Query 021374
Match_columns 313
No_of_seqs 198 out of 2644
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 03:12:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021374.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021374hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ast_B S-phase kinase-associat 100.0 8.6E-32 2.9E-36 227.4 26.5 275 12-297 4-299 (336)
2 2p1m_B Transport inhibitor res 99.9 4.2E-26 1.4E-30 206.8 18.5 270 16-303 5-347 (594)
3 3ogk_B Coronatine-insensitive 99.9 4.8E-24 1.6E-28 193.3 18.5 31 21-51 16-47 (592)
4 2ast_B S-phase kinase-associat 99.9 2.3E-20 8E-25 157.3 18.9 189 112-304 91-282 (336)
5 3ogk_B Coronatine-insensitive 99.9 8.6E-20 3E-24 165.4 22.6 214 82-305 291-524 (592)
6 2p1m_B Transport inhibitor res 99.9 4.7E-20 1.6E-24 167.1 20.8 213 82-306 287-518 (594)
7 2ca6_A RAN GTPase-activating p 99.8 6.3E-17 2.2E-21 138.9 27.4 240 59-307 34-316 (386)
8 2ca6_A RAN GTPase-activating p 99.8 6.9E-17 2.4E-21 138.6 23.4 217 82-306 30-286 (386)
9 1z7x_W Ribonuclease inhibitor; 99.8 1.8E-16 6.2E-21 139.2 26.2 215 83-305 169-409 (461)
10 1z7x_W Ribonuclease inhibitor; 99.8 7.9E-17 2.7E-21 141.5 22.9 247 48-305 20-295 (461)
11 3goz_A Leucine-rich repeat-con 99.7 9E-16 3.1E-20 130.5 14.3 244 54-306 19-296 (362)
12 3goz_A Leucine-rich repeat-con 99.7 4.3E-15 1.5E-19 126.2 17.4 36 268-304 225-263 (362)
13 3un9_A NLR family member X1; l 99.6 9E-14 3.1E-18 118.1 17.5 175 84-265 72-260 (372)
14 3e4g_A ATP synthase subunit S, 99.6 4.7E-15 1.6E-19 110.5 8.2 104 193-298 62-171 (176)
15 1ozn_A Reticulon 4 receptor; N 99.6 6.4E-17 2.2E-21 133.0 -2.2 212 83-311 31-242 (285)
16 4fmz_A Internalin; leucine ric 99.6 4.3E-14 1.5E-18 119.4 14.2 195 81-304 129-343 (347)
17 3un9_A NLR family member X1; l 99.6 1.1E-13 3.6E-18 117.7 15.7 180 114-300 72-274 (372)
18 3zyj_A Leucine-rich repeat-con 99.5 7.4E-17 2.5E-21 140.8 -4.6 212 81-311 85-296 (440)
19 3v47_A TOLL-like receptor 5B a 99.5 1.4E-15 4.7E-20 133.4 2.9 116 191-312 298-413 (455)
20 3zyi_A Leucine-rich repeat-con 99.5 1.1E-16 3.8E-21 140.2 -4.1 211 82-311 97-307 (452)
21 4fmz_A Internalin; leucine ric 99.5 1.2E-13 4E-18 116.7 14.3 198 80-305 106-322 (347)
22 2z66_A Variable lymphocyte rec 99.5 4E-17 1.4E-21 135.6 -7.8 214 81-311 49-265 (306)
23 2z80_A TOLL-like receptor 2, v 99.5 4.8E-16 1.6E-20 131.7 -1.3 216 81-311 73-318 (353)
24 3v47_A TOLL-like receptor 5B a 99.5 2E-15 6.9E-20 132.3 1.0 87 215-305 296-382 (455)
25 3rfs_A Internalin B, repeat mo 99.5 5.3E-15 1.8E-19 120.6 1.7 176 83-278 40-215 (272)
26 3t6q_A CD180 antigen; protein- 99.5 1.1E-15 3.9E-20 138.7 -2.8 165 138-311 398-564 (606)
27 4glp_A Monocyte differentiatio 99.5 5.4E-15 1.8E-19 123.0 0.7 228 59-305 66-305 (310)
28 1h6u_A Internalin H; cell adhe 99.5 1E-13 3.5E-18 115.0 8.2 189 83-305 40-228 (308)
29 4fcg_A Uncharacterized protein 99.4 2E-15 6.9E-20 126.4 -3.5 61 215-278 203-263 (328)
30 3vq2_A TLR4, TOLL-like recepto 99.4 1E-15 3.6E-20 139.0 -5.7 165 138-311 397-562 (606)
31 2o6q_A Variable lymphocyte rec 99.4 4.1E-15 1.4E-19 121.2 -1.7 179 84-278 37-215 (270)
32 2id5_A Lingo-1, leucine rich r 99.4 3.7E-15 1.3E-19 131.5 -2.6 114 192-311 224-337 (477)
33 3e4g_A ATP synthase subunit S, 99.4 1.8E-13 6.1E-18 102.0 6.9 95 141-260 62-156 (176)
34 2z62_A TOLL-like receptor 4, v 99.4 1.4E-15 4.7E-20 124.4 -5.1 211 84-312 28-242 (276)
35 2z63_A TOLL-like receptor 4, v 99.4 2E-15 6.7E-20 136.1 -5.1 191 111-312 344-536 (570)
36 1wwl_A Monocyte differentiatio 99.4 1.8E-14 6.2E-19 119.9 0.7 207 82-305 93-307 (312)
37 2z66_A Variable lymphocyte rec 99.4 7.7E-16 2.6E-20 127.9 -8.7 206 83-305 27-234 (306)
38 2z80_A TOLL-like receptor 2, v 99.4 1.3E-14 4.3E-19 123.0 -2.1 208 83-305 51-288 (353)
39 3zyi_A Leucine-rich repeat-con 99.4 9E-15 3.1E-19 128.0 -3.3 204 83-305 74-277 (452)
40 1ziw_A TOLL-like receptor 3; i 99.4 3E-14 1E-18 131.1 -0.1 168 138-312 452-627 (680)
41 1o6v_A Internalin A; bacterial 99.4 1.3E-12 4.6E-17 114.7 10.3 100 191-304 286-385 (466)
42 1ozn_A Reticulon 4 receptor; N 99.4 1.8E-14 6E-19 118.4 -1.8 182 113-305 31-212 (285)
43 1o6v_A Internalin A; bacterial 99.4 1.9E-12 6.5E-17 113.7 11.0 168 112-305 197-364 (466)
44 1xku_A Decorin; proteoglycan, 99.4 3.2E-14 1.1E-18 119.4 -0.6 177 81-278 73-250 (330)
45 4fcg_A Uncharacterized protein 99.4 7.6E-15 2.6E-19 122.9 -4.5 203 82-305 102-312 (328)
46 1h6u_A Internalin H; cell adhe 99.4 6.7E-13 2.3E-17 110.1 7.0 166 114-305 41-206 (308)
47 3zyj_A Leucine-rich repeat-con 99.4 1.8E-14 6E-19 125.7 -2.8 204 83-305 63-266 (440)
48 4ezg_A Putative uncharacterize 99.4 2E-13 6.8E-18 105.7 3.3 149 140-305 44-192 (197)
49 3t6q_A CD180 antigen; protein- 99.4 6.1E-15 2.1E-19 133.9 -6.3 86 215-304 422-510 (606)
50 2id5_A Lingo-1, leucine rich r 99.4 2.3E-14 7.9E-19 126.4 -3.0 207 81-305 77-307 (477)
51 1h6t_A Internalin B; cell adhe 99.4 1.5E-12 5.2E-17 107.0 8.0 145 112-278 66-210 (291)
52 2z7x_B TOLL-like receptor 1, v 99.3 5.6E-13 1.9E-17 118.8 5.4 164 137-311 321-485 (520)
53 3vq2_A TLR4, TOLL-like recepto 99.3 2.1E-14 7E-19 130.5 -4.0 184 111-305 347-532 (606)
54 3rgz_A Protein brassinosteroid 99.3 3E-14 1E-18 132.7 -3.3 158 82-253 98-257 (768)
55 1ogq_A PGIP-2, polygalacturona 99.3 3.7E-15 1.3E-19 124.0 -8.7 205 81-304 73-278 (313)
56 2ra8_A Uncharacterized protein 99.3 3E-11 1E-15 101.8 14.9 219 74-305 97-341 (362)
57 3rfs_A Internalin B, repeat mo 99.3 9.5E-14 3.2E-18 113.2 -0.5 183 114-312 41-223 (272)
58 1m9s_A Internalin B; cell inva 99.3 2.1E-12 7.3E-17 116.3 6.7 167 82-278 41-207 (605)
59 1xku_A Decorin; proteoglycan, 99.3 1.4E-13 4.6E-18 115.5 -1.1 200 83-305 51-251 (330)
60 3o53_A Protein LRIM1, AGAP0063 99.3 8.2E-14 2.8E-18 116.2 -2.5 173 114-303 99-271 (317)
61 1p9a_G Platelet glycoprotein I 99.3 1.2E-13 4E-18 113.6 -1.6 182 114-311 31-212 (290)
62 4ezg_A Putative uncharacterize 99.3 1.6E-12 5.3E-17 100.6 4.8 151 114-282 44-194 (197)
63 4glp_A Monocyte differentiatio 99.3 1.3E-13 4.3E-18 114.6 -1.6 206 84-305 64-283 (310)
64 3o6n_A APL1; leucine-rich repe 99.3 8.2E-14 2.8E-18 119.6 -3.0 85 82-176 91-175 (390)
65 3rgz_A Protein brassinosteroid 99.3 8.3E-14 2.8E-18 129.7 -3.3 110 191-306 441-550 (768)
66 1wwl_A Monocyte differentiatio 99.3 1.3E-13 4.3E-18 114.8 -2.0 182 112-305 93-285 (312)
67 3oja_B Anopheles plasmodium-re 99.3 5.3E-14 1.8E-18 127.4 -4.7 85 82-176 97-181 (597)
68 3oja_A Leucine-rich immune mol 99.3 1.1E-13 3.7E-18 122.1 -2.8 59 240-301 211-269 (487)
69 1ogq_A PGIP-2, polygalacturona 99.3 4.5E-15 1.6E-19 123.5 -11.1 208 81-309 98-306 (313)
70 2z81_A CD282 antigen, TOLL-lik 99.3 1.1E-11 3.6E-16 111.3 9.1 179 113-311 333-514 (549)
71 3oja_B Anopheles plasmodium-re 99.3 1.3E-13 4.6E-18 124.8 -3.9 65 81-154 120-184 (597)
72 3bz5_A Internalin-J, INLJ; leu 99.3 3.6E-12 1.2E-16 111.4 5.0 201 59-305 44-244 (457)
73 3o53_A Protein LRIM1, AGAP0063 99.2 6.7E-13 2.3E-17 110.6 0.3 197 82-309 56-252 (317)
74 3bz5_A Internalin-J, INLJ; leu 99.2 1.2E-11 4E-16 108.2 7.1 197 59-302 66-262 (457)
75 3m19_A Variable lymphocyte rec 99.2 5.1E-13 1.8E-17 107.5 -1.4 158 114-282 35-192 (251)
76 3o6n_A APL1; leucine-rich repe 99.2 1.1E-12 3.7E-17 112.6 0.3 200 82-305 67-306 (390)
77 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 2.7E-12 9.1E-17 115.5 2.3 182 114-311 331-514 (562)
78 4eco_A Uncharacterized protein 99.2 7.7E-13 2.6E-17 120.5 -1.5 203 82-305 247-468 (636)
79 3oja_A Leucine-rich immune mol 99.2 1.2E-12 4.2E-17 115.3 -0.3 219 57-309 34-252 (487)
80 2z81_A CD282 antigen, TOLL-lik 99.2 6.3E-13 2.1E-17 119.2 -2.7 208 83-305 25-234 (549)
81 4ecn_A Leucine-rich repeat pro 99.2 5.3E-12 1.8E-16 117.8 3.4 181 112-305 489-708 (876)
82 2o6q_A Variable lymphocyte rec 99.2 5.2E-13 1.8E-17 108.7 -3.0 187 114-312 37-223 (270)
83 2ft3_A Biglycan; proteoglycan, 99.2 1E-13 3.5E-18 116.4 -7.7 205 81-305 75-305 (332)
84 1h6t_A Internalin B; cell adhe 99.2 2.9E-11 9.8E-16 99.4 6.7 166 114-305 46-211 (291)
85 2z7x_B TOLL-like receptor 1, v 99.2 2.6E-11 8.8E-16 108.0 6.7 132 164-305 322-455 (520)
86 2je0_A Acidic leucine-rich nuc 99.2 1E-11 3.6E-16 91.4 3.3 106 190-302 40-148 (149)
87 2je0_A Acidic leucine-rich nuc 99.2 1.6E-11 5.4E-16 90.5 3.6 105 164-276 40-148 (149)
88 1m9s_A Internalin B; cell inva 99.1 3.2E-11 1.1E-15 108.7 6.1 166 114-305 43-208 (605)
89 1p9a_G Platelet glycoprotein I 99.1 1.8E-12 6.2E-17 106.5 -2.0 177 111-305 7-183 (290)
90 1io0_A Tropomodulin; LRR prote 99.1 2.9E-09 9.9E-14 81.2 15.9 125 157-285 27-167 (185)
91 1ziw_A TOLL-like receptor 3; i 99.1 2E-12 6.8E-17 119.0 -2.1 62 240-304 533-594 (680)
92 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 5.3E-12 1.8E-16 113.6 0.4 13 82-94 74-86 (562)
93 2ra8_A Uncharacterized protein 99.1 2.1E-10 7.3E-15 96.6 9.9 185 112-305 105-318 (362)
94 2z63_A TOLL-like receptor 4, v 99.1 8.7E-13 3E-17 118.8 -5.4 184 81-279 344-529 (570)
95 2ft3_A Biglycan; proteoglycan, 99.1 1E-12 3.6E-17 110.2 -4.8 201 84-305 54-275 (332)
96 3j0a_A TOLL-like receptor 5; m 99.1 1.3E-12 4.4E-17 122.9 -4.9 87 82-176 71-158 (844)
97 4eco_A Uncharacterized protein 99.1 2.4E-12 8.1E-17 117.3 -3.4 211 81-305 203-444 (636)
98 1io0_A Tropomodulin; LRR prote 99.1 3.8E-09 1.3E-13 80.5 14.8 123 133-259 29-166 (185)
99 3j0a_A TOLL-like receptor 5; m 99.1 3.3E-13 1.1E-17 126.9 -10.2 211 81-305 45-277 (844)
100 2z62_A TOLL-like receptor 4, v 99.1 1.8E-12 6.1E-17 105.8 -4.9 179 114-305 28-211 (276)
101 2ell_A Acidic leucine-rich nuc 99.1 1.3E-11 4.3E-16 92.9 0.0 15 239-253 116-130 (168)
102 2ell_A Acidic leucine-rich nuc 99.1 1E-11 3.6E-16 93.4 -0.5 132 166-305 24-158 (168)
103 4ecn_A Leucine-rich repeat pro 99.1 1.3E-11 4.3E-16 115.3 -0.1 182 110-305 444-655 (876)
104 1xeu_A Internalin C; cellular 99.1 5.9E-11 2E-15 96.0 3.7 142 114-278 41-182 (263)
105 2xwt_C Thyrotropin receptor; s 99.1 5.6E-13 1.9E-17 106.5 -8.1 202 84-305 31-237 (239)
106 3m19_A Variable lymphocyte rec 99.1 1.1E-11 3.9E-16 99.6 -0.6 156 84-254 35-190 (251)
107 2xwt_C Thyrotropin receptor; s 99.1 5.7E-13 1.9E-17 106.4 -8.4 181 114-305 31-216 (239)
108 1fs1_A SKP2 F-BOX, cyclin A/CD 99.1 1.4E-10 4.8E-15 68.7 4.1 48 14-63 6-53 (53)
109 4g8a_A TOLL-like receptor 4; l 99.0 1.6E-12 5.4E-17 118.5 -7.0 166 138-311 418-584 (635)
110 2xot_A Amphoterin-induced prot 99.0 8.8E-12 3E-16 105.7 -2.3 91 216-310 110-205 (361)
111 2v9t_B SLIT homolog 2 protein 99.0 2E-11 6.9E-16 96.0 -1.4 132 140-279 32-163 (220)
112 2v70_A SLIT-2, SLIT homolog 2 99.0 2.3E-11 8E-16 95.7 -1.3 133 140-279 32-164 (220)
113 3e6j_A Variable lymphocyte rec 99.0 3.5E-11 1.2E-15 95.3 -0.3 132 139-279 39-170 (229)
114 2o6s_A Variable lymphocyte rec 99.0 5.7E-11 1.9E-15 92.6 -0.0 133 139-279 27-159 (208)
115 1xeu_A Internalin C; cellular 99.0 3E-10 1E-14 91.8 3.7 144 82-253 39-182 (263)
116 1dce_A Protein (RAB geranylger 98.9 2.4E-11 8.1E-16 108.8 -4.3 124 166-301 441-567 (567)
117 2o6s_A Variable lymphocyte rec 98.9 5.8E-11 2E-15 92.6 -2.6 149 113-278 27-175 (208)
118 1a9n_A U2A', U2A'; complex (nu 98.9 4.8E-10 1.7E-14 84.9 1.7 129 139-278 18-150 (176)
119 2v70_A SLIT-2, SLIT homolog 2 98.8 2.5E-10 8.6E-15 89.7 -1.7 134 114-255 32-165 (220)
120 2wfh_A SLIT homolog 2 protein 98.8 1.2E-09 4E-14 84.0 1.0 107 166-279 31-137 (193)
121 3g06_A SSPH2 (leucine-rich rep 98.8 5.3E-09 1.8E-13 94.5 5.2 75 218-305 221-295 (622)
122 2v9t_B SLIT homolog 2 protein 98.8 5.7E-10 2E-14 87.7 -1.3 136 114-258 32-167 (220)
123 1w8a_A SLIT protein; signaling 98.7 5.3E-10 1.8E-14 85.9 -1.7 109 166-279 29-137 (192)
124 4g8a_A TOLL-like receptor 4; l 98.7 8.9E-10 3E-14 100.3 -1.1 157 140-305 52-212 (635)
125 1a9n_A U2A', U2A'; complex (nu 98.7 2.8E-09 9.6E-14 80.6 1.8 131 112-253 17-150 (176)
126 1dce_A Protein (RAB geranylger 98.7 4E-10 1.4E-14 100.9 -4.4 178 112-306 347-545 (567)
127 1ds9_A Outer arm dynein; leuci 98.7 8.7E-10 3E-14 85.2 -2.0 105 137-253 45-150 (198)
128 3e6j_A Variable lymphocyte rec 98.7 1.8E-09 6.2E-14 85.4 -0.3 132 114-255 40-171 (229)
129 3cvr_A Invasion plasmid antige 98.6 6E-09 2E-13 93.0 1.9 167 83-289 79-250 (571)
130 2xot_A Amphoterin-induced prot 98.6 1.6E-09 5.3E-14 91.9 -2.0 111 190-305 62-174 (361)
131 2o6r_A Variable lymphocyte rec 98.6 2.2E-09 7.6E-14 81.2 -1.1 109 165-279 27-135 (177)
132 3g06_A SSPH2 (leucine-rich rep 98.6 5.7E-08 2E-12 87.8 6.5 125 140-290 181-305 (622)
133 4ay9_X Follicle-stimulating ho 98.6 7.4E-11 2.5E-15 99.6 -11.8 160 137-308 101-260 (350)
134 1ds9_A Outer arm dynein; leuci 98.6 3.4E-09 1.1E-13 81.8 -1.6 104 164-278 46-150 (198)
135 1pgv_A TMD-1, tropomodulin TMD 98.6 2.3E-06 7.7E-11 65.0 13.7 120 157-278 32-167 (197)
136 1jl5_A Outer protein YOPM; leu 98.5 2.9E-08 1E-12 86.6 3.2 73 218-304 215-287 (454)
137 1jl5_A Outer protein YOPM; leu 98.5 1.1E-07 3.7E-12 83.0 6.3 73 192-278 215-287 (454)
138 3sb4_A Hypothetical leucine ri 98.5 1.3E-09 4.5E-14 91.1 -6.0 60 215-278 247-307 (329)
139 3sb4_A Hypothetical leucine ri 98.5 3.1E-08 1.1E-12 82.7 1.5 200 82-304 23-307 (329)
140 1pgv_A TMD-1, tropomodulin TMD 98.5 5.9E-06 2E-10 62.7 13.7 119 133-253 34-167 (197)
141 3g39_A Variable lymphocyte rec 98.4 3.9E-08 1.3E-12 73.8 1.2 83 192-278 30-112 (170)
142 2r9u_A Variable lymphocyte rec 98.4 6.3E-08 2.2E-12 72.9 1.1 84 192-279 33-116 (174)
143 3cvr_A Invasion plasmid antige 98.4 1.1E-07 3.7E-12 85.0 2.6 179 84-306 59-242 (571)
144 2wfh_A SLIT homolog 2 protein 98.3 1.1E-07 3.6E-12 73.0 1.2 108 140-255 31-138 (193)
145 1w8a_A SLIT protein; signaling 98.3 4E-08 1.4E-12 75.3 -1.3 113 140-258 29-141 (192)
146 4b8c_D Glucose-repressible alc 98.3 2.5E-08 8.7E-13 92.0 -3.3 84 191-282 246-329 (727)
147 2o6r_A Variable lymphocyte rec 98.2 1.6E-07 5.6E-12 70.8 0.4 109 139-254 27-135 (177)
148 4b8c_D Glucose-repressible alc 98.2 1.3E-07 4.3E-12 87.4 -0.9 108 188-305 220-327 (727)
149 4ay9_X Follicle-stimulating ho 98.2 2.1E-09 7.3E-14 90.6 -12.3 205 84-305 30-234 (350)
150 3l2o_B F-box only protein 4; s 98.0 1.1E-06 3.9E-11 70.0 1.0 48 20-68 7-54 (312)
151 3g39_A Variable lymphocyte rec 98.0 3.8E-06 1.3E-10 62.8 3.3 84 166-254 30-113 (170)
152 2ifg_A High affinity nerve gro 97.9 1.8E-06 6.2E-11 72.5 0.3 85 190-278 29-113 (347)
153 3rw6_A Nuclear RNA export fact 97.8 6E-05 2.1E-09 60.3 8.1 83 215-301 167-258 (267)
154 2r9u_A Variable lymphocyte rec 97.8 4.2E-06 1.4E-10 62.8 1.1 84 166-254 33-116 (174)
155 2e31_A FBS1, F-box only protei 97.7 1.2E-05 4.1E-10 64.8 1.8 42 20-62 53-95 (297)
156 3v7d_B Cell division control p 97.6 9.3E-06 3.2E-10 70.7 0.5 51 14-64 11-61 (464)
157 3rw6_A Nuclear RNA export fact 97.5 0.00029 1E-08 56.3 7.4 87 185-275 163-258 (267)
158 4fdw_A Leucine rich hypothetic 97.4 4.6E-06 1.6E-10 71.4 -3.9 85 214-304 267-355 (401)
159 4fdw_A Leucine rich hypothetic 97.3 3.3E-06 1.1E-10 72.3 -5.9 151 137-304 177-333 (401)
160 2ifg_A High affinity nerve gro 97.3 2.8E-05 9.4E-10 65.2 -0.6 92 162-258 27-118 (347)
161 1p22_A F-BOX/WD-repeat protein 97.3 3.8E-05 1.3E-09 66.4 0.0 47 17-64 10-60 (435)
162 2ovr_B FBW7, F-BOX/WD repeat p 97.2 0.00011 3.7E-09 63.7 2.4 48 15-63 16-63 (445)
163 4fs7_A Uncharacterized protein 95.7 0.00018 6.2E-09 61.4 -6.1 84 214-304 293-376 (394)
164 4gt6_A Cell surface protein; l 95.1 0.0031 1.1E-07 53.7 -0.5 60 215-278 308-367 (394)
165 4gt6_A Cell surface protein; l 94.0 0.0083 2.8E-07 51.0 -0.3 105 190-305 263-368 (394)
166 4h09_A Hypothetical leucine ri 92.9 0.0067 2.3E-07 51.3 -2.8 82 215-302 260-341 (379)
167 4fs7_A Uncharacterized protein 91.7 0.0074 2.5E-07 51.3 -4.0 79 190-277 160-239 (394)
168 3rfe_A Platelet glycoprotein I 90.6 0.089 3E-06 36.8 1.4 39 243-282 31-69 (130)
169 3rfe_A Platelet glycoprotein I 86.8 0.29 9.8E-06 34.2 1.9 45 218-263 31-75 (130)
170 4h09_A Hypothetical leucine ri 83.8 0.22 7.6E-06 41.8 0.1 84 215-304 237-320 (379)
171 2lz0_A Uncharacterized protein 46.7 5.3 0.00018 26.1 0.5 35 215-251 17-51 (100)
172 2kmz_A Tumor necrosis factor r 25.7 23 0.00078 19.3 0.8 13 300-312 18-30 (53)
No 1
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=100.00 E-value=8.6e-32 Score=227.37 Aligned_cols=275 Identities=20% Similarity=0.283 Sum_probs=196.8
Q ss_pred hcccccccCCchHHHHHHHcCCCccchhHHhhccHHHHHHHccCCCcceeecccccccchhhHHHHh-------------
Q 021374 12 EEEETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAAL------------- 78 (313)
Q Consensus 12 ~~~~~~~~~~~peiL~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------------- 78 (313)
.++..|. .+|+|++.+||+||+.+|+.+++.|||+|+.+. ..|..|+.+++.........+....
T Consensus 4 ~~~~~~~-~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~-~~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~ 81 (336)
T 2ast_B 4 FPGVSWD-SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA-SDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSF 81 (336)
T ss_dssp ---CCSS-SSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHH-TCSTTSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCE
T ss_pred cccCChh-hCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh-cCchhheeeccccccCCHHHHHhhhhccceEEEcCCcc
Confidence 3456784 455589999999999999999999999999985 5699999999987543322211110
Q ss_pred ------hccccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcc
Q 021374 79 ------SIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVR 152 (313)
Q Consensus 79 ------~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 152 (313)
....+++|+.|+++++. +++..+... +..+++|++|+++++ .+++.....+ ..+++|++|++++|..
T Consensus 82 l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~----~~~~~~L~~L~L~~~-~l~~~~~~~l-~~~~~L~~L~L~~~~~ 154 (336)
T 2ast_B 82 MDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGI----LSQCSKLQNLSLEGL-RLSDPIVNTL-AKNSNLVRLNLSGCSG 154 (336)
T ss_dssp ECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHH----HTTBCCCSEEECTTC-BCCHHHHHHH-TTCTTCSEEECTTCBS
T ss_pred ccccchhhccCCCCCEEEccCCC-cCHHHHHHH----HhhCCCCCEEeCcCc-ccCHHHHHHH-hcCCCCCEEECCCCCC
Confidence 01124667777777753 444434433 345588888888886 5565555555 4478888888888766
Q ss_pred cCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCC-CCcEEecCCCC-CCCHHHHHHHHhhCCCCCEEEeCCCCC
Q 021374 153 VTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ-ELESLNLTRCV-KLTDGGLQKILIKCSSLRSLNLYALSG 230 (313)
Q Consensus 153 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~-~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~ 230 (313)
+++.++......+++|++|++++|..+++..+......++ +|++|++++|. .+++..+...+..+++|+.|+++++..
T Consensus 155 l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 234 (336)
T 2ast_B 155 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 234 (336)
T ss_dssp CCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT
T ss_pred CCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc
Confidence 7777777767778888888888875677666666666788 88888888864 566667777777888888888888655
Q ss_pred CCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCcc
Q 021374 231 FTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLE 297 (313)
Q Consensus 231 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 297 (313)
+++..+..+..+++|++|++++|..+++.++..+.++++|++|++++| +++.++..+.+.+|+|+
T Consensus 235 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--i~~~~~~~l~~~l~~L~ 299 (336)
T 2ast_B 235 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQ 299 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--SCTTCHHHHHHHSTTSE
T ss_pred CCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc--cCHHHHHHHHhhCcceE
Confidence 776667777778888888888887677766666777888888888877 77777777765566555
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=4.2e-26 Score=206.84 Aligned_cols=270 Identities=20% Similarity=0.243 Sum_probs=149.1
Q ss_pred ccccCCchHHHHHHHcCCC-ccchhHHhhccHHHHHHHccCCCcceeecccccccchhhHHHHhhccccCCcCeeeccCC
Q 021374 16 TWSKETVPKVIRIMSTRLS-QRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFA 94 (313)
Q Consensus 16 ~~~~~~~peiL~~If~~L~-~~~l~~~~~v~~~w~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~ 94 (313)
.|. .+|+|+|.+||+||+ .+|+.+++.|||+|+.+ ....|..+++......... ....++++|+.++++++
T Consensus 5 ~~~-~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~---~~~~~~~l~~~~~~~~~~~----~~~~~~~~L~~L~L~~~ 76 (594)
T 2p1m_B 5 IAL-SFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI---ERWCRRKVFIGNCYAVSPA----TVIRRFPKVRSVELKGK 76 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH---HHHHCCEEEESSTTSSCHH----HHHHHCTTCCEEEEECS
T ss_pred chh-hCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh---hhhhceEEeeccccccCHH----HHHhhCCCceEEeccCC
Confidence 453 444479999999999 99999999999999987 2334555555443222111 11223455666665554
Q ss_pred ccCchH-------------HHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHH
Q 021374 95 QDIEDR-------------HLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 161 (313)
Q Consensus 95 ~~~~~~-------------~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 161 (313)
..+.+. .+..+.. .+++|++|+++++ .+++..+..+...+++|++|++.+|..+++.++..+
T Consensus 77 ~~~~~~~l~~~~~~~~~~~~l~~l~~----~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~ 151 (594)
T 2p1m_B 77 PHFADFNLVPDGWGGYVYPWIEAMSS----SYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAI 151 (594)
T ss_dssp CGGGGGTCSCTTSCCBCHHHHHHHHH----HCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHH
T ss_pred CchhhcccccccccchhhHHHHHHHH----hCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHH
Confidence 322111 1122222 2355666666554 345555555544555666666655545555555555
Q ss_pred HhcCCCCcEEeccCCc-----------------------------ccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHH
Q 021374 162 VKNCKHIIDLNLSGCK-----------------------------NLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQK 212 (313)
Q Consensus 162 ~~~~~~L~~L~l~~~~-----------------------------~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 212 (313)
...+++|++|++++|. .+++..+..+...+++|++|++.+|..+ .++..
T Consensus 152 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~--~~l~~ 229 (594)
T 2p1m_B 152 AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL--EKLAT 229 (594)
T ss_dssp HHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH--HHHHH
T ss_pred HHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH--HHHHH
Confidence 5455555555555542 2333444444444555555555554222 22444
Q ss_pred HHhhCCCCCEEEeCCCCC-CC---------------------------HHHHHH-hhcCCCCCEEecCCCCCCChHHHHH
Q 021374 213 ILIKCSSLRSLNLYALSG-FT---------------------------DEAYKK-ISLLAHLKFLDLCGAQNLSDEGLAC 263 (313)
Q Consensus 213 ~~~~~~~L~~L~l~~~~~-~~---------------------------~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~ 263 (313)
++..+++|+.|.++.+.. +. ...+.. +..+++|++|++++|. +++.++..
T Consensus 230 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~ 308 (594)
T 2p1m_B 230 LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVK 308 (594)
T ss_dssp HHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHH
T ss_pred HHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHH
Confidence 445555555555433211 11 111111 1145778888888884 77766555
Q ss_pred -hhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCC
Q 021374 264 -IAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGA 303 (313)
Q Consensus 264 -l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 303 (313)
+.++++|++|++.+| +++.++..+...+++|+.|++.+
T Consensus 309 ~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~ 347 (594)
T 2p1m_B 309 LLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFP 347 (594)
T ss_dssp HHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEEC
T ss_pred HHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEec
Confidence 346888888888876 66777777777788888888844
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.92 E-value=4.8e-24 Score=193.29 Aligned_cols=31 Identities=29% Similarity=0.238 Sum_probs=28.2
Q ss_pred CchHHHHHHHcCC-CccchhHHhhccHHHHHH
Q 021374 21 TVPKVIRIMSTRL-SQRDIISLLLVSPWLHRT 51 (313)
Q Consensus 21 ~~peiL~~If~~L-~~~~l~~~~~v~~~w~~~ 51 (313)
+|+|+|.+||+|| +.+|+.+++.|||+|+.+
T Consensus 16 LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 16 TVDDVIEQVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred CCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 4447999999999 899999999999999987
No 4
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=2.3e-20 Score=157.26 Aligned_cols=189 Identities=22% Similarity=0.332 Sum_probs=161.1
Q ss_pred CCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhC
Q 021374 112 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY 191 (313)
Q Consensus 112 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 191 (313)
.+++|++|+++++ .++...+......+++|++|+++++ .+++.....+. .+++|++|++++|..+++..+..+...+
T Consensus 91 ~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~ 167 (336)
T 2ast_B 91 SPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSC 167 (336)
T ss_dssp CCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred cCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcC
Confidence 5689999999997 5677767777789999999999999 78877776664 5999999999998778887788877889
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhhCC-CCCEEEeCCCC-CCCHHHH-HHhhcCCCCCEEecCCCCCCChHHHHHhhCCC
Q 021374 192 QELESLNLTRCVKLTDGGLQKILIKCS-SLRSLNLYALS-GFTDEAY-KKISLLAHLKFLDLCGAQNLSDEGLACIAKCK 268 (313)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~-~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 268 (313)
++|++|++++|..+++.++...+..++ +|+.|+++++. .+++..+ ..+..+++|++|++++|..+++..+..+.+++
T Consensus 168 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~ 247 (336)
T 2ast_B 168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 247 (336)
T ss_dssp TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCC
Confidence 999999999976888877888889999 99999999975 5665444 45568999999999999668888888888999
Q ss_pred CCceeeccCCCCCChHHHHHHHHhCCCccEeecCCc
Q 021374 269 NLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAE 304 (313)
Q Consensus 269 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 304 (313)
+|++|++++|..+++.++..+. .+++|+.|++++|
T Consensus 248 ~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~ 282 (336)
T 2ast_B 248 YLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI 282 (336)
T ss_dssp TCCEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTS
T ss_pred CCCEeeCCCCCCCCHHHHHHHh-cCCCCCEEeccCc
Confidence 9999999999888888775554 6999999999987
No 5
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=8.6e-20 Score=165.36 Aligned_cols=214 Identities=25% Similarity=0.412 Sum_probs=179.6
Q ss_pred ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecC----------Cc
Q 021374 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYW----------NV 151 (313)
Q Consensus 82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~----------~~ 151 (313)
.+++|++|+++++. +++..+..+ +..+++|+.|++.. .+.+..+..+...+++|++|+++. +.
T Consensus 291 ~~~~L~~L~Ls~~~-l~~~~~~~~----~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~ 363 (592)
T 3ogk_B 291 FAAQIRKLDLLYAL-LETEDHCTL----IQKCPNLEVLETRN--VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEG 363 (592)
T ss_dssp GGGGCCEEEETTCC-CCHHHHHHH----HTTCTTCCEEEEEG--GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTC
T ss_pred hcCCCcEEecCCCc-CCHHHHHHH----HHhCcCCCEEeccC--ccCHHHHHHHHHhCCCCCEEEeecCccccccccccC
Confidence 46789999999876 666666554 35669999999984 577788888888999999999994 66
Q ss_pred ccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCC---CCCCCH----HHHHHHHhhCCCCCEEE
Q 021374 152 RVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR---CVKLTD----GGLQKILIKCSSLRSLN 224 (313)
Q Consensus 152 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~---~~~~~~----~~~~~~~~~~~~L~~L~ 224 (313)
.+++.++..+...+++|++|++. |..+++..+..+...+++|+.|++.+ |+.+++ .++..++.++++|+.|+
T Consensus 364 ~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~ 442 (592)
T 3ogk_B 364 LVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA 442 (592)
T ss_dssp CCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred ccCHHHHHHHHhhCccCeEEEee-cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEE
Confidence 89999998888889999999994 46888988988888899999999973 456665 57888889999999999
Q ss_pred eCCCC-CCCHHHHHHhh-cCCCCCEEecCCCCCCChHHHHHh-hCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeec
Q 021374 225 LYALS-GFTDEAYKKIS-LLAHLKFLDLCGAQNLSDEGLACI-AKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSS 301 (313)
Q Consensus 225 l~~~~-~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l 301 (313)
+++|. .+++..+..++ .+++|++|++++| .+++.++..+ ..+++|++|++++| .+++.++..+...+++|+.|++
T Consensus 443 L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l 520 (592)
T 3ogk_B 443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGC-CFSERAIAAAVTKLPSLRYLWV 520 (592)
T ss_dssp EECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESC-CCBHHHHHHHHHHCSSCCEEEE
T ss_pred EecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCC-CCcHHHHHHHHHhcCccCeeEC
Confidence 98754 37888888776 5899999999998 6888776655 57999999999999 4899999999889999999999
Q ss_pred CCcc
Q 021374 302 GAEM 305 (313)
Q Consensus 302 ~~~~ 305 (313)
++|.
T Consensus 521 s~n~ 524 (592)
T 3ogk_B 521 QGYR 524 (592)
T ss_dssp ESCB
T ss_pred cCCc
Confidence 9886
No 6
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.85 E-value=4.7e-20 Score=167.13 Aligned_cols=213 Identities=24% Similarity=0.355 Sum_probs=165.5
Q ss_pred ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEe--------cCCccc
Q 021374 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSI--------YWNVRV 153 (313)
Q Consensus 82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l--------~~~~~~ 153 (313)
.+++|++|+++++. +++..+..+. ..+++|+.|++.++ +++..+..+...+++|++|++ .++..+
T Consensus 287 ~~~~L~~L~L~~~~-l~~~~l~~~~----~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l 359 (594)
T 2p1m_B 287 VCSRLTTLNLSYAT-VQSYDLVKLL----CQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL 359 (594)
T ss_dssp HHTTCCEEECTTCC-CCHHHHHHHH----TTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCC
T ss_pred hhCCCCEEEccCCC-CCHHHHHHHH----hcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCC
Confidence 46788999998876 7666655553 45588999998875 566777777777889999988 334578
Q ss_pred CHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecC-----CCCCCC----HHHHHHHHhhCCCCCEEE
Q 021374 154 TDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLT-----RCVKLT----DGGLQKILIKCSSLRSLN 224 (313)
Q Consensus 154 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~-----~~~~~~----~~~~~~~~~~~~~L~~L~ 224 (313)
++.++..+...+++|++|.+.. ..+++..+..+...+++|+.|++. +|+.++ +.++..++..+++|+.|+
T Consensus 360 ~~~~l~~l~~~~~~L~~L~~~~-~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~ 438 (594)
T 2p1m_B 360 TEQGLVSVSMGCPKLESVLYFC-RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLS 438 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEEE-SCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEE
T ss_pred CHHHHHHHHHhchhHHHHHHhc-CCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEe
Confidence 8888888877788899886544 578888888887778889999888 566777 677777788888899888
Q ss_pred eCCCCCCCHHHHHHhhc-CCCCCEEecCCCCCCChHHHHHh-hCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecC
Q 021374 225 LYALSGFTDEAYKKISL-LAHLKFLDLCGAQNLSDEGLACI-AKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSG 302 (313)
Q Consensus 225 l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~ 302 (313)
+++ .+++..+..++. +++|++|++++| .+++.++..+ ..+++|++|++++| .+++.++..+...+++|+.|+++
T Consensus 439 L~~--~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n-~~~~~~~~~~~~~l~~L~~L~l~ 514 (594)
T 2p1m_B 439 LSG--LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDC-PFGDKALLANASKLETMRSLWMS 514 (594)
T ss_dssp CCS--SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESC-SCCHHHHHHTGGGGGGSSEEEEE
T ss_pred ecC--cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCC-CCcHHHHHHHHHhCCCCCEEeee
Confidence 865 677777777775 888888888888 5777777666 45888888888888 56888887777778888888888
Q ss_pred Cccc
Q 021374 303 AEMN 306 (313)
Q Consensus 303 ~~~~ 306 (313)
+|..
T Consensus 515 ~~~~ 518 (594)
T 2p1m_B 515 SCSV 518 (594)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8753
No 7
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.80 E-value=6.3e-17 Score=138.86 Aligned_cols=240 Identities=18% Similarity=0.165 Sum_probs=168.2
Q ss_pred ceeecccccccchhhHHHHh--hccccCCcCeeeccCCc--cCch---HHHHHHHHHhcCCCCCCcEEecCCCCCCChHH
Q 021374 59 WLVIDLREMNNAGNRLVAAL--SIPRYRHVREINLEFAQ--DIED---RHLELLKTKCLGSLQDLESLNLNGCQKISDKG 131 (313)
Q Consensus 59 ~~~l~~~~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~--~~~~---~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~ 131 (313)
.+.+++.+...... ....+ .+..+++|+.|+++++. .++. ..+..+... +..+++|++|+++++ .++..+
T Consensus 34 L~~L~L~~n~i~~~-~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~-l~~~~~L~~L~Ls~n-~l~~~~ 110 (386)
T 2ca6_A 34 VKEIVLSGNTIGTE-AARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA-LLKCPKLHTVRLSDN-AFGPTA 110 (386)
T ss_dssp CCEEECTTSEECHH-HHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH-HTTCTTCCEEECCSC-CCCTTT
T ss_pred ccEEECCCCCCCHH-HHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH-HhhCCcccEEECCCC-cCCHHH
Confidence 47888877643322 12222 24468999999998862 2322 234344332 467899999999996 555532
Q ss_pred ---HHHHHhcCCCCcEEEecCCcccCHHHHHHHHh---cC---------CCCcEEeccCCcccchHHHHH---HHHhCCC
Q 021374 132 ---IEIISSTCPELKVFSIYWNVRVTDIGIQHLVK---NC---------KHIIDLNLSGCKNLLDKSLQL---IADNYQE 193 (313)
Q Consensus 132 ---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~---------~~L~~L~l~~~~~~~~~~l~~---l~~~~~~ 193 (313)
+......+++|++|+|++| .++..+...+.. .+ ++|++|+++++ .+++..+.. ....+++
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~ 188 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRL 188 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHHHHhCCC
Confidence 3334477899999999998 776555444332 33 89999999996 566555553 3346899
Q ss_pred CcEEecCCCCCCCHHHHHHHH----hhCCCCCEEEeCCCCCCCHH----HHHHhhcCCCCCEEecCCCCCCChHHHHH--
Q 021374 194 LESLNLTRCVKLTDGGLQKIL----IKCSSLRSLNLYALSGFTDE----AYKKISLLAHLKFLDLCGAQNLSDEGLAC-- 263 (313)
Q Consensus 194 L~~L~l~~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-- 263 (313)
|++|++++| .+.+.++..+. ..+++|+.|+++++ .+++. ....+..+++|++|++++| .+++.+...
T Consensus 189 L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~ 265 (386)
T 2ca6_A 189 LHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDC-LLSARGAAAVV 265 (386)
T ss_dssp CCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTC-CCCHHHHHHHH
T ss_pred cCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCC-CCchhhHHHHH
Confidence 999999995 78877755443 47899999999985 56643 3345668999999999999 688775443
Q ss_pred --hhC--CCCCceeeccCCCCCChHHHHHHH----HhCCCccEeecCCcccc
Q 021374 264 --IAK--CKNLVSLNLTWCVRITDVGVMAIA----EGCSSLEFLSSGAEMNC 307 (313)
Q Consensus 264 --l~~--~~~L~~L~l~~~~~~~~~~~~~l~----~~~~~L~~L~l~~~~~~ 307 (313)
+.. +++|++|++++| .+++.++..+. ..+|+|+.|++++|.-.
T Consensus 266 ~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 323 899999999999 88886544433 45799999999998644
No 8
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.78 E-value=6.9e-17 Score=138.61 Aligned_cols=217 Identities=20% Similarity=0.271 Sum_probs=160.5
Q ss_pred ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCC--CCCh---HHHHHH---HhcCCCCcEEEecCCccc
Q 021374 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQ--KISD---KGIEII---SSTCPELKVFSIYWNVRV 153 (313)
Q Consensus 82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~--~~~~---~~~~~~---~~~~~~L~~L~l~~~~~~ 153 (313)
.+++|+.|+++++ .++......+... +..+++|+.|+++++. .++. ..+..+ ...+++|++|+|+++ .+
T Consensus 30 ~~~~L~~L~L~~n-~i~~~~~~~l~~~-l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l 106 (386)
T 2ca6_A 30 EDDSVKEIVLSGN-TIGTEAARWLSEN-IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AF 106 (386)
T ss_dssp HCSCCCEEECTTS-EECHHHHHHHHHT-TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CC
T ss_pred cCCCccEEECCCC-CCCHHHHHHHHHH-HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cC
Confidence 5688999999986 5666655555433 4678999999999862 2222 233222 356899999999998 67
Q ss_pred CHHH---HHHHHhcCCCCcEEeccCCcccchHHHHHHHH---hC---------CCCcEEecCCCCCCCHHHHH---HHHh
Q 021374 154 TDIG---IQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD---NY---------QELESLNLTRCVKLTDGGLQ---KILI 215 (313)
Q Consensus 154 ~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~---~~---------~~L~~L~l~~~~~~~~~~~~---~~~~ 215 (313)
+..+ +......+++|++|++++| .+++.....+.. .+ ++|++|+++++ .+.+.++. ..+.
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQ 184 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHHHH
Confidence 6643 3344567899999999997 566555444443 23 89999999994 67655555 4566
Q ss_pred hCCCCCEEEeCCCCCCCHHHH----H-HhhcCCCCCEEecCCCCCCChHHH----HHhhCCCCCceeeccCCCCCChHHH
Q 021374 216 KCSSLRSLNLYALSGFTDEAY----K-KISLLAHLKFLDLCGAQNLSDEGL----ACIAKCKNLVSLNLTWCVRITDVGV 286 (313)
Q Consensus 216 ~~~~L~~L~l~~~~~~~~~~~----~-~l~~~~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~ 286 (313)
.+++|+.|+++++ .+.+.+. . .+..+++|++|+|++| .+++.+. ..+..+++|++|++++| .+++.+.
T Consensus 185 ~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~ 261 (386)
T 2ca6_A 185 SHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDC-LLSARGA 261 (386)
T ss_dssp HCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTC-CCCHHHH
T ss_pred hCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCC-CCchhhH
Confidence 8899999999995 6776543 2 4568999999999999 6875443 34567899999999999 8998877
Q ss_pred HHHHHh-----CCCccEeecCCccc
Q 021374 287 MAIAEG-----CSSLEFLSSGAEMN 306 (313)
Q Consensus 287 ~~l~~~-----~~~L~~L~l~~~~~ 306 (313)
..+... +++|+.|++++|.-
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i 286 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEI 286 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred HHHHHHHhhccCCCeEEEECcCCcC
Confidence 666543 78999999999853
No 9
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.78 E-value=1.8e-16 Score=139.19 Aligned_cols=215 Identities=20% Similarity=0.261 Sum_probs=112.5
Q ss_pred cCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHH---HHHHHhcCCCCcEEEecCCcccCHHHHH
Q 021374 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKG---IEIISSTCPELKVFSIYWNVRVTDIGIQ 159 (313)
Q Consensus 83 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 159 (313)
+++|+.|+++++. +++.....+........++|+.|+++++ .++..+ +......+++|++|+++++ .+++.++.
T Consensus 169 ~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~ 245 (461)
T 1z7x_W 169 KPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMA 245 (461)
T ss_dssp CTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHH
T ss_pred CCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHH
Confidence 3555555555542 4444444443332223346666666665 333332 2222344566666666666 55555444
Q ss_pred HHHh----cCCCCcEEeccCCcccchHHHHHH---HHhCCCCcEEecCCCCCCCHHHHHHHHhh----CCCCCEEEeCCC
Q 021374 160 HLVK----NCKHIIDLNLSGCKNLLDKSLQLI---ADNYQELESLNLTRCVKLTDGGLQKILIK----CSSLRSLNLYAL 228 (313)
Q Consensus 160 ~~~~----~~~~L~~L~l~~~~~~~~~~l~~l---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~ 228 (313)
.+.. .+++|++|++++| .+++.+...+ ...+++|++|+++++ .+.+.+...+... .++|+.|+++++
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 3332 3566666666665 4555442222 223566666666663 4554444333222 246666666664
Q ss_pred CCCCHHH----HHHhhcCCCCCEEecCCCCCCChHHHHHhhC-----CCCCceeeccCCCCCChHHHHHHH---HhCCCc
Q 021374 229 SGFTDEA----YKKISLLAHLKFLDLCGAQNLSDEGLACIAK-----CKNLVSLNLTWCVRITDVGVMAIA---EGCSSL 296 (313)
Q Consensus 229 ~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L 296 (313)
.+++.. ...+..+++|++|++++| .+++.+...+.. .++|++|++++| .+++.++..+. ..+++|
T Consensus 324 -~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L 400 (461)
T 1z7x_W 324 -SFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSL 400 (461)
T ss_dssp -CCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCC
T ss_pred -CCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCc
Confidence 344332 223345567777777776 566655544432 567777777776 66665443333 346777
Q ss_pred cEeecCCcc
Q 021374 297 EFLSSGAEM 305 (313)
Q Consensus 297 ~~L~l~~~~ 305 (313)
+.|++++|.
T Consensus 401 ~~L~l~~N~ 409 (461)
T 1z7x_W 401 RELDLSNNC 409 (461)
T ss_dssp CEEECCSSS
T ss_pred cEEECCCCC
Confidence 777777664
No 10
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.77 E-value=7.9e-17 Score=141.49 Aligned_cols=247 Identities=20% Similarity=0.258 Sum_probs=172.6
Q ss_pred HHHHHccCCCcceeecccccccchh---hHHHHhhccccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCC
Q 021374 48 LHRTLVSYPSLWLVIDLREMNNAGN---RLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGC 124 (313)
Q Consensus 48 w~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~ 124 (313)
|...+...+. .+.+++........ .+... ...+++|++|+++++ .+++.....+........++|++|+++++
T Consensus 20 ~~~~~~~~~~-L~~L~L~~~~l~~~~~~~l~~~--l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n 95 (461)
T 1z7x_W 20 WAELLPLLQQ-CQVVRLDDCGLTEARCKDISSA--LRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNC 95 (461)
T ss_dssp HHHHHHHHTT-CSEEEEESSCCCHHHHHHHHHH--HHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTS
T ss_pred HHHHHhhcCC-ccEEEccCCCCCHHHHHHHHHH--HHhCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccCC
Confidence 4443333343 37788776653322 12222 235689999999986 46666666665543222227999999997
Q ss_pred CCCChHH---HHHHHhcCCCCcEEEecCCcccCHHHHHHHHhc----CCCCcEEeccCCcccchHHH---HHHHHhCCCC
Q 021374 125 QKISDKG---IEIISSTCPELKVFSIYWNVRVTDIGIQHLVKN----CKHIIDLNLSGCKNLLDKSL---QLIADNYQEL 194 (313)
Q Consensus 125 ~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~l---~~l~~~~~~L 194 (313)
.+++.+ +......+++|++|+++++ .+++.++..+... .++|++|++++| .+++... ......+++|
T Consensus 96 -~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L 172 (461)
T 1z7x_W 96 -CLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDF 172 (461)
T ss_dssp -CCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTC
T ss_pred -CCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCC
Confidence 566543 3444467889999999998 6887777666543 457999999997 5665443 3334458999
Q ss_pred cEEecCCCCCCCHHHHHHHHh----hCCCCCEEEeCCCCCCCHHH----HHHhhcCCCCCEEecCCCCCCChHHHHHhh-
Q 021374 195 ESLNLTRCVKLTDGGLQKILI----KCSSLRSLNLYALSGFTDEA----YKKISLLAHLKFLDLCGAQNLSDEGLACIA- 265 (313)
Q Consensus 195 ~~L~l~~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~- 265 (313)
++|+++++ .+.+.++..+.. ..++|+.|+++++ .+++.. ...+..+++|++|++++| .+++.++..+.
T Consensus 173 ~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~ 249 (461)
T 1z7x_W 173 KELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCP 249 (461)
T ss_dssp CEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHH
T ss_pred CEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHH
Confidence 99999995 577766655544 3569999999996 565543 444567899999999999 78877655543
Q ss_pred ----CCCCCceeeccCCCCCChHHHHHH---HHhCCCccEeecCCcc
Q 021374 266 ----KCKNLVSLNLTWCVRITDVGVMAI---AEGCSSLEFLSSGAEM 305 (313)
Q Consensus 266 ----~~~~L~~L~l~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~ 305 (313)
.+++|++|++++| .+++.++..+ ...+++|+.|++++|.
T Consensus 250 ~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 250 GLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp HHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred HHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 4899999999999 8998875444 4468999999999885
No 11
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.67 E-value=9e-16 Score=130.47 Aligned_cols=244 Identities=23% Similarity=0.230 Sum_probs=160.3
Q ss_pred cCCCcceeecccccccchh---hHHHHhhccccC-CcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCCh
Q 021374 54 SYPSLWLVIDLREMNNAGN---RLVAALSIPRYR-HVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISD 129 (313)
Q Consensus 54 ~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~-~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~ 129 (313)
..+...+.+++++...... .+...+ ...+ +|++|+++++ .+++.....+........++|+.|+++++ .+++
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l--~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~ 94 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAF--ANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGN-FLSY 94 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHH--HTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGG
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHH--HhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCC-cCCh
Confidence 4455568888887654322 122233 2456 8999999986 46554444444332222389999999997 4444
Q ss_pred HHH---HHHHhcC-CCCcEEEecCCcccCHHHHHHHH---hc-CCCCcEEeccCCcccchHHHHHHH---HhCC-CCcEE
Q 021374 130 KGI---EIISSTC-PELKVFSIYWNVRVTDIGIQHLV---KN-CKHIIDLNLSGCKNLLDKSLQLIA---DNYQ-ELESL 197 (313)
Q Consensus 130 ~~~---~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~---~~-~~~L~~L~l~~~~~~~~~~l~~l~---~~~~-~L~~L 197 (313)
... ......+ ++|++|+++++ .+++.+...+. .. +++|++|+++++ .+++.+...+. ...+ +|++|
T Consensus 95 ~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L 172 (362)
T 3goz_A 95 KSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSL 172 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred HHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEe
Confidence 333 3333445 79999999988 66665554443 33 469999999996 56654443332 3344 99999
Q ss_pred ecCCCCCCCH---HHHHHHHhhC-CCCCEEEeCCCCCCCHHHHH----Hhhc-CCCCCEEecCCCCCCChHHHHHh----
Q 021374 198 NLTRCVKLTD---GGLQKILIKC-SSLRSLNLYALSGFTDEAYK----KISL-LAHLKFLDLCGAQNLSDEGLACI---- 264 (313)
Q Consensus 198 ~l~~~~~~~~---~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~----~l~~-~~~L~~L~l~~~~~~~~~~~~~l---- 264 (313)
++++| .+.+ ..+...+..+ ++|+.|+++++ .+.+.+.. .+.. .++|++|++++| .+++.+...+
T Consensus 173 ~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~ 249 (362)
T 3goz_A 173 NLRGN-NLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLK 249 (362)
T ss_dssp ECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTT
T ss_pred eecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHH
Confidence 99995 5544 3344455666 59999999985 56553333 3444 469999999999 6776544333
Q ss_pred hCCCCCceeeccCCC--CCChHHHHHHHHhC---CCccEeecCCccc
Q 021374 265 AKCKNLVSLNLTWCV--RITDVGVMAIAEGC---SSLEFLSSGAEMN 306 (313)
Q Consensus 265 ~~~~~L~~L~l~~~~--~~~~~~~~~l~~~~---~~L~~L~l~~~~~ 306 (313)
..+++|++|++++|. .+++.++..+...+ ++|+.|++++|.-
T Consensus 250 ~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 250 DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp TTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred hcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 457899999999883 37888887777655 4677888988753
No 12
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.66 E-value=4.3e-15 Score=126.24 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=15.9
Q ss_pred CCCceeeccCCCCCChHHH---HHHHHhCCCccEeecCCc
Q 021374 268 KNLVSLNLTWCVRITDVGV---MAIAEGCSSLEFLSSGAE 304 (313)
Q Consensus 268 ~~L~~L~l~~~~~~~~~~~---~~l~~~~~~L~~L~l~~~ 304 (313)
++|++|++++| .+++.+. ..+...+++|+.|++++|
T Consensus 225 ~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 225 NHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp TTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred CCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence 35555555554 4444322 222233445555555444
No 13
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.58 E-value=9e-14 Score=118.08 Aligned_cols=175 Identities=20% Similarity=0.269 Sum_probs=92.7
Q ss_pred CCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHh
Q 021374 84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK 163 (313)
Q Consensus 84 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 163 (313)
++++.|+++++ .+++.....+.........+|+.|+|+++ .+++.++..+...+++|++|+|++| .+++.+...+..
T Consensus 72 ~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~ 148 (372)
T 3un9_A 72 SSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRD 148 (372)
T ss_dssp TTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHH
T ss_pred hhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHH
Confidence 55666666664 35554444444432223346666666664 4555555555555556666666666 666555444432
Q ss_pred ----cCCCCcEEeccCCcccchHHHHHHH---HhCCCCcEEecCCCCCCCHHHHHHH---HhhCCCCCEEEeCCCCCCCH
Q 021374 164 ----NCKHIIDLNLSGCKNLLDKSLQLIA---DNYQELESLNLTRCVKLTDGGLQKI---LIKCSSLRSLNLYALSGFTD 233 (313)
Q Consensus 164 ----~~~~L~~L~l~~~~~~~~~~l~~l~---~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~ 233 (313)
..++|++|++++| .+++.+...+. ...++|++|++++ +.+.+.++..+ +...++|+.|+++++ .+++
T Consensus 149 ~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~-N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~ 225 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLH-TGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGD 225 (372)
T ss_dssp HHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTT-SSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCH
T ss_pred HHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCC-CCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCH
Confidence 2355666666664 45554444332 2345666666666 34555443332 234455666666653 4555
Q ss_pred HHHHHhh----cCCCCCEEecCCCCCCChHHHHHhh
Q 021374 234 EAYKKIS----LLAHLKFLDLCGAQNLSDEGLACIA 265 (313)
Q Consensus 234 ~~~~~l~----~~~~L~~L~l~~~~~~~~~~~~~l~ 265 (313)
.+...+. ..++|++|+|++| .+++.+...+.
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~ 260 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFN-ELSSEGRQVLR 260 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTS-SCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEeccCC-CCCHHHHHHHH
Confidence 4433332 3456666666666 45555555544
No 14
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.58 E-value=4.7e-15 Score=110.53 Aligned_cols=104 Identities=17% Similarity=0.280 Sum_probs=81.7
Q ss_pred CCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcC----CCCCEEecCCCCCCChHHHHHhhCCC
Q 021374 193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL----AHLKFLDLCGAQNLSDEGLACIAKCK 268 (313)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~----~~L~~L~l~~~~~~~~~~~~~l~~~~ 268 (313)
+|++|++++|. +++.++..+ ..|++|++|++++|..+++.++..++.+ ++|++|+|++|..+||.++..+.+++
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred eEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 57777777764 777666654 6778888888888877888888887764 57899999998889999888888899
Q ss_pred CCceeeccCCCCCChHH--HHHHHHhCCCccE
Q 021374 269 NLVSLNLTWCVRITDVG--VMAIAEGCSSLEF 298 (313)
Q Consensus 269 ~L~~L~l~~~~~~~~~~--~~~l~~~~~~L~~ 298 (313)
+|++|++++|+.+++.+ ...+.+..|+++.
T Consensus 140 ~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp TCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred CCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 99999999998898876 5566677887654
No 15
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.58 E-value=6.4e-17 Score=133.00 Aligned_cols=212 Identities=14% Similarity=0.117 Sum_probs=143.5
Q ss_pred cCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHH
Q 021374 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV 162 (313)
Q Consensus 83 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 162 (313)
.++++.|+++++. ++... ...+..+++|+.|+++++ .++..... ....+++|++|+++++..+..... ...
T Consensus 31 ~~~l~~L~l~~n~-i~~~~-----~~~~~~~~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~-~~~ 101 (285)
T 1ozn_A 31 PAASQRIFLHGNR-ISHVP-----AASFRACRNLTILWLHSN-VLARIDAA-AFTGLALLEQLDLSDNAQLRSVDP-ATF 101 (285)
T ss_dssp CTTCSEEECTTSC-CCEEC-----TTTTTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSCTTCCCCCT-TTT
T ss_pred CCCceEEEeeCCc-CCccC-----HHHcccCCCCCEEECCCC-ccceeCHh-hcCCccCCCEEeCCCCCCccccCH-HHh
Confidence 4688999998753 33311 112456789999999886 44433222 225678999999998742443211 123
Q ss_pred hcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcC
Q 021374 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL 242 (313)
Q Consensus 163 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 242 (313)
..+++|++|+++++ .++... ......+++|++|+++++ .+.... ...+..+++|+.|+++++ .++......+..+
T Consensus 102 ~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l 176 (285)
T 1ozn_A 102 HGLGRLHTLHLDRC-GLQELG-PGLFRGLAALQYLYLQDN-ALQALP-DDTFRDLGNLTHLFLHGN-RISSVPERAFRGL 176 (285)
T ss_dssp TTCTTCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCEECTTTTTTC
T ss_pred cCCcCCCEEECCCC-cCCEEC-HhHhhCCcCCCEEECCCC-cccccC-HhHhccCCCccEEECCCC-cccccCHHHhcCc
Confidence 46789999999986 343321 122234789999999984 444311 122467889999999984 5554434456778
Q ss_pred CCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcccccccc
Q 021374 243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCSCS 311 (313)
Q Consensus 243 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 311 (313)
++|++|++++| .++......+.++++|++|++++| .++..... .+..+++|+.|++++|.--|.|+
T Consensus 177 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 177 HSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTE-ALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCHH-HHTTCTTCCEEECCSSCEECSGG
T ss_pred cccCEEECCCC-cccccCHhHccCcccccEeeCCCC-cCCcCCHH-HcccCcccCEEeccCCCccCCCC
Confidence 99999999998 566654556778899999999998 67664443 34478999999999998777775
No 16
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.57 E-value=4.3e-14 Score=119.42 Aligned_cols=195 Identities=21% Similarity=0.270 Sum_probs=90.5
Q ss_pred cccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHH--
Q 021374 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGI-- 158 (313)
Q Consensus 81 ~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-- 158 (313)
..+++|+.|+++++........ +..+++|+.|+++++....... ...+++|++|+++++ .+.+...
T Consensus 129 ~~l~~L~~L~l~~n~~~~~~~~-------~~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n-~l~~~~~~~ 196 (347)
T 4fmz_A 129 ANLTKMYSLNLGANHNLSDLSP-------LSNMTGLNYLTVTESKVKDVTP----IANLTDLYSLSLNYN-QIEDISPLA 196 (347)
T ss_dssp TTCTTCCEEECTTCTTCCCCGG-------GTTCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECTTS-CCCCCGGGG
T ss_pred ccCCceeEEECCCCCCcccccc-------hhhCCCCcEEEecCCCcCCchh----hccCCCCCEEEccCC-ccccccccc
Confidence 3567788888877643332111 2455667777776653222221 245666666666655 3322111
Q ss_pred ------------------HHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCC
Q 021374 159 ------------------QHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSL 220 (313)
Q Consensus 159 ------------------~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 220 (313)
.. ...+++|++|+++++. +++... ...+++|+.|+++++ .+.. +. .+..+++|
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n-~l~~--~~-~~~~l~~L 267 (347)
T 4fmz_A 197 SLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNK-ITDLSP---LANLSQLTWLEIGTN-QISD--IN-AVKDLTKL 267 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSS-CCCC--CG-GGTTCTTC
T ss_pred CCCccceeecccCCCCCCch-hhcCCcCCEEEccCCc-cCCCcc---hhcCCCCCEEECCCC-ccCC--Ch-hHhcCCCc
Confidence 00 2234445555554432 222111 223455555555543 2222 11 12344555
Q ss_pred CEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEee
Q 021374 221 RSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLS 300 (313)
Q Consensus 221 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~ 300 (313)
+.|+++++ .+.+. ..+..+++|++|++++| .+++.....+.++++|++|++++| .+++... ...+++|+.|+
T Consensus 268 ~~L~l~~n-~l~~~--~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~ 339 (347)
T 4fmz_A 268 KMLNVGSN-QISDI--SVLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQN-HITDIRP---LASLSKMDSAD 339 (347)
T ss_dssp CEEECCSS-CCCCC--GGGGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSS-SCCCCGG---GGGCTTCSEES
T ss_pred CEEEccCC-ccCCC--hhhcCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCC-ccccccC---hhhhhccceee
Confidence 55555553 22221 23445555555555555 444444444555555555555555 3333222 23455555555
Q ss_pred cCCc
Q 021374 301 SGAE 304 (313)
Q Consensus 301 l~~~ 304 (313)
+++|
T Consensus 340 l~~N 343 (347)
T 4fmz_A 340 FANQ 343 (347)
T ss_dssp SSCC
T ss_pred hhhh
Confidence 5554
No 17
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.56 E-value=1.1e-13 Score=117.65 Aligned_cols=180 Identities=18% Similarity=0.245 Sum_probs=141.6
Q ss_pred CCCcEEecCCCCCCChHHHHHHHhc----CCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHH
Q 021374 114 QDLESLNLNGCQKISDKGIEIISST----CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD 189 (313)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~ 189 (313)
+.|+.|+++++ .++......+... +++|++|+|++| .+++.++..+...+++|++|+++++ .+++.+...+..
T Consensus 72 ~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~ 148 (372)
T 3un9_A 72 SSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRD 148 (372)
T ss_dssp TTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHH
T ss_pred hhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHH
Confidence 78999999997 6777665555443 369999999999 8999988888877889999999997 788877776654
Q ss_pred ----hCCCCcEEecCCCCCCCHHHHHHH---HhhCCCCCEEEeCCCCCCCHHHHHH----hhcCCCCCEEecCCCCCCCh
Q 021374 190 ----NYQELESLNLTRCVKLTDGGLQKI---LIKCSSLRSLNLYALSGFTDEAYKK----ISLLAHLKFLDLCGAQNLSD 258 (313)
Q Consensus 190 ----~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~~~ 258 (313)
..++|++|++++| .+++.+...+ +..+++|++|+++++ .+.+.+... +...++|++|+|++| .+++
T Consensus 149 ~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~ 225 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN-GAGD 225 (372)
T ss_dssp HHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCH
T ss_pred HHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCH
Confidence 3588999999995 7777665443 467899999999995 687766544 456789999999999 7888
Q ss_pred HHHHHhh----CCCCCceeeccCCCCCChHHHHHHHHhCC-C---ccEee
Q 021374 259 EGLACIA----KCKNLVSLNLTWCVRITDVGVMAIAEGCS-S---LEFLS 300 (313)
Q Consensus 259 ~~~~~l~----~~~~L~~L~l~~~~~~~~~~~~~l~~~~~-~---L~~L~ 300 (313)
.+...+. .+++|++|+|++| .+++.++..+..... . |+.+.
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~~~~~~~~~L~~l~ 274 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFN-ELSSEGRQVLRDLGGAAEGGARVVV 274 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTS-SCCHHHHHHHHHCC------CEEEC
T ss_pred HHHHHHHHHHHhCCCCCEEeccCC-CCCHHHHHHHHHHhcCCCccchhhH
Confidence 7765554 5799999999999 899999988875321 2 66665
No 18
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.55 E-value=7.4e-17 Score=140.79 Aligned_cols=212 Identities=19% Similarity=0.181 Sum_probs=139.2
Q ss_pred cccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHH
Q 021374 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (313)
Q Consensus 81 ~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 160 (313)
..+++|+.|+++++. +.... ...+..+++|+.|+|+++ .++.... .....+++|++|+++++ .+..... .
T Consensus 85 ~~l~~L~~L~Ls~n~-i~~i~-----~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N-~i~~~~~-~ 154 (440)
T 3zyj_A 85 KHLRHLEILQLSRNH-IRTIE-----IGAFNGLANLNTLELFDN-RLTTIPN-GAFVYLSKLKELWLRNN-PIESIPS-Y 154 (440)
T ss_dssp SSCSSCCEEECCSSC-CCEEC-----GGGGTTCSSCCEEECCSS-CCSSCCT-TTSCSCSSCCEEECCSC-CCCEECT-T
T ss_pred hCCCCCCEEECCCCc-CCccC-----hhhccCCccCCEEECCCC-cCCeeCH-hHhhccccCceeeCCCC-cccccCH-H
Confidence 456778888887753 32211 112456678888888875 3332211 12245678888888877 4442211 1
Q ss_pred HHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhh
Q 021374 161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKIS 240 (313)
Q Consensus 161 ~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 240 (313)
.+..+++|++|+++++..++..... ....+++|+.|+++++ .+.. +.. +..+++|+.|+++++ .+.......+.
T Consensus 155 ~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n-~l~~--~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~ 228 (440)
T 3zyj_A 155 AFNRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMC-NLRE--IPN-LTPLIKLDELDLSGN-HLSAIRPGSFQ 228 (440)
T ss_dssp TTTTCTTCCEEECCCCTTCCEECTT-TTTTCSSCCEEECTTS-CCSS--CCC-CTTCSSCCEEECTTS-CCCEECTTTTT
T ss_pred HhhhCcccCEeCCCCCCCcceeCcc-hhhcccccCeecCCCC-cCcc--ccc-cCCCcccCEEECCCC-ccCccChhhhc
Confidence 2245788888888876544332111 1234788999999885 4442 222 456788999999884 56555455677
Q ss_pred cCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcccccccc
Q 021374 241 LLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCSCS 311 (313)
Q Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 311 (313)
.+++|++|++++| .++......+.++++|++|+|++| .++..... .+..+++|+.|++++|.--|.|.
T Consensus 229 ~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 229 GLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHN-NLTLLPHD-LFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp TCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTS-CCCCCCTT-TTSSCTTCCEEECCSSCEECSST
T ss_pred cCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCC-CCCccChh-HhccccCCCEEEcCCCCccCCCC
Confidence 8899999999998 666655555778899999999998 66644332 33468999999999999888886
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.54 E-value=1.4e-15 Score=133.38 Aligned_cols=116 Identities=22% Similarity=0.213 Sum_probs=74.9
Q ss_pred CCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCC
Q 021374 191 YQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNL 270 (313)
Q Consensus 191 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 270 (313)
+++|+.|+++++ .+.... ...+..+++|+.|+++++ .+.......+..+++|++|++++| .++......+.++++|
T Consensus 298 l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 373 (455)
T 3v47_A 298 FTDLEQLTLAQN-EINKID-DNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNL 373 (455)
T ss_dssp CTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTC
T ss_pred CCCCCEEECCCC-cccccC-hhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCC-cccccChhhccccccc
Confidence 455555555552 333211 112345667777777663 444444455667788888888888 5665544556778899
Q ss_pred ceeeccCCCCCChHHHHHHHHhCCCccEeecCCccccccccC
Q 021374 271 VSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCSCSH 312 (313)
Q Consensus 271 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 312 (313)
++|++++| .++..... .+..+++|+.|++++|.-.|.|+.
T Consensus 374 ~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 374 KELALDTN-QLKSVPDG-IFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cEEECCCC-ccccCCHh-HhccCCcccEEEccCCCcccCCCc
Confidence 99999887 66543322 335788999999999988888864
No 20
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.54 E-value=1.1e-16 Score=140.19 Aligned_cols=211 Identities=18% Similarity=0.170 Sum_probs=131.6
Q ss_pred ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHH
Q 021374 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 161 (313)
Q Consensus 82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 161 (313)
.+++|+.|+++++. +.... ...+..+++|+.|+|+++ .++.... .....+++|++|+++++ .+.... ...
T Consensus 97 ~l~~L~~L~Ls~n~-i~~~~-----~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~-~~~ 166 (452)
T 3zyi_A 97 HLHHLEVLQLGRNS-IRQIE-----VGAFNGLASLNTLELFDN-WLTVIPS-GAFEYLSKLRELWLRNN-PIESIP-SYA 166 (452)
T ss_dssp TCTTCCEEECCSSC-CCEEC-----TTTTTTCTTCCEEECCSS-CCSBCCT-TTSSSCTTCCEEECCSC-CCCEEC-TTT
T ss_pred CCCCCCEEECCCCc-cCCcC-----hhhccCcccCCEEECCCC-cCCccCh-hhhcccCCCCEEECCCC-CcceeC-HhH
Confidence 45666777766642 22211 111345577777777764 3332211 11245677777777766 443211 112
Q ss_pred HhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhc
Q 021374 162 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISL 241 (313)
Q Consensus 162 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 241 (313)
+..+++|++|+++++..++...... ...+++|+.|+++++ .+.. +.. +..+++|+.|+++++ .+.......+..
T Consensus 167 ~~~l~~L~~L~l~~~~~l~~i~~~~-~~~l~~L~~L~L~~n-~l~~--~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~ 240 (452)
T 3zyi_A 167 FNRVPSLMRLDLGELKKLEYISEGA-FEGLFNLKYLNLGMC-NIKD--MPN-LTPLVGLEELEMSGN-HFPEIRPGSFHG 240 (452)
T ss_dssp TTTCTTCCEEECCCCTTCCEECTTT-TTTCTTCCEEECTTS-CCSS--CCC-CTTCTTCCEEECTTS-CCSEECGGGGTT
T ss_pred HhcCCcccEEeCCCCCCccccChhh-ccCCCCCCEEECCCC-cccc--ccc-ccccccccEEECcCC-cCcccCcccccC
Confidence 2456778888877754443321111 234678888888874 4443 111 356788889998884 565555566778
Q ss_pred CCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcccccccc
Q 021374 242 LAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCSCS 311 (313)
Q Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 311 (313)
+++|++|++++| .++......+.++++|++|++++| .++.... ..+..+++|+.|++++|.--|.|+
T Consensus 241 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 241 LSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHN-NLSSLPH-DLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCT-TSSTTCTTCCEEECCSSCEECSTT
T ss_pred ccCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCCC-cCCccCh-HHhccccCCCEEEccCCCcCCCCC
Confidence 899999999998 666554455778899999999998 6654332 233468899999999999888886
No 21
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.54 E-value=1.2e-13 Score=116.74 Aligned_cols=198 Identities=24% Similarity=0.278 Sum_probs=127.0
Q ss_pred ccccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHH
Q 021374 80 IPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQ 159 (313)
Q Consensus 80 ~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 159 (313)
+..+++|+.|+++++. +.+... +..+++|+.|+++++........ ...+++|++|+++++ .+.....
T Consensus 106 ~~~l~~L~~L~l~~n~-i~~~~~-------~~~l~~L~~L~l~~n~~~~~~~~---~~~l~~L~~L~l~~~-~~~~~~~- 172 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDN-ISDISP-------LANLTKMYSLNLGANHNLSDLSP---LSNMTGLNYLTVTES-KVKDVTP- 172 (347)
T ss_dssp GTTCTTCSEEECTTSC-CCCCGG-------GTTCTTCCEEECTTCTTCCCCGG---GTTCTTCCEEECCSS-CCCCCGG-
T ss_pred HcCCCcCCEEECcCCc-ccCchh-------hccCCceeEEECCCCCCcccccc---hhhCCCCcEEEecCC-CcCCchh-
Confidence 4467899999999864 332211 35679999999999754443221 367899999999988 4443221
Q ss_pred HHHhcCCCCcEEeccCCcccchHHH-HH------------------HHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCC
Q 021374 160 HLVKNCKHIIDLNLSGCKNLLDKSL-QL------------------IADNYQELESLNLTRCVKLTDGGLQKILIKCSSL 220 (313)
Q Consensus 160 ~~~~~~~~L~~L~l~~~~~~~~~~l-~~------------------l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 220 (313)
...+++|++|+++++. +.+... .. ....+++|+.|++++| .+... .. +..+++|
T Consensus 173 --~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n-~l~~~--~~-~~~l~~L 245 (347)
T 4fmz_A 173 --IANLTDLYSLSLNYNQ-IEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNN-KITDL--SP-LANLSQL 245 (347)
T ss_dssp --GGGCTTCSEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCCC--GG-GTTCTTC
T ss_pred --hccCCCCCEEEccCCc-ccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCC-ccCCC--cc-hhcCCCC
Confidence 4568899999998863 332111 00 0123455556666553 33321 11 4556677
Q ss_pred CEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEee
Q 021374 221 RSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLS 300 (313)
Q Consensus 221 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~ 300 (313)
+.|+++++ .+.. +..+..+++|++|++++| .+++. ..+..+++|++|++++| .+++.....+. .+++|+.|+
T Consensus 246 ~~L~l~~n-~l~~--~~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~L~~n-~l~~~~~~~l~-~l~~L~~L~ 317 (347)
T 4fmz_A 246 TWLEIGTN-QISD--INAVKDLTKLKMLNVGSN-QISDI--SVLNNLSQLNSLFLNNN-QLGNEDMEVIG-GLTNLTTLF 317 (347)
T ss_dssp CEEECCSS-CCCC--CGGGTTCTTCCEEECCSS-CCCCC--GGGGGCTTCSEEECCSS-CCCGGGHHHHH-TCTTCSEEE
T ss_pred CEEECCCC-ccCC--ChhHhcCCCcCEEEccCC-ccCCC--hhhcCCCCCCEEECcCC-cCCCcChhHhh-ccccCCEEE
Confidence 77777664 3332 234567778888888887 45443 34667888899999888 77766655554 688999999
Q ss_pred cCCcc
Q 021374 301 SGAEM 305 (313)
Q Consensus 301 l~~~~ 305 (313)
+++|.
T Consensus 318 L~~n~ 322 (347)
T 4fmz_A 318 LSQNH 322 (347)
T ss_dssp CCSSS
T ss_pred ccCCc
Confidence 98875
No 22
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.52 E-value=4e-17 Score=135.61 Aligned_cols=214 Identities=14% Similarity=0.134 Sum_probs=137.0
Q ss_pred cccCCcCeeeccCCccCchHH--HHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHH
Q 021374 81 PRYRHVREINLEFAQDIEDRH--LELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGI 158 (313)
Q Consensus 81 ~~~~~l~~L~l~~~~~~~~~~--~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 158 (313)
..+++|+.|+++++. ++... ...+ ..+++|+.|+++++ .+.... .....+++|++|+++++ .+.....
T Consensus 49 ~~l~~L~~L~L~~n~-l~~~~~~~~~~-----~~~~~L~~L~Ls~n-~i~~l~--~~~~~l~~L~~L~l~~n-~l~~~~~ 118 (306)
T 2z66_A 49 DKLTQLTKLSLSSNG-LSFKGCCSQSD-----FGTTSLKYLDLSFN-GVITMS--SNFLGLEQLEHLDFQHS-NLKQMSE 118 (306)
T ss_dssp TTCTTCSEEECCSSC-CCEEEEEEHHH-----HSCSCCCEEECCSC-SEEEEE--EEEETCTTCCEEECTTS-EEESSTT
T ss_pred hccccCCEEECCCCc-cCcccCccccc-----ccccccCEEECCCC-ccccCh--hhcCCCCCCCEEECCCC-ccccccc
Confidence 356788888888753 32110 0111 14578888888875 322211 11245788888888877 4433221
Q ss_pred HHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHH
Q 021374 159 QHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKK 238 (313)
Q Consensus 159 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 238 (313)
......+++|++|+++++. ++... ......+++|+.|+++++ .+....+...+..+++|+.|+++++ .+.......
T Consensus 119 ~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~ 194 (306)
T 2z66_A 119 FSVFLSLRNLIYLDISHTH-TRVAF-NGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTA 194 (306)
T ss_dssp TTTTTTCTTCCEEECTTSC-CEECS-TTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTT
T ss_pred chhhhhccCCCEEECCCCc-CCccc-hhhcccCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCC-CcCCcCHHH
Confidence 1223467889999998863 33221 112234789999999884 4432112233567789999999984 555544556
Q ss_pred hhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhC-CCccEeecCCcccccccc
Q 021374 239 ISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGC-SSLEFLSSGAEMNCCSCS 311 (313)
Q Consensus 239 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~~~~~~~ 311 (313)
+..+++|++|++++| .++......+..+++|++|++++| .++......+. .+ ++|+.|++++|.-.|.|+
T Consensus 195 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~-~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 195 FNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQ-HFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp TTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTS-CCCBCSSSSCC-CCCTTCCEEECTTCCEECSGG
T ss_pred hcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCC-CCcccCHHHHH-hhhccCCEEEccCCCeecccC
Confidence 778899999999998 555443334677899999999998 66655443333 35 489999999998777775
No 23
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.52 E-value=4.8e-16 Score=131.75 Aligned_cols=216 Identities=17% Similarity=0.176 Sum_probs=114.1
Q ss_pred cccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHH
Q 021374 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (313)
Q Consensus 81 ~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 160 (313)
..+++|+.|+++++. ++... ...+..+++|++|+++++ .++.... .....+++|++|+++++ .+.......
T Consensus 73 ~~l~~L~~L~L~~n~-l~~~~-----~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~l~~~~ 143 (353)
T 2z80_A 73 QRCVNLQALVLTSNG-INTIE-----EDSFSSLGSLEHLDLSYN-YLSNLSS-SWFKPLSSLTFLNLLGN-PYKTLGETS 143 (353)
T ss_dssp TTCTTCCEEECTTSC-CCEEC-----TTTTTTCTTCCEEECCSS-CCSSCCH-HHHTTCTTCSEEECTTC-CCSSSCSSC
T ss_pred ccCCCCCEEECCCCc-cCccC-----HhhcCCCCCCCEEECCCC-cCCcCCH-hHhCCCccCCEEECCCC-CCcccCchh
Confidence 345677777777652 32211 111345567777777765 3332222 22255677777777766 333211001
Q ss_pred HHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhh
Q 021374 161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKIS 240 (313)
Q Consensus 161 ~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 240 (313)
....+++|++|+++++..++......+ ..+++|+.|+++++ .+... ....+..+++|+.|+++++ .+.......+.
T Consensus 144 ~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~ 219 (353)
T 2z80_A 144 LFSHLTKLQILRVGNMDTFTKIQRKDF-AGLTFLEELEIDAS-DLQSY-EPKSLKSIQNVSHLILHMK-QHILLLEIFVD 219 (353)
T ss_dssp SCTTCTTCCEEEEEESSSCCEECTTTT-TTCCEEEEEEEEET-TCCEE-CTTTTTTCSEEEEEEEECS-CSTTHHHHHHH
T ss_pred hhccCCCCcEEECCCCccccccCHHHc-cCCCCCCEEECCCC-CcCcc-CHHHHhccccCCeecCCCC-ccccchhhhhh
Confidence 223466777777766432222111111 23566666666653 33221 0112344556666666553 23333222333
Q ss_pred cCCCCCEEecCCCC--------------------------CCChHH----HHHhhCCCCCceeeccCCCCCChHHHHHHH
Q 021374 241 LLAHLKFLDLCGAQ--------------------------NLSDEG----LACIAKCKNLVSLNLTWCVRITDVGVMAIA 290 (313)
Q Consensus 241 ~~~~L~~L~l~~~~--------------------------~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~ 290 (313)
.+++|++|++++|. .+++.. ...+.++++|++|++++| .++... ..++
T Consensus 220 ~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~-~~~~ 297 (353)
T 2z80_A 220 VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVP-DGIF 297 (353)
T ss_dssp HTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCC-TTTT
T ss_pred hcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccC-HHHH
Confidence 45566666665552 233322 234567899999999998 666322 2234
Q ss_pred HhCCCccEeecCCcccccccc
Q 021374 291 EGCSSLEFLSSGAEMNCCSCS 311 (313)
Q Consensus 291 ~~~~~L~~L~l~~~~~~~~~~ 311 (313)
..+++|+.|++++|.--|.|+
T Consensus 298 ~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 298 DRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TTCTTCCEEECCSSCBCCCHH
T ss_pred hcCCCCCEEEeeCCCccCcCC
Confidence 578999999999998877775
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.50 E-value=2e-15 Score=132.30 Aligned_cols=87 Identities=20% Similarity=0.180 Sum_probs=50.0
Q ss_pred hhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCC
Q 021374 215 IKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCS 294 (313)
Q Consensus 215 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 294 (313)
..+++|+.|+++++ .+.......+..+++|++|++++| .++......+.++++|++|++++| .++......+ ..++
T Consensus 296 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~ 371 (455)
T 3v47_A 296 SHFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSF-LGLP 371 (455)
T ss_dssp TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSS-CCCEECTTTT-TTCT
T ss_pred ccCCCCCEEECCCC-cccccChhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCC-cccccChhhc-cccc
Confidence 44556666666553 344333334556667777777766 454443344566777777777776 5554433222 2467
Q ss_pred CccEeecCCcc
Q 021374 295 SLEFLSSGAEM 305 (313)
Q Consensus 295 ~L~~L~l~~~~ 305 (313)
+|+.|++++|.
T Consensus 372 ~L~~L~L~~N~ 382 (455)
T 3v47_A 372 NLKELALDTNQ 382 (455)
T ss_dssp TCCEEECCSSC
T ss_pred cccEEECCCCc
Confidence 77777777663
No 25
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.48 E-value=5.3e-15 Score=120.65 Aligned_cols=176 Identities=17% Similarity=0.146 Sum_probs=85.2
Q ss_pred cCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHH
Q 021374 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV 162 (313)
Q Consensus 83 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 162 (313)
+++++.|++.++. +.... . +..+++|+.|+++++. +... . ....+++|++|+++++ .++... ....
T Consensus 40 l~~L~~L~l~~~~-i~~~~--~-----l~~l~~L~~L~l~~n~-l~~~--~-~l~~l~~L~~L~L~~n-~l~~~~-~~~~ 105 (272)
T 3rfs_A 40 LNSIDQIIANNSD-IKSVQ--G-----IQYLPNVRYLALGGNK-LHDI--S-ALKELTNLTYLILTGN-QLQSLP-NGVF 105 (272)
T ss_dssp HTTCCEEECTTSC-CCCCT--T-----GGGCTTCCEEECTTSC-CCCC--G-GGTTCTTCCEEECTTS-CCCCCC-TTTT
T ss_pred ccceeeeeeCCCC-ccccc--c-----cccCCCCcEEECCCCC-CCCc--h-hhcCCCCCCEEECCCC-ccCccC-hhHh
Confidence 4666777766543 22110 0 2345667777776652 2221 1 1245666777777665 333211 1112
Q ss_pred hcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcC
Q 021374 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL 242 (313)
Q Consensus 163 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 242 (313)
..+++|++|+++++ .++.... .....+++|+.|+++++ .+.... ...+..+++|+.|+++++ .++......+..+
T Consensus 106 ~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l 180 (272)
T 3rfs_A 106 DKLTNLKELVLVEN-QLQSLPD-GVFDKLTNLTYLNLAHN-QLQSLP-KGVFDKLTNLTELDLSYN-QLQSLPEGVFDKL 180 (272)
T ss_dssp TTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTC
T ss_pred cCCcCCCEEECCCC-cCCccCH-HHhccCCCCCEEECCCC-ccCccC-HHHhccCccCCEEECCCC-CcCccCHHHhcCC
Confidence 34566666666664 2322111 11123566666666663 333210 112345566666666663 3333222334455
Q ss_pred CCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCC
Q 021374 243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWC 278 (313)
Q Consensus 243 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 278 (313)
++|++|++++| .++......+.++++|++|++++|
T Consensus 181 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 181 TQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp TTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCC
Confidence 66666666666 344332233455666666666665
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.48 E-value=1.1e-15 Score=138.72 Aligned_cols=165 Identities=22% Similarity=0.255 Sum_probs=100.5
Q ss_pred cCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHH--HHHh
Q 021374 138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQ--KILI 215 (313)
Q Consensus 138 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~--~~~~ 215 (313)
.+++|++|+++++ .+...........+++|+.|+++++ .++.... .....+++|+.|+++++ .+.+..+. ..+.
T Consensus 398 ~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~ 473 (606)
T 3t6q_A 398 ECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSE-QLFDGLPALQHLNLQGN-HFPKGNIQKTNSLQ 473 (606)
T ss_dssp TCTTCSEEECTTC-CEECCTTCCTTTTCTTCCEEECTTC-CCBTTCT-TTTTTCTTCCEEECTTC-BCGGGEECSSCGGG
T ss_pred CCccCCeEECCCC-cCCCcccchhhhCcccCCEEECCCC-ccCCcCH-HHHhCCCCCCEEECCCC-CCCccccccchhhc
Confidence 3455555555554 2221111111234566777777665 2322111 11233677777777774 33321110 1245
Q ss_pred hCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCC
Q 021374 216 KCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSS 295 (313)
Q Consensus 216 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 295 (313)
.+++|+.|+++++ .+.......+..+++|++|++++| .++......+.++++| +|++++| .++...... +..+++
T Consensus 474 ~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~-~~~l~~ 548 (606)
T 3t6q_A 474 TLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLASN-HISIILPSL-LPILSQ 548 (606)
T ss_dssp GCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGG-HHHHHT
T ss_pred cCCCccEEECCCC-ccCccChhhhccccCCCEEECCCC-ccCcCChhHhCccccc-EEECcCC-cccccCHhh-cccCCC
Confidence 6788888888874 455444455677888888888888 6776666667788888 8888888 665433222 235689
Q ss_pred ccEeecCCcccccccc
Q 021374 296 LEFLSSGAEMNCCSCS 311 (313)
Q Consensus 296 L~~L~l~~~~~~~~~~ 311 (313)
|+.|++++|.--|.|+
T Consensus 549 L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 549 QRTINLRQNPLDCTCS 564 (606)
T ss_dssp SSEEECTTCCEECSGG
T ss_pred CCEEeCCCCCccccCC
Confidence 9999999998888886
No 27
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.47 E-value=5.4e-15 Score=122.95 Aligned_cols=228 Identities=19% Similarity=0.175 Sum_probs=139.1
Q ss_pred ceeecccccccchhhHHHHhhccccCCcCeeeccCCccCchHHHHHHHHHhc-CCCCCCcEEecCCCCCCChH----HHH
Q 021374 59 WLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCL-GSLQDLESLNLNGCQKISDK----GIE 133 (313)
Q Consensus 59 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~-~~~~~L~~L~l~~~~~~~~~----~~~ 133 (313)
++.+.+...................++|++|+++++. +.......+ + ..+++|+.|+++++ .++.. ...
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~----~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~ 139 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLK-ITGTMPPLP----LEATGLALSSLRLRNV-SWATGRSWLAEL 139 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCC-CBSCCCCCS----SSCCCBCCSSCEEESC-CCSSTTSSHHHH
T ss_pred eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCE-eccchhhhh----hhccCCCCCEEEeecc-cccchhhhhHHH
Confidence 3444444443333333333333345678999998763 222111111 1 45688999999886 33321 111
Q ss_pred HHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHH--HHhCCCCcEEecCCCCCCCH--HH
Q 021374 134 IISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLI--ADNYQELESLNLTRCVKLTD--GG 209 (313)
Q Consensus 134 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l--~~~~~~L~~L~l~~~~~~~~--~~ 209 (313)
.+ ..+++|++|+++++ .+..... .....+++|++|+++++...+...+... ...+++|++|+++++ .++. ..
T Consensus 140 ~~-~~~~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~ 215 (310)
T 4glp_A 140 QQ-WLKPGLKVLSIAQA-HSPAFSC-EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGV 215 (310)
T ss_dssp HT-TBCSCCCEEEEECC-SSCCCCT-TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHH
T ss_pred Hh-hhccCCCEEEeeCC-CcchhhH-HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHH
Confidence 22 36889999999988 5433211 1224678999999999643333333211 135789999999995 5653 22
Q ss_pred HHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcC---CCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHH
Q 021374 210 LQKILIKCSSLRSLNLYALSGFTDEAYKKISLL---AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGV 286 (313)
Q Consensus 210 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 286 (313)
...++..+++|++|+++++ .+....+..+..+ ++|++|++++| .++.- ...+ +++|++|++++| .++....
T Consensus 216 ~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~l-p~~~--~~~L~~L~Ls~N-~l~~~~~ 289 (310)
T 4glp_A 216 CAALAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFA-GLEQV-PKGL--PAKLRVLDLSSN-RLNRAPQ 289 (310)
T ss_dssp HHHHHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSC-CSCC--CSCCSCEECCSC-CCCSCCC
T ss_pred HHHHHhcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCC-CCCch-hhhh--cCCCCEEECCCC-cCCCCch
Confidence 2234578899999999984 4544322333433 79999999998 56521 1112 479999999998 6665322
Q ss_pred HHHHHhCCCccEeecCCcc
Q 021374 287 MAIAEGCSSLEFLSSGAEM 305 (313)
Q Consensus 287 ~~l~~~~~~L~~L~l~~~~ 305 (313)
...+++|+.|++++|.
T Consensus 290 ---~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 290 ---PDELPEVDNLTLDGNP 305 (310)
T ss_dssp ---TTSCCCCSCEECSSTT
T ss_pred ---hhhCCCccEEECcCCC
Confidence 3568999999999885
No 28
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.46 E-value=1e-13 Score=115.04 Aligned_cols=189 Identities=17% Similarity=0.197 Sum_probs=116.6
Q ss_pred cCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHH
Q 021374 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV 162 (313)
Q Consensus 83 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 162 (313)
+++|+.|++.++. +.... . +..+++|+.|+++++ .+..... ...+++|++|+++++ .++.. .. .
T Consensus 40 l~~L~~L~l~~~~-i~~l~--~-----~~~l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~n-~l~~~--~~-~ 103 (308)
T 1h6u_A 40 LDGITTLSAFGTG-VTTIE--G-----VQYLNNLIGLELKDN-QITDLAP---LKNLTKITELELSGN-PLKNV--SA-I 103 (308)
T ss_dssp HHTCCEEECTTSC-CCCCT--T-----GGGCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSC-CCSCC--GG-G
T ss_pred cCCcCEEEeeCCC-ccCch--h-----hhccCCCCEEEccCC-cCCCChh---HccCCCCCEEEccCC-cCCCc--hh-h
Confidence 4677777777653 32211 1 245677888888776 3333221 366778888888877 44432 12 3
Q ss_pred hcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcC
Q 021374 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL 242 (313)
Q Consensus 163 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 242 (313)
..+++|++|+++++ .+++. .. ...+++|+.|+++++ .+... .. +..+++|+.|+++++ .+.+.. .+..+
T Consensus 104 ~~l~~L~~L~l~~n-~l~~~--~~-l~~l~~L~~L~l~~n-~l~~~--~~-l~~l~~L~~L~l~~n-~l~~~~--~l~~l 172 (308)
T 1h6u_A 104 AGLQSIKTLDLTST-QITDV--TP-LAGLSNLQVLYLDLN-QITNI--SP-LAGLTNLQYLSIGNA-QVSDLT--PLANL 172 (308)
T ss_dssp TTCTTCCEEECTTS-CCCCC--GG-GTTCTTCCEEECCSS-CCCCC--GG-GGGCTTCCEEECCSS-CCCCCG--GGTTC
T ss_pred cCCCCCCEEECCCC-CCCCc--hh-hcCCCCCCEEECCCC-ccCcC--cc-ccCCCCccEEEccCC-cCCCCh--hhcCC
Confidence 45778888888875 34431 22 234778888888774 44431 11 467788888888774 444322 26677
Q ss_pred CCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374 243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM 305 (313)
Q Consensus 243 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 305 (313)
++|++|++++| .+++.. .+..+++|++|++++| .+++... +..+++|+.|++++|.
T Consensus 173 ~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 173 SKLTTLKADDN-KISDIS--PLASLPNLIEVHLKNN-QISDVSP---LANTSNLFIVTLTNQT 228 (308)
T ss_dssp TTCCEEECCSS-CCCCCG--GGGGCTTCCEEECTTS-CCCBCGG---GTTCTTCCEEEEEEEE
T ss_pred CCCCEEECCCC-ccCcCh--hhcCCCCCCEEEccCC-ccCcccc---ccCCCCCCEEEccCCe
Confidence 88888888887 454432 2667788888888877 5554431 3467888888887764
No 29
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.44 E-value=2e-15 Score=126.44 Aligned_cols=61 Identities=23% Similarity=0.187 Sum_probs=24.6
Q ss_pred hhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCC
Q 021374 215 IKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWC 278 (313)
Q Consensus 215 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 278 (313)
..+++|+.|+++++ .+.. ....+..+++|++|++++|. +.......+.++++|++|++++|
T Consensus 203 ~~l~~L~~L~L~~N-~l~~-l~~~l~~l~~L~~L~Ls~n~-~~~~~p~~~~~l~~L~~L~L~~n 263 (328)
T 4fcg_A 203 ANLQNLKSLKIRNS-PLSA-LGPAIHHLPKLEELDLRGCT-ALRNYPPIFGGRAPLKRLILKDC 263 (328)
T ss_dssp GGCTTCCEEEEESS-CCCC-CCGGGGGCTTCCEEECTTCT-TCCBCCCCTTCCCCCCEEECTTC
T ss_pred cCCCCCCEEEccCC-CCCc-CchhhccCCCCCEEECcCCc-chhhhHHHhcCCCCCCEEECCCC
Confidence 44445555555442 2221 11123444455555555442 22111222334445555555544
No 30
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.44 E-value=1e-15 Score=138.96 Aligned_cols=165 Identities=16% Similarity=0.190 Sum_probs=104.8
Q ss_pred cCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhC
Q 021374 138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKC 217 (313)
Q Consensus 138 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 217 (313)
.+++|+.|+++++ .+...........+++|++|+++++. ++.... .....+++|+.|+++++ .+.+..+...+..+
T Consensus 397 ~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l 472 (606)
T 3vq2_A 397 GLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYTN-TKIDFD-GIFLGLTSLNTLKMAGN-SFKDNTLSNVFANT 472 (606)
T ss_dssp TCTTCCEEECTTS-EEESTTTTTTTTTCTTCCEEECTTSC-CEECCT-TTTTTCTTCCEEECTTC-EEGGGEECSCCTTC
T ss_pred CCCCCCeeECCCC-ccCCccChhhhhccccCCEEECcCCC-CCccch-hhhcCCCCCCEEECCCC-cCCCcchHHhhccC
Confidence 4456666666655 22221111122456777777777753 322111 11234678888888774 33321122334667
Q ss_pred CCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCC-Cc
Q 021374 218 SSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCS-SL 296 (313)
Q Consensus 218 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~-~L 296 (313)
++|+.|+++++ .+.......+..+++|++|++++| .++......+.++++|++|++++| .++..... +..+| +|
T Consensus 473 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~--~~~l~~~L 547 (606)
T 3vq2_A 473 TNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGI--LQHFPKSL 547 (606)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTS-CCCCEESC--GGGSCTTC
T ss_pred CCCCEEECCCC-cCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCC-cCcccCHh--HhhhcccC
Confidence 88999999885 555544556778899999999998 666655556778899999999998 56633222 44566 69
Q ss_pred cEeecCCcccccccc
Q 021374 297 EFLSSGAEMNCCSCS 311 (313)
Q Consensus 297 ~~L~l~~~~~~~~~~ 311 (313)
+.|++++|.--|.|+
T Consensus 548 ~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 548 AFFNLTNNSVACICE 562 (606)
T ss_dssp CEEECCSCCCCCSST
T ss_pred cEEEccCCCcccCCc
Confidence 999999998878775
No 31
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.44 E-value=4.1e-15 Score=121.16 Aligned_cols=179 Identities=20% Similarity=0.208 Sum_probs=75.3
Q ss_pred CCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHh
Q 021374 84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK 163 (313)
Q Consensus 84 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 163 (313)
++++.|+++++. ++.. ....+..+++|++|+++++ .++... ..+...+++|++|+++++ .+..... ....
T Consensus 37 ~~l~~L~l~~n~-l~~~-----~~~~~~~l~~L~~L~l~~n-~l~~i~-~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~ 106 (270)
T 2o6q_A 37 ADTKKLDLQSNK-LSSL-----PSKAFHRLTKLRLLYLNDN-KLQTLP-AGIFKELKNLETLWVTDN-KLQALPI-GVFD 106 (270)
T ss_dssp TTCSEEECCSSC-CSCC-----CTTSSSSCTTCCEEECCSS-CCSCCC-TTTTSSCTTCCEEECCSS-CCCCCCT-TTTT
T ss_pred CCCCEEECcCCC-CCee-----CHHHhcCCCCCCEEECCCC-ccCeeC-hhhhcCCCCCCEEECCCC-cCCcCCH-hHcc
Confidence 456666666542 2211 1111345566666666654 222111 111234566666666655 3322111 1123
Q ss_pred cCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCC
Q 021374 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLA 243 (313)
Q Consensus 164 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 243 (313)
.+++|++|+++++ .++..... ....+++|++|+++++ .+.... ...+..+++|+.|+++++ .+.......+..++
T Consensus 107 ~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~ 181 (270)
T 2o6q_A 107 QLVNLAELRLDRN-QLKSLPPR-VFDSLTKLTYLSLGYN-ELQSLP-KGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLT 181 (270)
T ss_dssp TCSSCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCT
T ss_pred cccCCCEEECCCC-ccCeeCHH-HhCcCcCCCEEECCCC-cCCccC-HhHccCCcccceeEecCC-cCcEeChhHhccCC
Confidence 3556666666553 22221111 1123455555555553 232210 011234455555555542 22222222234445
Q ss_pred CCCEEecCCCCCCChHHHHHhhCCCCCceeeccCC
Q 021374 244 HLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWC 278 (313)
Q Consensus 244 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 278 (313)
+|++|++++| .++......+..+++|++|++++|
T Consensus 182 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 182 ELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp TCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CcCEEECCCC-cCCcCCHHHhccccCCCEEEecCC
Confidence 5555555555 333222222334555555555544
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.44 E-value=3.7e-15 Score=131.47 Aligned_cols=114 Identities=23% Similarity=0.227 Sum_probs=78.9
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCc
Q 021374 192 QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLV 271 (313)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 271 (313)
.+|+.|+++++ .+.... ...+..+++|+.|+++++ .+.......+..+++|++|++++| .++......+.++++|+
T Consensus 224 ~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 299 (477)
T 2id5_A 224 LNLTSLSITHC-NLTAVP-YLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLR 299 (477)
T ss_dssp CCCSEEEEESS-CCCSCC-HHHHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCC
T ss_pred ccccEEECcCC-cccccC-HHHhcCccccCeeECCCC-cCCccChhhccccccCCEEECCCC-ccceECHHHhcCcccCC
Confidence 36666666663 343211 123577888999999874 455444445667889999999988 66655445577889999
Q ss_pred eeeccCCCCCChHHHHHHHHhCCCccEeecCCcccccccc
Q 021374 272 SLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCSCS 311 (313)
Q Consensus 272 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 311 (313)
+|++++| .++..... .+..+++|+.|++++|.--|.|.
T Consensus 300 ~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 300 VLNVSGN-QLTTLEES-VFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp EEECCSS-CCSCCCGG-GBSCGGGCCEEECCSSCEECSGG
T ss_pred EEECCCC-cCceeCHh-HcCCCcccCEEEccCCCccCccc
Confidence 9999988 66543322 23467899999999998777775
No 33
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.43 E-value=1.8e-13 Score=102.00 Aligned_cols=95 Identities=15% Similarity=0.286 Sum_probs=47.6
Q ss_pred CCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCC
Q 021374 141 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSL 220 (313)
Q Consensus 141 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 220 (313)
.|+.|++++| .+++.++..+ ..|++|++|++++|..++|.++..+... + ..+++|
T Consensus 62 ~L~~LDLs~~-~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~-~----------------------~~~~~L 116 (176)
T 3e4g_A 62 KIQAIDATDS-CIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQL-E----------------------NLQKSM 116 (176)
T ss_dssp CEEEEEEESC-CCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTC-H----------------------HHHHHC
T ss_pred eEeEEeCcCC-CccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhc-c----------------------cccCCC
Confidence 4555555555 3555555444 2455555555555544555555444431 0 012345
Q ss_pred CEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHH
Q 021374 221 RSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEG 260 (313)
Q Consensus 221 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 260 (313)
++|++++|..+++.++..++.+++|++|++++|+.+++.+
T Consensus 117 ~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 117 LEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp CEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCCHH
T ss_pred CEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCchH
Confidence 5555555555555555555555555555555555555543
No 34
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.43 E-value=1.4e-15 Score=124.41 Aligned_cols=211 Identities=16% Similarity=0.165 Sum_probs=134.1
Q ss_pred CCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHh
Q 021374 84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK 163 (313)
Q Consensus 84 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 163 (313)
++++.|+++++. ++.... ..+..+++|+.|+++++ .+...... ....+++|++|+++++ .++..... ...
T Consensus 28 ~~l~~L~ls~n~-l~~~~~-----~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~-~~~ 97 (276)
T 2z62_A 28 FSTKNLDLSFNP-LRHLGS-----YSFFSFPELQVLDLSRC-EIQTIEDG-AYQSLSHLSTLILTGN-PIQSLALG-AFS 97 (276)
T ss_dssp TTCCEEECTTCC-CCEECT-----TTTTTCTTCSEEECTTC-CCCEECTT-TTTTCTTCCEEECTTC-CCCEECTT-TTT
T ss_pred CCccEEECCCCc-ccccCH-----hHhccccCCcEEECCCC-cCCccCHH-HccCCcCCCEEECCCC-ccCccChh-hhc
Confidence 568899998763 332211 11456789999999886 44332211 2256789999999987 54433211 224
Q ss_pred cCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCH---HHHHHhh
Q 021374 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTD---EAYKKIS 240 (313)
Q Consensus 164 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~ 240 (313)
.+++|++|+++++. ++...... ...+++|+.|+++++ .+....+...+..+++|+.|+++++ .+.. ..+..+.
T Consensus 98 ~l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~ 173 (276)
T 2z62_A 98 GLSSLQKLVAVETN-LASLENFP-IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLH 173 (276)
T ss_dssp TCTTCCEEECTTSC-CCCSTTCC-CTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHH
T ss_pred CCccccEEECCCCC-ccccCchh-cccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhh
Confidence 67899999998863 33211111 234789999999984 4543223334677899999999884 4443 2344444
Q ss_pred cCCCCC-EEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCccccccccC
Q 021374 241 LLAHLK-FLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCSCSH 312 (313)
Q Consensus 241 ~~~~L~-~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 312 (313)
.++.|. +|++++| .++..... .....+|++|++++| .++.... ..+..+++|+.|++++|.-.|.|+.
T Consensus 174 ~L~~l~l~L~ls~n-~l~~~~~~-~~~~~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 174 QMPLLNLSLDLSLN-PMNFIQPG-AFKEIRLKELALDTN-QLKSVPD-GIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp TCTTCCEEEECCSS-CCCEECTT-SSCSCCEEEEECCSS-CCSCCCT-TTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred hccccceeeecCCC-cccccCcc-ccCCCcccEEECCCC-ceeecCH-hHhcccccccEEEccCCcccccCCc
Confidence 555555 8999888 55543211 223458999999988 5664432 2345688999999999988888864
No 35
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.43 E-value=2e-15 Score=136.12 Aligned_cols=191 Identities=21% Similarity=0.214 Sum_probs=127.4
Q ss_pred CCCCCCcEEecCCCCCCChHH-HHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHH
Q 021374 111 GSLQDLESLNLNGCQKISDKG-IEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD 189 (313)
Q Consensus 111 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~ 189 (313)
..+++|+.|+++++ .+.... .......+++|++|+++++ .+...... ...+++|++|+++++. +..........
T Consensus 344 ~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~--~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 418 (570)
T 2z63_A 344 VDLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSN--FLGLEQLEHLDFQHSN-LKQMSEFSVFL 418 (570)
T ss_dssp CBCTTCCEEECCSS-CCBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEE--EETCTTCCEEECTTSE-EESCTTSCTTT
T ss_pred ccCCCCCEEeCcCC-ccCccccccccccccCccCEEECCCC-cccccccc--ccccCCCCEEEccCCc-cccccchhhhh
Confidence 35678888888875 333211 1122356788888888877 33221111 3457889999998853 33221111224
Q ss_pred hCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCC-HHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCC
Q 021374 190 NYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFT-DEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCK 268 (313)
Q Consensus 190 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 268 (313)
.+++|+.|++++| .+... ....+..+++|+.|+++++. +. ......+..+++|++|++++| .++......+.+++
T Consensus 419 ~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~ 494 (570)
T 2z63_A 419 SLRNLIYLDISHT-HTRVA-FNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLS 494 (570)
T ss_dssp TCTTCCEEECTTS-CCEEC-CTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCT
T ss_pred cCCCCCEEeCcCC-ccccc-chhhhhcCCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCC-ccccCChhhhhccc
Confidence 5789999999885 33321 12235678999999999853 33 222345668899999999999 67665555678899
Q ss_pred CCceeeccCCCCCChHHHHHHHHhCCCccEeecCCccccccccC
Q 021374 269 NLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCSCSH 312 (313)
Q Consensus 269 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 312 (313)
+|++|++++| .++..... .+..+++|+.|++++|.-.|.|+.
T Consensus 495 ~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 495 SLQVLNMASN-QLKSVPDG-IFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCEEeCCCC-cCCCCCHH-HhhcccCCcEEEecCCcccCCCcc
Confidence 9999999998 66654322 334789999999999998888875
No 36
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.42 E-value=1.8e-14 Score=119.86 Aligned_cols=207 Identities=19% Similarity=0.199 Sum_probs=134.7
Q ss_pred ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChH--HHHHHHh-cCCCCcEEEecCCcccCHHHH
Q 021374 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDK--GIEIISS-TCPELKVFSIYWNVRVTDIGI 158 (313)
Q Consensus 82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~-~~~~L~~L~l~~~~~~~~~~~ 158 (313)
.+++|++|+++++. +++.....+. ...+++|++|+++++ .++.. .+..+.. ..++|++|+++++ .+.....
T Consensus 93 ~l~~L~~L~L~~n~-l~~~~~~~~~---~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~ 166 (312)
T 1wwl_A 93 GISGLQELTLENLE-VTGTAPPPLL---EATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSC 166 (312)
T ss_dssp TTSCCCEEEEEEEB-CBSCCCCCSS---SCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCT
T ss_pred CcCCccEEEccCCc-ccchhHHHHH---HhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchH
Confidence 57899999998864 3321111110 256789999999986 33332 2222211 1389999999988 5543321
Q ss_pred HHHHhcCCCCcEEeccCCcccchHHHHHHH--HhCCCCcEEecCCCCCCCH--HHHHHHHhhCCCCCEEEeCCCCCCCHH
Q 021374 159 QHLVKNCKHIIDLNLSGCKNLLDKSLQLIA--DNYQELESLNLTRCVKLTD--GGLQKILIKCSSLRSLNLYALSGFTDE 234 (313)
Q Consensus 159 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~--~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~ 234 (313)
. .+..+++|++|+++++...+...+..-. ..+++|+.|+++++ .+.. .....++..+++|+.|+++++ .+...
T Consensus 167 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~ 243 (312)
T 1wwl_A 167 E-QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHN-SLRDA 243 (312)
T ss_dssp T-TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSS
T ss_pred H-HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCC-cCCcc
Confidence 2 2346889999999996433322222222 45799999999995 6663 223345568899999999984 45432
Q ss_pred H-HHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374 235 A-YKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM 305 (313)
Q Consensus 235 ~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 305 (313)
. ...+..+++|++|++++| .++. ....+. ++|++|++++| .+++.. . +..+++|+.|++++|.
T Consensus 244 ~~~~~~~~l~~L~~L~Ls~N-~l~~-ip~~~~--~~L~~L~Ls~N-~l~~~p--~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 244 AGAPSCDWPSQLNSLNLSFT-GLKQ-VPKGLP--AKLSVLDLSYN-RLDRNP--S-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCCSCCCCCTTCCEEECTTS-CCSS-CCSSCC--SEEEEEECCSS-CCCSCC--C-TTTSCEEEEEECTTCT
T ss_pred cchhhhhhcCCCCEEECCCC-ccCh-hhhhcc--CCceEEECCCC-CCCCCh--h-HhhCCCCCEEeccCCC
Confidence 2 123345789999999999 5652 111122 79999999998 776652 2 4578999999999885
No 37
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.40 E-value=7.7e-16 Score=127.85 Aligned_cols=206 Identities=19% Similarity=0.211 Sum_probs=138.7
Q ss_pred cCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHH-HHHHHhcCCCCcEEEecCCcccCHHHHHHH
Q 021374 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKG-IEIISSTCPELKVFSIYWNVRVTDIGIQHL 161 (313)
Q Consensus 83 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 161 (313)
.++++.|+++++. ++. +....+..+++|+.|+++++ .+...+ .......+++|++|+++++ .+.. +...
T Consensus 27 ~~~l~~L~L~~n~-l~~-----i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~--l~~~ 96 (306)
T 2z66_A 27 PSSATRLELESNK-LQS-----LPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFN-GVIT--MSSN 96 (306)
T ss_dssp CTTCCEEECCSSC-CCC-----CCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSC-SEEE--EEEE
T ss_pred CCCCCEEECCCCc-cCc-----cCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCC-cccc--Chhh
Confidence 3689999999864 332 11122457799999999986 444221 0111245899999999988 4432 1111
Q ss_pred HhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCH-HHHHHhh
Q 021374 162 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTD-EAYKKIS 240 (313)
Q Consensus 162 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~ 240 (313)
...+++|++|+++++ .++..........+++|+.|+++++ .+... ....+..+++|+.|+++++ .+.+ .....+.
T Consensus 97 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~ 172 (306)
T 2z66_A 97 FLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVA-FNGIFNGLSSLEVLKMAGN-SFQENFLPDIFT 172 (306)
T ss_dssp EETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTS-CCEEC-STTTTTTCTTCCEEECTTC-EEGGGEECSCCT
T ss_pred cCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCC-cCCcc-chhhcccCcCCCEEECCCC-ccccccchhHHh
Confidence 346899999999986 3443222112345899999999985 44321 1223567899999999985 3433 2234566
Q ss_pred cCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374 241 LLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM 305 (313)
Q Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 305 (313)
.+++|++|++++| .++......+.++++|++|++++| .++...... +..+++|+.|++++|.
T Consensus 173 ~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 173 ELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFP-YKCLNSLQVLDYSLNH 234 (306)
T ss_dssp TCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGG-GTTCTTCCEEECTTSC
T ss_pred hCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCC-ccCccChhh-ccCcccCCEeECCCCC
Confidence 8899999999999 676654556778999999999998 565433222 3468999999999885
No 38
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.39 E-value=1.3e-14 Score=122.98 Aligned_cols=208 Identities=16% Similarity=0.095 Sum_probs=140.4
Q ss_pred cCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHH
Q 021374 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV 162 (313)
Q Consensus 83 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 162 (313)
.++++.|+++++. ++... ...+..+++|+.|+++++ .++..... ....+++|++|+++++ .++.... ...
T Consensus 51 ~~~L~~L~l~~n~-i~~~~-----~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~~-~~~ 120 (353)
T 2z80_A 51 TEAVKSLDLSNNR-ITYIS-----NSDLQRCVNLQALVLTSN-GINTIEED-SFSSLGSLEHLDLSYN-YLSNLSS-SWF 120 (353)
T ss_dssp CTTCCEEECTTSC-CCEEC-----TTTTTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCSSCCH-HHH
T ss_pred cccCcEEECCCCc-CcccC-----HHHhccCCCCCEEECCCC-ccCccCHh-hcCCCCCCCEEECCCC-cCCcCCH-hHh
Confidence 3689999999864 43211 112457799999999986 44433221 2256899999999988 5554322 224
Q ss_pred hcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcC
Q 021374 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL 242 (313)
Q Consensus 163 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 242 (313)
..+++|++|+++++ .++..........+++|+.|+++++..+.... ...+..+++|+.|+++++ .+.......+..+
T Consensus 121 ~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l 197 (353)
T 2z80_A 121 KPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ-RKDFAGLTFLEELEIDAS-DLQSYEPKSLKSI 197 (353)
T ss_dssp TTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEET-TCCEECTTTTTTC
T ss_pred CCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccC-HHHccCCCCCCEEECCCC-CcCccCHHHHhcc
Confidence 56899999999986 44431110123458999999999864444311 123467899999999984 4555445667789
Q ss_pred CCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCCh---------------------------HH---HHHHHHh
Q 021374 243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITD---------------------------VG---VMAIAEG 292 (313)
Q Consensus 243 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---------------------------~~---~~~l~~~ 292 (313)
++|++|++++| .++......+..+++|++|++++| .++. .. +...+..
T Consensus 198 ~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~ 275 (353)
T 2z80_A 198 QNVSHLILHMK-QHILLLEIFVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ 275 (353)
T ss_dssp SEEEEEEEECS-CSTTHHHHHHHHTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHT
T ss_pred ccCCeecCCCC-ccccchhhhhhhcccccEEECCCC-ccccccccccccccccchhhccccccccccCcchhhhHHHHhc
Confidence 99999999999 565544444556889999999887 4443 11 2334457
Q ss_pred CCCccEeecCCcc
Q 021374 293 CSSLEFLSSGAEM 305 (313)
Q Consensus 293 ~~~L~~L~l~~~~ 305 (313)
+++|+.|++++|.
T Consensus 276 l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 276 ISGLLELEFSRNQ 288 (353)
T ss_dssp CTTCCEEECCSSC
T ss_pred ccCCCEEECCCCC
Confidence 8999999999884
No 39
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.39 E-value=9e-15 Score=128.04 Aligned_cols=204 Identities=18% Similarity=0.140 Sum_probs=141.8
Q ss_pred cCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHH
Q 021374 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV 162 (313)
Q Consensus 83 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 162 (313)
.++++.|+++++. ++... ...+..+++|+.|+++++ .+....... ...+++|++|+|+++ .++... ...+
T Consensus 74 ~~~l~~L~L~~n~-i~~~~-----~~~~~~l~~L~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~ 143 (452)
T 3zyi_A 74 PSNTRYLNLMENN-IQMIQ-----ADTFRHLHHLEVLQLGRN-SIRQIEVGA-FNGLASLNTLELFDN-WLTVIP-SGAF 143 (452)
T ss_dssp CTTCSEEECCSSC-CCEEC-----TTTTTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCSBCC-TTTS
T ss_pred CCCccEEECcCCc-CceEC-----HHHcCCCCCCCEEECCCC-ccCCcChhh-ccCcccCCEEECCCC-cCCccC-hhhh
Confidence 3689999999864 33211 112457799999999986 444332222 256899999999988 554321 1223
Q ss_pred hcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcC
Q 021374 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL 242 (313)
Q Consensus 163 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 242 (313)
..+++|++|+++++ .++.... .....+++|+.|++++++.+..... ..+..+++|+.|+++++ .+... ..+..+
T Consensus 144 ~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n-~l~~~--~~~~~l 217 (452)
T 3zyi_A 144 EYLSKLRELWLRNN-PIESIPS-YAFNRVPSLMRLDLGELKKLEYISE-GAFEGLFNLKYLNLGMC-NIKDM--PNLTPL 217 (452)
T ss_dssp SSCTTCCEEECCSC-CCCEECT-TTTTTCTTCCEEECCCCTTCCEECT-TTTTTCTTCCEEECTTS-CCSSC--CCCTTC
T ss_pred cccCCCCEEECCCC-CcceeCH-hHHhcCCcccEEeCCCCCCccccCh-hhccCCCCCCEEECCCC-ccccc--cccccc
Confidence 46899999999986 4443211 1223589999999998766543211 12467899999999985 44432 346678
Q ss_pred CCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374 243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM 305 (313)
Q Consensus 243 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 305 (313)
++|++|++++| .++......+.++++|++|++++| .++...... +..+++|+.|++++|.
T Consensus 218 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 218 VGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNA-FDGLASLVELNLAHNN 277 (452)
T ss_dssp TTCCEEECTTS-CCSEECGGGGTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSSC
T ss_pred ccccEEECcCC-cCcccCcccccCccCCCEEEeCCC-cCceECHHH-hcCCCCCCEEECCCCc
Confidence 99999999999 676655566788999999999998 666544333 3468999999999884
No 40
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.39 E-value=3e-14 Score=131.07 Aligned_cols=168 Identities=23% Similarity=0.199 Sum_probs=106.8
Q ss_pred cCCCCcEEEecCCcccCH-HHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHH------
Q 021374 138 TCPELKVFSIYWNVRVTD-IGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGL------ 210 (313)
Q Consensus 138 ~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~------ 210 (313)
.+++|+.|++.++ .+.. .........+++|+.|+++++ .++.... .....+++|+.|+++++ .+.....
T Consensus 452 ~~~~L~~L~l~~n-~l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~ 527 (680)
T 1ziw_A 452 LVPSLQRLMLRRV-ALKNVDSSPSPFQPLRNLTILDLSNN-NIANIND-DMLEGLEKLEILDLQHN-NLARLWKHANPGG 527 (680)
T ss_dssp TCTTCCEEECTTS-CCBCTTCSSCTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCGGGGSTTSTTS
T ss_pred cCcccccchhccc-cccccccCCcccccCCCCCEEECCCC-CCCcCCh-hhhccccccCEEeCCCC-CccccchhhccCC
Confidence 3556666666554 2211 011112345678888888875 3433111 11234788888888884 4432100
Q ss_pred -HHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHH
Q 021374 211 -QKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAI 289 (313)
Q Consensus 211 -~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l 289 (313)
...+.++++|+.|+++++ .+.......+..+++|++|++++| .++......+.++++|++|++++| .++......+
T Consensus 528 ~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~ 604 (680)
T 1ziw_A 528 PIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVF 604 (680)
T ss_dssp CCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHH
T ss_pred cchhhcCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHh
Confidence 011466788999999874 444333334677889999999988 666443344567899999999998 7766554444
Q ss_pred HHhCCCccEeecCCccccccccC
Q 021374 290 AEGCSSLEFLSSGAEMNCCSCSH 312 (313)
Q Consensus 290 ~~~~~~L~~L~l~~~~~~~~~~~ 312 (313)
...+++|+.|++++|.--|.|+.
T Consensus 605 ~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 605 GPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp HHHHTTCSEEECTTCCCCBCCCC
T ss_pred cccccccCEEEccCCCcccCCcc
Confidence 44678999999999999999963
No 41
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.38 E-value=1.3e-12 Score=114.68 Aligned_cols=100 Identities=22% Similarity=0.285 Sum_probs=51.6
Q ss_pred CCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCC
Q 021374 191 YQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNL 270 (313)
Q Consensus 191 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 270 (313)
+++|+.|+++++ .+.+ +.. +..+++|+.|+++++ .+.+.. .+..+++|++|++++| .+++. ..+.++++|
T Consensus 286 l~~L~~L~L~~n-~l~~--~~~-~~~l~~L~~L~L~~n-~l~~~~--~~~~l~~L~~L~l~~n-~l~~~--~~l~~l~~L 355 (466)
T 1o6v_A 286 LTALTNLELNEN-QLED--ISP-ISNLKNLTYLTLYFN-NISDIS--PVSSLTKLQRLFFYNN-KVSDV--SSLANLTNI 355 (466)
T ss_dssp CTTCSEEECCSS-CCSC--CGG-GGGCTTCSEEECCSS-CCSCCG--GGGGCTTCCEEECCSS-CCCCC--GGGTTCTTC
T ss_pred CCccCeEEcCCC-cccC--chh-hcCCCCCCEEECcCC-cCCCch--hhccCccCCEeECCCC-ccCCc--hhhccCCCC
Confidence 455555555553 2222 111 345555666666553 232221 1445666666666666 34332 235566677
Q ss_pred ceeeccCCCCCChHHHHHHHHhCCCccEeecCCc
Q 021374 271 VSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAE 304 (313)
Q Consensus 271 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 304 (313)
++|++++| .+++... ...+++|+.|++++|
T Consensus 356 ~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 356 NWLSAGHN-QISDLTP---LANLTRITQLGLNDQ 385 (466)
T ss_dssp CEEECCSS-CCCBCGG---GTTCTTCCEEECCCE
T ss_pred CEEeCCCC-ccCccch---hhcCCCCCEEeccCC
Confidence 77777666 4444332 345667777777665
No 42
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.38 E-value=1.8e-14 Score=118.37 Aligned_cols=182 Identities=20% Similarity=0.156 Sum_probs=127.5
Q ss_pred CCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCC
Q 021374 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ 192 (313)
Q Consensus 113 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~ 192 (313)
.++|+.|+++++ .++...... ...+++|++|+++++ .++..... .+..+++|++|+++++..++...... ...++
T Consensus 31 ~~~l~~L~l~~n-~i~~~~~~~-~~~~~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~~~-~~~l~ 105 (285)
T 1ozn_A 31 PAASQRIFLHGN-RISHVPAAS-FRACRNLTILWLHSN-VLARIDAA-AFTGLALLEQLDLSDNAQLRSVDPAT-FHGLG 105 (285)
T ss_dssp CTTCSEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSCTTCCCCCTTT-TTTCT
T ss_pred CCCceEEEeeCC-cCCccCHHH-cccCCCCCEEECCCC-ccceeCHh-hcCCccCCCEEeCCCCCCccccCHHH-hcCCc
Confidence 378999999986 444432222 266899999999988 55543222 23468999999999964344322222 23479
Q ss_pred CCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCce
Q 021374 193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVS 272 (313)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 272 (313)
+|++|+++++ .+... ....+..+++|+.|+++++ .+.......+..+++|++|++++| .++......+.++++|++
T Consensus 106 ~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~ 181 (285)
T 1ozn_A 106 RLHTLHLDRC-GLQEL-GPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDR 181 (285)
T ss_dssp TCCEEECTTS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCC-cCCEE-CHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccCE
Confidence 9999999995 44431 1223567899999999984 454433445678899999999999 666544445778999999
Q ss_pred eeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374 273 LNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM 305 (313)
Q Consensus 273 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 305 (313)
|++++| .++......+ ..+++|+.|++++|.
T Consensus 182 L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 182 LLLHQN-RVAHVHPHAF-RDLGRLMTLYLFANN 212 (285)
T ss_dssp EECCSS-CCCEECTTTT-TTCTTCCEEECCSSC
T ss_pred EECCCC-cccccCHhHc-cCcccccEeeCCCCc
Confidence 999998 6765543333 368999999999874
No 43
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.38 E-value=1.9e-12 Score=113.73 Aligned_cols=168 Identities=23% Similarity=0.269 Sum_probs=95.0
Q ss_pred CCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhC
Q 021374 112 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY 191 (313)
Q Consensus 112 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 191 (313)
.+++|+.|+++++....... ...+++|+.|+++++ .+.+. . ....+++|++|+++++. ++... . ...+
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n-~l~~~--~-~l~~l~~L~~L~l~~n~-l~~~~--~-~~~l 264 (466)
T 1o6v_A 197 KLTNLESLIATNNQISDITP----LGILTNLDELSLNGN-QLKDI--G-TLASLTNLTDLDLANNQ-ISNLA--P-LSGL 264 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSS-CCCCC--G-GGGGCTTCSEEECCSSC-CCCCG--G-GTTC
T ss_pred cCCCCCEEEecCCccccccc----ccccCCCCEEECCCC-Ccccc--h-hhhcCCCCCEEECCCCc-cccch--h-hhcC
Confidence 44666666666542211111 244566666666665 33322 1 12356677777777653 32211 1 2346
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCc
Q 021374 192 QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLV 271 (313)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 271 (313)
++|+.|+++++ .+... .. +..+++|+.|+++++ .+.+. ..+..+++|++|++++| .+++... +..+++|+
T Consensus 265 ~~L~~L~l~~n-~l~~~--~~-~~~l~~L~~L~L~~n-~l~~~--~~~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~ 334 (466)
T 1o6v_A 265 TKLTELKLGAN-QISNI--SP-LAGLTALTNLELNEN-QLEDI--SPISNLKNLTYLTLYFN-NISDISP--VSSLTKLQ 334 (466)
T ss_dssp TTCSEEECCSS-CCCCC--GG-GTTCTTCSEEECCSS-CCSCC--GGGGGCTTCSEEECCSS-CCSCCGG--GGGCTTCC
T ss_pred CCCCEEECCCC-ccCcc--cc-ccCCCccCeEEcCCC-cccCc--hhhcCCCCCCEEECcCC-cCCCchh--hccCccCC
Confidence 77777777764 33321 11 456677777777764 33321 22567778888888777 4544322 56678888
Q ss_pred eeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374 272 SLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM 305 (313)
Q Consensus 272 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 305 (313)
+|++++| .+++. . -...+++|+.|++++|.
T Consensus 335 ~L~l~~n-~l~~~--~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 335 RLFFYNN-KVSDV--S-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp EEECCSS-CCCCC--G-GGTTCTTCCEEECCSSC
T ss_pred EeECCCC-ccCCc--h-hhccCCCCCEEeCCCCc
Confidence 8888877 55543 1 23367788888887764
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.38 E-value=3.2e-14 Score=119.39 Aligned_cols=177 Identities=16% Similarity=0.146 Sum_probs=76.2
Q ss_pred cccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHH
Q 021374 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (313)
Q Consensus 81 ~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 160 (313)
..+++|+.|+++++. ++... ...+..+++|++|+++++ .++.... ...++|++|+++++ .+..... .
T Consensus 73 ~~l~~L~~L~L~~n~-l~~~~-----~~~~~~l~~L~~L~Ls~n-~l~~l~~----~~~~~L~~L~l~~n-~l~~~~~-~ 139 (330)
T 1xku_A 73 KNLKNLHTLILINNK-ISKIS-----PGAFAPLVKLERLYLSKN-QLKELPE----KMPKTLQELRVHEN-EITKVRK-S 139 (330)
T ss_dssp TTCTTCCEEECCSSC-CCCBC-----TTTTTTCTTCCEEECCSS-CCSBCCS----SCCTTCCEEECCSS-CCCBBCH-H
T ss_pred ccCCCCCEEECCCCc-CCeeC-----HHHhcCCCCCCEEECCCC-cCCccCh----hhcccccEEECCCC-cccccCH-h
Confidence 356777777777653 22211 111345567777777664 2221110 11256666666655 3332211 1
Q ss_pred HHhcCCCCcEEeccCCcccchH-HHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHh
Q 021374 161 LVKNCKHIIDLNLSGCKNLLDK-SLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKI 239 (313)
Q Consensus 161 ~~~~~~~L~~L~l~~~~~~~~~-~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 239 (313)
....+++|+.|+++++. ++.. ........+++|+.|+++++ .+.. +.. ...++|+.|+++++ .+.......+
T Consensus 140 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~--l~~--~~~~~L~~L~l~~n-~l~~~~~~~~ 212 (330)
T 1xku_A 140 VFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADT-NITT--IPQ--GLPPSLTELHLDGN-KITKVDAASL 212 (330)
T ss_dssp HHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSS-CCCS--CCS--SCCTTCSEEECTTS-CCCEECTGGG
T ss_pred HhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCC-cccc--CCc--cccccCCEEECCCC-cCCccCHHHh
Confidence 22345666666666542 2210 01111123555666655553 2221 000 01134555555442 2332222334
Q ss_pred hcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCC
Q 021374 240 SLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWC 278 (313)
Q Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 278 (313)
..+++|++|++++| .++......+..+++|++|++++|
T Consensus 213 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N 250 (330)
T 1xku_A 213 KGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNN 250 (330)
T ss_dssp TTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSS
T ss_pred cCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCC
Confidence 44455555555554 333322222344445555555444
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.37 E-value=7.6e-15 Score=122.91 Aligned_cols=203 Identities=19% Similarity=0.182 Sum_probs=133.3
Q ss_pred ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHH
Q 021374 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 161 (313)
Q Consensus 82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 161 (313)
.+++|+.|+++++. +.. .. ..+..+++|+.|+++++ .+.. +......+++|++|++++|...... ...+
T Consensus 102 ~l~~L~~L~L~~n~-l~~-lp-----~~~~~l~~L~~L~Ls~n-~l~~--lp~~l~~l~~L~~L~L~~n~~~~~~-p~~~ 170 (328)
T 4fcg_A 102 RLSHLQHMTIDAAG-LME-LP-----DTMQQFAGLETLTLARN-PLRA--LPASIASLNRLRELSIRACPELTEL-PEPL 170 (328)
T ss_dssp GGTTCSEEEEESSC-CCC-CC-----SCGGGGTTCSEEEEESC-CCCC--CCGGGGGCTTCCEEEEEEETTCCCC-CSCS
T ss_pred hCCCCCEEECCCCC-ccc-hh-----HHHhccCCCCEEECCCC-cccc--CcHHHhcCcCCCEEECCCCCCcccc-ChhH
Confidence 36788888888753 321 00 11345688999999886 3331 2222367889999999876332211 0011
Q ss_pred --------HhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCH
Q 021374 162 --------VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTD 233 (313)
Q Consensus 162 --------~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 233 (313)
...+++|++|+++++ .++. ++.....+++|+.|+++++ .+.. +...+..+++|+.|+++++... .
T Consensus 171 ~~~~~~~~~~~l~~L~~L~L~~n-~l~~--lp~~l~~l~~L~~L~L~~N-~l~~--l~~~l~~l~~L~~L~Ls~n~~~-~ 243 (328)
T 4fcg_A 171 ASTDASGEHQGLVNLQSLRLEWT-GIRS--LPASIANLQNLKSLKIRNS-PLSA--LGPAIHHLPKLEELDLRGCTAL-R 243 (328)
T ss_dssp EEEC-CCCEEESTTCCEEEEEEE-CCCC--CCGGGGGCTTCCEEEEESS-CCCC--CCGGGGGCTTCCEEECTTCTTC-C
T ss_pred hhccchhhhccCCCCCEEECcCC-CcCc--chHhhcCCCCCCEEEccCC-CCCc--CchhhccCCCCCEEECcCCcch-h
Confidence 123789999999886 4442 2222345899999999995 5543 3333678899999999986433 3
Q ss_pred HHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374 234 EAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM 305 (313)
Q Consensus 234 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 305 (313)
.....+..+++|++|++++|... ......+.++++|++|++++|...+ ..... +..+++|+.+++..+.
T Consensus 244 ~~p~~~~~l~~L~~L~L~~n~~~-~~~p~~~~~l~~L~~L~L~~n~~~~-~iP~~-l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 244 NYPPIFGGRAPLKRLILKDCSNL-LTLPLDIHRLTQLEKLDLRGCVNLS-RLPSL-IAQLPANCIILVPPHL 312 (328)
T ss_dssp BCCCCTTCCCCCCEEECTTCTTC-CBCCTTGGGCTTCCEEECTTCTTCC-CCCGG-GGGSCTTCEEECCGGG
T ss_pred hhHHHhcCCCCCCEEECCCCCch-hhcchhhhcCCCCCEEeCCCCCchh-hccHH-HhhccCceEEeCCHHH
Confidence 33445678999999999998443 3333457789999999999984433 32232 3468999999987653
No 46
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.37 E-value=6.7e-13 Score=110.09 Aligned_cols=166 Identities=24% Similarity=0.285 Sum_probs=123.9
Q ss_pred CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCC
Q 021374 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (313)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~ 193 (313)
++|+.|+++++ .+... .. ...+++|++|+++++ .+.+... ...+++|++|+++++. ++.. ..+ ..+++
T Consensus 41 ~~L~~L~l~~~-~i~~l--~~-~~~l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~n~-l~~~--~~~-~~l~~ 108 (308)
T 1h6u_A 41 DGITTLSAFGT-GVTTI--EG-VQYLNNLIGLELKDN-QITDLAP---LKNLTKITELELSGNP-LKNV--SAI-AGLQS 108 (308)
T ss_dssp HTCCEEECTTS-CCCCC--TT-GGGCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSCC-CSCC--GGG-TTCTT
T ss_pred CCcCEEEeeCC-CccCc--hh-hhccCCCCEEEccCC-cCCCChh---HccCCCCCEEEccCCc-CCCc--hhh-cCCCC
Confidence 78999999987 33332 12 367899999999988 5554322 4678999999999964 5442 233 34899
Q ss_pred CcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCcee
Q 021374 194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSL 273 (313)
Q Consensus 194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 273 (313)
|+.|+++++ .+.+ +.. +..+++|+.|+++++ .+... ..+..+++|++|++++| .+++.. .+.++++|++|
T Consensus 109 L~~L~l~~n-~l~~--~~~-l~~l~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L 178 (308)
T 1h6u_A 109 IKTLDLTST-QITD--VTP-LAGLSNLQVLYLDLN-QITNI--SPLAGLTNLQYLSIGNA-QVSDLT--PLANLSKLTTL 178 (308)
T ss_dssp CCEEECTTS-CCCC--CGG-GTTCTTCCEEECCSS-CCCCC--GGGGGCTTCCEEECCSS-CCCCCG--GGTTCTTCCEE
T ss_pred CCEEECCCC-CCCC--chh-hcCCCCCCEEECCCC-ccCcC--ccccCCCCccEEEccCC-cCCCCh--hhcCCCCCCEE
Confidence 999999995 5554 222 578899999999985 44432 22778999999999999 566532 27889999999
Q ss_pred eccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374 274 NLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM 305 (313)
Q Consensus 274 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 305 (313)
++++| .+++... ...+++|+.|++++|.
T Consensus 179 ~l~~n-~l~~~~~---l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 179 KADDN-KISDISP---LASLPNLIEVHLKNNQ 206 (308)
T ss_dssp ECCSS-CCCCCGG---GGGCTTCCEEECTTSC
T ss_pred ECCCC-ccCcChh---hcCCCCCCEEEccCCc
Confidence 99998 6665432 4578999999999885
No 47
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.37 E-value=1.8e-14 Score=125.74 Aligned_cols=204 Identities=21% Similarity=0.190 Sum_probs=141.4
Q ss_pred cCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHH
Q 021374 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV 162 (313)
Q Consensus 83 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 162 (313)
.++++.|+++++. +..... ..+..+++|+.|+|+++ .+...... ....+++|++|+|+++ .++... ...+
T Consensus 63 ~~~l~~L~L~~n~-i~~~~~-----~~~~~l~~L~~L~Ls~n-~i~~i~~~-~~~~l~~L~~L~L~~n-~l~~~~-~~~~ 132 (440)
T 3zyj_A 63 STNTRLLNLHENQ-IQIIKV-----NSFKHLRHLEILQLSRN-HIRTIEIG-AFNGLANLNTLELFDN-RLTTIP-NGAF 132 (440)
T ss_dssp CTTCSEEECCSCC-CCEECT-----TTTSSCSSCCEEECCSS-CCCEECGG-GGTTCSSCCEEECCSS-CCSSCC-TTTS
T ss_pred CCCCcEEEccCCc-CCeeCH-----HHhhCCCCCCEEECCCC-cCCccChh-hccCCccCCEEECCCC-cCCeeC-HhHh
Confidence 3678999999864 332211 12467899999999986 44433222 2366899999999988 554321 1123
Q ss_pred hcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcC
Q 021374 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL 242 (313)
Q Consensus 163 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 242 (313)
..+++|++|+++++ .++..... ....+++|+.|++++++.+.... ...+.++++|+.|+++++ .+.. +..+..+
T Consensus 133 ~~l~~L~~L~L~~N-~i~~~~~~-~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n-~l~~--~~~~~~l 206 (440)
T 3zyj_A 133 VYLSKLKELWLRNN-PIESIPSY-AFNRIPSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMC-NLRE--IPNLTPL 206 (440)
T ss_dssp CSCSSCCEEECCSC-CCCEECTT-TTTTCTTCCEEECCCCTTCCEEC-TTTTTTCSSCCEEECTTS-CCSS--CCCCTTC
T ss_pred hccccCceeeCCCC-cccccCHH-HhhhCcccCEeCCCCCCCcceeC-cchhhcccccCeecCCCC-cCcc--ccccCCC
Confidence 56799999999985 34432111 22358999999999865554311 113567899999999985 4432 2236678
Q ss_pred CCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374 243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM 305 (313)
Q Consensus 243 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 305 (313)
++|++|++++| .++......+.++++|++|++++| .++......+ ..+++|+.|+|++|.
T Consensus 207 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 207 IKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAF-DNLQSLVEINLAHNN 266 (440)
T ss_dssp SSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTC-CCCEECTTSS-TTCTTCCEEECTTSC
T ss_pred cccCEEECCCC-ccCccChhhhccCccCCEEECCCC-ceeEEChhhh-cCCCCCCEEECCCCC
Confidence 99999999999 676655556788999999999998 6765543333 368999999999884
No 48
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.36 E-value=2e-13 Score=105.72 Aligned_cols=149 Identities=21% Similarity=0.233 Sum_probs=79.3
Q ss_pred CCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCC
Q 021374 140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSS 219 (313)
Q Consensus 140 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 219 (313)
++|+.|+++++ .+++. .. ...+++|++|+++++ .+++. ..+ ..+++|++|+++++ .+.+.... .+..+++
T Consensus 44 ~~L~~L~l~~n-~i~~l--~~-l~~l~~L~~L~l~~n-~~~~~--~~l-~~l~~L~~L~l~~n-~l~~~~~~-~l~~l~~ 113 (197)
T 4ezg_A 44 NSLTYITLANI-NVTDL--TG-IEYAHNIKDLTINNI-HATNY--NPI-SGLSNLERLRIMGK-DVTSDKIP-NLSGLTS 113 (197)
T ss_dssp HTCCEEEEESS-CCSCC--TT-GGGCTTCSEEEEESC-CCSCC--GGG-TTCTTCCEEEEECT-TCBGGGSC-CCTTCTT
T ss_pred CCccEEeccCC-CccCh--HH-HhcCCCCCEEEccCC-CCCcc--hhh-hcCCCCCEEEeECC-ccCcccCh-hhcCCCC
Confidence 45555555554 33321 11 234556666666654 23221 112 23566666666663 34332111 1345666
Q ss_pred CCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEe
Q 021374 220 LRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFL 299 (313)
Q Consensus 220 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 299 (313)
|+.|+++++ .+.+..+..+..+++|++|++++|..+++. ..+.++++|++|++++| .+++.. ....+++|+.|
T Consensus 114 L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~--~~l~~l~~L~~L~l~~n-~i~~~~---~l~~l~~L~~L 186 (197)
T 4ezg_A 114 LTLLDISHS-AHDDSILTKINTLPKVNSIDLSYNGAITDI--MPLKTLPELKSLNIQFD-GVHDYR---GIEDFPKLNQL 186 (197)
T ss_dssp CCEEECCSS-BCBGGGHHHHTTCSSCCEEECCSCTBCCCC--GGGGGCSSCCEEECTTB-CCCCCT---TGGGCSSCCEE
T ss_pred CCEEEecCC-ccCcHhHHHHhhCCCCCEEEccCCCCcccc--HhhcCCCCCCEEECCCC-CCcChH---HhccCCCCCEE
Confidence 777777663 455545556666777777777776424442 23566777777777776 555432 23356777777
Q ss_pred ecCCcc
Q 021374 300 SSGAEM 305 (313)
Q Consensus 300 ~l~~~~ 305 (313)
++++|.
T Consensus 187 ~l~~N~ 192 (197)
T 4ezg_A 187 YAFSQT 192 (197)
T ss_dssp EECBC-
T ss_pred EeeCcc
Confidence 777664
No 49
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.36 E-value=6.1e-15 Score=133.91 Aligned_cols=86 Identities=16% Similarity=0.231 Sum_probs=35.9
Q ss_pred hhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHH---HHhhCCCCCceeeccCCCCCChHHHHHHHH
Q 021374 215 IKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGL---ACIAKCKNLVSLNLTWCVRITDVGVMAIAE 291 (313)
Q Consensus 215 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~ 291 (313)
..+++|+.|+++++ .+.......+..+++|++|++++| .+++..+ ..+..+++|++|++++| .++......+ .
T Consensus 422 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~ 497 (606)
T 3t6q_A 422 QNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAF-T 497 (606)
T ss_dssp TTCTTCCEEECTTC-CCBTTCTTTTTTCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTTT-T
T ss_pred hCcccCCEEECCCC-ccCCcCHHHHhCCCCCCEEECCCC-CCCccccccchhhccCCCccEEECCCC-ccCccChhhh-c
Confidence 34455555555542 222222233344555555555555 2322111 12334455555555554 3333222111 2
Q ss_pred hCCCccEeecCCc
Q 021374 292 GCSSLEFLSSGAE 304 (313)
Q Consensus 292 ~~~~L~~L~l~~~ 304 (313)
.+++|+.|++++|
T Consensus 498 ~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 498 SLKMMNHVDLSHN 510 (606)
T ss_dssp TCTTCCEEECCSS
T ss_pred cccCCCEEECCCC
Confidence 3455555555544
No 50
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.35 E-value=2.3e-14 Score=126.36 Aligned_cols=207 Identities=18% Similarity=0.175 Sum_probs=109.2
Q ss_pred cccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHH
Q 021374 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (313)
Q Consensus 81 ~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 160 (313)
..+++|+.|+++++. ++.. ....+..+++|+.|+++++ .+..... .....+++|++|+++++ .+.......
T Consensus 77 ~~l~~L~~L~L~~n~-l~~~-----~~~~~~~l~~L~~L~Ls~n-~i~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~ 147 (477)
T 2id5_A 77 NNLFNLRTLGLRSNR-LKLI-----PLGVFTGLSNLTKLDISEN-KIVILLD-YMFQDLYNLKSLEVGDN-DLVYISHRA 147 (477)
T ss_dssp TTCTTCCEEECCSSC-CCSC-----CTTSSTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEEECCT-TCCEECTTS
T ss_pred hCCccCCEEECCCCc-CCcc-----CcccccCCCCCCEEECCCC-ccccCCh-hHccccccCCEEECCCC-ccceeChhh
Confidence 356778888887653 2211 1111345577777777765 3222111 11245667777777665 333221111
Q ss_pred HHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCC----------------------
Q 021374 161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCS---------------------- 218 (313)
Q Consensus 161 ~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~---------------------- 218 (313)
+..+++|++|+++++ .++..... ....+++|+.|++.++ .+.... ...+..++
T Consensus 148 -~~~l~~L~~L~l~~n-~l~~~~~~-~l~~l~~L~~L~l~~n-~i~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 222 (477)
T 2id5_A 148 -FSGLNSLEQLTLEKC-NLTSIPTE-ALSHLHGLIVLRLRHL-NINAIR-DYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222 (477)
T ss_dssp -STTCTTCCEEEEESC-CCSSCCHH-HHTTCTTCCEEEEESC-CCCEEC-TTCSCSCTTCCEEEEECCTTCCEECTTTTT
T ss_pred -ccCCCCCCEEECCCC-cCcccChh-HhcccCCCcEEeCCCC-cCcEeC-hhhcccCcccceeeCCCCccccccCccccc
Confidence 134566666666664 23322111 1223556666666552 222100 00112333
Q ss_pred --CCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCc
Q 021374 219 --SLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSL 296 (313)
Q Consensus 219 --~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 296 (313)
+|+.|+++++ .+.......+..+++|++|++++| .++......+.++++|++|++++| .++......+ ..+++|
T Consensus 223 ~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L 298 (477)
T 2id5_A 223 GLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAF-RGLNYL 298 (477)
T ss_dssp TCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSS-CCSEECTTTB-TTCTTC
T ss_pred CccccEEECcCC-cccccCHHHhcCccccCeeECCCC-cCCccChhhccccccCCEEECCCC-ccceECHHHh-cCcccC
Confidence 5555555553 344333445667788888888887 455443344567788888888877 5555433322 367888
Q ss_pred cEeecCCcc
Q 021374 297 EFLSSGAEM 305 (313)
Q Consensus 297 ~~L~l~~~~ 305 (313)
+.|++++|.
T Consensus 299 ~~L~L~~N~ 307 (477)
T 2id5_A 299 RVLNVSGNQ 307 (477)
T ss_dssp CEEECCSSC
T ss_pred CEEECCCCc
Confidence 888888774
No 51
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.35 E-value=1.5e-12 Score=107.03 Aligned_cols=145 Identities=28% Similarity=0.289 Sum_probs=60.9
Q ss_pred CCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhC
Q 021374 112 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY 191 (313)
Q Consensus 112 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 191 (313)
.+++|+.|+++++ .++.... ...+++|+.|+++++ .++.. .. ...+++|++|+++++ .+++. ..+ ..+
T Consensus 66 ~l~~L~~L~L~~n-~l~~~~~---l~~l~~L~~L~l~~n-~l~~~--~~-l~~l~~L~~L~L~~n-~i~~~--~~l-~~l 133 (291)
T 1h6t_A 66 YLPNVTKLFLNGN-KLTDIKP---LANLKNLGWLFLDEN-KVKDL--SS-LKDLKKLKSLSLEHN-GISDI--NGL-VHL 133 (291)
T ss_dssp GCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCG--GG-GTTCTTCCEEECTTS-CCCCC--GGG-GGC
T ss_pred cCCCCCEEEccCC-ccCCCcc---cccCCCCCEEECCCC-cCCCC--hh-hccCCCCCEEECCCC-cCCCC--hhh-cCC
Confidence 3455666666554 2222111 244555555555555 33321 11 234455555555553 22221 111 224
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCc
Q 021374 192 QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLV 271 (313)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 271 (313)
++|+.|+++++ .+... ..+..+++|+.|+++++ .+.+... +..+++|++|++++| .+++. ..+..+++|+
T Consensus 134 ~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~L~~N-~i~~l--~~l~~l~~L~ 203 (291)
T 1h6t_A 134 PQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKN-HISDL--RALAGLKNLD 203 (291)
T ss_dssp TTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSS-CCCBC--GGGTTCTTCS
T ss_pred CCCCEEEccCC-cCCcc---hhhccCCCCCEEEccCC-ccccchh--hcCCCccCEEECCCC-cCCCC--hhhccCCCCC
Confidence 55555555552 33221 12334455555555442 2222111 444455555555554 33321 1234445555
Q ss_pred eeeccCC
Q 021374 272 SLNLTWC 278 (313)
Q Consensus 272 ~L~l~~~ 278 (313)
.|++++|
T Consensus 204 ~L~l~~n 210 (291)
T 1h6t_A 204 VLELFSQ 210 (291)
T ss_dssp EEEEEEE
T ss_pred EEECcCC
Confidence 5555444
No 52
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.34 E-value=5.6e-13 Score=118.76 Aligned_cols=164 Identities=19% Similarity=0.194 Sum_probs=108.2
Q ss_pred hcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccch-HHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHh
Q 021374 137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLD-KSLQLIADNYQELESLNLTRCVKLTDGGLQKILI 215 (313)
Q Consensus 137 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 215 (313)
..+++|++|+++++ .+++..... ...+++|++|+++++ .++. ..++.....+++|+.|+++++ .+........+.
T Consensus 321 ~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~~~~ 396 (520)
T 2z7x_B 321 SKISPFLHLDFSNN-LLTDTVFEN-CGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKKGDCS 396 (520)
T ss_dssp SSCCCCCEEECCSS-CCCTTTTTT-CCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGGCSCC
T ss_pred hhCCcccEEEeECC-ccChhhhhh-hccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCC-cCCcccccchhc
Confidence 45688888888887 555432222 246788899999886 4443 234444456888999999884 444310111234
Q ss_pred hCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCC
Q 021374 216 KCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSS 295 (313)
Q Consensus 216 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 295 (313)
.+++|+.|+++++ .++...+..+. ++|++|++++| .++. ....+..+++|++|++++| .++..... .+..+++
T Consensus 397 ~l~~L~~L~Ls~N-~l~~~~~~~l~--~~L~~L~Ls~N-~l~~-ip~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~~ 469 (520)
T 2z7x_B 397 WTKSLLSLNMSSN-ILTDTIFRCLP--PRIKVLDLHSN-KIKS-IPKQVVKLEALQELNVASN-QLKSVPDG-IFDRLTS 469 (520)
T ss_dssp CCTTCCEEECCSS-CCCGGGGGSCC--TTCCEEECCSS-CCCC-CCGGGGGCTTCCEEECCSS-CCCCCCTT-TTTTCTT
T ss_pred cCccCCEEECcCC-CCCcchhhhhc--ccCCEEECCCC-cccc-cchhhhcCCCCCEEECCCC-cCCccCHH-HhccCCc
Confidence 5688899999884 45443322222 68999999998 5652 2233557899999999998 66643222 3456889
Q ss_pred ccEeecCCcccccccc
Q 021374 296 LEFLSSGAEMNCCSCS 311 (313)
Q Consensus 296 L~~L~l~~~~~~~~~~ 311 (313)
|+.|++++|.-.|.|+
T Consensus 470 L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 470 LQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CCEEECCSSCBCCCHH
T ss_pred ccEEECcCCCCcccCC
Confidence 9999999998888775
No 53
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.34 E-value=2.1e-14 Score=130.45 Aligned_cols=184 Identities=16% Similarity=0.159 Sum_probs=112.5
Q ss_pred CCCCCCcEEecCCCCCCChHH-HHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHH
Q 021374 111 GSLQDLESLNLNGCQKISDKG-IEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD 189 (313)
Q Consensus 111 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~ 189 (313)
..+++|+.|+++++ .+.... .......+++|++|+++++ .+... ......+++|++|+++++. +..........
T Consensus 347 ~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~--~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 421 (606)
T 3vq2_A 347 VALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIM--SANFMGLEELQHLDFQHST-LKRVTEFSAFL 421 (606)
T ss_dssp CCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSC-SEEEE--CCCCTTCTTCCEEECTTSE-EESTTTTTTTT
T ss_pred ccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCC-ccccc--hhhccCCCCCCeeECCCCc-cCCccChhhhh
Confidence 45567777777765 222211 1122356777777777776 33221 1222456778888887753 33221111223
Q ss_pred hCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHH-HHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCC
Q 021374 190 NYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDE-AYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCK 268 (313)
Q Consensus 190 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 268 (313)
.+++|+.|+++++ .+... ....+..+++|+.|+++++ .+.+. ....+..+++|++|++++| .++......+.+++
T Consensus 422 ~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~ 497 (606)
T 3vq2_A 422 SLEKLLYLDISYT-NTKID-FDGIFLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLH 497 (606)
T ss_dssp TCTTCCEEECTTS-CCEEC-CTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCT
T ss_pred ccccCCEEECcCC-CCCcc-chhhhcCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhcccc
Confidence 4788888888875 33321 1223466788888888874 33331 2334567889999999988 66655445577889
Q ss_pred CCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374 269 NLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM 305 (313)
Q Consensus 269 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 305 (313)
+|++|++++| .++......+ ..+++|+.|++++|.
T Consensus 498 ~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 498 RLQLLNMSHN-NLLFLDSSHY-NQLYSLSTLDCSFNR 532 (606)
T ss_dssp TCCEEECCSS-CCSCEEGGGT-TTCTTCCEEECTTSC
T ss_pred cCCEEECCCC-cCCCcCHHHc-cCCCcCCEEECCCCc
Confidence 9999999988 6665433333 367889999998874
No 54
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.34 E-value=3e-14 Score=132.68 Aligned_cols=158 Identities=20% Similarity=0.298 Sum_probs=71.0
Q ss_pred ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHH-
Q 021374 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH- 160 (313)
Q Consensus 82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~- 160 (313)
.+++|+.|+++++. +...... ...++.+++|++|+++++. +.......+...+++|++|+++++ .++......
T Consensus 98 ~l~~L~~L~Ls~n~-l~~~~~~---~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~ 171 (768)
T 3rgz_A 98 CSASLTSLDLSRNS-LSGPVTT---LTSLGSCSGLKFLNVSSNT-LDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGW 171 (768)
T ss_dssp CCTTCCEEECCSSE-EEEEGGG---GGGGGGCTTCCEEECCSSE-EECCSSCCSCCCCTTCSEEECCSS-CCEEETHHHH
T ss_pred cCCCCCEEECCCCc-CCCcCCC---hHHHhCCCCCCEEECcCCc-cCCcCCHHHhccCCCCCEEECCCC-ccCCcCChhh
Confidence 34566666666543 2211110 0012345666666666542 111111011134556666666655 333222111
Q ss_pred -HHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHh
Q 021374 161 -LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKI 239 (313)
Q Consensus 161 -~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 239 (313)
....+++|++|+++++. +.... . . ..+++|++|+++++ .+.. .+.. +..+++|++|+++++ .+.......+
T Consensus 172 ~~~~~l~~L~~L~Ls~n~-l~~~~-~-~-~~l~~L~~L~Ls~n-~l~~-~~~~-l~~l~~L~~L~Ls~n-~l~~~~~~~l 243 (768)
T 3rgz_A 172 VLSDGCGELKHLAISGNK-ISGDV-D-V-SRCVNLEFLDVSSN-NFST-GIPF-LGDCSALQHLDISGN-KLSGDFSRAI 243 (768)
T ss_dssp HHTTCCTTCCEEECCSSE-EESCC-B-C-TTCTTCCEEECCSS-CCCS-CCCB-CTTCCSCCEEECCSS-CCCSCHHHHT
T ss_pred hhhccCCCCCEEECCCCc-ccccC-C-c-ccCCcCCEEECcCC-cCCC-CCcc-cccCCCCCEEECcCC-cCCCcccHHH
Confidence 13445666666666542 22100 0 0 23566666666653 2221 0111 345566666666653 3444444555
Q ss_pred hcCCCCCEEecCCC
Q 021374 240 SLLAHLKFLDLCGA 253 (313)
Q Consensus 240 ~~~~~L~~L~l~~~ 253 (313)
..+++|++|++++|
T Consensus 244 ~~l~~L~~L~Ls~n 257 (768)
T 3rgz_A 244 STCTELKLLNISSN 257 (768)
T ss_dssp TTCSSCCEEECCSS
T ss_pred hcCCCCCEEECCCC
Confidence 55666666666655
No 55
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.34 E-value=3.7e-15 Score=124.04 Aligned_cols=205 Identities=13% Similarity=0.112 Sum_probs=93.7
Q ss_pred cccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHH
Q 021374 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (313)
Q Consensus 81 ~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 160 (313)
..+++|+.|+++++..+....... +..+++|++|+++++ .+..... .....+++|++|+++++ .+... +..
T Consensus 73 ~~l~~L~~L~L~~~n~l~~~~p~~-----l~~l~~L~~L~Ls~n-~l~~~~p-~~~~~l~~L~~L~Ls~N-~l~~~-~p~ 143 (313)
T 1ogq_A 73 ANLPYLNFLYIGGINNLVGPIPPA-----IAKLTQLHYLYITHT-NVSGAIP-DFLSQIKTLVTLDFSYN-ALSGT-LPP 143 (313)
T ss_dssp GGCTTCSEEEEEEETTEESCCCGG-----GGGCTTCSEEEEEEE-CCEEECC-GGGGGCTTCCEEECCSS-EEESC-CCG
T ss_pred hCCCCCCeeeCCCCCcccccCChh-----HhcCCCCCEEECcCC-eeCCcCC-HHHhCCCCCCEEeCCCC-ccCCc-CCh
Confidence 356788888887422232211111 345677888888765 3321111 12255677788877776 33321 111
Q ss_pred HHhcCCCCcEEeccCCcccchHHHHHHHHhCC-CCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHh
Q 021374 161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ-ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKI 239 (313)
Q Consensus 161 ~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 239 (313)
....+++|++|+++++ .++......+. .++ +|+.|+++++ .+... ....+..++ |+.|+++++ .+.......+
T Consensus 144 ~~~~l~~L~~L~L~~N-~l~~~~p~~l~-~l~~~L~~L~L~~N-~l~~~-~~~~~~~l~-L~~L~Ls~N-~l~~~~~~~~ 217 (313)
T 1ogq_A 144 SISSLPNLVGITFDGN-RISGAIPDSYG-SFSKLFTSMTISRN-RLTGK-IPPTFANLN-LAFVDLSRN-MLEGDASVLF 217 (313)
T ss_dssp GGGGCTTCCEEECCSS-CCEEECCGGGG-CCCTTCCEEECCSS-EEEEE-CCGGGGGCC-CSEEECCSS-EEEECCGGGC
T ss_pred HHhcCCCCCeEECcCC-cccCcCCHHHh-hhhhcCcEEECcCC-eeecc-CChHHhCCc-ccEEECcCC-cccCcCCHHH
Confidence 2245677777777775 33321111122 244 6777777663 22210 111122333 555555552 2222222333
Q ss_pred hcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCc
Q 021374 240 SLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAE 304 (313)
Q Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 304 (313)
..+++|++|++++| .++... ..+..+++|++|++++| .+++..... +..+++|+.|++++|
T Consensus 218 ~~l~~L~~L~L~~N-~l~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~p~~-l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 218 GSDKNTQKIHLAKN-SLAFDL-GKVGLSKNLNGLDLRNN-RIYGTLPQG-LTQLKFLHSLNVSFN 278 (313)
T ss_dssp CTTSCCSEEECCSS-EECCBG-GGCCCCTTCCEEECCSS-CCEECCCGG-GGGCTTCCEEECCSS
T ss_pred hcCCCCCEEECCCC-ceeeec-CcccccCCCCEEECcCC-cccCcCChH-HhcCcCCCEEECcCC
Confidence 44555555555555 232211 11334455555555554 333221111 123455555555544
No 56
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.33 E-value=3e-11 Score=101.80 Aligned_cols=219 Identities=16% Similarity=0.167 Sum_probs=143.0
Q ss_pred HHHHhhccccCCcCeeeccCCccCc-h---HHHHHHHHHhcCCCCCCcEEecCCCCC----C---ChHHHHHHHhcCCCC
Q 021374 74 LVAALSIPRYRHVREINLEFAQDIE-D---RHLELLKTKCLGSLQDLESLNLNGCQK----I---SDKGIEIISSTCPEL 142 (313)
Q Consensus 74 ~~~~~~~~~~~~l~~L~l~~~~~~~-~---~~~~~l~~~~~~~~~~L~~L~l~~~~~----~---~~~~~~~~~~~~~~L 142 (313)
+..++.......++.|.+.... +. . ..+..+.. ....+++|+.|.+..... + ....+..+...+|+|
T Consensus 97 ~~~fl~~~~~~~v~~L~lg~~~-~~~~~~~~~~~~L~~-s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L 174 (362)
T 2ra8_A 97 MDKILKDKKLPSLKQITIGXWG-YEGEDCSDIADGIVE-NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLL 174 (362)
T ss_dssp HHHHHHCTTGGGCSEEEECCCC-SSSCCSHHHHHHHHT-THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTC
T ss_pred HHHHhcCCCchhcceEEEcccc-cCCCcHHHHHHHHHH-hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCC
Confidence 3334444445667888877432 32 1 12333321 123558999998865311 0 011245666788999
Q ss_pred cEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHH-hCCCCcEEecCCCCC--CCH---HHHHHHH--
Q 021374 143 KVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD-NYQELESLNLTRCVK--LTD---GGLQKIL-- 214 (313)
Q Consensus 143 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~-~~~~L~~L~l~~~~~--~~~---~~~~~~~-- 214 (313)
+.|.+.++..+. +..+ ..++|++|.+..| .++...+..+.. .+|+|++|+|+.+.. ..+ ..+..++
T Consensus 175 ~~L~L~g~~~l~---l~~~--~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~ 248 (362)
T 2ra8_A 175 NNLKIKGTNNLS---IGKK--PRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248 (362)
T ss_dssp CEEEEECCBTCB---CCSC--BCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred cEEEEeCCCCce---eccc--cCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence 999998763222 1111 3789999999986 578888877764 589999999853111 011 1122222
Q ss_pred hhCCCCCEEEeCCCCCCCHHHHHHhh---cCCCCCEEecCCCCCCChHHHHHhh----CCCCCceeeccCCCCCChHHHH
Q 021374 215 IKCSSLRSLNLYALSGFTDEAYKKIS---LLAHLKFLDLCGAQNLSDEGLACIA----KCKNLVSLNLTWCVRITDVGVM 287 (313)
Q Consensus 215 ~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~~~~~~~~ 287 (313)
..+|+|+.|++.+| .+.+.....+. .+|+|++|+|+.| .+++.+...+. ++++|+.|++++| .+++.++.
T Consensus 249 ~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~ 325 (362)
T 2ra8_A 249 DRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKK 325 (362)
T ss_dssp TTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHHHH
T ss_pred CCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCC-cCCHHHHH
Confidence 25799999999885 56555555554 5789999999988 79888766654 4699999999998 79999999
Q ss_pred HHHHhCCCccEeecCCcc
Q 021374 288 AIAEGCSSLEFLSSGAEM 305 (313)
Q Consensus 288 ~l~~~~~~L~~L~l~~~~ 305 (313)
.+.+.+ ..+++++.+.
T Consensus 326 ~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 326 ELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHC--CSEEECCSBC
T ss_pred HHHHHc--CCEEEecCCc
Confidence 988755 4557776543
No 57
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.33 E-value=9.5e-14 Score=113.19 Aligned_cols=183 Identities=20% Similarity=0.221 Sum_probs=124.2
Q ss_pred CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCC
Q 021374 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (313)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~ 193 (313)
++|+.|++.++....... ...+++|++|+++++ .+... . ....+++|++|+++++ .++.... .....+++
T Consensus 41 ~~L~~L~l~~~~i~~~~~----l~~l~~L~~L~l~~n-~l~~~--~-~l~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~ 110 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQG----IQYLPNVRYLALGGN-KLHDI--S-ALKELTNLTYLILTGN-QLQSLPN-GVFDKLTN 110 (272)
T ss_dssp TTCCEEECTTSCCCCCTT----GGGCTTCCEEECTTS-CCCCC--G-GGTTCTTCCEEECTTS-CCCCCCT-TTTTTCTT
T ss_pred cceeeeeeCCCCcccccc----cccCCCCcEEECCCC-CCCCc--h-hhcCCCCCCEEECCCC-ccCccCh-hHhcCCcC
Confidence 789999998863222222 256899999999988 55442 2 2356789999999986 4443211 12234789
Q ss_pred CcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCcee
Q 021374 194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSL 273 (313)
Q Consensus 194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 273 (313)
|+.|+++++ .+... ....+..+++|+.|+++++ .+.......+..+++|++|++++| .++......+.++++|++|
T Consensus 111 L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 186 (272)
T 3rfs_A 111 LKELVLVEN-QLQSL-PDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDL 186 (272)
T ss_dssp CCEEECTTS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCEEECCCC-cCCcc-CHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEE
Confidence 999999885 44431 1122467789999999885 454433344567889999999998 5665433446678999999
Q ss_pred eccCCCCCChHHHHHHHHhCCCccEeecCCccccccccC
Q 021374 274 NLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCSCSH 312 (313)
Q Consensus 274 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 312 (313)
++++| .++.... ..+..+++|+.|++++|...|.|++
T Consensus 187 ~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 187 RLYQN-QLKSVPD-GVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp ECCSS-CCSCCCT-TTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ECCCC-cCCccCH-HHHhCCcCCCEEEccCCCccccCcH
Confidence 99988 5654332 2334688999999999988787765
No 58
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.30 E-value=2.1e-12 Score=116.31 Aligned_cols=167 Identities=25% Similarity=0.272 Sum_probs=93.8
Q ss_pred ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHH
Q 021374 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 161 (313)
Q Consensus 82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 161 (313)
.+++|+.|+++++. +.... . +..+++|+.|+|+++. +..... ...+++|+.|+|+++ .+... ..
T Consensus 41 ~L~~L~~L~l~~n~-i~~l~--~-----l~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N-~l~~l--~~- 104 (605)
T 1m9s_A 41 ELNSIDQIIANNSD-IKSVQ--G-----IQYLPNVTKLFLNGNK-LTDIKP---LTNLKNLGWLFLDEN-KIKDL--SS- 104 (605)
T ss_dssp HHTTCCCCBCTTCC-CCCCT--T-----GGGCTTCCEEECTTSC-CCCCGG---GGGCTTCCEEECCSS-CCCCC--TT-
T ss_pred cCCCCCEEECcCCC-CCCCh--H-----HccCCCCCEEEeeCCC-CCCChh---hccCCCCCEEECcCC-CCCCC--hh-
Confidence 35677777777653 22211 1 3456777777777753 322211 356777777777776 44331 11
Q ss_pred HhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhc
Q 021374 162 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISL 241 (313)
Q Consensus 162 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 241 (313)
+..+++|+.|+++++ .+.+ +..+ ..+++|+.|+++++ .+... ..+..+++|+.|+++++ .+.+... +..
T Consensus 105 l~~l~~L~~L~Ls~N-~l~~--l~~l-~~l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~ 173 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHN-GISD--INGL-VHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDN-QISDIVP--LAG 173 (605)
T ss_dssp STTCTTCCEEECTTS-CCCC--CGGG-GGCTTCSEEECCSS-CCCCC---GGGGSCTTCSEEECCSS-CCCCCGG--GTT
T ss_pred hccCCCCCEEEecCC-CCCC--Cccc-cCCCccCEEECCCC-ccCCc---hhhcccCCCCEEECcCC-cCCCchh--hcc
Confidence 245677777777775 3333 1222 24677777777764 44431 23456677777777664 3333222 566
Q ss_pred CCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCC
Q 021374 242 LAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWC 278 (313)
Q Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 278 (313)
+++|+.|+|++| .+++. ..+..+++|+.|+|++|
T Consensus 174 l~~L~~L~Ls~N-~i~~l--~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 174 LTKLQNLYLSKN-HISDL--RALAGLKNLDVLELFSQ 207 (605)
T ss_dssp CTTCCEEECCSS-CCCBC--GGGTTCTTCSEEECCSE
T ss_pred CCCCCEEECcCC-CCCCC--hHHccCCCCCEEEccCC
Confidence 677777777776 44442 34556677777777766
No 59
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.30 E-value=1.4e-13 Score=115.52 Aligned_cols=200 Identities=17% Similarity=0.176 Sum_probs=133.8
Q ss_pred cCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHH
Q 021374 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV 162 (313)
Q Consensus 83 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 162 (313)
.+.++.|+++++. ++... ...+..+++|++|+++++ .+....... ...+++|++|+++++ .++.. ..
T Consensus 51 ~~~l~~L~L~~n~-i~~~~-----~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~l--~~-- 117 (330)
T 1xku_A 51 PPDTALLDLQNNK-ITEIK-----DGDFKNLKNLHTLILINN-KISKISPGA-FAPLVKLERLYLSKN-QLKEL--PE-- 117 (330)
T ss_dssp CTTCCEEECCSSC-CCCBC-----TTTTTTCTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSS-CCSBC--CS--
T ss_pred CCCCeEEECCCCc-CCEeC-----hhhhccCCCCCEEECCCC-cCCeeCHHH-hcCCCCCCEEECCCC-cCCcc--Ch--
Confidence 3688999999864 33321 112457799999999986 443322212 256899999999988 44421 11
Q ss_pred hcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHH-HHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhc
Q 021374 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGG-LQKILIKCSSLRSLNLYALSGFTDEAYKKISL 241 (313)
Q Consensus 163 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 241 (313)
...++|++|+++++ .++..... ....+++|+.|+++++ .+...+ ....+..+++|+.|+++++ .+... .. ..
T Consensus 118 ~~~~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l-~~--~~ 190 (330)
T 1xku_A 118 KMPKTLQELRVHEN-EITKVRKS-VFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADT-NITTI-PQ--GL 190 (330)
T ss_dssp SCCTTCCEEECCSS-CCCBBCHH-HHTTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSS-CCCSC-CS--SC
T ss_pred hhcccccEEECCCC-cccccCHh-HhcCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCC-ccccC-Cc--cc
Confidence 12378999999986 44443222 3345899999999995 444211 1223577899999999985 33321 00 12
Q ss_pred CCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374 242 LAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM 305 (313)
Q Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 305 (313)
.++|++|++++| .++......+.++++|++|++++| .++......+ ..+++|+.|++++|.
T Consensus 191 ~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 191 PPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSL-ANTPHLRELHLNNNK 251 (330)
T ss_dssp CTTCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTG-GGSTTCCEEECCSSC
T ss_pred cccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCC-cCceeChhhc-cCCCCCCEEECCCCc
Confidence 379999999999 676655556788999999999998 6665433222 367889999888874
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.30 E-value=8.2e-14 Score=116.16 Aligned_cols=173 Identities=15% Similarity=0.078 Sum_probs=91.7
Q ss_pred CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCC
Q 021374 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (313)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~ 193 (313)
++|+.|+++++ .+..... ..+++|++|+++++ .++..... ....+++|++|+++++ .++......+...+++
T Consensus 99 ~~L~~L~l~~n-~l~~~~~----~~~~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~ 170 (317)
T 3o53_A 99 PSIETLHAANN-NISRVSC----SRGQGKKNIYLANN-KITMLRDL-DEGCRSRVQYLDLKLN-EIDTVNFAELAASSDT 170 (317)
T ss_dssp TTCCEEECCSS-CCSEEEE----CCCSSCEEEECCSS-CCCSGGGB-CTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTT
T ss_pred CCcCEEECCCC-ccCCcCc----cccCCCCEEECCCC-CCCCccch-hhhccCCCCEEECCCC-CCCcccHHHHhhccCc
Confidence 55666666554 2222211 23466666666666 44332111 1134567777777764 3443323333334667
Q ss_pred CcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCcee
Q 021374 194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSL 273 (313)
Q Consensus 194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 273 (313)
|+.|+++++ .+... .. ...+++|+.|+++++ .+.... ..+..+++|++|++++| .++.- ...+..+++|++|
T Consensus 171 L~~L~L~~N-~l~~~--~~-~~~l~~L~~L~Ls~N-~l~~l~-~~~~~l~~L~~L~L~~N-~l~~l-~~~~~~l~~L~~L 242 (317)
T 3o53_A 171 LEHLNLQYN-FIYDV--KG-QVVFAKLKTLDLSSN-KLAFMG-PEFQSAAGVTWISLRNN-KLVLI-EKALRFSQNLEHF 242 (317)
T ss_dssp CCEEECTTS-CCCEE--EC-CCCCTTCCEEECCSS-CCCEEC-GGGGGGTTCSEEECTTS-CCCEE-CTTCCCCTTCCEE
T ss_pred CCEEECCCC-cCccc--cc-ccccccCCEEECCCC-cCCcch-hhhcccCcccEEECcCC-cccch-hhHhhcCCCCCEE
Confidence 777777763 44321 11 113567777777763 343221 12556677777777777 44431 2234556777777
Q ss_pred eccCCCCCChHHHHHHHHhCCCccEeecCC
Q 021374 274 NLTWCVRITDVGVMAIAEGCSSLEFLSSGA 303 (313)
Q Consensus 274 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 303 (313)
++++| .++...+..+...+++|+.+++.+
T Consensus 243 ~l~~N-~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 243 DLRGN-GFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp ECTTC-CCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred EccCC-CccCcCHHHHHhccccceEEECCC
Confidence 77777 555444555555667777776663
No 61
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.30 E-value=1.2e-13 Score=113.63 Aligned_cols=182 Identities=18% Similarity=0.154 Sum_probs=93.7
Q ss_pred CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCC
Q 021374 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (313)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~ 193 (313)
++++.|+++++ .++..... ....+++|++|+++++ .++.... ...+++|++|+++++ .++. ++.....+++
T Consensus 31 ~~l~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~Ls~N-~l~~--l~~~~~~l~~ 101 (290)
T 1p9a_G 31 KDTTILHLSEN-LLYTFSLA-TLMPYTRLTQLNLDRA-ELTKLQV---DGTLPVLGTLDLSHN-QLQS--LPLLGQTLPA 101 (290)
T ss_dssp TTCCEEECTTS-CCSEEEGG-GGTTCTTCCEEECTTS-CCCEEEC---CSCCTTCCEEECCSS-CCSS--CCCCTTTCTT
T ss_pred CCCCEEEcCCC-cCCccCHH-HhhcCCCCCEEECCCC-ccCcccC---CCCCCcCCEEECCCC-cCCc--CchhhccCCC
Confidence 45666666664 33322111 1244566666666665 3332111 034566777776664 3332 1112234567
Q ss_pred CcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCcee
Q 021374 194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSL 273 (313)
Q Consensus 194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 273 (313)
|+.|+++++ .+.... ...+..+++|+.|+++++ .+.......+..+++|++|++++| .++......+.++++|++|
T Consensus 102 L~~L~l~~N-~l~~l~-~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L 177 (290)
T 1p9a_G 102 LTVLDVSFN-RLTSLP-LGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTL 177 (290)
T ss_dssp CCEEECCSS-CCCCCC-SSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEE
T ss_pred CCEEECCCC-cCcccC-HHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEE
Confidence 777777663 443210 112355667777777663 343322233455667777777776 4443322234556777777
Q ss_pred eccCCCCCChHHHHHHHHhCCCccEeecCCcccccccc
Q 021374 274 NLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCSCS 311 (313)
Q Consensus 274 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 311 (313)
++++| .++... .-....++|+.|++++|.-.|.|.
T Consensus 178 ~L~~N-~l~~ip--~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 178 LLQEN-SLYTIP--KGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp ECCSS-CCCCCC--TTTTTTCCCSEEECCSCCBCCSGG
T ss_pred ECCCC-cCCccC--hhhcccccCCeEEeCCCCccCcCc
Confidence 77776 444211 111134567777777776666663
No 62
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.30 E-value=1.6e-12 Score=100.64 Aligned_cols=151 Identities=17% Similarity=0.163 Sum_probs=88.9
Q ss_pred CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCC
Q 021374 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (313)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~ 193 (313)
++|+.|+++++ .+.... . ...+++|++|+++++ .+... . ....+++|++|+++++ .+++.....+ ..+++
T Consensus 44 ~~L~~L~l~~n-~i~~l~--~-l~~l~~L~~L~l~~n-~~~~~--~-~l~~l~~L~~L~l~~n-~l~~~~~~~l-~~l~~ 113 (197)
T 4ezg_A 44 NSLTYITLANI-NVTDLT--G-IEYAHNIKDLTINNI-HATNY--N-PISGLSNLERLRIMGK-DVTSDKIPNL-SGLTS 113 (197)
T ss_dssp HTCCEEEEESS-CCSCCT--T-GGGCTTCSEEEEESC-CCSCC--G-GGTTCTTCCEEEEECT-TCBGGGSCCC-TTCTT
T ss_pred CCccEEeccCC-CccChH--H-HhcCCCCCEEEccCC-CCCcc--h-hhhcCCCCCEEEeECC-ccCcccChhh-cCCCC
Confidence 45566666554 222211 1 245667777777666 43322 1 1234677777777764 3443222222 23678
Q ss_pred CcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCcee
Q 021374 194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSL 273 (313)
Q Consensus 194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 273 (313)
|+.|+++++ .+.+.... .+..+++|+.|+++++..+.+. ..+..+++|++|++++| .+++. ..+.++++|++|
T Consensus 114 L~~L~Ls~n-~i~~~~~~-~l~~l~~L~~L~L~~n~~i~~~--~~l~~l~~L~~L~l~~n-~i~~~--~~l~~l~~L~~L 186 (197)
T 4ezg_A 114 LTLLDISHS-AHDDSILT-KINTLPKVNSIDLSYNGAITDI--MPLKTLPELKSLNIQFD-GVHDY--RGIEDFPKLNQL 186 (197)
T ss_dssp CCEEECCSS-BCBGGGHH-HHTTCSSCCEEECCSCTBCCCC--GGGGGCSSCCEEECTTB-CCCCC--TTGGGCSSCCEE
T ss_pred CCEEEecCC-ccCcHhHH-HHhhCCCCCEEEccCCCCcccc--HhhcCCCCCCEEECCCC-CCcCh--HHhccCCCCCEE
Confidence 888888774 55543332 3467788888888875434442 25677888888888888 55553 256778889999
Q ss_pred eccCCCCCC
Q 021374 274 NLTWCVRIT 282 (313)
Q Consensus 274 ~l~~~~~~~ 282 (313)
+++++ .++
T Consensus 187 ~l~~N-~i~ 194 (197)
T 4ezg_A 187 YAFSQ-TIG 194 (197)
T ss_dssp EECBC----
T ss_pred EeeCc-ccC
Confidence 99887 443
No 63
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.29 E-value=1.3e-13 Score=114.64 Aligned_cols=206 Identities=17% Similarity=0.127 Sum_probs=132.7
Q ss_pred CCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHH-hcCCCCcEEEecCCcccCHH----HH
Q 021374 84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS-STCPELKVFSIYWNVRVTDI----GI 158 (313)
Q Consensus 84 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~----~~ 158 (313)
..++.+.+... .+++..+..+.... ..++|++|+++++. +.......+. ..+++|++|+++++ .++.. ..
T Consensus 64 ~~l~~l~l~~~-~~~~~~~~~~~~~~--~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~ 138 (310)
T 4glp_A 64 LRVRRLTVGAA-QVPAQLLVGALRVL--AYSRLKELTLEDLK-ITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAE 138 (310)
T ss_dssp CCCCEEEECSC-CCBHHHHHHHHHHH--HHSCCCEEEEESCC-CBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHH
T ss_pred cceeEEEEeCC-cCCHHHHHHHHHhc--ccCceeEEEeeCCE-eccchhhhhhhccCCCCCEEEeecc-cccchhhhhHH
Confidence 45778888775 45555555443322 23679999999873 3322221221 45789999999988 55532 11
Q ss_pred HHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCH-HHHHH--HHhhCCCCCEEEeCCCCCCCH--
Q 021374 159 QHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTD-GGLQK--ILIKCSSLRSLNLYALSGFTD-- 233 (313)
Q Consensus 159 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~~~~--~~~~~~~L~~L~l~~~~~~~~-- 233 (313)
..+ ..+++|++|+++++ .++..... ....+++|++|+++++ .+.. .++.. ....+++|++|+++++ .++.
T Consensus 139 ~~~-~~~~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~ 213 (310)
T 4glp_A 139 LQQ-WLKPGLKVLSIAQA-HSPAFSCE-QVRAFPALTSLDLSDN-PGLGERGLMAALCPHKFPAIQNLALRNT-GMETPT 213 (310)
T ss_dssp HHT-TBCSCCCEEEEECC-SSCCCCTT-SCCCCTTCCEEECCSC-TTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHH
T ss_pred HHh-hhccCCCEEEeeCC-CcchhhHH-HhccCCCCCEEECCCC-CCccchhhhHHHhhhcCCCCCEEECCCC-CCCchH
Confidence 222 36899999999996 34332211 2234799999999995 4443 22321 1256789999999995 5542
Q ss_pred HHHH-HhhcCCCCCEEecCCCCCCChHHHHHhhCC---CCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374 234 EAYK-KISLLAHLKFLDLCGAQNLSDEGLACIAKC---KNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM 305 (313)
Q Consensus 234 ~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 305 (313)
.... .+..+++|++|++++| .+++.....+..+ ++|++|++++| .++... ..+ .++|+.|++++|.
T Consensus 214 ~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp-~~~---~~~L~~L~Ls~N~ 283 (310)
T 4glp_A 214 GVCAALAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVP-KGL---PAKLRVLDLSSNR 283 (310)
T ss_dssp HHHHHHHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCC-SCC---CSCCSCEECCSCC
T ss_pred HHHHHHHhcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCC-CCCchh-hhh---cCCCCEEECCCCc
Confidence 2222 2467899999999999 5665433334444 79999999998 666321 111 3799999999884
No 64
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.29 E-value=8.2e-14 Score=119.60 Aligned_cols=85 Identities=18% Similarity=0.192 Sum_probs=46.4
Q ss_pred ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHH
Q 021374 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 161 (313)
Q Consensus 82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 161 (313)
.+++|+.|+++++. ++.. ....+..+++|+.|+++++ .+.... ..+...+++|++|+++++ .+..... ..
T Consensus 91 ~l~~L~~L~L~~n~-l~~~-----~~~~~~~l~~L~~L~L~~n-~l~~l~-~~~~~~l~~L~~L~L~~n-~l~~~~~-~~ 160 (390)
T 3o6n_A 91 YAHTIQKLYMGFNA-IRYL-----PPHVFQNVPLLTVLVLERN-DLSSLP-RGIFHNTPKLTTLSMSNN-NLERIED-DT 160 (390)
T ss_dssp TCTTCCEEECCSSC-CCCC-----CTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCBCCT-TT
T ss_pred CCCCcCEEECCCCC-CCcC-----CHHHhcCCCCCCEEECCCC-ccCcCC-HHHhcCCCCCcEEECCCC-ccCccCh-hh
Confidence 45667777776653 2221 1111345677777777775 333211 112245677888888776 4432211 11
Q ss_pred HhcCCCCcEEeccCC
Q 021374 162 VKNCKHIIDLNLSGC 176 (313)
Q Consensus 162 ~~~~~~L~~L~l~~~ 176 (313)
...+++|++|+++++
T Consensus 161 ~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 161 FQATTSLQNLQLSSN 175 (390)
T ss_dssp TSSCTTCCEEECCSS
T ss_pred ccCCCCCCEEECCCC
Confidence 245678888888775
No 65
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.29 E-value=8.3e-14 Score=129.72 Aligned_cols=110 Identities=22% Similarity=0.227 Sum_probs=61.5
Q ss_pred CCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCC
Q 021374 191 YQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNL 270 (313)
Q Consensus 191 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 270 (313)
+++|+.|+++++ .+... +...+..+++|+.|+++++ .+.......+..+++|++|++++| .++......+.++++|
T Consensus 441 l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L 516 (768)
T 3rgz_A 441 LSKLRDLKLWLN-MLEGE-IPQELMYVKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSNN-RLTGEIPKWIGRLENL 516 (768)
T ss_dssp CTTCCEEECCSS-CCCSC-CCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTC
T ss_pred CCCCCEEECCCC-cccCc-CCHHHcCCCCceEEEecCC-cccCcCCHHHhcCCCCCEEEccCC-ccCCcCChHHhcCCCC
Confidence 455555655553 22211 1122345566666666663 343333444566777777777777 4544444456667777
Q ss_pred ceeeccCCCCCChHHHHHHHHhCCCccEeecCCccc
Q 021374 271 VSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMN 306 (313)
Q Consensus 271 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 306 (313)
++|++++| .++...... +..+++|+.|++++|.-
T Consensus 517 ~~L~L~~N-~l~~~~p~~-l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 517 AILKLSNN-SFSGNIPAE-LGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp CEEECCSS-CCEEECCGG-GGGCTTCCEEECCSSEE
T ss_pred CEEECCCC-cccCcCCHH-HcCCCCCCEEECCCCcc
Confidence 77777777 444332222 23577788888877753
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.29 E-value=1.3e-13 Score=114.78 Aligned_cols=182 Identities=19% Similarity=0.231 Sum_probs=118.2
Q ss_pred CCCCCcEEecCCCCCCChHHHHHH-HhcCCCCcEEEecCCcccCHH--HHHHHHh-cCCCCcEEeccCCcccchHHHHHH
Q 021374 112 SLQDLESLNLNGCQKISDKGIEII-SSTCPELKVFSIYWNVRVTDI--GIQHLVK-NCKHIIDLNLSGCKNLLDKSLQLI 187 (313)
Q Consensus 112 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~--~~~~~~~-~~~~L~~L~l~~~~~~~~~~l~~l 187 (313)
.+++|++|+++++ .++......+ ...+++|++|+++++ .++.. .+..+.. ..++|++|+++++ .++......+
T Consensus 93 ~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~ 169 (312)
T 1wwl_A 93 GISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQV 169 (312)
T ss_dssp TTSCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTC
T ss_pred CcCCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHh
Confidence 5689999999986 3332211111 256799999999988 55543 2222211 1389999999986 4443222222
Q ss_pred HHhCCCCcEEecCCCCCCCH-HHHHHHH--hhCCCCCEEEeCCCCCCC---HHHHHHhhcCCCCCEEecCCCCCCChHH-
Q 021374 188 ADNYQELESLNLTRCVKLTD-GGLQKIL--IKCSSLRSLNLYALSGFT---DEAYKKISLLAHLKFLDLCGAQNLSDEG- 260 (313)
Q Consensus 188 ~~~~~~L~~L~l~~~~~~~~-~~~~~~~--~~~~~L~~L~l~~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~~- 260 (313)
..+++|+.|+++++ .+.. .++.... ..+++|+.|+++++ .+. ......+..+++|++|++++| .++...
T Consensus 170 -~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~ 245 (312)
T 1wwl_A 170 -RVFPALSTLDLSDN-PELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAG 245 (312)
T ss_dssp -CCCSSCCEEECCSC-TTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCC
T ss_pred -ccCCCCCEEECCCC-CcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccc
Confidence 34789999999995 4443 2232222 67899999999985 555 222233457899999999999 565532
Q ss_pred HHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374 261 LACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM 305 (313)
Q Consensus 261 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 305 (313)
...+..+++|++|++++| .++... ..+ .++|+.|++++|.
T Consensus 246 ~~~~~~l~~L~~L~Ls~N-~l~~ip-~~~---~~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 246 APSCDWPSQLNSLNLSFT-GLKQVP-KGL---PAKLSVLDLSYNR 285 (312)
T ss_dssp CSCCCCCTTCCEEECTTS-CCSSCC-SSC---CSEEEEEECCSSC
T ss_pred hhhhhhcCCCCEEECCCC-ccChhh-hhc---cCCceEEECCCCC
Confidence 122345789999999998 666211 111 1689999999885
No 67
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.29 E-value=5.3e-14 Score=127.39 Aligned_cols=85 Identities=18% Similarity=0.192 Sum_probs=45.3
Q ss_pred ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHH
Q 021374 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 161 (313)
Q Consensus 82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 161 (313)
.+++|+.|+++++. ++.. ....++.+++|+.|+++++ .++... ..++..+++|++|+++++ .+..... ..
T Consensus 97 ~l~~L~~L~L~~n~-l~~~-----~~~~~~~l~~L~~L~L~~n-~l~~l~-~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~ 166 (597)
T 3oja_B 97 YAHTIQKLYMGFNA-IRYL-----PPHVFQNVPLLTVLVLERN-DLSSLP-RGIFHNTPKLTTLSMSNN-NLERIED-DT 166 (597)
T ss_dssp TCTTCCEEECCSSC-CCCC-----CTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCBCCT-TT
T ss_pred CCCCCCEEECCCCc-CCCC-----CHHHHcCCCCCCEEEeeCC-CCCCCC-HHHhccCCCCCEEEeeCC-cCCCCCh-hh
Confidence 45666777776643 2221 1111345677777777765 333211 112245677777777776 4433211 11
Q ss_pred HhcCCCCcEEeccCC
Q 021374 162 VKNCKHIIDLNLSGC 176 (313)
Q Consensus 162 ~~~~~~L~~L~l~~~ 176 (313)
+..+++|++|+++++
T Consensus 167 ~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 167 FQATTSLQNLQLSSN 181 (597)
T ss_dssp TTTCTTCCEEECTTS
T ss_pred hhcCCcCcEEECcCC
Confidence 245677888888775
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.28 E-value=1.1e-13 Score=122.10 Aligned_cols=59 Identities=10% Similarity=0.013 Sum_probs=24.9
Q ss_pred hcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeec
Q 021374 240 SLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSS 301 (313)
Q Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l 301 (313)
..+++|+.|++++| .++. ....+..+++|+.|++++| .++...+......++.|+.+++
T Consensus 211 ~~l~~L~~L~Ls~N-~l~~-lp~~l~~l~~L~~L~l~~N-~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 211 QSAAGVTWISLRNN-KLVL-IEKALRFSQNLEHFDLRGN-GFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp GGGTTCSEEECTTS-CCCE-ECTTCCCCTTCCEEECTTC-CBCHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCCccEEEecCC-cCcc-cchhhccCCCCCEEEcCCC-CCcCcchHHHHHhCCCCcEEec
Confidence 34445555555554 2332 1111333445555555554 3433333333334444444444
No 69
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.28 E-value=4.5e-15 Score=123.51 Aligned_cols=208 Identities=14% Similarity=0.137 Sum_probs=137.1
Q ss_pred cccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHH
Q 021374 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (313)
Q Consensus 81 ~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 160 (313)
..+++|+.|+++++. +...... .+..+++|++|+++++ .+.... ......+++|++|+++++ .++......
T Consensus 98 ~~l~~L~~L~Ls~n~-l~~~~p~-----~~~~l~~L~~L~Ls~N-~l~~~~-p~~~~~l~~L~~L~L~~N-~l~~~~p~~ 168 (313)
T 1ogq_A 98 AKLTQLHYLYITHTN-VSGAIPD-----FLSQIKTLVTLDFSYN-ALSGTL-PPSISSLPNLVGITFDGN-RISGAIPDS 168 (313)
T ss_dssp GGCTTCSEEEEEEEC-CEEECCG-----GGGGCTTCCEEECCSS-EEESCC-CGGGGGCTTCCEEECCSS-CCEEECCGG
T ss_pred hcCCCCCEEECcCCe-eCCcCCH-----HHhCCCCCCEEeCCCC-ccCCcC-ChHHhcCCCCCeEECcCC-cccCcCCHH
Confidence 357899999998764 3321111 1356799999999986 332111 112367899999999988 544222222
Q ss_pred HHhcCC-CCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHh
Q 021374 161 LVKNCK-HIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKI 239 (313)
Q Consensus 161 ~~~~~~-~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 239 (313)
...++ +|++|+++++ .++......+ ..++ |+.|+++++ .+... ....+..+++|+.|+++++ .+... ...+
T Consensus 169 -l~~l~~~L~~L~L~~N-~l~~~~~~~~-~~l~-L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~ 240 (313)
T 1ogq_A 169 -YGSFSKLFTSMTISRN-RLTGKIPPTF-ANLN-LAFVDLSRN-MLEGD-ASVLFGSDKNTQKIHLAKN-SLAFD-LGKV 240 (313)
T ss_dssp -GGCCCTTCCEEECCSS-EEEEECCGGG-GGCC-CSEEECCSS-EEEEC-CGGGCCTTSCCSEEECCSS-EECCB-GGGC
T ss_pred -HhhhhhcCcEEECcCC-eeeccCChHH-hCCc-ccEEECcCC-cccCc-CCHHHhcCCCCCEEECCCC-ceeee-cCcc
Confidence 23455 9999999986 3432212222 2344 999999995 44321 2233567899999999985 34322 2225
Q ss_pred hcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcccccc
Q 021374 240 SLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCS 309 (313)
Q Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 309 (313)
..+++|++|++++| .++......+.++++|++|++++| .+++.... . ..+++|+.+++.+|..-|.
T Consensus 241 ~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~ip~-~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 241 GLSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFN-NLCGEIPQ-G-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCSS-EEEEECCC-S-TTGGGSCGGGTCSSSEEES
T ss_pred cccCCCCEEECcCC-cccCcCChHHhcCcCCCEEECcCC-cccccCCC-C-ccccccChHHhcCCCCccC
Confidence 67899999999999 666555556788999999999998 55533221 1 4578999999999874443
No 70
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.27 E-value=1.1e-11 Score=111.25 Aligned_cols=179 Identities=16% Similarity=0.196 Sum_probs=100.9
Q ss_pred CCCCcEEecCCCCCCChHHHHH--HHhcCCCCcEEEecCCcccCHHH-HHHHHhcCCCCcEEeccCCcccchHHHHHHHH
Q 021374 113 LQDLESLNLNGCQKISDKGIEI--ISSTCPELKVFSIYWNVRVTDIG-IQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD 189 (313)
Q Consensus 113 ~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~ 189 (313)
+++|+.|+++++ .+....... ....+++|++|+++++ .++... .......+++|++|+++++ .++. ++....
T Consensus 333 l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~--lp~~~~ 407 (549)
T 2z81_A 333 LKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHP--MPDSCQ 407 (549)
T ss_dssp CTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCC--CCSCCC
T ss_pred CccccEEEccCC-ccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCcc--CChhhc
Confidence 366666666664 333322211 1234566666666666 443321 1123345666666666664 3331 111112
Q ss_pred hCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCC
Q 021374 190 NYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKN 269 (313)
Q Consensus 190 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 269 (313)
.+++|+.|+++++ .+.. +.. ...++|+.|+++++ .++.. ...+++|++|++++| .++. +.....+++
T Consensus 408 ~~~~L~~L~Ls~N-~l~~--l~~--~~~~~L~~L~Ls~N-~l~~~----~~~l~~L~~L~Ls~N-~l~~--ip~~~~l~~ 474 (549)
T 2z81_A 408 WPEKMRFLNLSST-GIRV--VKT--CIPQTLEVLDVSNN-NLDSF----SLFLPRLQELYISRN-KLKT--LPDASLFPV 474 (549)
T ss_dssp CCTTCCEEECTTS-CCSC--CCT--TSCTTCSEEECCSS-CCSCC----CCCCTTCCEEECCSS-CCSS--CCCGGGCTT
T ss_pred ccccccEEECCCC-Cccc--ccc--hhcCCceEEECCCC-Chhhh----cccCChhcEEECCCC-ccCc--CCCcccCcc
Confidence 3456666666663 3321 000 01246777777664 33321 246889999999998 5552 222456889
Q ss_pred CceeeccCCCCCChHHHHHHHHhCCCccEeecCCcccccccc
Q 021374 270 LVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCSCS 311 (313)
Q Consensus 270 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 311 (313)
|++|++++| .++..... .+..+++|+.|++++|.--|.|+
T Consensus 475 L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 475 LLVMKISRN-QLKSVPDG-IFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCEEECCSS-CCCCCCTT-GGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCEEecCCC-ccCCcCHH-HHhcCcccCEEEecCCCccCCCc
Confidence 999999988 66653322 23468899999999998777775
No 71
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.25 E-value=1.3e-13 Score=124.77 Aligned_cols=65 Identities=14% Similarity=0.165 Sum_probs=39.4
Q ss_pred cccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccC
Q 021374 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVT 154 (313)
Q Consensus 81 ~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 154 (313)
..+++|+.|+++++. ++. +....+..+++|+.|+++++ .+...... ....+++|++|+++++ .++
T Consensus 120 ~~l~~L~~L~L~~n~-l~~-----l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~ 184 (597)
T 3oja_B 120 QNVPLLTVLVLERND-LSS-----LPRGIFHNTPKLTTLSMSNN-NLERIEDD-TFQATTSLQNLQLSSN-RLT 184 (597)
T ss_dssp TTCTTCCEEECCSSC-CCC-----CCTTTTTTCTTCCEEECCSS-CCCBCCTT-TTTTCTTCCEEECTTS-CCS
T ss_pred cCCCCCCEEEeeCCC-CCC-----CCHHHhccCCCCCEEEeeCC-cCCCCChh-hhhcCCcCcEEECcCC-CCC
Confidence 356788888888763 331 11111356688888888876 33332211 1256788888888877 444
No 72
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.25 E-value=3.6e-12 Score=111.44 Aligned_cols=201 Identities=14% Similarity=0.140 Sum_probs=142.8
Q ss_pred ceeecccccccchhhHHHHhhccccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhc
Q 021374 59 WLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST 138 (313)
Q Consensus 59 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 138 (313)
.+.+++.+...... . ....+++|+.|+++++. ++... +..+++|+.|+++++ .++... ...
T Consensus 44 L~~L~Ls~n~l~~~---~--~l~~l~~L~~L~Ls~n~-l~~~~--------~~~l~~L~~L~Ls~N-~l~~~~----~~~ 104 (457)
T 3bz5_A 44 LTSLDCHNSSITDM---T--GIEKLTGLTKLICTSNN-ITTLD--------LSQNTNLTYLACDSN-KLTNLD----VTP 104 (457)
T ss_dssp CCEEECCSSCCCCC---T--TGGGCTTCSEEECCSSC-CSCCC--------CTTCTTCSEEECCSS-CCSCCC----CTT
T ss_pred CCEEEccCCCcccC---h--hhcccCCCCEEEccCCc-CCeEc--------cccCCCCCEEECcCC-CCceee----cCC
Confidence 36677765443321 1 24467899999999864 44321 457789999999986 444432 367
Q ss_pred CCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCC
Q 021374 139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCS 218 (313)
Q Consensus 139 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 218 (313)
+++|++|+++++ .++... ...+++|++|+++++ .++... ...+++|+.|+++++..+... -+..++
T Consensus 105 l~~L~~L~L~~N-~l~~l~----~~~l~~L~~L~l~~N-~l~~l~----l~~l~~L~~L~l~~n~~~~~~----~~~~l~ 170 (457)
T 3bz5_A 105 LTKLTYLNCDTN-KLTKLD----VSQNPLLTYLNCARN-TLTEID----VSHNTQLTELDCHLNKKITKL----DVTPQT 170 (457)
T ss_dssp CTTCCEEECCSS-CCSCCC----CTTCTTCCEEECTTS-CCSCCC----CTTCTTCCEEECTTCSCCCCC----CCTTCT
T ss_pred CCcCCEEECCCC-cCCeec----CCCCCcCCEEECCCC-ccceec----cccCCcCCEEECCCCCccccc----ccccCC
Confidence 899999999988 555431 356889999999986 454421 235789999999986444432 145679
Q ss_pred CCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccE
Q 021374 219 SLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEF 298 (313)
Q Consensus 219 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 298 (313)
+|+.|+++++ .++... +..+++|++|++++| .++.. .+..+++|++|++++| .++... ...+++|+.
T Consensus 171 ~L~~L~ls~n-~l~~l~---l~~l~~L~~L~l~~N-~l~~~---~l~~l~~L~~L~Ls~N-~l~~ip----~~~l~~L~~ 237 (457)
T 3bz5_A 171 QLTTLDCSFN-KITELD---VSQNKLLNRLNCDTN-NITKL---DLNQNIQLTFLDCSSN-KLTEID----VTPLTQLTY 237 (457)
T ss_dssp TCCEEECCSS-CCCCCC---CTTCTTCCEEECCSS-CCSCC---CCTTCTTCSEEECCSS-CCSCCC----CTTCTTCSE
T ss_pred cCCEEECCCC-ccceec---cccCCCCCEEECcCC-cCCee---ccccCCCCCEEECcCC-cccccC----ccccCCCCE
Confidence 9999999985 444421 678899999999998 56553 3778999999999998 676632 447899999
Q ss_pred eecCCcc
Q 021374 299 LSSGAEM 305 (313)
Q Consensus 299 L~l~~~~ 305 (313)
|++++|.
T Consensus 238 L~l~~N~ 244 (457)
T 3bz5_A 238 FDCSVNP 244 (457)
T ss_dssp EECCSSC
T ss_pred EEeeCCc
Confidence 9999875
No 73
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.25 E-value=6.7e-13 Score=110.62 Aligned_cols=197 Identities=16% Similarity=0.161 Sum_probs=116.8
Q ss_pred ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHH
Q 021374 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 161 (313)
Q Consensus 82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 161 (313)
.+++|+.|+++++. +..... +..+++|+.|+++++ .++.. ...++|++|+++++ .++...
T Consensus 56 ~l~~L~~L~Ls~n~-l~~~~~-------~~~l~~L~~L~Ls~n-~l~~l------~~~~~L~~L~l~~n-~l~~~~---- 115 (317)
T 3o53_A 56 PFTKLELLNLSSNV-LYETLD-------LESLSTLRTLDLNNN-YVQEL------LVGPSIETLHAANN-NISRVS---- 115 (317)
T ss_dssp TCTTCCEEECTTSC-CEEEEE-------ETTCTTCCEEECCSS-EEEEE------EECTTCCEEECCSS-CCSEEE----
T ss_pred CCCcCCEEECCCCc-CCcchh-------hhhcCCCCEEECcCC-ccccc------cCCCCcCEEECCCC-ccCCcC----
Confidence 44566666666543 221110 234566666666654 22211 12366666666665 443321
Q ss_pred HhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhc
Q 021374 162 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISL 241 (313)
Q Consensus 162 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 241 (313)
...+++|++|+++++ .++......+ ..+++|+.|+++++ .+.......+...+++|+.|+++++ .++.. .....
T Consensus 116 ~~~~~~L~~L~l~~N-~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~--~~~~~ 189 (317)
T 3o53_A 116 CSRGQGKKNIYLANN-KITMLRDLDE-GCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN-FIYDV--KGQVV 189 (317)
T ss_dssp ECCCSSCEEEECCSS-CCCSGGGBCT-GGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS-CCCEE--ECCCC
T ss_pred ccccCCCCEEECCCC-CCCCccchhh-hccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCC-cCccc--ccccc
Confidence 123567888888875 3433211112 34688889998884 5554333334456788999999884 44332 22235
Q ss_pred CCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcccccc
Q 021374 242 LAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCS 309 (313)
Q Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 309 (313)
+++|++|++++| .++... ..+..+++|++|++++| .++.. ...+..+++|+.|++++|.-.|.
T Consensus 190 l~~L~~L~Ls~N-~l~~l~-~~~~~l~~L~~L~L~~N-~l~~l--~~~~~~l~~L~~L~l~~N~~~~~ 252 (317)
T 3o53_A 190 FAKLKTLDLSSN-KLAFMG-PEFQSAAGVTWISLRNN-KLVLI--EKALRFSQNLEHFDLRGNGFHCG 252 (317)
T ss_dssp CTTCCEEECCSS-CCCEEC-GGGGGGTTCSEEECTTS-CCCEE--CTTCCCCTTCCEEECTTCCCBHH
T ss_pred cccCCEEECCCC-cCCcch-hhhcccCcccEEECcCC-cccch--hhHhhcCCCCCEEEccCCCccCc
Confidence 789999999998 565432 23667899999999998 66642 12234678999999999875543
No 74
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.23 E-value=1.2e-11 Score=108.17 Aligned_cols=197 Identities=18% Similarity=0.207 Sum_probs=136.3
Q ss_pred ceeecccccccchhhHHHHhhccccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhc
Q 021374 59 WLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST 138 (313)
Q Consensus 59 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 138 (313)
.+.+++....... +....+++|+.|+++++. ++... +..+++|+.|+++++ .++... ...
T Consensus 66 L~~L~Ls~n~l~~------~~~~~l~~L~~L~Ls~N~-l~~~~--------~~~l~~L~~L~L~~N-~l~~l~----~~~ 125 (457)
T 3bz5_A 66 LTKLICTSNNITT------LDLSQNTNLTYLACDSNK-LTNLD--------VTPLTKLTYLNCDTN-KLTKLD----VSQ 125 (457)
T ss_dssp CSEEECCSSCCSC------CCCTTCTTCSEEECCSSC-CSCCC--------CTTCTTCCEEECCSS-CCSCCC----CTT
T ss_pred CCEEEccCCcCCe------EccccCCCCCEEECcCCC-Cceee--------cCCCCcCCEEECCCC-cCCeec----CCC
Confidence 3566666544222 124567899999999864 44321 457799999999986 444322 367
Q ss_pred CCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCC
Q 021374 139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCS 218 (313)
Q Consensus 139 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 218 (313)
+++|++|+++++ .++... ...+++|++|+++++..++... ...+++|+.|+++++ .+.. +. +..++
T Consensus 126 l~~L~~L~l~~N-~l~~l~----l~~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n-~l~~--l~--l~~l~ 191 (457)
T 3bz5_A 126 NPLLTYLNCARN-TLTEID----VSHNTQLTELDCHLNKKITKLD----VTPQTQLTTLDCSFN-KITE--LD--VSQNK 191 (457)
T ss_dssp CTTCCEEECTTS-CCSCCC----CTTCTTCCEEECTTCSCCCCCC----CTTCTTCCEEECCSS-CCCC--CC--CTTCT
T ss_pred CCcCCEEECCCC-ccceec----cccCCcCCEEECCCCCcccccc----cccCCcCCEEECCCC-ccce--ec--cccCC
Confidence 899999999988 555431 3568899999999875554431 234789999999984 5554 22 56789
Q ss_pred CCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccE
Q 021374 219 SLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEF 298 (313)
Q Consensus 219 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 298 (313)
+|+.|+++++ .++.. .++.+++|++|++++| .++.. . +..+++|++|++++| .++... ...+++|+.
T Consensus 192 ~L~~L~l~~N-~l~~~---~l~~l~~L~~L~Ls~N-~l~~i--p-~~~l~~L~~L~l~~N-~l~~~~----~~~l~~L~~ 258 (457)
T 3bz5_A 192 LLNRLNCDTN-NITKL---DLNQNIQLTFLDCSSN-KLTEI--D-VTPLTQLTYFDCSVN-PLTELD----VSTLSKLTT 258 (457)
T ss_dssp TCCEEECCSS-CCSCC---CCTTCTTCSEEECCSS-CCSCC--C-CTTCTTCSEEECCSS-CCSCCC----CTTCTTCCE
T ss_pred CCCEEECcCC-cCCee---ccccCCCCCEEECcCC-ccccc--C-ccccCCCCEEEeeCC-cCCCcC----HHHCCCCCE
Confidence 9999999884 44432 3678899999999999 56652 2 778999999999998 666543 234565555
Q ss_pred eecC
Q 021374 299 LSSG 302 (313)
Q Consensus 299 L~l~ 302 (313)
|+++
T Consensus 259 L~l~ 262 (457)
T 3bz5_A 259 LHCI 262 (457)
T ss_dssp EECT
T ss_pred Eecc
Confidence 4443
No 75
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.23 E-value=5.1e-13 Score=107.49 Aligned_cols=158 Identities=16% Similarity=0.193 Sum_probs=101.8
Q ss_pred CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCC
Q 021374 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (313)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~ 193 (313)
++++.|+++++ .+...... ....+++|++|+++++ .+..... .....+++|++|+++++ .++.... .....+++
T Consensus 35 ~~l~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~ 108 (251)
T 3m19_A 35 ADTEKLDLQST-GLATLSDA-TFRGLTKLTWLNLDYN-QLQTLSA-GVFDDLTELGTLGLANN-QLASLPL-GVFDHLTQ 108 (251)
T ss_dssp TTCCEEECTTS-CCCCCCTT-TTTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTTS-CCCCCCT-TTTTTCTT
T ss_pred CCCCEEEccCC-CcCccCHh-HhcCcccCCEEECCCC-cCCccCH-hHhccCCcCCEEECCCC-cccccCh-hHhcccCC
Confidence 67899999886 33332211 2256789999999987 5543211 22345788999999885 4443211 12234788
Q ss_pred CcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCcee
Q 021374 194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSL 273 (313)
Q Consensus 194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 273 (313)
|+.|+++++ .+.... ...+..+++|+.|+++++ .+.......+..+++|++|++++| .++......+.++++|++|
T Consensus 109 L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 184 (251)
T 3m19_A 109 LDKLYLGGN-QLKSLP-SGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTI 184 (251)
T ss_dssp CCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred CCEEEcCCC-cCCCcC-hhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEE
Confidence 999999884 554311 122456788999999874 554433345667888999999888 5554433346678889999
Q ss_pred eccCCCCCC
Q 021374 274 NLTWCVRIT 282 (313)
Q Consensus 274 ~l~~~~~~~ 282 (313)
++++| .++
T Consensus 185 ~l~~N-~~~ 192 (251)
T 3m19_A 185 TLFGN-QFD 192 (251)
T ss_dssp ECCSC-CBC
T ss_pred EeeCC-cee
Confidence 99887 443
No 76
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.22 E-value=1.1e-12 Score=112.64 Aligned_cols=200 Identities=20% Similarity=0.177 Sum_probs=113.6
Q ss_pred ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHH
Q 021374 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 161 (313)
Q Consensus 82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 161 (313)
.+++|+.|+++++. +..... ..+..+++|+.|+++++ .+..... .....+++|++|+++++ .++.. ...+
T Consensus 67 ~l~~L~~L~L~~n~-i~~~~~-----~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~l-~~~~ 136 (390)
T 3o6n_A 67 SFRQVELLNLNDLQ-IEEIDT-----YAFAYAHTIQKLYMGFN-AIRYLPP-HVFQNVPLLTVLVLERN-DLSSL-PRGI 136 (390)
T ss_dssp HCCCCSEEECTTSC-CCEECT-----TTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCC-CTTT
T ss_pred ccccCcEEECCCCc-ccccCh-----hhccCCCCcCEEECCCC-CCCcCCH-HHhcCCCCCCEEECCCC-ccCcC-CHHH
Confidence 46788888888753 332111 11456788999999886 3333221 12256788999999887 54421 1122
Q ss_pred HhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEE------------------
Q 021374 162 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSL------------------ 223 (313)
Q Consensus 162 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L------------------ 223 (313)
...+++|++|+++++ .++..... ....+++|+.|+++++ .+.... ...+++|+.|
T Consensus 137 ~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~L~~ 209 (390)
T 3o6n_A 137 FHNTPKLTTLSMSNN-NLERIEDD-TFQATTSLQNLQLSSN-RLTHVD----LSLIPSLFHANVSYNLLSTLAIPIAVEE 209 (390)
T ss_dssp TTTCTTCCEEECCSS-CCCBCCTT-TTSSCTTCCEEECCSS-CCSBCC----GGGCTTCSEEECCSSCCSEEECCSSCSE
T ss_pred hcCCCCCcEEECCCC-ccCccChh-hccCCCCCCEEECCCC-cCCccc----cccccccceeecccccccccCCCCcceE
Confidence 346788999999886 34332111 1234788999999884 444321 1233443333
Q ss_pred ----------------------EeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCC
Q 021374 224 ----------------------NLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRI 281 (313)
Q Consensus 224 ----------------------~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 281 (313)
+++++ .+.+ ...+..+++|++|++++| .++......+.++++|++|++++| .+
T Consensus 210 L~l~~n~l~~~~~~~~~~L~~L~l~~n-~l~~--~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l 284 (390)
T 3o6n_A 210 LDASHNSINVVRGPVNVELTILKLQHN-NLTD--TAWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNN-RL 284 (390)
T ss_dssp EECCSSCCCEEECCCCSSCCEEECCSS-CCCC--CGGGGGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSS-CC
T ss_pred EECCCCeeeeccccccccccEEECCCC-CCcc--cHHHcCCCCccEEECCCC-cCCCcChhHccccccCCEEECCCC-cC
Confidence 33332 2222 123456677777777776 455443444566777777777776 55
Q ss_pred ChHHHHHHHHhCCCccEeecCCcc
Q 021374 282 TDVGVMAIAEGCSSLEFLSSGAEM 305 (313)
Q Consensus 282 ~~~~~~~l~~~~~~L~~L~l~~~~ 305 (313)
+.... ....+|+|+.|++++|.
T Consensus 285 ~~~~~--~~~~l~~L~~L~L~~n~ 306 (390)
T 3o6n_A 285 VALNL--YGQPIPTLKVLDLSHNH 306 (390)
T ss_dssp CEEEC--SSSCCTTCCEEECCSSC
T ss_pred cccCc--ccCCCCCCCEEECCCCc
Confidence 44211 11346777777777763
No 77
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.21 E-value=2.7e-12 Score=115.49 Aligned_cols=182 Identities=18% Similarity=0.211 Sum_probs=111.8
Q ss_pred CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccch-HHHHHHHHhCC
Q 021374 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLD-KSLQLIADNYQ 192 (313)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~l~~l~~~~~ 192 (313)
.+|+.|+++++.. ....+ ...+++|++|+++++ .+++.... ....+++|++|+++++ .++. ..++.....++
T Consensus 331 ~~L~~L~l~~n~~-~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~ 403 (562)
T 3a79_B 331 MNIKMLSISDTPF-IHMVC---PPSPSSFTFLNFTQN-VFTDSVFQ-GCSTLKRLQTLILQRN-GLKNFFKVALMTKNMS 403 (562)
T ss_dssp CCCSEEEEESSCC-CCCCC---CSSCCCCCEEECCSS-CCCTTTTT-TCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCT
T ss_pred CcceEEEccCCCc-ccccC---ccCCCCceEEECCCC-ccccchhh-hhcccCCCCEEECCCC-CcCCcccchhhhcCCC
Confidence 4566666666522 21110 145678888888887 55542222 2245788888888885 4443 22333334578
Q ss_pred CCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcC-CCCCEEecCCCCCCChHHHHHhhCCCCCc
Q 021374 193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL-AHLKFLDLCGAQNLSDEGLACIAKCKNLV 271 (313)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 271 (313)
+|+.|+++++ .+........+..+++|+.|+++++ .+++..+. .+ ++|++|++++| .++. ....+.++++|+
T Consensus 404 ~L~~L~l~~N-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~---~l~~~L~~L~L~~N-~l~~-ip~~~~~l~~L~ 476 (562)
T 3a79_B 404 SLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSN-MLTGSVFR---CLPPKVKVLDLHNN-RIMS-IPKDVTHLQALQ 476 (562)
T ss_dssp TCCEEECTTS-CCBSCCSSCCCCCCTTCCEEECCSS-CCCGGGGS---SCCTTCSEEECCSS-CCCC-CCTTTTSSCCCS
T ss_pred CCCEEECCCC-cCCCccChhhhcCcccCCEEECCCC-CCCcchhh---hhcCcCCEEECCCC-cCcc-cChhhcCCCCCC
Confidence 8888888884 4432001112345688888888884 45443222 23 68999999888 5553 222344788999
Q ss_pred eeeccCCCCCChHHHHHHHHhCCCccEeecCCcccccccc
Q 021374 272 SLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCSCS 311 (313)
Q Consensus 272 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 311 (313)
+|++++| .++..... .+..+++|+.|++++|.--|.|+
T Consensus 477 ~L~L~~N-~l~~l~~~-~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 477 ELNVASN-QLKSVPDG-VFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp EEECCSS-CCCCCCTT-STTTCTTCCCEECCSCCBCCCHH
T ss_pred EEECCCC-CCCCCCHH-HHhcCCCCCEEEecCCCcCCCcc
Confidence 9999888 66532222 24467889999999988777775
No 78
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.21 E-value=7.7e-13 Score=120.54 Aligned_cols=203 Identities=14% Similarity=0.134 Sum_probs=119.5
Q ss_pred ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCCh-HHHHHHHh-----cCCCCcEEEecCCcccCH
Q 021374 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISD-KGIEIISS-----TCPELKVFSIYWNVRVTD 155 (313)
Q Consensus 82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~-----~~~~L~~L~l~~~~~~~~ 155 (313)
.+++|+.|+++++..... .. ..+..+++|+.|+++++..++. .....+.. .+++|++|+++++ .++
T Consensus 247 ~l~~L~~L~L~~n~l~~~-~p-----~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~- 318 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTK-LP-----TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLK- 318 (636)
T ss_dssp GCTTCCEEEEECCTTCSS-CC-----TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCS-
T ss_pred ccCCCCEEEecCCcCCcc-Ch-----HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCC-
Confidence 678999999998642221 11 1245778999999999743665 33333322 2489999999988 555
Q ss_pred HHHHH--HHhcCCCCcEEeccCCcccc-hHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCC-CCEEEeCCCCCC
Q 021374 156 IGIQH--LVKNCKHIIDLNLSGCKNLL-DKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSS-LRSLNLYALSGF 231 (313)
Q Consensus 156 ~~~~~--~~~~~~~L~~L~l~~~~~~~-~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~ 231 (313)
.++. ....+++|++|+++++. ++ . ++. ...+++|+.|+++++ .+. .++..+..+++ |+.|+++++ .+
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N~-l~g~--ip~-~~~l~~L~~L~L~~N-~l~--~lp~~l~~l~~~L~~L~Ls~N-~l 389 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYNQ-LEGK--LPA-FGSEIKLASLNLAYN-QIT--EIPANFCGFTEQVENLSFAHN-KL 389 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSCC-CEEE--CCC-CEEEEEESEEECCSS-EEE--ECCTTSEEECTTCCEEECCSS-CC
T ss_pred -ccCchhhhccCCCCCEEeCcCCc-Cccc--hhh-hCCCCCCCEEECCCC-ccc--cccHhhhhhcccCcEEEccCC-cC
Confidence 2333 44678899999998863 43 2 111 233577888888774 333 12222455666 888888774 33
Q ss_pred CHHHHHHhhc--CCCCCEEecCCCCCCChHHHHHhh-------CCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecC
Q 021374 232 TDEAYKKISL--LAHLKFLDLCGAQNLSDEGLACIA-------KCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSG 302 (313)
Q Consensus 232 ~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~ 302 (313)
. .....+.. +++|++|++++| .++......+. .+++|++|++++| .++.. ...++..+++|+.|+++
T Consensus 390 ~-~lp~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~l-p~~~~~~l~~L~~L~Ls 465 (636)
T 4eco_A 390 K-YIPNIFDAKSVSVMSAIDFSYN-EIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKF-PKELFSTGSPLSSINLM 465 (636)
T ss_dssp S-SCCSCCCTTCSSCEEEEECCSS-CTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSC-CTHHHHTTCCCSEEECC
T ss_pred c-ccchhhhhcccCccCEEECcCC-cCCCcchhhhcccccccccCCCCCEEECcCC-ccCcC-CHHHHccCCCCCEEECC
Confidence 3 11222222 336777777776 44443323333 4557777777766 55422 22334456677777776
Q ss_pred Ccc
Q 021374 303 AEM 305 (313)
Q Consensus 303 ~~~ 305 (313)
+|.
T Consensus 466 ~N~ 468 (636)
T 4eco_A 466 GNM 468 (636)
T ss_dssp SSC
T ss_pred CCC
Confidence 653
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.20 E-value=1.2e-12 Score=115.34 Aligned_cols=219 Identities=16% Similarity=0.132 Sum_probs=148.1
Q ss_pred CcceeecccccccchhhHHHHhhccccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHH
Q 021374 57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS 136 (313)
Q Consensus 57 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 136 (313)
+..+.+++.+...... ... .+..+++|+.|+++++. ++.... +..+++|+.|+++++ .++..
T Consensus 34 ~~L~~L~Ls~n~l~~~-~~~--~~~~l~~L~~L~Ls~N~-l~~~~~-------l~~l~~L~~L~Ls~N-~l~~l------ 95 (487)
T 3oja_A 34 WNVKELDLSGNPLSQI-SAA--DLAPFTKLELLNLSSNV-LYETLD-------LESLSTLRTLDLNNN-YVQEL------ 95 (487)
T ss_dssp GGCCEEECCSSCCCCC-CGG--GGTTCTTCCEEECTTSC-CEEEEE-------CTTCTTCCEEECCSS-EEEEE------
T ss_pred CCccEEEeeCCcCCCC-CHH--HHhCCCCCCEEEeeCCC-CCCCcc-------cccCCCCCEEEecCC-cCCCC------
Confidence 3457777776543321 111 23467899999999874 332111 457799999999986 44332
Q ss_pred hcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhh
Q 021374 137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIK 216 (313)
Q Consensus 137 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 216 (313)
...++|+.|+++++ .++.... ..+++|+.|+++++ .++......+ ..+++|+.|++++ +.+.......+...
T Consensus 96 ~~~~~L~~L~L~~N-~l~~~~~----~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~Ls~-N~l~~~~~~~l~~~ 167 (487)
T 3oja_A 96 LVGPSIETLHAANN-NISRVSC----SRGQGKKNIYLANN-KITMLRDLDE-GCRSRVQYLDLKL-NEIDTVNFAELAAS 167 (487)
T ss_dssp EECTTCCEEECCSS-CCCCEEE----CCCSSCEEEECCSS-CCCSGGGBCG-GGGSSEEEEECTT-SCCCEEEGGGGGGG
T ss_pred CCCCCcCEEECcCC-cCCCCCc----cccCCCCEEECCCC-CCCCCCchhh-cCCCCCCEEECCC-CCCCCcChHHHhhh
Confidence 23489999999988 5554322 24689999999996 4444222122 3479999999999 46665333344457
Q ss_pred CCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCc
Q 021374 217 CSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSL 296 (313)
Q Consensus 217 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 296 (313)
+++|+.|+++++ .++.. .....+++|++|++++| .++... ..+..+++|+.|++++| .++.. ...+..+++|
T Consensus 168 l~~L~~L~Ls~N-~l~~~--~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~l~~L~~L~Ls~N-~l~~l--p~~l~~l~~L 239 (487)
T 3oja_A 168 SDTLEHLNLQYN-FIYDV--KGQVVFAKLKTLDLSSN-KLAFMG-PEFQSAAGVTWISLRNN-KLVLI--EKALRFSQNL 239 (487)
T ss_dssp TTTCCEEECTTS-CCCEE--ECCCCCTTCCEEECCSS-CCCEEC-GGGGGGTTCSEEECTTS-CCCEE--CTTCCCCTTC
T ss_pred CCcccEEecCCC-ccccc--cccccCCCCCEEECCCC-CCCCCC-HhHcCCCCccEEEecCC-cCccc--chhhccCCCC
Confidence 899999999985 45432 22336899999999999 666532 23778899999999998 66642 1223457899
Q ss_pred cEeecCCcccccc
Q 021374 297 EFLSSGAEMNCCS 309 (313)
Q Consensus 297 ~~L~l~~~~~~~~ 309 (313)
+.|++++|.-.|.
T Consensus 240 ~~L~l~~N~l~c~ 252 (487)
T 3oja_A 240 EHFDLRGNGFHCG 252 (487)
T ss_dssp CEEECTTCCBCHH
T ss_pred CEEEcCCCCCcCc
Confidence 9999999865543
No 80
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.19 E-value=6.3e-13 Score=119.24 Aligned_cols=208 Identities=14% Similarity=0.122 Sum_probs=137.8
Q ss_pred cCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHH
Q 021374 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV 162 (313)
Q Consensus 83 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 162 (313)
.++++.|+++++. ++.... ..+..+++|++|+++++ .+....... ...+++|++|+++++ .+....... +
T Consensus 25 ~~~L~~L~Ls~n~-l~~~~~-----~~~~~l~~L~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~~~-~ 94 (549)
T 2z81_A 25 TAAMKSLDLSFNK-ITYIGH-----GDLRACANLQVLILKSS-RINTIEGDA-FYSLGSLEHLDLSDN-HLSSLSSSW-F 94 (549)
T ss_dssp CTTCCEEECCSSC-CCEECS-----STTSSCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECTTS-CCCSCCHHH-H
T ss_pred CCCccEEECcCCc-cCccCh-----hhhhcCCcccEEECCCC-CcCccChhh-ccccccCCEEECCCC-ccCccCHHH-h
Confidence 3689999999864 432211 11467799999999986 444332222 256899999999988 555432222 3
Q ss_pred hcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcC
Q 021374 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL 242 (313)
Q Consensus 163 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 242 (313)
..+++|++|+++++ .++..........+++|+.|+++++..+.... ...+..+++|+.|+++++ .+.......+..+
T Consensus 95 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l 171 (549)
T 2z81_A 95 GPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR-RIDFAGLTSLNELEIKAL-SLRNYQSQSLKSI 171 (549)
T ss_dssp TTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEET-TCCEECTTTTTTC
T ss_pred ccCCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccC-HhhhhcccccCeeeccCC-cccccChhhhhcc
Confidence 57899999999986 34331121223457899999999864333211 112467899999999884 5555455667788
Q ss_pred CCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHH--HHHHHHhCCCccEeecCCcc
Q 021374 243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVG--VMAIAEGCSSLEFLSSGAEM 305 (313)
Q Consensus 243 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~~L~~L~l~~~~ 305 (313)
++|++|+++++ ..+......+..+++|++|++++| .++... ...+...+++|+.|++.++.
T Consensus 172 ~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 234 (549)
T 2z81_A 172 RDIHHLTLHLS-ESAFLLEIFADILSSVRYLELRDT-NLARFQFSPLPVDEVSSPMKKLAFRGSV 234 (549)
T ss_dssp SEEEEEEEECS-BSTTHHHHHHHSTTTBSEEEEESC-BCTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred ccCceEecccC-cccccchhhHhhcccccEEEccCC-ccccccccccchhhhhhcccceeccccc
Confidence 99999999988 454433333457899999999988 554421 11122357889999998874
No 81
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.19 E-value=5.3e-12 Score=117.85 Aligned_cols=181 Identities=16% Similarity=0.190 Sum_probs=89.8
Q ss_pred CCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHH-------hcCCCCcEEeccCCcccchHHH
Q 021374 112 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV-------KNCKHIIDLNLSGCKNLLDKSL 184 (313)
Q Consensus 112 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-------~~~~~L~~L~l~~~~~~~~~~l 184 (313)
.+++|+.|+|+++......+ .....+++|+.|+++++..++...++... ..+++|+.|+++++ .++. +
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP--~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~--i 563 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLP--DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEE--F 563 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCC--GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCB--C
T ss_pred cCCCCCEEECcCCCCCccCh--HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCc--c
Confidence 56777777777753222111 22256677777777776325541122111 23357777777775 3332 2
Q ss_pred HH--HHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCC-CCEEecCCCC-------
Q 021374 185 QL--IADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAH-LKFLDLCGAQ------- 254 (313)
Q Consensus 185 ~~--l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~------- 254 (313)
+. ....+++|+.|+++++ .+. .++ .+..+++|+.|+++++ .+. .....+..+++ |++|++++|.
T Consensus 564 p~~~~l~~L~~L~~L~Ls~N-~l~--~lp-~~~~L~~L~~L~Ls~N-~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~ 637 (876)
T 4ecn_A 564 PASASLQKMVKLGLLDCVHN-KVR--HLE-AFGTNVKLTDLKLDYN-QIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNI 637 (876)
T ss_dssp CCHHHHTTCTTCCEEECTTS-CCC--BCC-CCCTTSEESEEECCSS-CCS-CCCTTSCEECTTCCEEECCSSCCCSCCSC
T ss_pred CChhhhhcCCCCCEEECCCC-Ccc--cch-hhcCCCcceEEECcCC-ccc-cchHHHhhccccCCEEECcCCCCCcCchh
Confidence 22 2334677777777763 343 122 2345556666666553 222 11222334444 5555555442
Q ss_pred -----------------CCChHHH---HHhh--CCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374 255 -----------------NLSDEGL---ACIA--KCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM 305 (313)
Q Consensus 255 -----------------~~~~~~~---~~l~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 305 (313)
.++.... ..+. .+++|++|++++| .++.. ...++..+++|+.|++++|.
T Consensus 638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~l-p~~~~~~l~~L~~L~Ls~N~ 708 (876)
T 4ecn_A 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKF-PTELFATGSPISTIILSNNL 708 (876)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSC-CHHHHHTTCCCSEEECCSCC
T ss_pred hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCcc-CHHHHccCCCCCEEECCCCc
Confidence 2211100 0001 1236667777666 45422 23344567788888887764
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.19 E-value=5.2e-13 Score=108.67 Aligned_cols=187 Identities=19% Similarity=0.192 Sum_probs=128.7
Q ss_pred CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCC
Q 021374 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (313)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~ 193 (313)
++|+.|+++++ .+...... ....+++|++|+++++ .++... ...+..+++|++|+++++ .++.... .....+++
T Consensus 37 ~~l~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~i~-~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~ 110 (270)
T 2o6q_A 37 ADTKKLDLQSN-KLSSLPSK-AFHRLTKLRLLYLNDN-KLQTLP-AGIFKELKNLETLWVTDN-KLQALPI-GVFDQLVN 110 (270)
T ss_dssp TTCSEEECCSS-CCSCCCTT-SSSSCTTCCEEECCSS-CCSCCC-TTTTSSCTTCCEEECCSS-CCCCCCT-TTTTTCSS
T ss_pred CCCCEEECcCC-CCCeeCHH-HhcCCCCCCEEECCCC-ccCeeC-hhhhcCCCCCCEEECCCC-cCCcCCH-hHcccccC
Confidence 57999999986 33332211 2256899999999987 444221 122346799999999985 3443221 12235789
Q ss_pred CcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCcee
Q 021374 194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSL 273 (313)
Q Consensus 194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 273 (313)
|+.|+++++ .+.... ...+..+++|+.|+++++ .+.......+..+++|++|++++| .++......+.++++|++|
T Consensus 111 L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 186 (270)
T 2o6q_A 111 LAELRLDRN-QLKSLP-PRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTL 186 (270)
T ss_dssp CCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred CCEEECCCC-ccCeeC-HHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEE
Confidence 999999984 444311 123467899999999985 454433444678899999999998 5655443446778999999
Q ss_pred eccCCCCCChHHHHHHHHhCCCccEeecCCccccccccC
Q 021374 274 NLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCSCSH 312 (313)
Q Consensus 274 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 312 (313)
++++| .++..... .+..+++|+.|++++|.--|.|..
T Consensus 187 ~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 187 KLDNN-QLKRVPEG-AFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp ECCSS-CCSCCCTT-TTTTCTTCCEEECCSSCBCCSSSS
T ss_pred ECCCC-cCCcCCHH-HhccccCCCEEEecCCCeeCCCcc
Confidence 99998 66543322 234688999999999988888863
No 83
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.19 E-value=1e-13 Score=116.40 Aligned_cols=205 Identities=20% Similarity=0.181 Sum_probs=95.3
Q ss_pred cccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHH
Q 021374 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (313)
Q Consensus 81 ~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 160 (313)
..+++|+.|+++++. ++... ...+..+++|++|+++++ .++.... ...++|++|+++++ .+.... ..
T Consensus 75 ~~l~~L~~L~L~~n~-l~~~~-----~~~~~~l~~L~~L~L~~n-~l~~l~~----~~~~~L~~L~l~~n-~i~~~~-~~ 141 (332)
T 2ft3_A 75 KGLQHLYALVLVNNK-ISKIH-----EKAFSPLRKLQKLYISKN-HLVEIPP----NLPSSLVELRIHDN-RIRKVP-KG 141 (332)
T ss_dssp TTCTTCCEEECCSSC-CCEEC-----GGGSTTCTTCCEEECCSS-CCCSCCS----SCCTTCCEEECCSS-CCCCCC-SG
T ss_pred hCCCCCcEEECCCCc-cCccC-----HhHhhCcCCCCEEECCCC-cCCccCc----cccccCCEEECCCC-ccCccC-Hh
Confidence 355677777777653 32211 111345677777777765 3321110 12267777777766 443221 11
Q ss_pred HHhcCCCCcEEeccCCcccchHHH-HHHHHhC--------------------CCCcEEecCCCCCCCHHHHHHHHhhCCC
Q 021374 161 LVKNCKHIIDLNLSGCKNLLDKSL-QLIADNY--------------------QELESLNLTRCVKLTDGGLQKILIKCSS 219 (313)
Q Consensus 161 ~~~~~~~L~~L~l~~~~~~~~~~l-~~l~~~~--------------------~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 219 (313)
....+++|++|+++++ .++.... ......+ ++|+.|+++++ .+..... ..+..+++
T Consensus 142 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n-~i~~~~~-~~l~~l~~ 218 (332)
T 2ft3_A 142 VFSGLRNMNCIEMGGN-PLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHN-KIQAIEL-EDLLRYSK 218 (332)
T ss_dssp GGSSCSSCCEEECCSC-CCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSS-CCCCCCT-TSSTTCTT
T ss_pred HhCCCccCCEEECCCC-ccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCC-cCCccCH-HHhcCCCC
Confidence 2345778888888775 3322110 0000111 23334444332 2221100 11234455
Q ss_pred CCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHh-----CC
Q 021374 220 LRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEG-----CS 294 (313)
Q Consensus 220 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~-----~~ 294 (313)
|+.|+++++ .+.......+..+++|++|++++| .++. ....+.++++|++|++++| .++..+...+... .+
T Consensus 219 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~-lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~ 294 (332)
T 2ft3_A 219 LYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNN-KLSR-VPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRA 294 (332)
T ss_dssp CSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSS-CCCB-CCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSC
T ss_pred CCEEECCCC-cCCcCChhHhhCCCCCCEEECCCC-cCee-cChhhhcCccCCEEECCCC-CCCccChhHccccccccccc
Confidence 566665552 333222233455566666666665 3432 1122455666666666665 4544333222211 34
Q ss_pred CccEeecCCcc
Q 021374 295 SLEFLSSGAEM 305 (313)
Q Consensus 295 ~L~~L~l~~~~ 305 (313)
.|+.|++++|.
T Consensus 295 ~l~~L~l~~N~ 305 (332)
T 2ft3_A 295 YYNGISLFNNP 305 (332)
T ss_dssp CBSEEECCSSS
T ss_pred cccceEeecCc
Confidence 56666666653
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.18 E-value=2.9e-11 Score=99.40 Aligned_cols=166 Identities=25% Similarity=0.267 Sum_probs=112.3
Q ss_pred CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCC
Q 021374 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (313)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~ 193 (313)
++|+.|+++++. +... .. ...+++|++|+++++ .+++.. . ...+++|++|+++++ .+++ +.. ...+++
T Consensus 46 ~~L~~L~l~~~~-i~~~--~~-~~~l~~L~~L~L~~n-~l~~~~--~-l~~l~~L~~L~l~~n-~l~~--~~~-l~~l~~ 113 (291)
T 1h6t_A 46 NSIDQIIANNSD-IKSV--QG-IQYLPNVTKLFLNGN-KLTDIK--P-LANLKNLGWLFLDEN-KVKD--LSS-LKDLKK 113 (291)
T ss_dssp HTCCEEECTTSC-CCCC--TT-GGGCTTCCEEECCSS-CCCCCG--G-GTTCTTCCEEECCSS-CCCC--GGG-GTTCTT
T ss_pred CcccEEEccCCC-cccC--hh-HhcCCCCCEEEccCC-ccCCCc--c-cccCCCCCEEECCCC-cCCC--Chh-hccCCC
Confidence 677888887763 3222 11 256788899988887 554422 1 456788899988885 4444 222 234788
Q ss_pred CcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCcee
Q 021374 194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSL 273 (313)
Q Consensus 194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 273 (313)
|+.|+++++ .+.+ +. .+..+++|+.|+++++ .+... ..+..+++|++|++++| .+++... +..+++|++|
T Consensus 114 L~~L~L~~n-~i~~--~~-~l~~l~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L 183 (291)
T 1h6t_A 114 LKSLSLEHN-GISD--IN-GLVHLPQLESLYLGNN-KITDI--TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNL 183 (291)
T ss_dssp CCEEECTTS-CCCC--CG-GGGGCTTCCEEECCSS-CCCCC--GGGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEE
T ss_pred CCEEECCCC-cCCC--Ch-hhcCCCCCCEEEccCC-cCCcc--hhhccCCCCCEEEccCC-ccccchh--hcCCCccCEE
Confidence 899998884 4544 22 2467788899988874 44432 45678888999999888 5554332 7778889999
Q ss_pred eccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374 274 NLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM 305 (313)
Q Consensus 274 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 305 (313)
++++| .+++.. . ...+++|+.|++++|.
T Consensus 184 ~L~~N-~i~~l~--~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 184 YLSKN-HISDLR--A-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp ECCSS-CCCBCG--G-GTTCTTCSEEEEEEEE
T ss_pred ECCCC-cCCCCh--h-hccCCCCCEEECcCCc
Confidence 99888 666542 2 3467888888888764
No 85
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.17 E-value=2.6e-11 Score=108.02 Aligned_cols=132 Identities=19% Similarity=0.249 Sum_probs=81.6
Q ss_pred cCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCH-HHHHHHHhhCCCCCEEEeCCCCCCCH-HHHHHhhc
Q 021374 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTD-GGLQKILIKCSSLRSLNLYALSGFTD-EAYKKISL 241 (313)
Q Consensus 164 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~ 241 (313)
.+++|++|+++++ .+++.....+ ..+++|+.|+++++ .+.. ..+...+..+++|+.|+++++ .+.. .....+..
T Consensus 322 ~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~~~~~ 397 (520)
T 2z7x_B 322 KISPFLHLDFSNN-LLTDTVFENC-GHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKKGDCSW 397 (520)
T ss_dssp SCCCCCEEECCSS-CCCTTTTTTC-CCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGGCSCCC
T ss_pred hCCcccEEEeECC-ccChhhhhhh-ccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCC-cCCcccccchhcc
Confidence 5677888888875 3443222222 34678888888874 5553 234445677788888888874 3433 22223456
Q ss_pred CCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374 242 LAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM 305 (313)
Q Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 305 (313)
+++|++|++++| .++......+ .++|++|++++| .++.. ...+. .+++|+.|++++|.
T Consensus 398 l~~L~~L~Ls~N-~l~~~~~~~l--~~~L~~L~Ls~N-~l~~i-p~~~~-~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 398 TKSLLSLNMSSN-ILTDTIFRCL--PPRIKVLDLHSN-KIKSI-PKQVV-KLEALQELNVASNQ 455 (520)
T ss_dssp CTTCCEEECCSS-CCCGGGGGSC--CTTCCEEECCSS-CCCCC-CGGGG-GCTTCCEEECCSSC
T ss_pred CccCCEEECcCC-CCCcchhhhh--cccCCEEECCCC-ccccc-chhhh-cCCCCCEEECCCCc
Confidence 778888888887 5554332212 168888888888 66522 12223 68889999998874
No 86
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.17 E-value=1e-11 Score=91.41 Aligned_cols=106 Identities=25% Similarity=0.278 Sum_probs=61.8
Q ss_pred hCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChH-HHHHhhCCC
Q 021374 190 NYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDE-GLACIAKCK 268 (313)
Q Consensus 190 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~ 268 (313)
.+++|+.|+++++ .+... ..+..+++|+.|+++++ .+.......+..+++|++|++++| .+++. ....+..++
T Consensus 40 ~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~ 113 (149)
T 2je0_A 40 EFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLE 113 (149)
T ss_dssp TCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGCT
T ss_pred hcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhCC
Confidence 3566666666663 33331 22345666777777663 343323344455777777777777 45543 234566677
Q ss_pred CCceeeccCCCCCChHHH--HHHHHhCCCccEeecC
Q 021374 269 NLVSLNLTWCVRITDVGV--MAIAEGCSSLEFLSSG 302 (313)
Q Consensus 269 ~L~~L~l~~~~~~~~~~~--~~l~~~~~~L~~L~l~ 302 (313)
+|++|++++| .+++... ...+..+|+|+.|+++
T Consensus 114 ~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 114 NLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 7777777777 5544332 2345567778877765
No 87
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.15 E-value=1.6e-11 Score=90.45 Aligned_cols=105 Identities=21% Similarity=0.254 Sum_probs=58.9
Q ss_pred cCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHH-HHHHhhcC
Q 021374 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDE-AYKKISLL 242 (313)
Q Consensus 164 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~ 242 (313)
.+++|+.|+++++ .++.. . ....+++|+.|+++++ .+... +...+..+++|+.|+++++ .+++. .+..+..+
T Consensus 40 ~l~~L~~L~l~~n-~l~~~--~-~~~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l 112 (149)
T 2je0_A 40 EFEELEFLSTINV-GLTSI--A-NLPKLNKLKKLELSDN-RVSGG-LEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKL 112 (149)
T ss_dssp TCTTCCEEECTTS-CCCCC--T-TCCCCTTCCEEECCSS-CCCSC-THHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGC
T ss_pred hcCCCcEEECcCC-CCCCc--h-hhhcCCCCCEEECCCC-cccch-HHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhC
Confidence 3455555555553 23221 1 1123566666666663 34321 3344456777777777764 34442 33556677
Q ss_pred CCCCEEecCCCCCCChHHH---HHhhCCCCCceeecc
Q 021374 243 AHLKFLDLCGAQNLSDEGL---ACIAKCKNLVSLNLT 276 (313)
Q Consensus 243 ~~L~~L~l~~~~~~~~~~~---~~l~~~~~L~~L~l~ 276 (313)
++|++|++++| .+++... ..+..+++|++|+++
T Consensus 113 ~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 113 ENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 78888888877 4544322 346667888888775
No 88
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.15 E-value=3.2e-11 Score=108.71 Aligned_cols=166 Identities=25% Similarity=0.269 Sum_probs=86.7
Q ss_pred CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCC
Q 021374 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (313)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~ 193 (313)
++|+.|+++++. +.... . ...+++|+.|+|+++ .+..... +..+++|+.|+++++ .+.. ++.+ ..+++
T Consensus 43 ~~L~~L~l~~n~-i~~l~--~-l~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N-~l~~--l~~l-~~l~~ 110 (605)
T 1m9s_A 43 NSIDQIIANNSD-IKSVQ--G-IQYLPNVTKLFLNGN-KLTDIKP---LTNLKNLGWLFLDEN-KIKD--LSSL-KDLKK 110 (605)
T ss_dssp TTCCCCBCTTCC-CCCCT--T-GGGCTTCCEEECTTS-CCCCCGG---GGGCTTCCEEECCSS-CCCC--CTTS-TTCTT
T ss_pred CCCCEEECcCCC-CCCCh--H-HccCCCCCEEEeeCC-CCCCChh---hccCCCCCEEECcCC-CCCC--Chhh-ccCCC
Confidence 566666666542 22211 1 245666666666665 3332211 345666666666664 3333 1122 23566
Q ss_pred CcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCcee
Q 021374 194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSL 273 (313)
Q Consensus 194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 273 (313)
|+.|+++++ .+.+ +. -+..+++|+.|+++++ .+... ..+..+++|+.|+|++| .+++... +..+++|++|
T Consensus 111 L~~L~Ls~N-~l~~--l~-~l~~l~~L~~L~Ls~N-~l~~l--~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L 180 (605)
T 1m9s_A 111 LKSLSLEHN-GISD--IN-GLVHLPQLESLYLGNN-KITDI--TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNL 180 (605)
T ss_dssp CCEEECTTS-CCCC--CG-GGGGCTTCSEEECCSS-CCCCC--GGGGSCTTCSEEECCSS-CCCCCGG--GTTCTTCCEE
T ss_pred CCEEEecCC-CCCC--Cc-cccCCCccCEEECCCC-ccCCc--hhhcccCCCCEEECcCC-cCCCchh--hccCCCCCEE
Confidence 666666663 3332 11 1355666666666663 33332 34556666666666666 4443222 5566666666
Q ss_pred eccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374 274 NLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM 305 (313)
Q Consensus 274 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 305 (313)
+|++| .+++. .. +..+++|+.|+|++|.
T Consensus 181 ~Ls~N-~i~~l--~~-l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 181 YLSKN-HISDL--RA-LAGLKNLDVLELFSQE 208 (605)
T ss_dssp ECCSS-CCCBC--GG-GTTCTTCSEEECCSEE
T ss_pred ECcCC-CCCCC--hH-HccCCCCCEEEccCCc
Confidence 66666 55443 11 2346666666666653
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.15 E-value=1.8e-12 Score=106.51 Aligned_cols=177 Identities=15% Similarity=0.150 Sum_probs=122.7
Q ss_pred CCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHh
Q 021374 111 GSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADN 190 (313)
Q Consensus 111 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~ 190 (313)
+.+++++.+++.+. .++.... ...++++.|+++++ .++..... .+..+++|++|+++++ .++.... . ..
T Consensus 7 ~~l~~l~~l~~~~~-~l~~ip~----~~~~~l~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~--~-~~ 75 (290)
T 1p9a_G 7 SKVASHLEVNCDKR-NLTALPP----DLPKDTTILHLSEN-LLYTFSLA-TLMPYTRLTQLNLDRA-ELTKLQV--D-GT 75 (290)
T ss_dssp ECSTTCCEEECTTS-CCSSCCS----CCCTTCCEEECTTS-CCSEEEGG-GGTTCTTCCEEECTTS-CCCEEEC--C-SC
T ss_pred cccCCccEEECCCC-CCCcCCC----CCCCCCCEEEcCCC-cCCccCHH-HhhcCCCCCEEECCCC-ccCcccC--C-CC
Confidence 45678888888774 3332110 22368999999988 55543222 2356899999999986 4443211 1 45
Q ss_pred CCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCC
Q 021374 191 YQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNL 270 (313)
Q Consensus 191 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 270 (313)
+++|+.|+++++ .+.. +...+..+++|+.|+++++ .++......+..+++|++|++++| .++......+.++++|
T Consensus 76 l~~L~~L~Ls~N-~l~~--l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 150 (290)
T 1p9a_G 76 LPVLGTLDLSHN-QLQS--LPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKL 150 (290)
T ss_dssp CTTCCEEECCSS-CCSS--CCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTC
T ss_pred CCcCCEEECCCC-cCCc--CchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCC
Confidence 899999999994 5542 3333467899999999984 555433445678899999999999 5654433446678999
Q ss_pred ceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374 271 VSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM 305 (313)
Q Consensus 271 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 305 (313)
++|++++| .++.... ..+..+++|+.|++++|.
T Consensus 151 ~~L~L~~N-~l~~l~~-~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 151 EKLSLANN-NLTELPA-GLLNGLENLDTLLLQENS 183 (290)
T ss_dssp CEEECTTS-CCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred CEEECCCC-cCCccCH-HHhcCcCCCCEEECCCCc
Confidence 99999998 6654322 234468899999999875
No 90
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.14 E-value=2.9e-09 Score=81.16 Aligned_cols=125 Identities=15% Similarity=0.142 Sum_probs=84.4
Q ss_pred HHHHHHhcCCCCcEEeccCCcccchHHHHHHHH---hCCCCcEEecCCCCCCCHHHHHHH---HhhCCCCCEEEeCCCCC
Q 021374 157 GIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRCVKLTDGGLQKI---LIKCSSLRSLNLYALSG 230 (313)
Q Consensus 157 ~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~ 230 (313)
.+..+....+.|++|+++++..+++.+...+.. ..++|++|++++ +.+.+.+...+ +...++|++|++++ ..
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~-n~i~~~g~~~l~~~L~~n~~L~~L~L~~-N~ 104 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVG-TRSNDPVAFALAEMLKVNNTLKSLNVES-NF 104 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTT-SCCCHHHHHHHHHHHHHCSSCCEEECCS-SC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcC-CCCChHHHHHHHHHHHhCCCcCEEECcC-Cc
Confidence 355556667888888888854677776665554 346788888888 46777665443 34557788888877 46
Q ss_pred CCHHHHHHhh----cCCCCCEEec--CCCCCCChHHHHHhh----CCCCCceeeccCCCCCChHH
Q 021374 231 FTDEAYKKIS----LLAHLKFLDL--CGAQNLSDEGLACIA----KCKNLVSLNLTWCVRITDVG 285 (313)
Q Consensus 231 ~~~~~~~~l~----~~~~L~~L~l--~~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~~~~~~ 285 (313)
+.+.+...++ ..++|++|+| ++| .+++.+...++ ..++|++|++++| .+++.+
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n-~i~~~~ 167 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFT-QQGPRL 167 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCS-SHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCC-CCChHH
Confidence 7776655443 5667888888 666 67777655443 4577888888777 666554
No 91
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.14 E-value=2e-12 Score=118.97 Aligned_cols=62 Identities=16% Similarity=0.198 Sum_probs=29.2
Q ss_pred hcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCc
Q 021374 240 SLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAE 304 (313)
Q Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 304 (313)
..+++|++|++++| .++......+.++++|++|++++| .++.... ..+..+++|+.|++++|
T Consensus 533 ~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~-~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 533 KGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGLN-NLNTLPA-SVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECTTS
T ss_pred cCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCCC-CCCcCCH-hHhCCCCCCCEEECCCC
Confidence 34455555555555 333221122445556666666555 4442211 12234566666666655
No 92
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.13 E-value=5.3e-12 Score=113.56 Aligned_cols=13 Identities=15% Similarity=0.220 Sum_probs=7.9
Q ss_pred ccCCcCeeeccCC
Q 021374 82 RYRHVREINLEFA 94 (313)
Q Consensus 82 ~~~~l~~L~l~~~ 94 (313)
.+++|+.|+++++
T Consensus 74 ~l~~L~~L~Ls~N 86 (562)
T 3a79_B 74 FLSELRVLRLSHN 86 (562)
T ss_dssp TCTTCCEEECCSC
T ss_pred cCCCccEEECCCC
Confidence 4566666666654
No 93
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.13 E-value=2.1e-10 Score=96.61 Aligned_cols=185 Identities=16% Similarity=0.181 Sum_probs=125.8
Q ss_pred CCCCCcEEecCCCCCCC-h---HHHHHH---HhcCCCCcEEEecCCcc-------cCHHHHHHHHhcCCCCcEEeccCCc
Q 021374 112 SLQDLESLNLNGCQKIS-D---KGIEII---SSTCPELKVFSIYWNVR-------VTDIGIQHLVKNCKHIIDLNLSGCK 177 (313)
Q Consensus 112 ~~~~L~~L~l~~~~~~~-~---~~~~~~---~~~~~~L~~L~l~~~~~-------~~~~~~~~~~~~~~~L~~L~l~~~~ 177 (313)
....++.|.+..+. .+ . ..+..+ ...+++|+.|.+..... +....+..+...+|+|++|.++++.
T Consensus 105 ~~~~v~~L~lg~~~-~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~ 183 (362)
T 2ra8_A 105 KLPSLKQITIGXWG-YEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN 183 (362)
T ss_dssp TGGGCSEEEECCCC-SSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB
T ss_pred CchhcceEEEcccc-cCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC
Confidence 34568888887643 33 1 233333 34678999999964311 1111355667788999999998863
Q ss_pred ccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHh-hCCCCCEEEeCCCCC--CCHH---HHH-Hh--hcCCCCCEE
Q 021374 178 NLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILI-KCSSLRSLNLYALSG--FTDE---AYK-KI--SLLAHLKFL 248 (313)
Q Consensus 178 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~--~~~~---~~~-~l--~~~~~L~~L 248 (313)
.+.. ..+ ..++|++|++..| .+...++..+.. .+|+|+.|.++.... ..+. .+. .+ ..+|+|++|
T Consensus 184 ~l~l---~~~--~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L 257 (362)
T 2ra8_A 184 NLSI---GKK--PRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWL 257 (362)
T ss_dssp TCBC---CSC--BCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEE
T ss_pred Ccee---ccc--cCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEE
Confidence 3322 111 2689999999885 678877776653 689999999853111 0111 111 12 258999999
Q ss_pred ecCCCCCCChHHHHHhh---CCCCCceeeccCCCCCChHHHHHHHH---hCCCccEeecCCcc
Q 021374 249 DLCGAQNLSDEGLACIA---KCKNLVSLNLTWCVRITDVGVMAIAE---GCSSLEFLSSGAEM 305 (313)
Q Consensus 249 ~l~~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~ 305 (313)
.+.+| .+++.+...+. .+++|++|+|++| .+++.+...+.. .+++|+.|+++.|.
T Consensus 258 ~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 258 GIVDA-EEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp EEESC-TTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred eCCCC-CCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 99998 67766555554 4789999999987 899998877764 47899999998875
No 94
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.12 E-value=8.7e-13 Score=118.84 Aligned_cols=184 Identities=13% Similarity=0.094 Sum_probs=125.2
Q ss_pred cccCCcCeeeccCCccCchHH--HHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHH
Q 021374 81 PRYRHVREINLEFAQDIEDRH--LELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGI 158 (313)
Q Consensus 81 ~~~~~l~~L~l~~~~~~~~~~--~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 158 (313)
..+++|+.|+++++. ++... ... +..+++|+.|+++++. +...... ...+++|++|+++++ .+.....
T Consensus 344 ~~~~~L~~L~l~~n~-l~~~~~~~~~-----~~~~~~L~~L~l~~n~-l~~~~~~--~~~l~~L~~L~l~~n-~l~~~~~ 413 (570)
T 2z63_A 344 VDLPSLEFLDLSRNG-LSFKGCCSQS-----DFGTTSLKYLDLSFNG-VITMSSN--FLGLEQLEHLDFQHS-NLKQMSE 413 (570)
T ss_dssp CBCTTCCEEECCSSC-CBEEEEEEHH-----HHTCSCCCEEECCSCS-EEEEEEE--EETCTTCCEEECTTS-EEESCTT
T ss_pred ccCCCCCEEeCcCCc-cCcccccccc-----ccccCccCEEECCCCc-ccccccc--ccccCCCCEEEccCC-ccccccc
Confidence 356778888887753 32211 111 2356999999999863 3222111 356899999999987 4433211
Q ss_pred HHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHH
Q 021374 159 QHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKK 238 (313)
Q Consensus 159 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 238 (313)
......+++|++|+++++. +... .......+++|+.|++++| .+.+..++..+..+++|+.|+++++ .+.......
T Consensus 414 ~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~ 489 (570)
T 2z63_A 414 FSVFLSLRNLIYLDISHTH-TRVA-FNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTA 489 (570)
T ss_dssp SCTTTTCTTCCEEECTTSC-CEEC-CTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTT
T ss_pred hhhhhcCCCCCEEeCcCCc-cccc-chhhhhcCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCCC-ccccCChhh
Confidence 1223568999999999974 3332 1222345899999999996 4432223334567899999999985 566555566
Q ss_pred hhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCC
Q 021374 239 ISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCV 279 (313)
Q Consensus 239 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 279 (313)
+..+++|++|++++| .++......+.++++|++|++++|+
T Consensus 490 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 490 FNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 788999999999999 6665544557789999999999984
No 95
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.12 E-value=1e-12 Score=110.20 Aligned_cols=201 Identities=15% Similarity=0.119 Sum_probs=98.5
Q ss_pred CCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHh
Q 021374 84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK 163 (313)
Q Consensus 84 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 163 (313)
++++.|+++++. +.... ...+..+++|+.|+++++ .++...... ...+++|++|+++++ .++.. .. .
T Consensus 54 ~~l~~L~l~~n~-i~~~~-----~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~l--~~--~ 120 (332)
T 2ft3_A 54 PDTTLLDLQNND-ISELR-----KDDFKGLQHLYALVLVNN-KISKIHEKA-FSPLRKLQKLYISKN-HLVEI--PP--N 120 (332)
T ss_dssp TTCCEEECCSSC-CCEEC-----TTTTTTCTTCCEEECCSS-CCCEECGGG-STTCTTCCEEECCSS-CCCSC--CS--S
T ss_pred CCCeEEECCCCc-CCccC-----HhHhhCCCCCcEEECCCC-ccCccCHhH-hhCcCCCCEEECCCC-cCCcc--Cc--c
Confidence 566777776643 22211 111345567777777765 333221111 245677777777766 33311 10 1
Q ss_pred cCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHH-HHHhh--------------------CCCCCE
Q 021374 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQ-KILIK--------------------CSSLRS 222 (313)
Q Consensus 164 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~--------------------~~~L~~ 222 (313)
..++|++|+++++ .++.... .....+++|+.|+++++ .+...+.. ..+.. .++|+.
T Consensus 121 ~~~~L~~L~l~~n-~i~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~ 197 (332)
T 2ft3_A 121 LPSSLVELRIHDN-RIRKVPK-GVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNE 197 (332)
T ss_dssp CCTTCCEEECCSS-CCCCCCS-GGGSSCSSCCEEECCSC-CCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSC
T ss_pred ccccCCEEECCCC-ccCccCH-hHhCCCccCCEEECCCC-ccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCE
Confidence 1256777777764 2332111 11234667777777663 33210000 00011 134555
Q ss_pred EEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecC
Q 021374 223 LNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSG 302 (313)
Q Consensus 223 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~ 302 (313)
|+++++ .+.......+..+++|++|++++| .++......+..+++|++|++++| .++... ..+..+++|+.|+++
T Consensus 198 L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp--~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 198 LHLDHN-KIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNN-KLSRVP--AGLPDLKLLQVVYLH 272 (332)
T ss_dssp CBCCSS-CCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSS-CCCBCC--TTGGGCTTCCEEECC
T ss_pred EECCCC-cCCccCHHHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCC-cCeecC--hhhhcCccCCEEECC
Confidence 555552 333333334556667777777776 444433334556677777777766 444211 113356677777777
Q ss_pred Ccc
Q 021374 303 AEM 305 (313)
Q Consensus 303 ~~~ 305 (313)
+|.
T Consensus 273 ~N~ 275 (332)
T 2ft3_A 273 TNN 275 (332)
T ss_dssp SSC
T ss_pred CCC
Confidence 653
No 96
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.11 E-value=1.3e-12 Score=122.93 Aligned_cols=87 Identities=15% Similarity=0.171 Sum_probs=37.1
Q ss_pred ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHH-HHHHhcCCCCcEEEecCCcccCHHHHHH
Q 021374 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGI-EIISSTCPELKVFSIYWNVRVTDIGIQH 160 (313)
Q Consensus 82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 160 (313)
.+++|+.|+++++. +... ....+..+++|++|+++++ .+..... ......+++|++|+++++ .+.......
T Consensus 71 ~L~~L~~L~Ls~N~-l~~~-----~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~ 142 (844)
T 3j0a_A 71 NLPNLRILDLGSSK-IYFL-----HPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHP 142 (844)
T ss_dssp SCTTCCEEECTTCC-CCEE-----CTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCG
T ss_pred CCCCCCEEECCCCc-Cccc-----CHhHccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCC-cccccccch
Confidence 45566666666542 2111 1111344556666666554 2221110 011234555666666555 332221111
Q ss_pred HHhcCCCCcEEeccCC
Q 021374 161 LVKNCKHIIDLNLSGC 176 (313)
Q Consensus 161 ~~~~~~~L~~L~l~~~ 176 (313)
.+..+++|++|+++++
T Consensus 143 ~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 143 SFGKLNSLKSIDFSSN 158 (844)
T ss_dssp GGGTCSSCCEEEEESS
T ss_pred hHhhCCCCCEEECCCC
Confidence 2234555666665553
No 97
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.10 E-value=2.4e-12 Score=117.34 Aligned_cols=211 Identities=14% Similarity=0.142 Sum_probs=130.9
Q ss_pred cccCCcCeeeccCCccCchH------------HHHHHHHHhcC--CCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEE
Q 021374 81 PRYRHVREINLEFAQDIEDR------------HLELLKTKCLG--SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFS 146 (313)
Q Consensus 81 ~~~~~l~~L~l~~~~~~~~~------------~~~~l~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 146 (313)
..+++|+.|+++++. ++.. .........+. .+++|++|+++++...... . .....+++|++|+
T Consensus 203 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~-p-~~l~~l~~L~~L~ 279 (636)
T 4eco_A 203 MRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL-P-TFLKALPEMQLIN 279 (636)
T ss_dssp GGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSC-C-TTTTTCSSCCEEE
T ss_pred hcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccC-h-HHHhcCCCCCEEE
Confidence 357889999998864 4431 11111222244 6789999999886432211 1 2225678999999
Q ss_pred ecCCcccCHHHHHHHHhc------CCCCcEEeccCCcccchHHHHH--HHHhCCCCcEEecCCCCCCCHHHHHHHHhhCC
Q 021374 147 IYWNVRVTDIGIQHLVKN------CKHIIDLNLSGCKNLLDKSLQL--IADNYQELESLNLTRCVKLTDGGLQKILIKCS 218 (313)
Q Consensus 147 l~~~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~~~~~l~~--l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 218 (313)
++++..++...++..... +++|++|+++++ .++. ++. ....+++|+.|+++++ .+.. .++ .+..++
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~--ip~~~~l~~l~~L~~L~L~~N-~l~g-~ip-~~~~l~ 353 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKT--FPVETSLQKMKKLGMLECLYN-QLEG-KLP-AFGSEI 353 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSS--CCCHHHHTTCTTCCEEECCSC-CCEE-ECC-CCEEEE
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCc--cCchhhhccCCCCCEEeCcCC-cCcc-chh-hhCCCC
Confidence 998843776223322222 489999999986 4442 332 3445889999999884 4441 122 345678
Q ss_pred CCCEEEeCCCCCCCHHHHHHhhcCCC-CCEEecCCCCCCChHHHHHhhC--CCCCceeeccCCCCCChHHHHHHH-----
Q 021374 219 SLRSLNLYALSGFTDEAYKKISLLAH-LKFLDLCGAQNLSDEGLACIAK--CKNLVSLNLTWCVRITDVGVMAIA----- 290 (313)
Q Consensus 219 ~L~~L~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~l~----- 290 (313)
+|+.|+++++ .+. .....+..+++ |++|++++| .++. ....+.. +++|++|++++| .++......+.
T Consensus 354 ~L~~L~L~~N-~l~-~lp~~l~~l~~~L~~L~Ls~N-~l~~-lp~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~~~~~ 428 (636)
T 4eco_A 354 KLASLNLAYN-QIT-EIPANFCGFTEQVENLSFAHN-KLKY-IPNIFDAKSVSVMSAIDFSYN-EIGSVDGKNFDPLDPT 428 (636)
T ss_dssp EESEEECCSS-EEE-ECCTTSEEECTTCCEEECCSS-CCSS-CCSCCCTTCSSCEEEEECCSS-CTTTTTTCSSCTTCSS
T ss_pred CCCEEECCCC-ccc-cccHhhhhhcccCcEEEccCC-cCcc-cchhhhhcccCccCEEECcCC-cCCCcchhhhcccccc
Confidence 8999999874 333 22334567788 999999998 4552 2222333 348999999988 66543222221
Q ss_pred -HhCCCccEeecCCcc
Q 021374 291 -EGCSSLEFLSSGAEM 305 (313)
Q Consensus 291 -~~~~~L~~L~l~~~~ 305 (313)
..+++|+.|++++|.
T Consensus 429 ~~~~~~L~~L~Ls~N~ 444 (636)
T 4eco_A 429 PFKGINVSSINLSNNQ 444 (636)
T ss_dssp CCCCCCEEEEECCSSC
T ss_pred cccCCCCCEEECcCCc
Confidence 035689999998875
No 98
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.10 E-value=3.8e-09 Score=80.53 Aligned_cols=123 Identities=13% Similarity=0.136 Sum_probs=58.9
Q ss_pred HHHHhcCCCCcEEEecCCcccCHHHHHHHHh---cCCCCcEEeccCCcccchHHHHHHHH---hCCCCcEEecCCCCCCC
Q 021374 133 EIISSTCPELKVFSIYWNVRVTDIGIQHLVK---NCKHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRCVKLT 206 (313)
Q Consensus 133 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~~~ 206 (313)
..+....++|++|+|+++..+++.++..+.. ..++|++|+++++ .+++.+...+.. ..++|++|++++ +.+.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~-N~i~ 106 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVES-NFIS 106 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCS-SCCC
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcC-CcCC
Confidence 3333445555666655543455554443322 2345555666554 355544433332 234555666655 3555
Q ss_pred HHHHHHHHh---hCCCCCEEEe--CCCCCCCHHHHHHhh----cCCCCCEEecCCCCCCChH
Q 021374 207 DGGLQKILI---KCSSLRSLNL--YALSGFTDEAYKKIS----LLAHLKFLDLCGAQNLSDE 259 (313)
Q Consensus 207 ~~~~~~~~~---~~~~L~~L~l--~~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~~~~~ 259 (313)
+.+...+.. ..++|++|++ ++ ..+.+.+...+. ..++|++|++++| .+++.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n-~i~~~ 166 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFT-QQGPR 166 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCS-SHHHH
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCC-CCChH
Confidence 555443332 2345556665 33 345554433332 3455566665555 34433
No 99
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.08 E-value=3.3e-13 Score=126.94 Aligned_cols=211 Identities=17% Similarity=0.165 Sum_probs=91.4
Q ss_pred cccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHH
Q 021374 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (313)
Q Consensus 81 ~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 160 (313)
..+++|+.|+++++.....- ....+..+++|+.|+|+++ .+...... ....+++|++|++++| .+.+.....
T Consensus 45 ~~l~~L~~LdLs~n~~~~~i-----~~~~f~~L~~L~~L~Ls~N-~l~~~~p~-~~~~l~~L~~L~Ls~n-~l~~~~~~~ 116 (844)
T 3j0a_A 45 PFLEQLQLLELGSQYTPLTI-----DKEAFRNLPNLRILDLGSS-KIYFLHPD-AFQGLFHLFELRLYFC-GLSDAVLKD 116 (844)
T ss_dssp SSCCSCSEEEECTTCCCCEE-----CTTTTSSCTTCCEEECTTC-CCCEECTT-SSCSCSSCCCEECTTC-CCSSCCSTT
T ss_pred cccccCeEEeCCCCCCcccc-----CHHHhcCCCCCCEEECCCC-cCcccCHh-HccCCcccCEeeCcCC-CCCcccccC
Confidence 34566666666655221110 0111345566666666664 22222111 1244566666666665 333211111
Q ss_pred -HHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCH---HHHHHHHhhCCCCCEEEeCCCCCCCHHHH
Q 021374 161 -LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTD---GGLQKILIKCSSLRSLNLYALSGFTDEAY 236 (313)
Q Consensus 161 -~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 236 (313)
....+++|++|+++++. ++..........+++|+.|+++++ .+.. ..+..+ .. ++|+.|+++++ .+.....
T Consensus 117 ~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~~~~~~l~~l-~~-~~L~~L~L~~n-~l~~~~~ 191 (844)
T 3j0a_A 117 GYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCEHELEPL-QG-KTLSFFSLAAN-SLYSRVS 191 (844)
T ss_dssp CCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESS-CCCCCCSGGGHHH-HH-CSSCCCEECCS-BSCCCCC
T ss_pred ccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCC-cCCeeCHHHcccc-cC-CccceEECCCC-ccccccc
Confidence 12345666666666642 222111112234566666666663 3221 112211 11 56666666653 2222111
Q ss_pred HHhhcCC------CCCEEecCCCCCCChHHHHHhh---CCCCCceeeccCCC--------CCChHHHHHHHH-hCCCccE
Q 021374 237 KKISLLA------HLKFLDLCGAQNLSDEGLACIA---KCKNLVSLNLTWCV--------RITDVGVMAIAE-GCSSLEF 298 (313)
Q Consensus 237 ~~l~~~~------~L~~L~l~~~~~~~~~~~~~l~---~~~~L~~L~l~~~~--------~~~~~~~~~l~~-~~~~L~~ 298 (313)
..++.++ +|++|++++| .++......+. ..++++.+.+..+. .+.+.....+.. ..++|+.
T Consensus 192 ~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~ 270 (844)
T 3j0a_A 192 VDWGKCMNPFRNMVLEILDVSGN-GWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH 270 (844)
T ss_dssp CCCCSSSCTTTTCCBSEEBCSSC-CSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCE
T ss_pred cchhhcCCccccCceeEEecCCC-cCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccE
Confidence 1122222 2677777666 34333222222 23455666554210 111111111111 1367888
Q ss_pred eecCCcc
Q 021374 299 LSSGAEM 305 (313)
Q Consensus 299 L~l~~~~ 305 (313)
|++++|.
T Consensus 271 L~Ls~n~ 277 (844)
T 3j0a_A 271 LDLSHGF 277 (844)
T ss_dssp EECTTCC
T ss_pred EECCCCc
Confidence 8888764
No 100
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.08 E-value=1.8e-12 Score=105.83 Aligned_cols=179 Identities=18% Similarity=0.142 Sum_probs=117.4
Q ss_pred CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCC
Q 021374 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (313)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~ 193 (313)
++|+.|+++++ .++..... ....+++|++|+++++ .++..... ....+++|++|+++++ .++......+ ..+++
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~ 101 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSY-SFFSFPELQVLDLSRC-EIQTIEDG-AYQSLSHLSTLILTGN-PIQSLALGAF-SGLSS 101 (276)
T ss_dssp TTCCEEECTTC-CCCEECTT-TTTTCTTCSEEECTTC-CCCEECTT-TTTTCTTCCEEECTTC-CCCEECTTTT-TTCTT
T ss_pred CCccEEECCCC-cccccCHh-HhccccCCcEEECCCC-cCCccCHH-HccCCcCCCEEECCCC-ccCccChhhh-cCCcc
Confidence 57999999986 44433221 2256899999999988 55432211 2356899999999986 3443222222 34799
Q ss_pred CcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHH-HHHHhhcCCCCCEEecCCCCCCChH---HHHHhhCCCC
Q 021374 194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDE-AYKKISLLAHLKFLDLCGAQNLSDE---GLACIAKCKN 269 (313)
Q Consensus 194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~---~~~~l~~~~~ 269 (313)
|+.|+++++ .+..... ..+..+++|+.|+++++ .+... ....+..+++|++|++++| .++.. .+..+.+++.
T Consensus 102 L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 177 (276)
T 2z62_A 102 LQKLVAVET-NLASLEN-FPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPL 177 (276)
T ss_dssp CCEEECTTS-CCCCSTT-CCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTT
T ss_pred ccEEECCCC-CccccCc-hhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhhhccc
Confidence 999999985 4433111 11467899999999985 44332 2456778999999999999 55543 3333444555
Q ss_pred Cc-eeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374 270 LV-SLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM 305 (313)
Q Consensus 270 L~-~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 305 (313)
|. +|++++| .++......+ ...+|+.|++++|.
T Consensus 178 l~l~L~ls~n-~l~~~~~~~~--~~~~L~~L~L~~n~ 211 (276)
T 2z62_A 178 LNLSLDLSLN-PMNFIQPGAF--KEIRLKELALDTNQ 211 (276)
T ss_dssp CCEEEECCSS-CCCEECTTSS--CSCCEEEEECCSSC
T ss_pred cceeeecCCC-cccccCcccc--CCCcccEEECCCCc
Confidence 55 8999988 6654332211 23489999999874
No 101
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.07 E-value=1.3e-11 Score=92.94 Aligned_cols=15 Identities=40% Similarity=0.461 Sum_probs=7.2
Q ss_pred hhcCCCCCEEecCCC
Q 021374 239 ISLLAHLKFLDLCGA 253 (313)
Q Consensus 239 l~~~~~L~~L~l~~~ 253 (313)
+..+++|++|++++|
T Consensus 116 l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 116 LKKLECLKSLDLFNC 130 (168)
T ss_dssp GSSCSCCCEEECCSS
T ss_pred HhcCCCCCEEEeeCC
Confidence 334444555555444
No 102
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.07 E-value=1e-11 Score=93.39 Aligned_cols=132 Identities=23% Similarity=0.274 Sum_probs=85.3
Q ss_pred CCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCC
Q 021374 166 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHL 245 (313)
Q Consensus 166 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 245 (313)
++|++|+++++ .+++..++.....+++|+.|+++++ .+... ..+..+++|+.|+++++ .+.......+..+++|
T Consensus 24 ~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 24 AAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINV-GLISV---SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNL 97 (168)
T ss_dssp TSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESS-CCCCC---SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTC
T ss_pred ccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCC-CCCCh---hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCC
Confidence 45666666554 2331112222234567777777774 34432 23456778888888874 4443233344568999
Q ss_pred CEEecCCCCCCChH-HHHHhhCCCCCceeeccCCCCCChHHH--HHHHHhCCCccEeecCCcc
Q 021374 246 KFLDLCGAQNLSDE-GLACIAKCKNLVSLNLTWCVRITDVGV--MAIAEGCSSLEFLSSGAEM 305 (313)
Q Consensus 246 ~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~l~~~~~~L~~L~l~~~~ 305 (313)
++|++++| .+++. .+..+..+++|++|++++| .++.... ...+..+|+|+.|++++|.
T Consensus 98 ~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 98 THLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 99999999 56553 3356778999999999998 5554432 3456689999999998875
No 103
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.07 E-value=1.3e-11 Score=115.32 Aligned_cols=182 Identities=11% Similarity=0.061 Sum_probs=119.7
Q ss_pred cCCCCCCcEEecCCCCCCChH----------------HHHHHHh--cCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEE
Q 021374 110 LGSLQDLESLNLNGCQKISDK----------------GIEIISS--TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDL 171 (313)
Q Consensus 110 ~~~~~~L~~L~l~~~~~~~~~----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 171 (313)
+..+++|+.|+|+++ .+... .++.-.. .+++|+.|+|++| .+... ++..+..+++|+.|
T Consensus 444 l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N-~l~~~-iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 444 IQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC-PNMTQ-LPDFLYDLPELQSL 520 (876)
T ss_dssp GGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESC-TTCCS-CCGGGGGCSSCCEE
T ss_pred HhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCC-CCCcc-ChHHHhCCCCCCEE
Confidence 567889999999986 45541 1222223 7899999999988 33222 22334578999999
Q ss_pred eccCCcccchHHHHH-HH------HhCCCCcEEecCCCCCCCHHHHHH--HHhhCCCCCEEEeCCCCCCCHHHHHHhhcC
Q 021374 172 NLSGCKNLLDKSLQL-IA------DNYQELESLNLTRCVKLTDGGLQK--ILIKCSSLRSLNLYALSGFTDEAYKKISLL 242 (313)
Q Consensus 172 ~l~~~~~~~~~~l~~-l~------~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 242 (313)
+++++..++...++. +. ..+++|+.|+++++ .+. .++. .+..+++|+.|+++++ .+. ... .++.+
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~--~ip~~~~l~~L~~L~~L~Ls~N-~l~-~lp-~~~~L 594 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLE--EFPASASLQKMVKLGLLDCVHN-KVR-HLE-AFGTN 594 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCC--BCCCHHHHTTCTTCCEEECTTS-CCC-BCC-CCCTT
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCC--ccCChhhhhcCCCCCEEECCCC-Ccc-cch-hhcCC
Confidence 999964255412222 22 23469999999994 555 3444 5688999999999985 454 222 67788
Q ss_pred CCCCEEecCCCCCCChHHHHHhhCCCC-CceeeccCCCCCChHHHHHHHHhC--CCccEeecCCcc
Q 021374 243 AHLKFLDLCGAQNLSDEGLACIAKCKN-LVSLNLTWCVRITDVGVMAIAEGC--SSLEFLSSGAEM 305 (313)
Q Consensus 243 ~~L~~L~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~--~~L~~L~l~~~~ 305 (313)
++|++|++++| .++ .....+.++++ |++|++++| .++.. ...+... ++|+.|++++|.
T Consensus 595 ~~L~~L~Ls~N-~l~-~lp~~l~~l~~~L~~L~Ls~N-~L~~l--p~~~~~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 595 VKLTDLKLDYN-QIE-EIPEDFCAFTDQVEGLGFSHN-KLKYI--PNIFNAKSVYVMGSVDFSYNK 655 (876)
T ss_dssp SEESEEECCSS-CCS-CCCTTSCEECTTCCEEECCSS-CCCSC--CSCCCTTCSSCEEEEECCSSC
T ss_pred CcceEEECcCC-ccc-cchHHHhhccccCCEEECcCC-CCCcC--chhhhccccCCCCEEECcCCc
Confidence 99999999998 555 33334667788 999999988 55521 1111122 347777777764
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.07 E-value=5.9e-11 Score=96.02 Aligned_cols=142 Identities=20% Similarity=0.287 Sum_probs=86.5
Q ss_pred CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCC
Q 021374 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (313)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~ 193 (313)
++|+.|+++++ .+.... . ...+++|++|+++++ .+++... ...+++|++|+++++ .++. +..+.. ++
T Consensus 41 ~~L~~L~l~~n-~i~~l~--~-l~~l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~L~~N-~l~~--l~~~~~--~~ 107 (263)
T 1xeu_A 41 SGVQNFNGDNS-NIQSLA--G-MQFFTNLKELHLSHN-QISDLSP---LKDLTKLEELSVNRN-RLKN--LNGIPS--AC 107 (263)
T ss_dssp TTCSEEECTTS-CCCCCT--T-GGGCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCSS-CCSC--CTTCCC--SS
T ss_pred CcCcEEECcCC-Ccccch--H-HhhCCCCCEEECCCC-ccCCChh---hccCCCCCEEECCCC-ccCC--cCcccc--Cc
Confidence 78888888876 333322 1 256788888888877 5543221 456778888888875 3433 111111 67
Q ss_pred CcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCcee
Q 021374 194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSL 273 (313)
Q Consensus 194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 273 (313)
|+.|+++++ .+.+. . .+..+++|+.|+++++ .+++. ..+..+++|++|++++| .+++. ..+..+++|++|
T Consensus 108 L~~L~L~~N-~l~~~--~-~l~~l~~L~~L~Ls~N-~i~~~--~~l~~l~~L~~L~L~~N-~i~~~--~~l~~l~~L~~L 177 (263)
T 1xeu_A 108 LSRLFLDNN-ELRDT--D-SLIHLKNLEILSIRNN-KLKSI--VMLGFLSKLEVLDLHGN-EITNT--GGLTRLKKVNWI 177 (263)
T ss_dssp CCEEECCSS-CCSBS--G-GGTTCTTCCEEECTTS-CCCBC--GGGGGCTTCCEEECTTS-CCCBC--TTSTTCCCCCEE
T ss_pred ccEEEccCC-ccCCC--h-hhcCcccccEEECCCC-cCCCC--hHHccCCCCCEEECCCC-cCcch--HHhccCCCCCEE
Confidence 777777774 44431 1 2456677777777763 44432 24566777777777777 45443 345567777777
Q ss_pred eccCC
Q 021374 274 NLTWC 278 (313)
Q Consensus 274 ~l~~~ 278 (313)
++++|
T Consensus 178 ~l~~N 182 (263)
T 1xeu_A 178 DLTGQ 182 (263)
T ss_dssp EEEEE
T ss_pred eCCCC
Confidence 77766
No 105
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.07 E-value=5.6e-13 Score=106.46 Aligned_cols=202 Identities=12% Similarity=0.060 Sum_probs=128.8
Q ss_pred CCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHh
Q 021374 84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK 163 (313)
Q Consensus 84 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 163 (313)
++++.|+++++. ++.. ....+..+++|+.|+++++..++..... ....+++|++|+++++..++.... ..+.
T Consensus 31 ~~l~~L~l~~n~-l~~i-----~~~~~~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~i~~-~~f~ 102 (239)
T 2xwt_C 31 PSTQTLKLIETH-LRTI-----PSHAFSNLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTYIDP-DALK 102 (239)
T ss_dssp TTCCEEEEESCC-CSEE-----CTTTTTTCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCEECT-TSEE
T ss_pred CcccEEEEeCCc-ceEE-----CHHHccCCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeEcCH-HHhC
Confidence 478999998753 3321 1112456799999999986324332211 225689999999997225543211 1234
Q ss_pred cCCCCcEEeccCCcccchHHHHHHHHhCCCCc---EEecCCCCCCCHHHHHHHHhhCCCCC-EEEeCCCCCCCHHHHHHh
Q 021374 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELE---SLNLTRCVKLTDGGLQKILIKCSSLR-SLNLYALSGFTDEAYKKI 239 (313)
Q Consensus 164 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~---~L~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~l 239 (313)
.+++|++|+++++ .++. ++. ...+++|+ .|+++++..+.... ...+..+++|+ .|+++++ .+.......+
T Consensus 103 ~l~~L~~L~l~~n-~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~-~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~ 176 (239)
T 2xwt_C 103 ELPLLKFLGIFNT-GLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIP-VNAFQGLCNETLTLKLYNN-GFTSVQGYAF 176 (239)
T ss_dssp CCTTCCEEEEEEE-CCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEEC-TTTTTTTBSSEEEEECCSC-CCCEECTTTT
T ss_pred CCCCCCEEeCCCC-CCcc--ccc-cccccccccccEEECCCCcchhhcC-cccccchhcceeEEEcCCC-CCcccCHhhc
Confidence 6789999999986 3433 222 23467777 99999852554311 11246788999 9999874 4443222223
Q ss_pred hcCCCCCEEecCCCCCCChHHHHHhhCC-CCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374 240 SLLAHLKFLDLCGAQNLSDEGLACIAKC-KNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM 305 (313)
Q Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 305 (313)
.. ++|++|++++|..++......+.++ ++|++|+++++ .++..... .+++|+.|++.++.
T Consensus 177 ~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~----~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 177 NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK----GLEHLKELIARNTW 237 (239)
T ss_dssp TT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT----TCTTCSEEECTTC-
T ss_pred CC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh----HhccCceeeccCcc
Confidence 33 7899999999854665434456778 99999999988 55543221 57899999998765
No 106
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.06 E-value=1.1e-11 Score=99.59 Aligned_cols=156 Identities=17% Similarity=0.189 Sum_probs=94.3
Q ss_pred CCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHh
Q 021374 84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK 163 (313)
Q Consensus 84 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 163 (313)
+.++.|+++++. +..... ..+..+++|+.|+++++ .+..... .....+++|++|+++++ .++... ...+.
T Consensus 35 ~~l~~L~L~~n~-l~~~~~-----~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~ 104 (251)
T 3m19_A 35 ADTEKLDLQSTG-LATLSD-----ATFRGLTKLTWLNLDYN-QLQTLSA-GVFDDLTELGTLGLANN-QLASLP-LGVFD 104 (251)
T ss_dssp TTCCEEECTTSC-CCCCCT-----TTTTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTTS-CCCCCC-TTTTT
T ss_pred CCCCEEEccCCC-cCccCH-----hHhcCcccCCEEECCCC-cCCccCH-hHhccCCcCCEEECCCC-cccccC-hhHhc
Confidence 578888888753 322111 11356688888888875 3333221 12256788888888877 444321 12234
Q ss_pred cCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCC
Q 021374 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLA 243 (313)
Q Consensus 164 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 243 (313)
.+++|++|+++++ .++.... .....+++|+.|+++++ .+.... ...+..+++|+.|+++++ .+.......+..++
T Consensus 105 ~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~ 179 (251)
T 3m19_A 105 HLTQLDKLYLGGN-QLKSLPS-GVFDRLTKLKELRLNTN-QLQSIP-AGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLG 179 (251)
T ss_dssp TCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCT
T ss_pred ccCCCCEEEcCCC-cCCCcCh-hHhccCCcccEEECcCC-cCCccC-HHHcCcCcCCCEEECCCC-cCCccCHHHHhCCC
Confidence 5788888888885 4443111 11234788888888884 554311 112456788888888874 44433334566778
Q ss_pred CCCEEecCCCC
Q 021374 244 HLKFLDLCGAQ 254 (313)
Q Consensus 244 ~L~~L~l~~~~ 254 (313)
+|++|++++|+
T Consensus 180 ~L~~L~l~~N~ 190 (251)
T 3m19_A 180 KLQTITLFGNQ 190 (251)
T ss_dssp TCCEEECCSCC
T ss_pred CCCEEEeeCCc
Confidence 88888888884
No 107
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.06 E-value=5.7e-13 Score=106.41 Aligned_cols=181 Identities=14% Similarity=0.102 Sum_probs=120.5
Q ss_pred CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCC
Q 021374 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (313)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~ 193 (313)
++|+.|+++++ .++..... ....+++|++|+++++..++.... ..+..+++|++|++++|..++..... ....+++
T Consensus 31 ~~l~~L~l~~n-~l~~i~~~-~~~~l~~L~~L~l~~n~~l~~i~~-~~f~~l~~L~~L~l~~~n~l~~i~~~-~f~~l~~ 106 (239)
T 2xwt_C 31 PSTQTLKLIET-HLRTIPSH-AFSNLPNISRIYVSIDVTLQQLES-HSFYNLSKVTHIEIRNTRNLTYIDPD-ALKELPL 106 (239)
T ss_dssp TTCCEEEEESC-CCSEECTT-TTTTCTTCCEEEEECCSSCCEECT-TTEESCTTCCEEEEEEETTCCEECTT-SEECCTT
T ss_pred CcccEEEEeCC-cceEECHH-HccCCCCCcEEeCCCCCCcceeCH-hHcCCCcCCcEEECCCCCCeeEcCHH-HhCCCCC
Confidence 47999999986 44433221 225689999999998842443211 12256899999999974455432211 1234789
Q ss_pred CcEEecCCCCCCCHHHHHHHHhhCCCCC---EEEeCCCCCCCHHHHHHhhcCCCCC-EEecCCCCCCChHHHHHhhCCCC
Q 021374 194 LESLNLTRCVKLTDGGLQKILIKCSSLR---SLNLYALSGFTDEAYKKISLLAHLK-FLDLCGAQNLSDEGLACIAKCKN 269 (313)
Q Consensus 194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~---~L~l~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~l~~~~~ 269 (313)
|+.|+++++ .+.. ++. +..+++|+ .|+++++..+.......+..+++|+ +|++++| .++......+.. ++
T Consensus 107 L~~L~l~~n-~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~-~~ 180 (239)
T 2xwt_C 107 LKFLGIFNT-GLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNG-TK 180 (239)
T ss_dssp CCEEEEEEE-CCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTT-CE
T ss_pred CCEEeCCCC-CCcc--ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCC-CC
Confidence 999999984 4543 222 46677887 9999985356544444567889999 9999998 565322222333 79
Q ss_pred CceeeccCCCCCChHHHHHHHHhC-CCccEeecCCcc
Q 021374 270 LVSLNLTWCVRITDVGVMAIAEGC-SSLEFLSSGAEM 305 (313)
Q Consensus 270 L~~L~l~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~ 305 (313)
|++|++++|..++..... .+..+ ++|+.|++++|.
T Consensus 181 L~~L~L~~n~~l~~i~~~-~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVIDKD-AFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp EEEEECTTCTTCCEECTT-TTTTCSBCCSEEECTTCC
T ss_pred CCEEEcCCCCCcccCCHH-HhhccccCCcEEECCCCc
Confidence 999999998546643322 23357 899999999874
No 108
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.06 E-value=1.4e-10 Score=68.66 Aligned_cols=48 Identities=19% Similarity=0.273 Sum_probs=35.8
Q ss_pred ccccccCCchHHHHHHHcCCCccchhHHhhccHHHHHHHccCCCcceeec
Q 021374 14 EETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVID 63 (313)
Q Consensus 14 ~~~~~~~~~peiL~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~~l~ 63 (313)
...|. .+++|++.+||+||+.+|+++++.|||+|+.++ ..+.+|+.+|
T Consensus 6 ~~~~~-~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~-~~~~lW~~ld 53 (53)
T 1fs1_A 6 GVSWD-SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA-SDESLWQTLD 53 (53)
T ss_dssp ---CC-SSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH-TCGGGC----
T ss_pred CCCHH-HCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-CChHHHHhcC
Confidence 34563 344489999999999999999999999999874 6899999775
No 109
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.05 E-value=1.6e-12 Score=118.52 Aligned_cols=166 Identities=16% Similarity=0.141 Sum_probs=106.2
Q ss_pred cCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhC
Q 021374 138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKC 217 (313)
Q Consensus 138 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 217 (313)
.+++|+.+++..+...... .......+++++.++++.+. +... .......+++|+.|+++++..... .....+..+
T Consensus 418 ~l~~L~~l~l~~~~~~~~~-~~~~~~~l~~l~~l~ls~n~-l~~~-~~~~~~~~~~L~~L~Ls~N~~~~~-~~~~~~~~l 493 (635)
T 4g8a_A 418 GLEQLEHLDFQHSNLKQMS-EFSVFLSLRNLIYLDISHTH-TRVA-FNGIFNGLSSLEVLKMAGNSFQEN-FLPDIFTEL 493 (635)
T ss_dssp TCTTCCEEECTTSEEESTT-SSCTTTTCTTCCEEECTTSC-CEEC-CTTTTTTCTTCCEEECTTCEEGGG-EECSCCTTC
T ss_pred ccccccchhhhhccccccc-cccccccccccccccccccc-cccc-cccccccchhhhhhhhhhcccccc-cCchhhhhc
Confidence 3455566655544221111 11112345677777777642 2221 112223468899999988532211 112234677
Q ss_pred CCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhC-CCc
Q 021374 218 SSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGC-SSL 296 (313)
Q Consensus 218 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~~L 296 (313)
++|+.|+++++ .+.......+..+++|++|+|++| .++......+.++++|++|++++| .++......+. .+ ++|
T Consensus 494 ~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~-~l~~~L 569 (635)
T 4g8a_A 494 RNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQ-HFPSSL 569 (635)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTT-CCCTTC
T ss_pred cccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHH-hhhCcC
Confidence 89999999985 566555566788999999999999 666544445778999999999998 66654433333 34 589
Q ss_pred cEeecCCcccccccc
Q 021374 297 EFLSSGAEMNCCSCS 311 (313)
Q Consensus 297 ~~L~l~~~~~~~~~~ 311 (313)
+.|++++|..-|.|+
T Consensus 570 ~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 570 AFLNLTQNDFACTCE 584 (635)
T ss_dssp CEEECTTCCBCCSGG
T ss_pred CEEEeeCCCCcccCC
Confidence 999999999989886
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.04 E-value=8.8e-12 Score=105.74 Aligned_cols=91 Identities=19% Similarity=0.180 Sum_probs=39.6
Q ss_pred hCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHh---hCCCCCceeeccCCCCCChHHHHHHHHh
Q 021374 216 KCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACI---AKCKNLVSLNLTWCVRITDVGVMAIAEG 292 (313)
Q Consensus 216 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 292 (313)
.+++|+.|+++++ .+.......+..+++|++|+|++| .++......+ ..+++|++|+|++| .++......+. .
T Consensus 110 ~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~-~ 185 (361)
T 2xot_A 110 DLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQ-K 185 (361)
T ss_dssp TCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHH-H
T ss_pred CCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhh-h
Confidence 3445555555442 333222233444555555555555 3332111112 33555666666555 44433322222 3
Q ss_pred CCC--ccEeecCCccccccc
Q 021374 293 CSS--LEFLSSGAEMNCCSC 310 (313)
Q Consensus 293 ~~~--L~~L~l~~~~~~~~~ 310 (313)
++. |+.|++++|.--|.|
T Consensus 186 l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 186 LPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp SCHHHHTTEECCSSCEECCH
T ss_pred ccHhhcceEEecCCCccCCc
Confidence 443 355566655555554
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.00 E-value=2e-11 Score=96.01 Aligned_cols=132 Identities=17% Similarity=0.128 Sum_probs=71.3
Q ss_pred CCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCC
Q 021374 140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSS 219 (313)
Q Consensus 140 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 219 (313)
++|+.|+++++ .+..... ..+..+++|++|+++++ .++...... ...+++|+.|++++ +.+... ....+..+++
T Consensus 32 ~~l~~L~l~~n-~i~~i~~-~~~~~l~~L~~L~Ls~N-~i~~~~~~~-~~~l~~L~~L~Ls~-N~l~~l-~~~~f~~l~~ 105 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIPP-GAFSPYKKLRRIDLSNN-QISELAPDA-FQGLRSLNSLVLYG-NKITEL-PKSLFEGLFS 105 (220)
T ss_dssp TTCCEEECCSS-CCCEECT-TSSTTCTTCCEEECCSS-CCCEECTTT-TTTCSSCCEEECCS-SCCCCC-CTTTTTTCTT
T ss_pred cCCCEEECCCC-cCCCcCH-hHhhCCCCCCEEECCCC-cCCCcCHHH-hhCCcCCCEEECCC-CcCCcc-CHhHccCCCC
Confidence 57888888877 4443211 11234677788877774 333311111 22367777777777 344321 0112345666
Q ss_pred CCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCC
Q 021374 220 LRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCV 279 (313)
Q Consensus 220 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 279 (313)
|+.|+++++ .+.......+..+++|++|++++| .++......+..+++|++|++++|+
T Consensus 106 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 106 LQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCC
Confidence 777777663 444333344556667777777666 4443332334556666777776663
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.00 E-value=2.3e-11 Score=95.66 Aligned_cols=133 Identities=17% Similarity=0.165 Sum_probs=75.0
Q ss_pred CCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCC
Q 021374 140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSS 219 (313)
Q Consensus 140 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 219 (313)
+.++.|+++++ .++.......+..+++|++|+++++ .++......+ ..+++|+.|+++++ .+.... ...+..+++
T Consensus 32 ~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~-~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~ 106 (220)
T 2v70_A 32 QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAF-EGASGVNEILLTSN-RLENVQ-HKMFKGLES 106 (220)
T ss_dssp TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSS-CCCCCC-GGGGTTCSS
T ss_pred CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECHHHh-CCCCCCCEEECCCC-ccCccC-HhHhcCCcC
Confidence 46778888877 4443211122345777888888774 3433211112 33677777777773 443211 122456677
Q ss_pred CCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCC
Q 021374 220 LRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCV 279 (313)
Q Consensus 220 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 279 (313)
|+.|+++++ .+.......+..+++|++|++++| .++......+..+++|++|++++|+
T Consensus 107 L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 107 LKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCEEECCCC-cCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence 777777763 444333344556677777777776 4544333445566777777777663
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.00 E-value=3.5e-11 Score=95.27 Aligned_cols=132 Identities=18% Similarity=0.152 Sum_probs=81.8
Q ss_pred CCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCC
Q 021374 139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCS 218 (313)
Q Consensus 139 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 218 (313)
.++|+.|+++++ .++.... ..+..+++|++|+++++ .++.... .....+++|+.|+++++ .+... ....+..++
T Consensus 39 ~~~L~~L~Ls~n-~i~~~~~-~~~~~l~~L~~L~L~~N-~l~~i~~-~~~~~l~~L~~L~Ls~N-~l~~l-~~~~~~~l~ 112 (229)
T 3e6j_A 39 PTNAQILYLHDN-QITKLEP-GVFDSLINLKELYLGSN-QLGALPV-GVFDSLTQLTVLDLGTN-QLTVL-PSAVFDRLV 112 (229)
T ss_dssp CTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCT
T ss_pred CCCCCEEEcCCC-ccCccCH-HHhhCccCCcEEECCCC-CCCCcCh-hhcccCCCcCEEECCCC-cCCcc-ChhHhCcch
Confidence 378999999887 5543211 22345788899998885 3433111 12234788888888884 55431 112245678
Q ss_pred CCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCC
Q 021374 219 SLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCV 279 (313)
Q Consensus 219 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 279 (313)
+|+.|+++++ .+. .....+..+++|++|++++| .++......+.++++|++|++++|+
T Consensus 113 ~L~~L~Ls~N-~l~-~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 113 HLKELFMCCN-KLT-ELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TCCEEECCSS-CCC-SCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred hhCeEeccCC-ccc-ccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 8888888874 444 22234567788888888887 5554333345667888888888773
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.97 E-value=5.7e-11 Score=92.63 Aligned_cols=133 Identities=17% Similarity=0.132 Sum_probs=86.7
Q ss_pred CCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCC
Q 021374 139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCS 218 (313)
Q Consensus 139 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 218 (313)
.++|++|+++++ .++... ......+++|++|+++++ .++... ......+++|++|+++++ .+... ....+..++
T Consensus 27 ~~~l~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~ 100 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLP-NGVFDELTSLTQLYLGGN-KLQSLP-NGVFNKLTSLTYLNLSTN-QLQSL-PNGVFDKLT 100 (208)
T ss_dssp CTTCSEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCT
T ss_pred CCCCcEEEcCCC-ccCcCC-hhhhcccccCcEEECCCC-ccCccC-hhhcCCCCCcCEEECCCC-cCCcc-CHhHhcCcc
Confidence 468999999987 554321 122346789999999885 444321 112234789999999884 44421 112246778
Q ss_pred CCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCC
Q 021374 219 SLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCV 279 (313)
Q Consensus 219 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 279 (313)
+|+.|+++++ .+.......+..+++|++|++++| .++......+.++++|++|++++|+
T Consensus 101 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 101 QLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCC
Confidence 8999999874 454333334567889999999888 5554333335678889999998873
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.96 E-value=3e-10 Score=91.80 Aligned_cols=144 Identities=22% Similarity=0.266 Sum_probs=86.0
Q ss_pred ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHH
Q 021374 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 161 (313)
Q Consensus 82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 161 (313)
.+++|+.|+++++. ++... . +..+++|+.|+++++ .+..... ...+++|+.|+++++ .++.. ..+
T Consensus 39 ~l~~L~~L~l~~n~-i~~l~--~-----l~~l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~L~~N-~l~~l--~~~ 103 (263)
T 1xeu_A 39 ELSGVQNFNGDNSN-IQSLA--G-----MQFFTNLKELHLSHN-QISDLSP---LKDLTKLEELSVNRN-RLKNL--NGI 103 (263)
T ss_dssp HHTTCSEEECTTSC-CCCCT--T-----GGGCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCSS-CCSCC--TTC
T ss_pred hcCcCcEEECcCCC-cccch--H-----HhhCCCCCEEECCCC-ccCCChh---hccCCCCCEEECCCC-ccCCc--Ccc
Confidence 45777788877653 33211 1 345677888888775 3333221 356778888888777 44331 111
Q ss_pred HhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhc
Q 021374 162 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISL 241 (313)
Q Consensus 162 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 241 (313)
.. ++|+.|+++++ .+++. .. ...+++|+.|++++ +.+.+. . .+..+++|+.|+++++ .+.+. ..+..
T Consensus 104 -~~-~~L~~L~L~~N-~l~~~--~~-l~~l~~L~~L~Ls~-N~i~~~--~-~l~~l~~L~~L~L~~N-~i~~~--~~l~~ 170 (263)
T 1xeu_A 104 -PS-ACLSRLFLDNN-ELRDT--DS-LIHLKNLEILSIRN-NKLKSI--V-MLGFLSKLEVLDLHGN-EITNT--GGLTR 170 (263)
T ss_dssp -CC-SSCCEEECCSS-CCSBS--GG-GTTCTTCCEEECTT-SCCCBC--G-GGGGCTTCCEEECTTS-CCCBC--TTSTT
T ss_pred -cc-CcccEEEccCC-ccCCC--hh-hcCcccccEEECCC-CcCCCC--h-HHccCCCCCEEECCCC-cCcch--HHhcc
Confidence 11 67888888775 34432 22 23467788888877 355542 2 2466778888888774 44443 44567
Q ss_pred CCCCCEEecCCC
Q 021374 242 LAHLKFLDLCGA 253 (313)
Q Consensus 242 ~~~L~~L~l~~~ 253 (313)
+++|++|++++|
T Consensus 171 l~~L~~L~l~~N 182 (263)
T 1xeu_A 171 LKKVNWIDLTGQ 182 (263)
T ss_dssp CCCCCEEEEEEE
T ss_pred CCCCCEEeCCCC
Confidence 778888888777
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.92 E-value=2.4e-11 Score=108.83 Aligned_cols=124 Identities=21% Similarity=0.229 Sum_probs=85.4
Q ss_pred CCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCC
Q 021374 166 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHL 245 (313)
Q Consensus 166 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 245 (313)
..|+.|+++++ .++. ++. ...+++|+.|+++++ .+. .++..+..+++|+.|+++++ .++.. ..++.+++|
T Consensus 441 ~~L~~L~Ls~n-~l~~--lp~-~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N-~l~~l--p~l~~l~~L 510 (567)
T 1dce_A 441 ADVRVLHLAHK-DLTV--LCH-LEQLLLVTHLDLSHN-RLR--ALPPALAALRCLEVLQASDN-ALENV--DGVANLPRL 510 (567)
T ss_dssp TTCSEEECTTS-CCSS--CCC-GGGGTTCCEEECCSS-CCC--CCCGGGGGCTTCCEEECCSS-CCCCC--GGGTTCSSC
T ss_pred cCceEEEecCC-CCCC--CcC-ccccccCcEeecCcc-ccc--ccchhhhcCCCCCEEECCCC-CCCCC--cccCCCCCC
Confidence 36888888885 4544 333 345788999999884 555 23334577888999999884 45432 267788899
Q ss_pred CEEecCCCCCCChHH-HHHhhCCCCCceeeccCCCCCChH--HHHHHHHhCCCccEeec
Q 021374 246 KFLDLCGAQNLSDEG-LACIAKCKNLVSLNLTWCVRITDV--GVMAIAEGCSSLEFLSS 301 (313)
Q Consensus 246 ~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~--~~~~l~~~~~~L~~L~l 301 (313)
++|++++| .++... ...+.++++|++|++++| .++.. ....+...+|+|+.|++
T Consensus 511 ~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 511 QELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 99999888 565543 455778889999999888 45433 23445556888888864
No 117
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.89 E-value=5.8e-11 Score=92.58 Aligned_cols=149 Identities=16% Similarity=0.134 Sum_probs=98.4
Q ss_pred CCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCC
Q 021374 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ 192 (313)
Q Consensus 113 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~ 192 (313)
.++|++|+++++ .++.... .....+++|++|+++++ .++.. .......+++|++|+++++ .++.... .....++
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~ 100 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLPN-GVFDELTSLTQLYLGGN-KLQSL-PNGVFNKLTSLTYLNLSTN-QLQSLPN-GVFDKLT 100 (208)
T ss_dssp CTTCSEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCT
T ss_pred CCCCcEEEcCCC-ccCcCCh-hhhcccccCcEEECCCC-ccCcc-ChhhcCCCCCcCEEECCCC-cCCccCH-hHhcCcc
Confidence 468999999986 4433221 22356899999999987 55432 1122346789999999986 4443211 1223578
Q ss_pred CCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCce
Q 021374 193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVS 272 (313)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 272 (313)
+|+.|+++++ .+.... ...+..+++|+.|+++++ .+.......+..+++|++|++++|+.. +.+++|++
T Consensus 101 ~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~ 169 (208)
T 2o6s_A 101 QLKELALNTN-QLQSLP-DGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRY 169 (208)
T ss_dssp TCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBC--------CCTTTTHH
T ss_pred CCCEEEcCCC-cCcccC-HhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCee--------cCCCCHHH
Confidence 9999999984 554311 123467899999999884 454433344667899999999998422 35677888
Q ss_pred eeccCC
Q 021374 273 LNLTWC 278 (313)
Q Consensus 273 L~l~~~ 278 (313)
|++..+
T Consensus 170 L~~~~n 175 (208)
T 2o6s_A 170 LSEWIN 175 (208)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877665
No 118
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.86 E-value=4.8e-10 Score=84.86 Aligned_cols=129 Identities=12% Similarity=0.112 Sum_probs=70.1
Q ss_pred CCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCC
Q 021374 139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCS 218 (313)
Q Consensus 139 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 218 (313)
+++|+.|+++++ .++. +..+....++|+.|+++++ .++.. ..+ ..+++|+.|+++++ .+... ...++..++
T Consensus 18 ~~~L~~L~l~~n-~l~~--i~~~~~~~~~L~~L~Ls~N-~l~~~--~~l-~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~ 88 (176)
T 1a9n_A 18 AVRDRELDLRGY-KIPV--IENLGATLDQFDAIDFSDN-EIRKL--DGF-PLLRRLKTLLVNNN-RICRI-GEGLDQALP 88 (176)
T ss_dssp TTSCEEEECTTS-CCCS--CCCGGGGTTCCSEEECCSS-CCCEE--CCC-CCCSSCCEEECCSS-CCCEE-CSCHHHHCT
T ss_pred cCCceEEEeeCC-CCch--hHHhhhcCCCCCEEECCCC-CCCcc--ccc-ccCCCCCEEECCCC-ccccc-CcchhhcCC
Confidence 567888888777 4442 2233333457777777775 34432 112 23567777777773 44421 112235667
Q ss_pred CCCEEEeCCCCCCCHH-HHHHhhcCCCCCEEecCCCCCCChHH---HHHhhCCCCCceeeccCC
Q 021374 219 SLRSLNLYALSGFTDE-AYKKISLLAHLKFLDLCGAQNLSDEG---LACIAKCKNLVSLNLTWC 278 (313)
Q Consensus 219 ~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~---~~~l~~~~~L~~L~l~~~ 278 (313)
+|+.|+++++ .+... .+..+..+++|++|++++|+ ++... ...+..+++|+.|+++++
T Consensus 89 ~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 89 DLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp TCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence 7777777664 33321 12345566677777777663 33211 113455677777777665
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.80 E-value=2.5e-10 Score=89.73 Aligned_cols=134 Identities=23% Similarity=0.234 Sum_probs=70.6
Q ss_pred CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCC
Q 021374 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (313)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~ 193 (313)
..++.|+++++ .++..........+++|++|+++++ .++.... ..+..+++|++|+++++ .++..... ....+++
T Consensus 32 ~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~ 106 (220)
T 2v70_A 32 QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEE-GAFEGASGVNEILLTSN-RLENVQHK-MFKGLES 106 (220)
T ss_dssp TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSS-CCCCCCGG-GGTTCSS
T ss_pred CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECH-HHhCCCCCCCEEECCCC-ccCccCHh-HhcCCcC
Confidence 45667777764 3332211112255677777777766 4433211 11235677777777764 33321111 1234677
Q ss_pred CcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCC
Q 021374 194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQN 255 (313)
Q Consensus 194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 255 (313)
|+.|+++++ .+.... ...+..+++|+.|+++++ .+.......+..+++|++|++++|+.
T Consensus 107 L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 107 LKTLMLRSN-RITCVG-NDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCEEECTTS-CCCCBC-TTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCEEECCCC-cCCeEC-HhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCC
Confidence 777777763 443211 112345677777777763 44433334455667777777777743
No 120
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.77 E-value=1.2e-09 Score=84.03 Aligned_cols=107 Identities=17% Similarity=0.193 Sum_probs=56.3
Q ss_pred CCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCC
Q 021374 166 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHL 245 (313)
Q Consensus 166 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 245 (313)
++|++|++++. .++. ++.....+++|+.|++++ +.+.... ...+.++++|+.|+++++ .+.......+..+++|
T Consensus 31 ~~l~~L~L~~n-~i~~--ip~~~~~l~~L~~L~Ls~-N~i~~i~-~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L 104 (193)
T 2wfh_A 31 RDVTELYLDGN-QFTL--VPKELSNYKHLTLIDLSN-NRISTLS-NQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSL 104 (193)
T ss_dssp TTCCEEECCSS-CCCS--CCGGGGGCTTCCEEECCS-SCCCCCC-TTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTC
T ss_pred CCCCEEECCCC-cCch--hHHHhhcccCCCEEECCC-CcCCEeC-HhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCC
Confidence 46777777764 3332 112223466777777776 3443211 112345566666666662 3443333345556666
Q ss_pred CEEecCCCCCCChHHHHHhhCCCCCceeeccCCC
Q 021374 246 KFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCV 279 (313)
Q Consensus 246 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 279 (313)
++|++++| .++......+..+++|++|++++|+
T Consensus 105 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 105 RLLSLHGN-DISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCC-CCCeeChhhhhcCccccEEEeCCCC
Confidence 66666666 4443222234456666666666653
No 121
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.76 E-value=5.3e-09 Score=94.46 Aligned_cols=75 Identities=21% Similarity=0.115 Sum_probs=37.6
Q ss_pred CCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCcc
Q 021374 218 SSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLE 297 (313)
Q Consensus 218 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 297 (313)
++|+.|+++++ .++... ..+++|++|++++| .++.-. . .+++|++|++++| .++.. ...+..+++|+
T Consensus 221 ~~L~~L~Ls~N-~L~~lp----~~l~~L~~L~Ls~N-~L~~lp--~--~~~~L~~L~Ls~N-~L~~l--p~~l~~l~~L~ 287 (622)
T 3g06_A 221 SGLKELIVSGN-RLTSLP----VLPSELKELMVSGN-RLTSLP--M--LPSGLLSLSVYRN-QLTRL--PESLIHLSSET 287 (622)
T ss_dssp TTCCEEECCSS-CCSCCC----CCCTTCCEEECCSS-CCSCCC--C--CCTTCCEEECCSS-CCCSC--CGGGGGSCTTC
T ss_pred CCCCEEEccCC-ccCcCC----CCCCcCcEEECCCC-CCCcCC--c--ccccCcEEeCCCC-CCCcC--CHHHhhccccC
Confidence 55666666553 232210 23456666666666 343211 0 3456666666666 44422 11233566666
Q ss_pred EeecCCcc
Q 021374 298 FLSSGAEM 305 (313)
Q Consensus 298 ~L~l~~~~ 305 (313)
.|++++|.
T Consensus 288 ~L~L~~N~ 295 (622)
T 3g06_A 288 TVNLEGNP 295 (622)
T ss_dssp EEECCSCC
T ss_pred EEEecCCC
Confidence 66666653
No 122
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.75 E-value=5.7e-10 Score=87.68 Aligned_cols=136 Identities=15% Similarity=0.167 Sum_probs=72.1
Q ss_pred CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCC
Q 021374 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (313)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~ 193 (313)
++|+.|+++++ .+...... ....+++|+.|+|+++ .++..... .+..+++|++|+++++ .++... ......+++
T Consensus 32 ~~l~~L~l~~n-~i~~i~~~-~~~~l~~L~~L~Ls~N-~i~~~~~~-~~~~l~~L~~L~Ls~N-~l~~l~-~~~f~~l~~ 105 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIPPG-AFSPYKKLRRIDLSNN-QISELAPD-AFQGLRSLNSLVLYGN-KITELP-KSLFEGLFS 105 (220)
T ss_dssp TTCCEEECCSS-CCCEECTT-SSTTCTTCCEEECCSS-CCCEECTT-TTTTCSSCCEEECCSS-CCCCCC-TTTTTTCTT
T ss_pred cCCCEEECCCC-cCCCcCHh-HhhCCCCCCEEECCCC-cCCCcCHH-HhhCCcCCCEEECCCC-cCCccC-HhHccCCCC
Confidence 46777777764 33322111 1244667777777766 44332111 1245677777777764 333211 111234677
Q ss_pred CcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCCh
Q 021374 194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSD 258 (313)
Q Consensus 194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 258 (313)
|+.|+++++ .+.... ...+..+++|+.|+++++ .+.......+..+++|++|++++|+...+
T Consensus 106 L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 106 LQLLLLNAN-KINCLR-VDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCEEECCCC-CCCEeC-HHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 777777773 443311 112355677777777763 34333333455667777777777754333
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.74 E-value=5.3e-10 Score=85.91 Aligned_cols=109 Identities=24% Similarity=0.168 Sum_probs=68.1
Q ss_pred CCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCC
Q 021374 166 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHL 245 (313)
Q Consensus 166 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 245 (313)
++|++|+++++ .++..........+++|+.|++++ +.+... ....+..+++|+.|++++ ..+.......+..+++|
T Consensus 29 ~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~-~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L 104 (192)
T 1w8a_A 29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKR-NQLTGI-EPNAFEGASHIQELQLGE-NKIKEISNKMFLGLHQL 104 (192)
T ss_dssp TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCS-SCCCCB-CTTTTTTCTTCCEEECCS-CCCCEECSSSSTTCTTC
T ss_pred CCCCEEECCCC-cCCccCCccccccCCCCCEEECCC-CCCCCc-CHhHcCCcccCCEEECCC-CcCCccCHHHhcCCCCC
Confidence 47888888875 343321111224578888888888 355431 112345677888888887 35554434445667888
Q ss_pred CEEecCCCCCCChHHHHHhhCCCCCceeeccCCC
Q 021374 246 KFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCV 279 (313)
Q Consensus 246 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 279 (313)
++|++++| .++......+..+++|++|++++|+
T Consensus 105 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 105 KTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CEEECCSS-CCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 88888887 5554433445667888888888773
No 124
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.72 E-value=8.9e-10 Score=100.32 Aligned_cols=157 Identities=17% Similarity=0.090 Sum_probs=103.3
Q ss_pred CCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCC
Q 021374 140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSS 219 (313)
Q Consensus 140 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 219 (313)
+++++|+|+++ .++.... ..+..+++|++|+++++ .++...... ...+++|++|+++++ .+.... ...+.++++
T Consensus 52 ~~~~~LdLs~N-~i~~l~~-~~f~~l~~L~~L~Ls~N-~i~~i~~~~-f~~L~~L~~L~Ls~N-~l~~l~-~~~f~~L~~ 125 (635)
T 4g8a_A 52 FSTKNLDLSFN-PLRHLGS-YSFFSFPELQVLDLSRC-EIQTIEDGA-YQSLSHLSTLILTGN-PIQSLA-LGAFSGLSS 125 (635)
T ss_dssp TTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECTTC-CCCEECTTT-TTTCTTCCEEECTTC-CCCEEC-GGGGTTCTT
T ss_pred cCCCEEEeeCC-CCCCCCH-HHHhCCCCCCEEECCCC-cCCCcChhH-hcCCCCCCEEEccCC-cCCCCC-HHHhcCCCC
Confidence 47999999988 6654221 12356899999999996 444321112 235899999999994 555421 123578899
Q ss_pred CCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChH-HHHHhhCCCCCceeeccCCCCCCh---HHHHHHHHhCCC
Q 021374 220 LRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDE-GLACIAKCKNLVSLNLTWCVRITD---VGVMAIAEGCSS 295 (313)
Q Consensus 220 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~---~~~~~l~~~~~~ 295 (313)
|++|+++++ .+.......++.+++|++|++++| .++.. ....+..+++|++|++++| .++. ..+..+......
T Consensus 126 L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~~l~~~ 202 (635)
T 4g8a_A 126 LQKLVAVET-NLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLL 202 (635)
T ss_dssp CCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTC
T ss_pred CCEEECCCC-cCCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCc-cccccccccccchhhhhhh
Confidence 999999985 454433334678899999999998 44432 2234667899999999998 5543 334444432234
Q ss_pred ccEeecCCcc
Q 021374 296 LEFLSSGAEM 305 (313)
Q Consensus 296 L~~L~l~~~~ 305 (313)
+..++++.+.
T Consensus 203 ~~~~~ls~n~ 212 (635)
T 4g8a_A 203 NLSLDLSLNP 212 (635)
T ss_dssp CCEEECTTCC
T ss_pred hhhhhcccCc
Confidence 4566666553
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.72 E-value=2.8e-09 Score=80.62 Aligned_cols=131 Identities=18% Similarity=0.153 Sum_probs=63.9
Q ss_pred CCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhC
Q 021374 112 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY 191 (313)
Q Consensus 112 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 191 (313)
.+.+|+.|+++++ .++.. ..+....++|+.|+++++ .++.. .....+++|++|+++++ .++... ..+...+
T Consensus 17 ~~~~L~~L~l~~n-~l~~i--~~~~~~~~~L~~L~Ls~N-~l~~~---~~l~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l 87 (176)
T 1a9n_A 17 NAVRDRELDLRGY-KIPVI--ENLGATLDQFDAIDFSDN-EIRKL---DGFPLLRRLKTLLVNNN-RICRIG-EGLDQAL 87 (176)
T ss_dssp CTTSCEEEECTTS-CCCSC--CCGGGGTTCCSEEECCSS-CCCEE---CCCCCCSSCCEEECCSS-CCCEEC-SCHHHHC
T ss_pred CcCCceEEEeeCC-CCchh--HHhhhcCCCCCEEECCCC-CCCcc---cccccCCCCCEEECCCC-cccccC-cchhhcC
Confidence 4456666666664 33321 223233446666666666 44432 11234566666666664 333211 1122346
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCH---HHHHHhhcCCCCCEEecCCC
Q 021374 192 QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTD---EAYKKISLLAHLKFLDLCGA 253 (313)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~~~~L~~L~l~~~ 253 (313)
++|+.|+++++ .+........+..+++|+.|+++++ .+.. .....+..+++|++|+++++
T Consensus 88 ~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 88 PDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp TTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 66666666663 4432111012345666666666653 2221 11123456666666666665
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.69 E-value=4e-10 Score=100.92 Aligned_cols=178 Identities=17% Similarity=0.160 Sum_probs=113.5
Q ss_pred CCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCccc-----------CHHHHHHHHhcCCCCcEEe-ccCCccc
Q 021374 112 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRV-----------TDIGIQHLVKNCKHIIDLN-LSGCKNL 179 (313)
Q Consensus 112 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----------~~~~~~~~~~~~~~L~~L~-l~~~~~~ 179 (313)
..++|+.|+|+++ .+ ..++.-.+.+++|+.|++.++..+ ...........+++|+.|+ ++. ..+
T Consensus 347 ~~~~L~~L~Ls~n-~L--~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~-n~~ 422 (567)
T 1dce_A 347 TDEQLFRCELSVE-KS--TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA-AYL 422 (567)
T ss_dssp TTTTSSSCCCCHH-HH--HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH-HHH
T ss_pred cCccceeccCChh-hH--HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhh-ccc
Confidence 3466777776653 22 123333356677777776543100 0011223334566777777 332 111
Q ss_pred ch--------HHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecC
Q 021374 180 LD--------KSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLC 251 (313)
Q Consensus 180 ~~--------~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 251 (313)
.+ ..+..+. ...|+.|+++++ .++. ++. +..+++|+.|+++++ .++ ..+..++.+++|++|+++
T Consensus 423 ~~L~~l~l~~n~i~~l~--~~~L~~L~Ls~n-~l~~--lp~-~~~l~~L~~L~Ls~N-~l~-~lp~~~~~l~~L~~L~Ls 494 (567)
T 1dce_A 423 DDLRSKFLLENSVLKME--YADVRVLHLAHK-DLTV--LCH-LEQLLLVTHLDLSHN-RLR-ALPPALAALRCLEVLQAS 494 (567)
T ss_dssp HHHHHHHHHHHHHHHHH--HTTCSEEECTTS-CCSS--CCC-GGGGTTCCEEECCSS-CCC-CCCGGGGGCTTCCEEECC
T ss_pred chhhhhhhhcccccccC--ccCceEEEecCC-CCCC--CcC-ccccccCcEeecCcc-ccc-ccchhhhcCCCCCEEECC
Confidence 11 1222222 247999999994 6654 344 678899999999984 555 334567899999999999
Q ss_pred CCCCCChHHHHHhhCCCCCceeeccCCCCCChHH-HHHHHHhCCCccEeecCCccc
Q 021374 252 GAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVG-VMAIAEGCSSLEFLSSGAEMN 306 (313)
Q Consensus 252 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~~L~~L~l~~~~~ 306 (313)
+| .++. ++.+.++++|++|++++| .++... ... +..+++|+.|++++|.-
T Consensus 495 ~N-~l~~--lp~l~~l~~L~~L~Ls~N-~l~~~~~p~~-l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 495 DN-ALEN--VDGVANLPRLQELLLCNN-RLQQSAAIQP-LVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp SS-CCCC--CGGGTTCSSCCEEECCSS-CCCSSSTTGG-GGGCTTCCEEECTTSGG
T ss_pred CC-CCCC--CcccCCCCCCcEEECCCC-CCCCCCCcHH-HhcCCCCCEEEecCCcC
Confidence 99 5665 236888999999999998 776553 333 34799999999999863
No 127
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.69 E-value=8.7e-10 Score=85.15 Aligned_cols=105 Identities=21% Similarity=0.224 Sum_probs=51.6
Q ss_pred hcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhh
Q 021374 137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIK 216 (313)
Q Consensus 137 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 216 (313)
..+++|++|+++++ .++. +. ....+++|+.|+++++ .++. ++.....+++|+.|+++++ .+.. +.. +..
T Consensus 45 ~~l~~L~~L~ls~n-~l~~--l~-~~~~l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~L~L~~N-~l~~--l~~-~~~ 113 (198)
T 1ds9_A 45 STLKACKHLALSTN-NIEK--IS-SLSGMENLRILSLGRN-LIKK--IENLDAVADTLEELWISYN-QIAS--LSG-IEK 113 (198)
T ss_dssp HHTTTCSEEECSEE-EESC--CC-CHHHHTTCCEEEEEEE-EECS--CSSHHHHHHHCSEEEEEEE-ECCC--HHH-HHH
T ss_pred hcCCCCCEEECCCC-CCcc--cc-ccccCCCCCEEECCCC-Cccc--ccchhhcCCcCCEEECcCC-cCCc--CCc-ccc
Confidence 55677777777766 3333 11 2234566777777664 2332 2222223455666666663 3333 221 344
Q ss_pred CCCCCEEEeCCCCCCCH-HHHHHhhcCCCCCEEecCCC
Q 021374 217 CSSLRSLNLYALSGFTD-EAYKKISLLAHLKFLDLCGA 253 (313)
Q Consensus 217 ~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~ 253 (313)
+++|+.|+++++ .+.. .....+..+++|++|++++|
T Consensus 114 l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 114 LVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred CCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCC
Confidence 555555555553 2322 12234445555555555555
No 128
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.68 E-value=1.8e-09 Score=85.36 Aligned_cols=132 Identities=17% Similarity=0.136 Sum_probs=82.8
Q ss_pred CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCC
Q 021374 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (313)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~ 193 (313)
++|+.|+++++ .+..... .....+++|+.|+|+++ .+.... ...+..+++|+.|+++++ .++... ......+++
T Consensus 40 ~~L~~L~Ls~n-~i~~~~~-~~~~~l~~L~~L~L~~N-~l~~i~-~~~~~~l~~L~~L~Ls~N-~l~~l~-~~~~~~l~~ 113 (229)
T 3e6j_A 40 TNAQILYLHDN-QITKLEP-GVFDSLINLKELYLGSN-QLGALP-VGVFDSLTQLTVLDLGTN-QLTVLP-SAVFDRLVH 113 (229)
T ss_dssp TTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTT
T ss_pred CCCCEEEcCCC-ccCccCH-HHhhCccCCcEEECCCC-CCCCcC-hhhcccCCCcCEEECCCC-cCCccC-hhHhCcchh
Confidence 67888888885 3333211 12256788889988887 443221 122345788888888885 444321 112234788
Q ss_pred CcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCC
Q 021374 194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQN 255 (313)
Q Consensus 194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 255 (313)
|+.|++++ +.+.. +...+..+++|+.|+++++ .+.......+..+++|++|++++|+.
T Consensus 114 L~~L~Ls~-N~l~~--lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 114 LKELFMCC-NKLTE--LPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCEEECCS-SCCCS--CCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred hCeEeccC-Ccccc--cCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 88999888 45552 3233467788899988874 45433334466788888998888853
No 129
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.65 E-value=6e-09 Score=93.04 Aligned_cols=167 Identities=14% Similarity=0.068 Sum_probs=87.8
Q ss_pred cCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHH
Q 021374 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV 162 (313)
Q Consensus 83 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 162 (313)
+++|+.|+++++. ++.-. ..+++|+.|+++++ .++. +..+ ..+|++|+++++ .++. +..
T Consensus 79 ~~~L~~L~Ls~N~-l~~ip---------~~l~~L~~L~Ls~N-~l~~--ip~l---~~~L~~L~Ls~N-~l~~--lp~-- 137 (571)
T 3cvr_A 79 PPQITVLEITQNA-LISLP---------ELPASLEYLDACDN-RLST--LPEL---PASLKHLDVDNN-QLTM--LPE-- 137 (571)
T ss_dssp CTTCSEEECCSSC-CSCCC---------CCCTTCCEEECCSS-CCSC--CCCC---CTTCCEEECCSS-CCSC--CCC--
T ss_pred cCCCCEEECcCCC-Ccccc---------cccCCCCEEEccCC-CCCC--cchh---hcCCCEEECCCC-cCCC--CCC--
Confidence 3567777776643 32110 23467777777765 3332 1111 127777777766 4433 111
Q ss_pred hcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhc-
Q 021374 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISL- 241 (313)
Q Consensus 163 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~- 241 (313)
.+++|+.|+++++ .++. ++. .+++|+.|+++++ .++. ++. +. ++|+.|+++++ .++... . +..
T Consensus 138 -~l~~L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N-~L~~--lp~-l~--~~L~~L~Ls~N-~L~~lp-~-~~~~ 201 (571)
T 3cvr_A 138 -LPALLEYINADNN-QLTM--LPE---LPTSLEVLSVRNN-QLTF--LPE-LP--ESLEALDVSTN-LLESLP-A-VPVR 201 (571)
T ss_dssp -CCTTCCEEECCSS-CCSC--CCC---CCTTCCEEECCSS-CCSC--CCC-CC--TTCCEEECCSS-CCSSCC-C-CC--
T ss_pred -cCccccEEeCCCC-ccCc--CCC---cCCCcCEEECCCC-CCCC--cch-hh--CCCCEEECcCC-CCCchh-h-HHHh
Confidence 4567777777774 3432 111 3567777777773 4443 222 11 67777777764 333110 1 111
Q ss_pred ----CCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHH
Q 021374 242 ----LAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAI 289 (313)
Q Consensus 242 ----~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l 289 (313)
.+.|++|++++| .++. ....+.++++|++|++++| .++......+
T Consensus 202 L~~~~~~L~~L~Ls~N-~l~~-lp~~l~~l~~L~~L~L~~N-~l~~~~p~~l 250 (571)
T 3cvr_A 202 NHHSEETEIFFRCREN-RITH-IPENILSLDPTCTIILEDN-PLSSRIRESL 250 (571)
T ss_dssp ------CCEEEECCSS-CCCC-CCGGGGGSCTTEEEECCSS-SCCHHHHHHH
T ss_pred hhcccccceEEecCCC-ccee-cCHHHhcCCCCCEEEeeCC-cCCCcCHHHH
Confidence 122377777777 4543 1223455777888888777 6666554444
No 130
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.64 E-value=1.6e-09 Score=91.87 Aligned_cols=111 Identities=20% Similarity=0.148 Sum_probs=74.7
Q ss_pred hCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCC
Q 021374 190 NYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKN 269 (313)
Q Consensus 190 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 269 (313)
.+++|+.|++++ +.+.... ...+..+++|+.|+++++ .+.......+..+++|++|+|++| .++......+.++++
T Consensus 62 ~l~~L~~L~L~~-N~i~~i~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~ 137 (361)
T 2xot_A 62 RLTNLHSLLLSH-NHLNFIS-SEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQ 137 (361)
T ss_dssp CCTTCCEEECCS-SCCCEEC-TTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTT
T ss_pred cccccCEEECCC-CcCCccC-hhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCccc
Confidence 356777777776 3444311 112456788888888873 455443445678899999999999 666544455778999
Q ss_pred CceeeccCCCCCChHHHHHH--HHhCCCccEeecCCcc
Q 021374 270 LVSLNLTWCVRITDVGVMAI--AEGCSSLEFLSSGAEM 305 (313)
Q Consensus 270 L~~L~l~~~~~~~~~~~~~l--~~~~~~L~~L~l~~~~ 305 (313)
|++|+|++| .++......+ ...+++|+.|+|++|.
T Consensus 138 L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 138 LQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 999999998 6665332222 1358999999999874
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.63 E-value=2.2e-09 Score=81.25 Aligned_cols=109 Identities=17% Similarity=0.107 Sum_probs=69.7
Q ss_pred CCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCC
Q 021374 165 CKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAH 244 (313)
Q Consensus 165 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 244 (313)
.++|++|+++++ .++... ......+++|+.|+++++ .+... ....+..+++|+.|+++++ .++......+..+++
T Consensus 27 ~~~l~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~ 101 (177)
T 2o6r_A 27 PSSATRLELESN-KLQSLP-HGVFDKLTQLTKLSLSQN-QIQSL-PDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQ 101 (177)
T ss_dssp CTTCSEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred CCCCcEEEeCCC-cccEeC-HHHhcCcccccEEECCCC-cceEe-ChhHccCCCccCEEECCCC-CccccCHHHhhCCcc
Confidence 368899999885 344311 112234788999999884 55431 1122456788888888874 454333334567788
Q ss_pred CCEEecCCCCCCChHHHHHhhCCCCCceeeccCCC
Q 021374 245 LKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCV 279 (313)
Q Consensus 245 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 279 (313)
|++|++++| .++......+.++++|++|++++|+
T Consensus 102 L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 102 LKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 888888888 5554333335667888888888883
No 132
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.59 E-value=5.7e-08 Score=87.75 Aligned_cols=125 Identities=17% Similarity=0.137 Sum_probs=79.5
Q ss_pred CCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCC
Q 021374 140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSS 219 (313)
Q Consensus 140 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 219 (313)
++|+.|+++++ .++. + ....++|+.|.++++ .++. +...+++|+.|+++++ .+.. +. ..+++
T Consensus 181 ~~L~~L~Ls~N-~l~~--l---~~~~~~L~~L~L~~N-~l~~-----l~~~~~~L~~L~Ls~N-~L~~--lp---~~l~~ 242 (622)
T 3g06_A 181 SGLQELSVSDN-QLAS--L---PTLPSELYKLWAYNN-RLTS-----LPALPSGLKELIVSGN-RLTS--LP---VLPSE 242 (622)
T ss_dssp TTCCEEECCSS-CCSC--C---CCCCTTCCEEECCSS-CCSS-----CCCCCTTCCEEECCSS-CCSC--CC---CCCTT
T ss_pred CCCcEEECCCC-CCCC--C---CCccchhhEEECcCC-cccc-----cCCCCCCCCEEEccCC-ccCc--CC---CCCCc
Confidence 55566666555 3332 1 112356666666664 2332 1123478999999884 5553 22 56789
Q ss_pred CCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHH
Q 021374 220 LRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIA 290 (313)
Q Consensus 220 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~ 290 (313)
|+.|+++++ .++.... .+++|++|++++| .++. ....+.++++|+.|++++| .++......+.
T Consensus 243 L~~L~Ls~N-~L~~lp~----~~~~L~~L~Ls~N-~L~~-lp~~l~~l~~L~~L~L~~N-~l~~~~~~~l~ 305 (622)
T 3g06_A 243 LKELMVSGN-RLTSLPM----LPSGLLSLSVYRN-QLTR-LPESLIHLSSETTVNLEGN-PLSERTLQALR 305 (622)
T ss_dssp CCEEECCSS-CCSCCCC----CCTTCCEEECCSS-CCCS-CCGGGGGSCTTCEEECCSC-CCCHHHHHHHH
T ss_pred CcEEECCCC-CCCcCCc----ccccCcEEeCCCC-CCCc-CCHHHhhccccCEEEecCC-CCCCcCHHHHH
Confidence 999999985 4442111 5789999999999 5663 2345778999999999999 77776555443
No 133
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.58 E-value=7.4e-11 Score=99.62 Aligned_cols=160 Identities=14% Similarity=0.108 Sum_probs=80.9
Q ss_pred hcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhh
Q 021374 137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIK 216 (313)
Q Consensus 137 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 216 (313)
..+++|++|+++++ .+....-.. .....++..|++.++..+.......+......++.|++++ +.+.. +..-...
T Consensus 101 ~~l~~L~~L~l~~n-~l~~~~~~~-~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~--i~~~~f~ 175 (350)
T 4ay9_X 101 QNLPNLQYLLISNT-GIKHLPDVH-KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQE--IHNSAFN 175 (350)
T ss_dssp CCCTTCCEEEEEEE-CCSSCCCCT-TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCE--ECTTSST
T ss_pred hhcccccccccccc-ccccCCchh-hcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccC--CChhhcc
Confidence 34566666666655 322110000 0122345555554433332211111111123577777777 34442 1111123
Q ss_pred CCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCc
Q 021374 217 CSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSL 296 (313)
Q Consensus 217 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 296 (313)
..+|+.|.+.++..+.......+..+++|++|++++| .++.-.. ..+.+|+.|.+.++..++... . ...+++|
T Consensus 176 ~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~---~~~~~L~~L~~l~~~~l~~lP--~-l~~l~~L 248 (350)
T 4ay9_X 176 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS---YGLENLKKLRARSTYNLKKLP--T-LEKLVAL 248 (350)
T ss_dssp TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCS---SSCTTCCEEECTTCTTCCCCC--C-TTTCCSC
T ss_pred ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccCh---hhhccchHhhhccCCCcCcCC--C-chhCcCh
Confidence 3567778777655554433344567788888998888 5543211 225566666665554443222 1 3467889
Q ss_pred cEeecCCccccc
Q 021374 297 EFLSSGAEMNCC 308 (313)
Q Consensus 297 ~~L~l~~~~~~~ 308 (313)
+.+++.++..||
T Consensus 249 ~~l~l~~~~~c~ 260 (350)
T 4ay9_X 249 MEASLTYPSHCC 260 (350)
T ss_dssp CEEECSCHHHHH
T ss_pred hhCcCCCCcccc
Confidence 999998777665
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.58 E-value=3.4e-09 Score=81.83 Aligned_cols=104 Identities=18% Similarity=0.206 Sum_probs=47.5
Q ss_pred cCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCC
Q 021374 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLA 243 (313)
Q Consensus 164 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 243 (313)
.+++|++|+++++ .++. ++.+ ..+++|+.|+++++ .+.. +......+++|+.|+++++ .+.. +..+..++
T Consensus 46 ~l~~L~~L~ls~n-~l~~--l~~~-~~l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~L~L~~N-~l~~--l~~~~~l~ 115 (198)
T 1ds9_A 46 TLKACKHLALSTN-NIEK--ISSL-SGMENLRILSLGRN-LIKK--IENLDAVADTLEELWISYN-QIAS--LSGIEKLV 115 (198)
T ss_dssp HTTTCSEEECSEE-EESC--CCCH-HHHTTCCEEEEEEE-EECS--CSSHHHHHHHCSEEEEEEE-ECCC--HHHHHHHH
T ss_pred cCCCCCEEECCCC-CCcc--cccc-ccCCCCCEEECCCC-Cccc--ccchhhcCCcCCEEECcCC-cCCc--CCccccCC
Confidence 4555566655553 2322 1112 22455566655553 2221 2222333455555555553 3332 12344455
Q ss_pred CCCEEecCCCCCCChH-HHHHhhCCCCCceeeccCC
Q 021374 244 HLKFLDLCGAQNLSDE-GLACIAKCKNLVSLNLTWC 278 (313)
Q Consensus 244 ~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~ 278 (313)
+|++|++++| .+++. .+..+.++++|++|++++|
T Consensus 116 ~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 116 NLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred CCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCC
Confidence 5556666555 33332 2234455555666665555
No 135
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.56 E-value=2.3e-06 Score=64.95 Aligned_cols=120 Identities=13% Similarity=0.253 Sum_probs=67.7
Q ss_pred HHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhC---CCCcEEecCCCCCCCHHHHHHH---HhhCCCCCEEEeCCCCC
Q 021374 157 GIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY---QELESLNLTRCVKLTDGGLQKI---LIKCSSLRSLNLYALSG 230 (313)
Q Consensus 157 ~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~---~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~ 230 (313)
.+..+...-+.|++|++++...+++.+...+...+ ..|+.|+|++ +.+.+.+...+ +..-+.|++|++++ ..
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~-n~igd~ga~alA~aL~~N~tL~~L~L~~-N~ 109 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLAN-TAISDSEARGLIELIETSPSLRVLNVES-NF 109 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTT-SCCBHHHHTTHHHHHHHCSSCCEEECCS-SB
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccC-CCCChHHHHHHHHHHhcCCccCeEecCC-Cc
Confidence 35555555667777777664356666665555433 4677777777 36666554333 33445677777766 45
Q ss_pred CCHHHHHHhh----cCCCCCEEecCCCC--CCChHHHHHh----hCCCCCceeeccCC
Q 021374 231 FTDEAYKKIS----LLAHLKFLDLCGAQ--NLSDEGLACI----AKCKNLVSLNLTWC 278 (313)
Q Consensus 231 ~~~~~~~~l~----~~~~L~~L~l~~~~--~~~~~~~~~l----~~~~~L~~L~l~~~ 278 (313)
+.+.+...+. .-+.|++|+|+++. .+.+.+...+ ...++|+.|+++++
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 6666655543 33456666666442 3455443332 23566666666544
No 136
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.54 E-value=2.9e-08 Score=86.59 Aligned_cols=73 Identities=22% Similarity=0.120 Sum_probs=34.5
Q ss_pred CCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCcc
Q 021374 218 SSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLE 297 (313)
Q Consensus 218 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 297 (313)
++|+.|+++++ .+.. +..++.+++|++|++++| .++.- . ...++|++|++++| .++. +....++|+
T Consensus 215 ~~L~~L~l~~n-~l~~--lp~~~~l~~L~~L~l~~N-~l~~l--~--~~~~~L~~L~l~~N-~l~~-----l~~~~~~L~ 280 (454)
T 1jl5_A 215 LSLESIVAGNN-ILEE--LPELQNLPFLTTIYADNN-LLKTL--P--DLPPSLEALNVRDN-YLTD-----LPELPQSLT 280 (454)
T ss_dssp TTCCEEECCSS-CCSS--CCCCTTCTTCCEEECCSS-CCSSC--C--SCCTTCCEEECCSS-CCSC-----CCCCCTTCC
T ss_pred CcccEEECcCC-cCCc--ccccCCCCCCCEEECCCC-cCCcc--c--ccccccCEEECCCC-cccc-----cCcccCcCC
Confidence 35555555553 2221 112445566666666665 33320 0 11356666666665 3332 111235666
Q ss_pred EeecCCc
Q 021374 298 FLSSGAE 304 (313)
Q Consensus 298 ~L~l~~~ 304 (313)
.|++++|
T Consensus 281 ~L~ls~N 287 (454)
T 1jl5_A 281 FLDVSEN 287 (454)
T ss_dssp EEECCSS
T ss_pred EEECcCC
Confidence 6666665
No 137
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.52 E-value=1.1e-07 Score=83.01 Aligned_cols=73 Identities=19% Similarity=0.122 Sum_probs=32.9
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCc
Q 021374 192 QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLV 271 (313)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 271 (313)
++|+.|+++++ .+.. +.. +..+++|+.|+++++ .+... . ...++|++|++++| .++.- . ...++|+
T Consensus 215 ~~L~~L~l~~n-~l~~--lp~-~~~l~~L~~L~l~~N-~l~~l--~--~~~~~L~~L~l~~N-~l~~l--~--~~~~~L~ 280 (454)
T 1jl5_A 215 LSLESIVAGNN-ILEE--LPE-LQNLPFLTTIYADNN-LLKTL--P--DLPPSLEALNVRDN-YLTDL--P--ELPQSLT 280 (454)
T ss_dssp TTCCEEECCSS-CCSS--CCC-CTTCTTCCEEECCSS-CCSSC--C--SCCTTCCEEECCSS-CCSCC--C--CCCTTCC
T ss_pred CcccEEECcCC-cCCc--ccc-cCCCCCCCEEECCCC-cCCcc--c--ccccccCEEECCCC-ccccc--C--cccCcCC
Confidence 34555555553 2221 111 345566666666653 22210 0 12356666666665 33320 0 0135566
Q ss_pred eeeccCC
Q 021374 272 SLNLTWC 278 (313)
Q Consensus 272 ~L~l~~~ 278 (313)
+|++++|
T Consensus 281 ~L~ls~N 287 (454)
T 1jl5_A 281 FLDVSEN 287 (454)
T ss_dssp EEECCSS
T ss_pred EEECcCC
Confidence 6666655
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.50 E-value=1.3e-09 Score=91.12 Aligned_cols=60 Identities=17% Similarity=0.105 Sum_probs=26.0
Q ss_pred hhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCC-EEecCCCCCCChHHHHHhhCCCCCceeeccCC
Q 021374 215 IKCSSLRSLNLYALSGFTDEAYKKISLLAHLK-FLDLCGAQNLSDEGLACIAKCKNLVSLNLTWC 278 (313)
Q Consensus 215 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 278 (313)
.+|++|+.|.+... +......++..+++|+ .+.+.+ .++.-+...+.+|++|+.|++.++
T Consensus 247 ~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 247 AQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD 307 (329)
T ss_dssp TTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS
T ss_pred hCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC
Confidence 44555555555441 2222223344455555 555544 232222223444555555555433
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.47 E-value=3.1e-08 Score=82.72 Aligned_cols=200 Identities=17% Similarity=0.220 Sum_probs=119.9
Q ss_pred ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCC--------hHH-----------HHHHHhc----
Q 021374 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKIS--------DKG-----------IEIISST---- 138 (313)
Q Consensus 82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~--------~~~-----------~~~~~~~---- 138 (313)
...+++.|.+.+. +....+..+.. .+++|+.|+|+++. +. ... ....+..
T Consensus 23 ~~~~l~~L~l~g~--i~~~~~~~l~~----~l~~L~~LdLs~n~-i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~ 95 (329)
T 3sb4_A 23 EANSITHLTLTGK--LNAEDFRHLRD----EFPSLKVLDISNAE-IKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNG 95 (329)
T ss_dssp HHHHCSEEEEEEE--ECHHHHHHHHH----SCTTCCEEEEEEEE-ECCEEESSSSSGGGCCEEECTTEECTTTTEEEETT
T ss_pred hhCceeEEEEecc--ccHHHHHHHHH----hhccCeEEecCcce-eEEecCccccccccccccccccccCHHHhcccccc
Confidence 3567899999874 55555665533 26899999998753 22 000 0112245
Q ss_pred ----CCCCcEEEecCC-cccCHHHHHHHHhcCCCCcEEeccCCc--ccchHHHHHHHHhCCCC-----------------
Q 021374 139 ----CPELKVFSIYWN-VRVTDIGIQHLVKNCKHIIDLNLSGCK--NLLDKSLQLIADNYQEL----------------- 194 (313)
Q Consensus 139 ----~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~l~~l~~~~~~L----------------- 194 (313)
|++|++|.++.. ..+.+.. +..|++|+.|.+.... .+.+..+ ..+.++
T Consensus 96 ~~~g~~~L~~l~L~~~i~~I~~~a----F~~~~~L~~l~l~~n~i~~i~~~aF----~~~~~l~~l~~~~~~~~~~~~~i 167 (329)
T 3sb4_A 96 VTKGKQTLEKVILSEKIKNIEDAA----FKGCDNLKICQIRKKTAPNLLPEAL----ADSVTAIFIPLGSSDAYRFKNRW 167 (329)
T ss_dssp EEEECTTCCC-CBCTTCCEECTTT----TTTCTTCCEEEBCCSSCCEECTTSS----CTTTCEEEECTTCTHHHHTSTTT
T ss_pred cccccCCCcEEECCccccchhHHH----hhcCcccceEEcCCCCccccchhhh----cCCCceEEecCcchhhhhccccc
Confidence 889999998752 1233222 3568999999987642 1111111 012222
Q ss_pred -------------------------------------cEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHH
Q 021374 195 -------------------------------------ESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYK 237 (313)
Q Consensus 195 -------------------------------------~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 237 (313)
+.+.+.+ .+....+..+...+++|+.|++.++ .+......
T Consensus 168 ~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~ 244 (329)
T 3sb4_A 168 EHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEG--KLDNADFKLIRDYMPNLVSLDISKT-NATTIPDF 244 (329)
T ss_dssp TTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTT
T ss_pred cccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEee--eecHHHHHHHHHhcCCCeEEECCCC-CcceecHh
Confidence 2233322 2333444555556899999999873 35444445
Q ss_pred HhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCc-eeeccCCCCCChHHHHHHHHhCCCccEeecCCc
Q 021374 238 KISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLV-SLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAE 304 (313)
Q Consensus 238 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 304 (313)
.+..+++|+.+++.++ ++.-+-..+.+|++|+ .+++.+ .++..+-. .+.+|++|+.|++.++
T Consensus 245 aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~-aF~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 245 TFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFG-AFMGCDNLRYVLATGD 307 (329)
T ss_dssp TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTT-TTTTCTTEEEEEECSS
T ss_pred hhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchh-hhhCCccCCEEEeCCC
Confidence 6778899999999886 5544445577899999 999976 34333322 2347999999998654
No 140
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.46 E-value=5.9e-06 Score=62.65 Aligned_cols=119 Identities=19% Similarity=0.163 Sum_probs=62.2
Q ss_pred HHHHhcCCCCcEEEecCCcccCHHHHHHHHhc---CCCCcEEeccCCcccchHHHHHHHHh---CCCCcEEecCCCCCCC
Q 021374 133 EIISSTCPELKVFSIYWNVRVTDIGIQHLVKN---CKHIIDLNLSGCKNLLDKSLQLIADN---YQELESLNLTRCVKLT 206 (313)
Q Consensus 133 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~l~~l~~~---~~~L~~L~l~~~~~~~ 206 (313)
..+...-+.|+.|+|+++..+.+.+...++.. -..|+.|+|+++ .+++.+...++.. =..|++|+|++ +.+.
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~-N~Ig 111 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVES-NFLT 111 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCS-SBCC
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCC-CcCC
Confidence 33334445556666554335555554444332 245666666664 4555554444332 25666666666 4666
Q ss_pred HHHHHHHHhhC---CCCCEEEeCCCC--CCCHHHHHH----hhcCCCCCEEecCCC
Q 021374 207 DGGLQKILIKC---SSLRSLNLYALS--GFTDEAYKK----ISLLAHLKFLDLCGA 253 (313)
Q Consensus 207 ~~~~~~~~~~~---~~L~~L~l~~~~--~~~~~~~~~----l~~~~~L~~L~l~~~ 253 (313)
+.+...+...+ +.|+.|+++++. .+.+.+... +..-++|+.|+++.+
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 66665554433 356777766431 345443333 334566777777654
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.44 E-value=3.9e-08 Score=73.79 Aligned_cols=83 Identities=18% Similarity=0.101 Sum_probs=54.8
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCc
Q 021374 192 QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLV 271 (313)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 271 (313)
++|+.|++++ +.+.... ...+..+++|+.|+++++ .+.......+..+++|++|++++| .++......+.++++|+
T Consensus 30 ~~l~~L~L~~-N~i~~~~-~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~ 105 (170)
T 3g39_A 30 TTTQVLYLYD-NQITKLE-PGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLT 105 (170)
T ss_dssp TTCSEEECCS-SCCCCCC-TTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred CCCcEEEcCC-CcCCccC-hhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCC
Confidence 6788888888 4554311 123456788888888873 454433344567788888888888 55543333466778888
Q ss_pred eeeccCC
Q 021374 272 SLNLTWC 278 (313)
Q Consensus 272 ~L~l~~~ 278 (313)
+|++++|
T Consensus 106 ~L~L~~N 112 (170)
T 3g39_A 106 HIWLLNN 112 (170)
T ss_dssp EEECCSS
T ss_pred EEEeCCC
Confidence 8888887
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.38 E-value=6.3e-08 Score=72.92 Aligned_cols=84 Identities=18% Similarity=0.118 Sum_probs=54.9
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCc
Q 021374 192 QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLV 271 (313)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 271 (313)
++|+.|++++ +.+... ....+..+++|+.|+++++ .+.......+..+++|++|++++| .++......+.++++|+
T Consensus 33 ~~L~~L~Ls~-N~l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~ 108 (174)
T 2r9u_A 33 TDKQRLWLNN-NQITKL-EPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLT 108 (174)
T ss_dssp TTCSEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCS
T ss_pred CCCcEEEeCC-CCcccc-CHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC-ccceeCHHHhccccCCC
Confidence 6788888888 455431 1223466788888888873 454433333567788888888887 55543223366778888
Q ss_pred eeeccCCC
Q 021374 272 SLNLTWCV 279 (313)
Q Consensus 272 ~L~l~~~~ 279 (313)
+|++++|+
T Consensus 109 ~L~L~~N~ 116 (174)
T 2r9u_A 109 HIYLYNNP 116 (174)
T ss_dssp EEECCSSC
T ss_pred EEEeCCCC
Confidence 88888873
No 143
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.38 E-value=1.1e-07 Score=84.96 Aligned_cols=179 Identities=16% Similarity=0.106 Sum_probs=117.9
Q ss_pred CCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHh
Q 021374 84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK 163 (313)
Q Consensus 84 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 163 (313)
.+++.|+++++. ++. +.. .-+++|+.|+++++ .++... ..+++|++|+++++ .++. +.. .
T Consensus 59 ~~L~~L~Ls~n~-L~~-----lp~---~l~~~L~~L~Ls~N-~l~~ip-----~~l~~L~~L~Ls~N-~l~~--ip~-l- 118 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSS-----LPD---NLPPQITVLEITQN-ALISLP-----ELPASLEYLDACDN-RLST--LPE-L- 118 (571)
T ss_dssp TTCSEEECCSSC-CSC-----CCS---CCCTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSC--CCC-C-
T ss_pred CCccEEEeCCCC-CCc-----cCH---hHcCCCCEEECcCC-CCcccc-----cccCCCCEEEccCC-CCCC--cch-h-
Confidence 489999998763 432 110 12378999999986 444322 45789999999988 5554 222 1
Q ss_pred cCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCC
Q 021374 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLA 243 (313)
Q Consensus 164 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 243 (313)
..+|++|+++++ .++. ++. .+++|+.|+++++ .++. ++. .+++|+.|+++++ .++... . +. +
T Consensus 119 -~~~L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N-~L~~lp-~-l~--~ 180 (571)
T 3cvr_A 119 -PASLKHLDVDNN-QLTM--LPE---LPALLEYINADNN-QLTM--LPE---LPTSLEVLSVRNN-QLTFLP-E-LP--E 180 (571)
T ss_dssp -CTTCCEEECCSS-CCSC--CCC---CCTTCCEEECCSS-CCSC--CCC---CCTTCCEEECCSS-CCSCCC-C-CC--T
T ss_pred -hcCCCEEECCCC-cCCC--CCC---cCccccEEeCCCC-ccCc--CCC---cCCCcCEEECCCC-CCCCcc-h-hh--C
Confidence 238999999986 4544 222 4789999999994 5553 222 5789999999985 343311 1 33 8
Q ss_pred CCCEEecCCCCCCChHHHHHhhC-----CCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCccc
Q 021374 244 HLKFLDLCGAQNLSDEGLACIAK-----CKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMN 306 (313)
Q Consensus 244 ~L~~L~l~~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 306 (313)
+|++|++++| .++.-. . +.. .+.|+.|++++| .++... ..+. .+++|+.|++++|.-
T Consensus 181 ~L~~L~Ls~N-~L~~lp-~-~~~~L~~~~~~L~~L~Ls~N-~l~~lp-~~l~-~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 181 SLEALDVSTN-LLESLP-A-VPVRNHHSEETEIFFRCREN-RITHIP-ENIL-SLDPTCTIILEDNPL 242 (571)
T ss_dssp TCCEEECCSS-CCSSCC-C-CC--------CCEEEECCSS-CCCCCC-GGGG-GSCTTEEEECCSSSC
T ss_pred CCCEEECcCC-CCCchh-h-HHHhhhcccccceEEecCCC-cceecC-HHHh-cCCCCCEEEeeCCcC
Confidence 9999999999 565321 1 322 223399999998 666421 2233 489999999999863
No 144
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.33 E-value=1.1e-07 Score=72.97 Aligned_cols=108 Identities=20% Similarity=0.142 Sum_probs=51.3
Q ss_pred CCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCC
Q 021374 140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSS 219 (313)
Q Consensus 140 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 219 (313)
++|++|+++++ .++. +...+..+++|+.|+++++ .++......+ ..+++|+.|++++ +.+.... ...+..+++
T Consensus 31 ~~l~~L~L~~n-~i~~--ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f-~~l~~L~~L~Ls~-N~l~~i~-~~~f~~l~~ 103 (193)
T 2wfh_A 31 RDVTELYLDGN-QFTL--VPKELSNYKHLTLIDLSNN-RISTLSNQSF-SNMTQLLTLILSY-NRLRCIP-PRTFDGLKS 103 (193)
T ss_dssp TTCCEEECCSS-CCCS--CCGGGGGCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCS-SCCCBCC-TTTTTTCTT
T ss_pred CCCCEEECCCC-cCch--hHHHhhcccCCCEEECCCC-cCCEeCHhHc-cCCCCCCEEECCC-CccCEeC-HHHhCCCCC
Confidence 45666666655 3332 1122344566666666653 3332111111 2356666666666 3333211 112345566
Q ss_pred CCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCC
Q 021374 220 LRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQN 255 (313)
Q Consensus 220 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 255 (313)
|+.|+++++ .+.......+..+++|++|++++|+.
T Consensus 104 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 104 LRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCe
Confidence 666666652 33322222344556666666666643
No 145
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.32 E-value=4e-08 Score=75.31 Aligned_cols=113 Identities=18% Similarity=0.198 Sum_probs=74.4
Q ss_pred CCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCC
Q 021374 140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSS 219 (313)
Q Consensus 140 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 219 (313)
++|+.|+++++ .++.......+..+++|++|+++++ .++...... ...+++|+.|++++ +.+.... ...+..+++
T Consensus 29 ~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~-N~l~~~~-~~~~~~l~~ 103 (192)
T 1w8a_A 29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNA-FEGASHIQELQLGE-NKIKEIS-NKMFLGLHQ 103 (192)
T ss_dssp TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCS-CCCCEEC-SSSSTTCTT
T ss_pred CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhH-cCCcccCCEEECCC-CcCCccC-HHHhcCCCC
Confidence 48899999887 5543222122356889999999985 444321122 23478999999988 4555421 112456789
Q ss_pred CCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCCh
Q 021374 220 LRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSD 258 (313)
Q Consensus 220 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 258 (313)
|+.|+++++ .++......+..+++|++|++++|+...+
T Consensus 104 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 104 LKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 999999884 56554445567788999999999854433
No 146
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.30 E-value=2.5e-08 Score=92.01 Aligned_cols=84 Identities=21% Similarity=0.156 Sum_probs=41.0
Q ss_pred CCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCC
Q 021374 191 YQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNL 270 (313)
Q Consensus 191 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 270 (313)
+++|+.|+|+++ .+. .++..+..+++|+.|+++++ .++ .....++.+++|++|+|++| .++.- ...+.++++|
T Consensus 246 l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N-~l~-~lp~~~~~l~~L~~L~L~~N-~l~~l-p~~~~~l~~L 318 (727)
T 4b8c_D 246 YDFLTRLYLNGN-SLT--ELPAEIKNLSNLRVLDLSHN-RLT-SLPAELGSCFQLKYFYFFDN-MVTTL-PWEFGNLCNL 318 (727)
T ss_dssp CCSCSCCBCTTS-CCS--CCCGGGGGGTTCCEEECTTS-CCS-SCCSSGGGGTTCSEEECCSS-CCCCC-CSSTTSCTTC
T ss_pred CCCCCEEEeeCC-cCc--ccChhhhCCCCCCEEeCcCC-cCC-ccChhhcCCCCCCEEECCCC-CCCcc-ChhhhcCCCc
Confidence 555555555552 333 12222345556666666553 333 22233455566666666665 33321 1224556666
Q ss_pred ceeeccCCCCCC
Q 021374 271 VSLNLTWCVRIT 282 (313)
Q Consensus 271 ~~L~l~~~~~~~ 282 (313)
++|+|++| .++
T Consensus 319 ~~L~L~~N-~l~ 329 (727)
T 4b8c_D 319 QFLGVEGN-PLE 329 (727)
T ss_dssp CCEECTTS-CCC
T ss_pred cEEeCCCC-ccC
Confidence 66666665 444
No 147
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.23 E-value=1.6e-07 Score=70.85 Aligned_cols=109 Identities=16% Similarity=0.116 Sum_probs=59.9
Q ss_pred CCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCC
Q 021374 139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCS 218 (313)
Q Consensus 139 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 218 (313)
.++|+.|+++++ .++... ......+++|++|+++++ .++.... .....+++|+.|+++++ .+... ....+..++
T Consensus 27 ~~~l~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~-~~~~~~~l~ 100 (177)
T 2o6r_A 27 PSSATRLELESN-KLQSLP-HGVFDKLTQLTKLSLSQN-QIQSLPD-GVFDKLTKLTILYLHEN-KLQSL-PNGVFDKLT 100 (177)
T ss_dssp CTTCSEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCT
T ss_pred CCCCcEEEeCCC-cccEeC-HHHhcCcccccEEECCCC-cceEeCh-hHccCCCccCEEECCCC-Ccccc-CHHHhhCCc
Confidence 357777777776 443211 112245677778877774 3332111 11234677788887773 44421 111235567
Q ss_pred CCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCC
Q 021374 219 SLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQ 254 (313)
Q Consensus 219 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 254 (313)
+|+.|+++++ .+.......+..+++|++|++++|+
T Consensus 101 ~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 101 QLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 7778877763 4443222334567777788887774
No 148
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.21 E-value=1.3e-07 Score=87.41 Aligned_cols=108 Identities=21% Similarity=0.217 Sum_probs=78.7
Q ss_pred HHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCC
Q 021374 188 ADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKC 267 (313)
Q Consensus 188 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 267 (313)
...+++|+.|+|+++ .+.. +..-+..+++|+.|+++++ .++ .....+..+++|++|+|++| .++ .....+.++
T Consensus 220 ~~~l~~L~~L~Ls~n-~l~~--l~~~~~~l~~L~~L~Ls~N-~l~-~lp~~~~~l~~L~~L~Ls~N-~l~-~lp~~~~~l 292 (727)
T 4b8c_D 220 KYDDQLWHALDLSNL-QIFN--ISANIFKYDFLTRLYLNGN-SLT-ELPAEIKNLSNLRVLDLSHN-RLT-SLPAELGSC 292 (727)
T ss_dssp --CCCCCCEEECTTS-CCSC--CCGGGGGCCSCSCCBCTTS-CCS-CCCGGGGGGTTCCEEECTTS-CCS-SCCSSGGGG
T ss_pred hccCCCCcEEECCCC-CCCC--CChhhcCCCCCCEEEeeCC-cCc-ccChhhhCCCCCCEEeCcCC-cCC-ccChhhcCC
Confidence 345789999999985 4442 2222347899999999985 555 33455788999999999999 566 333457789
Q ss_pred CCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374 268 KNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM 305 (313)
Q Consensus 268 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 305 (313)
++|++|+|++| .++.... . +..+++|+.|+|++|.
T Consensus 293 ~~L~~L~L~~N-~l~~lp~-~-~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 293 FQLKYFYFFDN-MVTTLPW-E-FGNLCNLQFLGVEGNP 327 (727)
T ss_dssp TTCSEEECCSS-CCCCCCS-S-TTSCTTCCCEECTTSC
T ss_pred CCCCEEECCCC-CCCccCh-h-hhcCCCccEEeCCCCc
Confidence 99999999998 6653221 2 4478999999999885
No 149
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.18 E-value=2.1e-09 Score=90.64 Aligned_cols=205 Identities=14% Similarity=0.104 Sum_probs=116.7
Q ss_pred CCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHh
Q 021374 84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK 163 (313)
Q Consensus 84 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 163 (313)
+++++|+++++. ++. +....+..+++|+.|+|+++........ ..+..+++|+++.+..+..+.... ...+.
T Consensus 30 ~~l~~L~Ls~N~-i~~-----i~~~~f~~l~~L~~L~Ls~N~i~~~i~~-~~f~~L~~l~~~l~~~~N~l~~l~-~~~f~ 101 (350)
T 4ay9_X 30 RNAIELRFVLTK-LRV-----IQKGAFSGFGDLEKIEISQNDVLEVIEA-DVFSNLPKLHEIRIEKANNLLYIN-PEAFQ 101 (350)
T ss_dssp TTCSEEEEESCC-CSE-----ECTTSSTTCTTCCEEEEECCTTCCEECT-TSBCSCTTCCEEEEEEETTCCEEC-TTSBC
T ss_pred CCCCEEEccCCc-CCC-----cCHHHHcCCCCCCEEECcCCCCCCccCh-hHhhcchhhhhhhcccCCcccccC-chhhh
Confidence 578999998863 432 2222246779999999998643332111 122456777665443332443221 11235
Q ss_pred cCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCC
Q 021374 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLA 243 (313)
Q Consensus 164 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 243 (313)
.+++|++|+++++ .+....-... ....++..+++.++..+.......+......++.|+++++ .+.... .......
T Consensus 102 ~l~~L~~L~l~~n-~l~~~~~~~~-~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~-~~~f~~~ 177 (350)
T 4ay9_X 102 NLPNLQYLLISNT-GIKHLPDVHK-IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIH-NSAFNGT 177 (350)
T ss_dssp CCTTCCEEEEEEE-CCSSCCCCTT-CCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEEC-TTSSTTE
T ss_pred hcccccccccccc-ccccCCchhh-cccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCC-hhhcccc
Confidence 6789999999885 3332111011 1235677888876555443111111112246888999873 444321 1122456
Q ss_pred CCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374 244 HLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM 305 (313)
Q Consensus 244 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 305 (313)
+|++|.+.++..++.-....+.++++|++|++++| .++.... ..+.+|++|.+.++.
T Consensus 178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~----~~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS----YGLENLKKLRARSTY 234 (350)
T ss_dssp EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCS----SSCTTCCEEECTTCT
T ss_pred chhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccCh----hhhccchHhhhccCC
Confidence 89999998765665543344678899999999998 6654321 134567777665543
No 150
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.01 E-value=1.1e-06 Score=69.97 Aligned_cols=48 Identities=25% Similarity=0.292 Sum_probs=40.9
Q ss_pred CCchHHHHHHHcCCCccchhHHhhccHHHHHHHccCCCcceeecccccc
Q 021374 20 ETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMN 68 (313)
Q Consensus 20 ~~~peiL~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~~l~~~~~~ 68 (313)
.+|.||+.+||+||+++|+++++.|||+|+.+ +.++.+|+.+-.....
T Consensus 7 ~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l-a~D~~LWr~~l~rd~~ 54 (312)
T 3l2o_B 7 RLPIDVQLYILSFLSPHDLCQLGSTNHYWNET-VRDPILWRYFLLRDLP 54 (312)
T ss_dssp HSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH-HTCHHHHHHHHHSSGG
T ss_pred hCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-hccchHHHHHHhccCC
Confidence 34448999999999999999999999999977 6999999987665443
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.97 E-value=3.8e-06 Score=62.83 Aligned_cols=84 Identities=18% Similarity=0.093 Sum_probs=47.2
Q ss_pred CCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCC
Q 021374 166 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHL 245 (313)
Q Consensus 166 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 245 (313)
++|+.|+++++ .++.... .....+++|+.|++++ +.+... ....+..+++|+.|+++++ .+.......+..+++|
T Consensus 30 ~~l~~L~L~~N-~i~~~~~-~~~~~l~~L~~L~Ls~-N~l~~l-~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 104 (170)
T 3g39_A 30 TTTQVLYLYDN-QITKLEP-GVFDRLTQLTRLDLDN-NQLTVL-PAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSL 104 (170)
T ss_dssp TTCSEEECCSS-CCCCCCT-TTTTTCTTCSEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred CCCcEEEcCCC-cCCccCh-hhhcCcccCCEEECCC-CCcCcc-ChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCC
Confidence 56777777774 3333111 1123467777777777 344421 1112356677777777763 4443333345567777
Q ss_pred CEEecCCCC
Q 021374 246 KFLDLCGAQ 254 (313)
Q Consensus 246 ~~L~l~~~~ 254 (313)
++|++++|+
T Consensus 105 ~~L~L~~N~ 113 (170)
T 3g39_A 105 THIWLLNNP 113 (170)
T ss_dssp CEEECCSSC
T ss_pred CEEEeCCCC
Confidence 777777774
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.89 E-value=1.8e-06 Score=72.49 Aligned_cols=85 Identities=19% Similarity=0.124 Sum_probs=49.5
Q ss_pred hCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCC
Q 021374 190 NYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKN 269 (313)
Q Consensus 190 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 269 (313)
.+++|+.|+|++.+.+.... ...+.++++|+.|+++++ .+.......+..+++|++|+|++| .++......+...+
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~-~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~- 104 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLS- 104 (347)
T ss_dssp SCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTCSCC-
T ss_pred CCCCeeEEEccCCCCCCCcC-hhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHcccCC-
Confidence 35678888887534444311 112456777788887773 555544445667777788887777 44432211222233
Q ss_pred CceeeccCC
Q 021374 270 LVSLNLTWC 278 (313)
Q Consensus 270 L~~L~l~~~ 278 (313)
|+.|++.+|
T Consensus 105 L~~l~l~~N 113 (347)
T 2ifg_A 105 LQELVLSGN 113 (347)
T ss_dssp CCEEECCSS
T ss_pred ceEEEeeCC
Confidence 777777776
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.83 E-value=6e-05 Score=60.29 Aligned_cols=83 Identities=28% Similarity=0.238 Sum_probs=43.2
Q ss_pred hhCCCCCEEEeCCCCCCCH--HHHHHhhcCCCCCEEecCCCCCCChH-HHHHhhCCCCCceeeccCCCCCCh------HH
Q 021374 215 IKCSSLRSLNLYALSGFTD--EAYKKISLLAHLKFLDLCGAQNLSDE-GLACIAKCKNLVSLNLTWCVRITD------VG 285 (313)
Q Consensus 215 ~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~------~~ 285 (313)
.++++|+.|++++. .+.. .....+..+++|++|+|++| .+++. .+..+..+ +|++|++++| .+.. .-
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~N-pl~~~~~~~~~y 242 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGN-SLCDTFRDQSTY 242 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTS-TTGGGCSSHHHH
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCC-cCccccCcchhH
Confidence 34556666666552 3332 11123345667777777776 44432 22223333 7777777776 3432 22
Q ss_pred HHHHHHhCCCccEeec
Q 021374 286 VMAIAEGCSSLEFLSS 301 (313)
Q Consensus 286 ~~~l~~~~~~L~~L~l 301 (313)
...+...+|+|+.||=
T Consensus 243 ~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 243 ISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHCTTCCEESS
T ss_pred HHHHHHHCcccCeECC
Confidence 3345566777777753
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.81 E-value=4.2e-06 Score=62.81 Aligned_cols=84 Identities=18% Similarity=0.127 Sum_probs=49.2
Q ss_pred CCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCC
Q 021374 166 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHL 245 (313)
Q Consensus 166 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 245 (313)
++|+.|+++++ .++... ......+++|+.|++++ +.+... ....+..+++|+.|+++++ .+.......+..+++|
T Consensus 33 ~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~Ls~-N~l~~i-~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L 107 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLE-PGVFDHLVNLQQLYFNS-NKLTAI-PTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSL 107 (174)
T ss_dssp TTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred CCCcEEEeCCC-CccccC-HHHhcCCcCCCEEECCC-CCCCcc-ChhHhCCcchhhEEECCCC-ccceeCHHHhccccCC
Confidence 57788888774 343311 11223467788888877 355431 1112356678888888773 4443222335667788
Q ss_pred CEEecCCCC
Q 021374 246 KFLDLCGAQ 254 (313)
Q Consensus 246 ~~L~l~~~~ 254 (313)
++|++++|+
T Consensus 108 ~~L~L~~N~ 116 (174)
T 2r9u_A 108 THIYLYNNP 116 (174)
T ss_dssp SEEECCSSC
T ss_pred CEEEeCCCC
Confidence 888888774
No 155
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.67 E-value=1.2e-05 Score=64.81 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=36.2
Q ss_pred CCchHHHHHHHcCCCccchh-HHhhccHHHHHHHccCCCcceee
Q 021374 20 ETVPKVIRIMSTRLSQRDII-SLLLVSPWLHRTLVSYPSLWLVI 62 (313)
Q Consensus 20 ~~~peiL~~If~~L~~~~l~-~~~~v~~~w~~~~~~~~~~~~~l 62 (313)
.+++|+|..||+||++++++ +++.|||+|+.+ +.++.+|+..
T Consensus 53 ~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l-~~~~~~w~~~ 95 (297)
T 2e31_A 53 ELPEPLLLRVLAELPATELVQACRLVCLRWKEL-VDGAPLWLLK 95 (297)
T ss_dssp SSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH-HTSHHHHHHH
T ss_pred hCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH-hcChHHHHHH
Confidence 44447999999999999999 999999999987 4778888855
No 156
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.62 E-value=9.3e-06 Score=70.74 Aligned_cols=51 Identities=20% Similarity=0.158 Sum_probs=41.5
Q ss_pred ccccccCCchHHHHHHHcCCCccchhHHhhccHHHHHHHccCCCcceeecc
Q 021374 14 EETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDL 64 (313)
Q Consensus 14 ~~~~~~~~~peiL~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~~l~~ 64 (313)
..++...+|+|++.+||+||++++++++++|||+|++++...+.+|+.+.+
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~ 61 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLI 61 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHH
T ss_pred ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 344544566689999999999999999999999999985444889997654
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.48 E-value=0.00029 Score=56.29 Aligned_cols=87 Identities=32% Similarity=0.370 Sum_probs=52.6
Q ss_pred HHHHHhCCCCcEEecCCCCCCCH-HHHHHHHhhCCCCCEEEeCCCCCCCHH-HHHHhhcCCCCCEEecCCCCCCCh----
Q 021374 185 QLIADNYQELESLNLTRCVKLTD-GGLQKILIKCSSLRSLNLYALSGFTDE-AYKKISLLAHLKFLDLCGAQNLSD---- 258 (313)
Q Consensus 185 ~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~---- 258 (313)
..+...+++|+.|+|++ +.+.. .++...+..+++|+.|++++. .+.+. .+..+..+ +|++|++.+|+ ++.
T Consensus 163 ~i~~~~l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~Np-l~~~~~~ 238 (267)
T 3rw6_A 163 RIIEENIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGNS-LCDTFRD 238 (267)
T ss_dssp HHHHHHCTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTST-TGGGCSS
T ss_pred HHHHhhCCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCCc-CccccCc
Confidence 33334577888888877 45543 223344567888888888773 44432 23333334 88999998885 432
Q ss_pred -HH--HHHhhCCCCCceeec
Q 021374 259 -EG--LACIAKCKNLVSLNL 275 (313)
Q Consensus 259 -~~--~~~l~~~~~L~~L~l 275 (313)
.. ...+..+|+|+.||=
T Consensus 239 ~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 239 QSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHHHHHCTTCCEESS
T ss_pred chhHHHHHHHHCcccCeECC
Confidence 11 223556888888874
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.44 E-value=4.6e-06 Score=71.38 Aligned_cols=85 Identities=9% Similarity=0.092 Sum_probs=39.3
Q ss_pred HhhCCCCCEEEeCCCCCC----CHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHH
Q 021374 214 LIKCSSLRSLNLYALSGF----TDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAI 289 (313)
Q Consensus 214 ~~~~~~L~~L~l~~~~~~----~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l 289 (313)
+.+|++|+.+.+.+.... .......+..|++|+.+.+..+ ++.-+-..+.+|++|+.+.+..+ ++..+-..
T Consensus 267 F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~a- 341 (401)
T 4fdw_A 267 FYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKVTQLTIPAN--VTQINFSA- 341 (401)
T ss_dssp TTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSCCEEEECTT--CCEECTTS-
T ss_pred hhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCccEEEECcc--ccEEcHHh-
Confidence 345666666666542110 0111223445666666666532 33322333555666666666432 22222111
Q ss_pred HHhCCCccEeecCCc
Q 021374 290 AEGCSSLEFLSSGAE 304 (313)
Q Consensus 290 ~~~~~~L~~L~l~~~ 304 (313)
+.+| +|+.|++.++
T Consensus 342 F~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 342 FNNT-GIKEVKVEGT 355 (401)
T ss_dssp SSSS-CCCEEEECCS
T ss_pred CCCC-CCCEEEEcCC
Confidence 2245 6666666554
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.34 E-value=3.3e-06 Score=72.27 Aligned_cols=151 Identities=16% Similarity=0.208 Sum_probs=80.0
Q ss_pred hcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCC-CCCCHHHHHHHHh
Q 021374 137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRC-VKLTDGGLQKILI 215 (313)
Q Consensus 137 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~ 215 (313)
..|++|+.+++..+ .++...-..+ .+.+|+.+.+... +....-.++ ..|++|+.+.+... ..+.... +.
T Consensus 177 ~~c~~L~~l~l~~n-~l~~I~~~aF--~~~~L~~l~lp~~--l~~I~~~aF-~~~~~L~~l~l~~~l~~I~~~a----F~ 246 (401)
T 4fdw_A 177 YYCYNLKKADLSKT-KITKLPASTF--VYAGIEEVLLPVT--LKEIGSQAF-LKTSQLKTIEIPENVSTIGQEA----FR 246 (401)
T ss_dssp TTCTTCCEEECTTS-CCSEECTTTT--TTCCCSEEECCTT--CCEECTTTT-TTCTTCCCEECCTTCCEECTTT----TT
T ss_pred hCcccCCeeecCCC-cceEechhhE--eecccCEEEeCCc--hheehhhHh-hCCCCCCEEecCCCccCccccc----cc
Confidence 45667777777643 2221111111 1456676666532 211111111 23677777777541 1111111 12
Q ss_pred hCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCC-----hHHHHHhhCCCCCceeeccCCCCCChHHHHHHH
Q 021374 216 KCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLS-----DEGLACIAKCKNLVSLNLTWCVRITDVGVMAIA 290 (313)
Q Consensus 216 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~ 290 (313)
+ .+|+.+.+.. .+......++..|++|+.+.+.++. .. .-+-..+.+|++|+.+.+.+ .++..+-. .+
T Consensus 247 ~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~-~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~-aF 319 (401)
T 4fdw_A 247 E-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGST-FNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQG-LL 319 (401)
T ss_dssp T-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSC-CCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTT-TT
T ss_pred c-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCcc-ccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhh-hh
Confidence 2 5677777754 3333334456678899999887763 22 11223466788999998874 34333322 23
Q ss_pred HhCCCccEeecCCc
Q 021374 291 EGCSSLEFLSSGAE 304 (313)
Q Consensus 291 ~~~~~L~~L~l~~~ 304 (313)
.+|++|+.|.|..+
T Consensus 320 ~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 320 GGNRKVTQLTIPAN 333 (401)
T ss_dssp TTCCSCCEEEECTT
T ss_pred cCCCCccEEEECcc
Confidence 47889999988654
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.31 E-value=2.8e-05 Score=65.23 Aligned_cols=92 Identities=18% Similarity=0.194 Sum_probs=51.9
Q ss_pred HhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhc
Q 021374 162 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISL 241 (313)
Q Consensus 162 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 241 (313)
+..+++|+.|+|++.+.++..... ....+++|+.|+|++ +.+... ....+.++++|+.|+++++ .+.......+..
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~-~~~~l~~L~~L~l~~-N~l~~~-~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~ 102 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELR-DLRGLGELRNLTIVK-SGLRFV-APDAFHFTPRLSRLNLSFN-ALESLSWKTVQG 102 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGG-GSCSCCCCSEEECCS-SCCCEE-CTTGGGSCSCCCEEECCSS-CCSCCCSTTTCS
T ss_pred CCCCCCeeEEEccCCCCCCCcChh-HhccccCCCEEECCC-Ccccee-CHHHhcCCcCCCEEeCCCC-ccceeCHHHccc
Confidence 345667888888752344332111 123477888888888 455541 1123467788888888873 443221122223
Q ss_pred CCCCCEEecCCCCCCCh
Q 021374 242 LAHLKFLDLCGAQNLSD 258 (313)
Q Consensus 242 ~~~L~~L~l~~~~~~~~ 258 (313)
++ |+.|+|.+|....+
T Consensus 103 ~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 103 LS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CC-CCEEECCSSCCCCC
T ss_pred CC-ceEEEeeCCCccCC
Confidence 33 88888888754434
No 161
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.28 E-value=3.8e-05 Score=66.39 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=39.1
Q ss_pred cccCCchH----HHHHHHcCCCccchhHHhhccHHHHHHHccCCCcceeecc
Q 021374 17 WSKETVPK----VIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDL 64 (313)
Q Consensus 17 ~~~~~~pe----iL~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~~l~~ 64 (313)
+...+|+| ++.+||+||++++++++++|||+|+.+ +..+.+|+.+-.
T Consensus 10 ~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~-~~~~~~w~~~~~ 60 (435)
T 1p22_A 10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV-TSDGMLWKKLIE 60 (435)
T ss_dssp HHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH-HHHTTHHHHHHH
T ss_pred hHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-hcChHHHHHHHH
Confidence 33345558 999999999999999999999999987 467899997743
No 162
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.24 E-value=0.00011 Score=63.69 Aligned_cols=48 Identities=8% Similarity=0.064 Sum_probs=38.9
Q ss_pred cccccCCchHHHHHHHcCCCccchhHHhhccHHHHHHHccCCCcceeec
Q 021374 15 ETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVID 63 (313)
Q Consensus 15 ~~~~~~~~peiL~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~~l~ 63 (313)
.++...+|+|++.+||+||+++++.++++|||+|+.+ +..+.+|+.+.
T Consensus 16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~-~~~~~~w~~~~ 63 (445)
T 2ovr_B 16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL-AEDNLLWREKC 63 (445)
T ss_dssp CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH-HTCSHHHHHHH
T ss_pred CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh-cCchhHhhhhe
Confidence 3444345558999999999999999999999999987 46777888653
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.73 E-value=0.00018 Score=61.39 Aligned_cols=84 Identities=19% Similarity=0.301 Sum_probs=51.3
Q ss_pred HhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhC
Q 021374 214 LIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGC 293 (313)
Q Consensus 214 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 293 (313)
+..+.+|+.+.+.. .+...+..++..+.+|+.+.|... ++.-+-..+.+|.+|+.+.+..+ ++..+-. .+.+|
T Consensus 293 F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~-aF~~C 365 (394)
T 4fs7_A 293 FYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS--LRKIGAN-AFQGC 365 (394)
T ss_dssp TTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTT-TBTTC
T ss_pred cccccccccccccc--ccceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc--ccEehHH-HhhCC
Confidence 34677788887754 233222344567788888888653 44333344677888888888643 3322222 23478
Q ss_pred CCccEeecCCc
Q 021374 294 SSLEFLSSGAE 304 (313)
Q Consensus 294 ~~L~~L~l~~~ 304 (313)
++|+.+++..+
T Consensus 366 ~~L~~i~lp~~ 376 (394)
T 4fs7_A 366 INLKKVELPKR 376 (394)
T ss_dssp TTCCEEEEEGG
T ss_pred CCCCEEEECCC
Confidence 88888887554
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.08 E-value=0.0031 Score=53.66 Aligned_cols=60 Identities=15% Similarity=0.266 Sum_probs=28.8
Q ss_pred hhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCC
Q 021374 215 IKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWC 278 (313)
Q Consensus 215 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 278 (313)
.+|.+|+.+.+.. .++..+-.++..|.+|+.+.|..+ ++.-+-..+.+|++|+.+++.++
T Consensus 308 ~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 308 AGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSC
T ss_pred cCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCc
Confidence 4556666666543 122222233445566666666433 32222233555666666666543
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.05 E-value=0.0083 Score=51.02 Aligned_cols=105 Identities=15% Similarity=0.262 Sum_probs=67.5
Q ss_pred hCCCCcEEecCCCC-CCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCC
Q 021374 190 NYQELESLNLTRCV-KLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCK 268 (313)
Q Consensus 190 ~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 268 (313)
.|.+|+.+.+.... .+.. ..+.+|++|+.+.+.. .+....-.++..|.+|+.+.|..+ ++.-+-..+.+|.
T Consensus 263 ~c~~L~~i~lp~~~~~I~~----~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVSIGT----GAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCE 334 (394)
T ss_dssp TCSSCCEEECCTTCCEECT----TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCT
T ss_pred ecccccEEecccccceecC----cccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCC
Confidence 46778888775521 1111 1245788899888864 333333345668899999999764 4443334577899
Q ss_pred CCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374 269 NLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM 305 (313)
Q Consensus 269 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 305 (313)
+|+.+.+... ++..+-.. +.+|++|+.+++.++.
T Consensus 335 ~L~~i~ip~s--v~~I~~~a-F~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 335 QLERIAIPSS--VTKIPESA-FSNCTALNNIEYSGSR 368 (394)
T ss_dssp TCCEEEECTT--CCBCCGGG-GTTCTTCCEEEESSCH
T ss_pred CCCEEEECcc--cCEEhHhH-hhCCCCCCEEEECCce
Confidence 9999999643 33322222 3489999999998753
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.88 E-value=0.0067 Score=51.27 Aligned_cols=82 Identities=22% Similarity=0.338 Sum_probs=38.5
Q ss_pred hhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCC
Q 021374 215 IKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCS 294 (313)
Q Consensus 215 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 294 (313)
.++.+|+.+.+.. .+.......+..+++|+.+.+.++ .++.-+-..+.+|.+|+.+.|... ++..+-.. +.+|.
T Consensus 260 ~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~a-F~~C~ 333 (379)
T 4h09_A 260 QNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYA-FKNCK 333 (379)
T ss_dssp TTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTTT-TTTCT
T ss_pred ceeehhccccccc--cceecccccccccccccccccccc-ccceehhhhhcCCCCCCEEEcCcc--ccEEHHHH-hhCCC
Confidence 4455666666543 222222233445666666666544 233222233556666666666431 22222111 22566
Q ss_pred CccEeecC
Q 021374 295 SLEFLSSG 302 (313)
Q Consensus 295 ~L~~L~l~ 302 (313)
+|+.+.+.
T Consensus 334 ~L~~i~ip 341 (379)
T 4h09_A 334 ALSTISYP 341 (379)
T ss_dssp TCCCCCCC
T ss_pred CCCEEEEC
Confidence 66666553
No 167
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=91.73 E-value=0.0074 Score=51.34 Aligned_cols=79 Identities=11% Similarity=0.127 Sum_probs=41.8
Q ss_pred hCCCCcEEecCCCC-CCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCC
Q 021374 190 NYQELESLNLTRCV-KLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCK 268 (313)
Q Consensus 190 ~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 268 (313)
.|.+|+.+.+.... .+.. ..+.+|++|+.+.+.. .+.......+..++.|+.+.+..+...... ....+.
T Consensus 160 ~c~~L~~i~l~~~~~~I~~----~~F~~c~~L~~i~l~~--~~~~I~~~~F~~~~~L~~i~~~~~~~~i~~---~~~~~~ 230 (394)
T 4fs7_A 160 TCESLEYVSLPDSMETLHN----GLFSGCGKLKSIKLPR--NLKIIRDYCFAECILLENMEFPNSLYYLGD---FALSKT 230 (394)
T ss_dssp TCTTCCEEECCTTCCEECT----TTTTTCTTCCBCCCCT--TCCEECTTTTTTCTTCCBCCCCTTCCEECT---TTTTTC
T ss_pred ccCCCcEEecCCccceecc----ccccCCCCceEEEcCC--CceEeCchhhccccccceeecCCCceEeeh---hhcccC
Confidence 46778888876521 1111 1245677788777754 222222234456777777776554221111 122356
Q ss_pred CCceeeccC
Q 021374 269 NLVSLNLTW 277 (313)
Q Consensus 269 ~L~~L~l~~ 277 (313)
+|+.+.+..
T Consensus 231 ~l~~i~ip~ 239 (394)
T 4fs7_A 231 GVKNIIIPD 239 (394)
T ss_dssp CCCEEEECT
T ss_pred CCceEEECC
Confidence 777777653
No 168
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=90.63 E-value=0.089 Score=36.82 Aligned_cols=39 Identities=18% Similarity=0.020 Sum_probs=27.0
Q ss_pred CCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCC
Q 021374 243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRIT 282 (313)
Q Consensus 243 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 282 (313)
++|++|+|++| .++.-....+..+++|++|+|++|+..=
T Consensus 31 ~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 31 VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCeec
Confidence 37888888888 5554333445667888888888875543
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=86.76 E-value=0.29 Score=34.17 Aligned_cols=45 Identities=18% Similarity=0.051 Sum_probs=31.8
Q ss_pred CCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHH
Q 021374 218 SSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLAC 263 (313)
Q Consensus 218 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 263 (313)
++|+.|++++ +.++......+..+++|++|+|.+|+..-+-.+..
T Consensus 31 ~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~ 75 (130)
T 3rfe_A 31 VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPWRCDCRLVP 75 (130)
T ss_dssp TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHH
T ss_pred cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCeeccCccHH
Confidence 4799999988 45554444456678899999999998765544433
No 170
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=83.75 E-value=0.22 Score=41.81 Aligned_cols=84 Identities=13% Similarity=0.138 Sum_probs=53.5
Q ss_pred hhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCC
Q 021374 215 IKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCS 294 (313)
Q Consensus 215 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 294 (313)
.++.+|+.+.+.. .++.....++..+.+|+.+.+... ++..+-..+.+|++|+.+.+.++ .++..+-. .+.+|.
T Consensus 237 ~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~-aF~~c~ 310 (379)
T 4h09_A 237 YGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNS-AIETLEPR-VFMDCV 310 (379)
T ss_dssp TTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCT-TCCEECTT-TTTTCT
T ss_pred cCCccceEEEcCC--CccEeCccccceeehhcccccccc--ceecccccccccccccccccccc-ccceehhh-hhcCCC
Confidence 4567777777754 233222334556788888888654 44333344678999999999765 44433222 234789
Q ss_pred CccEeecCCc
Q 021374 295 SLEFLSSGAE 304 (313)
Q Consensus 295 ~L~~L~l~~~ 304 (313)
+|+.+.|..+
T Consensus 311 ~L~~i~lp~~ 320 (379)
T 4h09_A 311 KLSSVTLPTA 320 (379)
T ss_dssp TCCEEECCTT
T ss_pred CCCEEEcCcc
Confidence 9999998643
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=46.65 E-value=5.3 Score=26.15 Aligned_cols=35 Identities=14% Similarity=-0.027 Sum_probs=14.9
Q ss_pred hhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecC
Q 021374 215 IKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLC 251 (313)
Q Consensus 215 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 251 (313)
.+|.+|+.+.|-. .++..+-.++..|.+|+.+.+.
T Consensus 17 ~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 17 AGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEEC
T ss_pred cCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEc
Confidence 3455555555533 1222222333445555555554
No 172
>2kmz_A Tumor necrosis factor receptor superfamily member; FN14, tweak, TNF receptor, CRD, tnfrsf12A, angiogenesis, APO cell adhesion; NMR {Homo sapiens}
Probab=25.74 E-value=23 Score=19.32 Aligned_cols=13 Identities=31% Similarity=0.675 Sum_probs=9.6
Q ss_pred ecCCccccccccC
Q 021374 300 SSGAEMNCCSCSH 312 (313)
Q Consensus 300 ~l~~~~~~~~~~~ 312 (313)
||+.|+.|..|..
T Consensus 18 DLdKCmdcs~C~~ 30 (53)
T 2kmz_A 18 DLDKCMDCASCRA 30 (53)
T ss_dssp TTTCCBCSTTCSS
T ss_pred hhhhhhccccCCC
Confidence 5677888888764
Done!