Query 021377
Match_columns 313
No_of_seqs 149 out of 1492
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 02:28:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021377.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021377hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 3.4E-35 7.5E-40 270.8 25.2 271 3-284 51-333 (358)
2 PRK11272 putative DMT superfam 100.0 4.2E-28 9.1E-33 219.4 23.1 241 4-282 46-288 (292)
3 TIGR00817 tpt Tpt phosphate/ph 100.0 3.1E-28 6.8E-33 221.2 19.3 231 25-283 57-297 (302)
4 TIGR00950 2A78 Carboxylate/Ami 100.0 1.5E-27 3.2E-32 212.0 22.2 216 29-274 42-259 (260)
5 PRK11453 O-acetylserine/cystei 100.0 2.4E-27 5.3E-32 215.1 22.4 223 36-282 61-290 (299)
6 PRK11689 aromatic amino acid e 100.0 1E-26 2.2E-31 210.6 20.0 223 36-282 63-290 (295)
7 PRK10532 threonine and homoser 99.9 3.2E-26 7E-31 207.1 22.8 220 28-283 66-285 (293)
8 TIGR03340 phn_DUF6 phosphonate 99.9 3.3E-26 7.2E-31 205.9 20.4 216 31-276 60-280 (281)
9 PRK15430 putative chlorampheni 99.9 1.5E-25 3.2E-30 203.1 18.5 208 37-279 76-285 (296)
10 PF06027 DUF914: Eukaryotic pr 99.9 9.6E-25 2.1E-29 197.8 23.6 237 29-286 75-312 (334)
11 PTZ00343 triose or hexose phos 99.9 3.7E-24 8E-29 198.0 21.7 223 30-280 111-349 (350)
12 COG0697 RhaT Permeases of the 99.9 2.7E-21 5.9E-26 173.6 22.6 217 33-280 69-288 (292)
13 TIGR00688 rarD rarD protein. T 99.9 7.5E-21 1.6E-25 168.8 16.5 186 33-254 70-255 (256)
14 COG5006 rhtA Threonine/homoser 99.9 2.1E-20 4.6E-25 158.2 17.0 227 23-284 61-287 (292)
15 KOG4510 Permease of the drug/m 99.8 8.7E-22 1.9E-26 167.7 3.5 229 34-281 98-327 (346)
16 KOG2765 Predicted membrane pro 99.8 1.2E-18 2.6E-23 155.2 16.6 236 29-283 154-394 (416)
17 PF08449 UAA: UAA transporter 99.8 1E-17 2.2E-22 152.3 21.8 238 29-284 60-302 (303)
18 TIGR00776 RhaT RhaT L-rhamnose 99.8 5.6E-18 1.2E-22 152.9 19.6 220 30-279 56-288 (290)
19 COG2962 RarD Predicted permeas 99.7 4.7E-15 1E-19 129.1 19.4 219 29-282 68-286 (293)
20 KOG1441 Glucose-6-phosphate/ph 99.7 3E-16 6.5E-21 140.9 11.0 229 29-286 79-314 (316)
21 KOG1580 UDP-galactose transpor 99.6 6.4E-15 1.4E-19 123.8 15.2 227 33-280 85-314 (337)
22 COG2510 Predicted membrane pro 99.6 9E-15 1.9E-19 111.7 12.4 134 142-278 5-138 (140)
23 KOG2766 Predicted membrane pro 99.6 1.4E-15 3E-20 129.2 4.7 222 31-277 76-297 (336)
24 PF00892 EamA: EamA-like trans 99.5 5.9E-14 1.3E-18 110.0 9.0 125 150-278 1-125 (126)
25 KOG1443 Predicted integral mem 99.5 6.9E-13 1.5E-17 115.8 16.2 225 26-278 76-314 (349)
26 PF04142 Nuc_sug_transp: Nucle 99.5 4.8E-12 1E-16 111.1 19.3 229 29-270 13-244 (244)
27 KOG2234 Predicted UDP-galactos 99.4 1.9E-10 4.2E-15 103.1 21.3 238 30-284 89-327 (345)
28 KOG1581 UDP-galactose transpor 99.3 5.1E-11 1.1E-15 104.2 15.7 235 29-283 79-317 (327)
29 KOG1444 Nucleotide-sugar trans 99.3 1.2E-10 2.5E-15 103.1 16.7 233 25-287 69-308 (314)
30 PRK15430 putative chlorampheni 99.2 3.7E-10 8E-15 102.4 13.5 138 137-278 5-144 (296)
31 PF06800 Sugar_transport: Suga 99.2 5E-09 1.1E-13 92.1 18.6 226 26-276 36-268 (269)
32 TIGR03340 phn_DUF6 phosphonate 99.1 1.7E-09 3.7E-14 97.3 15.5 133 142-279 3-135 (281)
33 PF03151 TPT: Triose-phosphate 99.1 1.3E-09 2.9E-14 88.7 12.7 138 141-279 1-153 (153)
34 PRK02971 4-amino-4-deoxy-L-ara 99.1 1.5E-09 3.2E-14 85.7 11.6 123 140-283 2-126 (129)
35 TIGR00688 rarD rarD protein. T 99.1 1.5E-09 3.3E-14 96.2 12.8 136 140-278 2-141 (256)
36 KOG1583 UDP-N-acetylglucosamin 99.0 1.4E-08 3.1E-13 87.8 15.2 243 26-280 60-315 (330)
37 PF13536 EmrE: Multidrug resis 99.0 6.8E-10 1.5E-14 86.0 4.6 76 29-111 30-106 (113)
38 PF00892 EamA: EamA-like trans 98.9 1.1E-09 2.5E-14 85.5 5.4 83 21-109 41-124 (126)
39 KOG1442 GDP-fucose transporter 98.9 1.5E-09 3.2E-14 93.7 6.1 235 28-288 97-336 (347)
40 KOG4314 Predicted carbohydrate 98.9 1.5E-08 3.3E-13 83.6 10.6 210 43-279 63-276 (290)
41 PLN00411 nodulin MtN21 family 98.9 2.9E-08 6.3E-13 92.1 13.7 140 139-280 12-157 (358)
42 KOG3912 Predicted integral mem 98.9 3.3E-08 7.2E-13 85.8 12.9 224 38-278 91-333 (372)
43 COG2510 Predicted membrane pro 98.9 1.8E-09 3.9E-14 82.8 4.1 77 28-110 62-138 (140)
44 KOG1582 UDP-galactose transpor 98.8 1.2E-08 2.5E-13 88.1 7.8 225 33-281 106-334 (367)
45 PRK11272 putative DMT superfam 98.8 1.2E-07 2.5E-12 85.9 14.5 132 142-280 10-142 (292)
46 TIGR00950 2A78 Carboxylate/Ami 98.8 5.7E-08 1.2E-12 86.1 11.7 119 152-279 1-119 (260)
47 PF13536 EmrE: Multidrug resis 98.8 3.2E-08 7E-13 76.6 8.3 108 175-283 3-110 (113)
48 PF05653 Mg_trans_NIPA: Magnes 98.7 3E-07 6.5E-12 83.2 13.6 227 37-282 53-295 (300)
49 COG5070 VRG4 Nucleotide-sugar 98.7 5.8E-08 1.3E-12 81.6 8.2 225 38-285 73-302 (309)
50 PRK11453 O-acetylserine/cystei 98.7 3.3E-07 7.2E-12 83.2 13.8 127 142-280 6-133 (299)
51 PRK11689 aromatic amino acid e 98.7 5.9E-07 1.3E-11 81.4 14.1 131 140-280 4-138 (295)
52 PTZ00343 triose or hexose phos 98.6 1E-06 2.2E-11 81.7 15.5 136 142-279 51-186 (350)
53 TIGR00817 tpt Tpt phosphate/ph 98.6 3.8E-07 8.3E-12 82.9 12.4 122 153-278 15-136 (302)
54 PRK15051 4-amino-4-deoxy-L-ara 98.6 2.7E-07 5.8E-12 71.1 9.3 67 212-278 42-108 (111)
55 TIGR00803 nst UDP-galactose tr 98.6 1.5E-07 3.3E-12 81.7 8.7 207 60-276 5-221 (222)
56 PRK13499 rhamnose-proton sympo 98.5 2.5E-05 5.4E-10 71.6 21.0 242 28-280 68-342 (345)
57 PRK15051 4-amino-4-deoxy-L-ara 98.4 9.6E-07 2.1E-11 68.0 7.8 68 37-110 40-108 (111)
58 COG2962 RarD Predicted permeas 98.3 7.7E-06 1.7E-10 71.9 11.7 141 139-282 6-147 (293)
59 COG0697 RhaT Permeases of the 98.3 1.9E-05 4.1E-10 70.6 14.4 141 139-283 6-147 (292)
60 PRK10452 multidrug efflux syst 98.3 1.1E-05 2.5E-10 62.5 10.1 69 213-281 36-105 (120)
61 PRK10532 threonine and homoser 98.2 3.2E-06 6.9E-11 76.5 7.9 96 4-111 185-281 (293)
62 TIGR00776 RhaT RhaT L-rhamnose 98.2 1.3E-05 2.8E-10 72.5 11.7 131 141-280 2-137 (290)
63 KOG2922 Uncharacterized conser 98.2 5.7E-06 1.2E-10 73.6 8.9 220 38-281 68-308 (335)
64 COG4975 GlcU Putative glucose 98.1 8.2E-07 1.8E-11 75.9 0.3 230 25-279 51-285 (288)
65 PF06027 DUF914: Eukaryotic pr 98.0 0.00015 3.3E-09 66.4 12.7 139 140-283 17-155 (334)
66 PRK09541 emrE multidrug efflux 97.9 0.00011 2.5E-09 56.2 10.0 68 214-281 37-105 (110)
67 PF08449 UAA: UAA transporter 97.8 0.00024 5.1E-09 64.7 12.1 129 152-286 12-143 (303)
68 PF05653 Mg_trans_NIPA: Magnes 97.8 4.9E-05 1.1E-09 68.9 7.4 121 136-280 3-123 (300)
69 KOG4510 Permease of the drug/m 97.8 3.7E-06 7.9E-11 72.8 -0.1 133 139-279 37-169 (346)
70 PRK02971 4-amino-4-deoxy-L-ara 97.8 6.2E-05 1.4E-09 59.4 6.7 69 36-110 50-121 (129)
71 PRK10650 multidrug efflux syst 97.8 0.00034 7.4E-09 53.4 10.1 63 215-277 43-106 (109)
72 COG2076 EmrE Membrane transpor 97.8 0.00027 5.8E-09 53.2 8.9 65 216-280 39-104 (106)
73 PRK11431 multidrug efflux syst 97.7 0.00057 1.2E-08 51.9 9.4 65 214-278 36-101 (105)
74 PF03151 TPT: Triose-phosphate 97.6 0.00012 2.5E-09 59.4 5.9 98 2-109 43-151 (153)
75 PF04657 DUF606: Protein of un 97.6 0.0012 2.7E-08 52.7 11.5 131 142-276 3-138 (138)
76 PF06800 Sugar_transport: Suga 97.5 0.0012 2.5E-08 58.5 10.7 80 205-285 44-128 (269)
77 PF00893 Multi_Drug_Res: Small 97.4 0.001 2.2E-08 49.5 7.9 56 215-270 37-93 (93)
78 PRK10650 multidrug efflux syst 97.4 0.00067 1.4E-08 51.8 6.6 60 44-109 46-106 (109)
79 PRK10452 multidrug efflux syst 97.3 0.00084 1.8E-08 52.2 6.4 66 39-110 35-102 (120)
80 PRK11431 multidrug efflux syst 97.3 0.0011 2.3E-08 50.3 6.6 63 41-109 36-100 (105)
81 COG2076 EmrE Membrane transpor 97.3 0.0008 1.7E-08 50.7 5.8 64 40-109 36-101 (106)
82 PRK09541 emrE multidrug efflux 97.2 0.0012 2.6E-08 50.6 6.6 65 40-110 36-102 (110)
83 COG3238 Uncharacterized protei 97.1 0.0096 2.1E-07 47.9 10.9 138 140-280 5-147 (150)
84 PRK13499 rhamnose-proton sympo 97.1 0.0049 1.1E-07 56.7 10.0 137 138-280 5-154 (345)
85 PF04142 Nuc_sug_transp: Nucle 96.8 0.0035 7.7E-08 55.1 7.0 67 218-284 28-94 (244)
86 COG5006 rhtA Threonine/homoser 96.7 0.0052 1.1E-07 53.3 6.6 94 3-108 185-279 (292)
87 PF00893 Multi_Drug_Res: Small 96.5 0.009 1.9E-07 44.3 5.9 56 40-101 35-92 (93)
88 COG4975 GlcU Putative glucose 96.5 0.0015 3.3E-08 56.3 1.9 132 141-282 3-139 (288)
89 PF10639 UPF0546: Uncharacteri 96.2 0.014 3E-07 44.7 5.9 109 147-277 3-112 (113)
90 PF07857 DUF1632: CEO family ( 95.7 0.074 1.6E-06 46.9 8.8 127 141-284 1-139 (254)
91 KOG1441 Glucose-6-phosphate/ph 95.7 0.0053 1.2E-07 55.8 1.7 125 151-278 28-154 (316)
92 PF06379 RhaT: L-rhamnose-prot 95.6 0.82 1.8E-05 41.8 15.3 242 28-280 68-341 (344)
93 PF10639 UPF0546: Uncharacteri 95.0 0.06 1.3E-06 41.3 5.2 64 40-109 47-112 (113)
94 KOG2234 Predicted UDP-galactos 94.7 1.7 3.6E-05 39.9 14.6 134 140-279 15-164 (345)
95 PF04657 DUF606: Protein of un 94.7 0.058 1.3E-06 43.1 4.8 69 34-108 65-138 (138)
96 KOG2922 Uncharacterized conser 94.3 0.011 2.5E-07 52.9 -0.1 128 135-286 16-143 (335)
97 KOG1444 Nucleotide-sugar trans 94.3 0.68 1.5E-05 41.8 11.0 118 155-278 27-148 (314)
98 TIGR00803 nst UDP-galactose tr 91.9 0.12 2.7E-06 44.5 2.7 63 40-108 159-221 (222)
99 KOG2765 Predicted membrane pro 91.9 0.09 2E-06 48.3 1.8 66 219-284 171-236 (416)
100 PF02694 UPF0060: Uncharacteri 91.8 4.4 9.5E-05 30.5 10.7 40 243-282 67-106 (107)
101 KOG1580 UDP-galactose transpor 91.5 0.29 6.2E-06 42.3 4.3 74 30-109 238-311 (337)
102 KOG4314 Predicted carbohydrate 90.3 0.1 2.3E-06 43.7 0.5 66 220-285 66-131 (290)
103 PRK02237 hypothetical protein; 89.9 1.3 2.8E-05 33.4 6.0 44 239-282 65-108 (109)
104 PF06379 RhaT: L-rhamnose-prot 88.4 3.2 6.8E-05 38.1 8.6 140 137-280 4-154 (344)
105 KOG1581 UDP-galactose transpor 85.7 1.2 2.6E-05 40.0 4.2 75 29-109 237-311 (327)
106 KOG4831 Unnamed protein [Funct 85.4 2 4.4E-05 32.2 4.7 59 219-277 64-123 (125)
107 PF03547 Mem_trans: Membrane t 84.7 34 0.00073 31.8 14.7 10 216-225 72-81 (385)
108 PF07168 Ureide_permease: Urei 83.7 0.79 1.7E-05 41.1 2.3 131 146-279 2-146 (336)
109 COG3238 Uncharacterized protei 83.5 2.1 4.5E-05 34.6 4.4 74 30-109 66-144 (150)
110 COG5070 VRG4 Nucleotide-sugar 82.5 2.8 6E-05 36.1 5.0 78 27-110 218-295 (309)
111 KOG3912 Predicted integral mem 82.3 1.3 2.8E-05 39.4 3.0 65 216-280 95-159 (372)
112 PF04342 DUF486: Protein of un 80.1 1.8 4E-05 32.4 2.7 31 248-278 77-107 (108)
113 KOG1443 Predicted integral mem 79.0 9.4 0.0002 34.5 7.3 123 158-281 34-158 (349)
114 COG3169 Uncharacterized protei 78.1 5.9 0.00013 29.3 4.8 32 248-279 84-115 (116)
115 PRK06638 NADH:ubiquinone oxido 76.8 45 0.00098 28.2 13.4 33 248-280 133-167 (198)
116 KOG1442 GDP-fucose transporter 76.1 2.9 6.2E-05 37.2 3.2 109 168-278 60-173 (347)
117 PF05977 MFS_3: Transmembrane 76.0 53 0.0011 32.3 12.5 41 238-278 351-391 (524)
118 KOG1583 UDP-N-acetylglucosamin 67.5 6.9 0.00015 34.9 3.6 68 220-287 77-145 (330)
119 TIGR02865 spore_II_E stage II 66.9 1.6E+02 0.0036 30.5 16.5 45 59-109 10-54 (764)
120 PF08507 COPI_assoc: COPI asso 64.4 14 0.00029 29.3 4.6 17 262-278 88-104 (136)
121 COG1742 Uncharacterized conser 61.5 15 0.00033 27.5 3.9 46 237-282 62-107 (109)
122 PLN00028 nitrate transmembrane 59.7 1.4E+02 0.0029 28.8 11.5 15 264-278 417-431 (476)
123 KOG4831 Unnamed protein [Funct 58.1 24 0.00053 26.6 4.5 61 43-109 62-123 (125)
124 PF06679 DUF1180: Protein of u 57.4 15 0.00033 30.1 3.7 7 286-292 124-130 (163)
125 PRK15049 L-asparagine permease 56.5 2E+02 0.0043 28.0 12.1 7 82-88 244-250 (499)
126 KOG1582 UDP-galactose transpor 56.1 41 0.0009 30.1 6.3 75 30-110 257-331 (367)
127 KOG2533 Permease of the major 55.5 89 0.0019 30.6 9.3 13 97-109 212-224 (495)
128 PF07698 7TM-7TMR_HD: 7TM rece 55.3 1.2E+02 0.0026 25.1 15.0 32 159-191 121-152 (194)
129 COG3086 RseC Positive regulato 54.2 12 0.00026 29.9 2.5 24 231-254 72-95 (150)
130 COG4858 Uncharacterized membra 54.0 1.1E+02 0.0023 25.8 8.1 22 211-232 132-153 (226)
131 PF07857 DUF1632: CEO family ( 53.9 1.4E+02 0.003 26.5 9.4 77 37-114 59-137 (254)
132 PF03348 Serinc: Serine incorp 52.7 2.2E+02 0.0047 27.3 12.4 58 210-280 247-304 (429)
133 PF01102 Glycophorin_A: Glycop 52.7 10 0.00022 29.5 1.9 11 265-275 75-85 (122)
134 PF05297 Herpes_LMP1: Herpesvi 52.4 4.7 0.0001 35.9 -0.0 63 218-280 119-185 (381)
135 PF03595 SLAC1: Voltage-depend 52.3 92 0.002 28.3 8.6 77 95-188 6-90 (330)
136 PRK11010 ampG muropeptide tran 52.0 2.3E+02 0.005 27.4 14.1 19 262-280 384-402 (491)
137 PF09656 PGPGW: Putative trans 50.1 54 0.0012 21.4 4.7 45 95-165 5-49 (53)
138 PRK13108 prolipoprotein diacyl 49.7 81 0.0017 30.5 7.9 24 259-282 254-277 (460)
139 PRK10489 enterobactin exporter 49.5 2.2E+02 0.0048 26.4 13.8 18 263-280 382-399 (417)
140 PRK11469 hypothetical protein; 47.1 13 0.00029 31.2 2.0 43 237-279 44-87 (188)
141 PF15102 TMEM154: TMEM154 prot 46.6 17 0.00038 29.0 2.4 21 265-285 67-87 (146)
142 PF04342 DUF486: Protein of un 46.5 21 0.00045 26.9 2.6 60 44-109 41-106 (108)
143 PF06123 CreD: Inner membrane 46.2 2.8E+02 0.006 26.7 11.8 125 141-280 301-425 (430)
144 PRK11902 ampG muropeptide tran 45.3 2.5E+02 0.0055 25.9 13.6 17 262-278 371-387 (402)
145 PF05297 Herpes_LMP1: Herpesvi 44.2 7.5 0.00016 34.6 0.0 64 38-107 26-93 (381)
146 PRK02237 hypothetical protein; 42.6 27 0.00058 26.5 2.7 38 68-111 68-105 (109)
147 TIGR02840 spore_YtaF putative 42.2 16 0.00034 31.2 1.7 45 234-278 34-80 (206)
148 PF04246 RseC_MucC: Positive r 41.1 16 0.00035 28.7 1.5 20 235-254 69-88 (135)
149 PF02694 UPF0060: Uncharacteri 41.1 25 0.00055 26.5 2.4 52 54-111 51-103 (107)
150 COG2271 UhpC Sugar phosphate p 40.8 2.6E+02 0.0056 26.9 9.5 44 241-285 167-211 (448)
151 COG3169 Uncharacterized protei 39.8 30 0.00064 25.7 2.5 32 72-109 82-113 (116)
152 PF15471 TMEM171: Transmembran 38.6 32 0.00069 30.5 2.9 25 261-285 161-185 (319)
153 PRK12437 prolipoprotein diacyl 36.8 1.2E+02 0.0026 27.0 6.5 45 237-281 208-257 (269)
154 PF07214 DUF1418: Protein of u 36.1 94 0.002 23.0 4.6 17 264-280 50-66 (96)
155 PF05961 Chordopox_A13L: Chord 34.6 52 0.0011 22.5 2.9 22 262-283 5-26 (68)
156 PF11044 TMEMspv1-c74-12: Plec 34.1 38 0.00083 21.1 2.0 15 260-274 3-17 (49)
157 PRK05122 major facilitator sup 34.1 3.7E+02 0.008 24.6 13.9 34 246-279 354-387 (399)
158 PRK10921 twin-arginine protein 33.9 64 0.0014 28.6 4.2 14 272-285 228-241 (258)
159 PF15345 TMEM51: Transmembrane 33.6 36 0.00077 29.5 2.5 22 265-286 67-88 (233)
160 COG1971 Predicted membrane pro 33.5 46 0.001 28.0 3.0 42 238-279 45-87 (190)
161 PRK10862 SoxR reducing system 33.4 22 0.00048 28.8 1.2 17 237-253 78-94 (154)
162 PF06570 DUF1129: Protein of u 33.2 2.9E+02 0.0064 23.3 8.1 23 140-162 179-201 (206)
163 PRK11715 inner membrane protei 32.6 4.6E+02 0.01 25.3 11.5 125 141-280 307-431 (436)
164 PF06570 DUF1129: Protein of u 32.3 1.1E+02 0.0023 26.0 5.3 29 32-60 145-173 (206)
165 PF06946 Phage_holin_5: Phage 31.9 2.1E+02 0.0046 21.1 6.3 56 225-280 22-81 (93)
166 PF12606 RELT: Tumour necrosis 31.1 64 0.0014 20.8 2.7 13 271-283 15-27 (50)
167 COG4657 RnfA Predicted NADH:ub 31.0 2.4E+02 0.0052 23.2 6.6 83 76-185 88-182 (193)
168 PF08693 SKG6: Transmembrane a 30.6 41 0.00088 20.6 1.7 19 265-283 21-39 (40)
169 PF15099 PIRT: Phosphoinositid 29.8 26 0.00057 27.2 0.9 17 207-223 57-73 (129)
170 PHA03049 IMV membrane protein; 29.7 68 0.0015 21.9 2.8 22 262-283 5-26 (68)
171 MTH00057 ND6 NADH dehydrogenas 28.4 3.5E+02 0.0076 22.6 12.1 32 248-279 132-165 (186)
172 TIGR00910 2A0307_GadC glutamat 27.5 5.9E+02 0.013 24.8 12.9 16 168-183 330-345 (507)
173 PF12292 DUF3624: Protein of u 27.4 1.8E+02 0.004 20.6 4.7 17 144-160 25-41 (77)
174 TIGR01167 LPXTG_anchor LPXTG-m 27.1 1E+02 0.0022 17.5 3.0 14 260-273 11-24 (34)
175 PF04277 OAD_gamma: Oxaloaceta 25.2 92 0.002 21.7 3.1 9 264-272 9-17 (79)
176 COG5336 Uncharacterized protei 25.1 2E+02 0.0043 21.9 4.8 27 244-270 56-83 (116)
177 PRK10862 SoxR reducing system 25.0 89 0.0019 25.3 3.3 28 54-81 69-96 (154)
178 COG3086 RseC Positive regulato 24.7 1.2E+02 0.0025 24.4 3.8 29 53-81 68-96 (150)
179 PF10754 DUF2569: Protein of u 24.3 3.2E+02 0.0069 21.8 6.5 29 136-164 117-145 (149)
180 TIGR00939 2a57 Equilibrative N 23.9 5.4E+02 0.012 24.7 9.0 23 144-166 50-72 (437)
181 PF14851 FAM176: FAM176 family 23.5 1.2E+02 0.0027 24.5 3.8 10 257-266 20-29 (153)
182 PRK10077 xylE D-xylose transpo 23.3 5.2E+02 0.011 24.3 8.9 7 226-232 388-394 (479)
183 PF11295 DUF3096: Protein of u 23.0 94 0.002 18.9 2.2 33 244-276 1-33 (39)
184 PF06781 UPF0233: Uncharacteri 22.8 2.2E+02 0.0047 20.7 4.6 56 205-280 31-86 (87)
185 TIGR00822 EII-Sor PTS system, 22.5 1.7E+02 0.0036 26.1 4.8 18 69-86 31-48 (265)
186 TIGR00544 lgt prolipoprotein d 22.4 2.7E+02 0.0059 24.9 6.2 23 259-281 246-268 (278)
187 PF02487 CLN3: CLN3 protein; 22.2 6.9E+02 0.015 23.8 10.5 71 35-111 4-108 (402)
188 PF11118 DUF2627: Protein of u 22.2 1.2E+02 0.0026 21.4 3.0 15 263-277 43-57 (77)
189 COG1742 Uncharacterized conser 22.0 77 0.0017 23.9 2.1 38 68-111 67-104 (109)
190 TIGR00905 2A0302 transporter, 21.9 7.1E+02 0.015 23.8 18.7 45 238-283 393-438 (473)
191 PF13440 Polysacc_synt_3: Poly 21.3 4.9E+02 0.011 21.7 10.1 40 212-251 99-138 (251)
192 PF08370 PDR_assoc: Plant PDR 21.1 37 0.0008 23.2 0.3 31 30-60 25-57 (65)
193 PF10225 DUF2215: Uncharacteri 21.0 5.7E+02 0.012 22.4 10.9 120 136-268 36-156 (249)
194 PF01350 Flavi_NS4A: Flaviviru 20.4 4.6E+02 0.0099 21.1 7.9 54 223-280 64-117 (144)
195 KOG2766 Predicted membrane pro 20.0 6.7 0.00014 34.6 -4.3 61 220-280 91-151 (336)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=3.4e-35 Score=270.82 Aligned_cols=271 Identities=38% Similarity=0.675 Sum_probs=210.3
Q ss_pred cchhhhcchhhhhhcCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHH-
Q 021377 3 SLSILMPSPVSFFFSVPSYST-ERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIF- 80 (313)
Q Consensus 3 ~~~~l~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~- 80 (313)
.+++++++|+.+++ +|+ +.++.+++++..+.+.|+++.+++.+++.|++|+++++++++.++.|+++.++++++
T Consensus 51 ~iA~l~Ll~~~~~~----~~~~~~~~~~~~~~~~l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~ 126 (358)
T PLN00411 51 LLASLLLLPSLFFT----NRSRSLPPLSVSILSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFR 126 (358)
T ss_pred HHHHHHHHHHHHHH----HHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHH
Confidence 35677788887665 442 234446788889999999987788899999999999999999999999999999999
Q ss_pred -----hhhcccccccccCcchhhHHhhhhhhhhheeecCCCCcCCCCC--CCC-CCcc-CCCCCccchhHHHHHHHHHHH
Q 021377 81 -----RLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSH--SGS-PRRL-LLSPQLSWILGGFFLAAEAFM 151 (313)
Q Consensus 81 -----~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~--~~~-~~~~-~~~~~~~~~~G~~~~l~s~~~ 151 (313)
++||++++ +++|++++++|+.++...+++.....+++ -+. .... ......++..|++++++++++
T Consensus 127 ~e~~~~~er~~~~------~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~ 200 (358)
T PLN00411 127 MEKVSFKERSSVA------KVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIF 200 (358)
T ss_pred hchhhhcccccHH------HHHHHHHHHHHHHHHHHccCcccccccccccccccccccccCCCcccHHHHHHHHHHHHHH
Confidence 59999999 99999999999998864334321110000 000 0000 011123446799999999999
Q ss_pred HHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhcc-CCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 021377 152 NSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVS-EPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSR 230 (313)
Q Consensus 152 ~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~ 230 (313)
|+.|++++|+..+++|+....++|++.++++...+.++..++ +...|....+.....++|.+++ +.++|.+|++++++
T Consensus 201 wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~-t~lay~lw~~~v~~ 279 (358)
T PLN00411 201 VSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAII-TSVYYVIHSWTVRH 279 (358)
T ss_pred HHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHH-HHHHHHHHHHHHhc
Confidence 999999999998888655677888888888877777665543 2233322222244567888875 67899999999999
Q ss_pred CCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcccccc
Q 021377 231 TGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKE 284 (313)
Q Consensus 231 ~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~~~~~ 284 (313)
.||++++.+.+++|+++++++++++||++++.+++|+++|+.|+++..+.+++|
T Consensus 280 ~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~ 333 (358)
T PLN00411 280 KGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANE 333 (358)
T ss_pred cCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999999999999999999999999999998766555
No 2
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.96 E-value=4.2e-28 Score=219.37 Aligned_cols=241 Identities=12% Similarity=0.097 Sum_probs=196.7
Q ss_pred chhhhcchhhhhhcCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhc-cccChhhHhHhhhhhHHHHHHHHHHHh
Q 021377 4 LSILMPSPVSFFFSVPSYSTERPQLTFSILCSFFLLSVFG-CSSQIFSFVGI-QYSSPTLSTAMLNLIPAFTFVLAIIFR 81 (313)
Q Consensus 4 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~al-~~~~~~~a~ii~~~~P~~~~l~a~~~~ 81 (313)
+++++++++.... ++ + ..+++++......|.++ ..++.+++.+. ++++++.++++.++.|+++.+++++ +
T Consensus 46 ~a~l~ll~~~~~~----~~--~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~ 117 (292)
T PRK11272 46 IAGILLLAFLLLR----GH--P-LPTLRQWLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-F 117 (292)
T ss_pred HHHHHHHHHHHHh----CC--C-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-h
Confidence 4566666665433 22 1 12567788888899988 78899999999 9999999999999999999999985 6
Q ss_pred hhcccccccccCcchhhHHhhhhhhhhheeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 021377 82 LEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQAL 161 (313)
Q Consensus 82 ~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~ 161 (313)
|||++++ +++|++++++|+.++.. +. .. +....|++++++++++||.|.+..||
T Consensus 118 ~e~~~~~------~~~~~~la~~Gv~ll~~--~~-----------------~~-~~~~~G~l~~l~a~~~~a~~~~~~~~ 171 (292)
T PRK11272 118 GIRTRKL------EWLGIAIGLAGIVLLNS--GG-----------------NL-SGNPWGAILILIASASWAFGSVWSSR 171 (292)
T ss_pred cccCchh------HHHHHHHHHHhHHHHhc--Cc-----------------cc-ccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999 99999999999998742 11 00 12246999999999999999999999
Q ss_pred HhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechh
Q 021377 162 ILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKP 241 (313)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~ 241 (313)
..++. +...+.+++.++++...++....+.+.. ...+...|..+++++++++.++|.+|++++++.++++++.+.+
T Consensus 172 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~ 247 (292)
T PRK11272 172 LPLPV--GMMAGAAEMLAAGVVLLIASLLSGERLT--ALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAY 247 (292)
T ss_pred cCCCc--chHHHHHHHHHHHHHHHHHHHHcCCccc--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 76543 4556778888888888777654432211 1123357889999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcccc
Q 021377 242 LAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKS 282 (313)
Q Consensus 242 ~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~~~ 282 (313)
++|+++++++++++||++++.+++|+++++.|+++..+.++
T Consensus 248 l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 248 VNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999876544
No 3
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.96 E-value=3.1e-28 Score=221.25 Aligned_cols=231 Identities=16% Similarity=0.158 Sum_probs=186.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhh
Q 021377 25 RPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIG 104 (313)
Q Consensus 25 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~ 104 (313)
+++.+++++...+..|++++.++.+.+.|++|++++.++++.++.|+++++++++++|||++++ ++.|++++++
T Consensus 57 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~ 130 (302)
T TIGR00817 57 RLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVG 130 (302)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHH
Confidence 4457788999999999999888999999999999999999999999999999999999999999 9999999999
Q ss_pred hhhhheeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhh--hchhHHHHHHHHHHHHHH
Q 021377 105 GAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILR--KFAAVLIIMFYLFFFNTI 182 (313)
Q Consensus 105 Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~--~~~~~~~~~~~~~~~~~~ 182 (313)
|+.+... + +......|++++++++++|+.|.++.||..+ +. |+...+.|++..+++
T Consensus 131 Gv~l~~~--~-------------------~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~ 188 (302)
T TIGR00817 131 GVALASD--T-------------------ELSFNWAGFLSAMISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLF 188 (302)
T ss_pred HHhhhcC--C-------------------cccccHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHH
Confidence 9987531 1 1122346999999999999999999999887 66 689999999999999
Q ss_pred HHHHHHHHhccCC-C--cccc-----cchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHH
Q 021377 183 LSTAFALIVVSEP-S--DWKL-----GLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVI 254 (313)
Q Consensus 183 ~~~~~~~~~~~~~-~--~~~~-----~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~ 254 (313)
.++|+....+... . ++.. .....+...+..+..+....+.++++++++.++++.+.+.+++|++++++++++
T Consensus 189 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~ 268 (302)
T TIGR00817 189 LLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILF 268 (302)
T ss_pred HHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhh
Confidence 9999887554211 0 0000 000011112233322222333456689999999999999999999999999999
Q ss_pred hcCccchhhHHHHHHHHHHHHHHhccccc
Q 021377 255 VGDAFCLGSLIGAMIIVAGFYAVMWGKSK 283 (313)
Q Consensus 255 ~ge~~~~~~~~G~~lii~g~~l~~~~~~~ 283 (313)
+||++++.+++|+++++.|++++.+.|++
T Consensus 269 lge~lt~~~~~G~~lil~Gv~l~~~~k~~ 297 (302)
T TIGR00817 269 FGTKISPQQVFGTGIAIAGVFLYSRVKAQ 297 (302)
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999876544
No 4
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.96 E-value=1.5e-27 Score=212.00 Aligned_cols=216 Identities=19% Similarity=0.264 Sum_probs=185.7
Q ss_pred CHHHHHHHHHHHHHH-HHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhh
Q 021377 29 TFSILCSFFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAF 107 (313)
Q Consensus 29 ~~~~~~~~~~~g~~~-~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ 107 (313)
+++++.+....|.++ .+++.+++.|++++++++++++.++.|+++.+++++++|||++++ +++|+.++++|+.
T Consensus 42 ~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~ 115 (260)
T TIGR00950 42 PLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAV 115 (260)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHH
Confidence 456777888888888 999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hheeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHHHHHHH
Q 021377 108 VVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTA 186 (313)
Q Consensus 108 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~ 186 (313)
++.. .+ +......|+.++++++++|+.+.+..|+..++.+ ++.....+++.++.+.+.+
T Consensus 116 li~~-~~-------------------~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~ 175 (260)
T TIGR00950 116 LLLS-DG-------------------NLSINPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLP 175 (260)
T ss_pred hhcc-CC-------------------cccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHH
Confidence 9842 11 1123357999999999999999999999887662 2345555778888888888
Q ss_pred HHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHH
Q 021377 187 FALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIG 266 (313)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G 266 (313)
..+..+++. .. +...+..+++.+++++.++|.+|++++++.++.+++.+.+++|+++++++++++||++++.+++|
T Consensus 176 ~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G 251 (260)
T TIGR00950 176 FAWFLGPNP-QA---LSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIG 251 (260)
T ss_pred HHHhcCCCC-Cc---chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 776543221 11 33477789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 021377 267 AMIIVAGF 274 (313)
Q Consensus 267 ~~lii~g~ 274 (313)
.++++.|+
T Consensus 252 ~~li~~g~ 259 (260)
T TIGR00950 252 GALIIAAV 259 (260)
T ss_pred HHHHHHhc
Confidence 99999886
No 5
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.96 E-value=2.4e-27 Score=215.06 Aligned_cols=223 Identities=19% Similarity=0.210 Sum_probs=177.7
Q ss_pred HHHHHHHH-HHHHHHHHHhccc-cChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhheeec
Q 021377 36 FFLLSVFG-CSSQIFSFVGIQY-SSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYK 113 (313)
Q Consensus 36 ~~~~g~~~-~~~~~~~~~al~~-~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~ 113 (313)
....|++. ..++.+++.++++ .+++.++++.++.|+++.+++++++|||++++ +++|++++++|+.++.. .
T Consensus 61 ~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~~-~ 133 (299)
T PRK11453 61 LLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLIE-D 133 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhcc-c
Confidence 34456655 6666788889988 58899999999999999999999999999999 99999999999998852 1
Q ss_pred CCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhchh--HHHHHHHHHHHHHHHHHHHHHHh
Q 021377 114 GPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAA--VLIIMFYLFFFNTILSTAFALIV 191 (313)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 191 (313)
+. .+......|++++++++++|+.|.+++|+..++.++ ......+.+..+.+.....+...
T Consensus 134 ~~-----------------~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (299)
T PRK11453 134 SL-----------------NGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLIL 196 (299)
T ss_pred cC-----------------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 10 011122469999999999999999999997665421 23445566666655444444433
Q ss_pred ccCC---CcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHH
Q 021377 192 VSEP---SDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAM 268 (313)
Q Consensus 192 ~~~~---~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~ 268 (313)
+++. .++...+...|..++|++++++.++|.+|++++++.++.+++.+.+++|+++++++++++||++++.+++|++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~ 276 (299)
T PRK11453 197 DGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAV 276 (299)
T ss_pred cCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 3221 1112223357999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccc
Q 021377 269 IIVAGFYAVMWGKS 282 (313)
Q Consensus 269 lii~g~~l~~~~~~ 282 (313)
++++|+++..+.++
T Consensus 277 lI~~gv~l~~~~~~ 290 (299)
T PRK11453 277 LIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHhcchh
Confidence 99999999887665
No 6
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.95 E-value=1e-26 Score=210.61 Aligned_cols=223 Identities=15% Similarity=0.143 Sum_probs=168.5
Q ss_pred HHHHHHHH-HHHHHHHHHhccc----cChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhhe
Q 021377 36 FFLLSVFG-CSSQIFSFVGIQY----SSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 110 (313)
Q Consensus 36 ~~~~g~~~-~~~~~~~~~al~~----~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 110 (313)
..+.+.++ ..++.+++.++++ +++++++++.++.|+++.+++++++|||++++ ++.|++++++|+.++.
T Consensus 63 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~ 136 (295)
T PRK11689 63 YLLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVL 136 (295)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhhee
Confidence 33445555 7888888887754 57788899999999999999999999999999 9999999999999985
Q ss_pred eecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 021377 111 FYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALI 190 (313)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (313)
. .+...... +..........|++++++++++||.|.++.||..++. ++.... . ..+.+.+.+....
T Consensus 137 ~-~~~~~~~~---------~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~-~~~~~~--~-~~~~~~l~~~~~~ 202 (295)
T PRK11689 137 G-GDNGLSLA---------ELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGK-NGITLF--F-ILTALALWIKYFL 202 (295)
T ss_pred c-CCccchhh---------hhhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCC-CchhHH--H-HHHHHHHHHHHHH
Confidence 2 11100000 0000111234699999999999999999999987776 465432 2 2333333333332
Q ss_pred hccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHH
Q 021377 191 VVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMII 270 (313)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~li 270 (313)
.+ +. ... .+...|..+++.++ +++++|.+|++++++.++++++.+.+++|+++++++++++||++++.+++|+++|
T Consensus 203 ~~-~~-~~~-~~~~~~~~l~~~~~-~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI 278 (295)
T PRK11689 203 SP-QP-AMV-FSLPAIIKLLLAAA-AMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMV 278 (295)
T ss_pred hc-Cc-ccc-CCHHHHHHHHHHHH-HHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 22 11 111 22346778888885 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccc
Q 021377 271 VAGFYAVMWGKS 282 (313)
Q Consensus 271 i~g~~l~~~~~~ 282 (313)
+.|+++..+.++
T Consensus 279 ~~gv~~~~~~~~ 290 (295)
T PRK11689 279 TAGSLLCWLATR 290 (295)
T ss_pred HHhHHHHhhhHh
Confidence 999988865443
No 7
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.95 E-value=3.2e-26 Score=207.11 Aligned_cols=220 Identities=9% Similarity=0.020 Sum_probs=175.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhh
Q 021377 28 LTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAF 107 (313)
Q Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ 107 (313)
.++|+++..+..|.+....+.++++++++++++.++++.++.|+++.+++. |++. +..++.++++|+.
T Consensus 66 ~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--------~~~~~~i~~~Gv~ 133 (293)
T PRK10532 66 FAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--------DFVWVVLAVLGLW 133 (293)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--------HHHHHHHHHHHHh
Confidence 456788888888887777888999999999999999999999999988873 5443 4456778899998
Q ss_pred hheeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 021377 108 VVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAF 187 (313)
Q Consensus 108 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (313)
++.. .+. +.+.....|++++++++++|+.|.+..|+..+++ ++... .+...++++.+.++
T Consensus 134 li~~-~~~-----------------~~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~-~~~~~-~~~~~~~~~~l~~~ 193 (293)
T PRK10532 134 FLLP-LGQ-----------------DVSHVDLTGAALALGAGACWAIYILSGQRAGAEH-GPATV-AIGSLIAALIFVPI 193 (293)
T ss_pred eeee-cCC-----------------CcccCChHHHHHHHHHHHHHHHHHHHHHHHhccC-CchHH-HHHHHHHHHHHHHH
Confidence 8742 111 0111234699999999999999999999988776 36655 46667777777776
Q ss_pred HHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHH
Q 021377 188 ALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGA 267 (313)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~ 267 (313)
....+. ... .+...+..++|+|++++.++|.+|++++++.++++++.+.+++|+++++++++++||++++.+++|+
T Consensus 194 ~~~~~~-~~~---~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~ 269 (293)
T PRK10532 194 GALQAG-EAL---WHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLAL 269 (293)
T ss_pred HHHccC-ccc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 654322 111 1223566678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccc
Q 021377 268 MIIVAGFYAVMWGKSK 283 (313)
Q Consensus 268 ~lii~g~~l~~~~~~~ 283 (313)
++|+.|+....+.+++
T Consensus 270 ~lIl~~~~~~~~~~~~ 285 (293)
T PRK10532 270 GAIIAASMGSTLTIRR 285 (293)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 9999999998766544
No 8
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.95 E-value=3.3e-26 Score=205.87 Aligned_cols=216 Identities=14% Similarity=0.086 Sum_probs=165.4
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhh
Q 021377 31 SILCSFFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 109 (313)
Q Consensus 31 ~~~~~~~~~g~~~-~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll 109 (313)
++++.....+.++ ..++.+++.|+++.++++++++.++.|+++.+++++++|||++++ +++|+.+++.|+.++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll 133 (281)
T TIGR03340 60 ATFWLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVL 133 (281)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHH
Confidence 3444444444444 999999999999999999999999999999999999999999999 999999999999988
Q ss_pred eeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHH----HHHHHHHHHHHHHHH
Q 021377 110 TFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVL----IIMFYLFFFNTILST 185 (313)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~----~~~~~~~~~~~~~~~ 185 (313)
.. ++. ......|..++++++++|+.|.+..|+..++.+ +. ..+.+.+..+++...
T Consensus 134 ~~-~~~-------------------~~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 192 (281)
T TIGR03340 134 GL-SRF-------------------AQHRRKAYAWALAAALGTAIYSLSDKAAALGVP-AFYSALGYLGIGFLAMGWPFL 192 (281)
T ss_pred hc-ccc-------------------cccchhHHHHHHHHHHHHHHhhhhccccccchh-cccccHHHHHHHHHHHHHHHH
Confidence 42 110 011235888999999999999999887654442 22 122233222212111
Q ss_pred HHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHH
Q 021377 186 AFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLI 265 (313)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~ 265 (313)
+.....+.. ... .....+..+++.+.+++.++|.+|++++++.++++++.+.+++|+++++++++++||++++.+++
T Consensus 193 ~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~i 269 (281)
T TIGR03340 193 LLYLKRHGR--SMF-PYARQILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLM 269 (281)
T ss_pred HHHHHHhcc--chh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHH
Confidence 211111111 111 12235667788888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 021377 266 GAMIIVAGFYA 276 (313)
Q Consensus 266 G~~lii~g~~l 276 (313)
|+++++.|+++
T Consensus 270 G~~lil~Gv~l 280 (281)
T TIGR03340 270 GVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHhHHh
Confidence 99999999875
No 9
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.94 E-value=1.5e-25 Score=203.12 Aligned_cols=208 Identities=14% Similarity=0.091 Sum_probs=159.1
Q ss_pred HHHHHHH-HHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhheeecCC
Q 021377 37 FLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGP 115 (313)
Q Consensus 37 ~~~g~~~-~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~ 115 (313)
...+.++ +.++.++++|++++++++++++.++.|+++.+++++++|||++++ ++.|++++++|+.++.. +
T Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~---~ 146 (296)
T PRK15430 76 LAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLW---T 146 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHH---H
Confidence 3356566 899999999999999999999999999999999999999999999 99999999999999842 1
Q ss_pred CCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhHHHHHHHHHHHHHHHHHHHHHHhccC
Q 021377 116 PLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKF-AAVLIIMFYLFFFNTILSTAFALIVVSE 194 (313)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (313)
. ++. ..+.++++++||.|.+..|+..++. .+....+.+.+.++.....+.. ..+
T Consensus 147 -----------------~-~~~----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 201 (296)
T PRK15430 147 -----------------F-GSL----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA---DSS 201 (296)
T ss_pred -----------------c-CCc----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc---cCC
Confidence 0 000 1468889999999999999875432 1234445555555544332211 111
Q ss_pred CCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHH
Q 021377 195 PSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGF 274 (313)
Q Consensus 195 ~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~ 274 (313)
...+...+...+..+++.|+ .+.++|.+|++++++.++++++.+.+++|+++++++++++||++++.+++|+++|+.|+
T Consensus 202 ~~~~~~~~~~~~~~~~~~g~-~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~ 280 (296)
T PRK15430 202 TSHMGQNPMSLNLLLIAAGI-VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVAL 280 (296)
T ss_pred cccccCCcHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 11111111112333444555 68899999999999999999999999999999999999999999999999999998887
Q ss_pred HHHhc
Q 021377 275 YAVMW 279 (313)
Q Consensus 275 ~l~~~ 279 (313)
.+...
T Consensus 281 ~v~~~ 285 (296)
T PRK15430 281 AIFVM 285 (296)
T ss_pred HHHHH
Confidence 77653
No 10
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.94 E-value=9.6e-25 Score=197.83 Aligned_cols=237 Identities=18% Similarity=0.237 Sum_probs=195.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhh
Q 021377 29 TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV 108 (313)
Q Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~l 108 (313)
.+++|+++++++++...++++...|++|++.+.++++..+.-+++++++++++|||+++. +++|+++++.|+.+
T Consensus 75 ~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~l 148 (334)
T PF06027_consen 75 LKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVL 148 (334)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhh
Confidence 456788899999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred heeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHH
Q 021377 109 VTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFA 188 (313)
Q Consensus 109 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (313)
+.. .+. .. ++++.++.+...|++++++|+++||.++++.++..++.+ .........++|.++..+..
T Consensus 149 v~~-sD~-~~----------~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~ 215 (334)
T PF06027_consen 149 VVV-SDV-LS----------GSDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQL 215 (334)
T ss_pred eee-ecc-cc----------cccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHH
Confidence 864 221 11 111123456689999999999999999999999999984 88888888899999888887
Q ss_pred HHhccC-CCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHH
Q 021377 189 LIVVSE-PSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGA 267 (313)
Q Consensus 189 ~~~~~~-~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~ 267 (313)
.+.+.+ .+..+.. ......+....++...-|.+....++..+|+..++-.....+++++++++++|+++++..++|.
T Consensus 216 ~ile~~~i~~~~w~--~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af 293 (334)
T PF06027_consen 216 AILERSGIESIHWT--SQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAF 293 (334)
T ss_pred HheehhhhhccCCC--hhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHH
Confidence 766542 2222222 2233333333446778888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccccc
Q 021377 268 MIIVAGFYAVMWGKSKEEK 286 (313)
Q Consensus 268 ~lii~g~~l~~~~~~~~~~ 286 (313)
++|++|.+++...++++++
T Consensus 294 ~lIiiG~vvy~~~~~~~~~ 312 (334)
T PF06027_consen 294 ALIIIGFVVYNLAESPEEE 312 (334)
T ss_pred HHHHHHhheEEccCCcccc
Confidence 9999999998876655443
No 11
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.93 E-value=3.7e-24 Score=197.95 Aligned_cols=223 Identities=15% Similarity=0.169 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhh
Q 021377 30 FSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 109 (313)
Q Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll 109 (313)
++++..++..|+++...+...+.|+++++++.++++.++.|+++++++++++|||++++ ++.++++++.|+.+.
T Consensus 111 ~~~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~ 184 (350)
T PTZ00343 111 KLFLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALA 184 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHhe
Confidence 45778889999999445666789999999999999999999999999999999999999 999999999999998
Q ss_pred eeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhc------hhHHHHHHHHHHHHHHH
Q 021377 110 TFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKF------AAVLIIMFYLFFFNTIL 183 (313)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~------~~~~~~~~~~~~~~~~~ 183 (313)
+. + + .+....|++++++++++|+.|+++.|+..++. .++.....++...+.++
T Consensus 185 ~~--~------------------~-~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 243 (350)
T PTZ00343 185 SV--K------------------E-LHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLI 243 (350)
T ss_pred ec--c------------------c-chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHH
Confidence 52 1 1 11235799999999999999999999987643 13555666778899999
Q ss_pred HHHHHHHhccCC--Cccc----ccchhHHHHHHHHHHHHHHHHHHHHHH----HhccCCceeeeechhhHHHHHHHHHHH
Q 021377 184 STAFALIVVSEP--SDWK----LGLDIGLVAVLYSAVIGTGFRVGLCTW----CLSRTGPLYVSMFKPLAIVFSIVMDVV 253 (313)
Q Consensus 184 ~~~~~~~~~~~~--~~~~----~~~~~~~~~ll~~g~~~s~~~~~l~~~----a~~~~~a~~~s~~~~~~pv~a~i~~~l 253 (313)
++|+....+... ..+. ......+..+++. ++.++++|.+|+. +++++++.+.+...+++|+++++++++
T Consensus 244 ~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l 322 (350)
T PTZ00343 244 SLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFK-IFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSII 322 (350)
T ss_pred HHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHH-HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHH
Confidence 999877554211 0110 0001122334554 5578999999995 999999999999999999999999999
Q ss_pred HhcCccchhhHHHHHHHHHHHHHHhcc
Q 021377 254 IVGDAFCLGSLIGAMIIVAGFYAVMWG 280 (313)
Q Consensus 254 ~~ge~~~~~~~~G~~lii~g~~l~~~~ 280 (313)
++||++++.+++|.++++.|++++.+.
T Consensus 323 ~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 323 IFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999998765
No 12
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.89 E-value=2.7e-21 Score=173.60 Aligned_cols=217 Identities=21% Similarity=0.377 Sum_probs=174.5
Q ss_pred HHHHHHHHHHH-HHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHH-HHhhhcccccccccCcchhhHHhhhhhhhhhe
Q 021377 33 LCSFFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAI-IFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 110 (313)
Q Consensus 33 ~~~~~~~g~~~-~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~-~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 110 (313)
+++..+.+.++ ..++.+++.++++++++.++++.++.|+++.+++. ++++||++++ ++.++++++.|+.++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~ 142 (292)
T COG0697 69 WLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLIL 142 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhee
Confidence 44556666666 99999999999999999999999999999999997 7779999999 9999999999999996
Q ss_pred eecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH-HHHHHHHHHHHHHHH
Q 021377 111 FYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMF-YLFFFNTILSTAFAL 189 (313)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 189 (313)
. .+.. ..+. ...|+.+.++++++|+.+.+..|+.. +. ++..... ++.. .........
T Consensus 143 ~-~~~~----------------~~~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~-~~~~~~~~~~~~--~~~~~~~~~ 200 (292)
T COG0697 143 L-GGGG----------------GGIL-SLLGLLLALAAALLWALYTALVKRLS-RL-GPVTLALLLQLL--LALLLLLLF 200 (292)
T ss_pred c-CCCc----------------chhH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CC-ChHHHHHHHHHH--HHHHHHHHH
Confidence 3 1110 0001 46899999999999999999999887 54 3555555 4433 122222222
Q ss_pred HhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHH
Q 021377 190 IVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMI 269 (313)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~l 269 (313)
... +. + .......+..+.+.|+++++++|.+|++++++.++..++.+.+++|+++++++++++||+++..+++|+++
T Consensus 201 ~~~-~~-~-~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~l 277 (292)
T COG0697 201 FLS-GF-G-APILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAAL 277 (292)
T ss_pred Hhc-cc-c-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 111 11 1 12223478889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc
Q 021377 270 IVAGFYAVMWG 280 (313)
Q Consensus 270 ii~g~~l~~~~ 280 (313)
++.|+.+...+
T Consensus 278 i~~g~~l~~~~ 288 (292)
T COG0697 278 VVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHhcc
Confidence 99999998766
No 13
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.86 E-value=7.5e-21 Score=168.78 Aligned_cols=186 Identities=9% Similarity=-0.013 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhheee
Q 021377 33 LCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY 112 (313)
Q Consensus 33 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~ 112 (313)
+..+...|++...++.+++.|++++++++++++.++.|+++++++++++|||++++ ++++++++++|+.++..
T Consensus 70 ~~~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~- 142 (256)
T TIGR00688 70 ILSLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIV- 142 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHH-
Confidence 44566777777999999999999999999999999999999999999999999999 99999999999998742
Q ss_pred cCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 021377 113 KGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVV 192 (313)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (313)
+. +.. ..++++++++|+.|.+..|+..++. ........ ........+......
T Consensus 143 -~~-------------------~~~----~~~~l~aa~~~a~~~i~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~ 195 (256)
T TIGR00688 143 -LK-------------------GSL----PWEALVLAFSFTAYGLIRKALKNTD--LAGFCLET-LSLMPVAIYYLLQTD 195 (256)
T ss_pred -Hc-------------------CCc----hHHHHHHHHHHHHHHHHHhhcCCCC--cchHHHHH-HHHHHHHHHHHHHhc
Confidence 10 000 1457889999999999999875432 22222211 111111111111111
Q ss_pred cCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHH
Q 021377 193 SEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVI 254 (313)
Q Consensus 193 ~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~ 254 (313)
........+...|..+++.|++ +.++|.+|++++++.++++++.+.+++|+++++++++.
T Consensus 196 -~~~~~~~~~~~~~~~l~~~g~~-t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 196 -FATVQQTNPFPIWLLLVLAGLI-TGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred -cCcccccCchhHHHHHHHHHHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 1111111122368888888885 88999999999999999999999999999999999764
No 14
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.86 E-value=2.1e-20 Score=158.25 Aligned_cols=227 Identities=12% Similarity=0.035 Sum_probs=186.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhh
Q 021377 23 TERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFAS 102 (313)
Q Consensus 23 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~ 102 (313)
..+.+++++++..+...|..-...|.++|.+++..|.+.+..+.++-|+..++++. -+.+ +...+.++
T Consensus 61 Pwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~s------Rr~~------d~vwvaLA 128 (292)
T COG5006 61 PWRRRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALLSS------RRLR------DFVWVALA 128 (292)
T ss_pred HHHhccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHHHhc------cchh------hHHHHHHH
Confidence 33456788999999999998899999999999999999999999999999888772 2333 67778889
Q ss_pred hhhhhhheeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Q 021377 103 IGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTI 182 (313)
Q Consensus 103 ~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~ 182 (313)
+.|+.++.- .++ +.+..+..|..+++.+..||+.|.+..||..+..+ ...-+...+.++++
T Consensus 129 vlGi~lL~p-~~~-----------------~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~-g~~g~a~gm~vAav 189 (292)
T COG5006 129 VLGIWLLLP-LGQ-----------------SVWSLDPVGVALALGAGACWALYIVLGQRAGRAEH-GTAGVAVGMLVAAL 189 (292)
T ss_pred HHHHHhhee-ccC-----------------CcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCC-CchHHHHHHHHHHH
Confidence 999998852 221 12234568999999999999999999999987664 67788899999999
Q ss_pred HHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchh
Q 021377 183 LSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLG 262 (313)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~ 262 (313)
+.+|+.....+ . ....+.-+..-+..+++++.+.|.+=..+++|.+....+.+..++|.++.+.+++++||.+++.
T Consensus 190 iv~Pig~~~ag-~---~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~ 265 (292)
T COG5006 190 IVLPIGAAQAG-P---ALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLI 265 (292)
T ss_pred HHhhhhhhhcc-h---hhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHH
Confidence 99998863322 1 1222224556678899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhcccccc
Q 021377 263 SLIGAMIIVAGFYAVMWGKSKE 284 (313)
Q Consensus 263 ~~~G~~lii~g~~l~~~~~~~~ 284 (313)
||.|+.+|+.+..-..+..+|+
T Consensus 266 qwlaI~~ViaAsaG~~lt~~~~ 287 (292)
T COG5006 266 QWLAIAAVIAASAGSTLTARKP 287 (292)
T ss_pred HHHHHHHHHHHHhccccccCCC
Confidence 9999999998887666554443
No 15
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.84 E-value=8.7e-22 Score=167.69 Aligned_cols=229 Identities=17% Similarity=0.175 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhheeec
Q 021377 34 CSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYK 113 (313)
Q Consensus 34 ~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~ 113 (313)
.+++++|+.|..+...+|+|++|++.+++++|..+.|.++.+++|.++|||.++. +.++..+.+.|+.++. +
T Consensus 98 ~~LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~------eaL~s~itl~GVVLIv--R 169 (346)
T KOG4510|consen 98 KWLILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKF------EALGSLITLLGVVLIV--R 169 (346)
T ss_pred EEEEeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHH------HHHHHHHhhheEEEEe--c
Confidence 3456789999888899999999999999999999999999999999999999999 9999999999999985 3
Q ss_pred CCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 021377 114 GPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVS 193 (313)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (313)
.+.+-+. ++++++.+.-.....|...++.+++..|--.++.|+..++. +-.....|..+++.+...+.....+
T Consensus 170 PpFlFG~-----~t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~-h~~msvsyf~~i~lV~s~I~~~~ig- 242 (346)
T KOG4510|consen 170 PPFLFGD-----TTEGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNA-HAIMSVSYFSLITLVVSLIGCASIG- 242 (346)
T ss_pred CCcccCC-----CccccccccccccCCchHHHHHhHhhhhhHHHHHHHhhccc-cEEEEehHHHHHHHHHHHHHHhhcc-
Confidence 3333222 11111111112334577888888888887778888887766 3555556666777666655544222
Q ss_pred CCCccccc-chhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHH
Q 021377 194 EPSDWKLG-LDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVA 272 (313)
Q Consensus 194 ~~~~~~~~-~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~ 272 (313)
.+..+ ...+|+..+.+|++ ..+++.+.+.++|+-.+..+++..+.+.+++.++.++++||.|+++.|.|+++++.
T Consensus 243 ---~~~lP~cgkdr~l~~~lGvf-gfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvs 318 (346)
T KOG4510|consen 243 ---AVQLPHCGKDRWLFVNLGVF-GFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVS 318 (346)
T ss_pred ---ceecCccccceEEEEEehhh-hhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeeh
Confidence 22222 23467788889984 56999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhccc
Q 021377 273 GFYAVMWGK 281 (313)
Q Consensus 273 g~~l~~~~~ 281 (313)
..+.....|
T Consensus 319 S~v~~a~~k 327 (346)
T KOG4510|consen 319 STVWVALKK 327 (346)
T ss_pred hHHHHHHHH
Confidence 777665433
No 16
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.81 E-value=1.2e-18 Score=155.22 Aligned_cols=236 Identities=21% Similarity=0.259 Sum_probs=186.3
Q ss_pred CHHHHHH-HHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhh
Q 021377 29 TFSILCS-FFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAF 107 (313)
Q Consensus 29 ~~~~~~~-~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ 107 (313)
+.++-.+ .+....+-+++++++..|+.+++++..+++.++.-+|+.+++.++.+||+++. |.+++++++.|++
T Consensus 154 t~~~~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GVi 227 (416)
T KOG2765|consen 154 TATQTAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVI 227 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEE
Confidence 3334433 44445555999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hheeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhch---hHHHHHHHHHHHHHHHH
Q 021377 108 VVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA---AVLIIMFYLFFFNTILS 184 (313)
Q Consensus 108 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~---~~~~~~~~~~~~~~~~~ 184 (313)
++...+.. + .++....+...|+++++++++.||.|.++.||...+.. |...+-.+.-++..+++
T Consensus 228 iVt~~~s~--~-----------~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllll 294 (416)
T KOG2765|consen 228 IVTMGDSK--Q-----------NSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLL 294 (416)
T ss_pred EEEecccc--c-----------cccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHH
Confidence 99752221 1 11233445678999999999999999999998765541 23333334444445555
Q ss_pred HHHHHHhcc-CCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhh
Q 021377 185 TAFALIVVS-EPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGS 263 (313)
Q Consensus 185 ~~~~~~~~~-~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~ 263 (313)
.|..++... ..+.++.+.......++..+.+++.++-++|.+|.-..++.++++-+.++.+.+++.+.++=|..+++.+
T Consensus 295 wP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~ 374 (416)
T KOG2765|consen 295 WPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALY 374 (416)
T ss_pred hHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHH
Confidence 544433221 3456666655566677788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccc
Q 021377 264 LIGAMIIVAGFYAVMWGKSK 283 (313)
Q Consensus 264 ~~G~~lii~g~~l~~~~~~~ 283 (313)
++|.+.|+.|.+++.+..+.
T Consensus 375 iiGsi~Ifv~Fv~vn~~~~~ 394 (416)
T KOG2765|consen 375 IIGSIPIFVGFVIVNISSEN 394 (416)
T ss_pred HHHHHHHHHHHhheeccccc
Confidence 99999999999998765443
No 17
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.80 E-value=1e-17 Score=152.27 Aligned_cols=238 Identities=16% Similarity=0.205 Sum_probs=189.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhh
Q 021377 29 TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV 108 (313)
Q Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~l 108 (313)
+++.++.++..+++..++..+...+++|+|...-.++..+.|+++++++.+++|+|++++ ++.++++..+|+++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~------~~~~v~li~~Gv~~ 133 (303)
T PF08449_consen 60 RKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRR------QYLSVLLITIGVAI 133 (303)
T ss_pred CcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHH------HHHHHHHHHhhHhe
Confidence 344466777888888999999999999999999999999999999999999999999999 99999999999999
Q ss_pred heeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHHHHHHHH
Q 021377 109 VTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAF 187 (313)
Q Consensus 109 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 187 (313)
....+....+ .++.....+..|+++.+++.++.+...+.++|..++++ ++...++|...++.+...+.
T Consensus 134 ~~~~~~~~~~-----------~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~ 202 (303)
T PF08449_consen 134 FTLSDSSSSS-----------SSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLIL 202 (303)
T ss_pred eeeccccccc-----------ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence 8652211110 01111222334999999999999999999999876543 57899999999999988887
Q ss_pred HHH--hccCCCc--ccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhh
Q 021377 188 ALI--VVSEPSD--WKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGS 263 (313)
Q Consensus 188 ~~~--~~~~~~~--~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~ 263 (313)
... .++..+. +....+..+..++...+ +..+++...++..++.++...+.+..++-+++++++++++|+++++.+
T Consensus 203 ~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~-~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~ 281 (303)
T PF08449_consen 203 LFLLPTGEFRSAIRFISAHPSVLLYLLLFSL-TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQ 281 (303)
T ss_pred HHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHH
Confidence 765 2221111 11111223444444444 667888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccc
Q 021377 264 LIGAMIIVAGFYAVMWGKSKE 284 (313)
Q Consensus 264 ~~G~~lii~g~~l~~~~~~~~ 284 (313)
|+|.++++.|..+..+.|+|+
T Consensus 282 ~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 282 WIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HHHHHHhHHHHHHHHHhhccC
Confidence 999999999999998877664
No 18
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.80 E-value=5.6e-18 Score=152.88 Aligned_cols=220 Identities=13% Similarity=0.136 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhh-hhHHHHHHHHHHHhhhcccccccccCcc----hhhHHhhhh
Q 021377 30 FSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAK----SLGTFASIG 104 (313)
Q Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~-~~P~~~~l~a~~~~~E~~~~~~~~~~~~----~~g~~l~~~ 104 (313)
++.+..-++.|.+-..++++++.++++++.+.+..+.+ +.|++..+.+.+++|||.+++ + ++|+++.++
T Consensus 56 ~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~------~~~~~~~g~~l~l~ 129 (290)
T TIGR00776 56 LSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSI------QTLLGLLALILIII 129 (290)
T ss_pred cHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchH------HHHHHHHHHHHHHH
Confidence 33444455556655889999999999999999999988 888999999999999999999 8 999999999
Q ss_pred hhhhheeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH---HHH
Q 021377 105 GAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFF---FNT 181 (313)
Q Consensus 105 Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~---~~~ 181 (313)
|+.++...++... ++++..+...|.+++++++++|+.|.+..|+. ++ +|....+.++. .++
T Consensus 130 G~~l~~~~~~~~~-------------~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~-~~~~~~~~~~~g~~~~~ 193 (290)
T TIGR00776 130 GVYLTSRSKDKSA-------------GIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GV-DGLSVLLPQAIGMVIGG 193 (290)
T ss_pred hHheEEecccccc-------------ccccccchhhHHHHHHHHHHHHHHHHHHHHHc--CC-CcceehhHHHHHHHHHH
Confidence 9988853111100 00000234679999999999999999999976 35 57777544444 333
Q ss_pred HHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhc-cCCceeeeechhhHHHHHHHHHHHHhcCccc
Q 021377 182 ILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLS-RTGPLYVSMFKPLAIVFSIVMDVVIVGDAFC 260 (313)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~-~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~ 260 (313)
++..+.. .. . .++ .....+..++ .|++ .+++|.+|..+.+ +.++++.+.+...+|+.+++++++++||..+
T Consensus 194 ~~~~~~~--~~-~-~~~--~~~~~~~~~~-~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~ 265 (290)
T TIGR00776 194 IIFNLGH--IL-A-KPL--KKYAILLNIL-PGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKT 265 (290)
T ss_pred HHHHHHH--hc-c-cch--HHHHHHHHHH-HHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 3333221 00 0 112 1222344444 8887 7999999999999 9999999999999999999999999999999
Q ss_pred hhhH----HHHHHHHHHHHHHhc
Q 021377 261 LGSL----IGAMIIVAGFYAVMW 279 (313)
Q Consensus 261 ~~~~----~G~~lii~g~~l~~~ 279 (313)
+.++ +|.++++.|+.+...
T Consensus 266 ~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 266 KREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred cceeehhHHHHHHHHHHHHHHhc
Confidence 9999 999999999988654
No 19
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.68 E-value=4.7e-15 Score=129.08 Aligned_cols=219 Identities=12% Similarity=0.087 Sum_probs=175.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhh
Q 021377 29 TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV 108 (313)
Q Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~l 108 (313)
++|.+..+.+.+++-..+...+.+|.+.-..-+++.=++..|++.++++.+++|||+++. |+++++++.+||..
T Consensus 68 ~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~------Q~iAV~lA~~GV~~ 141 (293)
T COG2962 68 QPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRL------QWIAVGLAAAGVLI 141 (293)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHH------HHHHHHHHHHHHHH
Confidence 456677777777777999999999999999999999999999999999999999999999 99999999999998
Q ss_pred heeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHH
Q 021377 109 VTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFA 188 (313)
Q Consensus 109 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (313)
.+...|. .. ..++.=+++|+.|..+.|+. +. |..+..+.-++.-....+...
T Consensus 142 ~~~~~g~--------------------lp-----wval~la~sf~~Ygl~RK~~--~v-~a~~g~~lE~l~l~p~al~yl 193 (293)
T COG2962 142 QTWLLGS--------------------LP-----WVALALALSFGLYGLLRKKL--KV-DALTGLTLETLLLLPVALIYL 193 (293)
T ss_pred HHHHcCC--------------------Cc-----HHHHHHHHHHHHHHHHHHhc--CC-chHHhHHHHHHHHhHHHHHHH
Confidence 8652121 11 34556678999999987765 33 356666666666555555554
Q ss_pred HHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHH
Q 021377 189 LIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAM 268 (313)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~ 268 (313)
+..+.+...........+..+...|+ .|++...+|..+-++++-+..+.+.|.+|..-.+++++++||+++..+++..+
T Consensus 194 ~~l~~~~~~~~~~~~~~~~LLv~aG~-vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~ 272 (293)
T COG2962 194 LFLADSGQFLQQNANSLWLLLVLAGL-VTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFA 272 (293)
T ss_pred HHHhcCchhhhcCCchHHHHHHHhhH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 44432221012123346777778888 67899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccc
Q 021377 269 IIVAGFYAVMWGKS 282 (313)
Q Consensus 269 lii~g~~l~~~~~~ 282 (313)
+|-+|+.++....-
T Consensus 273 ~IW~aL~l~~~d~l 286 (293)
T COG2962 273 FIWLALALFSIDGL 286 (293)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999876543
No 20
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.67 E-value=3e-16 Score=140.92 Aligned_cols=229 Identities=16% Similarity=0.197 Sum_probs=186.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhh
Q 021377 29 TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV 108 (313)
Q Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~l 108 (313)
++..+..++.+|++.+++..+...++.+.+++..+++..++|++++++++++.+|+.++. .+..++....|+.+
T Consensus 79 ~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~------~~lsL~piv~GV~i 152 (316)
T KOG1441|consen 79 SKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSM------TYLSLLPIVFGVAI 152 (316)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcce------EEEEEEEeeeeEEE
Confidence 445688888999999999999999999999999999999999999999999999999999 99999999999998
Q ss_pred heeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhh----hchhHHHHHHHHHHHHHHHH
Q 021377 109 VTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILR----KFAAVLIIMFYLFFFNTILS 184 (313)
Q Consensus 109 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~----~~~~~~~~~~~~~~~~~~~~ 184 (313)
-+. .+..-...|...++++.+..+..+++.|+..+ +. |++....|+.-++.+.+
T Consensus 153 as~---------------------~e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~-~~~~ll~y~ap~s~~~L 210 (316)
T KOG1441|consen 153 ASV---------------------TELSFNLFGFISAMISNLAFALRNILSKKLLTSKGESL-NSMNLLYYTAPISLIFL 210 (316)
T ss_pred eee---------------------ccccccHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-CchHHHHHhhhHHHHHH
Confidence 753 11223457999999999999999999999874 24 68999999999999988
Q ss_pred H-HHHHHhccCCC-cccc-cchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccch
Q 021377 185 T-AFALIVVSEPS-DWKL-GLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCL 261 (313)
Q Consensus 185 ~-~~~~~~~~~~~-~~~~-~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~ 261 (313)
+ |+....+++.. .+.. .+.......++.. ++...-....+..+.+++|.+.+..+.+.-++.++.+++++++++++
T Consensus 211 l~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-v~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~ 289 (316)
T KOG1441|consen 211 LIPFLDYVEGNKFVGFLTAPWFVTFLILLLNS-VLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTF 289 (316)
T ss_pred hcchHhhhcccceeeeeccccchhhHHHHHHH-HHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCch
Confidence 8 87765554322 0000 1111222222222 23444445556889999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhcccccccc
Q 021377 262 GSLIGAMIIVAGFYAVMWGKSKEEK 286 (313)
Q Consensus 262 ~~~~G~~lii~g~~l~~~~~~~~~~ 286 (313)
.+..|.++.++|++++.+.|.++++
T Consensus 290 ~n~~G~~iai~Gv~~Y~~~k~~~~~ 314 (316)
T KOG1441|consen 290 LNALGYAIAILGVFLYSRAKLKEKK 314 (316)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhc
Confidence 9999999999999999988877654
No 21
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.65 E-value=6.4e-15 Score=123.82 Aligned_cols=227 Identities=15% Similarity=0.159 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhheee
Q 021377 33 LCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY 112 (313)
Q Consensus 33 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~ 112 (313)
-+.+..++.-..+++.....|+||.|=-...+-.+.-|+-+++++.++.+++.+|+ +...++..+.|+++.. +
T Consensus 85 ~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValFm-Y 157 (337)
T KOG1580|consen 85 TKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALFM-Y 157 (337)
T ss_pred chHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHH------HHHHHHHHHHHHHHhh-c
Confidence 44455555555889999999999999888888899999999999999999999999 9999999999999984 5
Q ss_pred cCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhHHHHHHHHHHHHHHHHHHHHHHh
Q 021377 113 KGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKF-AAVLIIMFYLFFFNTILSTAFALIV 191 (313)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (313)
+++...+ ..+.....|.++.+++...-++....+.|...++ ++...++++..+.+.+.+..-.++.
T Consensus 158 K~~Kv~g-------------~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfT 224 (337)
T KOG1580|consen 158 KENKVGG-------------AEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFT 224 (337)
T ss_pred cccccCC-------------CcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheeh
Confidence 6553332 2345567899999999999999999999887664 2567899999999988777665554
Q ss_pred ccCCC--cccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHH
Q 021377 192 VSEPS--DWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMI 269 (313)
Q Consensus 192 ~~~~~--~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~l 269 (313)
++-++ .+...-+..|+-+..+++ ++.+++.+.+.-+...+|...|++....-.++++.++++++.+++.+||+|..+
T Consensus 225 GElweF~yF~~RhP~~~~~l~l~ai-~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvl 303 (337)
T KOG1580|consen 225 GELWEFFYFVQRHPYVFWDLTLLAI-ASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVL 303 (337)
T ss_pred hhHHHHHHHHHhccHHHHHHHHHHH-HHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHH
Confidence 43222 222222335666777777 888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc
Q 021377 270 IVAGFYAVMWG 280 (313)
Q Consensus 270 ii~g~~l~~~~ 280 (313)
++.++..-...
T Consensus 304 VF~aL~~D~~~ 314 (337)
T KOG1580|consen 304 VFSALTADVVD 314 (337)
T ss_pred HHHHhhhHhhc
Confidence 99998876543
No 22
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.62 E-value=9e-15 Score=111.66 Aligned_cols=134 Identities=14% Similarity=0.110 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHH
Q 021377 142 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRV 221 (313)
Q Consensus 142 ~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~ 221 (313)
.++++++++.+++..++.|-..++. ||..-++.+.++....+..+....+ ++.......+..|..+...|+ ++++++
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~v-dp~~At~IRtiVi~~~l~~v~~~~g-~~~~~~~~~~k~~lflilSGl-a~glsw 81 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGV-DPDFATTIRTIVILIFLLIVLLVTG-NWQAGGEIGPKSWLFLILSGL-AGGLSW 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHHHHHHHHhcC-ceecccccCcceehhhhHHHH-HHHHHH
Confidence 5899999999999999999998888 7999999999998888887776554 332222224568999999996 899999
Q ss_pred HHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHh
Q 021377 222 GLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM 278 (313)
Q Consensus 222 ~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~ 278 (313)
.+|++|++...++++.++.-+.|+++++++++++||+++..+++|.++|++|..+..
T Consensus 82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 999999999999999999999999999999999999999999999999999987754
No 23
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.58 E-value=1.4e-15 Score=129.20 Aligned_cols=222 Identities=15% Similarity=0.138 Sum_probs=174.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhhe
Q 021377 31 SILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 110 (313)
Q Consensus 31 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 110 (313)
..|.++++++++..=++++...|.||++-..++.+---.-..+.+++|+++|-|.++. ++.|+.+++.|+.++.
T Consensus 76 ~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlm------ki~gV~iCi~GvvmvV 149 (336)
T KOG2766|consen 76 AKWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLM------KISGVVICIVGVVMVV 149 (336)
T ss_pred HHHHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhh------eeeeEEeEecceEEEE
Confidence 4466678888887888889999999999999999987766777889999999999999 9999999999999986
Q ss_pred eecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 021377 111 FYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALI 190 (313)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (313)
+ ++-.- .+.+++.+-.+|+.+.++++.+||..++....+.++. |-...+....++|+++..+-...
T Consensus 150 ~-sDV~a------------gd~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~-d~~elm~~lgLfGaIIsaIQ~i~ 215 (336)
T KOG2766|consen 150 F-SDVHA------------GDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNA-DRVELMGFLGLFGAIISAIQFIF 215 (336)
T ss_pred E-eeecc------------ccccCCCCCccCcEEEEecceeeeeccccHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHhh
Confidence 4 22211 1112345567899999999999999999999998888 58888889999999998888433
Q ss_pred hccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHH
Q 021377 191 VVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMII 270 (313)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~li 270 (313)
..++.. ...++......+. ..++..+-|.+.-..++..+++..++-....-.+++++ -.||-..+|...+..+.+
T Consensus 216 ~~~~~~--tl~w~~~i~~yl~-f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i 290 (336)
T KOG2766|consen 216 ERHHVS--TLHWDSAIFLYLR-FALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATI 290 (336)
T ss_pred hcccee--eEeehHHHHHHHH-HHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHH
Confidence 222222 2222222222222 33456666777777899999999999999999999888 678888999999999999
Q ss_pred HHHHHHH
Q 021377 271 VAGFYAV 277 (313)
Q Consensus 271 i~g~~l~ 277 (313)
..|.+++
T Consensus 291 ~~GliiY 297 (336)
T KOG2766|consen 291 ATGLIIY 297 (336)
T ss_pred HHhhEEe
Confidence 9998887
No 24
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.52 E-value=5.9e-14 Score=110.05 Aligned_cols=125 Identities=22% Similarity=0.367 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021377 150 FMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLS 229 (313)
Q Consensus 150 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~ 229 (313)
++|+.+.+..|+..++. |+....++++..+++ ..+...+..... ....+...+...++.+++++.+++.+++++++
T Consensus 1 ~~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKI-SPLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred ceeeeHHHHHHHHhccC-CHHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 47899999999999998 599999999999998 666655444321 22223347778889999889999999999999
Q ss_pred cCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHh
Q 021377 230 RTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM 278 (313)
Q Consensus 230 ~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~ 278 (313)
+.+++.++.+.+++|+++.++++++++|++++.+++|+++++.|+++..
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998764
No 25
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.52 E-value=6.9e-13 Score=115.77 Aligned_cols=225 Identities=20% Similarity=0.230 Sum_probs=172.6
Q ss_pred CCCCHHHH-HHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhh
Q 021377 26 PQLTFSIL-CSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIG 104 (313)
Q Consensus 26 ~~~~~~~~-~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~ 104 (313)
..+++++. .+....|+..++.-.+..++++|++.+.-++..++.++|+.+++.++.-||++|. -..-+++..+
T Consensus 76 ~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~------L~l~v~lI~~ 149 (349)
T KOG1443|consen 76 VVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWA------LVLIVLLIAV 149 (349)
T ss_pred cCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHH------HHHHHHHHhh
Confidence 34566664 4566778887999999999999999999999999999999999999999999999 7777888888
Q ss_pred hhhhheeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhch----hHHHHHHHHHHHH
Q 021377 105 GAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA----AVLIIMFYLFFFN 180 (313)
Q Consensus 105 Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~----~~~~~~~~~~~~~ 180 (313)
|+.+.+. ++. +-...|..+...++++-++...+.+...++.| +|...+....-..
T Consensus 150 Glflft~-KsT--------------------qf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M 208 (349)
T KOG1443|consen 150 GLFLFTY-KST--------------------QFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWM 208 (349)
T ss_pred heeEEEe-ccc--------------------ceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHH
Confidence 8888864 332 33457888888888888887777777766543 6788888888888
Q ss_pred HHHHHHHHHHhccCCC-----cccccch-hHHHHHHHHHHHHHHHHHHH---HHHHhccCCceeeeechhhHHHHHHHHH
Q 021377 181 TILSTAFALIVVSEPS-----DWKLGLD-IGLVAVLYSAVIGTGFRVGL---CTWCLSRTGPLYVSMFKPLAIVFSIVMD 251 (313)
Q Consensus 181 ~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~ll~~g~~~s~~~~~l---~~~a~~~~~a~~~s~~~~~~pv~a~i~~ 251 (313)
.+.++|..+.+|+... .+..... ..+..+.+++. +..+++.+ -+..+.+++....++.....-+-+.+++
T Consensus 209 ~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l-~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la 287 (349)
T KOG1443|consen 209 SIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISL-GGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLA 287 (349)
T ss_pred HHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHH-HHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHH
Confidence 8888888888876332 1111111 11222222222 22233322 2356789999999999999999999999
Q ss_pred HHHhcCccchhhHHHHHHHHHHHHHHh
Q 021377 252 VVIVGDAFCLGSLIGAMIIVAGFYAVM 278 (313)
Q Consensus 252 ~l~~ge~~~~~~~~G~~lii~g~~l~~ 278 (313)
..+.+|.++...+.|..+...|+....
T Consensus 288 ~ii~~d~ls~lN~~Gl~i~~agi~~~~ 314 (349)
T KOG1443|consen 288 IIILKDQLSLLNWLGLAICLAGILLHR 314 (349)
T ss_pred HHHhhcchhhhHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998873
No 26
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.48 E-value=4.8e-12 Score=111.12 Aligned_cols=229 Identities=15% Similarity=0.207 Sum_probs=168.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhh
Q 021377 29 TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV 108 (313)
Q Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~l 108 (313)
++|+.+++.+-+++.+..+.+.|.++++++++.-.++.++-.++|++++.+++|+|++++ +|.++.+.+.|+.+
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~l 86 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVVL 86 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHhe
Confidence 467888888889999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred heeecCCCCcCCCCCCCCCCcc-CCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHHHHHHH
Q 021377 109 VTFYKGPPLIGELSHSGSPRRL-LLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTA 186 (313)
Q Consensus 109 l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~ 186 (313)
+-. .+. ... ++++.... .+....+...|.++.++++++-+...+...|..|+.+ +....+.....+|.++.++
T Consensus 87 v~~-~~~-~~~---~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~ 161 (244)
T PF04142_consen 87 VQL-SSS-QSS---DNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLL 161 (244)
T ss_pred eec-CCc-ccc---ccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Confidence 853 111 110 00000111 1112345578999999999999999999999887752 3566666767777776666
Q ss_pred HHHHhccC-CCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHH
Q 021377 187 FALIVVSE-PSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLI 265 (313)
Q Consensus 187 ~~~~~~~~-~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~ 265 (313)
.....+.+ ..+.... ..+-...+..++...++=.+....+|+.+...=+....+..+.+.+.+++++|.+++....+
T Consensus 162 ~~~~~~~~~~~~~g~f--~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~l 239 (244)
T PF04142_consen 162 ALLLSDGSAISESGFF--HGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLL 239 (244)
T ss_pred HHhcccccccccCCch--hhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhh
Confidence 54433221 1111000 11222233333344444455667789999998899999999999999999999999999999
Q ss_pred HHHHH
Q 021377 266 GAMII 270 (313)
Q Consensus 266 G~~li 270 (313)
|..++
T Consensus 240 g~~~V 244 (244)
T PF04142_consen 240 GAALV 244 (244)
T ss_pred heecC
Confidence 98653
No 27
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.36 E-value=1.9e-10 Score=103.13 Aligned_cols=238 Identities=12% Similarity=0.115 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhh
Q 021377 30 FSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 109 (313)
Q Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll 109 (313)
+++.++..+-+++.++.+.++|.++.+.+++..++...+--+-|+++..+++++|+++. +|.++++.++|+.++
T Consensus 89 ~~~~lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~v 162 (345)
T KOG2234|consen 89 PRETLKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALV 162 (345)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHH
Confidence 45677777778888777789999999999999999999999999999999999999999 999999999999998
Q ss_pred eeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHHHHHHHHH
Q 021377 110 TFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFA 188 (313)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 188 (313)
-. ..+ . +.++ .......+...|....+.+.+.-+...+...+.+++-. +.+..+.-..++|.++.+...
T Consensus 163 Q~-~~~--~-----~~~a--~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~ 232 (345)
T KOG2234|consen 163 QL-PSL--S-----PTGA--KSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTI 232 (345)
T ss_pred hc-cCC--C-----CCCc--cCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 42 111 0 0000 01233456678999999999999999999988886532 345555555566666555554
Q ss_pred HHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHH
Q 021377 189 LIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAM 268 (313)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~ 268 (313)
+..+.+...|... -..|-...+.-++..+++=.+-...+++.+-..=+....+..+++.+.++.++|-++|....+|..
T Consensus 233 ~~~d~~~i~~~gf-f~G~s~~vw~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~ 311 (345)
T KOG2234|consen 233 LLQDGEAINEYGF-FYGYSSIVWLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGAL 311 (345)
T ss_pred hhccccccccCCc-cccccHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHH
Confidence 4333211111100 012222233333334444444455567777777677777889999999999999999999999999
Q ss_pred HHHHHHHHHhcccccc
Q 021377 269 IIVAGFYAVMWGKSKE 284 (313)
Q Consensus 269 lii~g~~l~~~~~~~~ 284 (313)
+++..+.++...+.++
T Consensus 312 lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 312 LVILSIFLYSLYPARD 327 (345)
T ss_pred HHHHHHHHhhcCCccc
Confidence 9999999998554443
No 28
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.34 E-value=5.1e-11 Score=104.22 Aligned_cols=235 Identities=14% Similarity=0.175 Sum_probs=185.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhh
Q 021377 29 TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV 108 (313)
Q Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~l 108 (313)
.++.|+++...++.+.+...+.|-|+.|++=-.-++-...--+-+++...++.|.|++.. +.....+.-.|+.+
T Consensus 79 ~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~------eYl~~~LIs~Gvsi 152 (327)
T KOG1581|consen 79 GVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSF------EYLVAFLISLGVSI 152 (327)
T ss_pred CCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcH------HHHHHHHHHhheee
Confidence 345578888888888999999999999999877777777666777789999999999999 99999999999998
Q ss_pred heeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHHHHHHHH
Q 021377 109 VTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAF 187 (313)
Q Consensus 109 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 187 (313)
..+++..+ +.++....+...|..++....+.-+..+..++++.++.+ ++..++++..+++++....-
T Consensus 153 F~l~~~s~------------s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~ 220 (327)
T KOG1581|consen 153 FSLFPNSD------------SSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTY 220 (327)
T ss_pred EEEecCCC------------CccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHh
Confidence 86532221 111223345678999999999999999999999887643 67899999999998877665
Q ss_pred HHHhccC-CC--cccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhH
Q 021377 188 ALIVVSE-PS--DWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSL 264 (313)
Q Consensus 188 ~~~~~~~-~~--~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~ 264 (313)
.. ..+. .. ++-..-+..+.-++.... +..+++.+.++-+++.|+.+.+.++...-.+++.++.+.+|.+++..||
T Consensus 221 li-~qg~~~~av~F~~~hp~~~~Di~l~s~-~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~ 298 (327)
T KOG1581|consen 221 LI-LQGHLLPAVSFIKEHPDVAFDILLYST-CGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQW 298 (327)
T ss_pred hh-cCCCCchHHHHHHcChhHHHHHHHHHH-hhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhc
Confidence 33 3221 11 111111224555555555 6679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccc
Q 021377 265 IGAMIIVAGFYAVMWGKSK 283 (313)
Q Consensus 265 ~G~~lii~g~~l~~~~~~~ 283 (313)
+|..+++.|+.+-...|++
T Consensus 299 ~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 299 LGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred cCeeeehHHHHHHHHHHHh
Confidence 9999999999887665555
No 29
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.2e-10 Score=103.09 Aligned_cols=233 Identities=15% Similarity=0.169 Sum_probs=187.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhh
Q 021377 25 RPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIG 104 (313)
Q Consensus 25 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~ 104 (313)
.++++++..++.+...++..+..+.--.+++|.+....+++-...|+++++....++|.+++++ .+.++...++
T Consensus 69 ~~~l~~~~~kk~~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~------v~~Sv~~m~~ 142 (314)
T KOG1444|consen 69 FRPLDLRTAKKWFPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNK------VWASVFAMII 142 (314)
T ss_pred cCCcChHHHHHHccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhh------HHHHHHHHHH
Confidence 3667888888888888888888888899999999999999999999999999999999999988 8888888888
Q ss_pred hhhhheeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHHHH
Q 021377 105 GAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTIL 183 (313)
Q Consensus 105 Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~ 183 (313)
|...... .+..-...|+.+++...++-+.+.+..|+..+... +.+.+++|-.+.+...
T Consensus 143 ~s~~~~~---------------------~d~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~ 201 (314)
T KOG1444|consen 143 GSVAAAF---------------------TDLSFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPP 201 (314)
T ss_pred HHHhhcc---------------------ccceecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHH
Confidence 8777642 11112234899999999999999999998654321 3567888999998888
Q ss_pred HHHHHHHhcc-C-----CCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcC
Q 021377 184 STAFALIVVS-E-----PSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGD 257 (313)
Q Consensus 184 ~~~~~~~~~~-~-----~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge 257 (313)
+.....++++ + ...+. ....+..++..++++-++.|..+ ++.+..+++..+.+....-..+.+...++.|+
T Consensus 202 l~~~~~~~ge~~~l~~~~~~~~--~~~~~~~~~lScv~gf~isy~s~-~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~ 278 (314)
T KOG1444|consen 202 LLILSFITGELDALSLNFDNWS--DSSVLVVMLLSCVMGFGISYTSF-LCTRVNSATTTTIVGAKNKLLTYLGGLLFGDK 278 (314)
T ss_pred HHHHHHHhcchHHHHhhccccc--chhHHHHHHHHHHHHHHHHHHHH-HHHhhccccceeehhhhhhHHHHHHHHhcCCc
Confidence 8887766553 1 11121 22357788888887777776655 88899999999999988888889999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHhccccccccc
Q 021377 258 AFCLGSLIGAMIIVAGFYAVMWGKSKEEKT 287 (313)
Q Consensus 258 ~~~~~~~~G~~lii~g~~l~~~~~~~~~~~ 287 (313)
+.++..++|..+-++|-.++.+.+.++++.
T Consensus 279 ~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~ 308 (314)
T KOG1444|consen 279 PFTFLNVIGLLVGFFGGVLYSYATFRKKKQ 308 (314)
T ss_pred eechhhhHHHHHHhhhhhHHhhhhhhhccC
Confidence 999999999999999999998877665543
No 30
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.18 E-value=3.7e-10 Score=102.41 Aligned_cols=138 Identities=14% Similarity=0.117 Sum_probs=110.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCccc--ccchhHHHHHHHHHH
Q 021377 137 SWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWK--LGLDIGLVAVLYSAV 214 (313)
Q Consensus 137 ~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~~g~ 214 (313)
+...|.++++++++.|+...+..|.. .+. +|..+.++++.++.+++.+...... +..... ......+ .....+.
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~-~~~~~~~~R~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~ 80 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYV-PADEILTHRVIWSFFFMVVLMSICR-QWSYLKTLIQTPQKI-FMLAVSA 80 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-cCC-CHHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHcCHHHH-HHHHHHH
Confidence 44579999999999999999999865 567 5999999999999887776654332 111110 0011122 2334566
Q ss_pred HHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHh
Q 021377 215 IGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM 278 (313)
Q Consensus 215 ~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~ 278 (313)
++.++.+.++++++++.+++.++.+.+..|++++++++++++|+++..+++|.++.++|+.+..
T Consensus 81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 6778899999999999999999999999999999999999999999999999999999998865
No 31
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.15 E-value=5e-09 Score=92.10 Aligned_cols=226 Identities=15% Similarity=0.085 Sum_probs=156.6
Q ss_pred CCCC--HHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhh-hhHHHHHHHHHHHhhhcccccccccCcchhhHHhh
Q 021377 26 PQLT--FSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFAS 102 (313)
Q Consensus 26 ~~~~--~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~-~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~ 102 (313)
|.++ .+.++..++.|++-...+...|.++++.+++.+..+.. ++-+.+.+++.++++|--+..++.- -..++++.
T Consensus 36 p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~--G~~Al~li 113 (269)
T PF06800_consen 36 PAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKII--GFLALVLI 113 (269)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHH--HHHHHHHH
Confidence 4444 37788888889988999999999999999999999975 6778899999999999887662110 13467778
Q ss_pred hhhhhhheeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Q 021377 103 IGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTI 182 (313)
Q Consensus 103 ~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~ 182 (313)
++|+.+... +++.. ...++..+...|....+++.+.|..|.++.|.. +. |+....+=+.+...+
T Consensus 114 iiGv~lts~-~~~~~------------~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~--~~-~~~~~~lPqaiGm~i 177 (269)
T PF06800_consen 114 IIGVILTSY-QDKKS------------DKSSSKSNMKKGILALLISTIGYWIYSVIPKAF--HV-SGWSAFLPQAIGMLI 177 (269)
T ss_pred HHHHHHhcc-ccccc------------cccccccchhhHHHHHHHHHHHHHHHHHHHHhc--CC-ChhHhHHHHHHHHHH
Confidence 888887753 22110 001123445679999999999999999997753 44 466666544333322
Q ss_pred HHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchh
Q 021377 183 LSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLG 262 (313)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~ 262 (313)
...++.....+ ..++ ...|.. +..|+ .=.++-.++..+.++.|....=.+.-+.++++.+.+.+++||+=+..
T Consensus 178 ~a~i~~~~~~~--~~~~---k~~~~n-il~G~-~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~k 250 (269)
T PF06800_consen 178 GAFIFNLFSKK--PFFE---KKSWKN-ILTGL-IWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKK 250 (269)
T ss_pred HHHHHhhcccc--cccc---cchHHh-hHHHH-HHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchh
Confidence 22222222211 1111 112222 33333 23467778889999999999999999999999999999999987765
Q ss_pred ----hHHHHHHHHHHHHH
Q 021377 263 ----SLIGAMIIVAGFYA 276 (313)
Q Consensus 263 ----~~~G~~lii~g~~l 276 (313)
.++|.++++.|..+
T Consensus 251 e~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 251 EMIYTLIGLILIVIGAIL 268 (269)
T ss_pred hHHHHHHHHHHHHHhhhc
Confidence 44688888887654
No 32
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.14 E-value=1.7e-09 Score=97.32 Aligned_cols=133 Identities=11% Similarity=0.165 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHH
Q 021377 142 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRV 221 (313)
Q Consensus 142 ~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~ 221 (313)
.++.++++++|+.+.+..|+..++.+ +. ..+.+..+++...++..... ....+..... .+...+..+.++....+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~-~~--~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 77 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEP-DF--LWWALLAHSVLLTPYGLWYL-AQVGWSRLPA-TFWLLLAISAVANMVYF 77 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchh-HH--HHHHHHHHHHHHHHHHHHhc-ccCCCCCcch-hhHHHHHHHHHHHHHHH
Confidence 46889999999999999998777653 43 35666666667766655321 1123332222 33334444555778999
Q ss_pred HHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhc
Q 021377 222 GLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMW 279 (313)
Q Consensus 222 ~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~ 279 (313)
.++++++++.+++.++++.+..|+++.+++++++||+++..+++|.++++.|+.+...
T Consensus 78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999988764
No 33
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.12 E-value=1.3e-09 Score=88.73 Aligned_cols=138 Identities=14% Similarity=0.176 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh------chhHHHHHHHHHHHHHHHHHHHHHHhccCCC--ccc-cc------chhH
Q 021377 141 GGFFLAAEAFMNSAWFILQALILRK------FAAVLIIMFYLFFFNTILSTAFALIVVSEPS--DWK-LG------LDIG 205 (313)
Q Consensus 141 G~~~~l~s~~~~a~~~v~~k~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~------~~~~ 205 (313)
|.++++.+.++.+++.++.|+..++ ..++..+..+....+.+.+++...+.+.... ... .. ....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 6789999999999999999987665 2378999999999999999999887764321 010 00 1234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhc
Q 021377 206 LVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMW 279 (313)
Q Consensus 206 ~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~ 279 (313)
+..++..|+ ....-....+..+++.+|...+....+..+..++.+++++||++++.+++|.++.+.|.+++.|
T Consensus 81 ~~~~~~~~~-~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGL-LAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 555555555 3446666677889999999999999999999999999999999999999999999999988754
No 34
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=99.10 E-value=1.5e-09 Score=85.69 Aligned_cols=123 Identities=13% Similarity=0.156 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHH
Q 021377 140 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGF 219 (313)
Q Consensus 140 ~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~ 219 (313)
.|.++.+.+.++-+..+++-|+-.++.+ ....... . . ...... . .....+++|+++.++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g-~~~~~~~-~----~-~~~~~~---------~-----~p~~~i~lgl~~~~l 60 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLP-LLSHAWD-F----I-AALLAF---------G-----LALRAVLLGLAGYAL 60 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCC-CccchhH-H----H-HHHHHH---------h-----ccHHHHHHHHHHHHH
Confidence 3788999999999999999999887764 2221111 0 0 000000 0 111247889999999
Q ss_pred HHHHHHHHhccCCceeeeechhhHHHHHHHHHHH--HhcCccchhhHHHHHHHHHHHHHHhccccc
Q 021377 220 RVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVV--IVGDAFCLGSLIGAMIIVAGFYAVMWGKSK 283 (313)
Q Consensus 220 ~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l--~~ge~~~~~~~~G~~lii~g~~l~~~~~~~ 283 (313)
++.+|.+++++.+.+++.++....++...+.++. ++||++++.+++|+++|++|+++..+.+++
T Consensus 61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~ 126 (129)
T PRK02971 61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK 126 (129)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999998888888875 899999999999999999999998765443
No 35
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.09 E-value=1.5e-09 Score=96.22 Aligned_cols=136 Identities=13% Similarity=0.144 Sum_probs=108.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCC---Cccccc-chhHHHHHHHHHHH
Q 021377 140 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEP---SDWKLG-LDIGLVAVLYSAVI 215 (313)
Q Consensus 140 ~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~ll~~g~~ 215 (313)
+|.++.++++++|+...+..|. ..+. +|..+.+++++++++.+.+......+.. ..++.. ....+..+...|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~-~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKPL-PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hccC-CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 4889999999999999999997 4567 5999999999999888766554332110 011111 11123345556654
Q ss_pred HHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHh
Q 021377 216 GTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM 278 (313)
Q Consensus 216 ~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~ 278 (313)
..+.+.++++++++.++..++.+.+..|++++++++++++|+++..+++|.++.++|+.+..
T Consensus 80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 66889999999999999999999999999999999999999999999999999999988764
No 36
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.02 E-value=1.4e-08 Score=87.82 Aligned_cols=243 Identities=14% Similarity=0.152 Sum_probs=155.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcccc-ChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhh
Q 021377 26 PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYS-SPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIG 104 (313)
Q Consensus 26 ~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~-~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~ 104 (313)
++.+.|++.....+- ...+.+-.+++++- +...-.++-.-.++-++++++++.|+|.+.+ |+.++++..+
T Consensus 60 ~kiplk~Y~i~V~mF---F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~------Qy~Sv~~iTi 130 (330)
T KOG1583|consen 60 PKIPLKDYAITVAMF---FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLR------QYSSVLMITI 130 (330)
T ss_pred CCCchhhhheehhee---eeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehh------hhhhHHhhhh
Confidence 556666665543322 33333334455543 2333334555688999999999999999999 9999999999
Q ss_pred hhhhheeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhHHHHHHHHHHHHHHH
Q 021377 105 GAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKF-AAVLIIMFYLFFFNTIL 183 (313)
Q Consensus 105 Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~-~~~~~~~~~~~~~~~~~ 183 (313)
|+++.++.++++.+. ..+.-.+++...+...|..|..+...+.+.-|.-.+.+...-+++ +++-..++|.-......
T Consensus 131 GiiIcTl~s~~d~~~--~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~ 208 (330)
T KOG1583|consen 131 GIIICTLFSSKDGRS--KLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPL 208 (330)
T ss_pred hheeEEeecCcchhh--hhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccch
Confidence 999998766655442 011111222223345567898888888777777777666554443 35667888888877665
Q ss_pred HHHHHH-Hhcc-----CCCcccc-----cchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHH
Q 021377 184 STAFAL-IVVS-----EPSDWKL-----GLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDV 252 (313)
Q Consensus 184 ~~~~~~-~~~~-----~~~~~~~-----~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~ 252 (313)
++...- +..+ ..+.... .-+..|..++...+ ....+----+..-.+.++.+++++..+.-.++.++++
T Consensus 209 Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L-~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~Si 287 (330)
T KOG1583|consen 209 FLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVL-TQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSI 287 (330)
T ss_pred HHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHH-HHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhhee
Confidence 554321 0000 0011111 11234544443332 2222222223345678888999999999999999999
Q ss_pred HHhcCccchhhHHHHHHHHHHHHHHhcc
Q 021377 253 VIVGDAFCLGSLIGAMIIVAGFYAVMWG 280 (313)
Q Consensus 253 l~~ge~~~~~~~~G~~lii~g~~l~~~~ 280 (313)
+.++.++++..|+|.+++..|-.++.-.
T Consensus 288 iyF~Npft~~h~lGa~lVF~Gt~~fa~~ 315 (330)
T KOG1583|consen 288 IYFENPFTPWHWLGAALVFFGTLLFANV 315 (330)
T ss_pred eEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987643
No 37
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.96 E-value=6.8e-10 Score=86.01 Aligned_cols=76 Identities=21% Similarity=0.370 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHHH-HHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhh
Q 021377 29 TFSILCSFFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAF 107 (313)
Q Consensus 29 ~~~~~~~~~~~g~~~-~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ 107 (313)
+.|.+.+....|+++ ..++.++++|+++.+ +.++++.++.|+++.+++++++|||++++ ++.+++++++|++
T Consensus 30 ~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~------~~~a~~l~~~Gv~ 102 (113)
T PF13536_consen 30 RRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPR------RWLAILLILIGVI 102 (113)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHH
Confidence 445667777778888 699999999999999 58889999999999999999999999999 9999999999999
Q ss_pred hhee
Q 021377 108 VVTF 111 (313)
Q Consensus 108 ll~~ 111 (313)
++..
T Consensus 103 li~~ 106 (113)
T PF13536_consen 103 LIAW 106 (113)
T ss_pred HHhh
Confidence 9953
No 38
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.95 E-value=1.1e-09 Score=85.48 Aligned_cols=83 Identities=19% Similarity=0.372 Sum_probs=75.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhH
Q 021377 21 YSTERPQLTFSILCSFFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGT 99 (313)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~ 99 (313)
++++.+..+.+++......|.++ ..++.+++.|+++++++.++++.++.|+++.+++++++||+++++ ++.|+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~ 114 (126)
T PF00892_consen 41 GRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGI 114 (126)
T ss_pred ccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHH
Confidence 33333556778888888999997 999999999999999999999999999999999999999999999 99999
Q ss_pred Hhhhhhhhhh
Q 021377 100 FASIGGAFVV 109 (313)
Q Consensus 100 ~l~~~Gv~ll 109 (313)
+++++|+.++
T Consensus 115 ~l~~~g~~l~ 124 (126)
T PF00892_consen 115 ILIIIGVVLI 124 (126)
T ss_pred HHHHHHHHHH
Confidence 9999999886
No 39
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=1.5e-09 Score=93.73 Aligned_cols=235 Identities=14% Similarity=0.065 Sum_probs=170.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhh
Q 021377 28 LTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAF 107 (313)
Q Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ 107 (313)
++.+....+.-+.+...+...+-.+++.|.+++.--+=-++..+|+.++.++++|||-+.. -..+..+.+.|-.
T Consensus 97 ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~------~~~~C~lIi~GF~ 170 (347)
T KOG1442|consen 97 LDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFF------ALGCCLLIILGFG 170 (347)
T ss_pred ccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccc------cceeehhheehhe
Confidence 3444444444444444444455566778888877777777888999999999999999988 6666665555544
Q ss_pred hheeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHHHHHHH
Q 021377 108 VVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTA 186 (313)
Q Consensus 108 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~ 186 (313)
+=. +. ++..+.-.+.|.++.+.++++-|+..+..|+...... .-+.++.|....+.++.+|
T Consensus 171 lGv---dq---------------E~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflp 232 (347)
T KOG1442|consen 171 LGV---DQ---------------EGSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLP 232 (347)
T ss_pred ecc---cc---------------ccccCccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHH
Confidence 321 00 0112233468999999999999999999997654432 2378899999999999998
Q ss_pred HHHHhccCCC---cc-cccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchh
Q 021377 187 FALIVVSEPS---DW-KLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLG 262 (313)
Q Consensus 187 ~~~~~~~~~~---~~-~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~ 262 (313)
...+.+. .+ .+ ..+....|..+...|+++-.++|.-. +=++..+|.+-.+-....-..-.++++.+.+|.-+..
T Consensus 233 ll~lnge-~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg-~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~l 310 (347)
T KOG1442|consen 233 LLILNGE-FQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTG-WQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGL 310 (347)
T ss_pred HHHHcch-HHHHcCcccchHHHHHHHHHHHHHHHHHhhheee-EEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhh
Confidence 8765542 21 11 12223467777777776665555432 4477789999898888888999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhcccccccccc
Q 021377 263 SLIGAMIIVAGFYAVMWGKSKEEKTT 288 (313)
Q Consensus 263 ~~~G~~lii~g~~l~~~~~~~~~~~~ 288 (313)
-|-|-.+++.|-..+++.|+++.++.
T Consensus 311 wwtsn~~vLvgs~~YT~vk~~em~~~ 336 (347)
T KOG1442|consen 311 WWTSNIVVLVGSLAYTLVKEHEMRKA 336 (347)
T ss_pred eeeeeEEEEehhHHHHHHHHHHHHhh
Confidence 99999999999999999888876554
No 40
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.90 E-value=1.5e-08 Score=83.59 Aligned_cols=210 Identities=19% Similarity=0.206 Sum_probs=147.3
Q ss_pred HHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhheeecCCCCcCCCC
Q 021377 43 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELS 122 (313)
Q Consensus 43 ~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~ 122 (313)
-.+.++.|..|+...++++++.+......|+.+++++.+|+|+.-. ++.+.++++.|+.++.. -++
T Consensus 63 Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~------kIlaailAI~GiVmiay-~DN------- 128 (290)
T KOG4314|consen 63 WTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGF------KILAAILAIGGIVMIAY-ADN------- 128 (290)
T ss_pred EecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhh------hHHHHHHHhCcEEEEEe-ccc-------
Confidence 3788999999999999999999999999999999999999999999 99999999999999863 121
Q ss_pred CCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhch--hHHHHHHHHHHHHHHHH-H-HHHHHhccCCCcc
Q 021377 123 HSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA--AVLIIMFYLFFFNTILS-T-AFALIVVSEPSDW 198 (313)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~--~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~ 198 (313)
.....+.|..++..++..-|+|.++-|+...... |....+...-++-.++. . ++.+.+. ..+.|
T Consensus 129 -----------~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T-~VE~~ 196 (290)
T KOG4314|consen 129 -----------EHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFT-GVEHL 196 (290)
T ss_pred -----------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHh-chHHH
Confidence 1123468999999999999999999998764321 11111111111111111 1 1111111 12233
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHh
Q 021377 199 KLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM 278 (313)
Q Consensus 199 ~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~ 278 (313)
+......|..+...+.+...+ -.+.+.++..+.|...|.-+....+--...+.++-+-..+...+.|..+|++|..+..
T Consensus 197 qsFA~~PWG~l~G~A~L~lAF-N~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLii 275 (290)
T KOG4314|consen 197 QSFAAAPWGCLCGAAGLSLAF-NFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILII 275 (290)
T ss_pred HHHhhCCchhhhhHHHHHHHH-hhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHhee
Confidence 322222355444443322222 2344577888889999998888888888999887777788889999999999988765
Q ss_pred c
Q 021377 279 W 279 (313)
Q Consensus 279 ~ 279 (313)
.
T Consensus 276 i 276 (290)
T KOG4314|consen 276 I 276 (290)
T ss_pred c
Confidence 4
No 41
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.90 E-value=2.9e-08 Score=92.09 Aligned_cols=140 Identities=9% Similarity=0.068 Sum_probs=114.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHH
Q 021377 139 ILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTG 218 (313)
Q Consensus 139 ~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~ 218 (313)
..-...+++.-++|+.+.++.|...++.-++....++++.++++++.++++..++.. .++......+..+..+|+++ .
T Consensus 12 ~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~-~~~~~~~~~~~~l~l~g~~g-~ 89 (358)
T PLN00411 12 AVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSR-SLPPLSVSILSKIGLLGFLG-S 89 (358)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhc-ccCcchHHHHHHHHHHHHHH-H
Confidence 345678888889999999999998876547899999999999999998876543211 11111123566777788876 4
Q ss_pred HHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHH------hcCccchhhHHHHHHHHHHHHHHhcc
Q 021377 219 FRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVI------VGDAFCLGSLIGAMIIVAGFYAVMWG 280 (313)
Q Consensus 219 ~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~------~ge~~~~~~~~G~~lii~g~~l~~~~ 280 (313)
+.+.+++.++++++++.++.+.++.|+++.++++++ ++|+++..+++|.++-++|+.+....
T Consensus 90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~ 157 (358)
T PLN00411 90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFY 157 (358)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence 667789999999999999999999999999999999 69999999999999999999887643
No 42
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=98.89 E-value=3.3e-08 Score=85.77 Aligned_cols=224 Identities=13% Similarity=0.134 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhheeecCCCC
Q 021377 38 LLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPL 117 (313)
Q Consensus 38 ~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~ 117 (313)
.-+++...+..++|.|+.+++++.-+++-...-+|+.+++.-+++.+++.+ +|+|+.....|+..+.. .+-
T Consensus 91 ~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~-~d~-- 161 (372)
T KOG3912|consen 91 PPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGS-LDV-- 161 (372)
T ss_pred ChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeee-eec--
Confidence 356666778889999999999999999999999999999999999999999 99999999999998842 111
Q ss_pred cCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHHHHHHHHHHHhc--cC
Q 021377 118 IGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVV--SE 194 (313)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 194 (313)
.. ..++-.+-.+-..|+++.+++-+.-|+-.++..|..+++. +|.....|.-++|.+++..++.... +.
T Consensus 162 ~~--------~~~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~ 233 (372)
T KOG3912|consen 162 HL--------VTDPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPS 233 (372)
T ss_pred cc--------ccCCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheec
Confidence 10 0111122345578999999999999999999888776542 5899999999999777666554221 10
Q ss_pred CCcccccch---hHHH---------HHHHHHHHHHHHHHHHHHH----HhccCCceeeeechhhHHHHHHHHHHHHhcCc
Q 021377 195 PSDWKLGLD---IGLV---------AVLYSAVIGTGFRVGLCTW----CLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDA 258 (313)
Q Consensus 195 ~~~~~~~~~---~~~~---------~ll~~g~~~s~~~~~l~~~----a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~ 258 (313)
...++..+. .+|. ..++....+..++-.+++. --+..++++=.+.-.+...+-=+++.....|.
T Consensus 234 ~~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~ 313 (372)
T KOG3912|consen 234 GDSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEY 313 (372)
T ss_pred CCcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHH
Confidence 001111110 0111 1233333333344444442 23456777777777888888888888889999
Q ss_pred cchhhHHHHHHHHHHHHHHh
Q 021377 259 FCLGSLIGAMIIVAGFYAVM 278 (313)
Q Consensus 259 ~~~~~~~G~~lii~g~~l~~ 278 (313)
++..|+.|.++.+.|+.++.
T Consensus 314 f~llqilGFliLi~Gi~lY~ 333 (372)
T KOG3912|consen 314 FHLLQILGFLILIMGIILYN 333 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999886
No 43
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.88 E-value=1.8e-09 Score=82.83 Aligned_cols=77 Identities=17% Similarity=0.208 Sum_probs=73.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhh
Q 021377 28 LTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAF 107 (313)
Q Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ 107 (313)
.++|.|..+.+.|+.+.++.++||.|++...++....+..+.|+++.+++++++|||+|.+ +++|+.+..+|++
T Consensus 62 ~~~k~~lflilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gai 135 (140)
T COG2510 62 IGPKSWLFLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAI 135 (140)
T ss_pred cCcceehhhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCee
Confidence 5788899999999888999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hhe
Q 021377 108 VVT 110 (313)
Q Consensus 108 ll~ 110 (313)
++.
T Consensus 136 lvs 138 (140)
T COG2510 136 LVS 138 (140)
T ss_pred eEe
Confidence 874
No 44
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.83 E-value=1.2e-08 Score=88.12 Aligned_cols=225 Identities=10% Similarity=0.118 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhheee
Q 021377 33 LCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY 112 (313)
Q Consensus 33 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~ 112 (313)
|..+..++.+....+.+..-++.|++=-.-.++..+--+-+++.+.++-+.|.++. +.++..+..+|.++.++.
T Consensus 106 ~rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~------d~~aA~lm~lGli~FTLA 179 (367)
T KOG1582|consen 106 WRTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVH------DYIAAMLMSLGLIWFTLA 179 (367)
T ss_pred hhHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHH------HHHHHHHHHHHHHhhhhc
Confidence 55566666666777777777888877555555555555556667888899999999 999999999999998752
Q ss_pred cCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHHHHHHHHHHHh
Q 021377 113 KGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIV 191 (313)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 191 (313)
+.. .+..-...|..+.-.+.++-|.-..++.+..+..| +...+.+|.+.+|.+.++......
T Consensus 180 Ds~-----------------~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlT 242 (367)
T KOG1582|consen 180 DSQ-----------------TSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLT 242 (367)
T ss_pred ccc-----------------cCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhc
Confidence 111 12223457998888888898988888888877765 347888899999988887776655
Q ss_pred ccCCCcccccch---hHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHH
Q 021377 192 VSEPSDWKLGLD---IGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAM 268 (313)
Q Consensus 192 ~~~~~~~~~~~~---~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~ 268 (313)
++-+..|..-.. ........... .+.++...-...++..|+..+..++...--+++++++++|..++|....-|..
T Consensus 243 ge~f~a~~fcaehp~~tyGy~~~~s~-~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gl 321 (367)
T KOG1582|consen 243 GELFSAWTFCAEHPVRTYGYAFLFSL-AGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGL 321 (367)
T ss_pred ccchhhhHHHHhCcHhHHHHHHHHHH-HhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhH
Confidence 543444432111 12223333332 45566677777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccc
Q 021377 269 IIVAGFYAVMWGK 281 (313)
Q Consensus 269 lii~g~~l~~~~~ 281 (313)
+++.|+++-.+.|
T Consensus 322 lv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 322 LVVLGIYLNMYSK 334 (367)
T ss_pred HHHHHHHhhcccC
Confidence 9999999977766
No 45
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.81 E-value=1.2e-07 Score=85.86 Aligned_cols=132 Identities=14% Similarity=0.076 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHH
Q 021377 142 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRV 221 (313)
Q Consensus 142 ~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~ 221 (313)
.+..++-.+.|+...+..|...++. +|...+++++.+++++++++....... ..+...+...+..|++...+.+
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~~~-~p~~~~~~R~~~a~l~ll~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~ 83 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVESW-PPLMMAGVRFLIAGILLLAFLLLRGHP-----LPTLRQWLNAALIGLLLLAVGN 83 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCcHHHHHHHHHHHHHHHHHHH
Confidence 4667888899999999999888887 599999999999999888776532211 1123356666778877766788
Q ss_pred HHHHHHh-ccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcc
Q 021377 222 GLCTWCL-SRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG 280 (313)
Q Consensus 222 ~l~~~a~-~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~ 280 (313)
.+++.+. ++.++..++.+.++.|+++.+++++ ++|+++..+++|.++.++|+.+....
T Consensus 84 ~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~ 142 (292)
T PRK11272 84 GMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG 142 (292)
T ss_pred HHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence 8888998 9999999999999999999999985 79999999999999999999887643
No 46
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.80 E-value=5.7e-08 Score=86.06 Aligned_cols=119 Identities=13% Similarity=0.043 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 021377 152 NSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRT 231 (313)
Q Consensus 152 ~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~ 231 (313)
|+...+..|...++..++....+++.+.+.+.+.++.... .....+...+..|.++..+.+.++++++++.
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~ 71 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR---------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRL 71 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc---------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555667777665443589999999998888777654321 1223556677777778889999999999999
Q ss_pred CceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhc
Q 021377 232 GPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMW 279 (313)
Q Consensus 232 ~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~ 279 (313)
++..++++..++|+++.+++.++++|++++.+++|.++.++|+.+...
T Consensus 72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 72 PVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred ChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence 999999999999999999999999999999999999999999988753
No 47
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.78 E-value=3.2e-08 Score=76.57 Aligned_cols=108 Identities=13% Similarity=0.260 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHH
Q 021377 175 YLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVI 254 (313)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~ 254 (313)
+++.++.+..........+..+.+.......+...+..|+++...++.+|.+++++.++ .++.+..+.|+++.++++++
T Consensus 3 ~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~ 81 (113)
T PF13536_consen 3 FRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLF 81 (113)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555443221111111112245566667777777999999999999995 88899999999999999999
Q ss_pred hcCccchhhHHHHHHHHHHHHHHhccccc
Q 021377 255 VGDAFCLGSLIGAMIIVAGFYAVMWGKSK 283 (313)
Q Consensus 255 ~ge~~~~~~~~G~~lii~g~~l~~~~~~~ 283 (313)
++|+++..+++|.+++++|+.+..+.+..
T Consensus 82 ~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 82 FKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999998876543
No 48
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.71 E-value=3e-07 Score=83.20 Aligned_cols=227 Identities=19% Similarity=0.228 Sum_probs=127.4
Q ss_pred HHHHHHH-HHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhheeecCC
Q 021377 37 FLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGP 115 (313)
Q Consensus 37 ~~~g~~~-~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~ 115 (313)
.+.|++. .++..+.+.|+.+.|.+..+.+..+.-++.++++..++|||++++ .+.|..+.+.|..++... ++
T Consensus 53 W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~~-~~ 125 (300)
T PF05653_consen 53 WWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVIF-AP 125 (300)
T ss_pred HHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEEe-CC
Confidence 3456666 788889999999999999999999999999999999999999999 999999999999987653 32
Q ss_pred CCcCCCCCCCCCCccCC----CCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHH---HH
Q 021377 116 PLIGELSHSGSPRRLLL----SPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTA---FA 188 (313)
Q Consensus 116 ~~~~~~~~~~~~~~~~~----~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 188 (313)
.-+ +..+.++ -.+..+ ..+...... +...+.....+|..++. .........++|+...+. +.
T Consensus 126 ~~~-------~~~t~~~l~~~~~~~~f-l~y~~~~~~-~~~~L~~~~~~r~g~~~--i~vyi~i~sl~Gs~tvl~~K~i~ 194 (300)
T PF05653_consen 126 KEE-------PIHTLDELIALLSQPGF-LVYFILVLV-LILILIFFIKPRYGRRN--ILVYISICSLIGSFTVLSAKAIS 194 (300)
T ss_pred CCC-------CcCCHHHHHHHhcCcce-ehhHHHHHH-HHHHHHHhhcchhcccc--eEEEEEEeccccchhhhHHHHHH
Confidence 111 0000000 000111 112212222 22222222222222211 111111111222211111 00
Q ss_pred -HHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhh-HHHHHHHHHHHHhcCcc--ch---
Q 021377 189 -LIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPL-AIVFSIVMDVVIVGDAF--CL--- 261 (313)
Q Consensus 189 -~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~-~pv~a~i~~~l~~ge~~--~~--- 261 (313)
.+...-..+........|..++.+ +.+...-....++++++.+++.+.++.+. -...+++-+.++++|.- +.
T Consensus 195 ~~i~~~~~g~~~f~~~~~y~l~~~~-v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~ 273 (300)
T PF05653_consen 195 ILIKLTFSGDNQFTYPLTYLLLLVL-VVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQI 273 (300)
T ss_pred HHHHHHhcCchhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHH
Confidence 011100001111112234333333 32444555566789999999999887776 45666777778899853 33
Q ss_pred -hhHHHHHHHHHHHHHHhcccc
Q 021377 262 -GSLIGAMIIVAGFYAVMWGKS 282 (313)
Q Consensus 262 -~~~~G~~lii~g~~l~~~~~~ 282 (313)
....|..+++.|+++....|.
T Consensus 274 ~~~~~G~~~ii~GV~lL~~~~~ 295 (300)
T PF05653_consen 274 IGFLCGFLIIIIGVFLLSSSKD 295 (300)
T ss_pred HHHHHHHHHHHHhhheeeccCc
Confidence 345678888899988764433
No 49
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.71 E-value=5.8e-08 Score=81.62 Aligned_cols=225 Identities=16% Similarity=0.113 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhheeecCCCC
Q 021377 38 LLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPL 117 (313)
Q Consensus 38 ~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~ 117 (313)
...++-....+.--.++||.+...-+++.++.-+.++..-..++|.|++-. .....++.+..-..-.. ++
T Consensus 73 piSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl------~l~SFilMvlSS~va~w--~D-- 142 (309)
T COG5070 73 PISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSL------ELLSFILMVLSSVVATW--GD-- 142 (309)
T ss_pred CHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchh------hHHHHHHHHHHHHHhcc--ch--
Confidence 344444555566778999999999999999999999999999999999988 78877777666555431 11
Q ss_pred cCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhh--hchhHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 021377 118 IGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILR--KFAAVLIIMFYLFFFNTILSTAFALIVVSEP 195 (313)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (313)
+++ ..........|++|+....+.-+.|-+..|+..+ +. .....++|..+.+..+++.+...++. +
T Consensus 143 --------~q~--~~~~~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf-~d~dtmfYnNllslPiL~~~s~~~ed-w 210 (309)
T COG5070 143 --------QQA--SAFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNF-KDFDTMFYNNLLSLPILLSFSFLFED-W 210 (309)
T ss_pred --------hhH--HHHHhcccCCceEEEehhhHhHHHHHHHHHHhhccccc-chhhHHHHhhhHHHHHHHHHHHHhcc-C
Confidence 000 0011234457999999999999999998887543 22 25678899999999998888887663 2
Q ss_pred Ccccc---cchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHH
Q 021377 196 SDWKL---GLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVA 272 (313)
Q Consensus 196 ~~~~~---~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~ 272 (313)
.+-.. .+.....++...|+ ++..--++-.|+++.++++..+.+..+.-.-..+-|.+++||+.+...+....+-.+
T Consensus 211 s~~n~annl~~d~l~am~ISgl-~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGfl 289 (309)
T COG5070 211 SPGNLANNLSVDSLMAMFISGL-CSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFL 289 (309)
T ss_pred CcchhhcCCChHHHHHHHHHHH-HHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHH
Confidence 22111 11224567777787 444444566799999999999999999999999999999999999999999888877
Q ss_pred HHHHHhccccccc
Q 021377 273 GFYAVMWGKSKEE 285 (313)
Q Consensus 273 g~~l~~~~~~~~~ 285 (313)
...++...+.+++
T Consensus 290 sg~iYavaks~k~ 302 (309)
T COG5070 290 SGAIYAVAKSKKQ 302 (309)
T ss_pred HHHHHHHHHHHHH
Confidence 7777766555433
No 50
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.70 E-value=3.3e-07 Score=83.18 Aligned_cols=127 Identities=13% Similarity=0.107 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHH
Q 021377 142 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRV 221 (313)
Q Consensus 142 ~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~ 221 (313)
.+++++++++|+...+..|...++. +|....++++.++++.++++.. .+. . .+..++..|++.....+
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~~~-~p~~~~~~R~~~a~~~l~~~~~---~~~--~------~~~~~~~~g~~~~~~~~ 73 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLHNM-PPLMLAGLRFMLVAFPAIFFVA---RPK--V------PLNLLLGYGLTISFGQF 73 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHhc---CCC--C------chHHHHHHHHHHHHHHH
Confidence 3668899999999999999888888 5999999999998766554321 111 1 12223334544444555
Q ss_pred HHHHHHhcc-CCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcc
Q 021377 222 GLCTWCLSR-TGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG 280 (313)
Q Consensus 222 ~l~~~a~~~-~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~ 280 (313)
.+++.++++ .++..++.+....|+++.++++++++|+++..+++|.++.++|+.+..+.
T Consensus 74 ~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~ 133 (299)
T PRK11453 74 AFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED 133 (299)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence 667788887 67889999999999999999999999999999999999999999887643
No 51
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.66 E-value=5.9e-07 Score=81.40 Aligned_cols=131 Identities=13% Similarity=-0.014 Sum_probs=98.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHH
Q 021377 140 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGF 219 (313)
Q Consensus 140 ~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~ 219 (313)
.+.++++++.++|+......|...++.| |....++++..+++++.++. .. ...+.. .+...+. +.+....
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~~~-P~~~~~~R~~~a~l~l~~~~---~~--~~~~~~---~~~~~~~-~~l~~~~ 73 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSESLG-PVGGAAMIYSVSGLLLLLTV---GF--PRLRQF---PKRYLLA-GGLLFVS 73 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHccCC-hHHHHHHHHHHHHHHHHHHc---cc--cccccc---cHHHHHH-HhHHHHH
Confidence 3578899999999999999999988985 99999999999988877642 11 111111 1212222 2223334
Q ss_pred HHHHHHHHh----ccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcc
Q 021377 220 RVGLCTWCL----SRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG 280 (313)
Q Consensus 220 ~~~l~~~a~----~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~ 280 (313)
.+.+++.++ +..++..++.+.++.|++++++++++++|+++..+++|.++.++|+.+....
T Consensus 74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~ 138 (295)
T PRK11689 74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG 138 (295)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence 444455554 4577888899999999999999999999999999999999999999887643
No 52
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.65 E-value=1e-06 Score=81.75 Aligned_cols=136 Identities=13% Similarity=0.111 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHH
Q 021377 142 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRV 221 (313)
Q Consensus 142 ~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~ 221 (313)
..+.+.--.+...+++.+|...+..|-|..++.++++++.+...++......+.+++. .....+..++.+|++.. ..+
T Consensus 51 ~~~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~llp~gl~~~-~~~ 128 (350)
T PTZ00343 51 ALLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIK-SLKLFLKNFLPQGLCHL-FVH 128 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-CHHHHHHHHHHHHHHHH-HHH
Confidence 3344444444556677889998888449999999999998765544221111111121 12335667788888655 457
Q ss_pred HHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhc
Q 021377 222 GLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMW 279 (313)
Q Consensus 222 ~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~ 279 (313)
...+.++++.+++.++++...+|++++++++++++|+++..++.|.+++++|+.+...
T Consensus 129 ~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~ 186 (350)
T PTZ00343 129 FGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV 186 (350)
T ss_pred HHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence 7777999999999999999999999999999999999999999999999999998753
No 53
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.65 E-value=3.8e-07 Score=82.87 Aligned_cols=122 Identities=15% Similarity=0.117 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 021377 153 SAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTG 232 (313)
Q Consensus 153 a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~ 232 (313)
..+++++|...++.+.|...+++++.++.+...+.......+.. . ....++..++..|++ ..+.+.+.++++++++
T Consensus 15 ~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~~s 90 (302)
T TIGR00817 15 VYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRL--K-ISSALLKLLLPVAIV-HTIGHVTSNVSLSKVA 90 (302)
T ss_pred HHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCC--C-CCHHHHHHHHHHHHH-HHHHHHHHHHHHHhcc
Confidence 34556789988885569999999999887765544111111111 1 223477788888886 4688899999999999
Q ss_pred ceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHh
Q 021377 233 PLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM 278 (313)
Q Consensus 233 a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~ 278 (313)
++..+++..+.|++++++++++++|+++..+++|.++++.|+.+..
T Consensus 91 ~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 91 VSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999998754
No 54
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.63 E-value=2.7e-07 Score=71.08 Aligned_cols=67 Identities=15% Similarity=0.126 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHh
Q 021377 212 SAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM 278 (313)
Q Consensus 212 ~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~ 278 (313)
.++++.++++.+|.+++++.+.+++-.+..+.++++.+++++++||++++.+++|.++++.|+.+..
T Consensus 42 ~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 42 LALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4446778899999999999999999999999999999999999999999999999999999998764
No 55
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.62 E-value=1.5e-07 Score=81.68 Aligned_cols=207 Identities=10% Similarity=-0.009 Sum_probs=123.8
Q ss_pred hhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhheeecCCCCc--------CCCCCCCCCCccC
Q 021377 60 TLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLI--------GELSHSGSPRRLL 131 (313)
Q Consensus 60 ~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~--------~~~~~~~~~~~~~ 131 (313)
.......+..++++++..+...++|.+.. |+++.++...|++.-.. ++.... ....+.+ ...+.
T Consensus 5 Pa~~~~~s~~l~~v~l~~~~~~~~~~~~~------~i~~~~l~~~g~l~~~l-s~~q~~al~~l~~~~~~~~~~-~~~~~ 76 (222)
T TIGR00803 5 PIHIIFKQNNLVLIALGNLLAAGKQVTQL------KILSTALMTLGSLVASL-GDDQWFSLKLLKLGVAIVQMV-QSSAK 76 (222)
T ss_pred cchHHHHhcchHHHHHhcccccceeeehH------HHHHHHHHHHHHHHhHh-hHHHHHHHHHHHHhHeeeecC-CCCcc
Confidence 34456677888888888888888888877 88888888888774321 000000 0000000 00000
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHHHHHHHHhccCC-CcccccchhHHHHH
Q 021377 132 LSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAA-VLIIMFYLFFFNTILSTAFALIVVSEP-SDWKLGLDIGLVAV 209 (313)
Q Consensus 132 ~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l 209 (313)
....++...|....+.+.++-+...+.+++..++... ...-+....+++.+...........+. .++.... .+...
T Consensus 77 ~~~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 154 (222)
T TIGR00803 77 TLMFGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFI--GYPTA 154 (222)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCccc--CCchH
Confidence 1112344567777777777777788888776554321 111222222222222111111111110 1111000 11111
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHH
Q 021377 210 LYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYA 276 (313)
Q Consensus 210 l~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l 276 (313)
.+.-++...++..+..+.+++.++...+....++++++.+++++++||+++..++.|+.+++.|+++
T Consensus 155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 2222235667888899999999999999999999999999999999999999999999999988764
No 56
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.54 E-value=2.5e-05 Score=71.58 Aligned_cols=242 Identities=11% Similarity=0.073 Sum_probs=147.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhh-hhhHHHHHHHHHHHhhhccccc-ccccCcchhhHHhhhhh
Q 021377 28 LTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAML-NLIPAFTFVLAIIFRLEKLNWE-NKSSQAKSLGTFASIGG 105 (313)
Q Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~-~~~P~~~~l~a~~~~~E~~~~~-~~~~~~~~~g~~l~~~G 105 (313)
.+.+.+...++.|.+-...+..++.++++.+.+.+..+. .+.-+...++..++++|=.+.. ......-.+|+++.++|
T Consensus 68 ~~~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliG 147 (345)
T PRK13499 68 FSGSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIG 147 (345)
T ss_pred cCHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHH
Confidence 466777777888888899999999999999999998774 4888999999999988754111 11222257888889999
Q ss_pred hhhheeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHH-------HHHHHHh-hhchhHHHHHHHHH
Q 021377 106 AFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWF-------ILQALIL-RKFAAVLIIMFYLF 177 (313)
Q Consensus 106 v~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~-------v~~k~~~-~~~~~~~~~~~~~~ 177 (313)
+++.... +...+ ++ .++++.++.+..+|.++++++.+.++.|. ...+... .+. ++.....-++
T Consensus 148 i~l~s~A-g~~k~----~~---~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~-~~~~~~lp~~ 218 (345)
T PRK13499 148 VAIVGRA-GQLKE----RK---MGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGV-DPLYAALPSY 218 (345)
T ss_pred HHHHHHh-hhhcc----cc---cccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCC-CchHHHHHHH
Confidence 9988531 10000 00 00000234566789999999999999999 4443311 122 2322222222
Q ss_pred H---HHHHHHHHH-HHH---hccCCC---cccccc---hhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeee---ch-
Q 021377 178 F---FNTILSTAF-ALI---VVSEPS---DWKLGL---DIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSM---FK- 240 (313)
Q Consensus 178 ~---~~~~~~~~~-~~~---~~~~~~---~~~~~~---~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~---~~- 240 (313)
. .|..+.-.. ..+ ..++.. +..... ......-+..|+ .=.++..+|..+-++.+...... +.
T Consensus 219 ~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~-~W~~~~~~y~~~~~~~g~~~~~~sw~l~m 297 (345)
T PRK13499 219 VVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGV-MWYLQFFFYAMGHSKLGAQYDFVSWMLHM 297 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCccchHHHHHhc
Confidence 2 343333221 111 111111 111110 112222233333 34466677777777776554433 33
Q ss_pred hhHHHHHHHHHHHHhcCccc------hhhHHHHHHHHHHHHHHhcc
Q 021377 241 PLAIVFSIVMDVVIVGDAFC------LGSLIGAMIIVAGFYAVMWG 280 (313)
Q Consensus 241 ~~~pv~a~i~~~l~~ge~~~------~~~~~G~~lii~g~~l~~~~ 280 (313)
-+..+++.+++. +++|.=+ ...++|.++++.|..+....
T Consensus 298 ~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 298 SFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred cHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 667799999998 5999766 45678999999999887654
No 57
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.44 E-value=9.6e-07 Score=67.98 Aligned_cols=68 Identities=16% Similarity=0.146 Sum_probs=62.4
Q ss_pred HHHHHHH-HHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhhe
Q 021377 37 FLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 110 (313)
Q Consensus 37 ~~~g~~~-~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 110 (313)
...++++ ..+++++..++++.|.+.+-.+.++.|+++.+++++++|||++++ +++|+.+.+.|+.++.
T Consensus 40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 3445566 889999999999999999999988999999999999999999999 9999999999999874
No 58
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.33 E-value=7.7e-06 Score=71.95 Aligned_cols=141 Identities=11% Similarity=0.091 Sum_probs=111.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCccc-ccchhHHHHHHHHHHHHH
Q 021377 139 ILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWK-LGLDIGLVAVLYSAVIGT 217 (313)
Q Consensus 139 ~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~g~~~s 217 (313)
..|.++++.+-+.|+.-....|.+ ++.| +..+..++.+.+.+....+.....+...-++ ...+..+...+..++ -.
T Consensus 6 ~~Gil~~l~Ay~lwG~lp~y~kll-~~~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~-li 82 (293)
T COG2962 6 RKGILLALLAYLLWGLLPLYFKLL-EPLP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTAL-LI 82 (293)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHH-ccCC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHH-HH
Confidence 369999999999999998888765 5564 8899999999998888777654432111111 122335556666666 44
Q ss_pred HHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcccc
Q 021377 218 GFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKS 282 (313)
Q Consensus 218 ~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~~~ 282 (313)
+.-+.+|.|+..+..+..+|+--++.|++.+++|.++++|+++..|++..++..+|+..-.+...
T Consensus 83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g 147 (293)
T COG2962 83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG 147 (293)
T ss_pred HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC
Confidence 58899999999999999999999999999999999999999999999999999999987765443
No 59
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.31 E-value=1.9e-05 Score=70.58 Aligned_cols=141 Identities=18% Similarity=0.257 Sum_probs=105.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHH
Q 021377 139 ILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTG 218 (313)
Q Consensus 139 ~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~ 218 (313)
..+....+..++.|+......|...++..+.....+.+...+.....+... .. ........ ..+......+.+...
T Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~--~~~~~~~~~~~~~~~ 81 (292)
T COG0697 6 LLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLL-LE-PRGLRPAL--RPWLLLLLLALLGLA 81 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHH-hh-cccccccc--cchHHHHHHHHHHHH
Confidence 457788888889999999999887776223555556577766666332222 11 11111111 124455666677888
Q ss_pred HHHHHHHHHhccCCceeeeechhhHHHHHHHHHH-HHhcCccchhhHHHHHHHHHHHHHHhccccc
Q 021377 219 FRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDV-VIVGDAFCLGSLIGAMIIVAGFYAVMWGKSK 283 (313)
Q Consensus 219 ~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~-l~~ge~~~~~~~~G~~lii~g~~l~~~~~~~ 283 (313)
..+.+|+.++++.++..++.+.+..|+++.++++ ++++|+++..++.|..+.+.|+.+..+....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~ 147 (292)
T COG0697 82 LPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG 147 (292)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence 9999999999999999999999999999999997 6679999999999999999999998765544
No 60
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.26 E-value=1.1e-05 Score=62.55 Aligned_cols=69 Identities=13% Similarity=0.272 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHhccCCceeeeec-hhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhccc
Q 021377 213 AVIGTGFRVGLCTWCLSRTGPLYVSMF-KPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGK 281 (313)
Q Consensus 213 g~~~s~~~~~l~~~a~~~~~a~~~s~~-~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~~ 281 (313)
.+++-++++.++.+++++.+.+.+=.+ .-+.-+.+.+.+++++||++++.+++|+.+|+.|+.......
T Consensus 36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 444667899999999999999887444 467888899999999999999999999999999998886544
No 61
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.25 E-value=3.2e-06 Score=76.54 Aligned_cols=96 Identities=17% Similarity=0.190 Sum_probs=77.7
Q ss_pred chhhhcchhhhhhcCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhh
Q 021377 4 LSILMPSPVSFFFSVPSYSTERPQLTFSILCSFFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRL 82 (313)
Q Consensus 4 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~ 82 (313)
++++++.|+.... .. ....+...+...+..|++. .+.+.++++++++.+++.++++.++.|+++.++++++++
T Consensus 185 ~~~~~l~~~~~~~----~~--~~~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lg 258 (293)
T PRK10532 185 IAALIFVPIGALQ----AG--EALWHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLG 258 (293)
T ss_pred HHHHHHHHHHHHc----cC--cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhC
Confidence 4455555655443 22 1223445555566788888 899999999999999999999999999999999999999
Q ss_pred hcccccccccCcchhhHHhhhhhhhhhee
Q 021377 83 EKLNWENKSSQAKSLGTFASIGGAFVVTF 111 (313)
Q Consensus 83 E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 111 (313)
|++++. +++|..+.+.|++....
T Consensus 259 E~~~~~------~~iG~~lIl~~~~~~~~ 281 (293)
T PRK10532 259 ETLTLI------QWLALGAIIAASMGSTL 281 (293)
T ss_pred CCCcHH------HHHHHHHHHHHHHHHHh
Confidence 999999 99999999999998853
No 62
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.24 E-value=1.3e-05 Score=72.53 Aligned_cols=131 Identities=11% Similarity=0.031 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHH
Q 021377 141 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFR 220 (313)
Q Consensus 141 G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~ 220 (313)
|.+++++++++|+...+..|+.. ..+ +.... ...++.++..........+. .. ....+..-+..|+ .-+++
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~-g~~-~~~~~--~~~~g~l~~~~~~~~~~~~~--~~--~~~~~~~g~l~G~-~w~ig 72 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG-GGP-YSQTL--GTTFGALILSIAIAIFVLPE--FW--ALSIFLVGLLSGA-FWALG 72 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC-CCH-HHHHH--HHHHHHHHHHHHHHHHhCCc--cc--ccHHHHHHHHHHH-HHHhh
Confidence 57899999999999999999875 443 43333 35555555554444332211 11 1113333333343 36688
Q ss_pred HHHHHHHhccCCceeeeechh-hHHHHHHHHHHHHhcCccchhh----HHHHHHHHHHHHHHhcc
Q 021377 221 VGLCTWCLSRTGPLYVSMFKP-LAIVFSIVMDVVIVGDAFCLGS----LIGAMIIVAGFYAVMWG 280 (313)
Q Consensus 221 ~~l~~~a~~~~~a~~~s~~~~-~~pv~a~i~~~l~~ge~~~~~~----~~G~~lii~g~~l~~~~ 280 (313)
+.+|..++++.+.+.+-++.+ ++++++.+++.+++||+.+..+ ++|.+++++|+++....
T Consensus 73 ~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~ 137 (290)
T TIGR00776 73 QINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS 137 (290)
T ss_pred hhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence 899999999999999988888 8999999999999999999999 99999999998887544
No 63
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=5.7e-06 Score=73.59 Aligned_cols=220 Identities=17% Similarity=0.159 Sum_probs=131.6
Q ss_pred HHHHHH-HHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhheeecCCC
Q 021377 38 LLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPP 116 (313)
Q Consensus 38 ~~g~~~-~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~ 116 (313)
..|++. .++...-|.|+.+.|.+..+.+..+.-+..++++..+++||+++. ..+|..++++|-.++.. ..|.
T Consensus 68 w~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~iV~-haP~ 140 (335)
T KOG2922|consen 68 WAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTIVI-HAPK 140 (335)
T ss_pred HHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEEEE-ecCc
Confidence 467777 888888999999999999999999999999999999999999999 99999999999999875 3331
Q ss_pred CcCCCCCCCCCCccC---CCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHH-------
Q 021377 117 LIGELSHSGSPRRLL---LSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTA------- 186 (313)
Q Consensus 117 ~~~~~~~~~~~~~~~---~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~------- 186 (313)
-+ +..+.. ....+.-.+.....++..++.-++. .|+ ++ ....+..|..+++.+-.+-
T Consensus 141 e~-------~i~t~~el~~~~~~~~Fliy~~~iil~~~il~~~--~~p---~~-g~tnilvyi~i~s~iGS~tV~svKal 207 (335)
T KOG2922|consen 141 EQ-------EIESVEEVWELATEPGFLVYVIIIILIVLILIFF--YAP---RY-GQTNILVYIGICSLIGSLTVMSVKAL 207 (335)
T ss_pred cc-------ccccHHHHHHHhcCccHHHHHHHHHHHHHHHhee--ecc---cc-cccceeehhhHhhhhcceeeeeHHHH
Confidence 11 111000 0000111112222222222222221 121 11 1112333333333331110
Q ss_pred ---HHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhh-HHHHHHHHHHHHhcCccch-
Q 021377 187 ---FALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPL-AIVFSIVMDVVIVGDAFCL- 261 (313)
Q Consensus 187 ---~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~-~pv~a~i~~~l~~ge~~~~- 261 (313)
+-+...+ ..+...+..|..++.+.. +...=..-.++|++..++..++++.++ -..+++.-+.++++|.-..
T Consensus 208 g~aiklt~~g---~~ql~~~~ty~~~l~~~~-~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~ 283 (335)
T KOG2922|consen 208 GIAIKLTFSG---NNQLFYPLTWIFLLVVAT-CVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQD 283 (335)
T ss_pred HHHHHHHhcC---CcccccHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 0011111 112222234544444443 444444555799999999999888776 5667778888889986443
Q ss_pred -----hhHHHHHHHHHHHHHHhccc
Q 021377 262 -----GSLIGAMIIVAGFYAVMWGK 281 (313)
Q Consensus 262 -----~~~~G~~lii~g~~l~~~~~ 281 (313)
....|...++.|+++..+.|
T Consensus 284 ~~~i~~~~~Gf~ti~~G~flL~~~k 308 (335)
T KOG2922|consen 284 ALDIAGELCGFVTIFLGIFLLHRTK 308 (335)
T ss_pred HHHHHHHHHhHHHhhheeeEeeeec
Confidence 35578888889988875433
No 64
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=98.08 E-value=8.2e-07 Score=75.93 Aligned_cols=230 Identities=12% Similarity=0.074 Sum_probs=150.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhh-hhHHHHHHHHHHHhhhcccccccccCcchhhHHhhh
Q 021377 25 RPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASI 103 (313)
Q Consensus 25 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~-~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~ 103 (313)
.|..+.+.+..-++.|.+-...+...+.|+++.+++.+..+.+ ++-+-+.+++.+.++|=.+..+.. .-.+++++.+
T Consensus 51 ~p~~T~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~I--lG~iAliliv 128 (288)
T COG4975 51 SPELTLTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQII--LGFIALILIV 128 (288)
T ss_pred cCccchhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHH--HHHHHHHHHH
Confidence 3556777777777888877999999999999999999999966 777888899999999977666100 0123455566
Q ss_pred hhhhhheeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Q 021377 104 GGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTIL 183 (313)
Q Consensus 104 ~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~ 183 (313)
+|+.+-.. +++. ++ +.++..+.-.|....+.|.+.|-.|.++.+... . |......- ..+|.++
T Consensus 129 iG~~lTs~-~~~~-----nk-------~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~--v-~g~saiLP-qAiGMv~ 191 (288)
T COG4975 129 IGIYLTSK-QDRN-----NK-------EEENPSNLKKGIVILLISTLGYVGYVVLFQLFD--V-DGLSAILP-QAIGMVI 191 (288)
T ss_pred HhheEeee-eccc-----cc-------cccChHhhhhheeeeeeeccceeeeEeeecccc--c-cchhhhhH-HHHHHHH
Confidence 67666532 1110 00 012234456899999999999999999877543 2 23322222 2333333
Q ss_pred HHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhh
Q 021377 184 STAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGS 263 (313)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~ 263 (313)
.....-.... +...+...+.-+.-|+ .=+++-..+..+-++.+..+.=.+.-+..+++.+-+.++++|+=|..+
T Consensus 192 ~ali~~~~~~-----~~~~~K~t~~nii~G~-~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkE 265 (288)
T COG4975 192 GALILGFFKM-----EKRFNKYTWLNIIPGL-IWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKE 265 (288)
T ss_pred HHHHHhhccc-----ccchHHHHHHHHhhHH-HHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhh
Confidence 2222211111 1111223333334444 234667777788888888777777778889999999999999988765
Q ss_pred H----HHHHHHHHHHHHHhc
Q 021377 264 L----IGAMIIVAGFYAVMW 279 (313)
Q Consensus 264 ~----~G~~lii~g~~l~~~ 279 (313)
+ +|.++++.|..+.-.
T Consensus 266 m~~v~iGiilivvgai~lg~ 285 (288)
T COG4975 266 MVYVIIGIILIVVGAILLGI 285 (288)
T ss_pred hhhhhhhHHHHHHHhhhhhe
Confidence 4 688888888776543
No 65
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.96 E-value=0.00015 Score=66.43 Aligned_cols=139 Identities=14% Similarity=0.115 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHH
Q 021377 140 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGF 219 (313)
Q Consensus 140 ~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~ 219 (313)
.|.+++++-+..-...+.+..+ .-+. |..-+++.+..-.++..+....- .+...+.......|+..+.+++ .-..
T Consensus 17 lgQ~lsl~~~~t~~~s~~l~~~-~~~~--P~~Qs~~~Y~~l~~vy~~~~~~r-~~~~~~~~~~~~~~w~y~lla~-~Dv~ 91 (334)
T PF06027_consen 17 LGQVLSLCITGTGTFSSLLANK-GVNI--PTFQSFFNYVLLALVYTPILLYR-RGFKKWLKVLKRPWWKYFLLAL-LDVE 91 (334)
T ss_pred HHHHHHHHHHhHHHHHHHHHhc-CccC--cHHHHHHHHHHHHHHHhhhhhhc-cccccchhhcchhHHHHHHHHH-HHHH
Confidence 3555555444444444444443 2222 44444444444444444433322 1222222222234555555666 5668
Q ss_pred HHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhccccc
Q 021377 220 RVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSK 283 (313)
Q Consensus 220 ~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~~~~ 283 (313)
+-.++..|+++++.+.+.++.....++++++++++++++.++.+++|+++.+.|+.+....+..
T Consensus 92 aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~ 155 (334)
T PF06027_consen 92 ANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVL 155 (334)
T ss_pred HHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeeccc
Confidence 8999999999999999999999999999999999999999999999999999999988766543
No 66
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.95 E-value=0.00011 Score=56.21 Aligned_cols=68 Identities=19% Similarity=0.213 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHhccCCceee-eechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhccc
Q 021377 214 VIGTGFRVGLCTWCLSRTGPLYV-SMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGK 281 (313)
Q Consensus 214 ~~~s~~~~~l~~~a~~~~~a~~~-s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~~ 281 (313)
+++-++++.++..++++.+.+.+ +...-+..+.+.+.+++++||++++.+++|+.+|+.|+.......
T Consensus 37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44566888888999999888877 333557788889999999999999999999999999999986443
No 67
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.84 E-value=0.00024 Score=64.65 Aligned_cols=129 Identities=17% Similarity=0.166 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHhhhch-h--HHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 021377 152 NSAWFILQALILRKFA-A--VLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCL 228 (313)
Q Consensus 152 ~a~~~v~~k~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~ 228 (313)
+..+.+.+++..++.+ . +..+++.++.+..+...+.......+ +... ..+...+..++ ...++..+-+.++
T Consensus 12 ~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~-~~~~~~~~~~~al 85 (303)
T PF08449_consen 12 CCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFP--KSRK---IPLKKYAILSF-LFFLASVLSNAAL 85 (303)
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccc--CCCc---ChHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3345566777655432 3 67888888888887776655433311 1111 12333344444 5667888899999
Q ss_pred ccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcccccccc
Q 021377 229 SRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEK 286 (313)
Q Consensus 229 ~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~~~~~~~ 286 (313)
++++...-.+.....|+.++++++++++++.+..++.+.+++.+|+.+....+.++.+
T Consensus 86 ~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~ 143 (303)
T PF08449_consen 86 KYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS 143 (303)
T ss_pred HhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc
Confidence 9999999999999999999999999999999999999999999999998876655443
No 68
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.84 E-value=4.9e-05 Score=68.86 Aligned_cols=121 Identities=13% Similarity=0.115 Sum_probs=88.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHH
Q 021377 136 LSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVI 215 (313)
Q Consensus 136 ~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~ 215 (313)
.++..|..+++.|+++.+....++|+...+.+ ......- .+....+. .+ .| +.|++
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~-~~~~~~~----------------~~~~~~l~--~~-~W----~~G~~ 58 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLP-RGSLRAG----------------SGGRSYLR--RP-LW----WIGLL 58 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccccccc----------------chhhHHHh--hH-HH----HHHHH
Confidence 35678999999999999999999998766653 1000000 00000011 01 22 23333
Q ss_pred HHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcc
Q 021377 216 GTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG 280 (313)
Q Consensus 216 ~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~ 280 (313)
...++..+...++...+++.++++..+.-++..+++..+++|+++...+.|.++++.|..+....
T Consensus 59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~ 123 (300)
T PF05653_consen 59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIF 123 (300)
T ss_pred HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEe
Confidence 44566677788899999999999999999999999999999999999999999999999876543
No 69
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.83 E-value=3.7e-06 Score=72.84 Aligned_cols=133 Identities=12% Similarity=0.212 Sum_probs=93.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHH
Q 021377 139 ILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTG 218 (313)
Q Consensus 139 ~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~ 218 (313)
..|..+..++ ..+-...++.++.... ||....-.++++-.+...|..++...+. ..+..-..+++.=|+.++
T Consensus 37 ~~gl~l~~vs-~ff~~~~vv~t~~~e~--~p~e~a~~r~l~~mlit~pcliy~~~~v----~gp~g~R~~LiLRg~mG~- 108 (346)
T KOG4510|consen 37 NLGLLLLTVS-YFFNSCMVVSTKVLEN--DPMELASFRLLVRMLITYPCLIYYMQPV----IGPEGKRKWLILRGFMGF- 108 (346)
T ss_pred ccCceehhhH-HHHhhHHHhhhhhhcc--ChhHhhhhhhhhehhhhheEEEEEeeee----ecCCCcEEEEEeehhhhh-
Confidence 4688888888 6666777777777665 4566665665555544444443322111 111111112233333222
Q ss_pred HHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhc
Q 021377 219 FRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMW 279 (313)
Q Consensus 219 ~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~ 279 (313)
.+.++.++++++.+-+.++.+.+..|+++++++|++++|+.+....+|..+.+.|+.++.+
T Consensus 109 tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvR 169 (346)
T KOG4510|consen 109 TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVR 169 (346)
T ss_pred hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEec
Confidence 5667778999999999999999999999999999999999999999999999999988754
No 70
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.81 E-value=6.2e-05 Score=59.42 Aligned_cols=69 Identities=20% Similarity=0.353 Sum_probs=63.3
Q ss_pred HHHHHHHH-HHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHH--HhhhcccccccccCcchhhHHhhhhhhhhhe
Q 021377 36 FFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAII--FRLEKLNWENKSSQAKSLGTFASIGGAFVVT 110 (313)
Q Consensus 36 ~~~~g~~~-~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~--~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 110 (313)
.+..|+.. .+++.++..++++.+.+.+..+.+..+.++.+.++. +++|++++. +++|+++.++|+.++.
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence 46678888 999999999999999999999999999888888885 899999999 9999999999999985
No 71
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.79 E-value=0.00034 Score=53.37 Aligned_cols=63 Identities=10% Similarity=0.185 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHhccCCceee-eechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHH
Q 021377 215 IGTGFRVGLCTWCLSRTGPLYV-SMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAV 277 (313)
Q Consensus 215 ~~s~~~~~l~~~a~~~~~a~~~-s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~ 277 (313)
++-++++.+...++|+++...+ +...-+-.+.+.+.+++++||++++.+++|+.+++.|+...
T Consensus 43 ~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 43 AAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 3556889999999999998877 55666778888999999999999999999999999999875
No 72
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.75 E-value=0.00027 Score=53.21 Aligned_cols=65 Identities=23% Similarity=0.401 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhccCCceee-eechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcc
Q 021377 216 GTGFRVGLCTWCLSRTGPLYV-SMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG 280 (313)
Q Consensus 216 ~s~~~~~l~~~a~~~~~a~~~-s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~ 280 (313)
+-.++|.+..+++++++...+ +...-+-.+.+.+.+++++||++++.+++|..++++|+......
T Consensus 39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 456788888888888887776 66677778889999999999999999999999999999887654
No 73
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.65 E-value=0.00057 Score=51.86 Aligned_cols=65 Identities=17% Similarity=0.315 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHhccCCceee-eechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHh
Q 021377 214 VIGTGFRVGLCTWCLSRTGPLYV-SMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM 278 (313)
Q Consensus 214 ~~~s~~~~~l~~~a~~~~~a~~~-s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~ 278 (313)
+++-++++.+...++|+.+...+ +...-+-.+.+.+.+++++||++++.+++|..+++.|+....
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 34567888999999999888877 566667888899999999999999999999999999998864
No 74
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.63 E-value=0.00012 Score=59.41 Aligned_cols=98 Identities=18% Similarity=0.311 Sum_probs=78.5
Q ss_pred ccchhhhcchhhhhhcCCCCCCCC----C-----CC--CHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhH
Q 021377 2 SSLSILMPSPVSFFFSVPSYSTER----P-----QL--TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIP 70 (313)
Q Consensus 2 ~~~~~l~l~~~~~~~~~~~~~~~~----~-----~~--~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P 70 (313)
+..+.++++|..+.. ++.+. . +. ..+.+..++..|+++...+.+.+..++++++...+++...-.
T Consensus 43 ~~~s~~~l~~~~~~~----e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~ 118 (153)
T PF03151_consen 43 SPISFIILLPLAFLL----EGPQLSSFFSEIFGEELSSDPNFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKR 118 (153)
T ss_pred HHHHHHHHHHHHHHH----hhhhhhhHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHH
Confidence 445667777776665 43321 0 00 224456666777777999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhh
Q 021377 71 AFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 109 (313)
Q Consensus 71 ~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll 109 (313)
+.+.++++++++|+++.. ++.|+.+++.|+++-
T Consensus 119 ~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~Y 151 (153)
T PF03151_consen 119 ILVILLSVIFFGEPITPL------QIIGIVLALVGVLLY 151 (153)
T ss_pred HHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhee
Confidence 999999999999999999 999999999998763
No 75
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.62 E-value=0.0012 Score=52.75 Aligned_cols=131 Identities=15% Similarity=0.136 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHH
Q 021377 142 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRV 221 (313)
Q Consensus 142 ~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~ 221 (313)
.++++++.++-++...++.++.++..+|..-++..+..|.+.......+..++ +........|+..+ -|+ ...+--
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~~l-GG~-lG~~~V 78 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWAYL-GGL-LGVFFV 78 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHHhc-cHH-HHHHHH
Confidence 57888899999999999999888874599999999999999988887766542 22211122333322 444 334555
Q ss_pred HHHHHHhccCCceeeeechhh-HHHHHHHHHHH----HhcCccchhhHHHHHHHHHHHHH
Q 021377 222 GLCTWCLSRTGPLYVSMFKPL-AIVFSIVMDVV----IVGDAFCLGSLIGAMIIVAGFYA 276 (313)
Q Consensus 222 ~l~~~a~~~~~a~~~s~~~~~-~pv~a~i~~~l----~~ge~~~~~~~~G~~lii~g~~l 276 (313)
.+....++++|+......... |-+.+++++.+ .-++++++.+++|.++++.|+.+
T Consensus 79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 667788899998887655544 77777888875 24468999999999999999863
No 76
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.50 E-value=0.0012 Score=58.51 Aligned_cols=80 Identities=13% Similarity=0.108 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeech-hhHHHHHHHHHHHHhcCccchhhHH----HHHHHHHHHHHHhc
Q 021377 205 GLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFK-PLAIVFSIVMDVVIVGDAFCLGSLI----GAMIIVAGFYAVMW 279 (313)
Q Consensus 205 ~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~-~~~pv~a~i~~~l~~ge~~~~~~~~----G~~lii~g~~l~~~ 279 (313)
.+..-+..|+ .=.+++..+++++++.|.+++-++. -++-+.+.++++++|||+-+..+++ +.+++++|+++..+
T Consensus 44 ~~~~~~lsG~-~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 44 SFIVAFLSGA-FWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 5555666777 4559999999999999999999887 5677789999999999998876654 67778899998877
Q ss_pred cccccc
Q 021377 280 GKSKEE 285 (313)
Q Consensus 280 ~~~~~~ 285 (313)
.+++++
T Consensus 123 ~~~~~~ 128 (269)
T PF06800_consen 123 QDKKSD 128 (269)
T ss_pred cccccc
Confidence 666544
No 77
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.41 E-value=0.001 Score=49.45 Aligned_cols=56 Identities=20% Similarity=0.351 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhccCCceee-eechhhHHHHHHHHHHHHhcCccchhhHHHHHHH
Q 021377 215 IGTGFRVGLCTWCLSRTGPLYV-SMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMII 270 (313)
Q Consensus 215 ~~s~~~~~l~~~a~~~~~a~~~-s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~li 270 (313)
.+-++++.++.+++|+.+.+.+ ....-+..+.+.+.+++++||++++.+++|..+|
T Consensus 37 ~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 37 VGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3667889999999999999998 4455688999999999999999999999999875
No 78
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.36 E-value=0.00067 Score=51.79 Aligned_cols=60 Identities=12% Similarity=0.034 Sum_probs=55.7
Q ss_pred HHHHHHHHHhccccChhhH-hHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhh
Q 021377 44 CSSQIFSFVGIQYSSPTLS-TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 109 (313)
Q Consensus 44 ~~~~~~~~~al~~~~~~~a-~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll 109 (313)
..+++++..++++.|.+.+ ++....--+.+.+.+.+++||++++. +++|+.+.+.|++.+
T Consensus 46 ~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l 106 (109)
T PRK10650 46 LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence 8899999999999999998 56677888999999999999999999 999999999999886
No 79
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.28 E-value=0.00084 Score=52.17 Aligned_cols=66 Identities=17% Similarity=0.178 Sum_probs=58.5
Q ss_pred HHHHH-HHHHHHHHHhccccChhhHhHh-hhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhhe
Q 021377 39 LSVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 110 (313)
Q Consensus 39 ~g~~~-~~~~~~~~~al~~~~~~~a~ii-~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 110 (313)
..+.. ..+++++..++++.|.+.+=.+ ....-+.+.+++.++++|++++. +++|+.+.++|++.+-
T Consensus 35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~ 102 (120)
T PRK10452 35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIK 102 (120)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhh
Confidence 34445 8999999999999999998555 56888999999999999999999 9999999999999884
No 80
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.26 E-value=0.0011 Score=50.34 Aligned_cols=63 Identities=10% Similarity=-0.030 Sum_probs=57.4
Q ss_pred HHH-HHHHHHHHHhccccChhhH-hHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhh
Q 021377 41 VFG-CSSQIFSFVGIQYSSPTLS-TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 109 (313)
Q Consensus 41 ~~~-~~~~~~~~~al~~~~~~~a-~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll 109 (313)
+.+ ..+++++..++++.|.+.+ ++....--+.+.+++.+++||++++. +++|+.+.+.|++.+
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l 100 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhh
Confidence 444 8899999999999999998 56677888999999999999999999 999999999999987
No 81
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.26 E-value=0.0008 Score=50.68 Aligned_cols=64 Identities=14% Similarity=0.101 Sum_probs=58.2
Q ss_pred HHHH-HHHHHHHHHhccccChhhH-hHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhh
Q 021377 40 SVFG-CSSQIFSFVGIQYSSPTLS-TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 109 (313)
Q Consensus 40 g~~~-~~~~~~~~~al~~~~~~~a-~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll 109 (313)
.+.+ ..++.++..+++++|.+.+ ++....--+.+++.++++++|+.++. +++|+.+.+.|++.+
T Consensus 36 ~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~L 101 (106)
T COG2076 36 TIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGL 101 (106)
T ss_pred HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHh
Confidence 3444 8899999999999999998 67778899999999999999999999 999999999999987
No 82
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.23 E-value=0.0012 Score=50.56 Aligned_cols=65 Identities=15% Similarity=0.234 Sum_probs=57.9
Q ss_pred HHHH-HHHHHHHHHhccccChhhHhHh-hhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhhe
Q 021377 40 SVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 110 (313)
Q Consensus 40 g~~~-~~~~~~~~~al~~~~~~~a~ii-~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 110 (313)
.+.. ..+++++..++++.|.+.+=.+ ....-+.+.+++++++||++++. ++.|+.+.++|++.+-
T Consensus 36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~ 102 (110)
T PRK09541 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVIN 102 (110)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 4555 8889999999999999998544 66888999999999999999999 9999999999999984
No 83
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.10 E-value=0.0096 Score=47.87 Aligned_cols=138 Identities=14% Similarity=0.141 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHH
Q 021377 140 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGF 219 (313)
Q Consensus 140 ~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~ 219 (313)
...++++++.++..+..-++.++.+...+|..-.+..+.+|++.+..+.++.++ ..++....+..|+..+ -|+++. +
T Consensus 5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~-~~~~a~~~~~pwW~~~-GG~lGa-~ 81 (150)
T COG3238 5 LYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQG-HPGLAAVASAPWWAWI-GGLLGA-I 81 (150)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcC-CCchhhccCCchHHHH-ccchhh-h
Confidence 567888999999999999999988887678999999999999999888877443 2223211121232222 222222 1
Q ss_pred HHHHHHHHhccCCceee-eechhhHHHHHHHHHHHHhc----CccchhhHHHHHHHHHHHHHHhcc
Q 021377 220 RVGLCTWCLSRTGPLYV-SMFKPLAIVFSIVMDVVIVG----DAFCLGSLIGAMIIVAGFYAVMWG 280 (313)
Q Consensus 220 ~~~l~~~a~~~~~a~~~-s~~~~~~pv~a~i~~~l~~g----e~~~~~~~~G~~lii~g~~l~~~~ 280 (313)
--..-....++.+++.. .....-|-+.+++.+-+=+. .+++...++|++++++|+++..+.
T Consensus 82 ~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~ 147 (150)
T COG3238 82 FVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRF 147 (150)
T ss_pred hhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccc
Confidence 11222344566665544 44555577777777765443 578999999999999996665544
No 84
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.06 E-value=0.0049 Score=56.70 Aligned_cols=137 Identities=12% Similarity=0.076 Sum_probs=90.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHH----HHhccCC-CcccccchhHHHHHHHH
Q 021377 138 WILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFA----LIVVSEP-SDWKLGLDIGLVAVLYS 212 (313)
Q Consensus 138 ~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~ll~~ 212 (313)
...|+++.+++++||+-+.+-.|+ .++. +.... |- ..+....+... .+..++. ......+...+..-+..
T Consensus 5 ~~~G~~~~~i~~~~~GS~~~p~K~-~k~w--~wE~~-W~-v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~ 79 (345)
T PRK13499 5 IILGIIWHLIGGASSGSFYAPFKK-VKKW--SWETM-WS-VGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLF 79 (345)
T ss_pred hHHHHHHHHHHHHHhhcccccccc-cCCC--chhHH-HH-HHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHH
Confidence 467999999999999999999988 4544 22222 33 22221111111 1111111 12221223345555556
Q ss_pred HHHHHHHHHHHHHHHhccCCceeeeec-hhhHHHHHHHHHHHHhcCcc---c----hhhHHHHHHHHHHHHHHhcc
Q 021377 213 AVIGTGFRVGLCTWCLSRTGPLYVSMF-KPLAIVFSIVMDVVIVGDAF---C----LGSLIGAMIIVAGFYAVMWG 280 (313)
Q Consensus 213 g~~~s~~~~~l~~~a~~~~~a~~~s~~-~~~~pv~a~i~~~l~~ge~~---~----~~~~~G~~lii~g~~l~~~~ 280 (313)
|+ .=.+++..+..++++.|.+..-++ .-++-+.+.+++.+++||.. + ....+|.+++++|+.+..+.
T Consensus 80 G~-~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A 154 (345)
T PRK13499 80 GA-LWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA 154 (345)
T ss_pred HH-HHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 66 455999999999999999988655 45788999999999999865 2 24667899999999998873
No 85
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=96.83 E-value=0.0035 Score=55.13 Aligned_cols=67 Identities=18% Similarity=0.279 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcccccc
Q 021377 218 GFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKE 284 (313)
Q Consensus 218 ~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~~~~~ 284 (313)
.+.-.+.+.++++.+|+...+...+..++++++++++++.+++..||.+..++++|+.+........
T Consensus 28 ~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 28 AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 3555677789999999999999999999999999999999999999999999999999987655443
No 86
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=96.68 E-value=0.0052 Score=53.30 Aligned_cols=94 Identities=17% Similarity=0.155 Sum_probs=76.3
Q ss_pred cchhhhcchhhhhhcCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHh
Q 021377 3 SLSILMPSPVSFFFSVPSYSTERPQLTFSILCSFFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFR 81 (313)
Q Consensus 3 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~ 81 (313)
.+++++.+|+..-. ... .-.++.-....+..|+++ .+.+.+--.++++.|....+++.++.|.+.++.+++++
T Consensus 185 ~vAaviv~Pig~~~----ag~--~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L 258 (292)
T COG5006 185 LVAALIVLPIGAAQ----AGP--ALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFL 258 (292)
T ss_pred HHHHHHHhhhhhhh----cch--hhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHh
Confidence 35667777876543 221 113455566677889999 99999999999999999999999999999999999999
Q ss_pred hhcccccccccCcchhhHHhhhhhhhh
Q 021377 82 LEKLNWENKSSQAKSLGTFASIGGAFV 108 (313)
Q Consensus 82 ~E~~~~~~~~~~~~~~g~~l~~~Gv~l 108 (313)
+|++++. ||.++...+.+..=
T Consensus 259 ~e~ls~~------qwlaI~~ViaAsaG 279 (292)
T COG5006 259 GETLTLI------QWLAIAAVIAASAG 279 (292)
T ss_pred cCCCCHH------HHHHHHHHHHHHhc
Confidence 9999999 99998887776653
No 87
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.46 E-value=0.009 Score=44.31 Aligned_cols=56 Identities=20% Similarity=0.125 Sum_probs=34.1
Q ss_pred HHHH-HHHHHHHHHhccccChhhH-hHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHh
Q 021377 40 SVFG-CSSQIFSFVGIQYSSPTLS-TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFA 101 (313)
Q Consensus 40 g~~~-~~~~~~~~~al~~~~~~~a-~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l 101 (313)
.+.. ..+++++..++++.|.+.+ .+...+..+.+.+.+.++++|++++. ++.|+.+
T Consensus 35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~------~~~gi~l 92 (93)
T PF00893_consen 35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLS------KWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHhheee
Confidence 3334 8888999999999999999 55567999999999999999999999 9999875
No 88
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.45 E-value=0.0015 Score=56.27 Aligned_cols=132 Identities=10% Similarity=0.026 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHH
Q 021377 141 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFR 220 (313)
Q Consensus 141 G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~ 220 (313)
+.+.+++=++.|+......-|... +|..-+.- +.+|+++.....+++..+...+ ..+..-+..|.+ =.++
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~GG---~p~qQ~lG-tT~GALifaiiv~~~~~p~~T~-----~~~iv~~isG~~-Ws~G 72 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFGG---KPYQQTLG-TTLGALIFAIIVFLFVSPELTL-----TIFIVGFISGAF-WSFG 72 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecCC---ChhHhhhh-ccHHHHHHHHHHheeecCccch-----hhHHHHHHhhhH-hhhh
Confidence 567888899999987776654422 24443333 3444444444433332221111 134444455554 3489
Q ss_pred HHHHHHHhccCCceeeeechh-hHHHHHHHHHHHHhcCccchhhHH----HHHHHHHHHHHHhcccc
Q 021377 221 VGLCTWCLSRTGPLYVSMFKP-LAIVFSIVMDVVIVGDAFCLGSLI----GAMIIVAGFYAVMWGKS 282 (313)
Q Consensus 221 ~~l~~~a~~~~~a~~~s~~~~-~~pv~a~i~~~l~~ge~~~~~~~~----G~~lii~g~~l~~~~~~ 282 (313)
+..++++++..+.+++.++.. .+-+-+.+++++.++|+.++.+.+ ..++++.|+++..++++
T Consensus 73 Q~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~ 139 (288)
T COG4975 73 QANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR 139 (288)
T ss_pred hhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence 999999999999999998765 678888999999999999998763 45666788887666554
No 89
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.25 E-value=0.014 Score=44.74 Aligned_cols=109 Identities=11% Similarity=0.018 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 021377 147 AEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTW 226 (313)
Q Consensus 147 ~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~ 226 (313)
+-+++|+..+-+.||..+... +..-.. +..-... . ++. +|+ . ...+.....+...|++
T Consensus 3 ~Vg~~WG~Tnpfik~g~~~~~-~~~~~~-~~~~~~~-~----Ll~-----n~~-----y-----~ipf~lNq~GSv~f~~ 60 (113)
T PF10639_consen 3 LVGILWGCTNPFIKRGSSGLE-KVKASL-QLLQEIK-F----LLL-----NPK-----Y-----IIPFLLNQSGSVLFFL 60 (113)
T ss_pred eehHHhcCchHHHHHHHhhcC-CccchH-HHHHHHH-H----HHH-----hHH-----H-----HHHHHHHHHHHHHHHH
Confidence 346789999999998876653 221111 2111111 1 100 111 1 1233344567788999
Q ss_pred HhccCCceeeeech-hhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHH
Q 021377 227 CLSRTGPLYVSMFK-PLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAV 277 (313)
Q Consensus 227 a~~~~~a~~~s~~~-~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~ 277 (313)
.+++.+-+.+.++. .+.=+++++.++++.+|..+...++|+++++.|+.++
T Consensus 61 ~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 61 LLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 99999999999995 8899999999988888888889999999999998653
No 90
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=95.68 E-value=0.074 Score=46.89 Aligned_cols=127 Identities=12% Similarity=0.043 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccC-CCcccccchhH-----HHHHHHHHH
Q 021377 141 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSE-PSDWKLGLDIG-----LVAVLYSAV 214 (313)
Q Consensus 141 G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~ll~~g~ 214 (313)
|.+.+++++++++-..+=.||.... |++..-.+++....+...++.++.+.+ +.++....... ...+-..=.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~~g--Dg~~fQw~~~~~i~~~g~~v~~~~~~p~f~p~amlgG~lW~~gN~~~vpii~~ 78 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFDTG--DGFFFQWVMCSGIFLVGLVVNLILGFPPFYPWAMLGGALWATGNILVVPIIKT 78 (254)
T ss_pred CchhHHHHHHHhcccceeeEeccCC--CcHHHHHHHHHHHHHHHHHHHHhcCCCcceeHHHhhhhhhhcCceeehhHhhh
Confidence 5577888999999888877765433 576666555554444444444433211 11111111000 001111222
Q ss_pred HHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHH-HhcCc-----cchhhHHHHHHHHHHHHHHhcccccc
Q 021377 215 IGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVV-IVGDA-----FCLGSLIGAMIIVAGFYAVMWGKSKE 284 (313)
Q Consensus 215 ~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l-~~ge~-----~~~~~~~G~~lii~g~~l~~~~~~~~ 284 (313)
++-++++.+|.. .+-+.+-..+-+ +||+. -.+..++|++++++|..+....|.++
T Consensus 79 iGLglg~liW~s---------------~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 79 IGLGLGMLIWGS---------------VNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred hhhHHHHHHHHH---------------HHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 344566666632 122233232222 34432 23467899999999998887665554
No 91
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=95.67 E-value=0.0053 Score=55.77 Aligned_cols=125 Identities=17% Similarity=0.266 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHhh--hchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 021377 151 MNSAWFILQALILR--KFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCL 228 (313)
Q Consensus 151 ~~a~~~v~~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~ 228 (313)
+....++++|+..+ ..+-|..++...+.++.+.....-.....+..+ ..+...+..++-+|++ -.++..+-+.++
T Consensus 28 ~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~--~~~~~~~~~llpl~~~-~~~~~v~~n~Sl 104 (316)
T KOG1441|consen 28 LSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSK--ISSKLPLRTLLPLGLV-FCISHVLGNVSL 104 (316)
T ss_pred hheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCc--cccccchHHHHHHHHH-HHHHHHhcchhh
Confidence 33344557788888 566678888887777766666554433222222 2223367777778874 458888899999
Q ss_pred ccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHh
Q 021377 229 SRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM 278 (313)
Q Consensus 229 ~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~ 278 (313)
++.+.+..-..-.++|++++++++++.+|+.+...+.-...++.|+.+..
T Consensus 105 ~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias 154 (316)
T KOG1441|consen 105 SYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIAS 154 (316)
T ss_pred hccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEee
Confidence 99999999999999999999999999999988765555555555544433
No 92
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=95.62 E-value=0.82 Score=41.81 Aligned_cols=242 Identities=15% Similarity=0.091 Sum_probs=136.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHh-HhhhhhHHHHHHHHHHHhhhcccc-cccccCcchhhHHhhhhh
Q 021377 28 LTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLST-AMLNLIPAFTFVLAIIFRLEKLNW-ENKSSQAKSLGTFASIGG 105 (313)
Q Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~-ii~~~~P~~~~l~a~~~~~E~~~~-~~~~~~~~~~g~~l~~~G 105 (313)
.+...++..++.|++-.+....|=.+++|+..+... +...+.-++-.++-.++.++--.. .+..++..++|+++.++|
T Consensus 68 ~~~~~l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiG 147 (344)
T PF06379_consen 68 TPASTLFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIG 147 (344)
T ss_pred CChhHHHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHH
Confidence 345667777888888888888889999999888764 444455555555555554432111 123344578999999999
Q ss_pred hhhheeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHH---h---hh-chhH----HHHHH
Q 021377 106 AFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALI---L---RK-FAAV----LIIMF 174 (313)
Q Consensus 106 v~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~---~---~~-~~~~----~~~~~ 174 (313)
++++.. -|. .. .++. ..+.++++..+|.+.++++.+.-|.+++-...- . .+ ..+| .....
T Consensus 148 Iai~g~-AG~-~K---e~~~----~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~v 218 (344)
T PF06379_consen 148 IAICGK-AGS-MK---EKEL----GEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYV 218 (344)
T ss_pred HHHHhH-HHH-hh---hhhh----ccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhh
Confidence 999853 111 10 0010 012345667799999999999888887744311 0 00 0011 11222
Q ss_pred HHHHHHHHHHHHHHHHh---ccCC---Ccccccc---hhHHHHHHHHHHHHHHHHHHHHHHHhccCCce----eeeechh
Q 021377 175 YLFFFNTILSTAFALIV---VSEP---SDWKLGL---DIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPL----YVSMFKP 241 (313)
Q Consensus 175 ~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~---~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~----~~s~~~~ 241 (313)
..+.-|.+.-+..+++. .++. .+..... ...+..-+..|+ .=...+.+|..+-.+.++. --.+.+.
T Consensus 219 vv~~GGf~tN~~yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~-lWy~qfffYg~G~s~lg~~~~~~sW~i~ma 297 (344)
T PF06379_consen 219 VVLWGGFITNLIYCLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGV-LWYSQFFFYGMGESKLGASGPFSSWAIHMA 297 (344)
T ss_pred hhhhhHHHHHHHHHHHHHhhcCCCccccccccccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCccccHHHHHHHH
Confidence 33334444444444332 1222 1222111 123333334444 2335555666776776643 3356677
Q ss_pred hHHHHHHHHHHHHhcCccc------hhhHHHHHHHHHHHHHHhcc
Q 021377 242 LAIVFSIVMDVVIVGDAFC------LGSLIGAMIIVAGFYAVMWG 280 (313)
Q Consensus 242 ~~pv~a~i~~~l~~ge~~~------~~~~~G~~lii~g~~l~~~~ 280 (313)
+..+++-+++. +++|.=+ ...++|.++++.++.++-+.
T Consensus 298 ~~vl~snvwGl-~lkEWKg~s~kt~~vl~~G~~vlI~s~~ivG~G 341 (344)
T PF06379_consen 298 LIVLFSNVWGL-ILKEWKGASKKTIRVLVLGIAVLILSVVIVGYG 341 (344)
T ss_pred HHHHHHHHHHH-HHHHhccCCcccHHHHHHHHHHHHHHHHHHhcc
Confidence 78888888886 5787422 23467888888887776543
No 93
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=94.98 E-value=0.06 Score=41.25 Aligned_cols=64 Identities=16% Similarity=0.188 Sum_probs=54.9
Q ss_pred HHHH-HHHHHHHHHhccccChhhHhHhh-hhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhh
Q 021377 40 SVFG-CSSQIFSFVGIQYSSPTLSTAML-NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 109 (313)
Q Consensus 40 g~~~-~~~~~~~~~al~~~~~~~a~ii~-~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll 109 (313)
.+.- -.+...|++.+...+.+.+..+. ++.=++|++.++++.+|..+++ .++|+.+...|+.+.
T Consensus 47 pf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 47 PFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeeee
Confidence 4444 77788899999999999999985 6777999999988888888888 999999999999764
No 94
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=94.74 E-value=1.7 Score=39.92 Aligned_cols=134 Identities=14% Similarity=0.136 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhch---hHHHHHHHHHHHHHHHHHHHHHHhccC-CCcc----c---ccc-----h
Q 021377 140 LGGFFLAAEAFMNSAWFILQALILRKFA---AVLIIMFYLFFFNTILSTAFALIVVSE-PSDW----K---LGL-----D 203 (313)
Q Consensus 140 ~G~~~~l~s~~~~a~~~v~~k~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~---~~~-----~ 203 (313)
.=.+..+...+.++......|+..+..+ .|.+..+..=+.-.+++....+...+. ...+ + ... .
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 3456677777788888887776544331 244555555455555555554433211 0000 0 000 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhc
Q 021377 204 IGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMW 279 (313)
Q Consensus 204 ~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~ 279 (313)
..+.+++|. +=--+++.+.++.+|++......+..+.++++.+++++++++..||...++...|+.+.+.
T Consensus 95 ~~vPa~iYa------lqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~ 164 (345)
T KOG2234|consen 95 VSVPALIYA------LQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQL 164 (345)
T ss_pred HHHHHHHHH------HhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhc
Confidence 112233332 2223677899999999999999999999999999999999999999999999999999883
No 95
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=94.71 E-value=0.058 Score=43.09 Aligned_cols=69 Identities=12% Similarity=0.136 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhh-hHHHHHHHHHH----HhhhcccccccccCcchhhHHhhhhhhhh
Q 021377 34 CSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNL-IPAFTFVLAII----FRLEKLNWENKSSQAKSLGTFASIGGAFV 108 (313)
Q Consensus 34 ~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~-~P~~~~l~a~~----~~~E~~~~~~~~~~~~~~g~~l~~~Gv~l 108 (313)
++...-|+++..+..+....+...+++.++.+.-. +-+...++.++ .-|+++++. |++|+++.++|+.+
T Consensus 65 ~w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~------r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 65 WWAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLR------RILGLALMIAGVIL 138 (138)
T ss_pred hHHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHH------HHHHHHHHHHHHhC
Confidence 34445799999999999999999999998877664 55666667764 357788888 99999999999864
No 96
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.32 E-value=0.011 Score=52.94 Aligned_cols=128 Identities=12% Similarity=0.108 Sum_probs=94.1
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHH
Q 021377 135 QLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAV 214 (313)
Q Consensus 135 ~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~ 214 (313)
..++..|.++++.|.+.-+....+.|+..++.. . ..-+ ..+++.... .-..-+.|+
T Consensus 16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~-~---~~~r-------------a~~gg~~yl-------~~~~Ww~G~ 71 (335)
T KOG2922|consen 16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAG-A---SGLR-------------AGEGGYGYL-------KEPLWWAGM 71 (335)
T ss_pred ccCceeeeeehhhccEEEeeehhhhHHHHHHHh-h---hccc-------------ccCCCcchh-------hhHHHHHHH
Confidence 345678999999999999999999998766642 1 0000 011111111 113345566
Q ss_pred HHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcccccccc
Q 021377 215 IGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEK 286 (313)
Q Consensus 215 ~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~~~~~~~ 286 (313)
+..++|-.+-+-+..-.+++.++++..++.+..++++..+++|+++....+|+++.++|-.+.....+++++
T Consensus 72 ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~ 143 (335)
T KOG2922|consen 72 LTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQE 143 (335)
T ss_pred HHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccc
Confidence 666677777777778899999999999999999999999999999999999999999998876655544443
No 97
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.31 E-value=0.68 Score=41.80 Aligned_cols=118 Identities=14% Similarity=0.211 Sum_probs=79.8
Q ss_pred HHHHHHHHhhhch--hHHHHHHHHHHHHHHHHHHHHHHh--ccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 021377 155 WFILQALILRKFA--AVLIIMFYLFFFNTILSTAFALIV--VSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSR 230 (313)
Q Consensus 155 ~~v~~k~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~ 230 (313)
-.+.+|.....++ .......+|.+.+.+........- +.+.-++.......-..+++.+-+-+ -.+++++
T Consensus 27 m~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t------~~~slk~ 100 (314)
T KOG1444|consen 27 MTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLFT------GSKSLKY 100 (314)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHHHHH------ccccccc
Confidence 3456777766554 334455588888877766654321 11222333222212223444433322 2377899
Q ss_pred CCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHh
Q 021377 231 TGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM 278 (313)
Q Consensus 231 ~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~ 278 (313)
++....+++..+.|+.+++.+.+++|.+++...+.....+++|.....
T Consensus 101 lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~ 148 (314)
T KOG1444|consen 101 LNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAA 148 (314)
T ss_pred cCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999998887654
No 98
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=91.94 E-value=0.12 Score=44.49 Aligned_cols=63 Identities=11% Similarity=0.100 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhh
Q 021377 40 SVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV 108 (313)
Q Consensus 40 g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~l 108 (313)
.+..+....+....+++.++..-++...+.++++.+++.++++|+++.. ++.|..+.+.|+.+
T Consensus 159 ~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~l 221 (222)
T TIGR00803 159 GLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATFL 221 (222)
T ss_pred HHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeEe
Confidence 3444677778888999999999999999999999999999999999999 99999999888753
No 99
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=91.88 E-value=0.09 Score=48.28 Aligned_cols=66 Identities=18% Similarity=0.297 Sum_probs=59.7
Q ss_pred HHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcccccc
Q 021377 219 FRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKE 284 (313)
Q Consensus 219 ~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~~~~~ 284 (313)
++.+.++.++...+++..+++....-+|+..++.++-+|++++..+++..+-+.|++++...+.+.
T Consensus 171 ~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 171 LANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 556678888999999999999999999999999999999999999999999999999988776654
No 100
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=91.84 E-value=4.4 Score=30.54 Aligned_cols=40 Identities=23% Similarity=0.233 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcccc
Q 021377 243 AIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKS 282 (313)
Q Consensus 243 ~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~~~ 282 (313)
-.+.+.++++.+-|++|+...++|..+.++|+.++.+..|
T Consensus 67 fI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR 106 (107)
T PF02694_consen 67 FIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR 106 (107)
T ss_pred HHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence 3677889999999999999999999999999998876544
No 101
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=91.50 E-value=0.29 Score=42.28 Aligned_cols=74 Identities=18% Similarity=0.241 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhh
Q 021377 30 FSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 109 (313)
Q Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll 109 (313)
+..++.+.+.++.+++++.|.|.-+.+-++-.-+++..+--+|+.+.+.++++.+++.+ +|+|..+.+.|...=
T Consensus 238 P~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r------QwlgtvlVF~aL~~D 311 (337)
T KOG1580|consen 238 PYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR------QWLGTVLVFSALTAD 311 (337)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHHhhhH
Confidence 35577788889988999999999999999999999999999999999999999999999 999999988887653
No 102
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=90.27 E-value=0.1 Score=43.70 Aligned_cols=66 Identities=14% Similarity=0.293 Sum_probs=59.0
Q ss_pred HHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhccccccc
Q 021377 220 RVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEE 285 (313)
Q Consensus 220 ~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~~~~~~ 285 (313)
+-+.|..++++++++.++.+..-..-+.-+++++.+|+++....++..++.+.|+.+..+.++.++
T Consensus 66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a 131 (290)
T KOG4314|consen 66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHA 131 (290)
T ss_pred CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhh
Confidence 346788899999999999999999999999999999999999999999999999998877766544
No 103
>PRK02237 hypothetical protein; Provisional
Probab=89.87 E-value=1.3 Score=33.45 Aligned_cols=44 Identities=20% Similarity=0.206 Sum_probs=36.9
Q ss_pred chhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcccc
Q 021377 239 FKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKS 282 (313)
Q Consensus 239 ~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~~~ 282 (313)
+.-+-.+.++++++.+-|++|+...++|..+.++|+.++.+..|
T Consensus 65 YGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR 108 (109)
T PRK02237 65 YGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR 108 (109)
T ss_pred hhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence 33444677889999999999999999999999999988866543
No 104
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=88.44 E-value=3.2 Score=38.09 Aligned_cols=140 Identities=14% Similarity=0.118 Sum_probs=80.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHH--HHhccCCC-cccccchhHHHHHHHHH
Q 021377 137 SWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFA--LIVVSEPS-DWKLGLDIGLVAVLYSA 213 (313)
Q Consensus 137 ~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~ll~~g 213 (313)
+-..|.++-.+++++-+.+.+=.||. |+.+ =...=..+.+++-+ ..|.. ++.-++.. -....+...+......|
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkv-k~Ws-WEs~Wlv~gi~swl-i~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G 80 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKV-KGWS-WESYWLVQGIFSWL-IVPWLWALLAIPDFFSIYSATPASTLFWTFLFG 80 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhc-CCcc-HHHHHHHHHHHHHH-HHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence 34689999999999999999988875 4442 12222222233322 22322 22222221 11111222444445555
Q ss_pred HHHHHHHHHHHHHHhccCCceee-eechhhHHHHHHHHHHHHhc-------CccchhhHHHHHHHHHHHHHHhcc
Q 021377 214 VIGTGFRVGLCTWCLSRTGPLYV-SMFKPLAIVFSIVMDVVIVG-------DAFCLGSLIGAMIIVAGFYAVMWG 280 (313)
Q Consensus 214 ~~~s~~~~~l~~~a~~~~~a~~~-s~~~~~~pv~a~i~~~l~~g-------e~~~~~~~~G~~lii~g~~l~~~~ 280 (313)
+ -=+++-..|-.++|+++.+.. ++..-+.-+++.++--++.| ++-....++|.++.++|+.+..+.
T Consensus 81 ~-lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A 154 (344)
T PF06379_consen 81 V-LWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKA 154 (344)
T ss_pred H-HHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHH
Confidence 5 345777788888999887655 33344455555555444433 223346788999999999998764
No 105
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=85.70 E-value=1.2 Score=40.05 Aligned_cols=75 Identities=23% Similarity=0.303 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhh
Q 021377 29 TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV 108 (313)
Q Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~l 108 (313)
.++-++-+++...+++.++.+.|+-++.-++-.-++|+.+==+++.+++.+.++.++++. +|.|+.+.+.|+.+
T Consensus 237 hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~------q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 237 HPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSE------QWLGVLIVFGGIFL 310 (327)
T ss_pred ChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchh------hccCeeeehHHHHH
Confidence 445567788889999999999999999999999999999988999999999999999999 99999988888876
Q ss_pred h
Q 021377 109 V 109 (313)
Q Consensus 109 l 109 (313)
=
T Consensus 311 ~ 311 (327)
T KOG1581|consen 311 E 311 (327)
T ss_pred H
Confidence 4
No 106
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=85.43 E-value=2 Score=32.22 Aligned_cols=59 Identities=14% Similarity=0.140 Sum_probs=47.1
Q ss_pred HHHHHHHHHhccCCceeeeechhh-HHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHH
Q 021377 219 FRVGLCTWCLSRTGPLYVSMFKPL-AIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAV 277 (313)
Q Consensus 219 ~~~~l~~~a~~~~~a~~~s~~~~~-~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~ 277 (313)
.+..+|+..+++.+-+.+..+.+. .-.++.+.+..+-.|...-..++|..++++|+.++
T Consensus 64 cgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 64 CGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred hhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 455678888999999998877665 67778889987655666777889999999998875
No 107
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=84.74 E-value=34 Score=31.85 Aligned_cols=10 Identities=10% Similarity=-0.429 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 021377 216 GTGFRVGLCT 225 (313)
Q Consensus 216 ~s~~~~~l~~ 225 (313)
...+++.+..
T Consensus 72 ~~~~~~~~~~ 81 (385)
T PF03547_consen 72 IFILGLLLGF 81 (385)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 108
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=83.68 E-value=0.79 Score=41.14 Aligned_cols=131 Identities=8% Similarity=0.026 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCC-----C------cccccchhHHHHHHHHHH
Q 021377 146 AAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEP-----S------DWKLGLDIGLVAVLYSAV 214 (313)
Q Consensus 146 l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~------~~~~~~~~~~~~ll~~g~ 214 (313)
+++.+||+-+...+|...|+.. ......|=+.++.++..++..++-+.. + +........+..-+.-|+
T Consensus 2 ~itmlcwGSW~nt~kL~~r~gR-~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGGv 80 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAERRGR-LPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGGV 80 (336)
T ss_pred eeehhhhcChHHHHHHHHhcCC-ccceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhhH
Confidence 4677899999998887766542 112344555555554444432222111 1 111111112333334444
Q ss_pred HHHHHHHHHHHHHhccCCceeeeechhh-HHHHHHHHHHHHhcCccc--hhhHHHHHHHHHHHHHHhc
Q 021377 215 IGTGFRVGLCTWCLSRTGPLYVSMFKPL-AIVFSIVMDVVIVGDAFC--LGSLIGAMIIVAGFYAVMW 279 (313)
Q Consensus 215 ~~s~~~~~l~~~a~~~~~a~~~s~~~~~-~pv~a~i~~~l~~ge~~~--~~~~~G~~lii~g~~l~~~ 279 (313)
+ --++-++..+++...|.+++-++..- .-+.++++.|+ ++.+.+ .....|..++++++.+...
T Consensus 81 v-fnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~lga~ 146 (336)
T PF07168_consen 81 V-FNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIILGAA 146 (336)
T ss_pred h-hhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHHHHH
Confidence 3 33777777788888887777655432 33445555554 445554 2556788888888877553
No 109
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.46 E-value=2.1 Score=34.56 Aligned_cols=74 Identities=12% Similarity=0.090 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhh-hhHHHHHHHHHH-Hh---hhcccccccccCcchhhHHhhhh
Q 021377 30 FSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLN-LIPAFTFVLAII-FR---LEKLNWENKSSQAKSLGTFASIG 104 (313)
Q Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~-~~P~~~~l~a~~-~~---~E~~~~~~~~~~~~~~g~~l~~~ 104 (313)
.+..++...-|++|+.+-...........++....+.- -+-+...++..+ .+ ++++++. ++.|+++.++
T Consensus 66 ~~~pwW~~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~------r~lgi~L~l~ 139 (150)
T COG3238 66 ASAPWWAWIGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLP------RILGILLVLA 139 (150)
T ss_pred cCCchHHHHccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHH------HHHHHHHHHH
Confidence 44455666678888777777777778887777665544 444555555543 22 3556777 9999999999
Q ss_pred hhhhh
Q 021377 105 GAFVV 109 (313)
Q Consensus 105 Gv~ll 109 (313)
|++++
T Consensus 140 gil~~ 144 (150)
T COG3238 140 GILLA 144 (150)
T ss_pred HHHHh
Confidence 95554
No 110
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=82.54 E-value=2.8 Score=36.13 Aligned_cols=78 Identities=12% Similarity=0.096 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhh
Q 021377 27 QLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGA 106 (313)
Q Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv 106 (313)
.++.......++.|+...+-.++..+.++-++++.-+++..+.-...++.+.++++|+.+.. .+.++++++...
T Consensus 218 nl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~------si~sillGflsg 291 (309)
T COG5070 218 NLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFL------SIFSILLGFLSG 291 (309)
T ss_pred CCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHH------HHHHHHHHHHHH
Confidence 34555667788889988888889999999999999999999988888999999999999999 999999988766
Q ss_pred hhhe
Q 021377 107 FVVT 110 (313)
Q Consensus 107 ~ll~ 110 (313)
++-.
T Consensus 292 ~iYa 295 (309)
T COG5070 292 AIYA 295 (309)
T ss_pred HHHH
Confidence 6554
No 111
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=82.28 E-value=1.3 Score=39.43 Aligned_cols=65 Identities=14% Similarity=0.100 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcc
Q 021377 216 GTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG 280 (313)
Q Consensus 216 ~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~ 280 (313)
|-..+-.+.+.++..++++..-...-...+|+.+++.-+++.+++..+|.|+..+.+|+..+-..
T Consensus 95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 34445555666677777777777777788999999999999999999999999999999887543
No 112
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=80.10 E-value=1.8 Score=32.43 Aligned_cols=31 Identities=16% Similarity=0.323 Sum_probs=27.0
Q ss_pred HHHHHHHhcCccchhhHHHHHHHHHHHHHHh
Q 021377 248 IVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM 278 (313)
Q Consensus 248 ~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~ 278 (313)
+.+++++++|++++.++.|.++++.+++++.
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fiF 107 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYFIF 107 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhheee
Confidence 5678889999999999999999999887653
No 113
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=78.97 E-value=9.4 Score=34.54 Aligned_cols=123 Identities=14% Similarity=0.224 Sum_probs=79.8
Q ss_pred HHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCc--ccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCcee
Q 021377 158 LQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSD--WKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLY 235 (313)
Q Consensus 158 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~ 235 (313)
++|+..++.+=|..++.++..+=-......-...+..... -...+....-.++-.++ ++++=-.+-+++++.++.+.
T Consensus 34 ~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtal-ata~DIGLSN~sl~yVtlSl 112 (349)
T KOG1443|consen 34 YFKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTAL-ATALDIGLSNWSLEYVTLSL 112 (349)
T ss_pred HhhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhh-hhhcccccccceeeeeeeee
Confidence 3444445554466677666665443333332223221111 11111111212223444 67777788899999999999
Q ss_pred eeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhccc
Q 021377 236 VSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGK 281 (313)
Q Consensus 236 ~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~~ 281 (313)
-++.-...++|-.+++.++-=|++++....=..+|-.|+++..+..
T Consensus 113 YTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~Ks 158 (349)
T KOG1443|consen 113 YTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKS 158 (349)
T ss_pred eeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecc
Confidence 9999999999999999998889999988888888888887766543
No 114
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.10 E-value=5.9 Score=29.31 Aligned_cols=32 Identities=13% Similarity=0.304 Sum_probs=28.7
Q ss_pred HHHHHHHhcCccchhhHHHHHHHHHHHHHHhc
Q 021377 248 IVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMW 279 (313)
Q Consensus 248 ~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~ 279 (313)
+.++++.++|++.+.++.|..++..|++++.+
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 56789999999999999999999999988754
No 115
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=76.84 E-value=45 Score=28.24 Aligned_cols=33 Identities=12% Similarity=0.212 Sum_probs=23.6
Q ss_pred HHHHHHHhcCccchhhHHHHHHHH--HHHHHHhcc
Q 021377 248 IVMDVVIVGDAFCLGSLIGAMIIV--AGFYAVMWG 280 (313)
Q Consensus 248 ~i~~~l~~ge~~~~~~~~G~~lii--~g~~l~~~~ 280 (313)
-.+|..++++..-+...+|.++.+ +|.....++
T Consensus 133 ~~iG~~L~t~y~l~fe~~silLLvAmIGAI~La~~ 167 (198)
T PRK06638 133 KAIGILLFTDYLLPFELASVLLLVAMVGAIVLARR 167 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 455778888888888999988775 455554443
No 116
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.14 E-value=2.9 Score=37.17 Aligned_cols=109 Identities=20% Similarity=0.274 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccC-----CCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhh
Q 021377 168 AVLIIMFYLFFFNTILSTAFALIVVSE-----PSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPL 242 (313)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~ 242 (313)
.|..++.+++++...+...+......- ++..+..-. ....++=+.+ .-...-..-+.++++++...--.-..+
T Consensus 60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~-t~r~vlplsv-Vfi~mI~fnnlcL~yVgVaFYyvgRsL 137 (347)
T KOG1442|consen 60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLA-TARQVLPLSV-VFILMISFNNLCLKYVGVAFYYVGRSL 137 (347)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHH-HHHhhcchhh-eeeeehhccceehhhcceEEEEeccch
Confidence 578899999999988887776543221 111111100 1111111111 011222346788999999999999999
Q ss_pred HHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHh
Q 021377 243 AIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM 278 (313)
Q Consensus 243 ~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~ 278 (313)
..+|++++.+++++++-+..-..++.+|+.|..+..
T Consensus 138 ttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGv 173 (347)
T KOG1442|consen 138 TTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGV 173 (347)
T ss_pred hhhHHHHhHHhhcccccccccceeehhheehheecc
Confidence 999999999999999999988888999988877654
No 117
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=76.03 E-value=53 Score=32.35 Aligned_cols=41 Identities=10% Similarity=-0.019 Sum_probs=19.1
Q ss_pred echhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHh
Q 021377 238 MFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM 278 (313)
Q Consensus 238 ~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~ 278 (313)
......|+-+.++|.+.-.-.+.....++++.++++..+..
T Consensus 351 ~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 351 VFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 33444666677777654333333333333333344444433
No 118
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=67.53 E-value=6.9 Score=34.89 Aligned_cols=68 Identities=12% Similarity=0.218 Sum_probs=57.6
Q ss_pred HHHHHHHHhcc-CCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhccccccccc
Q 021377 220 RVGLCTWCLSR-TGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKT 287 (313)
Q Consensus 220 ~~~l~~~a~~~-~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~~~~~~~~ 287 (313)
.-.+-+++++. ++...--++..-.++.+++++|++.|.+-+..|+....++-+|+++.+..+.++.+.
T Consensus 77 vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~ 145 (330)
T KOG1583|consen 77 VNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS 145 (330)
T ss_pred eeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence 34556677664 777788888899999999999999999999999999999999999998877665543
No 119
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=66.94 E-value=1.6e+02 Score=30.50 Aligned_cols=45 Identities=13% Similarity=0.062 Sum_probs=32.5
Q ss_pred hhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhh
Q 021377 59 PTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 109 (313)
Q Consensus 59 ~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll 109 (313)
.+.+.++..++|+-.+.++.....+|.+.. .+.+.+-.+.|.+-+
T Consensus 10 lgRa~il~~l~PFg~af~~a~~~~~~~~~~------~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 10 LGRAVIVSPMAPFGIAFLAAVLLAKKGGDK------AFFSALGVLLGAISI 54 (764)
T ss_pred HhHHHHhcCCCchHHHHHHHHHHhhcccch------HHHHHHHHHHHHHHh
Confidence 466788889999999999998877775444 455555555666544
No 120
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=64.38 E-value=14 Score=29.27 Aligned_cols=17 Identities=18% Similarity=0.563 Sum_probs=9.7
Q ss_pred hhHHHHHHHHHHHHHHh
Q 021377 262 GSLIGAMIIVAGFYAVM 278 (313)
Q Consensus 262 ~~~~G~~lii~g~~l~~ 278 (313)
..++|..+.+.|+....
T Consensus 88 ~~i~g~~~~~~G~~~i~ 104 (136)
T PF08507_consen 88 SIIIGLLLFLVGVIYII 104 (136)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34456666666665443
No 121
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=61.47 E-value=15 Score=27.51 Aligned_cols=46 Identities=24% Similarity=0.250 Sum_probs=36.9
Q ss_pred eechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcccc
Q 021377 237 SMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKS 282 (313)
Q Consensus 237 s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~~~ 282 (313)
+.+.-+-.+.+.++.++.-|.+|+...++|..+-++|+.++....+
T Consensus 62 AAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~pR 107 (109)
T COG1742 62 AAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGPR 107 (109)
T ss_pred HHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCCC
Confidence 3444455778899999999999999999999999999877665543
No 122
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=59.66 E-value=1.4e+02 Score=28.76 Aligned_cols=15 Identities=33% Similarity=0.572 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHh
Q 021377 264 LIGAMIIVAGFYAVM 278 (313)
Q Consensus 264 ~~G~~lii~g~~l~~ 278 (313)
+.|+++++.++....
T Consensus 417 ~~~~~~~i~~~~~~~ 431 (476)
T PLN00028 417 LMGVMIIACTLPVAF 431 (476)
T ss_pred HHHHHHHHHHHHHHh
Confidence 445555555444433
No 123
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=58.09 E-value=24 Score=26.58 Aligned_cols=61 Identities=18% Similarity=0.188 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhccccChhhHhHhhh-hhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhh
Q 021377 43 GCSSQIFSFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 109 (313)
Q Consensus 43 ~~~~~~~~~~al~~~~~~~a~ii~~-~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll 109 (313)
+--+..+||.-++.++.+.+..+.+ +.-.|+++++..+.-|..-.+ .+.|..+..+|+.+.
T Consensus 62 NqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~------a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 62 NQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGL------ALLGTSLIVFGIWLC 123 (125)
T ss_pred HHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccce------eehhhhHHhhhhhhe
Confidence 3334557888899999999988866 566778888876655555556 789999999998775
No 124
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=57.39 E-value=15 Score=30.06 Aligned_cols=7 Identities=29% Similarity=0.586 Sum_probs=3.0
Q ss_pred ccccccC
Q 021377 286 KTTEDCG 292 (313)
Q Consensus 286 ~~~~~~~ 292 (313)
++.++.+
T Consensus 124 rktRkYg 130 (163)
T PF06679_consen 124 RKTRKYG 130 (163)
T ss_pred ccceeec
Confidence 3344444
No 125
>PRK15049 L-asparagine permease; Provisional
Probab=56.52 E-value=2e+02 Score=28.03 Aligned_cols=7 Identities=14% Similarity=-0.320 Sum_probs=3.4
Q ss_pred hhccccc
Q 021377 82 LEKLNWE 88 (313)
Q Consensus 82 ~E~~~~~ 88 (313)
.|--+++
T Consensus 244 eE~knP~ 250 (499)
T PRK15049 244 GECKDPQ 250 (499)
T ss_pred HHhcChh
Confidence 4544444
No 126
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=56.05 E-value=41 Score=30.07 Aligned_cols=75 Identities=13% Similarity=0.174 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhh
Q 021377 30 FSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 109 (313)
Q Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll 109 (313)
.|.....++.++.+.++..+...=+..-++..++.+...--..|.+++++++.++++.+ -..+..+.+.|+.+=
T Consensus 257 ~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~q------y~~~gllv~lgI~Ln 330 (367)
T KOG1582|consen 257 VRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQ------YVWSGLLVVLGIYLN 330 (367)
T ss_pred HhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHH------HhhhhHHHHHHHHhh
Confidence 34455555556655555555555555566777777777777899999999999999999 899999999999886
Q ss_pred e
Q 021377 110 T 110 (313)
Q Consensus 110 ~ 110 (313)
.
T Consensus 331 ~ 331 (367)
T KOG1582|consen 331 M 331 (367)
T ss_pred c
Confidence 4
No 127
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=55.46 E-value=89 Score=30.59 Aligned_cols=13 Identities=23% Similarity=0.294 Sum_probs=6.1
Q ss_pred hhHHhhhhhhhhh
Q 021377 97 LGTFASIGGAFVV 109 (313)
Q Consensus 97 ~g~~l~~~Gv~ll 109 (313)
-|++..+.|+++.
T Consensus 212 ~G~i~~~~gi~~f 224 (495)
T KOG2533|consen 212 EGVITLVLGIVVF 224 (495)
T ss_pred HHHHHHHHHheEE
Confidence 4444444554444
No 128
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=55.31 E-value=1.2e+02 Score=25.14 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=16.1
Q ss_pred HHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHh
Q 021377 159 QALILRKFAAVLIIMFYLFFFNTILSTAFALIV 191 (313)
Q Consensus 159 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (313)
.|+..++. +-.....+......+..+...++.
T Consensus 121 ~~~~~~R~-~~i~ag~~v~l~~~~~~l~~~l~~ 152 (194)
T PF07698_consen 121 VRRIRSRS-DIIKAGLLVGLVNALMILALGLIQ 152 (194)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444 355555555555555555555543
No 129
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=54.23 E-value=12 Score=29.91 Aligned_cols=24 Identities=4% Similarity=0.171 Sum_probs=15.8
Q ss_pred CCceeeeechhhHHHHHHHHHHHH
Q 021377 231 TGPLYVSMFKPLAIVFSIVMDVVI 254 (313)
Q Consensus 231 ~~a~~~s~~~~~~pv~a~i~~~l~ 254 (313)
-+..+.+.+.|+.|+++.+++.++
T Consensus 72 kslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 72 KSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566777788887777655
No 130
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=54.04 E-value=1.1e+02 Score=25.77 Aligned_cols=22 Identities=14% Similarity=0.070 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCC
Q 021377 211 YSAVIGTGFRVGLCTWCLSRTG 232 (313)
Q Consensus 211 ~~g~~~s~~~~~l~~~a~~~~~ 232 (313)
..|+++...-|.+|.++.++-+
T Consensus 132 l~a~vgGfamy~my~y~yr~~a 153 (226)
T COG4858 132 LTAVVGGFAMYIMYYYAYRMRA 153 (226)
T ss_pred HHHHhhhHHHHHHHHHHHHhhc
Confidence 3333333333444444444333
No 131
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=53.93 E-value=1.4e+02 Score=26.48 Aligned_cols=77 Identities=12% Similarity=0.033 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHH-HH-HhhhcccccccccCcchhhHHhhhhhhhhheeecC
Q 021377 37 FLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLA-II-FRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKG 114 (313)
Q Consensus 37 ~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a-~~-~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~ 114 (313)
++-|.+-+.++.+..-.++..+.+....+-.+.-+.+.-.. .+ +++++.... .......+|+++.++|..+..+.+.
T Consensus 59 mlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~-~~~~Ln~~G~~l~~~~~~~f~fik~ 137 (254)
T PF07857_consen 59 MLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVP-SSPWLNYIGVALVLVSGIIFSFIKS 137 (254)
T ss_pred HhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceecccccccc-chhHHHHHHHHHHHHHHHheeeecC
Confidence 33445447778888888888888888877765444444332 22 333322211 1123378999999999988865443
No 132
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=52.67 E-value=2.2e+02 Score=27.33 Aligned_cols=58 Identities=16% Similarity=-0.025 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcc
Q 021377 210 LYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG 280 (313)
Q Consensus 210 l~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~ 280 (313)
+=.++++....|++| .|++.-+...-+.. -.-.+..-+...++|.++.++.+.....+
T Consensus 247 Lqssvv~~Y~~yL~~-SAlss~P~~~CNp~------------~~~~~~~~~~~~iig~i~~~~~v~yss~r 304 (429)
T PF03348_consen 247 LQSSVVSLYTTYLTW-SALSSEPDKECNPS------------GSRSGSWNTWQSIIGLIFTFVSVLYSSFR 304 (429)
T ss_pred ccHHHHHHHHHHHHH-HHHHcCCCcccCCc------------ccccCCcchHHHHHHHHHHHHHHHHhccc
Confidence 345555666667777 66666665555544 01123456667788999888887665543
No 133
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=52.65 E-value=10 Score=29.46 Aligned_cols=11 Identities=18% Similarity=0.138 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 021377 265 IGAMIIVAGFY 275 (313)
Q Consensus 265 ~G~~lii~g~~ 275 (313)
+|++++++.++
T Consensus 75 aGvIg~Illi~ 85 (122)
T PF01102_consen 75 AGVIGIILLIS 85 (122)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 134
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=52.39 E-value=4.7 Score=35.89 Aligned_cols=63 Identities=10% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhccCCceeeeechhhH----HHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcc
Q 021377 218 GFRVGLCTWCLSRTGPLYVSMFKPLA----IVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG 280 (313)
Q Consensus 218 ~~~~~l~~~a~~~~~a~~~s~~~~~~----pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~ 280 (313)
+++-.+|.+.+++.+|+.-+++.+.- -++-.++++++-..++|...=+=-.+.++++++..+.
T Consensus 119 aL~vW~Ym~lLr~~GAs~WtiLaFcLAF~LaivlLIIAv~L~qaWfT~L~dL~WL~LFlaiLIWlY~ 185 (381)
T PF05297_consen 119 ALGVWFYMWLLRELGASFWTILAFCLAFLLAIVLLIIAVLLHQAWFTILVDLYWLLLFLAILIWLYV 185 (381)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35556667789999999887765543 3333445554444455543222223445555554443
No 135
>PF03595 SLAC1: Voltage-dependent anion channel; InterPro: IPR004695 Two members of the Tellurite-Resistance/Dicarboxylate Transporter (TDT) family have been functionally characterised. One is the TehA protein of Escherichia coli which has been implicated in resistance to tellurite; the other is the Mae1 protein of Schizosaccharomyces pombe which functions in the uptake of malate and other dicarboxylates by a proton symport mechanism. These proteins exhibit 10 putative transmembrane a-helical spanners (TMSs).; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3M76_A 3M7C_A 3M7E_A 3M74_A 3M7B_A 3M71_A 3M72_A 3M77_A 3M7L_A 3M75_A ....
Probab=52.27 E-value=92 Score=28.26 Aligned_cols=77 Identities=12% Similarity=0.043 Sum_probs=43.6
Q ss_pred chhhHHhhhhhhhhheeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHH-------HHH-HHhhhc
Q 021377 95 KSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFI-------LQA-LILRKF 166 (313)
Q Consensus 95 ~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v-------~~k-~~~~~~ 166 (313)
.+.+..++..|+..+.. .-+. ........|..+..++.+.|....+ ..+ +..++.
T Consensus 6 ~~f~~~mGtg~l~~~~~-~~~~----------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~el 68 (330)
T PF03595_consen 6 AWFGMVMGTGGLSNLLY-LLPY----------------HFGGLAILSEVLFILALILFLVLLVLYLLRWIRYPKAFKAEL 68 (330)
T ss_dssp GGGHHHHHHHHHHHHHH-TTTT----------------TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHH----------------hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 48899999999888741 1110 1223345677777777777766222 222 233344
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 021377 167 AAVLIIMFYLFFFNTILSTAFA 188 (313)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~ 188 (313)
.||....++.+...+...+...
T Consensus 69 ~~p~~~~f~~t~~m~~~~l~~~ 90 (330)
T PF03595_consen 69 RHPVRSSFFPTFPMALMLLAAF 90 (330)
T ss_dssp HSTTGGGGGGHHHHHHHHHHHH
T ss_pred cCCcccchHHHHHHHHHHHHHH
Confidence 4667777666666555554443
No 136
>PRK11010 ampG muropeptide transporter; Validated
Probab=51.99 E-value=2.3e+02 Score=27.38 Aligned_cols=19 Identities=16% Similarity=0.128 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHHHHHhcc
Q 021377 262 GSLIGAMIIVAGFYAVMWG 280 (313)
Q Consensus 262 ~~~~G~~lii~g~~l~~~~ 280 (313)
...+..++.+.|+.+..+.
T Consensus 384 ~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 384 FYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555556666655443
No 137
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=50.13 E-value=54 Score=21.44 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=34.9
Q ss_pred chhhHHhhhhhhhhheeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021377 95 KSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRK 165 (313)
Q Consensus 95 ~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~ 165 (313)
...|..+.+.|++++.. .++ |.+..+++...++.+.-+.|+..+.
T Consensus 5 ~v~G~~lv~~Gii~~~l-PGp-------------------------G~l~i~~GL~iLa~ef~wArr~l~~ 49 (53)
T PF09656_consen 5 GVLGWVLVVAGIIMLPL-PGP-------------------------GLLVIFLGLAILATEFPWARRLLRR 49 (53)
T ss_pred hhHHHHHHHHHHHhhcC-CCC-------------------------cHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 57888899999998853 333 7788888888899888888877654
No 138
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=49.74 E-value=81 Score=30.54 Aligned_cols=24 Identities=4% Similarity=0.253 Sum_probs=19.3
Q ss_pred cchhhHHHHHHHHHHHHHHhcccc
Q 021377 259 FCLGSLIGAMIIVAGFYAVMWGKS 282 (313)
Q Consensus 259 ~~~~~~~G~~lii~g~~l~~~~~~ 282 (313)
++..|++.+.++++|+++..+.++
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~~ 277 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAPK 277 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhc
Confidence 788899999999999887765433
No 139
>PRK10489 enterobactin exporter EntS; Provisional
Probab=49.51 E-value=2.2e+02 Score=26.43 Aligned_cols=18 Identities=17% Similarity=0.205 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHhcc
Q 021377 263 SLIGAMIIVAGFYAVMWG 280 (313)
Q Consensus 263 ~~~G~~lii~g~~l~~~~ 280 (313)
.+.|....++++.+....
T Consensus 382 ~~~~~~~~~~~~~~~~~~ 399 (417)
T PRK10489 382 SASGFGLLIIGVLLLLVL 399 (417)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 345555555566655443
No 140
>PRK11469 hypothetical protein; Provisional
Probab=47.08 E-value=13 Score=31.19 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=28.3
Q ss_pred eechhhHHHHHHHHHHHHhcCccchhhHHHHH-HHHHHHHHHhc
Q 021377 237 SMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAM-IIVAGFYAVMW 279 (313)
Q Consensus 237 s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~-lii~g~~l~~~ 279 (313)
+.+..+.|..+...+-.+-+-.....+|+|.. ++++|..+...
T Consensus 44 g~~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~lG~~mi~e 87 (188)
T PRK11469 44 GAVETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMIIE 87 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446678888888877655545555677654 45578887763
No 141
>PF15102 TMEM154: TMEM154 protein family
Probab=46.64 E-value=17 Score=29.03 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHhccccccc
Q 021377 265 IGAMIIVAGFYAVMWGKSKEE 285 (313)
Q Consensus 265 ~G~~lii~g~~l~~~~~~~~~ 285 (313)
++++|++..++++.+.|||+.
T Consensus 67 LLvlLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 67 LLVLLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHHHHHHheeEEeeccc
Confidence 334444555566555544433
No 142
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=46.48 E-value=21 Score=26.93 Aligned_cols=60 Identities=13% Similarity=0.165 Sum_probs=39.2
Q ss_pred HHHHHHHHH-----hccccChhhHhHhhhh-hHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhh
Q 021377 44 CSSQIFSFV-----GIQYSSPTLSTAMLNL-IPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 109 (313)
Q Consensus 44 ~~~~~~~~~-----al~~~~~~~a~ii~~~-~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll 109 (313)
++.-+++-. |.+.-+.++--+++-. .-..-+.++.+++||++++. ...|.++.+.++..+
T Consensus 41 AffEY~l~VPANRiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n------~l~af~~i~~av~fi 106 (108)
T PF04342_consen 41 AFFEYCLQVPANRIGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWN------YLWAFLCILGAVYFI 106 (108)
T ss_pred HHHHHHHhCcchhhhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHH------HHHHHHHHHHhhhee
Confidence 555555544 4444455555555443 22344567888999999999 898888877776654
No 143
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=46.23 E-value=2.8e+02 Score=26.67 Aligned_cols=125 Identities=13% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHH
Q 021377 141 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFR 220 (313)
Q Consensus 141 G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~ 220 (313)
|.++..+.-+++-+.-++.| +++ +|+......+..+...++.+++ .| +.. ...+.+..+. ++.+-
T Consensus 301 giLFI~LTF~~fflfE~~~~---~~i-HpiQY~LVGlAl~lFYlLLLSl-SE------hi~---F~~AYliAa~-a~i~L 365 (430)
T PF06123_consen 301 GILFIGLTFLAFFLFELLSK---LRI-HPIQYLLVGLALVLFYLLLLSL-SE------HIG---FNLAYLIAAL-ACIGL 365 (430)
T ss_pred HHHHHHHHHHHHHHHHHHhc---Ccc-cHHHHHHHHHHHHHHHHHHHHH-Hh------hhc---hHHHHHHHHH-HHHHH
Q ss_pred HHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcc
Q 021377 221 VGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG 280 (313)
Q Consensus 221 ~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~ 280 (313)
-.+|..++-+-.-.-......+.-+.+.++..+-..+.=-..--+|..++++.++..+++
T Consensus 366 i~~Y~~~vl~~~k~~~~~~~~L~~LY~~Ly~lLq~EdyALL~GSl~LF~iLa~vM~~TRk 425 (430)
T PF06123_consen 366 ISLYLSSVLKSWKRGLIFAGLLAALYGFLYVLLQSEDYALLMGSLLLFIILALVMYLTRK 425 (430)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHheeec
No 144
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=45.29 E-value=2.5e+02 Score=25.92 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=9.6
Q ss_pred hhHHHHHHHHHHHHHHh
Q 021377 262 GSLIGAMIIVAGFYAVM 278 (313)
Q Consensus 262 ~~~~G~~lii~g~~l~~ 278 (313)
...++.++.+.++.+..
T Consensus 371 ~f~~~~~~~~~~~~~~~ 387 (402)
T PRK11902 371 FYLMTVVIALPGLALLW 387 (402)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556666666655553
No 145
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=44.19 E-value=7.5 Score=34.63 Aligned_cols=64 Identities=9% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHHH-HHHHHHHHHh-ccccChhhHhHhhhhhHHHHHHH-HHHHhhhc-ccccccccCcchhhHHhhhhhhh
Q 021377 38 LLSVFG-CSSQIFSFVG-IQYSSPTLSTAMLNLIPAFTFVL-AIIFRLEK-LNWENKSSQAKSLGTFASIGGAF 107 (313)
Q Consensus 38 ~~g~~~-~~~~~~~~~a-l~~~~~~~a~ii~~~~P~~~~l~-a~~~~~E~-~~~~~~~~~~~~~g~~l~~~Gv~ 107 (313)
..|.+- .++..++|+= ++-.+-+..+++.+.+-+.+.++ -.+++|+| +.+. -.+++++.++-.+
T Consensus 26 ~~~~llll~ail~w~~iimsd~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPL------GlLCiilimi~lL 93 (381)
T PF05297_consen 26 LFGLLLLLVAILVWFFIIMSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPL------GLLCIILIMIVLL 93 (381)
T ss_dssp --------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcc------hHHHHHHHHHHHH
Confidence 334333 4444444333 23333333445544433333333 33445555 4555 4555555444333
No 146
>PRK02237 hypothetical protein; Provisional
Probab=42.59 E-value=27 Score=26.47 Aligned_cols=38 Identities=11% Similarity=0.087 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhhee
Q 021377 68 LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF 111 (313)
Q Consensus 68 ~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 111 (313)
..-+.+.+..+..-++|++.. +++|..++++|+.++.+
T Consensus 68 vyI~~Sl~W~w~vdg~~Pd~~------D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 68 VYVAGSLLWLWVVDGVRPDRW------DWIGAAICLVGMAVIMY 105 (109)
T ss_pred HHHHHHHHHHHHhcCcCCChh------HHHhHHHHHHhHHHhee
Confidence 444555577788889999999 99999999999998853
No 147
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=42.18 E-value=16 Score=31.22 Aligned_cols=45 Identities=16% Similarity=0.339 Sum_probs=27.9
Q ss_pred eeeeechhhHHHHHHHHHHHHhcCccc-hhhHHH-HHHHHHHHHHHh
Q 021377 234 LYVSMFKPLAIVFSIVMDVVIVGDAFC-LGSLIG-AMIIVAGFYAVM 278 (313)
Q Consensus 234 ~~~s~~~~~~pv~a~i~~~l~~ge~~~-~~~~~G-~~lii~g~~l~~ 278 (313)
..++.+..+.|..+..++..+-+--.. ..+++| .+++++|..+..
T Consensus 34 l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~ 80 (206)
T TIGR02840 34 LIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIY 80 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 344555556778888888765543333 345655 556668988775
No 148
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=41.10 E-value=16 Score=28.71 Aligned_cols=20 Identities=10% Similarity=0.245 Sum_probs=13.3
Q ss_pred eeeechhhHHHHHHHHHHHH
Q 021377 235 YVSMFKPLAIVFSIVMDVVI 254 (313)
Q Consensus 235 ~~s~~~~~~pv~a~i~~~l~ 254 (313)
+.+.+.|+-|+++++.+.++
T Consensus 69 ~aa~l~Y~lPll~li~g~~l 88 (135)
T PF04246_consen 69 KAAFLVYLLPLLALIAGAVL 88 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555666688888877654
No 149
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=41.06 E-value=25 Score=26.52 Aligned_cols=52 Identities=10% Similarity=0.048 Sum_probs=37.7
Q ss_pred ccccChhhHh-HhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhhee
Q 021377 54 IQYSSPTLST-AMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF 111 (313)
Q Consensus 54 l~~~~~~~a~-ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 111 (313)
+|-.+.+.+= .--...-+.+.+..+.+-++|+++. +++|..++++|+.++.+
T Consensus 51 l~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~------D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 51 LQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRW------DWIGAAICLVGVAIILF 103 (107)
T ss_pred cCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChH------HHHhHHHHHHhHHheEe
Confidence 4444444442 2233455666677788889999999 99999999999999853
No 150
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=40.83 E-value=2.6e+02 Score=26.92 Aligned_cols=44 Identities=9% Similarity=0.116 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHhc-CccchhhHHHHHHHHHHHHHHhccccccc
Q 021377 241 PLAIVFSIVMDVVIVG-DAFCLGSLIGAMIIVAGFYAVMWGKSKEE 285 (313)
Q Consensus 241 ~~~pv~a~i~~~l~~g-e~~~~~~~~G~~lii~g~~l~~~~~~~~~ 285 (313)
.+.|+++.+ +++..+ ..-......|++.+++|+.+..+.|.+++
T Consensus 167 al~~~~~~l-a~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pq 211 (448)
T COG2271 167 ALAPLVALL-AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQ 211 (448)
T ss_pred chHHHHHHH-HHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 345555554 555544 33333456788888899888776555443
No 151
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.81 E-value=30 Score=25.71 Aligned_cols=32 Identities=13% Similarity=0.399 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhh
Q 021377 72 FTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 109 (313)
Q Consensus 72 ~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll 109 (313)
.-..++.+.+||++++. .+.+..+...|+.++
T Consensus 82 iFv~Fsvfyl~epl~~~------~l~a~~~i~gav~fi 113 (116)
T COG3169 82 IFVPFSVFYLKEPLRWN------YLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHHHcCcchHH------HHHHHHHHHHHHHHh
Confidence 33467888999999999 999988888888776
No 152
>PF15471 TMEM171: Transmembrane protein family 171
Probab=38.62 E-value=32 Score=30.46 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=18.4
Q ss_pred hhhHHHHHHHHHHHHHHhccccccc
Q 021377 261 LGSLIGAMIIVAGFYAVMWGKSKEE 285 (313)
Q Consensus 261 ~~~~~G~~lii~g~~l~~~~~~~~~ 285 (313)
..|+.|-++++.|+.+....+-|+|
T Consensus 161 slQImGPlIVl~GLCFFVVAHvKKr 185 (319)
T PF15471_consen 161 SLQIMGPLIVLVGLCFFVVAHVKKR 185 (319)
T ss_pred ehhhhhhHHHHHhhhhhheeeeeec
Confidence 4789999999999887765544433
No 153
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=36.83 E-value=1.2e+02 Score=27.00 Aligned_cols=45 Identities=7% Similarity=0.218 Sum_probs=27.3
Q ss_pred eechhhHHHHHHHHHHHHhcC-----ccchhhHHHHHHHHHHHHHHhccc
Q 021377 237 SMFKPLAIVFSIVMDVVIVGD-----AFCLGSLIGAMIIVAGFYAVMWGK 281 (313)
Q Consensus 237 s~~~~~~pv~a~i~~~l~~ge-----~~~~~~~~G~~lii~g~~l~~~~~ 281 (313)
+.+..+-.+.=.+.+.+--++ .+|..|+++..++++|+.+..+.+
T Consensus 208 ~~yl~~Y~~~Rf~iEf~R~~~~~~~~~ls~~Q~~sl~~i~~g~~~~~~~~ 257 (269)
T PRK12437 208 ALYLIWYSIGRFFIEGLRTDSLMLFGWLRIAQVISIPLIIIGIILIIYRR 257 (269)
T ss_pred HHHHHHHHHHHHhhhhhccCchhhhcChhHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444432222 267899999999999987764433
No 154
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=36.08 E-value=94 Score=23.00 Aligned_cols=17 Identities=12% Similarity=0.579 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHhcc
Q 021377 264 LIGAMIIVAGFYAVMWG 280 (313)
Q Consensus 264 ~~G~~lii~g~~l~~~~ 280 (313)
++|+++++-......|+
T Consensus 50 f~Gi~lMlPAav~ivWR 66 (96)
T PF07214_consen 50 FVGIGLMLPAAVNIVWR 66 (96)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666666444444444
No 155
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=34.55 E-value=52 Score=22.55 Aligned_cols=22 Identities=18% Similarity=-0.005 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHHhccccc
Q 021377 262 GSLIGAMIIVAGFYAVMWGKSK 283 (313)
Q Consensus 262 ~~~~G~~lii~g~~l~~~~~~~ 283 (313)
..+++++.+++|++++...+++
T Consensus 5 ~iLi~ICVaii~lIlY~iYnr~ 26 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYNRK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3467778888888877654433
No 156
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=34.13 E-value=38 Score=21.08 Aligned_cols=15 Identities=20% Similarity=0.284 Sum_probs=6.3
Q ss_pred chhhHHHHHHHHHHH
Q 021377 260 CLGSLIGAMIIVAGF 274 (313)
Q Consensus 260 ~~~~~~G~~lii~g~ 274 (313)
+|.+.+=.++|++|+
T Consensus 3 ~wlt~iFsvvIil~I 17 (49)
T PF11044_consen 3 TWLTTIFSVVIILGI 17 (49)
T ss_pred hHHHHHHHHHHHHHH
Confidence 444444334444443
No 157
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=34.08 E-value=3.7e+02 Score=24.58 Aligned_cols=34 Identities=12% Similarity=-0.035 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhc
Q 021377 246 FSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMW 279 (313)
Q Consensus 246 ~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~ 279 (313)
...+.+++.-.-..+...++++++.++++.+...
T Consensus 354 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (399)
T PRK05122 354 TGPLAGLVASWFGYPSIFLAAALAALLGLALTWL 387 (399)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3344454432222333444455555555554443
No 158
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=33.86 E-value=64 Score=28.60 Aligned_cols=14 Identities=14% Similarity=0.171 Sum_probs=6.5
Q ss_pred HHHHHHhccccccc
Q 021377 272 AGFYAVMWGKSKEE 285 (313)
Q Consensus 272 ~g~~l~~~~~~~~~ 285 (313)
+|+.+..+.++|++
T Consensus 228 isI~i~~~~~~~~~ 241 (258)
T PRK10921 228 IGVFFSRFYVGKGR 241 (258)
T ss_pred HHHHHHHHHhhccc
Confidence 45555544443333
No 159
>PF15345 TMEM51: Transmembrane protein 51
Probab=33.61 E-value=36 Score=29.47 Aligned_cols=22 Identities=9% Similarity=0.276 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhcccccccc
Q 021377 265 IGAMIIVAGFYAVMWGKSKEEK 286 (313)
Q Consensus 265 ~G~~lii~g~~l~~~~~~~~~~ 286 (313)
.|+++.++.+.+..+.|+|++.
T Consensus 67 ~Gv~LLLLSICL~IR~KRr~rq 88 (233)
T PF15345_consen 67 SGVALLLLSICLSIRDKRRRRQ 88 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4667777777777766665443
No 160
>COG1971 Predicted membrane protein [Function unknown]
Probab=33.48 E-value=46 Score=27.99 Aligned_cols=42 Identities=12% Similarity=0.245 Sum_probs=28.2
Q ss_pred echhhHHHHHHHHHHHHhcCccchhhHHH-HHHHHHHHHHHhc
Q 021377 238 MFKPLAIVFSIVMDVVIVGDAFCLGSLIG-AMIIVAGFYAVMW 279 (313)
Q Consensus 238 ~~~~~~pv~a~i~~~l~~ge~~~~~~~~G-~~lii~g~~l~~~ 279 (313)
.+....|+++...+.++-+-.-.+..|+| .++++.|+.+...
T Consensus 45 ~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~e 87 (190)
T COG1971 45 VFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMIIE 87 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455688888888776655555667665 5556689888754
No 161
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=33.36 E-value=22 Score=28.83 Aligned_cols=17 Identities=0% Similarity=0.202 Sum_probs=9.1
Q ss_pred eechhhHHHHHHHHHHH
Q 021377 237 SMFKPLAIVFSIVMDVV 253 (313)
Q Consensus 237 s~~~~~~pv~a~i~~~l 253 (313)
+.+.|+-|+++++.+.+
T Consensus 78 a~lvYllPLl~li~ga~ 94 (154)
T PRK10862 78 ALLVYMTPLVGLFLGAA 94 (154)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444556666666544
No 162
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=33.22 E-value=2.9e+02 Score=23.29 Aligned_cols=23 Identities=9% Similarity=0.030 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 021377 140 LGGFFLAAEAFMNSAWFILQALI 162 (313)
Q Consensus 140 ~G~~~~l~s~~~~a~~~v~~k~~ 162 (313)
.+....++|+++++++..+.||.
T Consensus 179 ~~~~~iiig~i~~~~~~~lkkk~ 201 (206)
T PF06570_consen 179 PPWVYIIIGVIAFALRFYLKKKY 201 (206)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778888899999888877764
No 163
>PRK11715 inner membrane protein; Provisional
Probab=32.64 E-value=4.6e+02 Score=25.25 Aligned_cols=125 Identities=12% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHH
Q 021377 141 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFR 220 (313)
Q Consensus 141 G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~ 220 (313)
|.++..+.-+++-+.-+++| .+. +|+......+..+...++.+++ .| +.. ...+.+..+. ++.+-
T Consensus 307 giLFI~LTF~~fFlfE~~~~---~~i-HpiQYlLVGlAl~lFYLLLLSl-SE------Hig---F~~AYliAa~-a~v~l 371 (436)
T PRK11715 307 AILFIALTFAAFFLFELLKK---LRI-HPVQYLLVGLALVLFYLLLLSL-SE------HIG---FTLAYLIAAL-ACVLL 371 (436)
T ss_pred HHHHHHHHHHHHHHHHHhcC---cee-cHHHHHHHHHHHHHHHHHHHHH-Hh------hhc---hHHHHHHHHH-HHHHH
Q ss_pred HHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcc
Q 021377 221 VGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG 280 (313)
Q Consensus 221 ~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~ 280 (313)
-.+|..++-+-.-.-......+.-+.+.+++.+-..+.=-..-=++..+++..++..+++
T Consensus 372 i~~Y~~~vl~~~k~g~~~~~~L~~LYg~Ly~lLq~EDyALL~GSllLF~~La~vM~~TR~ 431 (436)
T PRK11715 372 IGFYLSAVLRSWKRGLLFAAALAALYGVLYGLLQSEDYALLLGSLLLFAVLALVMFLTRR 431 (436)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHheeec
No 164
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=32.28 E-value=1.1e+02 Score=25.99 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccChh
Q 021377 32 ILCSFFLLSVFGCSSQIFSFVGIQYSSPT 60 (313)
Q Consensus 32 ~~~~~~~~g~~~~~~~~~~~~al~~~~~~ 60 (313)
.+++.++.++...+.....+...+..++.
T Consensus 145 ~~~k~~~~~~~~~~~w~~~~~~~~~lp~~ 173 (206)
T PF06570_consen 145 SWWKYILISVLAMVLWIVIFVLTSFLPPV 173 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 34444444444433334444444445444
No 165
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=31.88 E-value=2.1e+02 Score=21.08 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=28.2
Q ss_pred HHHhccCCceeeeechhhHHHHHHHHHHHH---hcCc-cchhhHHHHHHHHHHHHHHhcc
Q 021377 225 TWCLSRTGPLYVSMFKPLAIVFSIVMDVVI---VGDA-FCLGSLIGAMIIVAGFYAVMWG 280 (313)
Q Consensus 225 ~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~---~ge~-~~~~~~~G~~lii~g~~l~~~~ 280 (313)
..++++++...--.+-.+.-+++++++.+. .++. +-...|.|+..=+.+..+..-.
T Consensus 22 Vq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~ 81 (93)
T PF06946_consen 22 VQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQF 81 (93)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHH
Confidence 566677654444444444455555554432 2222 3334567776555555554433
No 166
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=31.07 E-value=64 Score=20.83 Aligned_cols=13 Identities=15% Similarity=0.008 Sum_probs=7.0
Q ss_pred HHHHHHHhccccc
Q 021377 271 VAGFYAVMWGKSK 283 (313)
Q Consensus 271 i~g~~l~~~~~~~ 283 (313)
++|+.+...-|++
T Consensus 15 lLg~~I~~~~K~y 27 (50)
T PF12606_consen 15 LLGLSICTTLKAY 27 (50)
T ss_pred HHHHHHHHHhhcc
Confidence 4566665554444
No 167
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=30.96 E-value=2.4e+02 Score=23.18 Aligned_cols=83 Identities=14% Similarity=0.123 Sum_probs=48.5
Q ss_pred HHHHHhhhcccccccccCcchhhHHh-------hhhhhhhheeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHH
Q 021377 76 LAIIFRLEKLNWENKSSQAKSLGTFA-------SIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAE 148 (313)
Q Consensus 76 ~a~~~~~E~~~~~~~~~~~~~~g~~l-------~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s 148 (313)
.-..+.|..++.. +..|+.+ ++.|+.++-. ..+.++.......+.+
T Consensus 88 ~Em~v~KtsP~LY------r~LGIfLPLITTNCaVLgvaLln~---------------------~~~~~f~qsv~~gf~a 140 (193)
T COG4657 88 TEMVVRKTSPTLY------RLLGIFLPLITTNCAVLGVALLNI---------------------NEGHNFLQSVVYGFGA 140 (193)
T ss_pred HHHHHHccCHHHH------HHHHHhhhhHhhchHHHHHHHHHh---------------------hhhhhHHHHHHHHhhh
Confidence 3344556667777 8888876 5667777732 1223455667778888
Q ss_pred HHHHHHHHHHHHHHhh-----hchhHHHHHHHHHHHHHHHHH
Q 021377 149 AFMNSAWFILQALILR-----KFAAVLIIMFYLFFFNTILST 185 (313)
Q Consensus 149 ~~~~a~~~v~~k~~~~-----~~~~~~~~~~~~~~~~~~~~~ 185 (313)
++.+++..++..-..+ +.|.|..-..+.++.+++..+
T Consensus 141 ~lGfslvmvlfA~iRER~~~advP~~frG~~ialitagLmSl 182 (193)
T COG4657 141 ALGFSLVMVLFAAIRERLALADVPAPFRGAAIALITAGLMSL 182 (193)
T ss_pred HhhHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHH
Confidence 8888877776543332 334444444455554444433
No 168
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=30.64 E-value=41 Score=20.62 Aligned_cols=19 Identities=37% Similarity=0.847 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhccccc
Q 021377 265 IGAMIIVAGFYAVMWGKSK 283 (313)
Q Consensus 265 ~G~~lii~g~~l~~~~~~~ 283 (313)
+|.++++++++++.|++++
T Consensus 21 V~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 21 VGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred hHHHHHHHHHHhheEEecc
Confidence 3555566666666555443
No 169
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=29.75 E-value=26 Score=27.23 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021377 207 VAVLYSAVIGTGFRVGL 223 (313)
Q Consensus 207 ~~ll~~g~~~s~~~~~l 223 (313)
..++..|++.|.++|.+
T Consensus 57 ~vili~GvvvT~vays~ 73 (129)
T PF15099_consen 57 VVILIAGVVVTAVAYSF 73 (129)
T ss_pred HHHHHHhhHhheeeEee
Confidence 34566777777777665
No 170
>PHA03049 IMV membrane protein; Provisional
Probab=29.71 E-value=68 Score=21.91 Aligned_cols=22 Identities=14% Similarity=0.075 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHhccccc
Q 021377 262 GSLIGAMIIVAGFYAVMWGKSK 283 (313)
Q Consensus 262 ~~~~G~~lii~g~~l~~~~~~~ 283 (313)
..+++++.+++|++++-..+++
T Consensus 5 ~~l~iICVaIi~lIvYgiYnkk 26 (68)
T PHA03049 5 IILVIICVVIIGLIVYGIYNKK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3456777777887776654443
No 171
>MTH00057 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=28.38 E-value=3.5e+02 Score=22.57 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=23.1
Q ss_pred HHHHHHHhcCccchhhHHHHHHHH--HHHHHHhc
Q 021377 248 IVMDVVIVGDAFCLGSLIGAMIIV--AGFYAVMW 279 (313)
Q Consensus 248 ~i~~~l~~ge~~~~~~~~G~~lii--~g~~l~~~ 279 (313)
-.+|..++.|..-+....|..+.+ +|.....+
T Consensus 132 ~~iG~~Lyt~Y~l~fe~~s~lLLvAmIGAIvLa~ 165 (186)
T MTH00057 132 EVLGRVLYTDYYYLFILASFILLVAMIGAIVLTH 165 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445788888988888999988876 45444443
No 172
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=27.45 E-value=5.9e+02 Score=24.83 Aligned_cols=16 Identities=6% Similarity=0.048 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHHH
Q 021377 168 AVLIIMFYLFFFNTIL 183 (313)
Q Consensus 168 ~~~~~~~~~~~~~~~~ 183 (313)
.|......+..++.++
T Consensus 330 ~P~~a~~~~~~i~~l~ 345 (507)
T TIGR00910 330 VPVPLVIIQGIITSIA 345 (507)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 3555555555555443
No 173
>PF12292 DUF3624: Protein of unknown function (DUF3624); InterPro: IPR022072 This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length. There is a conserved GRC sequence motif.
Probab=27.36 E-value=1.8e+02 Score=20.58 Aligned_cols=17 Identities=6% Similarity=0.278 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021377 144 FLAAEAFMNSAWFILQA 160 (313)
Q Consensus 144 ~~l~s~~~~a~~~v~~k 160 (313)
+.+++.++|.++....+
T Consensus 25 LtvLs~~~w~iWw~~f~ 41 (77)
T PF12292_consen 25 LTVLSVLSWPIWWFFFR 41 (77)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 45555555555555544
No 174
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=27.10 E-value=1e+02 Score=17.48 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=7.1
Q ss_pred chhhHHHHHHHHHH
Q 021377 260 CLGSLIGAMIIVAG 273 (313)
Q Consensus 260 ~~~~~~G~~lii~g 273 (313)
....++|.+++..+
T Consensus 11 ~~~~~~G~~l~~~~ 24 (34)
T TIGR01167 11 SLLLLLGLLLLGLG 24 (34)
T ss_pred HHHHHHHHHHHHHH
Confidence 34556666444443
No 175
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=25.21 E-value=92 Score=21.72 Aligned_cols=9 Identities=33% Similarity=0.563 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 021377 264 LIGAMIIVA 272 (313)
Q Consensus 264 ~~G~~lii~ 272 (313)
++|+.+++.
T Consensus 9 i~Gm~iVF~ 17 (79)
T PF04277_consen 9 IIGMGIVFL 17 (79)
T ss_pred HHHHHHHHH
Confidence 344444443
No 176
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.08 E-value=2e+02 Score=21.88 Aligned_cols=27 Identities=11% Similarity=0.022 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhcC-ccchhhHHHHHHH
Q 021377 244 IVFSIVMDVVIVGD-AFCLGSLIGAMII 270 (313)
Q Consensus 244 pv~a~i~~~l~~ge-~~~~~~~~G~~li 270 (313)
.++++.++|++-+- --+|+-++...++
T Consensus 56 ilVGa~iG~llD~~agTsPwglIv~lll 83 (116)
T COG5336 56 ILVGAGIGWLLDKFAGTSPWGLIVFLLL 83 (116)
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 34556666654221 1233444444444
No 177
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=25.02 E-value=89 Score=25.31 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=19.3
Q ss_pred ccccChhhHhHhhhhhHHHHHHHHHHHh
Q 021377 54 IQYSSPTLSTAMLNLIPAFTFVLAIIFR 81 (313)
Q Consensus 54 l~~~~~~~a~ii~~~~P~~~~l~a~~~~ 81 (313)
+..-+...++.+.|+.|++..+.+..+.
T Consensus 69 i~e~~llkaa~lvYllPLl~li~ga~l~ 96 (154)
T PRK10862 69 IAEGSLLRSALLVYMTPLVGLFLGAALF 96 (154)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455677888899988888775554
No 178
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=24.74 E-value=1.2e+02 Score=24.40 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=21.8
Q ss_pred hccccChhhHhHhhhhhHHHHHHHHHHHh
Q 021377 53 GIQYSSPTLSTAMLNLIPAFTFVLAIIFR 81 (313)
Q Consensus 53 al~~~~~~~a~ii~~~~P~~~~l~a~~~~ 81 (313)
++.--+.-.++.+.|+.|+++.+++.++.
T Consensus 68 Gi~EkslL~sA~LvYi~PL~~l~v~~~La 96 (150)
T COG3086 68 GIEEKSLLKSALLVYIFPLVGLFLGAILA 96 (150)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566788999999999998887663
No 179
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=24.33 E-value=3.2e+02 Score=21.79 Aligned_cols=29 Identities=10% Similarity=-0.057 Sum_probs=24.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021377 136 LSWILGGFFLAAEAFMNSAWFILQALILR 164 (313)
Q Consensus 136 ~~~~~G~~~~l~s~~~~a~~~v~~k~~~~ 164 (313)
.......+..+++++.|.-|...+||..+
T Consensus 117 ~~~i~~l~~~li~a~IwipYf~~S~RVK~ 145 (149)
T PF10754_consen 117 AEAIRELLRSLIAAAIWIPYFLRSKRVKN 145 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Confidence 33456889999999999999999998754
No 180
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=23.86 E-value=5.4e+02 Score=24.65 Aligned_cols=23 Identities=9% Similarity=0.183 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 021377 144 FLAAEAFMNSAWFILQALILRKF 166 (313)
Q Consensus 144 ~~l~s~~~~a~~~v~~k~~~~~~ 166 (313)
+.+.+.+.-.+..+..-+..+++
T Consensus 50 ~~~~~~v~~l~~~~~~~~~~~~i 72 (437)
T TIGR00939 50 YTLASQLPSLLFNSLNLFLIFRI 72 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 33344444444444443444444
No 181
>PF14851 FAM176: FAM176 family
Probab=23.50 E-value=1.2e+02 Score=24.53 Aligned_cols=10 Identities=30% Similarity=0.448 Sum_probs=4.1
Q ss_pred CccchhhHHH
Q 021377 257 DAFCLGSLIG 266 (313)
Q Consensus 257 e~~~~~~~~G 266 (313)
|++.+..+.|
T Consensus 20 E~~aLYFv~g 29 (153)
T PF14851_consen 20 ERFALYFVSG 29 (153)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 182
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=23.35 E-value=5.2e+02 Score=24.29 Aligned_cols=7 Identities=0% Similarity=-0.486 Sum_probs=2.6
Q ss_pred HHhccCC
Q 021377 226 WCLSRTG 232 (313)
Q Consensus 226 ~a~~~~~ 232 (313)
...+..+
T Consensus 388 ~~~e~~p 394 (479)
T PRK10077 388 LLSEIFP 394 (479)
T ss_pred HhHhhCC
Confidence 3333333
No 183
>PF11295 DUF3096: Protein of unknown function (DUF3096); InterPro: IPR021446 This entry is represented by the archaeal Thermoproteus tenax spherical virus 1, Orf18. The characteristics of the protein distribution suggest prophage matches and lateral genetic transfer in addition to the phage matches.
Probab=22.98 E-value=94 Score=18.87 Aligned_cols=33 Identities=15% Similarity=0.346 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhcCccchhhHHHHHHHHHHHHH
Q 021377 244 IVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYA 276 (313)
Q Consensus 244 pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l 276 (313)
|+.+.+.|++++=-+=-...++|.-+++.|+.-
T Consensus 1 pi~aliaGiLiLi~PrllnyiVaiyLI~~G~lg 33 (39)
T PF11295_consen 1 PILALIAGILILIMPRLLNYIVAIYLIVIGLLG 33 (39)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777665544444567788888888764
No 184
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=22.84 E-value=2.2e+02 Score=20.73 Aligned_cols=56 Identities=16% Similarity=0.098 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcc
Q 021377 205 GLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG 280 (313)
Q Consensus 205 ~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~ 280 (313)
.|+..+.+|++..++.+...+|..... .....+-=.+-..+|..++++|..+.++.
T Consensus 31 ~W~~p~m~~lmllGL~WiVvyYi~~~~--------------------i~pi~~lG~WN~~IGfg~~~~Gf~mt~rW 86 (87)
T PF06781_consen 31 RWYAPLMLGLMLLGLLWIVVYYISGGQ--------------------IPPIPDLGNWNLAIGFGLMIVGFLMTMRW 86 (87)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhcccCC--------------------CCCcccccchHHHHHHHHHHHHHHHHccc
Confidence 677778888888888877776655544 00011111456778999999999887654
No 185
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=22.55 E-value=1.7e+02 Score=26.13 Aligned_cols=18 Identities=11% Similarity=0.014 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHhhhccc
Q 021377 69 IPAFTFVLAIIFRLEKLN 86 (313)
Q Consensus 69 ~P~~~~l~a~~~~~E~~~ 86 (313)
-|+++..+.-+++++-.+
T Consensus 31 rPiv~g~lvGLIlGD~~t 48 (265)
T TIGR00822 31 RPLIACTLVGLILGDLKT 48 (265)
T ss_pred CcHHHHHHHHHHhCCHHH
Confidence 577777777777666554
No 186
>TIGR00544 lgt prolipoprotein diacylglyceryl transferase. The conversion of lipoprotein precursors into lipoproteins consists of three steps. First, the enzyme described by this model transfers a diacylglyceryl moiety from phosphatidylglycerol to the side chain of a Cys that will become the new N-terminus. Second, the signal peptide is removed by signal peptidase II. Finally, the free amino group of the new N-terminal Cys is acylated by apolipoprotein N-acyltransferase.
Probab=22.41 E-value=2.7e+02 Score=24.88 Aligned_cols=23 Identities=9% Similarity=0.342 Sum_probs=18.7
Q ss_pred cchhhHHHHHHHHHHHHHHhccc
Q 021377 259 FCLGSLIGAMIIVAGFYAVMWGK 281 (313)
Q Consensus 259 ~~~~~~~G~~lii~g~~l~~~~~ 281 (313)
++..|++...+++.|+.+..+.+
T Consensus 246 lt~~Q~~sl~~i~~g~~~~~~~~ 268 (278)
T TIGR00544 246 ISMGQILSLLMIAGILIIMLLAY 268 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999988765443
No 187
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=22.23 E-value=6.9e+02 Score=23.79 Aligned_cols=71 Identities=13% Similarity=0.210 Sum_probs=44.5
Q ss_pred HHHHHHHHH-HHHHHHHHHhccccC------------------------------hhhHhHh-hhhhHHHHH-HHHHH-H
Q 021377 35 SFFLLSVFG-CSSQIFSFVGIQYSS------------------------------PTLSTAM-LNLIPAFTF-VLAII-F 80 (313)
Q Consensus 35 ~~~~~g~~~-~~~~~~~~~al~~~~------------------------------~~~a~ii-~~~~P~~~~-l~a~~-~ 80 (313)
.+.+.|+++ ..+.+..-.|....+ .+.++++ ....|-+.. +++.+ +
T Consensus 4 ~fw~~Gl~Nn~~yvv~lsaA~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~c~~~~t~~Vlladi~P~l~~Kl~aP~fi 83 (402)
T PF02487_consen 4 AFWLLGLCNNFLYVVMLSAAHDIVGEQKASPNSSHVDPDPPSTTLPSSSRRDCKSVSTGAVLLADILPSLLVKLIAPFFI 83 (402)
T ss_pred HHHHHHHhcchhHhhhHHhHHHHhhccccCCCCCCCCCCCCCCcCCCccCCCCCcccchHHHHHHHHHHHHHHHHhHhhh
Confidence 345678888 777777777666555 2222233 446675554 44433 3
Q ss_pred hhhcccccccccCcchhhHHhhhhhhhhhee
Q 021377 81 RLEKLNWENKSSQAKSLGTFASIGGAFVVTF 111 (313)
Q Consensus 81 ~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 111 (313)
.+-+.+.+ .+...+++..|.+++.+
T Consensus 84 ~~v~y~~R------i~~~~~l~~~g~l~va~ 108 (402)
T PF02487_consen 84 HRVPYWIR------ILICVALSAAGMLLVAF 108 (402)
T ss_pred hhccchHH------HHHHHHHHHHHHhheee
Confidence 34455666 78888889999998864
No 188
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=22.20 E-value=1.2e+02 Score=21.45 Aligned_cols=15 Identities=20% Similarity=0.339 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHH
Q 021377 263 SLIGAMIIVAGFYAV 277 (313)
Q Consensus 263 ~~~G~~lii~g~~l~ 277 (313)
...|.++...|+...
T Consensus 43 fl~G~~lf~~G~~Fi 57 (77)
T PF11118_consen 43 FLAGLLLFAIGVGFI 57 (77)
T ss_pred HHHHHHHHHHHHHHH
Confidence 446777777777654
No 189
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=21.99 E-value=77 Score=23.85 Aligned_cols=38 Identities=13% Similarity=0.155 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhhee
Q 021377 68 LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF 111 (313)
Q Consensus 68 ~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 111 (313)
..-+...+..+..-+.++++. +++|..++++|+.++.+
T Consensus 67 vyI~~sL~W~~~Vdg~~pdr~------D~~Ga~icl~G~~vil~ 104 (109)
T COG1742 67 VYIAASLAWLWVVDGVRPDRY------DWIGAAICLAGVAVILF 104 (109)
T ss_pred hHHHHHHHHHHHHcCcCCcHH------HhhhHHHHHhceeeeEe
Confidence 333445555666778888989 99999999999988864
No 190
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=21.95 E-value=7.1e+02 Score=23.84 Aligned_cols=45 Identities=11% Similarity=0.084 Sum_probs=25.5
Q ss_pred echhhHHHHHHHHHHHH-hcCccchhhHHHHHHHHHHHHHHhccccc
Q 021377 238 MFKPLAIVFSIVMDVVI-VGDAFCLGSLIGAMIIVAGFYAVMWGKSK 283 (313)
Q Consensus 238 ~~~~~~pv~a~i~~~l~-~ge~~~~~~~~G~~lii~g~~l~~~~~~~ 283 (313)
......|+++.++..+. .... ......|.+++.+|+.++.+.+++
T Consensus 393 ~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~y~~~~~~ 438 (473)
T TIGR00905 393 RKALIVGVIACVYSIWLLYAAG-LKYLLLGFILYAPGIIFYGRARKE 438 (473)
T ss_pred chHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445566665554433 3332 234556888888998776654443
No 191
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=21.34 E-value=4.9e+02 Score=21.72 Aligned_cols=40 Identities=5% Similarity=-0.027 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHH
Q 021377 212 SAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMD 251 (313)
Q Consensus 212 ~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~ 251 (313)
...++.............+......+......++...+..
T Consensus 99 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 138 (251)
T PF13440_consen 99 LAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLL 138 (251)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444455555556667777777777653333
No 192
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=21.15 E-value=37 Score=23.24 Aligned_cols=31 Identities=16% Similarity=0.137 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHhccccChh
Q 021377 30 FSILCSFFLLSVFG--CSSQIFSFVGIQYSSPT 60 (313)
Q Consensus 30 ~~~~~~~~~~g~~~--~~~~~~~~~al~~~~~~ 60 (313)
.+.|.++.+-+++| .+++.++..|+.|+++-
T Consensus 25 ~~~WyWIgvgaL~G~~vlFNil~~laL~yL~p~ 57 (65)
T PF08370_consen 25 ESYWYWIGVGALLGFIVLFNILFTLALTYLNPL 57 (65)
T ss_pred CCcEEeehHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 34577777778888 89999999999999754
No 193
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=21.03 E-value=5.7e+02 Score=22.44 Aligned_cols=120 Identities=13% Similarity=0.094 Sum_probs=55.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchh-HHHHHHHHHH
Q 021377 136 LSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDI-GLVAVLYSAV 214 (313)
Q Consensus 136 ~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ll~~g~ 214 (313)
.-+..|..+.+++++...++.. .|.+.++ +.. +..+.|+.......+-.. ..+....... ....+.|..+
T Consensus 36 FyY~sg~~lGv~~s~li~~~~~-~k~lPrk--~~~----~~~l~gg~~~~~y~l~~~--~~nl~~il~~~~~~v~~yv~~ 106 (249)
T PF10225_consen 36 FYYSSGISLGVLASLLILLFQL-SKLLPRK--SMF----YAVLYGGWSFGLYFLQQL--WENLQSILEEYRIYVLGYVLV 106 (249)
T ss_pred HHHhhhHHHHHHHHHHHHHHHH-HHHccCc--chh----HHHHhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 4456688888887777777655 4444433 232 333444331111111000 0111111111 1223333433
Q ss_pred HHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHH
Q 021377 215 IGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAM 268 (313)
Q Consensus 215 ~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~ 268 (313)
.+ .+. ...+.++.++.....-..++=..=++-..+++.-.-+...-.+++
T Consensus 107 ~G-~vs---f~vcy~~gp~~~~rs~~~v~W~Lqligl~lI~~ss~~~~~a~~~i 156 (249)
T PF10225_consen 107 VG-LVS---FAVCYRYGPPVDPRSRNFVKWALQLIGLVLIYFSSQDPEFAFAAI 156 (249)
T ss_pred HH-HHH---HHhhcccCCCccHhHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 22 233 333345777777776666666665665666665555544444444
No 194
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=20.43 E-value=4.6e+02 Score=21.05 Aligned_cols=54 Identities=13% Similarity=0.114 Sum_probs=34.6
Q ss_pred HHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcc
Q 021377 223 LCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG 280 (313)
Q Consensus 223 l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~ 280 (313)
...+.+++.+..+.++-.. .-..-+++.+--..++.++.|..++..=+.++..-
T Consensus 64 ~~~~lm~~kgi~rm~lG~~----vm~~~~~llw~ggv~~~~IAg~~lv~filmvVLiP 117 (144)
T PF01350_consen 64 VFWFLMRRKGIGRMSLGML----VMAVAGYLLWMGGVPPGQIAGVLLVFFILMVVLIP 117 (144)
T ss_pred HHHhhhcCCCcchhhHHHH----HHHHHHHHHHhcCCcHHHhHHHHHHHHHHHHhccc
Confidence 3445567777777765433 23334455555667889999999887766666543
No 195
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=20.05 E-value=6.7 Score=34.60 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=52.2
Q ss_pred HHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcc
Q 021377 220 RVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG 280 (313)
Q Consensus 220 ~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~ 280 (313)
+-.+..+|.|+++.+.+.++.....+..++++|++++-+-.+.++.|.++-+.|+.++...
T Consensus 91 aNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~s 151 (336)
T KOG2766|consen 91 ANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFS 151 (336)
T ss_pred ccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEe
Confidence 3344557888999999999999999999999999999999999999999888998876543
Done!