 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKG----------IEIISSTCPELKVFSIYWNVR 152 (313)
Q Consensus 83 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~----------~~~~~~~~~~L~~L~l~~~~~ 152 (313)
...+++++++++ .+.......+... +.+-.+|+..+++.. ++... +....-.||.|++++|+.+ .
T Consensus 29 ~d~~~evdLSGN-tigtEA~e~l~~~-ia~~~~L~vvnfsd~--ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN-A 103 (388)
T COG5238 29 MDELVEVDLSGN-TIGTEAMEELCNV-IANVRNLRVVNFSDA--FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN-A 103 (388)
T ss_pred hcceeEEeccCC-cccHHHHHHHHHH-HhhhcceeEeehhhh--hhcccHHHHHHHHHHHHHHHhcCCcceeeecccc-c
Confidence 578899999996 4655555555433 455677888887753 22211 1222356899999999987 3
Q ss_pred cCHH---HHHHHHhcCCCCcEEeccCCcccchHHHHHHH------------HhCCCCcEEecCCCCCCCH---HHHHHHH
Q 021374 153 VTDI---GIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIA------------DNYQELESLNLTRCVKLTD---GGLQKIL 214 (313)
Q Consensus 153 ~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~------------~~~~~L~~L~l~~~~~~~~---~~~~~~~ 214 (313)
+... .+..++.+...|++|.+++| .++..+=..+. ..-|.|+.+..+. +.+.. ......+
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr-NRlengs~~~~a~~l 181 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR-NRLENGSKELSAALL 181 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc-chhccCcHHHHHHHH
Confidence 3332 34455667789999999987 44432222221 1248899999887 34332 2222334
Q ss_pred hhCCCCCEEEeCCCCCCCHHHHHH-----hhcCCCCCEEecCCCCCCChHHHHHh----hCCCCCceeeccCCCCCChHH
Q 021374 215 IKCSSLRSLNLYALSGFTDEAYKK-----ISLLAHLKFLDLCGAQNLSDEGLACI----AKCKNLVSLNLTWCVRITDVG 285 (313)
Q Consensus 215 ~~~~~L~~L~l~~~~~~~~~~~~~-----l~~~~~L~~L~l~~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~~~~ 285 (313)
....+|+.+.+.. +.+...+... +..+.+|+.|+|.+| .++-.+-..+ +..+.|+.|.+..| .++..+
T Consensus 182 ~sh~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~~lrEL~lnDC-lls~~G 258 (388)
T COG5238 182 ESHENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWNLLRELRLNDC-LLSNEG 258 (388)
T ss_pred HhhcCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccchhhhccccch-hhcccc
Confidence 4447899999987 4666654443 347899999999998 6766554444 35678999999999 888888
Q ss_pred HHHHHHhC-----CCccEeecCCc
Q 021374 286 VMAIAEGC-----SSLEFLSSGAE 304 (313)
Q Consensus 286 ~~~l~~~~-----~~L~~L~l~~~ 304 (313)
...+++.+ |+|+.|...+|
T Consensus 259 ~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 259 VKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred HHHHHHHhhhhcCCCccccccchh
Confidence 77776543 67777776665
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.67 E-value=8.4e-09 Score=77.66 Aligned_cols=126 Identities=21% Similarity=0.274 Sum_probs=31.6
Q ss_pred CCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCC
Q 021374 140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSS 219 (313)
Q Consensus 140 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 219 (313)
..+++|+|.++ .++. +..+...+.+|+.|+++++ .++. +..+. .+++|+.|++++ +.+..-+ ..+...+|+
T Consensus 19 ~~~~~L~L~~n-~I~~--Ie~L~~~l~~L~~L~Ls~N-~I~~--l~~l~-~L~~L~~L~L~~-N~I~~i~-~~l~~~lp~ 89 (175)
T PF14580_consen 19 VKLRELNLRGN-QIST--IENLGATLDKLEVLDLSNN-QITK--LEGLP-GLPRLKTLDLSN-NRISSIS-EGLDKNLPN 89 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS---S----TT-----TT--EEE--S-S---S-C-HHHHHH-TT
T ss_pred ccccccccccc-cccc--ccchhhhhcCCCEEECCCC-CCcc--ccCcc-ChhhhhhcccCC-CCCCccc-cchHHhCCc
Confidence 34566666665 4432 2222223456666666664 3332 22222 255666666665 3444311 112234566
Q ss_pred CCEEEeCCCCCCCH-HHHHHhhcCCCCCEEecCCCCCCChHH--HHHhhCCCCCceeec
Q 021374 220 LRSLNLYALSGFTD-EAYKKISLLAHLKFLDLCGAQNLSDEG--LACIAKCKNLVSLNL 275 (313)
Q Consensus 220 L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~L~~L~l 275 (313)
|+.|++++. .+.+ ..+..+..+|+|++|++.+|+...... ...+..+|+|+.||-
T Consensus 90 L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 90 LQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 666666552 2221 123344455566666665554221111 112334555555554
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.67 E-value=2e-09 Score=88.46 Aligned_cols=94 Identities=26% Similarity=0.162 Sum_probs=61.9
Q ss_pred HhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhC
Q 021374 214 LIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGC 293 (313)
Q Consensus 214 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 293 (313)
++.+++|+.|++++ ..++...-.++.....++.|.|..| .+....-..+.+...|++|+|.+| .|+-.....+- ..
T Consensus 270 f~~L~~L~~lnlsn-N~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~aF~-~~ 345 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSN-NKITRIEDGAFEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDN-QITTVAPGAFQ-TL 345 (498)
T ss_pred HhhcccceEeccCC-CccchhhhhhhcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCC-eeEEEeccccc-cc
Confidence 34566777777776 4555554555556666777777666 443333334556788889999887 66655444333 34
Q ss_pred CCccEeecCCcccccccc
Q 021374 294 SSLEFLSSGAEMNCCSCS 311 (313)
Q Consensus 294 ~~L~~L~l~~~~~~~~~~ 311 (313)
..|.+|.+-.|..+|+|.
T Consensus 346 ~~l~~l~l~~Np~~CnC~ 363 (498)
T KOG4237|consen 346 FSLSTLNLLSNPFNCNCR 363 (498)
T ss_pred ceeeeeehccCcccCccc
Confidence 578999999999999985
No 26
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.57 E-value=4.7e-09 Score=91.47 Aligned_cols=157 Identities=24% Similarity=0.266 Sum_probs=80.4
Q ss_pred hcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhh
Q 021374 137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIK 216 (313)
Q Consensus 137 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 216 (313)
.+.+++-.|+|+++ .+... ...++.++..|-.|+++.. .+. .++.-...+..|++|.+++ +.+....+.. +..
T Consensus 123 E~AKn~iVLNLS~N-~IetI-Pn~lfinLtDLLfLDLS~N-rLe--~LPPQ~RRL~~LqtL~Ls~-NPL~hfQLrQ-LPs 195 (1255)
T KOG0444|consen 123 EYAKNSIVLNLSYN-NIETI-PNSLFINLTDLLFLDLSNN-RLE--MLPPQIRRLSMLQTLKLSN-NPLNHFQLRQ-LPS 195 (1255)
T ss_pred hhhcCcEEEEcccC-ccccC-CchHHHhhHhHhhhccccc-hhh--hcCHHHHHHhhhhhhhcCC-ChhhHHHHhc-Ccc
Confidence 34455556666655 33221 2223334455556666552 221 1221222345667777766 3333222222 233
Q ss_pred CCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCc
Q 021374 217 CSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSL 296 (313)
Q Consensus 217 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 296 (313)
+++|+.|.+++....-+..+..+..+.+|..++++.| .++. ....+.+.++|+.|+|++| .++..... ...+.+|
T Consensus 196 mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~-vPecly~l~~LrrLNLS~N-~iteL~~~--~~~W~~l 270 (1255)
T KOG0444|consen 196 MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPI-VPECLYKLRNLRRLNLSGN-KITELNMT--EGEWENL 270 (1255)
T ss_pred chhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCc-chHHHhhhhhhheeccCcC-ceeeeecc--HHHHhhh
Confidence 4455566666543333333334445567777777776 4443 2445667788888888887 66554321 1135677
Q ss_pred cEeecCCcc
Q 021374 297 EFLSSGAEM 305 (313)
Q Consensus 297 ~~L~l~~~~ 305 (313)
+.|+++.|.
T Consensus 271 EtLNlSrNQ 279 (1255)
T KOG0444|consen 271 ETLNLSRNQ 279 (1255)
T ss_pred hhhccccch
Confidence 777777764
No 27
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=1.1e-07 Score=75.65 Aligned_cols=87 Identities=16% Similarity=0.065 Sum_probs=48.0
Q ss_pred CCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCce
Q 021374 193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVS 272 (313)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 272 (313)
.++++.+.+|.......+..+.+-+|++..+.+..++--+...-.....+|.+-.|.|+.+..-+...+..+.++++|..
T Consensus 174 ~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~d 253 (418)
T KOG2982|consen 174 EVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVD 253 (418)
T ss_pred hhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhhe
Confidence 33444444443222333444455667777777766543333333334456666677777663333445666777777777
Q ss_pred eeccCCC
Q 021374 273 LNLTWCV 279 (313)
Q Consensus 273 L~l~~~~ 279 (313)
|.+.+++
T Consensus 254 lRv~~~P 260 (418)
T KOG2982|consen 254 LRVSENP 260 (418)
T ss_pred eeccCCc
Confidence 7777763
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.47 E-value=4.6e-08 Score=73.69 Aligned_cols=127 Identities=21% Similarity=0.284 Sum_probs=50.8
Q ss_pred CCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHh-hcCC
Q 021374 165 CKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKI-SLLA 243 (313)
Q Consensus 165 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~ 243 (313)
+-++++|++.++ .++. +..+...+.+|+.|+++++ .+.. +.. +..+++|+.|++++ ..++... ..+ ..+|
T Consensus 18 ~~~~~~L~L~~n-~I~~--Ie~L~~~l~~L~~L~Ls~N-~I~~--l~~-l~~L~~L~~L~L~~-N~I~~i~-~~l~~~lp 88 (175)
T PF14580_consen 18 PVKLRELNLRGN-QIST--IENLGATLDKLEVLDLSNN-QITK--LEG-LPGLPRLKTLDLSN-NRISSIS-EGLDKNLP 88 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS---S----TT-----TT--EEE--S-S---S-C-HHHHHH-T
T ss_pred cccccccccccc-cccc--ccchhhhhcCCCEEECCCC-CCcc--ccC-ccChhhhhhcccCC-CCCCccc-cchHHhCC
Confidence 346899999995 4443 4445445789999999994 5654 222 45679999999998 4555432 223 3689
Q ss_pred CCCEEecCCCCCCCh-HHHHHhhCCCCCceeeccCCCCCChHH--HHHHHHhCCCccEeecC
Q 021374 244 HLKFLDLCGAQNLSD-EGLACIAKCKNLVSLNLTWCVRITDVG--VMAIAEGCSSLEFLSSG 302 (313)
Q Consensus 244 ~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~~L~~L~l~ 302 (313)
+|++|++++| .+.+ ..+..++.+++|+.|++.+|| +++.. -..+...+|+|+.||-.
T Consensus 89 ~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 89 NLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp T--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTE
T ss_pred cCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCE
Confidence 9999999999 5544 335567789999999999984 44332 34455689999999864
No 29
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=2.2e-07 Score=69.78 Aligned_cols=105 Identities=27% Similarity=0.410 Sum_probs=84.9
Q ss_pred CCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhh-cCCCCCEEecCCCCCCChHHHHHhhCCCCCc
Q 021374 193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKIS-LLAHLKFLDLCGAQNLSDEGLACIAKCKNLV 271 (313)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 271 (313)
.++.++-++ ..+...++.. +.+++.++.|.+.+|..+.+..+..++ -.++|+.|+|++|+.||+.++..+.++++|+
T Consensus 102 ~IeaVDAsd-s~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASD-SSIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred eEEEEecCC-chHHHHHHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 477888888 4777777776 588999999999999999999888887 5789999999999999999999999999999
Q ss_pred eeeccCCCCCChHH--HHHHHHhCCCccEe
Q 021374 272 SLNLTWCVRITDVG--VMAIAEGCSSLEFL 299 (313)
Q Consensus 272 ~L~l~~~~~~~~~~--~~~l~~~~~~L~~L 299 (313)
.|.+.+-+.+..-+ ...+-+.+|++...
T Consensus 180 ~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~ 209 (221)
T KOG3864|consen 180 RLHLYDLPYVANLELVQRQLEEALPKCDIV 209 (221)
T ss_pred HHHhcCchhhhchHHHHHHHHHhCccccee
Confidence 99998766655433 33444567776544
No 30
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=6.2e-07 Score=67.45 Aligned_cols=105 Identities=20% Similarity=0.261 Sum_probs=84.2
Q ss_pred CCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCC
Q 021374 167 HIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLK 246 (313)
Q Consensus 167 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 246 (313)
.++.++-+++ .+...++..+.. ++.|+.|.+.+|..+.+.++..+..-.++|+.|++++|+.+++.++..+..+++|+
T Consensus 102 ~IeaVDAsds-~I~~eGle~L~~-l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDS-SIMYEGLEHLRD-LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred eEEEEecCCc-hHHHHHHHHHhc-cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 4677888885 677778887765 89999999999999999999888777799999999999999999999999999999
Q ss_pred EEecCCCCCCChHHHHH--hh-CCCCCcee
Q 021374 247 FLDLCGAQNLSDEGLAC--IA-KCKNLVSL 273 (313)
Q Consensus 247 ~L~l~~~~~~~~~~~~~--l~-~~~~L~~L 273 (313)
.|.|.+-+.+...+... +. .+|+++..
T Consensus 180 ~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~ 209 (221)
T KOG3864|consen 180 RLHLYDLPYVANLELVQRQLEEALPKCDIV 209 (221)
T ss_pred HHHhcCchhhhchHHHHHHHHHhCccccee
Confidence 99998876665544332 22 35655443
No 31
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=3.3e-07 Score=73.03 Aligned_cols=194 Identities=17% Similarity=0.167 Sum_probs=96.1
Q ss_pred HHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCccc
Q 021374 100 RHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNL 179 (313)
Q Consensus 100 ~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 179 (313)
..+..+...+ +.++.++|.+...-..+.+..+.+.+|.|+.|+|+.+ .+... +..+.....+|+.|-+.|. .+
T Consensus 61 gd~~~~~~~~----~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~-I~~lp~p~~nl~~lVLNgT-~L 133 (418)
T KOG2982|consen 61 GDVMLFGSSV----TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSD-IKSLPLPLKNLRVLVLNGT-GL 133 (418)
T ss_pred hhHHHHHHHh----hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCCc-cccCcccccceEEEEEcCC-CC
Confidence 3444554433 6666677766544444556666666777777777655 22211 1111112346666666663 45
Q ss_pred chHHHHHHHHhCCCCcEEecCCCC----CCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhh-cCCCCCEEecCCCC
Q 021374 180 LDKSLQLIADNYQELESLNLTRCV----KLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKIS-LLAHLKFLDLCGAQ 254 (313)
Q Consensus 180 ~~~~l~~l~~~~~~L~~L~l~~~~----~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~ 254 (313)
.......+...+|.++.|.++..+ .+.+++... ..+.+++|.+..|....-.....++ -+|++..+.+..|+
T Consensus 134 ~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~---~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P 210 (418)
T KOG2982|consen 134 SWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED---WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP 210 (418)
T ss_pred Chhhhhhhhhcchhhhhhhhccchhhhhccccccccc---cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc
Confidence 555555555556666666665520 111111111 2334555555544211111111122 46666666666664
Q ss_pred CCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCc
Q 021374 255 NLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAE 304 (313)
Q Consensus 255 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 304 (313)
.-+...-.....+|.+.-|.++.+ ++.+.+-.+-...+|.|..|.+.++
T Consensus 211 lK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~ 259 (418)
T KOG2982|consen 211 LKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSEN 259 (418)
T ss_pred ccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCC
Confidence 443333333334566666666655 5554443333335666766666654
No 32
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.30 E-value=2.2e-05 Score=62.09 Aligned_cols=188 Identities=16% Similarity=0.167 Sum_probs=120.5
Q ss_pred CCCCCcEEecCCCCCCChHHHHHHHhcC---CCCcEEEecCC--cccCHHH------HHHHHhcCCCCcEEeccCCcccc
Q 021374 112 SLQDLESLNLNGCQKISDKGIEIISSTC---PELKVFSIYWN--VRVTDIG------IQHLVKNCKHIIDLNLSGCKNLL 180 (313)
Q Consensus 112 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~--~~~~~~~------~~~~~~~~~~L~~L~l~~~~~~~ 180 (313)
.+..+..++|++. .+.....+.++... .+|+..+++.- ....++. +......||+|+..+++.. .++
T Consensus 28 ~~d~~~evdLSGN-tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN-Afg 105 (388)
T COG5238 28 MMDELVEVDLSGN-TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN-AFG 105 (388)
T ss_pred hhcceeEEeccCC-cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc-ccC
Confidence 3578999999995 66766666665554 45555555432 1112221 2222346999999999974 333
Q ss_pred h---HHHHHHHHhCCCCcEEecCCCCCCCH---HHHH----H-----HHhhCCCCCEEEeCCCCCCCHHHHH----Hhhc
Q 021374 181 D---KSLQLIADNYQELESLNLTRCVKLTD---GGLQ----K-----ILIKCSSLRSLNLYALSGFTDEAYK----KISL 241 (313)
Q Consensus 181 ~---~~l~~l~~~~~~L~~L~l~~~~~~~~---~~~~----~-----~~~~~~~L~~L~l~~~~~~~~~~~~----~l~~ 241 (313)
. ..+..+.++..+|++|.+.+| .+.. .-+. . -...-|.|+.+..+. +++.+.... .+.+
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr-NRlengs~~~~a~~l~s 183 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR-NRLENGSKELSAALLES 183 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc-chhccCcHHHHHHHHHh
Confidence 3 334455566789999999985 4332 1111 1 123457899988876 344332222 2334
Q ss_pred CCCCCEEecCCCCCCChHHHHHh-----hCCCCCceeeccCCCCCChHHHHHHH---HhCCCccEeecCCcc
Q 021374 242 LAHLKFLDLCGAQNLSDEGLACI-----AKCKNLVSLNLTWCVRITDVGVMAIA---EGCSSLEFLSSGAEM 305 (313)
Q Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~ 305 (313)
-.+|+++.+..| .+...++..+ ..+.+|+.||+..| .+|-.+-..++ ..++.|++|.+..|.
T Consensus 184 h~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 184 HENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred hcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccchhhhccccchh
Confidence 469999999998 6766665554 35899999999998 77766644443 457789999998884
No 33
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.27 E-value=4.8e-08 Score=88.65 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=30.6
Q ss_pred HhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374 263 CIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM 305 (313)
Q Consensus 263 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 305 (313)
.+...++|+.+|++.| .++...+.... -.|+|+.|+++||.
T Consensus 447 e~~~l~qL~~lDlS~N-~L~~~~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 447 ELAQLPQLKVLDLSCN-NLSEVTLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhcCcceEEecccc-hhhhhhhhhhC-CCcccceeeccCCc
Confidence 3456789999999876 77666555444 24899999999986
No 34
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.25 E-value=8.3e-07 Score=49.85 Aligned_cols=38 Identities=16% Similarity=0.388 Sum_probs=32.9
Q ss_pred chHHHHHHHcCCCccchhHHhhccHHHHHHHccCCCcce
Q 021374 22 VPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWL 60 (313)
Q Consensus 22 ~peiL~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~ 60 (313)
|+|++..||.||+..|+.+++.||+.|+.++ ..+..|.
T Consensus 2 P~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~-~~~~~~~ 39 (41)
T smart00256 2 PDEILEEILSKLPPKDLLRLRKVSRRWRSLI-DSHDFWF 39 (41)
T ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-cChhhhh
Confidence 4589999999999999999999999999884 5566665
No 35
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.02 E-value=1e-06 Score=80.38 Aligned_cols=129 Identities=30% Similarity=0.317 Sum_probs=84.2
Q ss_pred CCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCC
Q 021374 141 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSL 220 (313)
Q Consensus 141 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 220 (313)
.|+.|.+.++ .+++..++.+ .+.++|+.|++++. .+.......+ ..++.|++|+++| +.++. ++.-+..++.|
T Consensus 360 ~Lq~LylanN-~Ltd~c~p~l-~~~~hLKVLhLsyN-rL~~fpas~~-~kle~LeeL~LSG-NkL~~--Lp~tva~~~~L 432 (1081)
T KOG0618|consen 360 ALQELYLANN-HLTDSCFPVL-VNFKHLKVLHLSYN-RLNSFPASKL-RKLEELEELNLSG-NKLTT--LPDTVANLGRL 432 (1081)
T ss_pred HHHHHHHhcC-cccccchhhh-ccccceeeeeeccc-ccccCCHHHH-hchHHhHHHhccc-chhhh--hhHHHHhhhhh
Confidence 3555666655 6666655554 46788899998884 3333222222 2367888888888 56654 23334567788
Q ss_pred CEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCC
Q 021374 221 RSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVR 280 (313)
Q Consensus 221 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 280 (313)
++|...+. .+. . +-.+..++.|+.+|++.| .++...+......++|++||+++|..
T Consensus 433 ~tL~ahsN-~l~-~-fPe~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 433 HTLRAHSN-QLL-S-FPELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred HHHhhcCC-cee-e-chhhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCcc
Confidence 88877652 222 1 225677899999999988 77766554444458999999999853
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.01 E-value=2e-06 Score=68.87 Aligned_cols=129 Identities=24% Similarity=0.210 Sum_probs=86.9
Q ss_pred cCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhC
Q 021374 138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKC 217 (313)
Q Consensus 138 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 217 (313)
.+..|++++|+++ .++. +....+-.|.++.|+++.. .+.. +..+ ..+++|+.|++++ +.++. ...+-..+
T Consensus 282 TWq~LtelDLS~N-~I~~--iDESvKL~Pkir~L~lS~N-~i~~--v~nL-a~L~~L~~LDLS~-N~Ls~--~~Gwh~KL 351 (490)
T KOG1259|consen 282 TWQELTELDLSGN-LITQ--IDESVKLAPKLRRLILSQN-RIRT--VQNL-AELPQLQLLDLSG-NLLAE--CVGWHLKL 351 (490)
T ss_pred hHhhhhhcccccc-chhh--hhhhhhhccceeEEecccc-ceee--ehhh-hhcccceEeeccc-chhHh--hhhhHhhh
Confidence 3457888999887 5543 2333345689999999984 4443 2222 3478999999998 44443 11122345
Q ss_pred CCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCC
Q 021374 218 SSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCV 279 (313)
Q Consensus 218 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 279 (313)
-+++.|.++.. .+ +.+..++++-+|.+|++.+|..-.-+.+..++++|-|+++.+.+|+
T Consensus 352 GNIKtL~La~N-~i--E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 352 GNIKTLKLAQN-KI--ETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred cCEeeeehhhh-hH--hhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 67888888762 22 3456667788999999999843334556778889999999999884
No 37
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.00 E-value=8.2e-07 Score=79.04 Aligned_cols=109 Identities=26% Similarity=0.285 Sum_probs=71.0
Q ss_pred CCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCC
Q 021374 191 YQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNL 270 (313)
Q Consensus 191 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 270 (313)
+|.|++|+|++ +++.+- . .+..+++|++|++++. .+.-..-.....+ .|+.|.+++| .++ .+..+.++.+|
T Consensus 186 l~ale~LnLsh-Nk~~~v--~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~lrnN-~l~--tL~gie~LksL 256 (1096)
T KOG1859|consen 186 LPALESLNLSH-NKFTKV--D-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNLRNN-ALT--TLRGIENLKSL 256 (1096)
T ss_pred HHHhhhhccch-hhhhhh--H-HHHhcccccccccccc-hhccccccchhhh-hheeeeeccc-HHH--hhhhHHhhhhh
Confidence 57788999988 555542 2 4577899999999873 2221111111233 4888888888 443 24556778889
Q ss_pred ceeeccCCCCCChHHHHHHHHhCCCccEeecCCcccccc
Q 021374 271 VSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCS 309 (313)
Q Consensus 271 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 309 (313)
+.||+++| .+.+..-....-.+..|+.|.|.||.=||.
T Consensus 257 ~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 257 YGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred hccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 99999987 555544333333456788889988887774
No 38
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=97.98 E-value=4.8e-06 Score=48.54 Aligned_cols=38 Identities=24% Similarity=0.466 Sum_probs=29.1
Q ss_pred CchHHHHHHHcCCCccchhHHhhccHHHHHHHccCCCcc
Q 021374 21 TVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLW 59 (313)
Q Consensus 21 ~~peiL~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~ 59 (313)
+++|++.+||+||+..|+..++.||++|++++ ..+..|
T Consensus 6 LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~-~~~~~~ 43 (48)
T PF00646_consen 6 LPDEILQEILSYLDPKDLLRLSLVSKRWRSLV-DSPRLW 43 (48)
T ss_dssp S-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHH-TTHHHH
T ss_pred CCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHH-cCCCcc
Confidence 44489999999999999999999999999985 433333
No 39
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.98 E-value=1.1e-06 Score=72.76 Aligned_cols=65 Identities=22% Similarity=0.196 Sum_probs=51.0
Q ss_pred HhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374 238 KISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM 305 (313)
Q Consensus 238 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 305 (313)
.+..+|+|++|++++| .++...-..+.+...+++|.|..| .+... -..++++..+|+.|+|++|.
T Consensus 269 cf~~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v-~~~~f~~ls~L~tL~L~~N~ 333 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTRN-KLEFV-SSGMFQGLSGLKTLSLYDNQ 333 (498)
T ss_pred HHhhcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCcc-hHHHH-HHHhhhccccceeeeecCCe
Confidence 3567899999999998 888776677888899999999988 44322 23345678899999999885
No 40
>PLN03150 hypothetical protein; Provisional
Probab=97.96 E-value=1.7e-05 Score=72.74 Aligned_cols=112 Identities=16% Similarity=0.143 Sum_probs=78.4
Q ss_pred CCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCce
Q 021374 193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVS 272 (313)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 272 (313)
.++.|+|.++ .+.. .+..-+..+++|+.|+++++ .+.......++.+++|+.|+|++| .++......++++++|++
T Consensus 419 ~v~~L~L~~n-~L~g-~ip~~i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 419 FIDGLGLDNQ-GLRG-FIPNDISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEEECCCC-Cccc-cCCHHHhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCE
Confidence 3677888773 4433 23334577899999999884 555555556788899999999998 676666667888999999
Q ss_pred eeccCCCCCChHHHHHHHHhCCCccEeecCCcccccc
Q 021374 273 LNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCS 309 (313)
Q Consensus 273 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 309 (313)
|++++| .++......+.....++..+++.+|..-|.
T Consensus 495 L~Ls~N-~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 495 LNLNGN-SLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred EECcCC-cccccCChHHhhccccCceEEecCCccccC
Confidence 999988 566554444443345677888887754443
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.95 E-value=1.5e-06 Score=69.51 Aligned_cols=125 Identities=22% Similarity=0.269 Sum_probs=74.6
Q ss_pred CCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhh-cCCC
Q 021374 166 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKIS-LLAH 244 (313)
Q Consensus 166 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~ 244 (313)
..|+++++++. .++. +..-.+-.|.++.|++++ +.+.. +.. +..+++|+.|++++. .++. ..... ++-+
T Consensus 284 q~LtelDLS~N-~I~~--iDESvKL~Pkir~L~lS~-N~i~~--v~n-La~L~~L~~LDLS~N-~Ls~--~~Gwh~KLGN 353 (490)
T KOG1259|consen 284 QELTELDLSGN-LITQ--IDESVKLAPKLRRLILSQ-NRIRT--VQN-LAELPQLQLLDLSGN-LLAE--CVGWHLKLGN 353 (490)
T ss_pred hhhhhcccccc-chhh--hhhhhhhccceeEEeccc-cceee--ehh-hhhcccceEeecccc-hhHh--hhhhHhhhcC
Confidence 45677777763 3322 222233357777777777 44443 222 455677778877762 2221 12221 4567
Q ss_pred CCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCCh-HHHHHHHHhCCCccEeecCCcc
Q 021374 245 LKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITD-VGVMAIAEGCSSLEFLSSGAEM 305 (313)
Q Consensus 245 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~ 305 (313)
+++|.+.+| .+. .+..+.++-+|..||+++| .+.. +.+..+. .+|.|+.+.+.+|.
T Consensus 354 IKtL~La~N-~iE--~LSGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG-~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 354 IKTLKLAQN-KIE--TLSGLRKLYSLVNLDLSSN-QIEELDEVNHIG-NLPCLETLRLTGNP 410 (490)
T ss_pred Eeeeehhhh-hHh--hhhhhHhhhhheecccccc-chhhHHHhcccc-cccHHHHHhhcCCC
Confidence 777777776 332 2344566788999999988 5543 4455454 68889888887774
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.92 E-value=8e-06 Score=76.99 Aligned_cols=134 Identities=23% Similarity=0.209 Sum_probs=73.9
Q ss_pred cCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHH
Q 021374 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV 162 (313)
Q Consensus 83 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 162 (313)
++.++.|-+..+.. .+..+...++..++.|+.|++++|.... .++...+.+-+|++|+++++ .+. .++.-.
T Consensus 544 ~~~L~tLll~~n~~----~l~~is~~ff~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~t-~I~--~LP~~l 614 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSD----WLLEISGEFFRSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSDT-GIS--HLPSGL 614 (889)
T ss_pred CCccceEEEeecch----hhhhcCHHHHhhCcceEEEECCCCCccC--cCChHHhhhhhhhcccccCC-Ccc--ccchHH
Confidence 34455555544321 2333334445677899999998753322 22233356678888888877 554 233334
Q ss_pred hcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCC
Q 021374 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYA 227 (313)
Q Consensus 163 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 227 (313)
..++.|.+|++........ ...+...+++|++|.+.......+.....-+.++.+|+.+.+..
T Consensus 615 ~~Lk~L~~Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 615 GNLKKLIYLNLEVTGRLES--IPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred HHHHhhheecccccccccc--ccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 5567788888876543322 23344447888888887632112212222235556666666543
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.86 E-value=1.9e-06 Score=53.13 Aligned_cols=39 Identities=31% Similarity=0.309 Sum_probs=16.8
Q ss_pred hhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCC
Q 021374 239 ISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWC 278 (313)
Q Consensus 239 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 278 (313)
+..+++|++|++++| .++.-....+.++++|++|++++|
T Consensus 21 f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 21 FSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred HcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 334444444444444 333322223444444555554444
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.86 E-value=1.4e-06 Score=53.83 Aligned_cols=60 Identities=20% Similarity=0.248 Sum_probs=47.5
Q ss_pred CCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374 243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM 305 (313)
Q Consensus 243 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 305 (313)
|+|++|++++| .++.-....+.++++|++|++++| .++..... .+.++++|+.|++++|.
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~-~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPD-AFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEETT-TTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHH-HHcCCCCCCEEeCcCCc
Confidence 68999999998 777655456778999999999988 77644333 35589999999999874
No 45
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.79 E-value=2.4e-05 Score=72.52 Aligned_cols=14 Identities=14% Similarity=-0.111 Sum_probs=9.2
Q ss_pred hCCCccEeecCCcc
Q 021374 292 GCSSLEFLSSGAEM 305 (313)
Q Consensus 292 ~~~~L~~L~l~~~~ 305 (313)
.+++|+.|++++|.
T Consensus 443 ~L~~L~~LdLs~N~ 456 (788)
T PRK15387 443 HLSSETTVNLEGNP 456 (788)
T ss_pred hccCCCeEECCCCC
Confidence 45667777776664
No 46
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.66 E-value=1.8e-07 Score=68.51 Aligned_cols=37 Identities=27% Similarity=0.227 Sum_probs=16.2
Q ss_pred hhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCC
Q 021374 215 IKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGA 253 (313)
Q Consensus 215 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 253 (313)
+.+++|+.|.+....-+ ..+..++.+..|+.|.+.+|
T Consensus 147 g~lt~lqil~lrdndll--~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 147 GKLTNLQILSLRDNDLL--SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhcceeEEeeccCchh--hCcHHHHHHHHHHHHhcccc
Confidence 34455555555442111 11233444445555555555
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.65 E-value=4.5e-06 Score=74.52 Aligned_cols=107 Identities=21% Similarity=0.157 Sum_probs=68.2
Q ss_pred hcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcC
Q 021374 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL 242 (313)
Q Consensus 163 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 242 (313)
+-++.|+.|+++.. .+++ ...+ ..|+.|++|+|++ +.+.. ++.+...--+|+.|.+.+. .+ ..+..+.++
T Consensus 184 qll~ale~LnLshN-k~~~--v~~L-r~l~~LkhLDlsy-N~L~~--vp~l~~~gc~L~~L~lrnN-~l--~tL~gie~L 253 (1096)
T KOG1859|consen 184 QLLPALESLNLSHN-KFTK--VDNL-RRLPKLKHLDLSY-NCLRH--VPQLSMVGCKLQLLNLRNN-AL--TTLRGIENL 253 (1096)
T ss_pred HHHHHhhhhccchh-hhhh--hHHH-Hhccccccccccc-chhcc--ccccchhhhhheeeeeccc-HH--HhhhhHHhh
Confidence 44578888899884 4444 3333 3488999999988 44432 2222111123888888773 22 346667788
Q ss_pred CCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCC
Q 021374 243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCV 279 (313)
Q Consensus 243 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 279 (313)
.+|+.|++++|-......+..+..+..|+.|.|.+|+
T Consensus 254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 8999999988833333445555666778888888874
No 48
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.56 E-value=0.00011 Score=68.35 Aligned_cols=32 Identities=22% Similarity=0.090 Sum_probs=19.7
Q ss_pred CCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374 268 KNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM 305 (313)
Q Consensus 268 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 305 (313)
.+|+.|++++| .++... ...++|+.|++++|.
T Consensus 382 ~~L~~LdLs~N-~Lt~LP-----~l~s~L~~LdLS~N~ 413 (788)
T PRK15387 382 SGLKELIVSGN-RLTSLP-----VLPSELKELMVSGNR 413 (788)
T ss_pred cccceEEecCC-cccCCC-----CcccCCCEEEccCCc
Confidence 46788888777 454211 123567788877764
No 49
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.55 E-value=0.00011 Score=68.31 Aligned_cols=32 Identities=13% Similarity=0.231 Sum_probs=15.8
Q ss_pred CCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCC
Q 021374 243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWC 278 (313)
Q Consensus 243 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 278 (313)
++|+.|++++| .++.. ...+ .++|++|++++|
T Consensus 346 ~sL~~L~Ls~N-~L~~L-P~~l--p~~L~~LdLs~N 377 (754)
T PRK15370 346 PELQVLDVSKN-QITVL-PETL--PPTITTLDVSRN 377 (754)
T ss_pred CcccEEECCCC-CCCcC-Chhh--cCCcCEEECCCC
Confidence 45666666665 33321 1111 245666666665
No 50
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=4.1e-05 Score=60.84 Aligned_cols=114 Identities=25% Similarity=0.300 Sum_probs=68.2
Q ss_pred CCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCC
Q 021374 166 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHL 245 (313)
Q Consensus 166 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 245 (313)
.+.++|+.-|| .++|.. +...+|.|+.|.|+- +.++. +.. +..|++|++|++.....-.-..+.++.++|+|
T Consensus 19 ~~vkKLNcwg~-~L~DIs---ic~kMp~lEVLsLSv-NkIss--L~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDIS---ICEKMPLLEVLSLSV-NKISS--LAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHhhhhcccCC-CccHHH---HHHhcccceeEEeec-ccccc--chh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 45677777776 465543 334578888888876 45553 222 46778888888866322233445666778888
Q ss_pred CEEecCCCCCCChHHHH----HhhCCCCCceeeccCCCCCChHHHHHHH
Q 021374 246 KFLDLCGAQNLSDEGLA----CIAKCKNLVSLNLTWCVRITDVGVMAIA 290 (313)
Q Consensus 246 ~~L~l~~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~~l~ 290 (313)
++|+|..|+.....+-. .+.-+|+|+.|| +..++.+.+..-.
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD---nv~VteeEle~AL 136 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD---NVPVTEEELEEAL 136 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc---CccccHHHHHHHH
Confidence 88888777655443321 133467777775 2356665554433
No 51
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.37 E-value=0.00033 Score=65.26 Aligned_cols=100 Identities=12% Similarity=0.056 Sum_probs=54.0
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCc
Q 021374 192 QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLV 271 (313)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 271 (313)
++|+.|++++| .++. ++. .-.++|+.|+++++ .+.. ....+ .++|++|++++| .++.- ...+. ..|+
T Consensus 325 ~sL~~L~Ls~N-~Lt~--LP~--~l~~sL~~L~Ls~N-~L~~-LP~~l--p~~L~~LdLs~N-~Lt~L-P~~l~--~sL~ 391 (754)
T PRK15370 325 PGLKTLEAGEN-ALTS--LPA--SLPPELQVLDVSKN-QITV-LPETL--PPTITTLDVSRN-ALTNL-PENLP--AALQ 391 (754)
T ss_pred ccceeccccCC-cccc--CCh--hhcCcccEEECCCC-CCCc-CChhh--cCCcCEEECCCC-cCCCC-CHhHH--HHHH
Confidence 46777777664 3332 111 11357888888774 3331 11112 257888888887 44431 11121 2567
Q ss_pred eeeccCCCCCCh--HHHHHHHHhCCCccEeecCCcc
Q 021374 272 SLNLTWCVRITD--VGVMAIAEGCSSLEFLSSGAEM 305 (313)
Q Consensus 272 ~L~l~~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~ 305 (313)
.|++++| .++. ..+..+...+|++..|++.+|.
T Consensus 392 ~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 392 IMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 7777776 4432 2344444455677777777664
No 52
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.28 E-value=0.00036 Score=34.48 Aligned_cols=24 Identities=50% Similarity=0.843 Sum_probs=17.1
Q ss_pred CCCCceeeccCCCCCChHHHHHHH
Q 021374 267 CKNLVSLNLTWCVRITDVGVMAIA 290 (313)
Q Consensus 267 ~~~L~~L~l~~~~~~~~~~~~~l~ 290 (313)
|++|++|+|++|+.++|.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 467777777777777777776665
No 53
>PLN03150 hypothetical protein; Provisional
Probab=97.25 E-value=0.00039 Score=64.00 Aligned_cols=83 Identities=19% Similarity=0.243 Sum_probs=65.0
Q ss_pred CCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccE
Q 021374 219 SLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEF 298 (313)
Q Consensus 219 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 298 (313)
.++.|+++++ .+.......+..+++|+.|+|++| .++......+..+++|+.|++++| .++......+. .+++|+.
T Consensus 419 ~v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~-~L~~L~~ 494 (623)
T PLN03150 419 FIDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYN-SFNGSIPESLG-QLTSLRI 494 (623)
T ss_pred EEEEEECCCC-CccccCCHHHhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCC-CCCCCCchHHh-cCCCCCE
Confidence 3778888873 555555667888999999999999 666555556888999999999998 77655444444 6899999
Q ss_pred eecCCcc
Q 021374 299 LSSGAEM 305 (313)
Q Consensus 299 L~l~~~~ 305 (313)
|++++|.
T Consensus 495 L~Ls~N~ 501 (623)
T PLN03150 495 LNLNGNS 501 (623)
T ss_pred EECcCCc
Confidence 9999885
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.24 E-value=0.00055 Score=38.72 Aligned_cols=38 Identities=32% Similarity=0.394 Sum_probs=23.3
Q ss_pred CCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCCh
Q 021374 243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITD 283 (313)
Q Consensus 243 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 283 (313)
++|++|++++| .+++-. ..++++++|++|++++| .+++
T Consensus 1 ~~L~~L~l~~N-~i~~l~-~~l~~l~~L~~L~l~~N-~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLP-PELSNLPNLETLNLSNN-PISD 38 (44)
T ss_dssp TT-SEEEETSS-S-SSHG-GHGTTCTTSSEEEETSS-CCSB
T ss_pred CcceEEEccCC-CCcccC-chHhCCCCCCEEEecCC-CCCC
Confidence 46777777777 565432 23677777777777777 5543
No 55
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.20 E-value=7.8e-05 Score=65.67 Aligned_cols=210 Identities=27% Similarity=0.431 Sum_probs=120.1
Q ss_pred cCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCC----CCcEEEecCCcccCHHHHHHH
Q 021374 86 VREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP----ELKVFSIYWNVRVTDIGIQHL 161 (313)
Q Consensus 86 l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~~~~~~~~~ 161 (313)
+..+.+.++ .+.+.....+... ....+.|+.|+++++ .+.+.+...+....+ .|++|.+..| .++.++...+
T Consensus 89 l~~L~L~~~-~l~~~~~~~l~~~-l~t~~~L~~L~l~~n-~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l 164 (478)
T KOG4308|consen 89 LLHLSLANN-RLGDRGAEELAQA-LKTLPTLGQLDLSGN-NLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPL 164 (478)
T ss_pred HHHhhhhhC-ccccchHHHHHHH-hcccccHhHhhcccC-CCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHH
Confidence 566666665 3444455544443 456677888888885 566666666655543 3566677766 6666654443
Q ss_pred Hh---cCCCCcEEeccCCcccchHHHHHHHH-------hCCCCcEEecCCCCCCCHHHHHH---HHhhCCC-CCEEEeCC
Q 021374 162 VK---NCKHIIDLNLSGCKNLLDKSLQLIAD-------NYQELESLNLTRCVKLTDGGLQK---ILIKCSS-LRSLNLYA 227 (313)
Q Consensus 162 ~~---~~~~L~~L~l~~~~~~~~~~l~~l~~-------~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~~-L~~L~l~~ 227 (313)
.. ....++.++++.+. +.+.+...+.. ...++++|++.+| .++...... .+...++ +..|++..
T Consensus 165 ~~~L~~~~~l~~l~l~~n~-l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~ 242 (478)
T KOG4308|consen 165 AAVLEKNEHLTELDLSLNG-LIELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLAS 242 (478)
T ss_pred HHHHhcccchhHHHHHhcc-cchhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHh
Confidence 33 24566777777653 33333332222 2346778888886 444433332 2333344 55677766
Q ss_pred CCCCCHHHHHHhh----cC-CCCCEEecCCCCCCChHHHHHhh----CCCCCceeeccCCCCCChHHHHHHHHhC---CC
Q 021374 228 LSGFTDEAYKKIS----LL-AHLKFLDLCGAQNLSDEGLACIA----KCKNLVSLNLTWCVRITDVGVMAIAEGC---SS 295 (313)
Q Consensus 228 ~~~~~~~~~~~l~----~~-~~L~~L~l~~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~~~~~~~~~l~~~~---~~ 295 (313)
..+.+.++..+. .. +.+++++++.| .+++.+...+. .++.++++.+.++ .+++.+...+.+.. ..
T Consensus 243 -n~l~d~g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n-~l~~~~~~~~~~~l~~~~~ 319 (478)
T KOG4308|consen 243 -NKLGDVGVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNN-PLTDYGVELLLEALERKTP 319 (478)
T ss_pred -cCcchHHHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccC-ccccHHHHHHHHHhhhccc
Confidence 455555555443 33 56788888888 56665544443 5778888888776 77777665554432 24
Q ss_pred ccEeecCCc
Q 021374 296 LEFLSSGAE 304 (313)
Q Consensus 296 L~~L~l~~~ 304 (313)
+..+.+.++
T Consensus 320 ~~~~~l~~~ 328 (478)
T KOG4308|consen 320 LLHLVLGGT 328 (478)
T ss_pred chhhhcccc
Confidence 444444433
No 56
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.05 E-value=0.00034 Score=61.75 Aligned_cols=13 Identities=23% Similarity=0.181 Sum_probs=6.7
Q ss_pred cCCCCCEEecCCC
Q 021374 241 LLAHLKFLDLCGA 253 (313)
Q Consensus 241 ~~~~L~~L~l~~~ 253 (313)
.++.++.+.++.|
T Consensus 288 ~~~~l~~l~l~~n 300 (478)
T KOG4308|consen 288 SCRQLEELSLSNN 300 (478)
T ss_pred hhHHHHHhhcccC
Confidence 4445555555554
No 57
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.04 E-value=0.00093 Score=63.46 Aligned_cols=60 Identities=25% Similarity=0.222 Sum_probs=26.5
Q ss_pred hcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCC
Q 021374 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYA 227 (313)
Q Consensus 163 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 227 (313)
..+|.|+.|++++|..++. ++.....+-+|+.|++++ ..+. .++.-+.++..|.+|++..
T Consensus 568 ~~m~~LrVLDLs~~~~l~~--LP~~I~~Li~LryL~L~~-t~I~--~LP~~l~~Lk~L~~Lnl~~ 627 (889)
T KOG4658|consen 568 RSLPLLRVLDLSGNSSLSK--LPSSIGELVHLRYLDLSD-TGIS--HLPSGLGNLKKLIYLNLEV 627 (889)
T ss_pred hhCcceEEEECCCCCccCc--CChHHhhhhhhhcccccC-CCcc--ccchHHHHHHhhheecccc
Confidence 3455555555555433222 333333344555555555 2333 1222234444455555544
No 58
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.87 E-value=0.001 Score=57.97 Aligned_cols=146 Identities=26% Similarity=0.315 Sum_probs=63.1
Q ss_pred CCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCC
Q 021374 141 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSL 220 (313)
Q Consensus 141 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 220 (313)
+|+.|+++++ .+... ..-...+++|+.|+++++ .+.+ +.......++|+.|++++ +.+.+ ++.......+|
T Consensus 141 nL~~L~l~~N-~i~~l--~~~~~~l~~L~~L~l~~N-~l~~--l~~~~~~~~~L~~L~ls~-N~i~~--l~~~~~~~~~L 211 (394)
T COG4886 141 NLKELDLSDN-KIESL--PSPLRNLPNLKNLDLSFN-DLSD--LPKLLSNLSNLNNLDLSG-NKISD--LPPEIELLSAL 211 (394)
T ss_pred hccccccccc-chhhh--hhhhhccccccccccCCc-hhhh--hhhhhhhhhhhhheeccC-Ccccc--Cchhhhhhhhh
Confidence 6666666655 33321 111234666666666664 3333 222221356666666666 34433 22211233345
Q ss_pred CEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEee
Q 021374 221 RSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLS 300 (313)
Q Consensus 221 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~ 300 (313)
+.|.+++...+ ..+..+..+.++..+.+.++ .+.+. ...++..+++++|+++++ .+++... .....+++.|+
T Consensus 212 ~~l~~~~N~~~--~~~~~~~~~~~l~~l~l~~n-~~~~~-~~~~~~l~~l~~L~~s~n-~i~~i~~---~~~~~~l~~L~ 283 (394)
T COG4886 212 EELDLSNNSII--ELLSSLSNLKNLSGLELSNN-KLEDL-PESIGNLSNLETLDLSNN-QISSISS---LGSLTNLRELD 283 (394)
T ss_pred hhhhhcCCcce--ecchhhhhcccccccccCCc-eeeec-cchhccccccceeccccc-ccccccc---ccccCccCEEe
Confidence 55555552111 11222334444444444444 22210 122344455555555554 3333222 22334555555
Q ss_pred cCC
Q 021374 301 SGA 303 (313)
Q Consensus 301 l~~ 303 (313)
+++
T Consensus 284 ~s~ 286 (394)
T COG4886 284 LSG 286 (394)
T ss_pred ccC
Confidence 544
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.0004 Score=55.42 Aligned_cols=110 Identities=23% Similarity=0.219 Sum_probs=70.2
Q ss_pred CCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCC
Q 021374 140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSS 219 (313)
Q Consensus 140 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 219 (313)
.+.++|+.-|| .+++..+ +..+|.|+.|.|+-. .++. +..+. .|.+|++|.|.. +.+.+..=...+.++|+
T Consensus 19 ~~vkKLNcwg~-~L~DIsi---c~kMp~lEVLsLSvN-kIss--L~pl~-rCtrLkElYLRk-N~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDISI---CEKMPLLEVLSLSVN-KISS--LAPLQ-RCTRLKELYLRK-NCIESLDELEYLKNLPS 89 (388)
T ss_pred HHhhhhcccCC-CccHHHH---HHhcccceeEEeecc-cccc--chhHH-HHHHHHHHHHHh-cccccHHHHHHHhcCch
Confidence 45677887777 7777654 456888888888873 4433 33333 378888888887 56666444455788888
Q ss_pred CCEEEeCCCCCC----CHHHHHHhhcCCCCCEEecCCCCCCChHHH
Q 021374 220 LRSLNLYALSGF----TDEAYKKISLLAHLKFLDLCGAQNLSDEGL 261 (313)
Q Consensus 220 L~~L~l~~~~~~----~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 261 (313)
|+.|.+...+=. .+.-...+..+|+|+.|+ |..++...+
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD---nv~VteeEl 132 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD---NVPVTEEEL 132 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc---CccccHHHH
Confidence 888888652211 112233455788888875 345665543
No 60
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.77 E-value=0.0007 Score=56.86 Aligned_cols=40 Identities=23% Similarity=0.205 Sum_probs=26.6
Q ss_pred HhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCC
Q 021374 238 KISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCV 279 (313)
Q Consensus 238 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 279 (313)
.+.++.+|.+|++.+| .+.. ....++++++|++|++.+++
T Consensus 500 ~l~nm~nL~tLDL~nN-dlq~-IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 500 GLKNMRNLTTLDLQNN-DLQQ-IPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred HhhhhhhcceeccCCC-chhh-CChhhccccceeEEEecCCc
Confidence 4456677888888777 3322 34456778888888888773
No 61
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.64 E-value=0.0029 Score=31.17 Aligned_cols=24 Identities=46% Similarity=0.767 Sum_probs=16.3
Q ss_pred CCCCCEEecCCCCCCChHHHHHhh
Q 021374 242 LAHLKFLDLCGAQNLSDEGLACIA 265 (313)
Q Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~l~ 265 (313)
+++|++|+|++|..++|.++..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 456777777777777777666554
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.63 E-value=0.00065 Score=53.63 Aligned_cols=84 Identities=31% Similarity=0.383 Sum_probs=42.0
Q ss_pred CCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCH-HHHHHHHhhCCCCCEEEeCCCCCC--CHHHHHHhhc
Q 021374 165 CKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTD-GGLQKILIKCSSLRSLNLYALSGF--TDEAYKKISL 241 (313)
Q Consensus 165 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~l~~ 241 (313)
+|+|++|.++....-....+..+...+|+|+++++++ +.+.+ ..+.. +..+++|..|++.+|... .+.--..+.-
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~p-l~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRP-LKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccch-hhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 5667777776642222334555555567777777776 44443 11111 344556666666655322 2222222334
Q ss_pred CCCCCEEec
Q 021374 242 LAHLKFLDL 250 (313)
Q Consensus 242 ~~~L~~L~l 250 (313)
+|+|++|+-
T Consensus 142 l~~L~~LD~ 150 (260)
T KOG2739|consen 142 LPSLKYLDG 150 (260)
T ss_pred hhhhccccc
Confidence 555555543
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.58 E-value=0.0031 Score=54.05 Aligned_cols=135 Identities=19% Similarity=0.238 Sum_probs=74.9
Q ss_pred CCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhC
Q 021374 112 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY 191 (313)
Q Consensus 112 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 191 (313)
.+.+++.|++++| .+...+ .--++|++|.+.+|..++. +.... .++|++|.+.+|..+.. + .
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP-----~LP~sLtsL~Lsnc~nLts--LP~~L--P~nLe~L~Ls~Cs~L~s-----L---P 111 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLP-----VLPNELTEITIENCNNLTT--LPGSI--PEGLEKLTVCHCPEISG-----L---P 111 (426)
T ss_pred HhcCCCEEEeCCC-CCcccC-----CCCCCCcEEEccCCCCccc--CCchh--hhhhhheEccCcccccc-----c---c
Confidence 4478889999887 433322 1224688898887755422 11111 25788888888754431 1 3
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhhC-CCCCEEEeCCCCCCCHHHHHHhh-cC-CCCCEEecCCCCCCChHHHHHhhCCC
Q 021374 192 QELESLNLTRCVKLTDGGLQKILIKC-SSLRSLNLYALSGFTDEAYKKIS-LL-AHLKFLDLCGAQNLSDEGLACIAKCK 268 (313)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~-~~-~~L~~L~l~~~~~~~~~~~~~l~~~~ 268 (313)
++|+.|++.. ..... + ..+ ++|+.|.+.+...... ..+. .+ ++|++|.+++|..+.- ...+ ..
T Consensus 112 ~sLe~L~L~~-n~~~~--L----~~LPssLk~L~I~~~n~~~~---~~lp~~LPsSLk~L~Is~c~~i~L--P~~L--P~ 177 (426)
T PRK15386 112 ESVRSLEIKG-SATDS--I----KNVPNGLTSLSINSYNPENQ---ARIDNLISPSLKTLSLTGCSNIIL--PEKL--PE 177 (426)
T ss_pred cccceEEeCC-CCCcc--c----ccCcchHhheeccccccccc---cccccccCCcccEEEecCCCcccC--cccc--cc
Confidence 5788888765 23221 1 223 4677777743221110 0011 12 5899999988854321 0112 25
Q ss_pred CCceeeccCC
Q 021374 269 NLVSLNLTWC 278 (313)
Q Consensus 269 ~L~~L~l~~~ 278 (313)
+|++|+++.+
T Consensus 178 SLk~L~ls~n 187 (426)
T PRK15386 178 SLQSITLHIE 187 (426)
T ss_pred cCcEEEeccc
Confidence 8888888764
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.58 E-value=0.0008 Score=53.12 Aligned_cols=86 Identities=27% Similarity=0.370 Sum_probs=42.9
Q ss_pred CCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccch-HHHHHHHHhCCCCcEEecCCCCCCCHH-HHHHHHhh
Q 021374 139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLD-KSLQLIADNYQELESLNLTRCVKLTDG-GLQKILIK 216 (313)
Q Consensus 139 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~l~~l~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~ 216 (313)
+|+|++|.++.+..-...++..++..+|+|++|++++. .+.+ ..+..+.. +.+|..|++..|....-. .=..++.-
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~-l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKE-LENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhh-hcchhhhhcccCCccccccHHHHHHHH
Confidence 45666666665533333445555555666666666663 3332 22332322 566667777665332211 11233444
Q ss_pred CCCCCEEEeC
Q 021374 217 CSSLRSLNLY 226 (313)
Q Consensus 217 ~~~L~~L~l~ 226 (313)
+++|+.|+-.
T Consensus 142 l~~L~~LD~~ 151 (260)
T KOG2739|consen 142 LPSLKYLDGC 151 (260)
T ss_pred hhhhcccccc
Confidence 5666665554
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.48 E-value=0.00072 Score=51.37 Aligned_cols=107 Identities=18% Similarity=0.178 Sum_probs=67.1
Q ss_pred CCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCC
Q 021374 165 CKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAH 244 (313)
Q Consensus 165 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 244 (313)
..+...+++++.. +.. +.. ..++++|..|.+.+ +.++.-+ +.+..-+++|+.|.+.+.+-..-..+..++.+|+
T Consensus 41 ~d~~d~iDLtdNd-l~~--l~~-lp~l~rL~tLll~n-NrIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~ 114 (233)
T KOG1644|consen 41 LDQFDAIDLTDND-LRK--LDN-LPHLPRLHTLLLNN-NRITRID-PDLDTFLPNLKTLILTNNSIQELGDLDPLASCPK 114 (233)
T ss_pred ccccceecccccc-hhh--ccc-CCCccccceEEecC-Ccceeec-cchhhhccccceEEecCcchhhhhhcchhccCCc
Confidence 3466777777742 211 221 23478899999988 5665411 1123346889999998843333344666778999
Q ss_pred CCEEecCCCCCCChH-H--HHHhhCCCCCceeeccCC
Q 021374 245 LKFLDLCGAQNLSDE-G--LACIAKCKNLVSLNLTWC 278 (313)
Q Consensus 245 L~~L~l~~~~~~~~~-~--~~~l~~~~~L~~L~l~~~ 278 (313)
|++|.+-+|+ ++.. . ...+..+|+|+.||+...
T Consensus 115 L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 115 LEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cceeeecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 9999998884 4332 2 112456899999998754
No 66
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.40 E-value=0.0017 Score=54.60 Aligned_cols=109 Identities=20% Similarity=0.185 Sum_probs=59.1
Q ss_pred HhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCC
Q 021374 189 DNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCK 268 (313)
Q Consensus 189 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 268 (313)
..+++|..|++++ +.+.+ ++.-......|+.|+++.. ++. ..+..+-....++++-.+++ .+..-....+.++.
T Consensus 432 ~~l~kLt~L~L~N-N~Ln~--LP~e~~~lv~Lq~LnlS~N-rFr-~lP~~~y~lq~lEtllas~n-qi~~vd~~~l~nm~ 505 (565)
T KOG0472|consen 432 SQLQKLTFLDLSN-NLLND--LPEEMGSLVRLQTLNLSFN-RFR-MLPECLYELQTLETLLASNN-QIGSVDPSGLKNMR 505 (565)
T ss_pred Hhhhcceeeeccc-chhhh--cchhhhhhhhhheeccccc-ccc-cchHHHhhHHHHHHHHhccc-cccccChHHhhhhh
Confidence 3456666666666 33332 2212233444666666652 221 11111112223444444444 44443344466788
Q ss_pred CCceeeccCCCCCChHHHHHHHHhCCCccEeecCCccc
Q 021374 269 NLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMN 306 (313)
Q Consensus 269 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 306 (313)
+|.+||+.++ .+ ..+..+..+|.+|++|++.+|.+
T Consensus 506 nL~tLDL~nN-dl--q~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 506 NLTTLDLQNN-DL--QQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred hcceeccCCC-ch--hhCChhhccccceeEEEecCCcc
Confidence 9999999887 22 23344556889999999999853
No 67
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.23 E-value=0.0076 Score=34.04 Aligned_cols=37 Identities=30% Similarity=0.339 Sum_probs=21.7
Q ss_pred CCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCC
Q 021374 218 SSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLS 257 (313)
Q Consensus 218 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 257 (313)
++|++|+++++ .+++. ...++++++|++|++++| .++
T Consensus 1 ~~L~~L~l~~N-~i~~l-~~~l~~l~~L~~L~l~~N-~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDL-PPELSNLPNLETLNLSNN-PIS 37 (44)
T ss_dssp TT-SEEEETSS-S-SSH-GGHGTTCTTSSEEEETSS-CCS
T ss_pred CcceEEEccCC-CCccc-CchHhCCCCCCEEEecCC-CCC
Confidence 45677777763 45432 223677777777777777 454
No 68
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.15 E-value=5.7e-05 Score=55.71 Aligned_cols=128 Identities=23% Similarity=0.226 Sum_probs=80.2
Q ss_pred CCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCC
Q 021374 165 CKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAH 244 (313)
Q Consensus 165 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 244 (313)
+.+++.|.++.. .++.. -+.++. +.+|+.|++.+ +.+.+ ++.-++.+++|+.|+++- ..+ ...++.++++|.
T Consensus 32 ~s~ITrLtLSHN-Kl~~v-ppnia~-l~nlevln~~n-nqie~--lp~~issl~klr~lnvgm-nrl-~~lprgfgs~p~ 103 (264)
T KOG0617|consen 32 MSNITRLTLSHN-KLTVV-PPNIAE-LKNLEVLNLSN-NQIEE--LPTSISSLPKLRILNVGM-NRL-NILPRGFGSFPA 103 (264)
T ss_pred hhhhhhhhcccC-ceeec-CCcHHH-hhhhhhhhccc-chhhh--cChhhhhchhhhheecch-hhh-hcCccccCCCch
Confidence 345666777763 34331 122333 67899999988 56654 444467789999999975 222 234567789999
Q ss_pred CCEEecCCCCCCChHHH-HHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCc
Q 021374 245 LKFLDLCGAQNLSDEGL-ACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAE 304 (313)
Q Consensus 245 L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 304 (313)
|+.|++.+| .+....+ ..+..++.|+.|+++++. +... ..++. .+.+|+-|.+..|
T Consensus 104 levldltyn-nl~e~~lpgnff~m~tlralyl~dnd-fe~l-p~dvg-~lt~lqil~lrdn 160 (264)
T KOG0617|consen 104 LEVLDLTYN-NLNENSLPGNFFYMTTLRALYLGDND-FEIL-PPDVG-KLTNLQILSLRDN 160 (264)
T ss_pred hhhhhcccc-ccccccCCcchhHHHHHHHHHhcCCC-cccC-Chhhh-hhcceeEEeeccC
Confidence 999999988 5655432 224456788899998872 2111 11122 3567777777654
No 69
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.85 E-value=0.0086 Score=52.19 Aligned_cols=147 Identities=26% Similarity=0.337 Sum_probs=93.0
Q ss_pred CCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCC
Q 021374 115 DLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQEL 194 (313)
Q Consensus 115 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L 194 (313)
+|+.|++++. .+.... .-...+++|+.|+++.+ .+.+. .......++|+.|.+++. .+.+ ++........|
T Consensus 141 nL~~L~l~~N-~i~~l~--~~~~~l~~L~~L~l~~N-~l~~l--~~~~~~~~~L~~L~ls~N-~i~~--l~~~~~~~~~L 211 (394)
T COG4886 141 NLKELDLSDN-KIESLP--SPLRNLPNLKNLDLSFN-DLSDL--PKLLSNLSNLNNLDLSGN-KISD--LPPEIELLSAL 211 (394)
T ss_pred hccccccccc-chhhhh--hhhhccccccccccCCc-hhhhh--hhhhhhhhhhhheeccCC-cccc--Cchhhhhhhhh
Confidence 7888988874 333221 12367899999999988 55543 222225789999999984 4544 33332234559
Q ss_pred cEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceee
Q 021374 195 ESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLN 274 (313)
Q Consensus 195 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 274 (313)
+.|.+++...+.. ........++..+.+.+ ..+.+ ....++.++++++|++++| .+++... ++...+|+.|+
T Consensus 212 ~~l~~~~N~~~~~---~~~~~~~~~l~~l~l~~-n~~~~-~~~~~~~l~~l~~L~~s~n-~i~~i~~--~~~~~~l~~L~ 283 (394)
T COG4886 212 EELDLSNNSIIEL---LSSLSNLKNLSGLELSN-NKLED-LPESIGNLSNLETLDLSNN-QISSISS--LGSLTNLRELD 283 (394)
T ss_pred hhhhhcCCcceec---chhhhhcccccccccCC-ceeee-ccchhccccccceeccccc-ccccccc--ccccCccCEEe
Confidence 9999988422221 22245566666666554 22221 1345667788999999998 5655322 66788999999
Q ss_pred ccCC
Q 021374 275 LTWC 278 (313)
Q Consensus 275 l~~~ 278 (313)
++++
T Consensus 284 ~s~n 287 (394)
T COG4886 284 LSGN 287 (394)
T ss_pred ccCc
Confidence 9886
No 70
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.61 E-value=0.0048 Score=50.57 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=35.5
Q ss_pred HHHHHHHcCCCccchhHHhhccHHHHHHHccCCCcceeecc
Q 021374 24 KVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDL 64 (313)
Q Consensus 24 eiL~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~~l~~ 64 (313)
++-..||+||+..+++.|..||++|+.+ ...|.+|+.+-.
T Consensus 85 hi~e~ilsyld~~sLc~celv~k~W~r~-l~dg~~WKkLie 124 (499)
T KOG0281|consen 85 HIAENILSYLDALSLCACELVCKEWKRV-LSDGMLWKKLIE 124 (499)
T ss_pred HHHHHHHHhcchhhhhHHHHHHHHHHHH-hccchHHHHHHH
Confidence 4888899999999999999999999998 488999987643
No 71
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.47 E-value=0.012 Score=28.26 Aligned_cols=21 Identities=43% Similarity=0.547 Sum_probs=10.6
Q ss_pred CCCceeeccCCCCCChHHHHHH
Q 021374 268 KNLVSLNLTWCVRITDVGVMAI 289 (313)
Q Consensus 268 ~~L~~L~l~~~~~~~~~~~~~l 289 (313)
++|++|+|++| .+++.++..+
T Consensus 2 ~~L~~L~l~~n-~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNN-QITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSS-BEHHHHHHHH
T ss_pred CCCCEEEccCC-cCCHHHHHHh
Confidence 45556666555 4555555544
No 72
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.33 E-value=0.0059 Score=53.57 Aligned_cols=127 Identities=23% Similarity=0.263 Sum_probs=74.8
Q ss_pred cCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhC
Q 021374 138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKC 217 (313)
Q Consensus 138 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 217 (313)
.+..++.+.+..+ .+.. ...-...+.+|+.|++.+. .+.. +......+++|+.|++++ +.+.. +.. +..+
T Consensus 70 ~l~~l~~l~l~~n-~i~~--~~~~l~~~~~l~~l~l~~n-~i~~--i~~~l~~~~~L~~L~ls~-N~I~~--i~~-l~~l 139 (414)
T KOG0531|consen 70 SLTSLKELNLRQN-LIAK--ILNHLSKLKSLEALDLYDN-KIEK--IENLLSSLVNLQVLDLSF-NKITK--LEG-LSTL 139 (414)
T ss_pred HhHhHHhhccchh-hhhh--hhcccccccceeeeecccc-chhh--cccchhhhhcchheeccc-ccccc--ccc-hhhc
Confidence 3445555555544 3322 1111134578888888773 3322 333133478899999988 56654 222 2455
Q ss_pred CCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHH-HHhhCCCCCceeeccCCC
Q 021374 218 SSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGL-ACIAKCKNLVSLNLTWCV 279 (313)
Q Consensus 218 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~ 279 (313)
+.|+.|++.++ .+.. +..+..++.|+.+++++| .+++... . +..+.+++.+++.++.
T Consensus 140 ~~L~~L~l~~N-~i~~--~~~~~~l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 140 TLLKELNLSGN-LISD--ISGLESLKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred cchhhheeccC-cchh--ccCCccchhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCc
Confidence 66888888873 3432 344445778888888888 4444322 2 4667888888888873
No 73
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.21 E-value=0.024 Score=48.75 Aligned_cols=135 Identities=21% Similarity=0.262 Sum_probs=82.6
Q ss_pred hcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhh
Q 021374 137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIK 216 (313)
Q Consensus 137 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 216 (313)
..|++++.|++++| .+... + .-.++|++|.+.+|..++. ++... .++|+.|++++|..+.. +
T Consensus 49 ~~~~~l~~L~Is~c-~L~sL--P---~LP~sLtsL~Lsnc~nLts--LP~~L--P~nLe~L~Ls~Cs~L~s-----L--- 110 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESL--P---VLPNELTEITIENCNNLTT--LPGSI--PEGLEKLTVCHCPEISG-----L--- 110 (426)
T ss_pred HHhcCCCEEEeCCC-CCccc--C---CCCCCCcEEEccCCCCccc--CCchh--hhhhhheEccCcccccc-----c---
Confidence 44799999999988 55432 2 1234799999999876533 22211 35899999999855431 1
Q ss_pred CCCCCEEEeCCCCCCCHHHHHHhhcC-CCCCEEecCCCCCCChHHHHHhh-C-CCCCceeeccCCCCCChHHHHHHHHhC
Q 021374 217 CSSLRSLNLYALSGFTDEAYKKISLL-AHLKFLDLCGAQNLSDEGLACIA-K-CKNLVSLNLTWCVRITDVGVMAIAEGC 293 (313)
Q Consensus 217 ~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~l~-~-~~~L~~L~l~~~~~~~~~~~~~l~~~~ 293 (313)
.++|+.|.+.+ ..... +..+ ++|+.|.+.++....... +. . .++|++|++++|..+. +...+
T Consensus 111 P~sLe~L~L~~-n~~~~-----L~~LPssLk~L~I~~~n~~~~~~---lp~~LPsSLk~L~Is~c~~i~------LP~~L 175 (426)
T PRK15386 111 PESVRSLEIKG-SATDS-----IKNVPNGLTSLSINSYNPENQAR---IDNLISPSLKTLSLTGCSNII------LPEKL 175 (426)
T ss_pred ccccceEEeCC-CCCcc-----cccCcchHhheeccccccccccc---cccccCCcccEEEecCCCccc------Ccccc
Confidence 35688888864 22221 2333 478888885432111111 11 1 2689999999986442 12223
Q ss_pred -CCccEeecCCc
Q 021374 294 -SSLEFLSSGAE 304 (313)
Q Consensus 294 -~~L~~L~l~~~ 304 (313)
++|+.|+++.+
T Consensus 176 P~SLk~L~ls~n 187 (426)
T PRK15386 176 PESLQSITLHIE 187 (426)
T ss_pred cccCcEEEeccc
Confidence 38999998764
No 74
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.10 E-value=0.022 Score=43.53 Aligned_cols=106 Identities=21% Similarity=0.191 Sum_probs=72.9
Q ss_pred CCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCCh-HHHHHhhCCCC
Q 021374 191 YQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSD-EGLACIAKCKN 269 (313)
Q Consensus 191 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~ 269 (313)
..+...+++++. .+.. ...+..++.|.+|.+++ ..++......-..+|+|+.|.+.+| .+.. ..+..++.||+
T Consensus 41 ~d~~d~iDLtdN-dl~~---l~~lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~ 114 (233)
T KOG1644|consen 41 LDQFDAIDLTDN-DLRK---LDNLPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPK 114 (233)
T ss_pred ccccceeccccc-chhh---cccCCCccccceEEecC-CcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCc
Confidence 456778888873 3332 12245678899999988 5676655544556789999999998 4443 33566778999
Q ss_pred CceeeccCCCCCChHHHH--HHHHhCCCccEeecCC
Q 021374 270 LVSLNLTWCVRITDVGVM--AIAEGCSSLEFLSSGA 303 (313)
Q Consensus 270 L~~L~l~~~~~~~~~~~~--~l~~~~~~L~~L~l~~ 303 (313)
|++|.+-++ .++...-+ .+....|+|+.||+.+
T Consensus 115 L~~Ltll~N-pv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 115 LEYLTLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cceeeecCC-chhcccCceeEEEEecCcceEeehhh
Confidence 999999988 45444322 1233578999999864
No 75
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=94.90 E-value=0.011 Score=48.09 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=35.5
Q ss_pred CCch-HHHHHHHcCC-----CccchhHHhhccHHHHHHHccCCCcceeecc
Q 021374 20 ETVP-KVIRIMSTRL-----SQRDIISLLLVSPWLHRTLVSYPSLWLVIDL 64 (313)
Q Consensus 20 ~~~p-eiL~~If~~L-----~~~~l~~~~~v~~~w~~~~~~~~~~~~~l~~ 64 (313)
..+| |||..||..+ +.+++.+++.|||.|+.. +++|.+|+..-+
T Consensus 108 ~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~-~R~~~lwR~aC~ 157 (366)
T KOG2997|consen 108 SVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC-ARDPELWRLACL 157 (366)
T ss_pred hhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH-HcChHHHHHHHH
Confidence 4455 7999988764 468899999999999987 699999995543
No 76
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.68 E-value=0.0083 Score=42.91 Aligned_cols=106 Identities=22% Similarity=0.206 Sum_probs=48.8
Q ss_pred CCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCC
Q 021374 167 HIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLK 246 (313)
Q Consensus 167 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 246 (313)
.+..++++.|.-..-....+.......|+..++++ +.+.+ ....+...++.++.|++.+ +.+.+. +..++.+|.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~-N~fk~-fp~kft~kf~t~t~lNl~~-neisdv-PeE~Aam~aLr 103 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSD-NGFKK-FPKKFTIKFPTATTLNLAN-NEISDV-PEELAAMPALR 103 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEeccc-chhhh-CCHHHhhccchhhhhhcch-hhhhhc-hHHHhhhHHhh
Confidence 34555555553211111222222234566666666 33322 1112334455666666665 344433 33366666777
Q ss_pred EEecCCCCCCChHHHHHhhCCCCCceeeccCC
Q 021374 247 FLDLCGAQNLSDEGLACIAKCKNLVSLNLTWC 278 (313)
Q Consensus 247 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 278 (313)
.|+++.|+ +... ...+..+.+|-.|+..++
T Consensus 104 ~lNl~~N~-l~~~-p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 104 SLNLRFNP-LNAE-PRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred hcccccCc-cccc-hHHHHHHHhHHHhcCCCC
Confidence 77777663 2221 222333445555555544
No 77
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.46 E-value=0.017 Score=41.37 Aligned_cols=84 Identities=26% Similarity=0.273 Sum_probs=56.1
Q ss_pred CCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCce
Q 021374 193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVS 272 (313)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 272 (313)
.+..++++.|.-..-......+..-.+|+..++++ +.+.+........+|.+++|++.+| .+.+-..+ ++.++.|+.
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE-~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLANN-EISDVPEE-LAAMPALRS 104 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcchh-hhhhchHH-HhhhHHhhh
Confidence 46677888874332222233345556788888887 3444333333447889999999998 67665433 888999999
Q ss_pred eeccCCC
Q 021374 273 LNLTWCV 279 (313)
Q Consensus 273 L~l~~~~ 279 (313)
|++++|+
T Consensus 105 lNl~~N~ 111 (177)
T KOG4579|consen 105 LNLRFNP 111 (177)
T ss_pred cccccCc
Confidence 9999984
No 78
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=94.45 E-value=0.074 Score=26.58 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=15.7
Q ss_pred CCCceeeccCCCCCChHHHHHHHHh
Q 021374 268 KNLVSLNLTWCVRITDVGVMAIAEG 292 (313)
Q Consensus 268 ~~L~~L~l~~~~~~~~~~~~~l~~~ 292 (313)
++|++|+|++| .+++++...+.+.
T Consensus 2 ~~L~~LdL~~N-~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNN-KLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCC-CCCHHHHHHHHHH
Confidence 45677777766 6677776666543
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.42 E-value=0.031 Score=26.73 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=15.0
Q ss_pred CCCCCEEecCCCCCCChHHHHHhh
Q 021374 242 LAHLKFLDLCGAQNLSDEGLACIA 265 (313)
Q Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~l~ 265 (313)
+++|++|+|++| .+++.++..++
T Consensus 1 ~~~L~~L~l~~n-~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNN-QITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSS-BEHHHHHHHHH
T ss_pred CCCCCEEEccCC-cCCHHHHHHhC
Confidence 367888888888 58887776664
No 80
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=94.26 E-value=0.034 Score=47.20 Aligned_cols=39 Identities=13% Similarity=0.309 Sum_probs=33.0
Q ss_pred cccccCCchHHHHHHHcCC-CccchhHHhhccHHHHHHHcc
Q 021374 15 ETWSKETVPKVIRIMSTRL-SQRDIISLLLVSPWLHRTLVS 54 (313)
Q Consensus 15 ~~~~~~~~peiL~~If~~L-~~~~l~~~~~v~~~w~~~~~~ 54 (313)
.+|+ ++++|+|..|..+| ...|+++.+.||+.||.++..
T Consensus 2 ~~Ws-~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 2 ADWS-TLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred CChh-hCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 4697 45558999999999 578999999999999998654
No 81
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=92.08 E-value=0.066 Score=47.01 Aligned_cols=112 Identities=28% Similarity=0.326 Sum_probs=72.8
Q ss_pred hcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhh
Q 021374 137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIK 216 (313)
Q Consensus 137 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 216 (313)
..+.+|+.|++..+ .+.. +......+++|+.|++++. .++. +..+.. ++.|+.|++.+ +.+.. +.. +..
T Consensus 92 ~~~~~l~~l~l~~n-~i~~--i~~~l~~~~~L~~L~ls~N-~I~~--i~~l~~-l~~L~~L~l~~-N~i~~--~~~-~~~ 160 (414)
T KOG0531|consen 92 SKLKSLEALDLYDN-KIEK--IENLLSSLVNLQVLDLSFN-KITK--LEGLST-LTLLKELNLSG-NLISD--ISG-LES 160 (414)
T ss_pred ccccceeeeecccc-chhh--cccchhhhhcchheecccc-cccc--ccchhh-ccchhhheecc-Ccchh--ccC-Ccc
Confidence 55688999999877 4432 2232356899999999994 5554 333333 56799999999 45543 111 233
Q ss_pred CCCCCEEEeCCCCCCCHHHH-HHhhcCCCCCEEecCCCCCCChHHH
Q 021374 217 CSSLRSLNLYALSGFTDEAY-KKISLLAHLKFLDLCGAQNLSDEGL 261 (313)
Q Consensus 217 ~~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~ 261 (313)
++.|+.++++++ .+..... . +..+.+++.+.+.+|.......+
T Consensus 161 l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~ 204 (414)
T KOG0531|consen 161 LKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNSIREIEGL 204 (414)
T ss_pred chhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCchhcccch
Confidence 678888888874 4433222 2 56788999999999854433333
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=90.71 E-value=0.42 Score=23.78 Aligned_cols=22 Identities=41% Similarity=0.604 Sum_probs=17.9
Q ss_pred CCCCEEecCCCCCCChHHHHHhh
Q 021374 243 AHLKFLDLCGAQNLSDEGLACIA 265 (313)
Q Consensus 243 ~~L~~L~l~~~~~~~~~~~~~l~ 265 (313)
++|++|+|++| .+++.+...++
T Consensus 2 ~~L~~LdL~~N-~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNN-KLGDEGARALA 23 (28)
T ss_pred CccCEEECCCC-CCCHHHHHHHH
Confidence 57899999998 78888877665
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=88.49 E-value=1.1 Score=40.04 Aligned_cols=40 Identities=23% Similarity=0.301 Sum_probs=20.6
Q ss_pred HHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCC
Q 021374 188 ADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYA 227 (313)
Q Consensus 188 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 227 (313)
....|.+.++++++..-..-+++..+....|+|+.|+|++
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~ 253 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSH 253 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHHHhcchhheeeccc
Confidence 3344566666666532222234455555556666666655
No 84
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=87.85 E-value=0.41 Score=20.65 Aligned_cols=10 Identities=40% Similarity=0.454 Sum_probs=4.4
Q ss_pred CCceeeccCC
Q 021374 269 NLVSLNLTWC 278 (313)
Q Consensus 269 ~L~~L~l~~~ 278 (313)
+|+.|++++|
T Consensus 2 ~L~~L~l~~n 11 (17)
T PF13504_consen 2 NLRTLDLSNN 11 (17)
T ss_dssp T-SEEEETSS
T ss_pred ccCEEECCCC
Confidence 4445555544
No 85
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=86.82 E-value=0.27 Score=44.45 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=39.5
Q ss_pred ccccccCCchHHHHHHHcCCCccchhHHhhccHHHHHHHccCCCcceeec
Q 021374 14 EETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVID 63 (313)
Q Consensus 14 ~~~~~~~~~peiL~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~~l~ 63 (313)
..++...+|+|+..+||.||+.++++.+++||+.|+.....++..|+...
T Consensus 104 ~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~ 153 (537)
T KOG0274|consen 104 QRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCR 153 (537)
T ss_pred ccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhh
Confidence 44555444448989999999999999999999999998766676665443
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=83.59 E-value=2.2 Score=38.10 Aligned_cols=40 Identities=20% Similarity=0.330 Sum_probs=22.2
Q ss_pred CCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCC
Q 021374 111 GSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWN 150 (313)
Q Consensus 111 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 150 (313)
.+.+.+..+.|+++.-..-..+..+....|+|+.|+|+++
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 3445566666655433334455555566666666666655
No 87
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=83.11 E-value=0.91 Score=22.16 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=16.7
Q ss_pred CCceeeccCCCCCChHHHHHHHHhCC
Q 021374 269 NLVSLNLTWCVRITDVGVMAIAEGCS 294 (313)
Q Consensus 269 ~L~~L~l~~~~~~~~~~~~~l~~~~~ 294 (313)
+|++|+|.+...-.+..+..+..+||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 47778887763334446777776665
No 88
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=73.83 E-value=1.4 Score=20.39 Aligned_cols=13 Identities=38% Similarity=0.398 Sum_probs=7.7
Q ss_pred CCceeeccCCCCCC
Q 021374 269 NLVSLNLTWCVRIT 282 (313)
Q Consensus 269 ~L~~L~l~~~~~~~ 282 (313)
+|++|++++| .++
T Consensus 1 ~L~~Ldls~n-~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGN-NLT 13 (22)
T ss_dssp TESEEEETSS-EES
T ss_pred CccEEECCCC-cCE
Confidence 3566666666 444
No 89
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=71.73 E-value=1 Score=31.90 Aligned_cols=102 Identities=23% Similarity=0.400 Sum_probs=51.5
Q ss_pred hCCCCcEEecCCC-CCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCC
Q 021374 190 NYQELESLNLTRC-VKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCK 268 (313)
Q Consensus 190 ~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 268 (313)
.+.+|+.+.+... ..+.. ..+.++++|+.+.+.. .+....-..+..+++|+.+.+... +...+-..+..++
T Consensus 10 ~~~~l~~i~~~~~~~~I~~----~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 10 NCSNLESITFPNTIKKIGE----NAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCT 81 (129)
T ss_dssp T-TT--EEEETST--EE-T----TTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-T
T ss_pred CCCCCCEEEECCCeeEeCh----hhcccccccccccccc--cccccceeeeeccccccccccccc--ccccccccccccc
Confidence 4678999998752 11111 1246778899999976 244333445667888999999653 3222223466789
Q ss_pred CCceeeccCCCCCChHHHHHHHHhCCCccEeecCC
Q 021374 269 NLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGA 303 (313)
Q Consensus 269 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 303 (313)
+|+.+.+... ++..+...+ ..+ +|+.+.+..
T Consensus 82 ~l~~i~~~~~--~~~i~~~~f-~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 82 NLKNIDIPSN--ITEIGSSSF-SNC-NLKEINIPS 112 (129)
T ss_dssp TECEEEETTT---BEEHTTTT-TT--T--EEE-TT
T ss_pred cccccccCcc--ccEEchhhh-cCC-CceEEEECC
Confidence 9999999642 333332223 346 788887764
No 90
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=70.38 E-value=0.41 Score=42.82 Aligned_cols=85 Identities=20% Similarity=0.143 Sum_probs=50.0
Q ss_pred hCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCC
Q 021374 190 NYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKN 269 (313)
Q Consensus 190 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 269 (313)
..+.|..|+.+.|. +. .+..-+.+..+|+.|.+... .+. ..+..+. .-.|..|+++.| +++.- ...+.++..
T Consensus 164 ~~~tl~~ld~s~ne-i~--slpsql~~l~slr~l~vrRn-~l~-~lp~El~-~LpLi~lDfScN-kis~i-Pv~fr~m~~ 235 (722)
T KOG0532|consen 164 LLPTLAHLDVSKNE-IQ--SLPSQLGYLTSLRDLNVRRN-HLE-DLPEELC-SLPLIRLDFSCN-KISYL-PVDFRKMRH 235 (722)
T ss_pred cchhHHHhhhhhhh-hh--hchHHhhhHHHHHHHHHhhh-hhh-hCCHHHh-CCceeeeecccC-ceeec-chhhhhhhh
Confidence 35667777776642 22 12333455666777776552 221 2233344 336888898887 66543 344677889
Q ss_pred CceeeccCCCCCC
Q 021374 270 LVSLNLTWCVRIT 282 (313)
Q Consensus 270 L~~L~l~~~~~~~ 282 (313)
|++|-|.+|+.-+
T Consensus 236 Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 236 LQVLQLENNPLQS 248 (722)
T ss_pred heeeeeccCCCCC
Confidence 9999998885433
No 91
>PF13013 F-box-like_2: F-box-like domain
Probab=67.14 E-value=6.1 Score=27.30 Aligned_cols=28 Identities=7% Similarity=0.147 Sum_probs=23.9
Q ss_pred CCch-HHHHHHHcCCCccchhHHhhccHH
Q 021374 20 ETVP-KVIRIMSTRLSQRDIISLLLVSPW 47 (313)
Q Consensus 20 ~~~p-eiL~~If~~L~~~~l~~~~~v~~~ 47 (313)
..+| |++..||.|....++..+...|+.
T Consensus 23 ~DLP~ELl~~I~~~C~~~~l~~l~~~~~~ 51 (109)
T PF13013_consen 23 LDLPWELLQLIFDYCNDPILLALSRTCRA 51 (109)
T ss_pred hhChHHHHHHHHhhcCcHHHHHHHHHHHH
Confidence 3366 799999999999999988888883
No 92
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=60.86 E-value=8.1 Score=18.42 Aligned_cols=11 Identities=36% Similarity=0.356 Sum_probs=7.5
Q ss_pred CCCceeeccCC
Q 021374 268 KNLVSLNLTWC 278 (313)
Q Consensus 268 ~~L~~L~l~~~ 278 (313)
++|++|++++|
T Consensus 2 ~~L~~L~L~~N 12 (26)
T smart00369 2 PNLRELDLSNN 12 (26)
T ss_pred CCCCEEECCCC
Confidence 56677777666
No 93
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=60.86 E-value=8.1 Score=18.42 Aligned_cols=11 Identities=36% Similarity=0.356 Sum_probs=7.5
Q ss_pred CCCceeeccCC
Q 021374 268 KNLVSLNLTWC 278 (313)
Q Consensus 268 ~~L~~L~l~~~ 278 (313)
++|++|++++|
T Consensus 2 ~~L~~L~L~~N 12 (26)
T smart00370 2 PNLRELDLSNN 12 (26)
T ss_pred CCCCEEECCCC
Confidence 56677777666
No 94
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=56.00 E-value=38 Score=28.63 Aligned_cols=18 Identities=17% Similarity=0.148 Sum_probs=9.1
Q ss_pred CCCCCEEecCCCCCCChHH
Q 021374 242 LAHLKFLDLCGAQNLSDEG 260 (313)
Q Consensus 242 ~~~L~~L~l~~~~~~~~~~ 260 (313)
.+.|++|.+.+| .|+..+
T Consensus 254 n~sl~slnvesn-FItg~g 271 (353)
T KOG3735|consen 254 NKSLTSLNVESN-FITGLG 271 (353)
T ss_pred cchhhheecccc-ccccHH
Confidence 445555555555 454444
No 95
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=55.17 E-value=41 Score=28.43 Aligned_cols=93 Identities=19% Similarity=0.195 Sum_probs=46.3
Q ss_pred HHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCC---CCcEEeccCCcccch---HHHHHHHHhCCCCcEEecCCCCCC
Q 021374 132 IEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCK---HIIDLNLSGCKNLLD---KSLQLIADNYQELESLNLTRCVKL 205 (313)
Q Consensus 132 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~---~L~~L~l~~~~~~~~---~~l~~l~~~~~~L~~L~l~~~~~~ 205 (313)
+..+-..-+.|+.+++.....++...+..+...+. ..+...+.+. ..++ ..+......++.|++|++.+ +++
T Consensus 190 leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~t-r~~d~vA~a~a~ml~~n~sl~slnves-nFI 267 (353)
T KOG3735|consen 190 LERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANT-RSSDPVAFAIAEMLKENKSLTSLNVES-NFI 267 (353)
T ss_pred HHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcc-cCCchhHHHHHHHHhhcchhhheeccc-ccc
Confidence 34444444667777776666666665555544332 3333344332 1222 11222233356677777766 566
Q ss_pred CHHHHHHHHhhC---CCCCEEEeC
Q 021374 206 TDGGLQKILIKC---SSLRSLNLY 226 (313)
Q Consensus 206 ~~~~~~~~~~~~---~~L~~L~l~ 226 (313)
++.++.+++..+ .+|..+.+.
T Consensus 268 tg~gi~a~~~al~~n~tl~el~~d 291 (353)
T KOG3735|consen 268 TGLGIMALLRALQSNKSLTELKND 291 (353)
T ss_pred ccHHHHHHHHHHhccchhhHhhhh
Confidence 666665554433 234444443
No 96
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=51.13 E-value=2.6 Score=38.05 Aligned_cols=126 Identities=22% Similarity=0.237 Sum_probs=67.3
Q ss_pred CCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCC
Q 021374 141 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSL 220 (313)
Q Consensus 141 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 220 (313)
-|+.|-++++ .++.- ...+ ...+.|..|+.+.|... .++.-...+.+|+.|.+.. +.+.. +..-+. .-.|
T Consensus 144 pLkvli~sNN-kl~~l-p~~i-g~~~tl~~ld~s~nei~---slpsql~~l~slr~l~vrR-n~l~~--lp~El~-~LpL 213 (722)
T KOG0532|consen 144 PLKVLIVSNN-KLTSL-PEEI-GLLPTLAHLDVSKNEIQ---SLPSQLGYLTSLRDLNVRR-NHLED--LPEELC-SLPL 213 (722)
T ss_pred cceeEEEecC-ccccC-Cccc-ccchhHHHhhhhhhhhh---hchHHhhhHHHHHHHHHhh-hhhhh--CCHHHh-CCce
Confidence 4677777665 33221 1111 23567777888776322 2222222356677777766 33332 222122 3468
Q ss_pred CEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHh-hCCCCCceeeccCC
Q 021374 221 RSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACI-AKCKNLVSLNLTWC 278 (313)
Q Consensus 221 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~ 278 (313)
..|++++ +.+. ..+..+..+..|++|.|.+|+.-+...-..+ +..-=.++|+..-|
T Consensus 214 i~lDfSc-Nkis-~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 214 IRLDFSC-NKIS-YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeeccc-Ccee-ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 8888887 3443 2344566788999999998865443321111 22333466766666
No 97
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=49.90 E-value=17 Score=17.69 Aligned_cols=11 Identities=36% Similarity=0.443 Sum_probs=6.3
Q ss_pred CCCCEEecCCC
Q 021374 243 AHLKFLDLCGA 253 (313)
Q Consensus 243 ~~L~~L~l~~~ 253 (313)
.+|+.|++++|
T Consensus 2 ~~L~~L~L~~N 12 (26)
T smart00365 2 TNLEELDLSQN 12 (26)
T ss_pred CccCEEECCCC
Confidence 35566666555
No 98
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=44.83 E-value=15 Score=24.73 Aligned_cols=26 Identities=19% Similarity=0.278 Sum_probs=20.1
Q ss_pred cccccCCchHHHHHHHcCCCccchhHH
Q 021374 15 ETWSKETVPKVIRIMSTRLSQRDIISL 41 (313)
Q Consensus 15 ~~~~~~~~peiL~~If~~L~~~~l~~~ 41 (313)
..|. .+|+|+-..|+++|+..|+...
T Consensus 70 ~~w~-~LP~EIk~~Il~~L~~~dL~~l 95 (97)
T PF09372_consen 70 NYWN-ILPIEIKYKILEYLSNKDLKKL 95 (97)
T ss_pred Cchh-hCCHHHHHHHHHcCCHHHHHHH
Confidence 5685 3344999999999999998654
No 99
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=33.53 E-value=23 Score=24.92 Aligned_cols=6 Identities=17% Similarity=0.656 Sum_probs=2.2
Q ss_pred cCCCCc
Q 021374 164 NCKHII 169 (313)
Q Consensus 164 ~~~~L~ 169 (313)
.++.|.
T Consensus 59 ~~~~l~ 64 (120)
T PF03382_consen 59 GCSSLN 64 (120)
T ss_pred hhhhcC
Confidence 333333
No 100
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=32.96 E-value=39 Score=16.51 Aligned_cols=16 Identities=13% Similarity=0.040 Sum_probs=11.8
Q ss_pred HHHHhCCCccEeecCC
Q 021374 288 AIAEGCSSLEFLSSGA 303 (313)
Q Consensus 288 ~l~~~~~~L~~L~l~~ 303 (313)
.++..+|+|+.||...
T Consensus 7 ~Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 7 KVIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHHCCccceecccc
Confidence 3556789999988754
No 101
>PF12586 DUF3760: Protein of unknown function (DUF3760); InterPro: IPR022235 This domain family is found in eukaryotes, and is typically between 46 and 64 amino acids in length.
Probab=30.98 E-value=26 Score=19.90 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=23.4
Q ss_pred HHHHHHHcCCCccchhHHhhccHHHHHHHccCCCcceeec
Q 021374 24 KVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVID 63 (313)
Q Consensus 24 eiL~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~~l~ 63 (313)
++...|+.++..-.-.....+||.+++. --|.+++.+.
T Consensus 7 ~v~~lI~~~l~~i~P~t~l~lSr~~yk~--iiP~iYr~v~ 44 (46)
T PF12586_consen 7 PVHDLILDELSRIRPLTYLRLSRYHYKR--IIPIIYRHVT 44 (46)
T ss_pred hHHHHHHHHHHhcCChhheeeeHHHhhh--hhhhhhheee
Confidence 4555566665544447778888887764 3465665553
No 102
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=26.22 E-value=1.3e+02 Score=26.98 Aligned_cols=48 Identities=21% Similarity=0.184 Sum_probs=22.8
Q ss_pred cCCCCCEEecCCCCCCChHHHHHhhC----CCCCceeeccCCCCCChHHHHHHH
Q 021374 241 LLAHLKFLDLCGAQNLSDEGLACIAK----CKNLVSLNLTWCVRITDVGVMAIA 290 (313)
Q Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~l~~----~~~L~~L~l~~~~~~~~~~~~~l~ 290 (313)
.-+.+..|+++++ ...+.+...+.+ ...++.+..+.+ .+++.++..+.
T Consensus 438 stqtl~kldisgn-~mgd~gap~lpkalq~n~rlr~ipds~n-~p~~~gl~p~~ 489 (553)
T KOG4242|consen 438 STQTLAKLDISGN-GMGDGGAPPLPKALQSNCRLRPIPDSLN-LPEDPGLGPRN 489 (553)
T ss_pred cCcccccccccCC-CcccCCCCcCccccCCCCccCCCCCCCC-Cccccccchhh
Confidence 4456666666665 444443333321 234555555544 44444444443
Done!