BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021375
(313 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|B Chain B, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|C Chain C, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
Length = 233
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 116/209 (55%), Gaps = 14/209 (6%)
Query: 58 VTQISWRPRVFLYRGLLSNEECDHLISLGHGAEKKYKRTGEDPENVSKNKQNSSFRTELN 117
V +SW PR FL + LS+EECD+++ K K + D N S +S RT
Sbjct: 22 VVHLSWSPRAFLLKNFLSDEECDYIVE--KARPKMVKSSVVD--NESGKSVDSEIRTSTG 77
Query: 118 I-----EDDIVARIEEKILTWTFLPKENSKPVHVMRYGLDEAKE-NLDYFGNKSALGLSQ 171
ED ++++IE+++ T +P EN + + V+ Y + E + DYF + G
Sbjct: 78 TWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEH 137
Query: 172 --PLMAAVVLYLSNVTQGGELLFPNSEEK--DKMWSDCAKTSNVLRPVKGNAILFFTVHP 227
+ +++YL+ V +GGE + PN+E+K WS+CAK ++P+KG+A++F+++ P
Sbjct: 138 GGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGWSECAKRGLAVKPIKGDALMFYSLKP 197
Query: 228 NAAPDESSSHTRCPVLEGEMWSAVKFFQV 256
+ + D +S H CP L+G+ WSA K+ V
Sbjct: 198 DGSNDPASLHGSCPTLKGDKWSATKWIHV 226
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|B Chain B, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|C Chain C, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|D Chain D, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
Length = 225
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 116/209 (55%), Gaps = 14/209 (6%)
Query: 58 VTQISWRPRVFLYRGLLSNEECDHLISLGHGAEKKYKRTGEDPENVSKNKQNSSFRTELN 117
V +SW PR FL + LS+EECD+++ K K + D N S +S RT
Sbjct: 14 VVHLSWSPRAFLLKNFLSDEECDYIVE--KARPKMVKSSVVD--NESGKSVDSEIRTSTG 69
Query: 118 I-----EDDIVARIEEKILTWTFLPKENSKPVHVMRYGLDEAKE-NLDYFGNKSALGLSQ 171
ED ++++IE+++ T +P EN + + V+ Y + E + DYF + G
Sbjct: 70 TWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEH 129
Query: 172 --PLMAAVVLYLSNVTQGGELLFPNSEEK--DKMWSDCAKTSNVLRPVKGNAILFFTVHP 227
+ +++YL+ V +GGE + PN+E+K WS+CAK ++P+KG+A++F+++ P
Sbjct: 130 GGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGWSECAKRGLAVKPIKGDALMFYSLKP 189
Query: 228 NAAPDESSSHTRCPVLEGEMWSAVKFFQV 256
+ + D +S H CP L+G+ WSA K+ V
Sbjct: 190 DGSNDPASLHGSCPTLKGDKWSATKWIHV 218
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
pdb|2JIG|B Chain B, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
Length = 224
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 116/209 (55%), Gaps = 14/209 (6%)
Query: 58 VTQISWRPRVFLYRGLLSNEECDHLISLGHGAEKKYKRTGEDPENVSKNKQNSSFRTELN 117
V +SW PR FL + LS+EECD+++ K K + D N S +S RT
Sbjct: 13 VVHLSWSPRAFLLKNFLSDEECDYIVE--KARPKMVKSSVVD--NESGKSVDSEIRTSTG 68
Query: 118 I-----EDDIVARIEEKILTWTFLPKENSKPVHVMRYGLDEAKE-NLDYFGNKSALGLSQ 171
ED ++++IE+++ T +P EN + + V+ Y + E + DYF + G
Sbjct: 69 TWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEH 128
Query: 172 --PLMAAVVLYLSNVTQGGELLFPNSEEK--DKMWSDCAKTSNVLRPVKGNAILFFTVHP 227
+ +++YL+ V +GGE + PN+E+K WS+CAK ++P+KG+A++F+++ P
Sbjct: 129 GGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGWSECAKRGLAVKPIKGDALMFYSLKP 188
Query: 228 NAAPDESSSHTRCPVLEGEMWSAVKFFQV 256
+ + D +S H CP L+G+ WSA K+ V
Sbjct: 189 DGSNDPASLHGSCPTLKGDKWSATKWIHV 217
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|B Chain B, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|C Chain C, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|D Chain D, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii
Length = 233
Score = 122 bits (305), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 113/209 (54%), Gaps = 14/209 (6%)
Query: 58 VTQISWRPRVFLYRGLLSNEECDHLISLGHGAEKKYKRTGEDPENVSKNKQNSSFRTELN 117
V +SW PR FL + LS+EECD+++ K K + D N S +S RT
Sbjct: 22 VVHLSWSPRAFLLKNFLSDEECDYIVE--KARPKXVKSSVVD--NESGKSVDSEIRTSTG 77
Query: 118 I-----EDDIVARIEEKILTWTFLPKENSKPVHVMRYGLDEAKE-NLDYFGNKSALGLSQ 171
ED ++++IE+++ T +P EN + + V+ Y + E + DYF + G
Sbjct: 78 TWFAKGEDSVISKIEKRVAQVTXIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEH 137
Query: 172 PLMAAV--VLYLSNVTQGGELLFPNSEEK--DKMWSDCAKTSNVLRPVKGNAILFFTVHP 227
V + YL+ V +GGE + PN+E+K WS+CAK ++P+KG+A+ F+++ P
Sbjct: 138 GGQRVVTXLXYLTTVEEGGETVLPNAEQKVTGDGWSECAKRGLAVKPIKGDALXFYSLKP 197
Query: 228 NAAPDESSSHTRCPVLEGEMWSAVKFFQV 256
+ + D +S H CP L+G+ WSA K+ V
Sbjct: 198 DGSNDPASLHGSCPTLKGDKWSATKWIHV 226
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
pdb|3ITQ|B Chain B, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
Length = 216
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 97/195 (49%), Gaps = 26/195 (13%)
Query: 65 PRVFLYRGLLSNEECDHLISLGHGAEKKYKRTGEDPENVSKNKQNSSFRTELNI---EDD 121
P + + +LS+EECD LI L ++ K R+ V ++ + RT +++
Sbjct: 39 PLIVVLGNVLSDEECDELIEL---SKSKLARS-----KVGSSRDVNDIRTSSGAFLDDNE 90
Query: 122 IVARIEEKILTWTFLPKENSKPVHVMRYGLDEA-KENLDYFGNKSALGLSQPLMAAVVLY 180
+ A+IE++I + +P + + +H++ Y +D+ K + DYF S + ++ +V Y
Sbjct: 91 LTAKIEKRISSIXNVPASHGEGLHILNYEVDQQYKAHYDYFAEHSR-SAANNRISTLVXY 149
Query: 181 LSNVTQGGELLFPNSEEKDKMWSDCAKTSNVLRPVKGNAILFFTVHPNAAPDESSSHTRC 240
L++V +GGE FP K + + P KG A+ F + + + +E + H
Sbjct: 150 LNDVEEGGETFFP-------------KLNLSVHPRKGXAVYFEYFYQDQSLNELTLHGGA 196
Query: 241 PVLEGEMWSAVKFFQ 255
PV +GE W A ++ +
Sbjct: 197 PVTKGEKWIATQWVR 211
>pdb|1P90|A Chain A, The Three-Dimensional Structure Of The Core Domain Of Nafy
From Azotobacter Vinelandii Determined At 1.8 Resolution
Length = 145
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 243 LEGEMWSAVKF--FQVKAANAEEVLIGSDSNECTDEDDNCPHWAAVGECQRNPVYMLGSP 300
L+G S ++F +QV A +A V I S + ED N + +CQ V +G P
Sbjct: 20 LDGHFGSCLRFLVYQVSAKDASLVDIRSTLDVALAEDKNAWRVEQIQDCQVLYVVSIGGP 79
Query: 301 DYYGTCRKSCH 311
R H
Sbjct: 80 AAAKVVRAGIH 90
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 29 KELRN---KKGNWESVVQLPHSINSKRVDPSRVTQISWRPRVFLYRGLLSN--EECDHLI 83
KEL N KK ++++ L H +K +DP+ +T I+ + V+ +G + E C+ I
Sbjct: 8 KELGNDAYKKKDFDTA--LKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65
Query: 84 SLGHGAEKKYKRTGEDPENVSKNKQNSSFRTE 115
+G + Y++ + + NS F+ E
Sbjct: 66 EVGRENREDYRQIAKAYARIG----NSYFKEE 93
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 29 KELRN---KKGNWESVVQLPHSINSKRVDPSRVTQISWRPRVFLYRGLLSN--EECDHLI 83
KEL N KK ++++ L H +K +DP+ +T I+ + V+ +G + E C+ I
Sbjct: 8 KELGNDAYKKKDFDTA--LKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65
Query: 84 SLGHGAEKKYKRTGEDPENVSKNKQNSSFRTE 115
+G + Y++ + + NS F+ E
Sbjct: 66 EVGRENREDYRQIAKAYARIG----NSYFKEE 93
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 37/92 (40%), Gaps = 18/92 (19%)
Query: 136 LPKENSKPVHV---MRYGLDEAKENLDYFGNKSALG-----------LSQPLMAAVVLYL 181
+P E VH+ R+ L E + D F NK+ LG L+ + AV
Sbjct: 4 VPAEEDPEVHLGQLKRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLK 63
Query: 182 SNVTQGGELLFPNSEEKDKMWSDCAKTSNVLR 213
TQGGEL F E M A N+LR
Sbjct: 64 EERTQGGELQFQTEVEMISM----AVHRNLLR 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,240,279
Number of Sequences: 62578
Number of extensions: 372375
Number of successful extensions: 787
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 766
Number of HSP's gapped (non-prelim): 12
length of query: 313
length of database: 14,973,337
effective HSP length: 99
effective length of query: 214
effective length of database: 8,778,115
effective search space: 1878516610
effective search space used: 1878516610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)