Query 021377
Match_columns 313
No_of_seqs 149 out of 1492
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 03:15:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021377.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021377hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.2 2.9E-11 9.9E-16 95.3 8.1 71 211-281 34-105 (137)
2 3b5d_A Multidrug transporter E 98.8 6E-08 2.1E-12 73.5 10.5 70 211-280 34-104 (110)
3 2i68_A Protein EMRE; transmemb 98.3 7.2E-07 2.5E-11 70.0 5.9 68 38-111 34-103 (137)
4 3b5d_A Multidrug transporter E 98.3 1.9E-06 6.6E-11 65.1 6.7 67 38-110 34-102 (110)
5 3rko_J NADH-quinone oxidoreduc 51.5 92 0.0031 24.9 14.2 33 248-280 127-161 (184)
6 3l1l_A Arginine/agmatine antip 49.7 39 0.0013 30.5 7.2 46 239-284 386-431 (445)
7 4aps_A DI-OR tripeptide H+ sym 45.2 1.3E+02 0.0045 26.9 10.2 14 265-278 457-470 (491)
8 1pw4_A Glycerol-3-phosphate tr 42.9 1.7E+02 0.0059 25.6 12.4 11 224-234 368-378 (451)
9 4aps_A DI-OR tripeptide H+ sym 40.7 2E+02 0.0068 25.7 14.3 16 150-165 65-80 (491)
10 3o7q_A L-fucose-proton symport 30.6 2.7E+02 0.0091 24.2 12.3 12 244-255 166-177 (438)
11 2zxe_G FXYD10, phospholemman-l 24.1 52 0.0018 22.0 2.5 20 264-283 25-44 (74)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.21 E-value=2.9e-11 Score=95.29 Aligned_cols=71 Identities=18% Similarity=0.158 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCCceeeeec-hhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhccc
Q 021377 211 YSAVIGTGFRVGLCTWCLSRTGPLYVSMF-KPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGK 281 (313)
Q Consensus 211 ~~g~~~s~~~~~l~~~a~~~~~a~~~s~~-~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~~ 281 (313)
.+++++++++|.+|++++++.+++++..+ ..+.|+++++++++++||++++.+++|+++|++|+++....+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 46677899999999999999999999999 899999999999999999999999999999999999987654
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.77 E-value=6e-08 Score=73.52 Aligned_cols=70 Identities=19% Similarity=0.160 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCCceeeeec-hhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcc
Q 021377 211 YSAVIGTGFRVGLCTWCLSRTGPLYVSMF-KPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG 280 (313)
Q Consensus 211 ~~g~~~s~~~~~l~~~a~~~~~a~~~s~~-~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~ 280 (313)
..++++.+++|.++.+++|+.+.+++..+ ..+.|+++++++++++||++++.+++|..+|+.|+++....
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 45666888999999999999999999888 89999999999999999999999999999999999988654
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.32 E-value=7.2e-07 Score=70.04 Aligned_cols=68 Identities=13% Similarity=0.219 Sum_probs=52.4
Q ss_pred HHHHHH-HHHHHHHHHhccccChhhHhHh-hhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhhee
Q 021377 38 LLSVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF 111 (313)
Q Consensus 38 ~~g~~~-~~~~~~~~~al~~~~~~~a~ii-~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 111 (313)
+.+++. .++++++..++++.+++.+..+ .++.|+++.++++++++|++++. +++|+++.+.|++++..
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 566666 9999999999999999999888 89999999999999999999999 99999999999999854
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.25 E-value=1.9e-06 Score=65.15 Aligned_cols=67 Identities=13% Similarity=0.213 Sum_probs=62.1
Q ss_pred HHHHHH-HHHHHHHHHhccccChhhHhHh-hhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhhe
Q 021377 38 LLSVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 110 (313)
Q Consensus 38 ~~g~~~-~~~~~~~~~al~~~~~~~a~ii-~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 110 (313)
+.+.+. .++++++..++++.|.+.+-.+ ..+.|+++.++++++++|++++. +++|+.+.+.|++++.
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~ 102 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIIN 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 456666 8999999999999999999888 79999999999999999999999 9999999999999985
No 5
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=51.49 E-value=92 Score=24.93 Aligned_cols=33 Identities=9% Similarity=0.117 Sum_probs=24.9
Q ss_pred HHHHHHHhcCccchhhHHHHHHHH--HHHHHHhcc
Q 021377 248 IVMDVVIVGDAFCLGSLIGAMIIV--AGFYAVMWG 280 (313)
Q Consensus 248 ~i~~~l~~ge~~~~~~~~G~~lii--~g~~l~~~~ 280 (313)
--+|..++++.+-+.++.+.++.+ +|.+...++
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLarr 161 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLAGLVVAFHVGRE 161 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467888999999999999988875 455554443
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=49.65 E-value=39 Score=30.47 Aligned_cols=46 Identities=2% Similarity=-0.163 Sum_probs=24.7
Q ss_pred chhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcccccc
Q 021377 239 FKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKE 284 (313)
Q Consensus 239 ~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~~~~~ 284 (313)
.....++++.++..+..-..-....+.|..+++.|+.++.+.++++
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~ 431 (445)
T 3l1l_A 386 AYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRL 431 (445)
T ss_dssp TTHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3344555555554443222222234567778888887776554443
No 7
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=45.18 E-value=1.3e+02 Score=26.89 Aligned_cols=14 Identities=29% Similarity=0.399 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHh
Q 021377 265 IGAMIIVAGFYAVM 278 (313)
Q Consensus 265 ~G~~lii~g~~l~~ 278 (313)
.+.+.++.++....
T Consensus 457 ~~~~~~~~~~~~~~ 470 (491)
T 4aps_A 457 FGLGSVVLGIVLVF 470 (491)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=42.87 E-value=1.7e+02 Score=25.58 Aligned_cols=11 Identities=9% Similarity=-0.157 Sum_probs=5.6
Q ss_pred HHHHhccCCce
Q 021377 224 CTWCLSRTGPL 234 (313)
Q Consensus 224 ~~~a~~~~~a~ 234 (313)
+....+..+..
T Consensus 368 ~~~~~~~~~~~ 378 (451)
T 1pw4_A 368 GLHALELAPKK 378 (451)
T ss_dssp HHHHHHTSCTT
T ss_pred HHHHHHHhchh
Confidence 34555555554
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=40.68 E-value=2e+02 Score=25.68 Aligned_cols=16 Identities=6% Similarity=-0.087 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHhhh
Q 021377 150 FMNSAWFILQALILRK 165 (313)
Q Consensus 150 ~~~a~~~v~~k~~~~~ 165 (313)
+...+......++..+
T Consensus 65 ~~~~~~~~~~g~l~dr 80 (491)
T 4aps_A 65 SMVYLSGTIGGFVADR 80 (491)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3333444444444444
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=30.59 E-value=2.7e+02 Score=24.18 Aligned_cols=12 Identities=8% Similarity=0.445 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHh
Q 021377 244 IVFSIVMDVVIV 255 (313)
Q Consensus 244 pv~a~i~~~l~~ 255 (313)
.+++..++..+.
T Consensus 166 ~~~g~~~~~~l~ 177 (438)
T 3o7q_A 166 AIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHTTHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 11
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=24.09 E-value=52 Score=22.00 Aligned_cols=20 Identities=25% Similarity=0.574 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhccccc
Q 021377 264 LIGAMIIVAGFYAVMWGKSK 283 (313)
Q Consensus 264 ~~G~~lii~g~~l~~~~~~~ 283 (313)
++++++.+.|+++....|=|
T Consensus 25 ifA~vLfi~GI~iilS~kcr 44 (74)
T 2zxe_G 25 IVAAVLCVIGIIILLAGKCR 44 (74)
T ss_dssp HHHHHHHHHHHHHHTTTC--
T ss_pred hhHHHHHHHHHHHHHcCccc
Confidence 45566667888877755543
Done!