Query 021377
Match_columns 313
No_of_seqs 149 out of 1492
Neff 8.8
Searched_HMMs 13730
Date Mon Mar 25 03:15:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021377.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021377hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 58.8 44 0.0032 27.2 12.6 25 211-235 352-376 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 55.3 50 0.0036 26.8 14.2 16 263-278 187-202 (447)
3 d1pv7a_ f.38.1.2 (A:) Lactose 42.4 72 0.0053 24.9 9.9 8 226-233 336-343 (417)
4 d2e74g1 f.23.26.1 (G:9-35) Pet 20.3 48 0.0035 15.8 3.0 18 140-157 3-20 (27)
5 d1iwga8 f.35.1.1 (A:513-566,A: 15.9 2.1E+02 0.015 21.2 11.4 44 228-271 78-121 (222)
6 d1iwga7 f.35.1.1 (A:7-37,A:331 9.9 1.1E+02 0.0078 22.5 3.5 27 245-271 77-103 (199)
7 d1pv7a_ f.38.1.2 (A:) Lactose 9.9 1.9E+02 0.014 22.0 5.5 8 158-165 66-73 (417)
8 d2axtt1 f.23.34.1 (T:1-30) Pho 7.5 1.5E+02 0.011 14.3 3.7 18 174-191 5-22 (30)
9 d2r6gf1 e.70.1.1 (F:13-260) Ma 6.8 4E+02 0.029 20.1 5.8 59 36-104 5-63 (248)
10 d1kqfb2 f.23.22.1 (B:246-290) 6.5 2.3E+02 0.017 15.5 2.9 26 253-278 6-31 (45)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=58.82 E-value=44 Score=27.18 Aligned_cols=25 Identities=8% Similarity=-0.165 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHhccCCcee
Q 021377 211 YSAVIGTGFRVGLCTWCLSRTGPLY 235 (313)
Q Consensus 211 ~~g~~~s~~~~~l~~~a~~~~~a~~ 235 (313)
..|+.........+.......+...
T Consensus 352 ~~g~~~~~~~~~~~~~~~~~~p~~~ 376 (447)
T d1pw4a_ 352 VIGFLIYGPVMLIGLHALELAPKKA 376 (447)
T ss_dssp HHHHHHTHHHHHHHHHHHHTSCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 3444333334444555555555443
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=55.29 E-value=50 Score=26.78 Aligned_cols=16 Identities=13% Similarity=0.212 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHHHh
Q 021377 263 SLIGAMIIVAGFYAVM 278 (313)
Q Consensus 263 ~~~G~~lii~g~~l~~ 278 (313)
...+...++.++....
T Consensus 187 ~~~~~~~~~~~~~~~~ 202 (447)
T d1pw4a_ 187 YMPAFCAILVALFAFA 202 (447)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHH
Confidence 3344444445544443
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=42.41 E-value=72 Score=24.90 Aligned_cols=8 Identities=13% Similarity=0.027 Sum_probs=3.3
Q ss_pred HHhccCCc
Q 021377 226 WCLSRTGP 233 (313)
Q Consensus 226 ~a~~~~~a 233 (313)
...+..+.
T Consensus 336 ~~~~~~~~ 343 (417)
T d1pv7a_ 336 YITSQFEV 343 (417)
T ss_dssp HHHHHSCG
T ss_pred HHHHHCCH
Confidence 33444443
No 4
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=20.27 E-value=48 Score=15.79 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 021377 140 LGGFFLAAEAFMNSAWFI 157 (313)
Q Consensus 140 ~G~~~~l~s~~~~a~~~v 157 (313)
+|.+..-++.+.||.|.-
T Consensus 3 lgli~~tl~glf~aayqq 20 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 578888888899988754
No 5
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=15.86 E-value=2.1e+02 Score=21.20 Aligned_cols=44 Identities=9% Similarity=0.009 Sum_probs=26.4
Q ss_pred hccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHH
Q 021377 228 LSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIV 271 (313)
Q Consensus 228 ~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii 271 (313)
.+.............--+.+.+.+..+.+.+++....+|.++.+
T Consensus 78 frS~~~~liv~~~ipl~~~~~~~~l~~~g~~~~~~~~~g~i~l~ 121 (222)
T d1iwga8 78 YESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTI 121 (222)
T ss_dssp TCSSSHHHHGGGHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccccchh
Confidence 34444433333333333445566777899999998888777654
No 6
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=9.95 E-value=1.1e+02 Score=22.52 Aligned_cols=27 Identities=7% Similarity=0.198 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCccchhhHHHHHHHH
Q 021377 245 VFSIVMDVVIVGDAFCLGSLIGAMIIV 271 (313)
Q Consensus 245 v~a~i~~~l~~ge~~~~~~~~G~~lii 271 (313)
+........++|.+++.....+..+.+
T Consensus 77 i~~~~~~m~~~g~~l~~~s~~~~~i~i 103 (199)
T d1iwga7 77 LLGTFAVLAAFGFSINTLTMFGMVLAI 103 (199)
T ss_dssp HHHHHHHHHTTTCCSCHHHHHHHHHHH
T ss_pred hHHHHHHhhcCCCchHHHHHHHHHHHH
Confidence 334444456678888877776666554
No 7
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=9.90 E-value=1.9e+02 Score=22.02 Aligned_cols=8 Identities=13% Similarity=0.031 Sum_probs=3.8
Q ss_pred HHHHHhhh
Q 021377 158 LQALILRK 165 (313)
Q Consensus 158 ~~k~~~~~ 165 (313)
+.+|..++
T Consensus 66 l~Dr~grr 73 (417)
T d1pv7a_ 66 LSDKLGLR 73 (417)
T ss_dssp HHHHHTTC
T ss_pred HHHHhCch
Confidence 44555444
No 8
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.52 E-value=1.5e+02 Score=14.27 Aligned_cols=18 Identities=33% Similarity=0.621 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 021377 174 FYLFFFNTILSTAFALIV 191 (313)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~ 191 (313)
.|.+++++++.+.+..++
T Consensus 5 ~yv~ifac~i~lfffaif 22 (30)
T d2axtt1 5 TYVFIFACIIALFFFAIF 22 (30)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHHHH
Confidence 455556555555444333
No 9
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=6.83 E-value=4e+02 Score=20.13 Aligned_cols=59 Identities=8% Similarity=-0.096 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhh
Q 021377 36 FFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIG 104 (313)
Q Consensus 36 ~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~ 104 (313)
.+++|++.++..++....+..-+-..+. ..-+.+.++.++++.+|.-+. |++-=.+.++
T Consensus 5 ~~ll~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~------kyi~PG~~~l 63 (248)
T d2r6gf1 5 WSVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAW------RYVYPGMAGM 63 (248)
T ss_dssp HHHHHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccce------ehhhhHHHHH
Confidence 4566776655555555555444433333 223455666677887777666 6654333333
No 10
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=6.47 E-value=2.3e+02 Score=15.53 Aligned_cols=26 Identities=15% Similarity=0.047 Sum_probs=17.4
Q ss_pred HHhcCccchhhHHHHHHHHHHHHHHh
Q 021377 253 VIVGDAFCLGSLIGAMIIVAGFYAVM 278 (313)
Q Consensus 253 l~~ge~~~~~~~~G~~lii~g~~l~~ 278 (313)
-+++...-+...+|+...+++.++-.
T Consensus 6 ~lWKgv~Kpl~~~~~~~~~~~~~fHY 31 (45)
T d1kqfb2 6 SLWKGALKPLAAAGFIATFAGLIFHY 31 (45)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 34556666777778777777766644
Done!