Query 021380
Match_columns 313
No_of_seqs 462 out of 2247
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 02:30:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021380.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021380hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 3.6E-46 7.7E-51 318.5 9.6 200 76-284 1-226 (240)
2 COG1125 OpuBA ABC-type proline 100.0 1.6E-44 3.4E-49 314.6 10.2 208 77-300 1-235 (309)
3 COG3842 PotA ABC-type spermidi 100.0 3.4E-44 7.4E-49 332.2 10.1 217 75-307 3-243 (352)
4 COG1116 TauB ABC-type nitrate/ 100.0 1.9E-43 4E-48 309.5 11.4 182 76-266 2-196 (248)
5 COG3839 MalK ABC-type sugar tr 100.0 4E-43 8.6E-48 323.5 10.9 201 75-284 1-224 (338)
6 COG1135 AbcC ABC-type metal io 100.0 1.9E-42 4.2E-47 309.5 11.1 202 77-283 1-231 (339)
7 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 8.8E-42 1.9E-46 302.4 11.3 203 75-284 2-228 (254)
8 COG1120 FepC ABC-type cobalami 100.0 1.8E-41 4E-46 301.7 11.4 202 77-287 2-232 (258)
9 COG1118 CysA ABC-type sulfate/ 100.0 1.9E-41 4.1E-46 302.6 9.2 208 77-300 2-237 (345)
10 COG1127 Ttg2A ABC-type transpo 100.0 3.5E-41 7.7E-46 291.9 10.5 200 75-283 6-235 (263)
11 COG3638 ABC-type phosphate/pho 100.0 7.7E-41 1.7E-45 289.1 11.5 204 76-288 2-242 (258)
12 COG2884 FtsE Predicted ATPase 100.0 5.8E-41 1.2E-45 280.8 10.2 190 77-274 1-217 (223)
13 COG1124 DppF ABC-type dipeptid 100.0 2.2E-40 4.9E-45 287.9 11.0 205 75-284 1-232 (252)
14 COG1136 SalX ABC-type antimicr 100.0 2.8E-40 6E-45 288.8 10.8 185 77-266 1-208 (226)
15 COG4175 ProV ABC-type proline/ 100.0 1.3E-40 2.7E-45 297.9 8.6 215 75-301 2-265 (386)
16 COG1131 CcmA ABC-type multidru 100.0 1.7E-39 3.7E-44 298.6 12.7 201 75-284 2-227 (293)
17 COG1122 CbiO ABC-type cobalt t 100.0 5.8E-39 1.3E-43 284.7 13.0 202 76-285 2-230 (235)
18 COG4555 NatA ABC-type Na+ tran 100.0 2.3E-39 5E-44 273.5 8.7 200 77-284 1-223 (245)
19 TIGR03265 PhnT2 putative 2-ami 100.0 5.5E-39 1.2E-43 302.3 11.9 200 75-283 2-224 (353)
20 PRK11432 fbpC ferric transport 100.0 5.4E-39 1.2E-43 302.0 11.6 201 74-283 3-226 (351)
21 PRK11650 ugpC glycerol-3-phosp 100.0 4E-39 8.7E-44 303.6 9.9 200 75-283 1-224 (356)
22 COG1117 PstB ABC-type phosphat 100.0 2.4E-38 5.2E-43 269.6 12.5 203 75-284 5-238 (253)
23 PRK09452 potA putrescine/sperm 100.0 1.9E-38 4.1E-43 300.4 11.5 201 74-283 11-234 (375)
24 PRK13537 nodulation ABC transp 100.0 2.5E-38 5.3E-43 293.0 11.6 201 75-284 5-228 (306)
25 TIGR02314 ABC_MetN D-methionin 100.0 2.6E-38 5.5E-43 296.2 10.6 202 77-283 1-230 (343)
26 COG1137 YhbG ABC-type (unclass 100.0 2.3E-39 4.9E-44 273.2 2.9 210 75-293 2-238 (243)
27 PRK13536 nodulation factor exp 100.0 4.2E-38 9E-43 294.9 11.6 202 74-284 38-262 (340)
28 PRK11607 potG putrescine trans 100.0 9E-38 1.9E-42 296.2 11.9 201 74-283 16-239 (377)
29 TIGR03258 PhnT 2-aminoethylpho 100.0 9.3E-38 2E-42 294.6 11.0 199 77-284 5-229 (362)
30 PRK11000 maltose/maltodextrin 100.0 1.3E-37 2.8E-42 295.0 10.8 200 75-283 1-223 (369)
31 COG0411 LivG ABC-type branched 100.0 1E-37 2.3E-42 271.4 7.9 200 76-284 3-240 (250)
32 PRK10851 sulfate/thiosulfate t 100.0 3.3E-37 7.1E-42 290.3 11.3 198 77-283 2-226 (353)
33 COG4152 ABC-type uncharacteriz 100.0 3.7E-37 8E-42 267.0 9.9 199 77-284 2-220 (300)
34 TIGR01288 nodI ATP-binding ABC 100.0 4.3E-37 9.4E-42 284.5 11.0 199 77-284 4-225 (303)
35 PRK11022 dppD dipeptide transp 100.0 6.3E-37 1.4E-41 285.8 11.5 209 75-283 1-243 (326)
36 PRK09536 btuD corrinoid ABC tr 100.0 6.8E-37 1.5E-41 291.6 10.3 199 75-282 1-227 (402)
37 cd03265 ABC_DrrA DrrA is the A 100.0 6.7E-37 1.5E-41 270.6 9.5 194 78-280 1-218 (220)
38 PRK15079 oligopeptide ABC tran 100.0 1.1E-36 2.3E-41 284.6 10.3 206 75-283 6-251 (331)
39 cd03261 ABC_Org_Solvent_Resist 100.0 8.5E-37 1.8E-41 272.6 9.1 196 78-282 1-225 (235)
40 PRK11153 metN DL-methionine tr 100.0 1.2E-36 2.5E-41 285.9 10.5 201 77-282 1-229 (343)
41 COG1123 ATPase components of v 100.0 1.9E-36 4.1E-41 292.0 11.9 207 74-283 277-519 (539)
42 PRK11308 dppF dipeptide transp 100.0 2.2E-36 4.7E-41 282.2 11.7 206 75-283 3-244 (327)
43 TIGR03522 GldA_ABC_ATP gliding 100.0 2E-36 4.4E-41 279.7 11.2 199 77-284 2-222 (301)
44 COG0444 DppD ABC-type dipeptid 100.0 2.2E-36 4.9E-41 273.4 10.9 208 77-284 1-244 (316)
45 COG4525 TauB ABC-type taurine 100.0 3.9E-36 8.5E-41 252.8 11.3 197 75-278 1-219 (259)
46 PRK13637 cbiO cobalt transport 100.0 3.1E-36 6.7E-41 276.8 11.1 203 77-283 2-234 (287)
47 COG0410 LivF ABC-type branched 100.0 2.5E-36 5.4E-41 260.9 9.6 201 75-284 1-227 (237)
48 cd03263 ABC_subfamily_A The AB 100.0 2.4E-36 5.3E-41 266.9 9.6 194 78-280 1-218 (220)
49 cd03258 ABC_MetN_methionine_tr 100.0 3.1E-36 6.7E-41 268.6 9.9 200 77-281 1-228 (233)
50 cd03259 ABC_Carb_Solutes_like 100.0 1.9E-36 4.2E-41 266.3 8.4 180 78-266 1-196 (213)
51 PRK15093 antimicrobial peptide 100.0 6E-36 1.3E-40 279.8 11.9 209 75-283 1-248 (330)
52 cd03296 ABC_CysA_sulfate_impor 100.0 3.9E-36 8.4E-41 269.1 10.2 197 77-282 2-225 (239)
53 PRK09473 oppD oligopeptide tra 100.0 6.5E-36 1.4E-40 279.3 12.0 207 74-283 9-251 (330)
54 TIGR01186 proV glycine betaine 100.0 2.5E-36 5.4E-41 284.4 9.3 190 85-283 1-219 (363)
55 PRK11831 putative ABC transpor 100.0 4.9E-36 1.1E-40 273.0 10.9 199 75-282 5-232 (269)
56 COG4181 Predicted ABC-type tra 100.0 1E-35 2.2E-40 245.5 11.5 185 77-266 6-212 (228)
57 TIGR00960 3a0501s02 Type II (G 100.0 5.1E-36 1.1E-40 264.2 10.5 181 77-266 1-203 (216)
58 PRK11264 putative amino-acid A 100.0 5.9E-36 1.3E-40 269.5 11.1 199 75-282 1-232 (250)
59 PRK13651 cobalt transporter AT 100.0 4.7E-36 1E-40 277.5 10.6 202 77-283 2-254 (305)
60 PRK11629 lolD lipoprotein tran 100.0 4.8E-36 1.1E-40 267.4 10.0 186 76-266 4-211 (233)
61 PRK10070 glycine betaine trans 100.0 7.8E-36 1.7E-40 284.2 12.1 183 96-283 43-254 (400)
62 PRK13634 cbiO cobalt transport 100.0 6.1E-36 1.3E-40 275.2 10.6 202 77-283 2-235 (290)
63 COG3840 ThiQ ABC-type thiamine 100.0 6.7E-36 1.5E-40 248.8 9.1 197 77-284 1-220 (231)
64 cd03260 ABC_PstB_phosphate_tra 100.0 5.2E-36 1.1E-40 266.1 9.0 193 78-280 1-226 (227)
65 PRK13641 cbiO cobalt transport 100.0 1.1E-35 2.3E-40 273.2 11.2 202 77-283 2-234 (287)
66 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.1E-35 2.4E-40 265.6 10.8 199 77-284 1-222 (236)
67 cd03218 ABC_YhbG The ABC trans 100.0 7.5E-36 1.6E-40 265.8 9.7 195 78-281 1-220 (232)
68 TIGR03415 ABC_choXWV_ATP choli 100.0 1.1E-35 2.3E-40 281.5 10.9 194 81-283 28-254 (382)
69 TIGR01188 drrA daunorubicin re 100.0 5.9E-36 1.3E-40 276.8 8.9 191 85-284 1-214 (302)
70 PRK13643 cbiO cobalt transport 100.0 1E-35 2.2E-40 273.4 10.5 202 77-283 1-233 (288)
71 cd03219 ABC_Mj1267_LivG_branch 100.0 9.4E-36 2E-40 265.9 9.7 195 78-281 1-230 (236)
72 PRK10895 lipopolysaccharide AB 100.0 1E-35 2.2E-40 266.6 9.8 199 75-282 1-225 (241)
73 cd03301 ABC_MalK_N The N-termi 100.0 9.1E-36 2E-40 262.0 9.3 180 78-266 1-196 (213)
74 cd03269 ABC_putative_ATPase Th 100.0 8.2E-36 1.8E-40 261.8 8.9 180 78-266 1-193 (210)
75 cd03266 ABC_NatA_sodium_export 100.0 7.9E-36 1.7E-40 263.3 8.8 185 77-266 1-201 (218)
76 COG4598 HisP ABC-type histidin 100.0 4.3E-36 9.4E-41 249.5 6.5 201 75-284 4-242 (256)
77 PRK13647 cbiO cobalt transport 100.0 1.2E-35 2.6E-40 271.2 10.0 197 77-281 4-225 (274)
78 PRK14247 phosphate ABC transpo 100.0 3E-35 6.5E-40 265.0 12.3 200 75-283 1-234 (250)
79 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.9E-35 4.2E-40 260.8 10.8 179 78-265 1-205 (218)
80 COG1123 ATPase components of v 100.0 1.9E-35 4.2E-40 285.0 11.6 206 76-284 4-245 (539)
81 cd03256 ABC_PhnC_transporter A 100.0 2.1E-35 4.6E-40 264.3 11.0 197 78-283 1-234 (241)
82 PRK13652 cbiO cobalt transport 100.0 2.2E-35 4.7E-40 269.9 11.2 201 75-283 1-227 (277)
83 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.8E-35 3.9E-40 265.2 10.4 196 78-282 1-224 (242)
84 PRK13638 cbiO cobalt transport 100.0 1.4E-35 3.1E-40 270.2 10.0 199 77-283 1-225 (271)
85 cd03224 ABC_TM1139_LivF_branch 100.0 1.5E-35 3.3E-40 262.0 9.8 193 78-281 1-219 (222)
86 TIGR02315 ABC_phnC phosphonate 100.0 1.4E-35 3.1E-40 265.8 9.5 196 77-281 1-233 (243)
87 PRK09493 glnQ glutamine ABC tr 100.0 2.1E-35 4.5E-40 264.4 10.1 197 77-282 1-224 (240)
88 PRK14267 phosphate ABC transpo 100.0 4.1E-35 8.8E-40 264.5 11.9 199 75-282 2-236 (253)
89 TIGR02673 FtsE cell division A 100.0 3.4E-35 7.3E-40 258.5 10.9 181 77-266 1-202 (214)
90 TIGR00972 3a0107s01c2 phosphat 100.0 3.9E-35 8.4E-40 263.8 11.4 196 77-282 1-231 (247)
91 PRK13650 cbiO cobalt transport 100.0 2.2E-35 4.9E-40 270.0 10.0 203 76-283 3-229 (279)
92 PRK13548 hmuV hemin importer A 100.0 3.5E-35 7.5E-40 265.9 11.0 198 77-283 2-230 (258)
93 cd03235 ABC_Metallic_Cations A 100.0 1.6E-35 3.4E-40 260.5 8.5 181 79-266 1-197 (213)
94 cd03268 ABC_BcrA_bacitracin_re 100.0 2.2E-35 4.8E-40 258.6 9.3 176 78-266 1-191 (208)
95 cd03264 ABC_drug_resistance_li 100.0 1.9E-35 4.1E-40 259.7 8.7 179 78-266 1-194 (211)
96 TIGR03411 urea_trans_UrtD urea 100.0 4.9E-35 1.1E-39 262.3 11.5 198 76-282 1-230 (242)
97 cd03293 ABC_NrtD_SsuB_transpor 100.0 5E-35 1.1E-39 258.6 11.2 180 78-266 1-197 (220)
98 PRK13636 cbiO cobalt transport 100.0 3.8E-35 8.2E-40 269.0 10.6 200 76-283 4-231 (283)
99 TIGR03410 urea_trans_UrtE urea 100.0 3.7E-35 8.1E-40 261.1 9.8 195 78-284 1-222 (230)
100 PRK13644 cbiO cobalt transport 100.0 3.1E-35 6.6E-40 268.5 9.5 199 77-283 1-224 (274)
101 PRK13646 cbiO cobalt transport 100.0 3.2E-35 6.9E-40 269.9 9.6 202 77-283 2-235 (286)
102 PRK11124 artP arginine transpo 100.0 4.2E-35 9.1E-40 262.8 10.2 196 77-281 2-228 (242)
103 PRK11248 tauB taurine transpor 100.0 8E-35 1.7E-39 263.1 11.7 181 77-266 1-194 (255)
104 PRK13631 cbiO cobalt transport 100.0 8.5E-35 1.8E-39 270.7 11.8 203 75-282 19-264 (320)
105 cd03226 ABC_cobalt_CbiO_domain 100.0 3.7E-35 8.1E-40 256.7 8.8 176 79-266 1-191 (205)
106 TIGR02211 LolD_lipo_ex lipopro 100.0 9.4E-35 2E-39 256.9 11.4 185 77-266 1-207 (221)
107 PRK14268 phosphate ABC transpo 100.0 6.8E-35 1.5E-39 263.9 10.8 198 75-282 10-241 (258)
108 TIGR02769 nickel_nikE nickel i 100.0 7.2E-35 1.6E-39 264.8 10.8 203 77-282 2-239 (265)
109 PRK14273 phosphate ABC transpo 100.0 1E-34 2.2E-39 262.2 11.7 199 75-283 5-238 (254)
110 cd03294 ABC_Pro_Gly_Bertaine T 100.0 4E-35 8.7E-40 267.0 9.1 196 79-283 26-250 (269)
111 PRK11701 phnK phosphonate C-P 100.0 1.2E-34 2.7E-39 262.2 12.3 200 76-282 5-240 (258)
112 PRK13635 cbiO cobalt transport 100.0 5.7E-35 1.2E-39 267.3 10.0 200 76-283 4-229 (279)
113 PRK10619 histidine/lysine/argi 100.0 8.1E-35 1.7E-39 263.3 10.8 199 76-283 4-241 (257)
114 PRK10908 cell division protein 100.0 8.8E-35 1.9E-39 257.4 10.8 181 77-266 1-202 (222)
115 PRK14242 phosphate transporter 100.0 1.5E-34 3.3E-39 260.8 12.5 201 75-282 4-236 (253)
116 cd03257 ABC_NikE_OppD_transpor 100.0 9.2E-35 2E-39 258.0 10.7 187 77-266 1-211 (228)
117 PRK11614 livF leucine/isoleuci 100.0 6.3E-35 1.4E-39 260.8 9.3 197 75-282 3-225 (237)
118 PRK10584 putative ABC transpor 100.0 2.1E-34 4.5E-39 256.0 12.5 185 76-265 5-211 (228)
119 cd03225 ABC_cobalt_CbiO_domain 100.0 1.2E-34 2.5E-39 254.6 10.7 180 79-266 1-199 (211)
120 PRK14250 phosphate ABC transpo 100.0 9.9E-35 2.2E-39 260.3 10.3 194 75-282 1-220 (241)
121 PRK14241 phosphate transporter 100.0 2.1E-34 4.6E-39 260.7 12.6 198 77-283 4-242 (258)
122 PRK15112 antimicrobial peptide 100.0 1E-34 2.2E-39 264.1 10.4 205 76-283 3-239 (267)
123 PRK14270 phosphate ABC transpo 100.0 2.5E-34 5.3E-39 259.2 12.4 199 75-283 2-235 (251)
124 PRK13633 cobalt transporter AT 100.0 9.7E-35 2.1E-39 266.0 9.9 204 76-283 3-233 (280)
125 PRK14235 phosphate transporter 100.0 2.4E-34 5.2E-39 261.7 12.0 199 74-282 16-250 (267)
126 PRK11247 ssuB aliphatic sulfon 100.0 9.9E-35 2.1E-39 262.6 9.3 187 76-277 11-217 (257)
127 PRK13639 cbiO cobalt transport 100.0 1.1E-34 2.3E-39 265.1 9.4 198 77-283 1-226 (275)
128 PRK11231 fecE iron-dicitrate t 100.0 1.4E-34 3E-39 261.5 10.0 197 77-282 2-226 (255)
129 PRK11144 modC molybdate transp 100.0 1.9E-34 4.2E-39 271.8 11.2 190 77-284 1-219 (352)
130 PRK13649 cbiO cobalt transport 100.0 1.5E-34 3.4E-39 264.6 10.2 202 77-283 2-234 (280)
131 PRK14274 phosphate ABC transpo 100.0 2.6E-34 5.6E-39 260.3 11.5 202 75-283 10-243 (259)
132 PRK10261 glutathione transport 100.0 2.1E-34 4.5E-39 290.3 11.7 206 75-283 311-553 (623)
133 PRK10744 pstB phosphate transp 100.0 4E-34 8.7E-39 259.2 12.3 202 75-283 11-244 (260)
134 TIGR03005 ectoine_ehuA ectoine 100.0 1.8E-34 3.9E-39 260.2 9.6 196 78-282 1-235 (252)
135 PRK14262 phosphate ABC transpo 100.0 4.9E-34 1.1E-38 257.0 12.1 199 75-283 1-234 (250)
136 cd03262 ABC_HisP_GlnQ_permease 100.0 3.2E-34 6.9E-39 252.1 10.6 180 78-266 1-200 (213)
137 PRK11300 livG leucine/isoleuci 100.0 3.4E-34 7.3E-39 258.8 10.9 198 76-282 4-242 (255)
138 PRK10575 iron-hydroxamate tran 100.0 2E-34 4.2E-39 262.0 9.4 198 76-282 10-236 (265)
139 PRK14269 phosphate ABC transpo 100.0 4.1E-34 8.8E-39 257.1 11.3 199 77-282 2-229 (246)
140 PRK10261 glutathione transport 100.0 2.9E-34 6.2E-39 289.2 11.4 205 75-282 10-257 (623)
141 PRK14239 phosphate transporter 100.0 5.5E-34 1.2E-38 257.0 12.1 198 76-283 4-236 (252)
142 cd03292 ABC_FtsE_transporter F 100.0 3.8E-34 8.2E-39 251.7 10.8 180 78-266 1-201 (214)
143 PRK13632 cbiO cobalt transport 100.0 2.8E-34 6.1E-39 261.8 10.1 199 76-283 6-231 (271)
144 COG4604 CeuD ABC-type enteroch 100.0 3.5E-35 7.5E-40 247.4 3.8 200 77-285 1-227 (252)
145 COG4559 ABC-type hemin transpo 100.0 1.9E-34 4.2E-39 245.5 8.1 199 77-284 1-231 (259)
146 TIGR02323 CP_lyasePhnK phospho 100.0 5.3E-34 1.2E-38 257.2 11.5 201 76-283 2-238 (253)
147 PRK10419 nikE nickel transport 100.0 4.4E-34 9.6E-39 260.0 11.1 201 75-282 1-240 (268)
148 PRK13549 xylose transporter AT 100.0 2E-34 4.2E-39 284.3 9.4 198 75-281 3-230 (506)
149 PRK10771 thiQ thiamine transpo 100.0 4.1E-34 8.9E-39 254.8 10.5 196 77-283 1-219 (232)
150 TIGR03608 L_ocin_972_ABC putat 100.0 4.3E-34 9.2E-39 250.0 10.4 176 80-264 1-197 (206)
151 PRK14248 phosphate ABC transpo 100.0 1E-33 2.3E-38 257.6 13.2 202 74-282 18-251 (268)
152 PRK09984 phosphonate/organopho 100.0 4.1E-34 9E-39 259.3 10.6 197 76-281 3-240 (262)
153 PRK14256 phosphate ABC transpo 100.0 9.8E-34 2.1E-38 255.4 12.8 202 76-283 3-236 (252)
154 PRK14240 phosphate transporter 100.0 8.8E-34 1.9E-38 255.4 12.5 201 75-282 1-233 (250)
155 PRK13538 cytochrome c biogenes 100.0 5.9E-34 1.3E-38 249.1 11.0 178 77-266 1-194 (204)
156 PRK14245 phosphate ABC transpo 100.0 7.7E-34 1.7E-38 255.8 11.8 198 76-283 2-234 (250)
157 PRK13640 cbiO cobalt transport 100.0 3.2E-34 6.9E-39 262.8 9.3 202 76-283 4-232 (282)
158 PRK13645 cbiO cobalt transport 100.0 3.5E-34 7.7E-39 263.4 9.7 202 77-282 6-239 (289)
159 PRK10253 iron-enterobactin tra 100.0 4E-34 8.8E-39 259.9 9.9 199 76-283 6-233 (265)
160 PRK10762 D-ribose transporter 100.0 2.3E-34 4.9E-39 283.5 8.8 197 76-281 3-228 (501)
161 PRK14253 phosphate ABC transpo 100.0 8E-34 1.7E-38 255.5 11.6 198 75-282 1-232 (249)
162 TIGR03873 F420-0_ABC_ATP propo 100.0 4.2E-34 9.1E-39 258.4 9.7 196 78-282 2-225 (256)
163 PRK14254 phosphate ABC transpo 100.0 1.2E-33 2.6E-38 259.3 12.8 201 74-282 36-268 (285)
164 PRK13648 cbiO cobalt transport 100.0 4.2E-34 9.2E-39 260.3 9.6 202 76-283 6-231 (269)
165 PRK10418 nikD nickel transport 100.0 1.2E-33 2.6E-38 255.2 12.3 196 77-282 4-229 (254)
166 PRK14237 phosphate transporter 100.0 1.2E-33 2.5E-38 257.1 11.9 200 76-282 19-250 (267)
167 TIGR03740 galliderm_ABC gallid 100.0 5.7E-34 1.2E-38 252.4 9.6 190 78-280 1-210 (223)
168 cd03298 ABC_ThiQ_thiamine_tran 100.0 4.9E-34 1.1E-38 250.7 8.9 178 78-266 1-194 (211)
169 PRK10247 putative ABC transpor 100.0 1.2E-33 2.6E-38 250.8 11.4 178 76-265 6-202 (225)
170 PRK15439 autoinducer 2 ABC tra 100.0 7.3E-34 1.6E-38 280.5 10.9 196 74-282 8-228 (510)
171 PRK14272 phosphate ABC transpo 100.0 1.7E-33 3.6E-38 253.8 12.1 198 77-283 4-236 (252)
172 PRK13642 cbiO cobalt transport 100.0 7.7E-34 1.7E-38 259.7 9.9 201 77-283 4-229 (277)
173 TIGR02142 modC_ABC molybdenum 100.0 8.5E-34 1.8E-38 267.7 10.4 189 82-283 4-221 (354)
174 PRK14259 phosphate ABC transpo 100.0 1.6E-33 3.5E-38 256.5 11.5 200 76-283 12-253 (269)
175 PRK14251 phosphate ABC transpo 100.0 2.2E-33 4.8E-38 253.0 12.2 200 76-282 3-234 (251)
176 TIGR01978 sufC FeS assembly AT 100.0 1.2E-33 2.5E-38 253.4 10.3 195 78-281 1-232 (243)
177 PRK09700 D-allose transporter 100.0 6.3E-34 1.4E-38 281.0 9.3 198 76-282 4-233 (510)
178 PRK14275 phosphate ABC transpo 100.0 2E-33 4.4E-38 258.0 11.9 202 74-283 36-270 (286)
179 PRK09544 znuC high-affinity zi 100.0 1.8E-33 3.9E-38 253.6 11.1 190 76-282 3-208 (251)
180 PRK15056 manganese/iron transp 100.0 1.2E-33 2.5E-38 257.8 9.9 199 77-282 6-229 (272)
181 TIGR01277 thiQ thiamine ABC tr 100.0 1.5E-33 3.2E-38 248.1 10.2 188 78-276 1-211 (213)
182 PRK13543 cytochrome c biogenes 100.0 4.8E-33 1E-37 245.1 13.3 180 75-266 9-202 (214)
183 cd03300 ABC_PotA_N PotA is an 100.0 1.6E-33 3.5E-38 251.1 10.2 197 78-283 1-220 (232)
184 PRK13547 hmuV hemin importer A 100.0 1.1E-33 2.3E-38 257.9 8.9 197 77-282 1-243 (272)
185 TIGR02324 CP_lyasePhnL phospho 100.0 4.7E-33 1E-37 246.6 12.8 185 77-266 1-214 (224)
186 PRK13539 cytochrome c biogenes 100.0 2.4E-33 5.2E-38 245.8 10.8 177 77-266 2-192 (207)
187 PRK15134 microcin C ABC transp 100.0 2.1E-33 4.5E-38 278.5 11.5 205 75-282 3-245 (529)
188 PRK14249 phosphate ABC transpo 100.0 4E-33 8.7E-38 251.3 12.3 198 76-283 3-235 (251)
189 PRK14271 phosphate ABC transpo 100.0 2.4E-33 5.3E-38 256.2 10.9 198 76-283 20-251 (276)
190 PRK14261 phosphate ABC transpo 100.0 4E-33 8.6E-38 251.6 11.4 200 75-282 4-236 (253)
191 PRK14260 phosphate ABC transpo 100.0 6E-33 1.3E-37 251.3 12.6 199 75-283 5-243 (259)
192 TIGR03269 met_CoM_red_A2 methy 100.0 3.5E-33 7.7E-38 276.3 12.0 200 78-285 1-260 (520)
193 TIGR00968 3a0106s01 sulfate AB 100.0 1.9E-33 4.1E-38 251.4 9.0 196 78-282 1-219 (237)
194 PRK14243 phosphate transporter 100.0 5.1E-33 1.1E-37 252.5 11.7 200 76-283 9-248 (264)
195 COG1134 TagH ABC-type polysacc 100.0 5.6E-33 1.2E-37 242.2 11.3 186 93-287 39-240 (249)
196 PRK14255 phosphate ABC transpo 100.0 7.9E-33 1.7E-37 249.5 12.6 200 76-283 4-236 (252)
197 cd03299 ABC_ModC_like Archeal 100.0 3.9E-33 8.4E-38 249.1 10.3 195 78-282 1-218 (235)
198 PRK15134 microcin C ABC transp 100.0 3.2E-33 6.9E-38 277.1 10.8 205 75-283 273-515 (529)
199 PRK14238 phosphate transporter 100.0 6.3E-33 1.4E-37 252.9 11.5 201 75-282 22-254 (271)
200 PRK14236 phosphate transporter 100.0 6.4E-33 1.4E-37 252.9 11.5 201 75-282 23-255 (272)
201 TIGR03269 met_CoM_red_A2 methy 100.0 4.9E-33 1.1E-37 275.3 11.4 203 75-283 277-517 (520)
202 cd03297 ABC_ModC_molybdenum_tr 100.0 3.3E-33 7.1E-38 246.0 9.1 174 78-266 2-197 (214)
203 PRK13540 cytochrome c biogenes 100.0 9.5E-33 2.1E-37 240.7 11.7 175 77-265 1-191 (200)
204 COG4608 AppF ABC-type oligopep 100.0 7.6E-33 1.6E-37 245.6 11.0 176 75-284 2-200 (268)
205 TIGR01189 ccmA heme ABC export 100.0 9.3E-33 2E-37 240.4 10.5 175 78-265 1-191 (198)
206 cd03231 ABC_CcmA_heme_exporter 100.0 9.3E-33 2E-37 241.0 10.4 174 78-266 1-190 (201)
207 cd03267 ABC_NatA_like Similar 100.0 3.7E-33 8.1E-38 249.4 8.0 174 85-266 29-219 (236)
208 TIGR01166 cbiO cobalt transpor 100.0 4.5E-33 9.8E-38 240.7 8.2 163 96-263 7-189 (190)
209 COG1129 MglA ABC-type sugar tr 100.0 4.5E-33 9.8E-38 266.9 9.0 194 75-277 6-228 (500)
210 PRK14246 phosphate ABC transpo 100.0 1.2E-32 2.6E-37 249.1 11.1 200 75-283 8-241 (257)
211 PRK11288 araG L-arabinose tran 100.0 4.9E-33 1.1E-37 274.1 9.1 194 75-277 2-223 (501)
212 PRK14265 phosphate ABC transpo 100.0 1.7E-32 3.7E-37 250.4 11.6 202 74-283 17-258 (274)
213 PRK14258 phosphate ABC transpo 100.0 1.9E-32 4.1E-37 248.4 11.6 198 76-283 6-245 (261)
214 PRK11819 putative ABC transpor 100.0 2.7E-32 5.8E-37 271.9 13.6 195 75-281 4-248 (556)
215 COG4161 ArtP ABC-type arginine 100.0 1.3E-32 2.7E-37 225.3 9.1 194 77-279 2-226 (242)
216 PRK14266 phosphate ABC transpo 100.0 2E-32 4.3E-37 246.6 11.3 201 75-282 1-233 (250)
217 TIGR01257 rim_protein retinal- 100.0 1.1E-32 2.3E-37 299.9 11.2 202 75-285 1935-2161(2272)
218 cd03252 ABCC_Hemolysin The ABC 100.0 2.4E-33 5.1E-38 250.6 4.9 191 78-284 1-226 (237)
219 TIGR02633 xylG D-xylose ABC tr 100.0 7.9E-33 1.7E-37 272.6 9.1 196 77-281 1-228 (500)
220 TIGR02982 heterocyst_DevA ABC 100.0 1.7E-32 3.7E-37 242.5 10.1 183 77-264 1-205 (220)
221 PRK14244 phosphate ABC transpo 100.0 1.7E-32 3.7E-37 247.2 9.9 198 78-282 6-236 (251)
222 PRK15064 ABC transporter ATP-b 100.0 2.8E-32 6.2E-37 270.4 12.4 193 76-283 318-525 (530)
223 PRK14252 phosphate ABC transpo 100.0 3.3E-32 7.2E-37 247.3 11.6 197 76-282 15-248 (265)
224 PRK13549 xylose transporter AT 100.0 9.4E-33 2E-37 272.4 8.6 199 76-281 258-492 (506)
225 PRK10938 putative molybdenum t 100.0 1.6E-32 3.4E-37 269.9 10.0 193 75-282 1-223 (490)
226 PRK14257 phosphate ABC transpo 100.0 3.8E-32 8.2E-37 253.7 12.0 203 76-283 79-313 (329)
227 TIGR02770 nickel_nikD nickel i 100.0 2E-32 4.3E-37 243.7 9.5 184 96-282 1-214 (230)
228 COG4172 ABC-type uncharacteriz 100.0 6E-32 1.3E-36 248.9 12.7 206 75-284 274-517 (534)
229 PRK10982 galactose/methyl gala 100.0 1.2E-32 2.7E-37 270.6 8.7 193 80-281 1-221 (491)
230 COG2274 SunT ABC-type bacterio 100.0 2.6E-32 5.7E-37 274.9 11.3 194 77-284 471-697 (709)
231 PRK15064 ABC transporter ATP-b 100.0 4.5E-32 9.8E-37 268.9 12.7 194 77-282 1-241 (530)
232 PRK10636 putative ABC transpor 100.0 1.9E-32 4E-37 276.5 10.0 194 74-283 309-517 (638)
233 PRK14263 phosphate ABC transpo 100.0 5.6E-32 1.2E-36 245.3 12.0 197 76-283 7-245 (261)
234 PRK13541 cytochrome c biogenes 100.0 3.7E-32 8E-37 236.1 10.4 175 77-266 1-188 (195)
235 COG4148 ModC ABC-type molybdat 100.0 3.1E-32 6.7E-37 240.4 9.1 186 82-284 5-219 (352)
236 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.2E-32 2.7E-37 244.2 6.6 176 78-266 23-207 (224)
237 cd03251 ABCC_MsbA MsbA is an e 100.0 9.4E-33 2E-37 246.2 5.8 194 78-283 1-225 (234)
238 PRK14264 phosphate ABC transpo 100.0 1.1E-31 2.3E-36 248.7 12.8 201 75-282 43-288 (305)
239 COG3845 ABC-type uncharacteriz 100.0 5.9E-32 1.3E-36 255.0 11.0 183 75-266 2-205 (501)
240 cd03254 ABCC_Glucan_exporter_l 100.0 3.3E-32 7.2E-37 241.9 8.8 189 78-282 3-225 (229)
241 TIGR01257 rim_protein retinal- 100.0 5E-32 1.1E-36 294.7 11.7 201 75-284 926-1150(2272)
242 cd03245 ABCC_bacteriocin_expor 100.0 4E-32 8.7E-37 239.9 8.8 171 78-264 3-202 (220)
243 CHL00131 ycf16 sulfate ABC tra 100.0 8.3E-32 1.8E-36 242.8 10.8 195 76-279 6-237 (252)
244 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.7E-31 3.7E-36 265.9 13.5 193 77-281 4-246 (552)
245 PRK11147 ABC transporter ATPas 100.0 9.2E-32 2E-36 271.7 11.7 180 74-266 316-502 (635)
246 PRK13546 teichoic acids export 100.0 1.5E-31 3.3E-36 242.7 11.4 198 77-284 4-233 (264)
247 cd03289 ABCC_CFTR2 The CFTR su 100.0 8.1E-32 1.8E-36 245.6 9.2 188 78-283 3-225 (275)
248 TIGR01184 ntrCD nitrate transp 100.0 7.4E-32 1.6E-36 240.1 8.1 179 97-280 1-201 (230)
249 PRK09700 D-allose transporter 100.0 6E-32 1.3E-36 266.9 8.1 193 76-278 264-493 (510)
250 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 3.1E-32 6.6E-37 243.6 5.4 197 78-283 1-226 (238)
251 cd03369 ABCC_NFT1 Domain 2 of 100.0 2E-31 4.3E-36 233.5 10.5 170 77-266 6-189 (207)
252 cd03244 ABCC_MRP_domain2 Domai 100.0 8.7E-32 1.9E-36 237.9 8.1 174 78-266 3-203 (221)
253 PRK09580 sufC cysteine desulfu 100.0 2.8E-31 6.2E-36 238.6 11.4 195 77-280 1-232 (248)
254 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3E-31 6.5E-36 264.2 12.8 197 75-284 320-532 (552)
255 cd03234 ABCG_White The White s 100.0 2.4E-31 5.3E-36 236.1 10.7 188 77-266 3-209 (226)
256 PRK13545 tagH teichoic acids e 100.0 1.8E-31 4E-36 258.4 10.6 198 76-284 20-233 (549)
257 cd03247 ABCC_cytochrome_bd The 100.0 7.4E-32 1.6E-36 230.9 6.8 147 78-266 1-162 (178)
258 cd03248 ABCC_TAP TAP, the Tran 100.0 8.8E-32 1.9E-36 238.8 7.4 184 75-265 9-213 (226)
259 TIGR02633 xylG D-xylose ABC tr 100.0 7E-32 1.5E-36 265.8 7.4 194 76-277 256-486 (500)
260 PRK11819 putative ABC transpor 100.0 3.6E-31 7.8E-36 263.8 12.5 197 75-284 322-534 (556)
261 COG4619 ABC-type uncharacteriz 100.0 4.9E-32 1.1E-36 223.0 5.0 178 77-266 3-199 (223)
262 COG4172 ABC-type uncharacteriz 100.0 7.1E-31 1.5E-35 241.8 13.1 211 74-284 3-248 (534)
263 cd03213 ABCG_EPDR ABCG transpo 100.0 1.7E-31 3.8E-36 231.8 8.7 153 77-265 3-176 (194)
264 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.6E-31 3.4E-36 272.6 9.9 192 77-283 451-673 (686)
265 PRK11176 lipid transporter ATP 100.0 1.9E-31 4.2E-36 267.3 10.0 195 77-284 341-568 (582)
266 cd03223 ABCD_peroxisomal_ALDP 100.0 3.6E-31 7.8E-36 224.3 10.1 146 78-264 1-151 (166)
267 cd03230 ABC_DR_subfamily_A Thi 100.0 3.7E-31 7.9E-36 225.6 9.9 146 78-266 1-160 (173)
268 PRK03695 vitamin B12-transport 100.0 1.3E-31 2.9E-36 241.1 7.4 189 79-282 2-221 (248)
269 COG4167 SapF ABC-type antimicr 100.0 2.8E-31 6E-36 221.5 8.6 207 75-284 2-240 (267)
270 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 2.5E-31 5.4E-36 272.1 10.2 193 77-283 477-700 (710)
271 KOG0058 Peptide exporter, ABC 100.0 1.1E-31 2.4E-36 263.1 7.0 195 77-284 465-692 (716)
272 cd03253 ABCC_ATM1_transporter 100.0 9.4E-32 2E-36 240.0 6.0 190 78-283 1-224 (236)
273 cd03215 ABC_Carb_Monos_II This 100.0 8.5E-31 1.8E-35 225.2 11.3 150 76-266 3-169 (182)
274 COG4988 CydD ABC-type transpor 100.0 6.6E-31 1.4E-35 252.9 11.2 192 78-284 321-544 (559)
275 cd03232 ABC_PDR_domain2 The pl 100.0 4.4E-31 9.4E-36 228.9 9.0 155 77-263 3-170 (192)
276 cd03246 ABCC_Protease_Secretio 100.0 6.6E-31 1.4E-35 224.1 9.5 145 78-265 1-160 (173)
277 cd03229 ABC_Class3 This class 100.0 5.9E-31 1.3E-35 225.4 9.2 148 78-266 1-166 (178)
278 COG4586 ABC-type uncharacteriz 100.0 4.4E-31 9.5E-36 232.5 8.4 205 76-285 2-248 (325)
279 PRK11147 ABC transporter ATPas 100.0 1.7E-30 3.7E-35 262.5 13.9 196 75-282 1-242 (635)
280 PRK11174 cysteine/glutathione 100.0 6.6E-31 1.4E-35 263.7 10.6 191 77-284 349-573 (588)
281 cd03233 ABC_PDR_domain1 The pl 100.0 8E-31 1.7E-35 229.0 9.5 167 77-266 3-185 (202)
282 COG1119 ModF ABC-type molybden 100.0 2.7E-31 5.8E-36 231.5 6.3 196 74-276 28-255 (257)
283 COG4674 Uncharacterized ABC-ty 100.0 6.7E-31 1.5E-35 221.1 8.4 198 76-282 4-234 (249)
284 PRK10762 D-ribose transporter 100.0 3.9E-31 8.4E-36 260.6 8.1 193 76-281 256-482 (501)
285 COG0488 Uup ATPase components 100.0 1.6E-30 3.4E-35 254.5 12.3 176 74-266 318-501 (530)
286 cd03250 ABCC_MRP_domain1 Domai 100.0 2.4E-30 5.2E-35 226.1 12.2 171 78-266 1-193 (204)
287 TIGR00958 3a01208 Conjugate Tr 100.0 7.9E-31 1.7E-35 268.1 10.4 195 77-284 478-703 (711)
288 cd03288 ABCC_SUR2 The SUR doma 100.0 1.2E-30 2.7E-35 236.0 10.4 192 75-283 17-243 (257)
289 KOG0055 Multidrug/pheromone ex 100.0 6.1E-31 1.3E-35 270.7 8.9 195 77-284 350-577 (1228)
290 cd03228 ABCC_MRP_Like The MRP 100.0 1.1E-30 2.4E-35 222.2 9.0 144 78-266 1-160 (171)
291 PRK10790 putative multidrug tr 100.0 1.1E-30 2.3E-35 262.3 10.4 191 77-283 340-563 (592)
292 PRK10636 putative ABC transpor 100.0 2.4E-30 5.3E-35 261.2 12.8 192 77-281 1-234 (638)
293 PRK11288 araG L-arabinose tran 100.0 4.4E-31 9.5E-36 260.2 7.2 197 76-283 256-485 (501)
294 TIGR03375 type_I_sec_LssB type 100.0 1.1E-30 2.4E-35 266.6 9.9 194 77-284 463-689 (694)
295 PRK10938 putative molybdenum t 100.0 1.2E-30 2.5E-35 256.6 9.7 185 75-266 258-467 (490)
296 PLN03211 ABC transporter G-25; 100.0 2.3E-30 4.9E-35 261.5 11.6 194 80-283 71-296 (659)
297 TIGR01193 bacteriocin_ABC ABC- 100.0 1.3E-30 2.8E-35 266.7 9.9 192 77-283 473-697 (708)
298 cd03217 ABC_FeS_Assembly ABC-t 100.0 1E-30 2.3E-35 227.9 7.8 166 78-282 1-192 (200)
299 TIGR02868 CydC thiol reductant 100.0 2.5E-30 5.5E-35 256.4 10.8 170 77-261 334-529 (529)
300 PRK11160 cysteine/glutathione 100.0 1.3E-30 2.8E-35 260.7 8.7 193 77-283 338-562 (574)
301 KOG0057 Mitochondrial Fe/S clu 100.0 3.9E-30 8.5E-35 244.8 11.1 191 77-283 351-574 (591)
302 cd03214 ABC_Iron-Siderophores_ 100.0 7.1E-31 1.5E-35 225.3 5.2 153 79-266 1-163 (180)
303 PRK13657 cyclic beta-1,2-gluca 100.0 3.1E-30 6.7E-35 258.8 10.5 191 77-283 334-558 (588)
304 TIGR02203 MsbA_lipidA lipid A 100.0 3E-30 6.6E-35 258.0 10.2 194 77-283 330-556 (571)
305 PRK15439 autoinducer 2 ABC tra 100.0 2.2E-30 4.7E-35 255.7 8.9 195 75-282 266-491 (510)
306 PRK13409 putative ATPase RIL; 100.0 4E-30 8.7E-35 256.7 10.8 183 75-277 338-536 (590)
307 COG1132 MdlB ABC-type multidru 100.0 6.1E-31 1.3E-35 262.9 4.4 192 77-284 328-553 (567)
308 PRK10535 macrolide transporter 100.0 4.2E-30 9E-35 260.0 10.5 202 76-282 3-231 (648)
309 COG4987 CydC ABC-type transpor 100.0 2.1E-30 4.5E-35 246.4 7.5 193 77-283 336-561 (573)
310 TIGR03771 anch_rpt_ABC anchore 100.0 5.3E-30 1.1E-34 227.2 9.1 178 102-282 1-200 (223)
311 cd03290 ABCC_SUR1_N The SUR do 100.0 1.1E-29 2.3E-34 224.3 10.9 171 79-265 2-206 (218)
312 PRK10982 galactose/methyl gala 100.0 4.3E-30 9.3E-35 252.6 9.0 194 75-278 248-475 (491)
313 TIGR02204 MsbA_rel ABC transpo 100.0 6.9E-30 1.5E-34 255.7 9.7 194 77-283 337-563 (576)
314 cd03216 ABC_Carb_Monos_I This 100.0 1.3E-29 2.8E-34 214.1 9.1 140 78-266 1-147 (163)
315 PLN03073 ABC transporter F fam 100.0 3.9E-29 8.4E-34 254.1 14.3 190 75-280 506-711 (718)
316 COG1101 PhnK ABC-type uncharac 100.0 4.7E-30 1E-34 219.1 6.2 195 77-274 1-229 (263)
317 TIGR01192 chvA glucan exporter 100.0 1.7E-29 3.7E-34 253.2 10.6 191 77-283 334-558 (585)
318 COG0488 Uup ATPase components 100.0 5.4E-29 1.2E-33 243.7 13.2 180 75-266 1-215 (530)
319 cd03291 ABCC_CFTR1 The CFTR su 100.0 5.6E-29 1.2E-33 227.7 12.4 185 74-282 36-246 (282)
320 TIGR01842 type_I_sec_PrtD type 100.0 7.4E-30 1.6E-34 253.9 7.0 192 77-282 316-541 (544)
321 COG4107 PhnK ABC-type phosphon 100.0 4.2E-29 9.1E-34 206.9 10.1 198 75-283 4-241 (258)
322 TIGR01846 type_I_sec_HlyB type 100.0 2.1E-29 4.5E-34 257.3 9.9 194 77-284 455-681 (694)
323 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 5.4E-29 1.2E-33 206.1 9.9 128 78-266 1-132 (144)
324 PRK10789 putative multidrug tr 100.0 3E-29 6.5E-34 250.7 9.9 193 77-283 313-538 (569)
325 cd03237 ABC_RNaseL_inhibitor_d 100.0 7E-29 1.5E-33 223.1 11.2 158 96-266 9-181 (246)
326 PRK15177 Vi polysaccharide exp 100.0 2.6E-29 5.7E-34 221.2 8.1 174 96-282 2-191 (213)
327 COG4136 ABC-type uncharacteriz 100.0 2E-29 4.2E-34 204.2 6.2 182 77-265 2-199 (213)
328 TIGR02857 CydD thiol reductant 100.0 6.8E-29 1.5E-33 246.2 11.1 175 77-265 320-521 (529)
329 PLN03130 ABC transporter C fam 100.0 5.6E-29 1.2E-33 271.4 10.0 192 77-283 1237-1461(1622)
330 PLN03232 ABC transporter C fam 100.0 4.7E-29 1E-33 271.4 9.3 192 77-283 1234-1458(1495)
331 TIGR00956 3a01205 Pleiotropic 100.0 3.3E-29 7.1E-34 270.5 7.7 211 76-288 758-1001(1394)
332 TIGR01187 potA spermidine/putr 100.0 4.5E-29 9.8E-34 233.0 7.6 167 112-283 1-190 (325)
333 PRK10522 multidrug transporter 100.0 1.2E-28 2.7E-33 245.3 9.2 180 77-275 322-530 (547)
334 COG4133 CcmA ABC-type transpor 100.0 1.9E-28 4.1E-33 205.4 8.4 176 77-264 2-193 (209)
335 COG0396 sufC Cysteine desulfur 100.0 6.6E-28 1.4E-32 208.1 12.0 202 75-284 1-234 (251)
336 PTZ00243 ABC transporter; Prov 99.9 2.8E-28 6.1E-33 265.4 10.9 192 77-283 1308-1533(1560)
337 TIGR00954 3a01203 Peroxysomal 99.9 4.3E-28 9.4E-33 245.6 11.2 178 76-266 450-644 (659)
338 TIGR00957 MRP_assoc_pro multi 99.9 3.2E-28 6.8E-33 265.3 10.9 192 77-283 1284-1508(1522)
339 cd03236 ABC_RNaseL_inhibitor_d 99.9 2.6E-28 5.6E-33 220.4 7.8 180 81-275 4-219 (255)
340 PTZ00265 multidrug resistance 99.9 3.8E-28 8.2E-33 262.7 10.4 194 77-283 1165-1452(1466)
341 cd03222 ABC_RNaseL_inhibitor T 99.9 8.6E-28 1.9E-32 205.2 9.9 126 81-266 4-137 (177)
342 KOG0055 Multidrug/pheromone ex 99.9 7.3E-28 1.6E-32 248.1 9.6 194 77-283 987-1213(1228)
343 PTZ00265 multidrug resistance 99.9 7.1E-28 1.5E-32 260.6 9.6 183 77-266 382-645 (1466)
344 KOG0059 Lipid exporter ABCA1 a 99.9 1.9E-27 4.1E-32 247.4 12.4 202 75-284 562-788 (885)
345 TIGR01194 cyc_pep_trnsptr cycl 99.9 8.9E-28 1.9E-32 239.4 8.8 175 77-266 337-536 (555)
346 TIGR00955 3a01204 The Eye Pigm 99.9 2.4E-27 5.1E-32 238.8 11.2 183 96-283 40-256 (617)
347 TIGR01271 CFTR_protein cystic 99.9 2.4E-27 5.2E-32 257.7 11.8 191 77-283 1217-1440(1490)
348 KOG0056 Heavy metal exporter H 99.9 7.1E-28 1.5E-32 226.2 6.5 194 77-284 537-762 (790)
349 COG4618 ArpD ABC-type protease 99.9 4.9E-27 1.1E-31 221.9 10.1 196 77-286 334-563 (580)
350 COG4778 PhnL ABC-type phosphon 99.9 7.2E-27 1.6E-31 192.9 8.4 185 77-266 4-217 (235)
351 PLN03130 ABC transporter C fam 99.9 1.1E-26 2.3E-31 253.6 12.2 188 77-283 614-828 (1622)
352 PLN03140 ABC transporter G fam 99.9 4.2E-27 9.1E-32 253.9 8.1 208 77-288 867-1118(1470)
353 TIGR00957 MRP_assoc_pro multi 99.9 1.3E-26 2.7E-31 252.8 11.1 187 77-283 636-850 (1522)
354 PLN03232 ABC transporter C fam 99.9 1.7E-26 3.7E-31 251.4 10.5 189 77-283 614-828 (1495)
355 PLN03073 ABC transporter F fam 99.9 5.9E-27 1.3E-31 238.2 6.4 199 74-280 174-428 (718)
356 cd00267 ABC_ATPase ABC (ATP-bi 99.9 3.9E-26 8.3E-31 191.5 9.5 129 80-266 2-145 (157)
357 PRK13409 putative ATPase RIL; 99.9 1.8E-26 3.8E-31 230.6 8.8 170 81-266 77-276 (590)
358 cd03238 ABC_UvrA The excision 99.9 2.8E-26 6.1E-31 195.7 8.7 130 95-265 9-153 (176)
359 PLN03140 ABC transporter G fam 99.9 6.7E-26 1.5E-30 244.6 13.5 185 94-283 178-427 (1470)
360 TIGR00956 3a01205 Pleiotropic 99.9 8.9E-26 1.9E-30 243.9 12.4 188 94-283 74-300 (1394)
361 TIGR01271 CFTR_protein cystic 99.9 4.6E-26 1E-30 247.8 9.0 173 96-283 441-636 (1490)
362 KOG0061 Transporter, ABC super 99.9 4.9E-24 1.1E-28 213.6 14.5 204 78-283 26-260 (613)
363 PF00005 ABC_tran: ABC transpo 99.9 1.3E-25 2.8E-30 183.6 1.9 122 97-236 1-136 (137)
364 PTZ00243 ABC transporter; Prov 99.9 6E-25 1.3E-29 239.5 7.4 177 96-283 675-870 (1560)
365 KOG0054 Multidrug resistance-a 99.9 6.1E-24 1.3E-28 223.5 11.0 191 74-283 515-731 (1381)
366 cd03270 ABC_UvrA_I The excisio 99.9 9.7E-24 2.1E-28 187.4 9.0 167 96-265 10-203 (226)
367 COG5265 ATM1 ABC-type transpor 99.9 1.5E-24 3.3E-29 201.0 3.3 194 77-284 262-487 (497)
368 KOG0927 Predicted transporter 99.9 2.6E-23 5.6E-28 197.9 11.7 179 74-266 386-571 (614)
369 KOG0054 Multidrug resistance-a 99.9 5.3E-24 1.2E-28 223.9 7.0 193 77-284 1138-1363(1381)
370 COG4138 BtuD ABC-type cobalami 99.9 1.8E-23 3.8E-28 173.6 7.2 190 76-284 2-222 (248)
371 cd03278 ABC_SMC_barmotin Barmo 99.9 1.8E-22 4E-27 175.5 10.2 145 96-265 11-180 (197)
372 COG4615 PvdE ABC-type sideroph 99.9 1.6E-21 3.4E-26 179.7 9.5 178 77-274 322-528 (546)
373 KOG0066 eIF2-interacting prote 99.8 2.2E-21 4.7E-26 180.7 7.2 180 70-266 579-766 (807)
374 cd03273 ABC_SMC2_euk Eukaryoti 99.8 1.5E-20 3.3E-25 169.5 9.3 176 78-266 6-234 (251)
375 cd03271 ABC_UvrA_II The excisi 99.8 2.4E-20 5.1E-25 168.4 7.0 163 96-266 10-237 (261)
376 cd02025 PanK Pantothenate kina 99.8 3.7E-19 8E-24 157.3 14.1 187 109-311 1-210 (220)
377 cd03272 ABC_SMC3_euk Eukaryoti 99.8 3.8E-20 8.1E-25 165.9 7.4 172 78-262 4-222 (243)
378 COG0572 Udk Uridine kinase [Nu 99.8 8.6E-19 1.9E-23 152.1 14.3 183 106-312 7-191 (218)
379 COG4178 ABC-type uncharacteriz 99.8 4.3E-19 9.4E-24 173.9 13.3 174 75-264 390-577 (604)
380 COG1245 Predicted ATPase, RNas 99.8 9.4E-20 2E-24 170.7 7.8 172 75-266 340-521 (591)
381 KOG0062 ATPase component of AB 99.8 3.1E-19 6.7E-24 169.3 10.9 190 77-283 80-285 (582)
382 COG4170 SapD ABC-type antimicr 99.8 1.7E-19 3.8E-24 154.0 8.1 209 75-284 1-249 (330)
383 KOG0927 Predicted transporter 99.8 2.5E-19 5.5E-24 170.8 9.6 192 77-287 75-313 (614)
384 KOG0065 Pleiotropic drug resis 99.8 2E-19 4.4E-24 186.2 9.4 210 77-289 787-1030(1391)
385 cd03279 ABC_sbcCD SbcCD and ot 99.8 2.2E-19 4.8E-24 158.0 7.7 165 77-266 5-198 (213)
386 TIGR00554 panK_bact pantothena 99.8 1.8E-18 3.9E-23 158.1 13.8 192 105-312 60-279 (290)
387 PTZ00301 uridine kinase; Provi 99.8 4.4E-18 9.4E-23 149.1 15.3 185 108-312 4-190 (210)
388 cd03274 ABC_SMC4_euk Eukaryoti 99.8 2E-20 4.4E-25 164.5 0.6 166 78-264 6-193 (212)
389 COG1129 MglA ABC-type sugar tr 99.8 6E-19 1.3E-23 169.8 9.9 190 74-274 260-481 (500)
390 KOG0060 Long-chain acyl-CoA tr 99.8 2.1E-18 4.6E-23 165.7 8.8 183 76-266 432-632 (659)
391 PRK09270 nucleoside triphospha 99.8 3.8E-17 8.1E-22 145.4 16.3 191 105-312 31-222 (229)
392 PRK00349 uvrA excinuclease ABC 99.7 7.9E-18 1.7E-22 174.7 11.9 93 191-283 810-927 (943)
393 cd02023 UMPK Uridine monophosp 99.7 5.9E-17 1.3E-21 140.8 15.5 178 109-312 1-182 (198)
394 cd03240 ABC_Rad50 The catalyti 99.7 3.4E-18 7.4E-23 149.5 7.7 143 102-265 18-187 (204)
395 KOG0062 ATPase component of AB 99.7 6.3E-18 1.4E-22 160.5 8.8 179 74-266 359-544 (582)
396 KOG2355 Predicted ABC-type tra 99.7 1.5E-17 3.3E-22 141.7 10.1 185 75-266 11-213 (291)
397 TIGR00235 udk uridine kinase. 99.7 5.9E-17 1.3E-21 142.0 13.7 183 105-311 4-188 (207)
398 PF00485 PRK: Phosphoribulokin 99.7 5.1E-18 1.1E-22 147.2 6.2 185 109-312 1-189 (194)
399 COG3845 ABC-type uncharacteriz 99.7 4.1E-17 8.9E-22 154.8 11.9 201 74-280 254-489 (501)
400 cd03276 ABC_SMC6_euk Eukaryoti 99.7 5.1E-17 1.1E-21 141.5 11.2 148 96-266 11-181 (198)
401 KOG2702 Predicted panthothenat 99.7 1.2E-16 2.6E-21 138.0 10.9 201 105-311 117-321 (323)
402 cd03275 ABC_SMC1_euk Eukaryoti 99.7 3.2E-17 6.8E-22 147.6 7.7 169 78-265 4-223 (247)
403 PRK05480 uridine/cytidine kina 99.7 6.4E-16 1.4E-20 135.5 15.8 181 105-311 4-188 (209)
404 PRK05439 pantothenate kinase; 99.7 3.1E-16 6.6E-21 144.4 13.9 192 105-312 84-299 (311)
405 PRK00635 excinuclease ABC subu 99.7 5.5E-17 1.2E-21 175.5 9.6 91 193-283 791-906 (1809)
406 TIGR00630 uvra excinuclease AB 99.7 1.3E-16 2.7E-21 165.5 10.3 91 191-281 808-923 (924)
407 PLN02318 phosphoribulokinase/u 99.7 8.5E-16 1.9E-20 150.2 13.5 173 106-310 64-238 (656)
408 COG2401 ABC-type ATPase fused 99.6 4.7E-16 1E-20 144.6 8.5 160 95-266 397-573 (593)
409 KOG0064 Peroxisomal long-chain 99.6 2E-16 4.3E-21 150.6 6.0 166 78-266 482-674 (728)
410 PLN02348 phosphoribulokinase 99.6 3.3E-14 7.2E-19 133.7 14.6 190 107-311 49-244 (395)
411 KOG0065 Pleiotropic drug resis 99.6 1.6E-14 3.5E-19 150.4 12.7 187 95-283 129-351 (1391)
412 cd02029 PRK_like Phosphoribulo 99.6 1.8E-13 3.8E-18 122.7 16.3 184 109-312 1-203 (277)
413 COG1245 Predicted ATPase, RNas 99.6 2.1E-15 4.5E-20 141.7 3.9 177 82-266 79-278 (591)
414 cd02026 PRK Phosphoribulokinas 99.5 2.6E-13 5.7E-18 123.7 16.1 175 109-311 1-177 (273)
415 COG1072 CoaA Panthothenate kin 99.5 2.4E-13 5.2E-18 121.2 12.7 185 104-304 79-264 (283)
416 cd02028 UMPK_like Uridine mono 99.5 3.1E-13 6.8E-18 115.8 11.8 176 109-310 1-179 (179)
417 PRK07429 phosphoribulokinase; 99.5 1E-12 2.3E-17 122.4 15.9 174 106-312 7-187 (327)
418 cd03283 ABC_MutS-like MutS-lik 99.5 7.2E-14 1.6E-18 121.7 7.4 130 96-266 16-153 (199)
419 KOG0066 eIF2-interacting prote 99.5 7E-14 1.5E-18 131.0 6.5 174 77-266 264-474 (807)
420 cd03280 ABC_MutS2 MutS2 homolo 99.5 3.8E-14 8.3E-19 123.5 4.4 126 96-264 16-154 (200)
421 PRK00635 excinuclease ABC subu 99.4 2.5E-13 5.5E-18 147.4 10.4 93 191-283 1679-1796(1809)
422 cd03282 ABC_MSH4_euk MutS4 hom 99.4 1.4E-13 3.1E-18 120.2 4.0 129 96-266 18-156 (204)
423 PRK15453 phosphoribulokinase; 99.4 9.7E-12 2.1E-16 112.4 15.5 185 106-311 4-208 (290)
424 cd03277 ABC_SMC5_euk Eukaryoti 99.4 1.1E-12 2.3E-17 115.6 8.8 64 203-266 121-197 (213)
425 COG0178 UvrA Excinuclease ATPa 99.4 1.3E-12 2.8E-17 130.4 10.0 82 202-283 816-919 (935)
426 cd03227 ABC_Class2 ABC-type Cl 99.4 1.3E-12 2.7E-17 110.2 7.2 122 100-266 14-146 (162)
427 cd03243 ABC_MutS_homologs The 99.3 9.2E-13 2E-17 115.0 5.5 127 99-266 21-156 (202)
428 cd03239 ABC_SMC_head The struc 99.3 4.6E-12 1E-16 108.4 9.4 57 209-265 95-162 (178)
429 KOG0063 RNAse L inhibitor, ABC 99.3 1.1E-12 2.3E-17 122.8 5.6 155 96-265 351-521 (592)
430 cd00820 PEPCK_HprK Phosphoenol 99.3 2.4E-12 5.1E-17 100.3 4.8 67 95-175 3-77 (107)
431 cd03285 ABC_MSH2_euk MutS2 hom 99.3 1.1E-12 2.5E-17 116.1 2.9 125 96-263 19-155 (222)
432 cd02024 NRK1 Nicotinamide ribo 99.2 6.9E-11 1.5E-15 101.7 11.3 139 109-272 1-152 (187)
433 PRK06696 uridine kinase; Valid 99.2 9.9E-11 2.2E-15 103.7 11.0 183 106-312 21-211 (223)
434 cd03281 ABC_MSH5_euk MutS5 hom 99.2 9.5E-11 2.1E-15 103.2 10.7 129 96-266 18-159 (213)
435 cd03241 ABC_RecN RecN ATPase i 99.2 2.2E-11 4.8E-16 111.4 6.6 58 208-265 170-237 (276)
436 cd03287 ABC_MSH3_euk MutS3 hom 99.1 3.9E-10 8.4E-15 99.8 10.8 47 96-145 20-67 (222)
437 TIGR01069 mutS2 MutS2 family p 99.1 1.2E-10 2.5E-15 119.9 5.4 126 100-265 314-449 (771)
438 PRK07667 uridine kinase; Provi 99.1 2.1E-09 4.6E-14 93.1 12.1 174 106-309 16-193 (193)
439 PLN02796 D-glycerate 3-kinase 99.1 1.9E-09 4.2E-14 100.3 12.5 132 96-241 81-233 (347)
440 cd03284 ABC_MutS1 MutS1 homolo 99.1 6.8E-10 1.5E-14 97.9 8.8 35 96-131 20-54 (216)
441 TIGR03238 dnd_assoc_3 dnd syst 99.0 1.3E-10 2.9E-15 111.6 3.0 47 96-147 21-68 (504)
442 TIGR02858 spore_III_AA stage I 99.0 4.1E-10 8.9E-15 102.4 5.5 37 108-147 112-148 (270)
443 cd03242 ABC_RecF RecF is a rec 99.0 2.3E-09 5E-14 97.8 9.6 59 207-265 182-252 (270)
444 smart00534 MUTSac ATPase domai 99.0 1.4E-10 3.1E-15 99.8 0.6 60 204-264 57-125 (185)
445 PRK06995 flhF flagellar biosyn 98.9 1.2E-09 2.5E-14 106.4 6.7 72 96-184 245-316 (484)
446 cd01128 rho_factor Transcripti 98.9 5.9E-09 1.3E-13 93.8 8.9 57 208-266 129-199 (249)
447 cd01130 VirB11-like_ATPase Typ 98.9 3.4E-09 7.3E-14 91.3 6.3 47 97-146 15-61 (186)
448 PF02463 SMC_N: RecF/RecN/SMC 98.9 1.8E-09 4E-14 95.1 4.5 59 208-266 136-204 (220)
449 PRK08233 hypothetical protein; 98.9 6.1E-08 1.3E-12 82.5 13.6 79 228-311 79-161 (182)
450 PLN03046 D-glycerate 3-kinase; 98.8 5.9E-08 1.3E-12 92.2 14.0 175 106-295 211-426 (460)
451 KOG0063 RNAse L inhibitor, ABC 98.8 1.9E-09 4E-14 101.4 2.3 159 104-266 97-278 (592)
452 cd03286 ABC_MSH6_euk MutS6 hom 98.8 2E-08 4.4E-13 88.6 7.7 36 96-131 19-54 (218)
453 PRK06002 fliI flagellum-specif 98.8 1.4E-08 2.9E-13 97.9 7.0 79 75-160 137-230 (450)
454 PRK06547 hypothetical protein; 98.8 1.1E-07 2.4E-12 80.9 11.7 151 105-309 13-171 (172)
455 TIGR02788 VirB11 P-type DNA tr 98.7 4.3E-08 9.4E-13 91.1 9.6 42 100-144 137-178 (308)
456 PRK00409 recombination and DNA 98.7 5E-09 1.1E-13 108.2 2.1 126 100-266 319-455 (782)
457 PRK00349 uvrA excinuclease ABC 98.7 8.2E-09 1.8E-13 108.0 3.3 90 194-283 472-585 (943)
458 COG4240 Predicted kinase [Gene 98.7 2.8E-07 6.1E-12 80.3 11.2 126 103-241 46-177 (300)
459 PRK07196 fliI flagellum-specif 98.6 2.1E-08 4.6E-13 96.4 4.2 81 94-180 143-240 (434)
460 PRK08533 flagellar accessory p 98.6 1.5E-07 3.3E-12 83.8 8.2 42 78-132 8-50 (230)
461 TIGR00630 uvra excinuclease AB 98.6 3.4E-08 7.4E-13 103.2 4.3 81 202-282 481-582 (924)
462 PTZ00132 GTP-binding nuclear p 98.5 1.5E-08 3.3E-13 88.9 0.4 46 207-252 149-201 (215)
463 PRK06315 type III secretion sy 98.5 2.9E-07 6.3E-12 88.9 8.9 103 94-200 152-276 (442)
464 PRK13695 putative NTPase; Prov 98.5 8.9E-08 1.9E-12 81.4 3.3 128 109-263 2-138 (174)
465 PRK14721 flhF flagellar biosyn 98.5 4.9E-07 1.1E-11 86.9 8.3 96 104-218 188-285 (420)
466 PRK13477 bifunctional pantoate 98.5 3.8E-07 8.3E-12 89.7 7.7 45 83-132 265-309 (512)
467 PRK09862 putative ATP-dependen 98.4 3.1E-07 6.7E-12 90.2 6.1 61 80-147 187-247 (506)
468 KOG4203 Armadillo/beta-Catenin 98.4 9.1E-07 2E-11 86.4 9.2 191 105-312 42-237 (473)
469 PF13555 AAA_29: P-loop contai 98.4 3.9E-07 8.4E-12 63.8 4.5 36 97-132 12-48 (62)
470 PRK07594 type III secretion sy 98.4 1.8E-07 3.9E-12 90.1 3.8 63 76-146 128-191 (433)
471 PRK07721 fliI flagellum-specif 98.4 2.6E-07 5.5E-12 89.5 4.2 47 96-146 148-194 (438)
472 cd01136 ATPase_flagellum-secre 98.3 3.5E-07 7.6E-12 85.2 4.0 46 96-145 59-104 (326)
473 TIGR00767 rho transcription te 98.3 8.1E-07 1.8E-11 84.4 6.5 53 77-132 130-193 (415)
474 PRK14723 flhF flagellar biosyn 98.3 1.2E-06 2.6E-11 89.5 7.4 87 96-199 174-262 (767)
475 PRK08149 ATP synthase SpaL; Va 98.3 5.2E-07 1.1E-11 86.8 4.2 49 95-147 140-191 (428)
476 PRK09825 idnK D-gluconate kina 98.3 9.6E-07 2.1E-11 75.4 4.8 27 106-132 2-28 (176)
477 PRK09099 type III secretion sy 98.3 7.6E-07 1.6E-11 86.0 4.4 49 94-146 151-199 (441)
478 PRK05922 type III secretion sy 98.2 3.7E-07 8.1E-12 87.9 1.8 48 94-145 145-192 (434)
479 cd02020 CMPK Cytidine monophos 98.2 1.1E-05 2.4E-10 65.9 10.1 61 251-311 83-147 (147)
480 KOG2878 Predicted kinase [Gene 98.2 2.3E-05 5E-10 67.2 12.1 176 108-300 32-255 (282)
481 TIGR02546 III_secr_ATP type II 98.2 8.3E-07 1.8E-11 85.7 3.8 47 95-145 134-180 (422)
482 PRK01889 GTPase RsgA; Reviewed 98.2 1.6E-06 3.5E-11 82.1 5.1 61 97-160 185-250 (356)
483 TIGR01026 fliI_yscN ATPase Fli 98.2 1.1E-06 2.3E-11 85.3 3.6 47 95-145 152-198 (440)
484 PRK00300 gmk guanylate kinase; 98.2 1.8E-06 3.9E-11 75.1 4.4 28 105-132 3-30 (205)
485 TIGR03497 FliI_clade2 flagella 98.2 1.6E-06 3.5E-11 83.4 4.3 48 95-146 126-173 (413)
486 TIGR00152 dephospho-CoA kinase 98.2 9.2E-06 2E-10 69.9 8.5 58 247-312 120-177 (188)
487 PRK10078 ribose 1,5-bisphospho 98.2 1.3E-06 2.9E-11 75.1 3.3 26 107-132 2-27 (186)
488 PRK06793 fliI flagellum-specif 98.1 2.2E-06 4.7E-11 82.6 4.6 63 77-146 130-192 (432)
489 PRK14722 flhF flagellar biosyn 98.1 4.2E-06 9E-11 79.4 6.2 71 96-183 126-196 (374)
490 PRK10416 signal recognition pa 98.1 3E-06 6.5E-11 79.0 5.0 40 105-147 112-151 (318)
491 TIGR03498 FliI_clade3 flagella 98.1 1.6E-06 3.5E-11 83.4 3.2 62 78-146 115-176 (418)
492 PRK08118 topology modulation p 98.1 9.1E-05 2E-09 62.7 13.4 24 109-132 3-26 (167)
493 TIGR03496 FliI_clade1 flagella 98.1 3E-06 6.4E-11 81.5 4.7 63 77-146 111-173 (411)
494 PRK07960 fliI flagellum-specif 98.1 2E-06 4.3E-11 83.1 3.2 50 94-147 163-215 (455)
495 PLN03210 Resistant to P. syrin 98.1 1.1E-05 2.5E-10 87.4 9.3 44 100-145 200-243 (1153)
496 COG0178 UvrA Excinuclease ATPa 98.1 2.6E-06 5.6E-11 86.1 3.9 84 201-284 474-578 (935)
497 PRK05688 fliI flagellum-specif 98.1 2.4E-06 5.2E-11 82.6 3.5 38 94-132 156-193 (451)
498 cd01131 PilT Pilus retraction 98.1 4.4E-05 9.5E-10 66.4 11.1 24 109-132 3-26 (198)
499 PRK08472 fliI flagellum-specif 98.1 3.3E-06 7.2E-11 81.4 4.2 47 96-146 147-193 (434)
500 PRK08972 fliI flagellum-specif 98.1 2.6E-06 5.6E-11 82.0 3.4 38 94-132 150-187 (444)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-46 Score=318.49 Aligned_cols=200 Identities=18% Similarity=0.234 Sum_probs=173.6
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
+||+++||+|+||+.. +|++||++|.+||+++|+||||||||||||||+++.. |++|+|.++|...
T Consensus 1 ~mi~i~~l~K~fg~~~----VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~---~~~G~I~i~g~~~~~~~~~~ 73 (240)
T COG1126 1 MMIEIKNLSKSFGDKE----VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE---PDSGSITVDGEDVGDKKDIL 73 (240)
T ss_pred CeEEEEeeeEEeCCeE----EecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC---CCCceEEECCEeccchhhHH
Confidence 3799999999999988 9999999999999999999999999999999999999 9999999999532
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHH-HhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhc
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al 223 (313)
++.+|+|||+ |++++ ++|+.+|+.+.. ...+.++.+..+.+.++|+++| ...+.++.+|||||||||+||+||
T Consensus 74 ~~R~~vGmVFQ~-fnLFP-HlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARAL 151 (240)
T COG1126 74 KLRRKVGMVFQQ-FNLFP-HLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARAL 151 (240)
T ss_pred HHHHhcCeeccc-ccccc-cchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHH
Confidence 3469999999 44443 699999999865 3566777777888999999999 456778889999999999999999
Q ss_pred ccCccEEEEcCcccccCh----hhHHHHHHhhcCe---EEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEK---WFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE----~~~~~l~~l~~~~---i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
+.+++++++|+|+.-||+ ++++.+.++.+++ ++|||++..+.. |++ |++++.|+|+++...
T Consensus 152 aM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 152 AMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred cCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 999999999999999999 5566666666653 699999999987 776 889999988887653
No 2
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-44 Score=314.61 Aligned_cols=208 Identities=14% Similarity=0.149 Sum_probs=179.6
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
||+++||+|.|+++. +++|+||+|++||+++++|||||||||+||||.++++ |++|+|.++|++.
T Consensus 1 MI~~~nvsk~y~~~~----av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie---pt~G~I~i~g~~i~~~d~~~L 73 (309)
T COG1125 1 MIEFENVSKRYGNKK----AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE---PTSGEILIDGEDISDLDPVEL 73 (309)
T ss_pred CceeeeeehhcCCce----eeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC---CCCceEEECCeecccCCHHHH
Confidence 589999999999887 9999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc----CCCccCCCCCccCCCcchhhhhcc
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN----QGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~----~~~~~~~~LSgGekqRv~la~al~ 224 (313)
++.+||+-|..-.++ ++||.+|+.....+.++++....+++.++|+.++. ..++++.+|||||+|||.+++|++
T Consensus 74 Rr~IGYviQqigLFP--h~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALA 151 (309)
T COG1125 74 RRKIGYVIQQIGLFP--HLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALA 151 (309)
T ss_pred HHhhhhhhhhcccCC--CccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHh
Confidence 356999999855444 59999999999888888877778889999999984 457888899999999999999999
Q ss_pred cCccEEEEcCcccccChhhHH----HHHHhh----cCeEEEEcChHHHHH---HHH----hhhhccCChhHHHHHHHHhc
Q 021380 225 LQHKVVIVDGNYLFLDGGVWK----DVSSMF----DEKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWRIEYN 289 (313)
Q Consensus 225 ~~a~~li~d~~~llLDE~~~~----~l~~l~----~~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~~~~~~ 289 (313)
.++.++++|+|+--||+-.+. ++.++. .++||||||++++.+ |++ |+++..+.|++++.+
T Consensus 152 adP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~----- 226 (309)
T COG1125 152 ADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN----- 226 (309)
T ss_pred cCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC-----
Confidence 999999999999999993333 333332 235799999999998 665 999999999998775
Q ss_pred CCchHHHHHhh
Q 021380 290 DRPNAELIMKS 300 (313)
Q Consensus 290 ~~~~~~~i~~~ 300 (313)
|..+|+..+
T Consensus 227 --Pan~FV~~f 235 (309)
T COG1125 227 --PANDFVEDF 235 (309)
T ss_pred --ccHHHHHHH
Confidence 677776654
No 3
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-44 Score=332.22 Aligned_cols=217 Identities=15% Similarity=0.187 Sum_probs=181.4
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
++.|+++||+|.||+.. +++|+||+|++||+++|+||||||||||||+|+|+.. |++|+|.++|++.
T Consensus 3 ~~~l~i~~v~k~yg~~~----av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~---p~~G~I~l~G~~i~~lpp~ 75 (352)
T COG3842 3 KPALEIRNVSKSFGDFT----AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ---PSSGEILLDGEDITDVPPE 75 (352)
T ss_pred CceEEEEeeeeecCCee----EEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence 46899999999999877 9999999999999999999999999999999999999 9999999999762
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC-CccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhccc
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
++.+++|||+.. ++ ++|||.+|++|++...+... ....+++.++|+.++ ...++++.+|||||+|||+||+||+.
T Consensus 76 kR~ig~VFQ~YA-LF-PHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~ 153 (352)
T COG3842 76 KRPIGMVFQSYA-LF-PHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVP 153 (352)
T ss_pred hcccceeecCcc-cC-CCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhc
Confidence 467999999944 33 36999999999988544333 345678899999988 45678888999999999999999999
Q ss_pred CccEEEEcCcccccChhhHHHHHH----hhcC----eEEEEcChHHHHH---HHH----hhhhccCChhHHHHHHHHhcC
Q 021380 226 QHKVVIVDGNYLFLDGGVWKDVSS----MFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWRIEYND 290 (313)
Q Consensus 226 ~a~~li~d~~~llLDE~~~~~l~~----l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~~~~~~~ 290 (313)
.+++|++|+|+.-||.++.+.++. +... .||||||.++++. |++ |++...|+|.++..+
T Consensus 154 ~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~------ 227 (352)
T COG3842 154 EPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER------ 227 (352)
T ss_pred CcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC------
Confidence 999999999999999955554444 3332 4799999999998 766 899999999998654
Q ss_pred CchHHHHHhhcCCCCEE
Q 021380 291 RPNAELIMKSKKNADLV 307 (313)
Q Consensus 291 ~~~~~~i~~~~~~aD~i 307 (313)
|...|+..+....+++
T Consensus 228 -P~~~fVA~FiG~~N~l 243 (352)
T COG3842 228 -PATRFVADFIGESNIF 243 (352)
T ss_pred -cchHHHHHHhCcceee
Confidence 7777776665555443
No 4
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-43 Score=309.48 Aligned_cols=182 Identities=15% Similarity=0.196 Sum_probs=159.2
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC---CCCeE
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---PPDVA 152 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~---~~~~i 152 (313)
.+++++++++.|++.. +|+||||+|.+||+++|+||||||||||||+|+|+.+ |++|+|.++|.. +...+
T Consensus 2 ~~l~i~~v~~~f~~~~----vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~---p~~G~V~~~g~~v~~p~~~~ 74 (248)
T COG1116 2 ALLEIEGVSKSFGGVE----VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK---PTSGEVLLDGRPVTGPGPDI 74 (248)
T ss_pred ceEEEEeeEEEeCceE----EeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCcccCCCCCCE
Confidence 4799999999999876 9999999999999999999999999999999999999 999999999975 34569
Q ss_pred EEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEE
Q 021380 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 153 ~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~l 230 (313)
+|+||+...+ +++||.+|+.++....+.+..+..+++.++|+.+|. ..++++.+|||||||||+||+|++..+++|
T Consensus 75 ~~vFQ~~~Ll--PW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lL 152 (248)
T COG1116 75 GYVFQEDALL--PWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLL 152 (248)
T ss_pred EEEeccCccc--chhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEE
Confidence 9999996533 489999999999888776666667789999999994 567888899999999999999999999999
Q ss_pred EEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 231 IVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 231 i~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
++|+|+--||+ .+.+.+.+++. .++|||||.+++..
T Consensus 153 LlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~ 196 (248)
T COG1116 153 LLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVY 196 (248)
T ss_pred EEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHh
Confidence 99999999999 34444444443 35799999999876
No 5
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4e-43 Score=323.50 Aligned_cols=201 Identities=16% Similarity=0.158 Sum_probs=175.6
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
|.+|+++||+|.||+.. +|+++||+|+.||+++|+||||||||||||+|+|+.+ |++|+|.++|.+.
T Consensus 1 M~~i~l~~v~K~yg~~~----~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~---~~~G~I~i~g~~vt~l~P~ 73 (338)
T COG3839 1 MAELELKNVRKSFGSFE----VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE---PTSGEILIDGRDVTDLPPE 73 (338)
T ss_pred CcEEEEeeeEEEcCCce----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence 56899999999999876 8999999999999999999999999999999999999 9999999999653
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcccC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~~ 226 (313)
.+.+++|||+...++ +|||++|+.|++...+.++....+++.++.+.++ ...++++.+|||||||||++++|++.+
T Consensus 74 ~R~iamVFQ~yALyP--hmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~ 151 (338)
T COG3839 74 KRGIAMVFQNYALYP--HMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRK 151 (338)
T ss_pred HCCEEEEeCCccccC--CCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcC
Confidence 357999999954333 6999999999999998888888889999999988 456888999999999999999999999
Q ss_pred ccEEEEcCcccccChhhHH----HHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 227 HKVVIVDGNYLFLDGGVWK----DVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 227 a~~li~d~~~llLDE~~~~----~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
++++++|+|+.-||..+.. ++.++.+ ..||||||..+++. |++ |++.+.|+|.++...
T Consensus 152 P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 152 PKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred CCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 9999999999999994443 4444332 25899999999988 655 899999999998653
No 6
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-42 Score=309.49 Aligned_cols=202 Identities=16% Similarity=0.176 Sum_probs=173.0
Q ss_pred eEEEccceeEcccc-ccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC--------
Q 021380 77 VVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (313)
Q Consensus 77 ~l~v~~ls~~y~~~-~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~-------- 147 (313)
||++++|+|.|... ...+.+|+||||+|++|+++||||.||||||||+|+|.++.+ |++|+|.++|.+
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~---PtsG~v~v~G~di~~l~~~~ 77 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER---PTSGSVFVDGQDLTALSEAE 77 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC---CCCceEEEcCEecccCChHH
Confidence 58999999999862 223459999999999999999999999999999999999999 999999999965
Q ss_pred ---CCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhh
Q 021380 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 148 ---~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~a 222 (313)
.++.||++||+. .+.. ..||++|++|++...+.+++...+++.++|+.+|. ..+.++.+|||||||||+||+|
T Consensus 78 Lr~~R~~IGMIFQhF-nLLs-srTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARA 155 (339)
T COG1135 78 LRQLRQKIGMIFQHF-NLLS-SRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARA 155 (339)
T ss_pred HHHHHhhccEEeccc-cccc-cchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHH
Confidence 235699999994 4443 47999999999999998888888899999999994 4567788999999999999999
Q ss_pred cccCccEEEEcCcccccChhhHHHHHHhhcC--------eEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE~~~~~l~~l~~~--------~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++.+|++|+.|+.+.-||+++.+.+.+++.. +++|||.|+.+.+ |++ |++++.|+..++..
T Consensus 156 La~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~ 231 (339)
T COG1135 156 LANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFA 231 (339)
T ss_pred HhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhc
Confidence 9999999999999999999544444444332 4699999999987 665 99999998888754
No 7
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.8e-42 Score=302.37 Aligned_cols=203 Identities=16% Similarity=0.153 Sum_probs=168.6
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----C
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----P 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-----~ 149 (313)
|++|+++|+++.|++.. +|+||||+|++|++++|+||||||||||+|+|+|+++ |.+|+|.+.|.+. .
T Consensus 2 ~~~i~v~nl~v~y~~~~----vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~---p~~G~i~~~g~~~~~~~~~ 74 (254)
T COG1121 2 MPMIEVENLTVSYGNRP----VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK---PSSGEIKIFGKPVRKRRKR 74 (254)
T ss_pred CcEEEEeeeEEEECCEe----eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCcceEEEccccccccccC
Confidence 56899999999999656 9999999999999999999999999999999999999 9999999988642 2
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHh----cCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~----~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al 223 (313)
.+||||||.........+||+|.+..+... .+.+.+.+.+.+.++|+.++ ...++.+.+|||||+|||.||+||
T Consensus 75 ~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL 154 (254)
T COG1121 75 LRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARAL 154 (254)
T ss_pred CeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHh
Confidence 469999996422222248999988876322 22334556788999999999 457889999999999999999999
Q ss_pred ccCccEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHHH---HHH---hhhhccCChhHHHHH
Q 021380 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL---KRHISTGKPPDVAKW 284 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rvi---gr~v~~G~~~e~~~~ 284 (313)
+.+|++|++|||+..+|. .+.+.|.++.++ +++||||++.+.. +++ +++++.|+++++...
T Consensus 155 ~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~~~~G~~~~~~~~ 228 (254)
T COG1121 155 AQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPPEEVLTE 228 (254)
T ss_pred ccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCeeEeccChhhccCH
Confidence 999999999999999999 455555555543 4699999999988 665 788889999988653
No 8
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.8e-41 Score=301.69 Aligned_cols=202 Identities=17% Similarity=0.163 Sum_probs=172.7
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
+|+++||+++|+++. +|+|+||+|++|++++|+||||||||||||+|+|+++ |.+|+|.++|.+.
T Consensus 2 ~L~~~~ls~~y~~~~----il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~---p~~G~V~l~g~~i~~~~~kel 74 (258)
T COG1120 2 MLEVENLSFGYGGKP----ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK---PKSGEVLLDGKDIASLSPKEL 74 (258)
T ss_pred eeEEEEEEEEECCee----EEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCCchhhcCHHHH
Confidence 689999999999888 9999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHh----cCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhh
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~----~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~a 222 (313)
.+.++|++|.... ...+||.|.+.++..- ++.+...|.+.+.+.|+.++ ...++.+.+|||||||||.||+|
T Consensus 75 Ak~ia~vpQ~~~~--~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArA 152 (258)
T COG1120 75 AKKLAYVPQSPSA--PFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARA 152 (258)
T ss_pred hhhEEEeccCCCC--CCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHH
Confidence 3579999999643 3358999999887542 22234456667888899988 45678899999999999999999
Q ss_pred cccCccEEEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccCChhHHHHHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWRIE 287 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~~~~ 287 (313)
++.++++|++|+|+..||. ++++.++++.++ +|+|.||++.+.+ +++ |++++.|.|.+++.....
T Consensus 153 LaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l 232 (258)
T COG1120 153 LAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENL 232 (258)
T ss_pred HhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCHHHH
Confidence 9999999999999999999 677777777733 5799999999998 555 899999999988754433
No 9
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-41 Score=302.56 Aligned_cols=208 Identities=18% Similarity=0.251 Sum_probs=175.1
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCC---C------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV---K------ 147 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~---~------ 147 (313)
+|.+++++|.|+... +++|||++|+.||.+||+||||||||||||+|+|++. |++|.|.++|. +
T Consensus 2 ~i~i~~~~~~~~~~~----a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~---p~~G~I~~~~~~l~D~~~~~~ 74 (345)
T COG1118 2 SIRINNVKKRFGAFG----ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET---PDAGRIRLNGRVLFDVSNLAV 74 (345)
T ss_pred ceeehhhhhhccccc----ccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC---CCCceEEECCEeccchhccch
Confidence 589999999999988 9999999999999999999999999999999999999 99999999997 3
Q ss_pred CCCeEEEEeccCCCCCcccCCcccCHHHHHHhcC-CC-CCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhc
Q 021380 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-AP-WTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 148 ~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~-~~-~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al 223 (313)
..++|||+||+.. ++ ++|||.+|++|+..... .+ ......++.++|+.+. ...++++.+|||||+|||++|+|+
T Consensus 75 ~~R~VGfvFQ~YA-LF-~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARAL 152 (345)
T COG1118 75 RDRKVGFVFQHYA-LF-PHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARAL 152 (345)
T ss_pred hhcceeEEEechh-hc-ccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHh
Confidence 2357999999954 33 36999999999986542 22 2445667888888877 446788889999999999999999
Q ss_pred ccCccEEEEcCcccccChhhHHHHHHhhc----C----eEEEEcChHHHHH---HHH----hhhhccCChhHHHHHHHHh
Q 021380 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD----E----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWRIEY 288 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE~~~~~l~~l~~----~----~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~~~~~ 288 (313)
+..+++|++|+|+--||..+...++..+. . .+|||||.+++.+ |++ |++...|++.|+...
T Consensus 153 A~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~---- 228 (345)
T COG1118 153 AVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDH---- 228 (345)
T ss_pred hcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcC----
Confidence 99999999999999999966666665543 2 4799999999998 666 999999999988554
Q ss_pred cCCchHHHHHhh
Q 021380 289 NDRPNAELIMKS 300 (313)
Q Consensus 289 ~~~~~~~~i~~~ 300 (313)
|+..|+.++
T Consensus 229 ---P~s~fV~~f 237 (345)
T COG1118 229 ---PASRFVARF 237 (345)
T ss_pred ---CCccceecc
Confidence 666555554
No 10
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.5e-41 Score=291.95 Aligned_cols=200 Identities=19% Similarity=0.264 Sum_probs=168.2
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
.++|++++|+++||++. +++||||+|++||+++|+||||||||||+|+|.|+++ |++|+|.++|.+.
T Consensus 6 ~~~I~vr~v~~~fG~~~----Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~---P~~GeI~i~G~~i~~ls~~ 78 (263)
T COG1127 6 EPLIEVRGVTKSFGDRV----ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR---PDKGEILIDGEDIPQLSEE 78 (263)
T ss_pred cceEEEeeeeeecCCEE----EecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC---CCCCeEEEcCcchhccCHH
Confidence 45899999999999998 9999999999999999999999999999999999999 9999999999763
Q ss_pred -----CCeEEEEeccCCCCCcccCCcccCHHHHHHhc-CCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchh
Q 021380 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 149 -----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~l 219 (313)
.+++|++||.+..+. .+||+||+.|+.+.+ ..++....+.+..-|+.+|.. .++++.+|||||++|++|
T Consensus 79 ~~~~ir~r~GvlFQ~gALFs--sltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaL 156 (263)
T COG1127 79 ELYEIRKRMGVLFQQGALFS--SLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVAL 156 (263)
T ss_pred HHHHHHhheeEEeecccccc--ccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHH
Confidence 346999999986544 499999999987654 455555556666777888843 467788999999999999
Q ss_pred hhhcccCccEEEEcCcccccCh-------hhHHHHHHhhc-CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 220 DILVGLQHKVVIVDGNYLFLDG-------GVWKDVSSMFD-EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 220 a~al~~~a~~li~d~~~llLDE-------~~~~~l~~l~~-~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
|+|++.++.+++.|+|+..||+ +++..+++.+. +.++||||++.+.. |++ |++++.|+++++..
T Consensus 157 ARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 157 ARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred HHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999999999 33333333333 25799999999887 555 89999999998865
No 11
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.7e-41 Score=289.12 Aligned_cols=204 Identities=17% Similarity=0.179 Sum_probs=172.1
Q ss_pred CeEEEccceeEc-cccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 76 PVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 76 ~~l~v~~ls~~y-~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
.+|+++||++.| +++. +|+||||+|++||+++|||+||||||||||+|+|+.. |++|+|.++|.+.
T Consensus 2 ~~i~~~nl~k~yp~~~~----aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d---~t~G~i~~~g~~i~~~~~k 74 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQ----ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD---PTSGEILFNGVQITKLKGK 74 (258)
T ss_pred ceEEEeeeeeecCCCce----eeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC---CCcceEEecccchhccchH
Confidence 479999999999 6666 9999999999999999999999999999999999999 9999999999652
Q ss_pred -----CCeEEEEeccCCCCCcccCCcccCHHHHHH--------hcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccC
Q 021380 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHA--------RRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGV 213 (313)
Q Consensus 149 -----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~--------~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGe 213 (313)
++.+||+||+....+ .++|.+|+..+.. ..+...+.+...+.+.|++++. ....+..+|||||
T Consensus 75 ~lr~~r~~iGmIfQ~~nLv~--r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQ 152 (258)
T COG3638 75 ELRKLRRDIGMIFQQFNLVP--RLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQ 152 (258)
T ss_pred HHHHHHHhceeEeccCCccc--ccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcch
Confidence 245999999954333 5899999887542 3456667778888999999994 4456778999999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccCCh
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKP 278 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~~ 278 (313)
+|||+||++|+.++++++.|+|+.-||+ .+++.|+++... +|+..|+++.+.+ |++ ||++++|++
T Consensus 153 QQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~ 232 (258)
T COG3638 153 QQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPA 232 (258)
T ss_pred hHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCCh
Confidence 9999999999999999999999999999 556666665542 4688899999998 877 899999999
Q ss_pred hHHHHHHHHh
Q 021380 279 PDVAKWRIEY 288 (313)
Q Consensus 279 ~e~~~~~~~~ 288 (313)
.++....+..
T Consensus 233 ~el~~~~~~~ 242 (258)
T COG3638 233 SELTDEALDE 242 (258)
T ss_pred hhhhHHHHHH
Confidence 8866554443
No 12
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=5.8e-41 Score=280.81 Aligned_cols=190 Identities=18% Similarity=0.131 Sum_probs=162.4
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
||+++||+|.|++.. .+|+||||+|++||++.|+||||||||||+|+|.+..+ |++|+|+++|.+.
T Consensus 1 mI~f~~V~k~Y~~g~---~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~---pt~G~i~~~~~dl~~l~~~~i 74 (223)
T COG2884 1 MIRFENVSKAYPGGR---EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER---PTRGKILVNGHDLSRLKGREI 74 (223)
T ss_pred CeeehhhhhhcCCCc---hhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc---CCCceEEECCeeccccccccc
Confidence 589999999997543 39999999999999999999999999999999999999 9999999999762
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhc
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al 223 (313)
++.||+||||.-.++ ++||+||+++++...|.++....+++.++|+.++.. .+..+.+|||||||||+||+|+
T Consensus 75 P~LRR~IGvVFQD~rLL~--~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAi 152 (223)
T COG2884 75 PFLRRQIGVVFQDFRLLP--DRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAI 152 (223)
T ss_pred chhhheeeeEeeeccccc--cchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHH
Confidence 457999999954443 589999999999999988888888999999999954 4456779999999999999999
Q ss_pred ccCccEEEEcCcccccChhhHHHHHHhhc-------CeEEEEcChHHHHH---HHH----hhhhc
Q 021380 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKWFIEVDLDTAMQ---RVL----KRHIS 274 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE~~~~~l~~l~~-------~~i~vtHd~~~~~~---rvi----gr~v~ 274 (313)
+..+.+|+.|+|+--||+..-..+.+++. .++++|||.+.+.. |++ ||++.
T Consensus 153 V~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~ 217 (223)
T COG2884 153 VNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVR 217 (223)
T ss_pred ccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEe
Confidence 99999999999999999954444444443 25799999999887 554 66554
No 13
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-40 Score=287.94 Aligned_cols=205 Identities=15% Similarity=0.131 Sum_probs=172.3
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
|++|+++|+++.|+......++|++|||+|.+||++||+|++|||||||+++|+|+.+ |++|+|.++|...
T Consensus 1 ~~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~---p~~G~I~~~G~~~~~~~~~ 77 (252)
T COG1124 1 MTLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK---PSSGSILLDGKPLAPKKRA 77 (252)
T ss_pred CceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC---CCCceEEECCcccCccccc
Confidence 4589999999999876544459999999999999999999999999999999999999 9999999999642
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc---CCCccCCCCCccCCCcchhhhh
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~LSgGekqRv~la~a 222 (313)
.+.+.+||||++.-.++.+||.+.+..+....+.+. ...++.++|+.++. ..++++.+|||||+||++||+|
T Consensus 78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~--~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARA 155 (252)
T COG1124 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSK--SQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARA 155 (252)
T ss_pred hhhccceeEEecCCccccCcchhHHHHHhhhhccCCccH--HHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHH
Confidence 345899999998888888999998888877655443 33458899999994 3578888999999999999999
Q ss_pred cccCccEEEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
++..+++|++|+++..||- .+++.+.++.+. .+|||||+..+.. |++ |++++.++..++...
T Consensus 156 L~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 156 LIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred hccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 9999999999999999998 455555554433 4799999999987 665 889998888777654
No 14
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.8e-40 Score=288.81 Aligned_cols=185 Identities=15% Similarity=0.096 Sum_probs=153.1
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC---------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------- 147 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~--------- 147 (313)
|++++||+|.|+.......+|+++||+|++||+++|+|||||||||||++|.|+.+ |++|.|.++|.+
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~---pt~G~v~i~g~d~~~l~~~~~ 77 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PTSGEVLINGKDLTKLSEKEL 77 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEcCcCCHHHH
Confidence 47899999999754333559999999999999999999999999999999999999 999999999854
Q ss_pred ---CCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CC-ccCCCCCccCCCcchhhh
Q 021380 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GS-VYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 148 ---~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~-~~~~~LSgGekqRv~la~ 221 (313)
+.+.+|||||+...++ .+|+.||+.++....+.+......++..+++.++.. .. +++.+|||||||||+||+
T Consensus 78 ~~~R~~~iGfvFQ~~nLl~--~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIAR 155 (226)
T COG1136 78 AKLRRKKIGFVFQNFNLLP--DLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIAR 155 (226)
T ss_pred HHHHHHhEEEECccCCCCC--CCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHH
Confidence 2346999999954443 599999999988776665444456677888887843 34 567799999999999999
Q ss_pred hcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 222 al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
|++.++.+++.|+|+--||. .+++.+.++.+ .+|+||||.+.+..
T Consensus 156 AL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~ 208 (226)
T COG1136 156 ALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKY 208 (226)
T ss_pred HHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHh
Confidence 99999999999999999999 45555555543 25799999999876
No 15
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-40 Score=297.92 Aligned_cols=215 Identities=16% Similarity=0.213 Sum_probs=182.3
Q ss_pred CCeEEEccceeEcccccc--------------------ccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhccc
Q 021380 75 IPVVEARCMDEVYDALAQ--------------------RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI 134 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~--------------------~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~ 134 (313)
+..|+++||+|-||.++. .+.-++|+||+|++|||+.|+|-||||||||+|+|.++++
T Consensus 2 ~~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie-- 79 (386)
T COG4175 2 MVKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE-- 79 (386)
T ss_pred CceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--
Confidence 446899999999986531 1335789999999999999999999999999999999999
Q ss_pred CCCCceeeeCCCCC------------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--c
Q 021380 135 WPQKASSFDSQVKP------------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--N 200 (313)
Q Consensus 135 ~p~~G~i~~~~~~~------------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~ 200 (313)
|++|+|.++|.+. .+.+++|||..-.++ +.||.+|..|+.+..|.++.+..+++.++|+.+| .
T Consensus 80 -pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlP--hrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~ 156 (386)
T COG4175 80 -PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLP--HRTVLENVAFGLEVQGVPKAEREERALEALELVGLEG 156 (386)
T ss_pred -CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcccc--chhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchh
Confidence 9999999999762 356999999944333 6899999999999999998888889999999999 4
Q ss_pred CCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhh----cCeEEEEcChHHHHH---HHH
Q 021380 201 QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMF----DEKWFIEVDLDTAMQ---RVL 269 (313)
Q Consensus 201 ~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~----~~~i~vtHd~~~~~~---rvi 269 (313)
..++++.+|||||||||.||+|++.++.+|++|+++.-||+ ++.++|.++. ++++|||||++++++ |+.
T Consensus 157 ~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIa 236 (386)
T COG4175 157 YADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIA 236 (386)
T ss_pred hhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEE
Confidence 56778889999999999999999999999999999999999 4444444443 346799999999999 665
Q ss_pred ----hhhhccCChhHHHHHHHHhcCCchHHHHHhhc
Q 021380 270 ----KRHISTGKPPDVAKWRIEYNDRPNAELIMKSK 301 (313)
Q Consensus 270 ----gr~v~~G~~~e~~~~~~~~~~~~~~~~i~~~~ 301 (313)
|+++..|+|+|++.+ |..+|+..+-
T Consensus 237 imkdG~ivQ~Gtp~eIl~~-------PAndYV~~Fv 265 (386)
T COG4175 237 IMKDGEIVQVGTPEEILLN-------PANDYVRDFV 265 (386)
T ss_pred EecCCeEEEeCCHHHHHcC-------ccHHHHHHHH
Confidence 999999999999765 6666665543
No 16
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.7e-39 Score=298.61 Aligned_cols=201 Identities=18% Similarity=0.221 Sum_probs=174.6
Q ss_pred CCeEEEccceeEcc-ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC----
Q 021380 75 IPVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~-~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~---- 149 (313)
+.+++++||+|.|+ ++. +|+||||+|++|+++||+||||||||||+|+|+|++. |++|+|.++|.+..
T Consensus 2 ~~~i~~~~l~k~~~~~~~----~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~---p~~G~i~i~G~~~~~~~~ 74 (293)
T COG1131 2 IEVIEVRNLTKKYGGDKT----ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK---PTSGEILVLGYDVVKEPA 74 (293)
T ss_pred CceeeecceEEEeCCCCE----EEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEEcCEeCccCHH
Confidence 45789999999999 577 9999999999999999999999999999999999999 99999999996542
Q ss_pred ---CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCC--CccCCCCCccCCCcchhhhhcc
Q 021380 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 150 ---~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~LSgGekqRv~la~al~ 224 (313)
+.+||++|++..+ +.+|++|++.+....++.+...+.+++.++++.++... ++++..||+|||||+.||.|++
T Consensus 75 ~~~~~igy~~~~~~~~--~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~ 152 (293)
T COG1131 75 KVRRRIGYVPQEPSLY--PELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALL 152 (293)
T ss_pred HHHhheEEEccCCCCC--ccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHh
Confidence 4699999997633 36999999999999887665455678899999999665 6778899999999999999999
Q ss_pred cCccEEEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 225 ~~a~~li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
.+|+++++|+|+..||+ .+++.|+++.+. ++++||.++++.. |++ |++++.|++.++...
T Consensus 153 ~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 153 HDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999 667777777653 4589999999988 555 999999988876544
No 17
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.8e-39 Score=284.73 Aligned_cols=202 Identities=15% Similarity=0.155 Sum_probs=174.8
Q ss_pred CeEEEccceeEcccc-ccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 76 PVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~-~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
++++++++++.|++. . +|+++||+|++|++++|+|+||||||||+++|+|+++ |++|.|.++|.+.
T Consensus 2 ~~i~~~~l~~~y~~~~~----~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~---p~~G~v~~~g~~~~~~~~~ 74 (235)
T COG1122 2 RMIEAENLSFRYPGRKA----ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK---PTSGEVLVDGLDTSSEKSL 74 (235)
T ss_pred ceEEEEEEEEEcCCCce----eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc---CCCCEEEECCeeccchhhH
Confidence 579999999999775 4 9999999999999999999999999999999999999 9999999998652
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhc
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al 223 (313)
.+.+||++|++..... .-||.+.++|+..+.+.+......++.++++.++. ..++.+..|||||||||+||.++
T Consensus 75 ~~~~~~vG~VfQnpd~q~~-~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vL 153 (235)
T COG1122 75 LELRQKVGLVFQNPDDQLF-GPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVL 153 (235)
T ss_pred HHhhcceEEEEECcccccc-cCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHH
Confidence 3579999999855443 25999999999999998877677788999999984 46778889999999999999999
Q ss_pred ccCccEEEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccCChhHHHHHH
Q 021380 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWR 285 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~~ 285 (313)
+..+++|++|||+..||. .+++.+.++... +|++|||++.+.. |++ |+++.+|+|.++..+.
T Consensus 154 a~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 154 AMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred HcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhhh
Confidence 999999999999999999 455555555433 5799999999988 555 8999999998887653
No 18
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-39 Score=273.45 Aligned_cols=200 Identities=18% Similarity=0.148 Sum_probs=171.0
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------C
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------P 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------~ 149 (313)
||++.+++|+|+... .+++||||++++|+++||+|||||||||+||+|++++. |++|.|.++|.+. +
T Consensus 1 Ml~v~~l~K~y~~~v---~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~---P~~G~v~idg~d~~~~p~~vr 74 (245)
T COG4555 1 MLEVTDLTKSYGSKV---QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI---PDSGKVTIDGVDTVRDPSFVR 74 (245)
T ss_pred CeeeeehhhhccCHH---hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc---CCCceEEEeecccccChHHHh
Confidence 589999999999854 38999999999999999999999999999999999999 9999999999763 3
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcccCc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~~a 227 (313)
+.+|+++-... ++ ..||++||+.|+..+++........++.++.+.|+ ...++.+.+||.||||||+||+|++++|
T Consensus 75 r~IGVl~~e~g-lY-~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P 152 (245)
T COG4555 75 RKIGVLFGERG-LY-ARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDP 152 (245)
T ss_pred hhcceecCCcC-hh-hhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCC
Confidence 56888884432 22 35999999999999999887777788888888888 4568899999999999999999999999
Q ss_pred cEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 228 KVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 228 ~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
+++++|+|+..||- .+.+.+.++... +||.||+++++.. |++ |.++..|.++++.+.
T Consensus 153 ~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 153 SILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred CeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 99999999999998 344444444432 5799999999987 665 999999999888665
No 19
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=5.5e-39 Score=302.29 Aligned_cols=200 Identities=14% Similarity=0.167 Sum_probs=167.8
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
|.+|+++||++.|++.. +|+|+||++++|++++|+|||||||||||++|+|+++ |++|+|.++|.+.
T Consensus 2 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~ 74 (353)
T TIGR03265 2 SPYLSIDNIRKRFGAFT----ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER---QTAGTIYQGGRDITRLPPQ 74 (353)
T ss_pred CcEEEEEEEEEEeCCeE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHH
Confidence 56899999999998876 9999999999999999999999999999999999999 9999999998642
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~ 226 (313)
.+.++|++|+...++ ++|+.+|+.++...++.+......++.++++.++. ..++++.+|||||||||+||++++.+
T Consensus 75 ~r~ig~v~Q~~~lfp--~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~ 152 (353)
T TIGR03265 75 KRDYGIVFQSYALFP--NLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATS 152 (353)
T ss_pred HCCEEEEeCCcccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 246999999954333 59999999998765554444445678889998884 35778889999999999999999999
Q ss_pred ccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 227 HKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 227 a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++++++|+|+..||.. +++.|.++.+ .+|+||||++++.. |++ |++++.|++.++..
T Consensus 153 P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 153 PGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999984 4444444433 25799999999876 555 99999999888764
No 20
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-39 Score=302.00 Aligned_cols=201 Identities=15% Similarity=0.177 Sum_probs=167.5
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~----- 148 (313)
.|++|+++||++.|++.. +|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~~ 75 (351)
T PRK11432 3 QKNFVVLKNITKRFGSNT----VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK---PTEGQIFIDGEDVTHRSI 75 (351)
T ss_pred CCcEEEEEeEEEEECCeE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCH
Confidence 367899999999998766 9999999999999999999999999999999999999 9999999998642
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhccc
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
.+.++|++|+...++ ++|+.+|+.++...++.+.....+++.++++.++. ..++++.+|||||||||+||++++.
T Consensus 76 ~~r~ig~vfQ~~~lfp--~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~ 153 (351)
T PRK11432 76 QQRDICMVFQSYALFP--HMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALIL 153 (351)
T ss_pred HHCCEEEEeCCcccCC--CCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 256999999964333 58999999998765554443445677888888884 3567888999999999999999999
Q ss_pred CccEEEEcCcccccChhhHH----HHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 226 QHKVVIVDGNYLFLDGGVWK----DVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 226 ~a~~li~d~~~llLDE~~~~----~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++++|++|+|+..||....+ .|.++.. .+|+||||.+++.. |++ |+++..|++.++..
T Consensus 154 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~ 226 (351)
T PRK11432 154 KPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYR 226 (351)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999994444 4444432 25799999999876 555 89999999888754
No 21
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-39 Score=303.56 Aligned_cols=200 Identities=16% Similarity=0.121 Sum_probs=166.0
Q ss_pred CCeEEEccceeEc-cccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----
Q 021380 75 IPVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y-~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~----- 148 (313)
|.+|+++||++.| ++.. +|+|+||+|++|++++|+||||||||||||+|+|+++ |++|+|.++|.+.
T Consensus 1 m~~l~i~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~ 73 (356)
T PRK11650 1 MAGLKLQAVRKSYDGKTQ----VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGGRVVNELEP 73 (356)
T ss_pred CCEEEEEeEEEEeCCCCE----EEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCH
Confidence 4579999999999 6666 9999999999999999999999999999999999999 9999999998643
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhccc
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
.+.++|++|+...++ ++|+.+|+.++...++.+......++.++++.++. ..++++.+|||||||||+||+|++.
T Consensus 74 ~~r~ig~v~Q~~~lfp--~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~ 151 (356)
T PRK11650 74 ADRDIAMVFQNYALYP--HMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVR 151 (356)
T ss_pred HHCCEEEEeCCccccC--CCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 246999999965433 58999999998765544433334567888888884 4577888999999999999999999
Q ss_pred CccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 226 QHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 226 ~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++++|++|+|+..||.. +++.|.++.+ .+|+||||++++.. |++ |++++.|++.++..
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~ 224 (356)
T PRK11650 152 EPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYE 224 (356)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHh
Confidence 99999999999999984 4444444433 25799999999876 554 89999999988754
No 22
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-38 Score=269.65 Aligned_cols=203 Identities=13% Similarity=0.112 Sum_probs=162.6
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCceeeeCCCCC----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP---- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~--~p~~G~i~~~~~~~---- 148 (313)
++.++++||++.||++. +|+|||++|+++.++|||||+|||||||||++..+.... .-.+|+|.++|.+.
T Consensus 5 ~~~~~~~~l~~yYg~~~----aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~ 80 (253)
T COG1117 5 IPAIEVRDLNLYYGDKH----ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPK 80 (253)
T ss_pred cceeEecceeEEECchh----hhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCC
Confidence 45799999999999988 999999999999999999999999999999999987611 11349999998762
Q ss_pred ------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh------cCCCccCCCCCccCCCc
Q 021380 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR------NQGSVYAPSFDHGVGDP 216 (313)
Q Consensus 149 ------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~------~~~~~~~~~LSgGekqR 216 (313)
++++|+|||.+..++ ++++||+.++.+..|...+.-.+.++..|+... +..++....|||||+||
T Consensus 81 ~d~~~lRr~vGMVFQkPnPFp---~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQR 157 (253)
T COG1117 81 VDVVELRRRVGMVFQKPNPFP---MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQR 157 (253)
T ss_pred CCHHHHHHHheeeccCCCCCC---chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHH
Confidence 356999999976443 899999999999887655333444555554433 34556677999999999
Q ss_pred chhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhcC--eEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 217 v~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++||++++..+.+|++|+|+.-||+ .+-+.|.++.+. +|+|||+|..+.+ +.. |++++.|+++++..
T Consensus 158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~ 237 (253)
T COG1117 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFT 237 (253)
T ss_pred HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhc
Confidence 9999999999999999999999999 333344444433 5799999999887 333 99999999988865
Q ss_pred H
Q 021380 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 238 ~ 238 (253)
T COG1117 238 N 238 (253)
T ss_pred C
Confidence 4
No 23
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.9e-38 Score=300.39 Aligned_cols=201 Identities=17% Similarity=0.186 Sum_probs=166.3
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~----- 148 (313)
++++|+++|+++.|++.. +|+++||+|++|++++|+|||||||||||++|+|+++ |++|+|.++|.+.
T Consensus 11 ~~~~L~l~~l~~~~~~~~----~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~~ 83 (375)
T PRK09452 11 LSPLVELRGISKSFDGKE----VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET---PDSGRIMLDGQDITHVPA 83 (375)
T ss_pred CCceEEEEEEEEEECCeE----EEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCH
Confidence 456899999999998776 9999999999999999999999999999999999999 9999999998652
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhccc
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
.+.++|+||+...++ ++|+.+|+.++...++.+......++.++++.++. ..++++.+|||||+|||+||++++.
T Consensus 84 ~~r~ig~vfQ~~~lfp--~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~ 161 (375)
T PRK09452 84 ENRHVNTVFQSYALFP--HMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVN 161 (375)
T ss_pred HHCCEEEEecCcccCC--CCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 246999999964333 58999999998665544333334567788888874 3577888999999999999999999
Q ss_pred CccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 226 QHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 226 ~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++++|++|+|+..||.. +++.|.++.+ .+|+||||.+++.. |++ |++++.|++.++..
T Consensus 162 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~ 234 (375)
T PRK09452 162 KPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYE 234 (375)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999994 4444444433 24799999999876 554 89999999888754
No 24
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2.5e-38 Score=293.02 Aligned_cols=201 Identities=17% Similarity=0.158 Sum_probs=167.6
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
.++|+++||+|.|++.. +|+||||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 5 ~~~i~i~~l~k~~~~~~----~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~---p~~G~v~i~G~~~~~~~~~ 77 (306)
T PRK13537 5 VAPIDFRNVEKRYGDKL----VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH---PDAGSISLCGEPVPSRARH 77 (306)
T ss_pred CceEEEEeEEEEECCeE----EEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEecccchHH
Confidence 35799999999998776 9999999999999999999999999999999999999 9999999998753
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhccc
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
.+.++|++|+...++ .+|+.+|+.+....++.+......++.++++.++. ..++++..||+|||||++||+|++.
T Consensus 78 ~~~~ig~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~ 155 (306)
T PRK13537 78 ARQRVGVVPQFDNLDP--DFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVN 155 (306)
T ss_pred HHhcEEEEeccCcCCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhC
Confidence 246999999965333 58999999987666654433334566788888874 3467788999999999999999999
Q ss_pred CccEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 226 ~a~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
++++|++|+|+..||. .+++.|.++.+. +|++||+++++.. |++ |++++.|+++++...
T Consensus 156 ~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 156 DPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999 455666665432 4699999999876 554 899999999888654
No 25
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.6e-38 Score=296.21 Aligned_cols=202 Identities=15% Similarity=0.128 Sum_probs=164.4
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
||+++||+|.|++......+|+||||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~---p~~G~I~i~G~~i~~~~~~~l 77 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTSGSVIVDGQDLTTLSNSEL 77 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHHHH
Confidence 58999999999632111239999999999999999999999999999999999999 9999999998642
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhc
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al 223 (313)
.+.++|++|+...++ .+|+.+|+.+.....+.+.....+++.++++.++. ..++++.+|||||||||+||+|+
T Consensus 78 ~~~r~~Ig~v~Q~~~l~~--~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL 155 (343)
T TIGR02314 78 TKARRQIGMIFQHFNLLS--SRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARAL 155 (343)
T ss_pred HHHhcCEEEEECCccccc--cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 236999999954333 48999999987765554444445667888999884 35678889999999999999999
Q ss_pred ccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
+.++++|++|+|+..||+ .+++.|.++.+ .+|++|||++++.+ |++ |++++.|++.++..
T Consensus 156 ~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 156 ASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 999999999999999999 44455555543 24799999999876 554 89999999887753
No 26
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.3e-39 Score=273.20 Aligned_cols=210 Identities=17% Similarity=0.183 Sum_probs=170.8
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~----- 149 (313)
|.+|.++|+.|+|+.+. ++++|||+|++||+|||+|||||||||.+.|+.|+.+ |++|+|.+++.+..
T Consensus 2 ~~~L~a~~l~K~y~kr~----Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~---~d~G~i~ld~~diT~lPm~ 74 (243)
T COG1137 2 MSTLVAENLAKSYKKRK----VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR---PDSGKILLDDEDITKLPMH 74 (243)
T ss_pred CcEEEehhhhHhhCCee----eeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe---cCCceEEECCcccccCChH
Confidence 56799999999999988 9999999999999999999999999999999999999 99999999998743
Q ss_pred ----CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCC--ccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhh
Q 021380 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT--FNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 150 ----~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~--~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~ 221 (313)
.-+||++|++..+- .+||.+|+....+......+ ....++.++|+.|.. ..+.+...||||||+|+.||+
T Consensus 75 ~RArlGigYLpQE~SIFr--~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIAR 152 (243)
T COG1137 75 KRARLGIGYLPQEASIFR--KLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIAR 152 (243)
T ss_pred HHhhcCcccccccchHhh--cCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHH
Confidence 23899999965433 59999999988776653333 334457789999883 456677799999999999999
Q ss_pred hcccCccEEEEcCcccccCh----hhHHHHHHhhcCe---EEEEcChHHHHH---HH--H--hhhhccCChhHHHHHHHH
Q 021380 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEK---WFIEVDLDTAMQ---RV--L--KRHISTGKPPDVAKWRIE 287 (313)
Q Consensus 222 al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~~---i~vtHd~~~~~~---rv--i--gr~v~~G~~~e~~~~~~~ 287 (313)
|++.+++.+++|+|+...|+ ++.+.+..+.+.+ ++.+|+..+.+. |. + |++++.|+|++++....-
T Consensus 153 aLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~~V 232 (243)
T COG1137 153 ALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNEDV 232 (243)
T ss_pred HHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcChhh
Confidence 99999999999999999999 4444444444443 367799888776 33 2 999999999999876444
Q ss_pred hcCCch
Q 021380 288 YNDRPN 293 (313)
Q Consensus 288 ~~~~~~ 293 (313)
+..+..
T Consensus 233 r~~YLG 238 (243)
T COG1137 233 RRVYLG 238 (243)
T ss_pred hhhccc
Confidence 333333
No 27
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=4.2e-38 Score=294.95 Aligned_cols=202 Identities=18% Similarity=0.177 Sum_probs=167.6
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~----- 148 (313)
++++|+++||+|.|++.. +|+||||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 38 ~~~~i~i~nl~k~y~~~~----~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~---p~~G~i~i~G~~~~~~~~ 110 (340)
T PRK13536 38 STVAIDLAGVSKSYGDKA----VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS---PDAGKITVLGVPVPARAR 110 (340)
T ss_pred CceeEEEEEEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCceEEEECCEECCcchH
Confidence 356899999999999877 9999999999999999999999999999999999999 9999999998653
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcc
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~ 224 (313)
.+.++|++|+...++ .+|+.+|+.+....++.......+.+.++++.++.. .++++.+||||||||++||++++
T Consensus 111 ~~~~~ig~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~ 188 (340)
T PRK13536 111 LARARIGVVPQFDNLDL--EFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALI 188 (340)
T ss_pred HHhccEEEEeCCccCCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHh
Confidence 245999999964333 589999998766555543333344566788887743 57788899999999999999999
Q ss_pred cCccEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 225 ~~a~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
.+++++++|+|+..||+ .+++.|.++... +|++||+++++.. |++ |+++..|+++++...
T Consensus 189 ~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 189 NDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999 455555555332 4799999999876 554 899999999888654
No 28
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-38 Score=296.17 Aligned_cols=201 Identities=15% Similarity=0.165 Sum_probs=166.6
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~----- 148 (313)
++++|+++|+++.|++.. +|+++||+|++|++++|+||||||||||||+|+|+++ |++|+|.++|.+.
T Consensus 16 ~~~~l~l~~v~~~~~~~~----~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~ 88 (377)
T PRK11607 16 LTPLLEIRNLTKSFDGQH----AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ---PTAGQIMLDGVDLSHVPP 88 (377)
T ss_pred CCceEEEEeEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCH
Confidence 355899999999998766 9999999999999999999999999999999999999 9999999998642
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhccc
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
.+.++|++|+...++ ++|+.+|+.++....+.+.....+++.++++.++. ..++++.+|||||||||+||++++.
T Consensus 89 ~~r~ig~vfQ~~~lfp--~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~ 166 (377)
T PRK11607 89 YQRPINMMFQSYALFP--HMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAK 166 (377)
T ss_pred HHCCEEEEeCCCccCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 346999999965433 58999999998765544433344567788888884 3577888999999999999999999
Q ss_pred CccEEEEcCcccccChhhHHH----HHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 226 QHKVVIVDGNYLFLDGGVWKD----VSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 226 ~a~~li~d~~~llLDE~~~~~----l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++++|++|+|+..||....+. +.++.. .+|+||||++++.. |++ |+++..|++.++..
T Consensus 167 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 167 RPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 999999999999999954443 334433 25799999999876 554 89999999988754
No 29
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=9.3e-38 Score=294.59 Aligned_cols=199 Identities=13% Similarity=0.165 Sum_probs=166.0
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC--ceeeeCCCCC------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK--ASSFDSQVKP------ 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~--G~i~~~~~~~------ 148 (313)
.|+++||+|.|++.. +|+|+||+|.+|++++|+|||||||||||++|+|+++ |++ |+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~~~G~i~~~g~~~~~~~~~ 77 (362)
T TIGR03258 5 GIRIDHLRVAYGANT----VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK---AAGLTGRIAIADRDLTHAPPH 77 (362)
T ss_pred EEEEEEEEEEECCeE----EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCEEEEECCEECCCCCHH
Confidence 488999999998766 9999999999999999999999999999999999999 999 9999998642
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~ 226 (313)
.+.++|++|+...+ +++|+++|+.++...++.+......++.++++.++. ..++++.+|||||||||+||++++.+
T Consensus 78 ~r~ig~vfQ~~~l~--p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~ 155 (362)
T TIGR03258 78 KRGLALLFQNYALF--PHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIE 155 (362)
T ss_pred HCCEEEEECCcccC--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 24699999996433 358999999998766554443445567888888884 35778889999999999999999999
Q ss_pred ccEEEEcCcccccChh----hHHHHHHhhc-----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 227 HKVVIVDGNYLFLDGG----VWKDVSSMFD-----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 227 a~~li~d~~~llLDE~----~~~~l~~l~~-----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
+++|++|+|+..||.. +++.|.++.+ .+|+||||++++.. |++ |+++..|++.++..+
T Consensus 156 P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 156 PDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999994 4444444433 24799999999876 555 899999999888643
No 30
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-37 Score=294.96 Aligned_cols=200 Identities=16% Similarity=0.153 Sum_probs=164.2
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
|.+|+++||++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 m~~l~i~~l~~~~~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~---p~~G~I~~~g~~i~~~~~~ 73 (369)
T PRK11000 1 MASVTLRNVTKAYGDVV----ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED---ITSGDLFIGEKRMNDVPPA 73 (369)
T ss_pred CCEEEEEEEEEEeCCeE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCHh
Confidence 45799999999998776 9999999999999999999999999999999999999 9999999988542
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~ 226 (313)
.+.++|++|+...++ .+|+.+|+.+.....+.+.....+++.++++.++.. .++++.+|||||||||+||++++.+
T Consensus 74 ~~~i~~v~Q~~~l~~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~ 151 (369)
T PRK11000 74 ERGVGMVFQSYALYP--HLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAE 151 (369)
T ss_pred HCCEEEEeCCcccCC--CCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 245999999964333 589999999876554433333345678888888843 4677889999999999999999999
Q ss_pred ccEEEEcCcccccChhh----HHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 227 HKVVIVDGNYLFLDGGV----WKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 227 a~~li~d~~~llLDE~~----~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
+++|++|+|+..||... ++.|.++.. .+|+||||++++.. |++ |+++..|++.++..
T Consensus 152 P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 152 PSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999944 444455433 25799999998876 544 88888898887753
No 31
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-37 Score=271.43 Aligned_cols=200 Identities=21% Similarity=0.201 Sum_probs=165.0
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------ 149 (313)
+++++++|+|+||+.. +++||||++++|+++|||||||||||||+++|+|.++ |++|+|.++|.+..
T Consensus 3 ~lL~v~~l~k~FGGl~----Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~---P~~G~v~~~G~~it~l~p~~ 75 (250)
T COG0411 3 PLLEVRGLSKRFGGLT----AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK---PSSGTVIFRGRDITGLPPHR 75 (250)
T ss_pred ceeeeccceeecCCEE----EEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc---CCCceEEECCcccCCCCHHH
Confidence 5799999999999988 9999999999999999999999999999999999999 99999999998632
Q ss_pred ---CeEEEEeccCCCCCcccCCcccCHHHHHHhc-------CCC-----CCccHHHHHHHHHHhhc--CCCccCCCCCcc
Q 021380 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARR-------GAP-----WTFNPLLLLNCLKNLRN--QGSVYAPSFDHG 212 (313)
Q Consensus 150 ---~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~-------~~~-----~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG 212 (313)
.-++--||..-.++ .|||.||+......+ +.+ .....+++.++|+.++. ..+.+..+||+|
T Consensus 76 iar~Gi~RTFQ~~rlF~--~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG 153 (250)
T COG0411 76 IARLGIARTFQITRLFP--GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYG 153 (250)
T ss_pred HHhccceeecccccccC--CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChh
Confidence 22666788864333 599999998864422 111 22345567888999984 456677899999
Q ss_pred CCCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccCC
Q 021380 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 213 ekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~ 277 (313)
+|+|+.||+||+.+|++|++|+|...+.. ++.+.|+++.+. +++|.||++.+.. |++ |++++.|+
T Consensus 154 ~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~ 233 (250)
T COG0411 154 QQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGT 233 (250)
T ss_pred HhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCC
Confidence 99999999999999999999999999998 555566666542 3599999999998 554 99999999
Q ss_pred hhHHHHH
Q 021380 278 PPDVAKW 284 (313)
Q Consensus 278 ~~e~~~~ 284 (313)
|+++...
T Consensus 234 P~eV~~d 240 (250)
T COG0411 234 PEEVRNN 240 (250)
T ss_pred HHHHhcC
Confidence 9998654
No 32
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=3.3e-37 Score=290.29 Aligned_cols=198 Identities=14% Similarity=0.165 Sum_probs=162.8
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------CC
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 150 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------~~ 150 (313)
+|+++||++.|++.. +|+|+||+|.+|++++|+||||||||||+|+|+|+++ |++|+|.++|.+. .+
T Consensus 2 ~L~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~~~r 74 (353)
T PRK10851 2 SIEIANIKKSFGRTQ----VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH---QTSGHIRFHGTDVSRLHARDR 74 (353)
T ss_pred EEEEEEEEEEeCCeE----EEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHHC
Confidence 589999999998776 9999999999999999999999999999999999999 9999999998653 24
Q ss_pred eEEEEeccCCCCCcccCCcccCHHHHHHhc----CCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcc
Q 021380 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 151 ~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~ 224 (313)
.++|++|+...++ ++|+.+|+.+..... +.+.....+++.++++.++. ..++++.+|||||||||+||++++
T Consensus 75 ~i~~v~Q~~~l~p--~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~ 152 (353)
T PRK10851 75 KVGFVFQHYALFR--HMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALA 152 (353)
T ss_pred CEEEEecCcccCC--CCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHh
Confidence 6999999954333 589999999876532 11222334567888888884 356788899999999999999999
Q ss_pred cCccEEEEcCcccccChhh----HHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 225 LQHKVVIVDGNYLFLDGGV----WKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 225 ~~a~~li~d~~~llLDE~~----~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
.++++|++|+|+..||... ++.|.++.+ .+|+||||++++.. |++ |++++.|++.++..
T Consensus 153 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 153 VEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999944 444444433 24799999999887 554 89999999888754
No 33
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.7e-37 Score=266.98 Aligned_cols=199 Identities=17% Similarity=0.168 Sum_probs=175.2
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC----CCeE
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----PDVA 152 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~----~~~i 152 (313)
+|++++|+|+||++. +++||||++++|++.|++|+|||||||++|+|+|+++ |++|+|.|+|.+. ..+|
T Consensus 2 ~L~ie~vtK~Fg~k~----av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle---~~~G~I~~~g~~~~~~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFGDKK----AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE---PTEGEITWNGGPLSQEIKNRI 74 (300)
T ss_pred ceEEecchhccCcee----eecceeeeecCCeEEEeecCCCCCccchHHHHhccCC---ccCceEEEcCcchhhhhhhhc
Confidence 589999999999998 9999999999999999999999999999999999999 9999999999764 3569
Q ss_pred EEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcccCccEE
Q 021380 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 153 ~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~~a~~l 230 (313)
||+|...-.++ .+||.|.+.|.+.+.|.+.++...++..+|+++. ....+++.+||.|++|++.+..++++.+.++
T Consensus 75 GyLPEERGLy~--k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLl 152 (300)
T COG4152 75 GYLPEERGLYP--KMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELL 152 (300)
T ss_pred ccChhhhccCc--cCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEE
Confidence 99999865444 4999999999999999998888888999999998 4556788899999999999999999999999
Q ss_pred EEcCcccccChhhHHHHH----HhhcC---eEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 231 IVDGNYLFLDGGVWKDVS----SMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 231 i~d~~~llLDE~~~~~l~----~l~~~---~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
++|+|+..||+-..+.|+ ++.+. +||.||.|+.+.+ +++ |+.|.+|+..++...
T Consensus 153 ILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~ 220 (300)
T COG4152 153 ILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRS 220 (300)
T ss_pred EecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHh
Confidence 999999999994444333 33333 5799999999988 665 899999998888664
No 34
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=4.3e-37 Score=284.52 Aligned_cols=199 Identities=18% Similarity=0.175 Sum_probs=161.5
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------C
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------P 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------~ 149 (313)
+|+++||++.|++.. +|+++||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 4 ~i~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 76 (303)
T TIGR01288 4 AIDLVGVSKSYGDKV----VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS---PDRGKITVLGEPVPSRARLAR 76 (303)
T ss_pred EEEEEeEEEEeCCeE----EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECcccHHHHh
Confidence 699999999998776 9999999999999999999999999999999999999 9999999998642 3
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a 227 (313)
+.++|++|+...++ .+|+.+|+.+....++........++.++++.++.. .++++.+||||||||++||++++.++
T Consensus 77 ~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 154 (303)
T TIGR01288 77 VAIGVVPQFDNLDP--EFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDP 154 (303)
T ss_pred hcEEEEeccccCCc--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 46999999964332 489999998755444433222234566778877743 46778899999999999999999999
Q ss_pred cEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 228 KVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 228 ~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
+++++|+|+..||.. +++.|.++.. .+|++|||++++.. |++ |+++..|+++++...
T Consensus 155 ~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 155 QLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999994 4445555432 24799999998876 554 888889988887654
No 35
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-37 Score=285.78 Aligned_cols=209 Identities=14% Similarity=0.147 Sum_probs=164.5
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhccc-CCCCceeeeCCCCCC----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKASSFDSQVKPP---- 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~-~p~~G~i~~~~~~~~---- 149 (313)
|.+|+++||++.|+.......+|+||||+|.+||++||+|+||||||||+++|+|+++.. .|++|+|.++|.+..
T Consensus 1 m~~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~ 80 (326)
T PRK11022 1 MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE 80 (326)
T ss_pred CceEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence 557999999999976322234999999999999999999999999999999999999610 028999999986521
Q ss_pred --------CeEEEEeccCCCCCcccCCcccCHHHHHHhc-CCCCCccHHHHHHHHHHhhcC-----CCccCCCCCccCCC
Q 021380 150 --------DVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVGD 215 (313)
Q Consensus 150 --------~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~LSgGekq 215 (313)
+.++|++|+++...++.+++.+++....... +.......+++.++|+.++.. .+.++.+|||||+|
T Consensus 81 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~Q 160 (326)
T PRK11022 81 KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ 160 (326)
T ss_pred HHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHH
Confidence 2599999997543455688888776654432 223233456678889998853 35678899999999
Q ss_pred cchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e 280 (313)
||+||+|++.++++|++|+|+..||. .+++.|.++.+ .+||||||++++.+ |++ |++++.|++.+
T Consensus 161 Rv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~ 240 (326)
T PRK11022 161 RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHD 240 (326)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999 45555555543 25799999999865 555 99999999888
Q ss_pred HHH
Q 021380 281 VAK 283 (313)
Q Consensus 281 ~~~ 283 (313)
+..
T Consensus 241 ~~~ 243 (326)
T PRK11022 241 IFR 243 (326)
T ss_pred Hhh
Confidence 764
No 36
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=6.8e-37 Score=291.62 Aligned_cols=199 Identities=18% Similarity=0.205 Sum_probs=164.1
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
|++|+++||++.|+++. +|+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 1 ~~~L~~~nls~~y~~~~----vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~---p~sG~I~l~G~~i~~~~~~ 73 (402)
T PRK09536 1 MPMIDVSDLSVEFGDTT----VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT---PTAGTVLVAGDDVEALSAR 73 (402)
T ss_pred CceEEEeeEEEEECCEE----EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEEcCcCCHH
Confidence 45899999999999877 9999999999999999999999999999999999999 9999999998652
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHHHhc----CCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhh
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la 220 (313)
.+.++|++|+...++ .+|+.+|+.+....+ +.....+.+++.++++.++.. .++++.+||||||||++||
T Consensus 74 ~~~~~ig~v~q~~~l~~--~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IA 151 (402)
T PRK09536 74 AASRRVASVPQDTSLSF--EFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLA 151 (402)
T ss_pred HHhcceEEEccCCCCCC--CCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 245999999965433 489999988754321 111233456678888888843 4677889999999999999
Q ss_pred hhcccCccEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 221 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 221 ~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
++++.++++|++|+|+..||. .+++.|+++.+ .+|++|||++++.+ |++ |+++..|+++++.
T Consensus 152 rAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 152 RALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999 45556665543 24799999999976 555 8999999998864
No 37
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.7e-37 Score=270.62 Aligned_cols=194 Identities=19% Similarity=0.200 Sum_probs=155.4
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------CC
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PD 150 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------~~ 150 (313)
|+++|+++.|++.. +|+|+||++.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+. .+
T Consensus 1 i~~~~~~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (220)
T cd03265 1 IEVENLVKKYGDFE----AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK---PTSGRATVAGHDVVREPREVRR 73 (220)
T ss_pred CEEEEEEEEECCEE----eeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecCcChHHHhh
Confidence 47899999998766 9999999999999999999999999999999999999 9999999988542 23
Q ss_pred eEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCcc
Q 021380 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a~ 228 (313)
.++|++|+...++ .+|+.+|+.+....++.......+.+.++++.++.. .+.++.+|||||+||++||++++.+++
T Consensus 74 ~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~ 151 (220)
T cd03265 74 RIGIVFQDLSVDD--ELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPE 151 (220)
T ss_pred cEEEecCCccccc--cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 5899999965332 479999998865554433223345677888888743 466788999999999999999999999
Q ss_pred EEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhH
Q 021380 229 VVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 229 ~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e 280 (313)
++++|+|+..||.. +++.|.++.. .+|++|||++++.. |++ |+++..|++++
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 152 VLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred EEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 99999999999994 3444444432 24799999998876 443 77777776554
No 38
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.1e-36 Score=284.56 Aligned_cols=206 Identities=16% Similarity=0.114 Sum_probs=163.9
Q ss_pred CCeEEEccceeEccccc---------cccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCC
Q 021380 75 IPVVEARCMDEVYDALA---------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~---------~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~ 145 (313)
.++|+++||++.|+... ....+|+||||+|.+||++||+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~---p~~G~I~~~G 82 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK---ATDGEVAWLG 82 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCCcEEEECC
Confidence 46899999999996311 12348999999999999999999999999999999999999 9999999998
Q ss_pred CCC-----------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcC--CCCCccHHHHHHHHHHhhcC---CCccCCCC
Q 021380 146 VKP-----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG--APWTFNPLLLLNCLKNLRNQ---GSVYAPSF 209 (313)
Q Consensus 146 ~~~-----------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~--~~~~~~~~~~~~~l~~l~~~---~~~~~~~L 209 (313)
.+. .+.++|++|++....++.+|+.+|+.+....+. .......+++.++++.++.. .++++.+|
T Consensus 83 ~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~L 162 (331)
T PRK15079 83 KDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEF 162 (331)
T ss_pred EECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccC
Confidence 652 245999999974223345899999988654432 22223345667888888852 46788899
Q ss_pred CccCCCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhc
Q 021380 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHIS 274 (313)
Q Consensus 210 SgGekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~ 274 (313)
||||+||++||++++.++++|++|+|+..||. .+++.|.++.+ .+||||||++++.. |++ |++++
T Consensus 163 SgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive 242 (331)
T PRK15079 163 SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVE 242 (331)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999998 34455555433 24799999999876 554 89999
Q ss_pred cCChhHHHH
Q 021380 275 TGKPPDVAK 283 (313)
Q Consensus 275 ~G~~~e~~~ 283 (313)
.|++.++..
T Consensus 243 ~g~~~~i~~ 251 (331)
T PRK15079 243 LGTYDEVYH 251 (331)
T ss_pred EcCHHHHHc
Confidence 998887754
No 39
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.5e-37 Score=272.59 Aligned_cols=196 Identities=18% Similarity=0.235 Sum_probs=155.7
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---------
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--------- 148 (313)
|+++||++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~ 73 (235)
T cd03261 1 IELRGLTKSFGGRT----VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR---PDSGEVLIDGEDISGLSEAELY 73 (235)
T ss_pred CeEEEEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccChhhHH
Confidence 46899999998766 9999999999999999999999999999999999999 9999999988542
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHHHhc-CCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhc
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al 223 (313)
.+.++|++|++..++ .+|+.+|+.+....+ +.......+++.++++.++.. .++++.+|||||+||++||+++
T Consensus 74 ~~~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al 151 (235)
T cd03261 74 RLRRRMGMLFQSGALFD--SLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARAL 151 (235)
T ss_pred HHhcceEEEccCcccCC--CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 235899999964333 479999998764432 122222234567788888743 4667789999999999999999
Q ss_pred ccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
+.+++++++|+|+..||. .+++.|.++.. .+|++|||++++.. |++ |++++.|++.++.
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 152 ALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 999999999999999998 34445555432 24799999998765 444 7888888776653
No 40
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-36 Score=285.94 Aligned_cols=201 Identities=16% Similarity=0.167 Sum_probs=160.5
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
||+++||+++|++......+|+|+||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~---p~~G~I~~~g~~i~~~~~~~~ 77 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER---PTSGRVLVDGQDLTALSEKEL 77 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHH
Confidence 58999999999721001129999999999999999999999999999999999999 9999999998642
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhc
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al 223 (313)
.+.++|++|+...++ .+|+.+|+.+....++.+.....+++.++++.++.. .++++.+||||||||++||+++
T Consensus 78 ~~~~~~ig~v~q~~~l~~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL 155 (343)
T PRK11153 78 RKARRQIGMIFQHFNLLS--SRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARAL 155 (343)
T ss_pred HHHhcCEEEEeCCCccCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 245999999965333 489999999876655543333345677888888743 4567789999999999999999
Q ss_pred ccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
+.++++|++|+|+..||. .+++.|.++.+ .+|++|||++++.. |++ |++++.|.+.++.
T Consensus 156 ~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 156 ASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999 44555555432 25799999998876 544 8888888887764
No 41
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.9e-36 Score=291.96 Aligned_cols=207 Identities=19% Similarity=0.194 Sum_probs=172.6
Q ss_pred CCCeEEEccceeEcccc-------ccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCC
Q 021380 74 EIPVVEARCMDEVYDAL-------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~-------~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~ 146 (313)
..++++++||+|.|... ...+.+++||||+|.+||++||+|+||||||||.|+|+|+++ |++|+|.++|.
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~---P~~G~i~~~g~ 353 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP---PSSGSIIFDGQ 353 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEEeCc
Confidence 45689999999999741 123568999999999999999999999999999999999999 99999999886
Q ss_pred C----------CCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCC-CCccHHHHHHHHHHhhcC---CCccCCCCCcc
Q 021380 147 K----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ---GSVYAPSFDHG 212 (313)
Q Consensus 147 ~----------~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG 212 (313)
+ ..+.+.++|||++...++.+||.+.+......+... .....+++.++++.++.. .++++++||||
T Consensus 354 ~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGG 433 (539)
T COG1123 354 DLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGG 433 (539)
T ss_pred ccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcc
Confidence 5 124689999999988888999999999887755432 233345688889999843 57889999999
Q ss_pred CCCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccCC
Q 021380 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 213 ekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~ 277 (313)
||||++||+|++.++++++.||++.-||. .+++.|.++.++ .+|||||++.+.. |++ |++++.|+
T Consensus 434 QrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~ 513 (539)
T COG1123 434 QRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGP 513 (539)
T ss_pred hhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCC
Confidence 99999999999999999999999999999 445555555443 4799999999988 665 99999997
Q ss_pred hhHHHH
Q 021380 278 PPDVAK 283 (313)
Q Consensus 278 ~~e~~~ 283 (313)
.+++..
T Consensus 514 ~~~v~~ 519 (539)
T COG1123 514 TEKVFE 519 (539)
T ss_pred HHHHhc
Confidence 666654
No 42
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-36 Score=282.18 Aligned_cols=206 Identities=15% Similarity=0.138 Sum_probs=164.6
Q ss_pred CCeEEEccceeEccccc------cccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC
Q 021380 75 IPVVEARCMDEVYDALA------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~------~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~ 148 (313)
+++|+++||++.|+... ....+|+||||+|.+|+++||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~---p~~G~i~~~g~~l 79 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET---PTGGELYYQGQDL 79 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC---CCCcEEEECCEEc
Confidence 46899999999996311 01349999999999999999999999999999999999999 9999999998652
Q ss_pred -----------CCeEEEEeccCCCCCcccCCcccCHHHHHHhc-CCCCCccHHHHHHHHHHhhcC---CCccCCCCCccC
Q 021380 149 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV 213 (313)
Q Consensus 149 -----------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGe 213 (313)
.+.++|++|+++...++.+++.+++.+..... +.......+++.++++.++.. .+.++.+|||||
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq 159 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQ 159 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHH
Confidence 23599999997544455689988887655433 223233345678889988853 467888999999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCCh
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKP 278 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~ 278 (313)
+||++||+|++.++++|++|+|+..||. .+++.|.++.+ .+||||||++++.. |++ |++++.|++
T Consensus 160 ~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~ 239 (327)
T PRK11308 160 RQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTK 239 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999998 44445554433 24799999999876 554 999999998
Q ss_pred hHHHH
Q 021380 279 PDVAK 283 (313)
Q Consensus 279 ~e~~~ 283 (313)
.++..
T Consensus 240 ~~~~~ 244 (327)
T PRK11308 240 EQIFN 244 (327)
T ss_pred HHHhc
Confidence 88765
No 43
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=2e-36 Score=279.75 Aligned_cols=199 Identities=15% Similarity=0.108 Sum_probs=164.8
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------C
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------P 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------~ 149 (313)
+|+++|++|+|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 2 ~l~~~~l~~~~~~~~----~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~---~~~G~i~i~g~~~~~~~~~~~ 74 (301)
T TIGR03522 2 SIRVSSLTKLYGTQN----ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP---PDSGSVQVCGEDVLQNPKEVQ 74 (301)
T ss_pred EEEEEEEEEEECCEE----EEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccChHHHH
Confidence 589999999998776 9999999999999999999999999999999999999 9999999998653 2
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a 227 (313)
+.++|++|++..++ .+|+.+|+.+....++.+.....+++.++++.++.. .++++..||||||||++||++++.++
T Consensus 75 ~~ig~~~q~~~l~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p 152 (301)
T TIGR03522 75 RNIGYLPEHNPLYL--DMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDP 152 (301)
T ss_pred hceEEecCCCCCCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 35999999965333 489999999877666544333345677888888843 46788899999999999999999999
Q ss_pred cEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 228 KVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 228 ~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
+++++|+|+..||.. +++.+.++.. .+|++||+++++.. |++ |+++..|+++++...
T Consensus 153 ~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 153 KVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 999999999999994 4445544432 24799999998876 554 899999998887654
No 44
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-36 Score=273.43 Aligned_cols=208 Identities=16% Similarity=0.163 Sum_probs=170.0
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCceeeeCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVK------- 147 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~--~~p~~G~i~~~~~~------- 147 (313)
+|+++||+..|......+.+++||||+|++||++||+|.|||||||+.+.|+|+++. ..-.+|+|.++|.+
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 478999999997643345599999999999999999999999999999999999961 01256899999974
Q ss_pred -----CCCeEEEEeccCCCCCcccCCcccCHHHHHHhcC-C-CCCccHHHHHHHHHHhhcC-----CCccCCCCCccCCC
Q 021380 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-A-PWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVGD 215 (313)
Q Consensus 148 -----~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~-~-~~~~~~~~~~~~l~~l~~~-----~~~~~~~LSgGekq 215 (313)
+.+.++++|||+....++.+++.+.+........ . ..++..+++.++|+.++.. .+.++.+|||||+|
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 2457999999988777888899888877766432 2 2344566788999999943 25688899999999
Q ss_pred cchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccCChhH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~~~e 280 (313)
||.||.|++.++++|+.|+|+.-||- ++++.|.++.++ .||||||+..+.+ |++ |++|+.|+..+
T Consensus 161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~ 240 (316)
T COG0444 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEE 240 (316)
T ss_pred HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHH
Confidence 99999999999999999999999998 455555555442 4799999999888 665 99999999998
Q ss_pred HHHH
Q 021380 281 VAKW 284 (313)
Q Consensus 281 ~~~~ 284 (313)
+..+
T Consensus 241 i~~~ 244 (316)
T COG0444 241 IFKN 244 (316)
T ss_pred HhcC
Confidence 8764
No 45
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-36 Score=252.75 Aligned_cols=197 Identities=15% Similarity=0.175 Sum_probs=164.0
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---CCe
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDV 151 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~---~~~ 151 (313)
|.++.+++++..|+++. ..+|+|+|++|.+||.++++||||||||||+++++|+.. |..|+|.+++... ...
T Consensus 1 M~~l~~~~~sl~y~g~~--~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~---P~~G~i~l~~r~i~gPgae 75 (259)
T COG4525 1 MCMLNVSHLSLSYEGKP--RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT---PSRGSIQLNGRRIEGPGAE 75 (259)
T ss_pred CceeehhheEEecCCcc--hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC---cccceEEECCEeccCCCcc
Confidence 56789999999998764 348999999999999999999999999999999999999 9999999998752 233
Q ss_pred EEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcccCccE
Q 021380 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~~a~~ 229 (313)
-|+|||++-.++ ++++.+|++|+....|.++....+.+.+++..++ ...++++-+||||||||+.||+|++.+++.
T Consensus 76 rgvVFQ~~~LlP--Wl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~ 153 (259)
T COG4525 76 RGVVFQNEALLP--WLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQL 153 (259)
T ss_pred ceeEeccCccch--hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcce
Confidence 578999976544 7999999999999999988877888889999988 345677779999999999999999999999
Q ss_pred EEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH---HHH------hhhhccCCh
Q 021380 230 VIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL------KRHISTGKP 278 (313)
Q Consensus 230 li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi------gr~v~~G~~ 278 (313)
|++|+|+--||- .+.+.+.+++.. +++||||++++.- |++ ||+++.-++
T Consensus 154 LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 154 LLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred EeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence 999999988887 444444454432 4699999999876 544 677765433
No 46
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-36 Score=276.75 Aligned_cols=203 Identities=14% Similarity=0.132 Sum_probs=161.5
Q ss_pred eEEEccceeEcccccc-ccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~-~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
+|+++||++.|++... ...+|+||||+|.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK---PTSGKIIIDGVDITDKKVKL 78 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCccEEEECCEECCCcCccH
Confidence 4899999999975210 1239999999999999999999999999999999999999 9999999998542
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC----CCccCCCCCccCCCcchhhh
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~LSgGekqRv~la~ 221 (313)
...++|++|++..... ..|+.+|+.+.....+.......+++.++++.++.. .++++..|||||+||++||+
T Consensus 79 ~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAr 157 (287)
T PRK13637 79 SDIRKKVGLVFQYPEYQLF-EETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAG 157 (287)
T ss_pred HHHhhceEEEecCchhccc-cccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHH
Confidence 2358999998522222 369999998876555544333345677888888853 46778899999999999999
Q ss_pred hcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 222 al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
+++.++++|++|+|+..||. .+++.|.++.. .+|++|||++++.. |++ |++++.|.+.++..
T Consensus 158 aL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 158 VVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred HHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999 44445555432 24799999998865 554 88889998888754
No 47
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-36 Score=260.94 Aligned_cols=201 Identities=15% Similarity=0.165 Sum_probs=165.7
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~----- 149 (313)
++||+++||+..||... +|++|||++++||+++|+|+||+|||||||+|+|+++ +.+|+|.++|.+..
T Consensus 1 ~~mL~v~~l~~~YG~~~----~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~---~~~G~I~~~G~dit~~p~~ 73 (237)
T COG0410 1 APMLEVENLSAGYGKIQ----ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR---PRSGRIIFDGEDITGLPPH 73 (237)
T ss_pred CCceeEEeEeeccccee----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeeEEECCeecCCCCHH
Confidence 35899999999999887 9999999999999999999999999999999999999 99999999998743
Q ss_pred ----CeEEEEeccCCCCCcccCCcccCHHHHHHhcCC--CCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhc
Q 021380 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 150 ----~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al 223 (313)
.-++|+||....++ .|||.||+..+...... ....+.+.+.+++-.+....+++..+|||||||.++||+|+
T Consensus 74 ~r~r~Gi~~VPegR~iF~--~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRAL 151 (237)
T COG0410 74 ERARLGIAYVPEGRRIFP--RLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARAL 151 (237)
T ss_pred HHHhCCeEeCcccccchh--hCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHH
Confidence 34899999865444 59999999987554322 11122455666666777778889999999999999999999
Q ss_pred ccCccEEEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
+..+++|++|+|...|-+ ++.+.|+++.+. +++|.++...++. |.+ ||++..|+.+++...
T Consensus 152 m~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 152 MSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred hcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 999999999999999998 455555555542 4699999999887 433 999999998887643
No 48
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=2.4e-36 Score=266.88 Aligned_cols=194 Identities=18% Similarity=0.193 Sum_probs=154.5
Q ss_pred EEEccceeEccc--cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 78 VEARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~--~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
|+++||++.|++ .. +|+|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (220)
T cd03263 1 LQIRNLTKTYKKGTKP----AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR---PTSGTAYINGYSIRTDRKAA 73 (220)
T ss_pred CEEEeeEEEeCCCCce----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccchHHH
Confidence 468999999976 55 9999999999999999999999999999999999999 9999999998653
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~ 226 (313)
.+.++|++|++..+. .+|+.+|+.+....++.+.....+++.++++.++. ..+.++.+||+||+||++||++++.+
T Consensus 74 ~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (220)
T cd03263 74 RQSLGYCPQFDALFD--ELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGG 151 (220)
T ss_pred hhhEEEecCcCCccc--cCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcC
Confidence 235899999864332 47999999886655443322233456778888774 34567789999999999999999999
Q ss_pred ccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhH
Q 021380 227 HKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 227 a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e 280 (313)
++++++|+|+..||.. +.+.|.++.+ .+|++|||++.+.. +++ |++++.|++++
T Consensus 152 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 218 (220)
T cd03263 152 PSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQE 218 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence 9999999999999994 4444444433 25799999998865 443 77777776654
No 49
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-36 Score=268.56 Aligned_cols=200 Identities=17% Similarity=0.172 Sum_probs=156.8
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
||+++|+++.|++.....++|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER---PTSGSVLVDGTDLTLLSGKEL 77 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHHHH
Confidence 48899999999865000129999999999999999999999999999999999999 9999999998642
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhc
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al 223 (313)
.+.++|++|++..++ .+|+.+|+.+....++.........+.++++.++.. .++++..|||||+||++||+++
T Consensus 78 ~~~~~~i~~~~q~~~~~~--~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 155 (233)
T cd03258 78 RKARRRIGMIFQHFNLLS--SRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARAL 155 (233)
T ss_pred HHHHhheEEEccCcccCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 235899999965333 489999998765444332222344567788888743 4567789999999999999999
Q ss_pred ccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHH
Q 021380 224 GLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~ 281 (313)
+.+++++++|+|+..||.. +++.|.++.+ .+|++|||++++.. +++ |++++.|++.++
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 156 ANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred hcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999993 4445554432 24799999998765 444 788887876654
No 50
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-36 Score=266.31 Aligned_cols=180 Identities=16% Similarity=0.184 Sum_probs=145.1
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------CCe
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDV 151 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------~~~ 151 (313)
|+++|+++.|+++. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.
T Consensus 1 l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~ 73 (213)
T cd03259 1 LELKGLSKTYGSVR----ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER---PDSGEILIDGRDVTGVPPERRN 73 (213)
T ss_pred CeeeeeEEEeCCee----eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcCcCchhhcc
Confidence 46899999998766 9999999999999999999999999999999999999 9999999988642 245
Q ss_pred EEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCccE
Q 021380 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a~~ 229 (313)
++|++|++..++ .+|+.+|+.+.....+.......+.+.++++.++.. .++++.+||||||||++||++++.++++
T Consensus 74 i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~ 151 (213)
T cd03259 74 IGMVFQDYALFP--HLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSL 151 (213)
T ss_pred EEEEcCchhhcc--CCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 899999964333 479999998765443322222334567788888743 3567789999999999999999999999
Q ss_pred EEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 230 VIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 230 li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
+++|+|+..||. .+++.|.++.+ .+|++|||++++..
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~ 196 (213)
T cd03259 152 LLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALA 196 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHH
Confidence 999999999998 44455555432 25799999998764
No 51
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-36 Score=279.85 Aligned_cols=209 Identities=11% Similarity=0.138 Sum_probs=161.1
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhccc-CCCCceeeeCCCCC-----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKASSFDSQVKP----- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~-~p~~G~i~~~~~~~----- 148 (313)
|++|+++||++.|+.......+|+||||+|.+||++||+|+||||||||+++|+|+++.. .|++|+|.++|.+.
T Consensus 1 ~~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~ 80 (330)
T PRK15093 1 MPLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred CCeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence 568999999999953211223999999999999999999999999999999999998510 14899999998642
Q ss_pred -------CCeEEEEeccCCCCCcccCCcccCHHHHHHhc---CC--CC-CccHHHHHHHHHHhhcCC-----CccCCCCC
Q 021380 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR---GA--PW-TFNPLLLLNCLKNLRNQG-----SVYAPSFD 210 (313)
Q Consensus 149 -------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~---~~--~~-~~~~~~~~~~l~~l~~~~-----~~~~~~LS 210 (313)
.+.++|++|++....++.+|+.+++.+....+ +. .. ....+++.++|+.++... +.++.+||
T Consensus 81 ~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LS 160 (330)
T PRK15093 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT 160 (330)
T ss_pred HHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCC
Confidence 13599999997544455688988887543221 10 01 123456788899988542 56778999
Q ss_pred ccCCCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhcc
Q 021380 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHIST 275 (313)
Q Consensus 211 gGekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~ 275 (313)
|||+|||+||+|++.++++|++|+|+..||. .+++.|.++.+ .+||||||++++.. |++ |++++.
T Consensus 161 gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~ 240 (330)
T PRK15093 161 EGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVET 240 (330)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999998 44555555443 25799999999976 554 999999
Q ss_pred CChhHHHH
Q 021380 276 GKPPDVAK 283 (313)
Q Consensus 276 G~~~e~~~ 283 (313)
|++.++..
T Consensus 241 g~~~~i~~ 248 (330)
T PRK15093 241 APSKELVT 248 (330)
T ss_pred CCHHHHHh
Confidence 99888754
No 52
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.9e-36 Score=269.06 Aligned_cols=197 Identities=17% Similarity=0.234 Sum_probs=156.4
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------CC
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 150 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------~~ 150 (313)
+|+++||++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+. .+
T Consensus 2 ~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 74 (239)
T cd03296 2 SIEVRNVSKRFGDFV----ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER---PDSGTILFGGEDATDVPVQER 74 (239)
T ss_pred EEEEEeEEEEECCEE----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccc
Confidence 589999999998766 9999999999999999999999999999999999999 9999999988542 24
Q ss_pred eEEEEeccCCCCCcccCCcccCHHHHHHhcCC----CCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcc
Q 021380 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGA----PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 151 ~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~----~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~ 224 (313)
.++|++|++..++ .+|+.+|+.+.....+. ......+.+.++++.++.. .++++.+|||||+||++||++++
T Consensus 75 ~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~ 152 (239)
T cd03296 75 NVGFVFQHYALFR--HMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALA 152 (239)
T ss_pred ceEEEecCCcccC--CCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHh
Confidence 5899999965332 47999999876443322 1111234566778888743 45677899999999999999999
Q ss_pred cCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 225 LQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 225 ~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
.+++++++|+|+..||.. +++.|.++.+ .+|++|||++.+.. |++ |+++..|+++++.
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 153 VEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 999999999999999994 4444444432 24799999998765 444 7888888877653
No 53
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=6.5e-36 Score=279.33 Aligned_cols=207 Identities=15% Similarity=0.142 Sum_probs=163.4
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC---CceeeeCCCCC--
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASSFDSQVKP-- 148 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~---~G~i~~~~~~~-- 148 (313)
.+++|+++||++.|+.......+|+||||+|++||++||+|+||||||||+++|+|+++ |+ +|+|.++|.+.
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~---p~~~~sG~I~~~G~~i~~ 85 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA---ANGRIGGSATFNGREILN 85 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCCCCeEEEECCEECCc
Confidence 45689999999999632112339999999999999999999999999999999999998 75 99999999652
Q ss_pred ----------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcC-CCCCccHHHHHHHHHHhhcC-----CCccCCCCCcc
Q 021380 149 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHG 212 (313)
Q Consensus 149 ----------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~l~~~-----~~~~~~~LSgG 212 (313)
.+.++|++|++....++.+++.+++.+....++ .......+++.++|+.++.. .+.++.+||||
T Consensus 86 ~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG 165 (330)
T PRK09473 86 LPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGG 165 (330)
T ss_pred CCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHH
Confidence 136999999975444556899888876654432 22222345677888888743 24577899999
Q ss_pred CCCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCC
Q 021380 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 213 ekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~ 277 (313)
|+||++||++++.++++|++|+|+..||. .+++.|.++.+ .+||||||++++.. |++ |++++.|+
T Consensus 166 ~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~ 245 (330)
T PRK09473 166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGN 245 (330)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999 34444544433 25799999999875 554 99999999
Q ss_pred hhHHHH
Q 021380 278 PPDVAK 283 (313)
Q Consensus 278 ~~e~~~ 283 (313)
+.++..
T Consensus 246 ~~~i~~ 251 (330)
T PRK09473 246 ARDVFY 251 (330)
T ss_pred HHHHHh
Confidence 888764
No 54
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.5e-36 Score=284.42 Aligned_cols=190 Identities=16% Similarity=0.179 Sum_probs=157.0
Q ss_pred eEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------------CCeE
Q 021380 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------------PDVA 152 (313)
Q Consensus 85 ~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------------~~~i 152 (313)
|.|+++. +|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.+
T Consensus 1 ~~~~~~~----~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~---p~~G~I~i~G~~i~~~~~~~~~~~rr~~i 73 (363)
T TIGR01186 1 KKTGGKK----GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE---PTAGQIFIDGENIMKQSPVELREVRRKKI 73 (363)
T ss_pred CccCCce----eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHHHHHHhCcE
Confidence 4677776 9999999999999999999999999999999999999 9999999999652 3469
Q ss_pred EEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEE
Q 021380 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 153 ~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~l 230 (313)
+|++|+...++ ++|+.+|+.+.....+.+.....+++.++++.++. ..++++.+|||||||||+||+|++.++++|
T Consensus 74 ~~v~Q~~~l~~--~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iL 151 (363)
T TIGR01186 74 GMVFQQFALFP--HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDIL 151 (363)
T ss_pred EEEECCCcCCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999965433 58999999988766655444445677888998884 356778899999999999999999999999
Q ss_pred EEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 231 IVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 231 i~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++|+|+..||.. +.+.+.++.. .+||||||++++.. |++ |+++..|+++++..
T Consensus 152 LlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 152 LMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 999999999994 4444444432 25799999999876 554 89999999888754
No 55
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=4.9e-36 Score=273.04 Aligned_cols=199 Identities=13% Similarity=0.172 Sum_probs=158.0
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
+++|+++||++.|+++. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 5 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~ 77 (269)
T PRK11831 5 ANLVDMRGVSFTRGNRC----IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA---PDHGEILFDGENIPAMSRS 77 (269)
T ss_pred cceEEEeCeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccChh
Confidence 46899999999998766 9999999999999999999999999999999999999 9999999998542
Q ss_pred -----CCeEEEEeccCCCCCcccCCcccCHHHHHHhc-CCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhh
Q 021380 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 149 -----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la 220 (313)
.+.++|++|+...++ .+|+.+|+.+..... ..........+.++++.++.. .++++.+||||||||++||
T Consensus 78 ~~~~~~~~i~~v~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~la 155 (269)
T PRK11831 78 RLYTVRKRMSMLFQSGALFT--DMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALA 155 (269)
T ss_pred hHHHHhhcEEEEecccccCC--CCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 235899999964333 479999998754322 112122234566778888743 4667789999999999999
Q ss_pred hhcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 221 ILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 221 ~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
++++.+++++++|+|+..||.. +.+.|.++.. .+|++|||++++.. +++ |+++..|++.++.
T Consensus 156 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 156 RAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999994 4444554432 24799999998765 444 7888888877664
No 56
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1e-35 Score=245.46 Aligned_cols=185 Identities=16% Similarity=0.101 Sum_probs=158.3
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC---------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------- 147 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~--------- 147 (313)
+|++++++|..+.......+|++|+|.|++||.++|+||+|||||||+-+++|+.. |++|+|.+.|++
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~---~ssGeV~l~G~~L~~ldEd~r 82 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD---PSSGEVRLLGQPLHKLDEDAR 82 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC---CCCceEEEcCcchhhcCHHHH
Confidence 79999999999887777779999999999999999999999999999999999999 999999998875
Q ss_pred ---CCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhh
Q 021380 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 148 ---~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~a 222 (313)
+.+.+|+|||.....+ .||..||+..+..+.+.........+.++|+.+|.. ...++.+|||||+|||+||+|
T Consensus 83 A~~R~~~vGfVFQSF~Lip--~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARA 160 (228)
T COG4181 83 AALRARHVGFVFQSFHLIP--NLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARA 160 (228)
T ss_pred HHhhccceeEEEEeeeccc--cchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHH
Confidence 3457999999944333 599999999999988755445566788999999954 456777999999999999999
Q ss_pred cccCccEEEEcCcccccChhhHHHHHHhh----cC----eEEEEcChHHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMF----DE----KWFIEVDLDTAMQ 266 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE~~~~~l~~l~----~~----~i~vtHd~~~~~~ 266 (313)
++..+++|+.|+|+=-||-.+-+.+.+++ .+ .|+||||...+.+
T Consensus 161 fa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R 212 (228)
T COG4181 161 FAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR 212 (228)
T ss_pred hcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh
Confidence 99999999999999999985555444443 22 4799999999887
No 57
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=5.1e-36 Score=264.21 Aligned_cols=181 Identities=13% Similarity=0.065 Sum_probs=146.1
Q ss_pred eEEEccceeEccc--cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 77 VVEARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~--~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
||+++|+++.|++ +. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~ 73 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQP----ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK---PTRGKIRFNGQDLTRLRGR 73 (216)
T ss_pred CeEEEEEEEEecCCCee----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEehhhcChh
Confidence 4889999999964 34 8999999999999999999999999999999999999 9999999998642
Q ss_pred -----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhh
Q 021380 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 149 -----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~ 221 (313)
.+.++|++|++..++ .+|+.+|+.+.....+.......+++.++++.++. ..++.+.+|||||+||++||+
T Consensus 74 ~~~~~~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar 151 (216)
T TIGR00960 74 EIPFLRRHIGMVFQDHRLLS--DRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIAR 151 (216)
T ss_pred HHHHHHHhceEEecCccccc--cccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence 135899999964333 47999999887554433222234567788888874 346677899999999999999
Q ss_pred hcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 222 LVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 222 al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
+++.+++++++|+|+..||.. +.+.|.++.+ .+|++|||++++..
T Consensus 152 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~ 203 (216)
T TIGR00960 152 AIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVET 203 (216)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 999999999999999999994 4444444432 25799999998764
No 58
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=5.9e-36 Score=269.47 Aligned_cols=199 Identities=14% Similarity=0.175 Sum_probs=157.0
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
|+||+++||++.|+++. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 m~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~ 73 (250)
T PRK11264 1 MSAIEVKNLVKKFHGQT----VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ---PEAGTIRVGDITIDTARSL 73 (250)
T ss_pred CCcEEEeceEEEECCee----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccccc
Confidence 45799999999998766 9999999999999999999999999999999999999 9999999987532
Q ss_pred ----------CCeEEEEeccCCCCCcccCCcccCHHHHHHh-cCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCC
Q 021380 149 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ----------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekq 215 (313)
.+.++|++|+...++ .+|+.+|+.+.... .+.......+.+.++++.++.. .+.++.+|||||+|
T Consensus 74 ~~~~~~~~~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~q 151 (250)
T PRK11264 74 SQQKGLIRQLRQHVGFVFQNFNLFP--HRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQ 151 (250)
T ss_pred cchhhHHHHhhhhEEEEecCcccCC--CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHH
Confidence 235899999964333 47999999875332 2222222334567788888743 45677899999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhhH----HHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~~----~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~ 281 (313)
|++||++++.+++++++|+|+..||.... +.|.++.+ .+|++|||++.+.. |++ |+++..|+++++
T Consensus 152 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 231 (250)
T PRK11264 152 RVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKAL 231 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999443 44444433 24799999998765 444 888888887766
Q ss_pred H
Q 021380 282 A 282 (313)
Q Consensus 282 ~ 282 (313)
.
T Consensus 232 ~ 232 (250)
T PRK11264 232 F 232 (250)
T ss_pred h
Confidence 4
No 59
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-36 Score=277.50 Aligned_cols=202 Identities=12% Similarity=0.121 Sum_probs=161.7
Q ss_pred eEEEccceeEccccc-cccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~-~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
+|+++||++.|++.. ....+|+|+||+|.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~~~~~~~~~ 78 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL---PDTGTIEWIFKDEKNKKKTK 78 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEEeceecccccccc
Confidence 589999999997531 11238999999999999999999999999999999999999 9999999975421
Q ss_pred -------------------------CCeEEEEeccCC-CCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC-
Q 021380 149 -------------------------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ- 201 (313)
Q Consensus 149 -------------------------~~~i~~v~q~~~-~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~- 201 (313)
.+.++|++|++. .++ ..|+.+|+.++....+.+.....+++.++++.++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~--~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~ 156 (305)
T PRK13651 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF--EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDE 156 (305)
T ss_pred cccccccccccccccccccchHHHHHhceEEEeeCcccccc--cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh
Confidence 235899999852 233 269999999876665554444456678888988853
Q ss_pred --CCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH
Q 021380 202 --GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL 269 (313)
Q Consensus 202 --~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi 269 (313)
.++++.+||||||||++||++++.++++|++|+|+..||.. +++.|.++.+ .+|++|||++.+.. |++
T Consensus 157 ~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~ 236 (305)
T PRK13651 157 SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTI 236 (305)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEE
Confidence 46778899999999999999999999999999999999993 4444444433 24799999998766 555
Q ss_pred ----hhhhccCChhHHHH
Q 021380 270 ----KRHISTGKPPDVAK 283 (313)
Q Consensus 270 ----gr~v~~G~~~e~~~ 283 (313)
|++++.|.+.++..
T Consensus 237 vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 237 FFKDGKIIKDGDTYDILS 254 (305)
T ss_pred EEECCEEEEECCHHHHhc
Confidence 89999999888654
No 60
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-36 Score=267.43 Aligned_cols=186 Identities=12% Similarity=0.048 Sum_probs=147.3
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
++|+++||++.|++......+|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~ 80 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT---PTSGDVIFNGQPMSKLSSAA 80 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCCHHH
Confidence 479999999999752111228999999999999999999999999999999999999 9999999998542
Q ss_pred -----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhh
Q 021380 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 149 -----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~ 221 (313)
.+.++|++|+...++ .+|+.+|+.+.....+.......+++.++++.++.. .+..+.+||||||||++||+
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~ 158 (233)
T PRK11629 81 KAELRNQKLGFIYQFHHLLP--DFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIAR 158 (233)
T ss_pred HHHHHhccEEEEecCcccCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHH
Confidence 135899999964333 479999998765433322222345677888888843 35677799999999999999
Q ss_pred hcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 222 LVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 222 al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
+++.+++++++|+|+..||.. +++.|.++.+ .+|++|||++++..
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~ 211 (233)
T PRK11629 159 ALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKR 211 (233)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 999999999999999999993 4445555432 24799999998765
No 61
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.8e-36 Score=284.19 Aligned_cols=183 Identities=16% Similarity=0.222 Sum_probs=149.1
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------------CCeEEEEeccCCCCC
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------------PDVATVLPMDGFHLY 163 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------------~~~i~~v~q~~~~~~ 163 (313)
+|+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+. .+.++|++|+...++
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~---p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~ 119 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE---PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMP 119 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCC
Confidence 7999999999999999999999999999999999999 9999999998642 135999999965433
Q ss_pred cccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccCh
Q 021380 164 LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (313)
Q Consensus 164 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE 241 (313)
.+|+.+|+.+.....+.+.....+++.++++.++. ..++++.+||||||||++||++++.++++|++|+|+..||.
T Consensus 120 --~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~ 197 (400)
T PRK10070 120 --HMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDP 197 (400)
T ss_pred --CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCH
Confidence 48999999987665554433334567788888884 34677889999999999999999999999999999999999
Q ss_pred h----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 242 G----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 242 ~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
. +++.|.++.. .+|++|||++++.. |++ |+++..|+++++..
T Consensus 198 ~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~ 254 (400)
T PRK10070 198 LIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILN 254 (400)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHh
Confidence 4 4444444432 25799999999876 554 88888888877643
No 62
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-36 Score=275.21 Aligned_cols=202 Identities=11% Similarity=0.072 Sum_probs=161.1
Q ss_pred eEEEccceeEcccccc-ccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~-~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
.|+++||++.|++... ...+|+||||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ---PTSGTVTIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 4899999999974210 1239999999999999999999999999999999999999 9999999998643
Q ss_pred -----CCeEEEEeccCC-CCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchh
Q 021380 149 -----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 149 -----~~~i~~v~q~~~-~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~l 219 (313)
.+.++|++|++. .++ ..|+.+|+.+.....+.+.....+++.++++.++.. .++++.+|||||+||++|
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~l 156 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQLF--EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAI 156 (290)
T ss_pred hHHHHHhhEEEEeeCchhhhh--hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHH
Confidence 135899999852 233 269999998876554443333345677888888853 366788999999999999
Q ss_pred hhhcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 220 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 220 a~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
|++++.++++|++|+|+..||. .+++.+.++.+ .+|++|||++++.. |++ |++++.|++.++..
T Consensus 157 AraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 157 AGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999 44445555432 25799999999876 555 88888998887653
No 63
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=6.7e-36 Score=248.78 Aligned_cols=197 Identities=15% Similarity=0.137 Sum_probs=159.9
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------CC
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 150 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------~~ 150 (313)
||.+++|.+.|+..+ =.++++|+.||+++|+||+|||||||+++|+|++. |.+|+|+++|.+. .+
T Consensus 1 ~l~L~~V~~~y~~~~------~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~---P~~G~i~i~g~d~t~~~P~~R 71 (231)
T COG3840 1 MLALDDVRFSYGHLP------MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET---PASGEILINGVDHTASPPAER 71 (231)
T ss_pred CccccceEEeeCcce------EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccC---CCCceEEEcCeecCcCCcccC
Confidence 467899999998754 25788999999999999999999999999999999 9999999999762 34
Q ss_pred eEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcccCcc
Q 021380 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~~a~ 228 (313)
-+.++||+...+. ++||.+|+.++..-.-.-...+.+++..++..+| ...++.+.+|||||||||++|++++.+-.
T Consensus 72 PVSmlFQEnNLFa--HLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~P 149 (231)
T COG3840 72 PVSMLFQENNLFA--HLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQP 149 (231)
T ss_pred Chhhhhhccccch--hhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCC
Confidence 5899999965433 6999999987643111112456778889999998 34567788999999999999999999999
Q ss_pred EEEEcCcccccChhhHHHHH----HhhcC----eEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 229 VVIVDGNYLFLDGGVWKDVS----SMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 229 ~li~d~~~llLDE~~~~~l~----~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
++++|+|+.-||+.++.++. +++++ .+||||.++.+.+ |++ ||+.+.|...++...
T Consensus 150 ilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 150 ILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred eEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 99999999999995555444 44443 4799999999887 555 999999988887643
No 64
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=5.2e-36 Score=266.06 Aligned_cols=193 Identities=14% Similarity=0.108 Sum_probs=152.9
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHh-----cccCCCCceeeeCCCCC----
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI-----NKIWPQKASSFDSQVKP---- 148 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll-----~~~~p~~G~i~~~~~~~---- 148 (313)
|+++||++.|+++. +|+|+||+|.+|++++|+||||||||||+++|+|++ + |++|+|.++|.+.
T Consensus 1 i~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~---~~~G~i~~~g~~~~~~~ 73 (227)
T cd03260 1 IELRDLNVYYGDKH----ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA---PDEGEVLLDGKDIYDLD 73 (227)
T ss_pred CEEEEEEEEcCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC---CCCeEEEECCEEhhhcc
Confidence 47899999998776 999999999999999999999999999999999999 8 9999999998642
Q ss_pred ------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCC-ccHHHHHHHHHHhhcCC--Ccc--CCCCCccCCCcc
Q 021380 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQG--SVY--APSFDHGVGDPV 217 (313)
Q Consensus 149 ------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~-~~~~~~~~~l~~l~~~~--~~~--~~~LSgGekqRv 217 (313)
.+.++|++|+... + .+|+.+|+.+.....+.... ...+++.++++.++... +.. +.+|||||+||+
T Consensus 74 ~~~~~~~~~i~~~~q~~~~-~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv 150 (227)
T cd03260 74 VDVLELRRRVGMVFQKPNP-F--PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRL 150 (227)
T ss_pred hHHHHHHhhEEEEecCchh-c--cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHH
Confidence 2358999999643 3 37999999876544332211 12455677888887432 344 479999999999
Q ss_pred hhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhH
Q 021380 218 EDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 218 ~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e 280 (313)
+||++++.+++++++|+|+..||.. +++.|.++.+ .+|++|||++++.. |++ |++++.|++.+
T Consensus 151 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 151 CLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 9999999999999999999999993 4444544443 35799999998765 444 77777776544
No 65
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-35 Score=273.20 Aligned_cols=202 Identities=14% Similarity=0.114 Sum_probs=159.4
Q ss_pred eEEEccceeEccccc-cccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~-~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
+|+++||++.|++.. ....+|+|+||+|.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK---PSSGTITIAGYHITPETGNK 78 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 689999999997421 01128999999999999999999999999999999999999 9999999998642
Q ss_pred -----CCeEEEEeccCC-CCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchh
Q 021380 149 -----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 149 -----~~~i~~v~q~~~-~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~l 219 (313)
...++|++|++. .++ .+|+.+|+.+....++.......+++.++++.++.. .++++.+||||||||++|
T Consensus 79 ~~~~~~~~ig~v~q~~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~l 156 (287)
T PRK13641 79 NLKKLRKKVSLVFQFPEAQLF--ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAI 156 (287)
T ss_pred hHHHHHhceEEEEeChhhhhc--cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHH
Confidence 135899999852 223 379999998765444332223344677888888853 367788999999999999
Q ss_pred hhhcccCccEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 220 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 220 a~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
|++++.++++|++|+|+..||. .+.+.|.++.+ .+|++|||++.+.. |++ |+++..|++.++..
T Consensus 157 aral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 157 AGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999 34445544432 24799999999876 554 88888898887653
No 66
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.1e-35 Score=265.61 Aligned_cols=199 Identities=17% Similarity=0.124 Sum_probs=158.4
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------- 149 (313)
+|+++|+++.|+++. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~i~~~~~~~~ 73 (236)
T TIGR03864 1 ALEVAGLSFAYGARR----ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV---AQEGQISVAGHDLRRAPRAAL 73 (236)
T ss_pred CEEEEeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcccCChhhh
Confidence 488999999998766 9999999999999999999999999999999999999 99999999886421
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a 227 (313)
+.++|++|+...++ .+|+.+|+.+....++.......+.+.++++.++.. .++++.+|||||+||++||++++.++
T Consensus 74 ~~i~~~~q~~~~~~--~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p 151 (236)
T TIGR03864 74 ARLGVVFQQPTLDL--DLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRP 151 (236)
T ss_pred hhEEEeCCCCCCcc--cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 35899999864333 479999988765443322222344567788888743 46677899999999999999999999
Q ss_pred cEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH--HHH----hhhhccCChhHHHHH
Q 021380 228 KVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 228 ~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~~ 284 (313)
+++++|+|+..||. .+.+.|.++.+ .+|++|||++.+.. |++ |+++..|+++++...
T Consensus 152 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 152 ALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999 44455555542 24799999998865 443 788788877666543
No 67
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=7.5e-36 Score=265.82 Aligned_cols=195 Identities=19% Similarity=0.216 Sum_probs=154.5
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---------
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--------- 148 (313)
|+++||++.|+++. +|+++||++.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~ 73 (232)
T cd03218 1 LRAENLSKRYGKRK----VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK---PDSGKILLDGQDITKLPMHKRA 73 (232)
T ss_pred CeEEEEEEEeCCEE----eeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccCCHhHHH
Confidence 46899999998766 9999999999999999999999999999999999999 9999999988542
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~ 226 (313)
...++|++|++..++ .+|+.+|+.+....++.........+.++++.++.. .+..+..|||||+||++||++++.+
T Consensus 74 ~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 151 (232)
T cd03218 74 RLGIGYLPQEASIFR--KLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATN 151 (232)
T ss_pred hccEEEecCCccccc--cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 135899999964333 479999998765443322222334567788887743 4667789999999999999999999
Q ss_pred ccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHH
Q 021380 227 HKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 227 a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~ 281 (313)
++++++|+|+..||.. +.+.+.++.. .+|++|||++.+.. |++ |+++..|+.+++
T Consensus 152 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 152 PKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 9999999999999994 4444444432 24799999988776 444 787777876665
No 68
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.1e-35 Score=281.47 Aligned_cols=194 Identities=15% Similarity=0.135 Sum_probs=157.9
Q ss_pred ccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCC----CC--------
Q 021380 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV----KP-------- 148 (313)
Q Consensus 81 ~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~----~~-------- 148 (313)
.++.+.|+... +|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|. +.
T Consensus 28 ~~~~~~~g~~~----~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~---p~~G~I~idG~~~~~~i~~~~~~~l 100 (382)
T TIGR03415 28 EEILDETGLVV----GVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP---VSRGSVLVKDGDGSIDVANCDAATL 100 (382)
T ss_pred HHHHHhhCCEE----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEecccccccCCHHHH
Confidence 45667777666 9999999999999999999999999999999999999 99999999984 21
Q ss_pred ----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhh
Q 021380 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~a 222 (313)
.+.++|++|+...++ .+|+.+|+.++....+.+......++.++++.++. ..+.++.+|||||+||++||++
T Consensus 101 ~~~r~~~i~~vfQ~~~l~p--~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARA 178 (382)
T TIGR03415 101 RRLRTHRVSMVFQKFALMP--WLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARA 178 (382)
T ss_pred HHHhcCCEEEEECCCcCCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 136999999964433 58999999988665554444445667888998884 3467788999999999999999
Q ss_pred cccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++.++++|++|+|+..||.. +++.|.++.+ .+||+|||++++.+ |++ |++++.|+++++..
T Consensus 179 La~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~ 254 (382)
T TIGR03415 179 FAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVL 254 (382)
T ss_pred HhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999994 4444444433 25799999999876 554 89999999888753
No 69
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=5.9e-36 Score=276.84 Aligned_cols=191 Identities=16% Similarity=0.206 Sum_probs=155.6
Q ss_pred eEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------CCeEEEEec
Q 021380 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PDVATVLPM 157 (313)
Q Consensus 85 ~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------~~~i~~v~q 157 (313)
|.|++.. +|+|+||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+. .+.++|++|
T Consensus 1 k~y~~~~----~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~~~q 73 (302)
T TIGR01188 1 KVYGDFK----AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR---PTSGTARVAGYDVVREPRKVRRSIGIVPQ 73 (302)
T ss_pred CeeCCee----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCHHHHHhhcEEecC
Confidence 4677666 9999999999999999999999999999999999999 9999999998653 235899999
Q ss_pred cCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEEEEcCc
Q 021380 158 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 235 (313)
Q Consensus 158 ~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~ 235 (313)
+...++ .+|+.+|+.+....++.......+++.++++.++. ..++++.+||||||||++||+|++.++++|++|+|
T Consensus 74 ~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 151 (302)
T TIGR01188 74 YASVDE--DLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEP 151 (302)
T ss_pred CCCCCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 964333 58999999887665554333334567788888884 34678889999999999999999999999999999
Q ss_pred ccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 236 YLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 236 ~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
+..||+ .+++.|.++.+ .+|++|||++++.. |++ |+++..|++.++...
T Consensus 152 t~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 152 TTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999 44455555433 24799999999876 544 889899998887654
No 70
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-35 Score=273.45 Aligned_cols=202 Identities=16% Similarity=0.123 Sum_probs=160.7
Q ss_pred eEEEccceeEcccccc-ccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~-~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
||+++||++.|+.... ...+|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 77 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ---PTEGKVTVGDIVVSSTSKQK 77 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 5899999999974210 1238999999999999999999999999999999999999 9999999998652
Q ss_pred -----CCeEEEEeccCC-CCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchh
Q 021380 149 -----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 149 -----~~~i~~v~q~~~-~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~l 219 (313)
.+.++|++|++. .++. .|+.+|+.+....++.+......++.++++.++.. .++.+..||||||||++|
T Consensus 78 ~~~~~~~~ig~v~q~~~~~l~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvai 155 (288)
T PRK13643 78 EIKPVRKKVGVVFQFPESQLFE--ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAI 155 (288)
T ss_pred cHHHHHhhEEEEecCcchhccc--chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHH
Confidence 235899999852 2232 59999999876655544333345677888888852 366778999999999999
Q ss_pred hhhcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 220 DILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 220 a~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
|++++.++++|++|+|+..||.. +++.+.++.+ .+|++|||++++.. |++ |+++..|++.++..
T Consensus 156 A~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 156 AGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred HHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 99999999999999999999994 3444444432 25799999998865 555 89999999888754
No 71
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=9.4e-36 Score=265.86 Aligned_cols=195 Identities=20% Similarity=0.178 Sum_probs=154.5
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---------
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--------- 148 (313)
|+++|+++.|++.. +|+++||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (236)
T cd03219 1 LEVRGLTKRFGGLV----ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR---PTSGSVLFDGEDITGLPPHEIA 73 (236)
T ss_pred CeeeeeEEEECCEE----EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEECCCCCHHHHH
Confidence 46899999998766 9999999999999999999999999999999999999 9999999998642
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCC----------CCccHHHHHHHHHHhhcC--CCccCCCCCccCCCc
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP----------WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDP 216 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~----------~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqR 216 (313)
...++|++|+...++ .+|+.+|+.+.....+.. .......+.++++.++.. .++++.+|||||+||
T Consensus 74 ~~~i~~v~q~~~l~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 151 (236)
T cd03219 74 RLGIGRTFQIPRLFP--ELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRR 151 (236)
T ss_pred hcCEEEEeccccccc--CCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHH
Confidence 134899999964333 479999998765433211 112234567788888743 456778999999999
Q ss_pred chhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHH
Q 021380 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 217 v~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~ 281 (313)
++||++++.+++++++|+|+..||. .+++.|.++.+ .+|++|||++++.. +++ |+++..|++.++
T Consensus 152 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 152 LEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 9999999999999999999999999 34455554432 25799999998866 444 777777877665
No 72
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-35 Score=266.58 Aligned_cols=199 Identities=17% Similarity=0.193 Sum_probs=157.2
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
|.+|+++||++.|+++. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~ 73 (241)
T PRK10895 1 MATLTAKNLAKAYKGRR----VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP---RDAGNIIIDDEDISLLPLH 73 (241)
T ss_pred CceEEEeCcEEEeCCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHH
Confidence 45799999999998766 9999999999999999999999999999999999999 9999999998542
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcC-CCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhh
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~a 222 (313)
...++|++|++..+. .+|+.+|+.+.....+ .........+.++++.++.. .+.++.+|||||+||++||++
T Consensus 74 ~~~~~~i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 151 (241)
T PRK10895 74 ARARRGIGYLPQEASIFR--RLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARA 151 (241)
T ss_pred HHHHhCeEEeccCCcccc--cCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHH
Confidence 235899999964333 4799999877543221 11122334567788887742 356778999999999999999
Q ss_pred cccCccEEEEcCcccccChhh----HHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE~~----~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
++.+++++++|+|+..||... ++.+.++.. .+|++|||++.+.. +++ |++++.|+++++.
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 152 LAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 999999999999999999843 344444432 24799999987765 443 8888888877664
No 73
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=9.1e-36 Score=261.95 Aligned_cols=180 Identities=14% Similarity=0.099 Sum_probs=145.3
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------CCe
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDV 151 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------~~~ 151 (313)
|+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.
T Consensus 1 i~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~v~~~g~~~~~~~~~~~~ 73 (213)
T cd03301 1 VELENVTKRFGNVT----ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE---PTSGRIYIGGRDVTDLPPKDRD 73 (213)
T ss_pred CEEEeeEEEECCee----eeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccce
Confidence 46899999998766 9999999999999999999999999999999999999 9999999988542 235
Q ss_pred EEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccE
Q 021380 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~ 229 (313)
++|++|+...++ .+|+.+|+.+.....+.......+++.++++.++. ..+.++.+|||||+||++||++++.++++
T Consensus 74 i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 151 (213)
T cd03301 74 IAMVFQNYALYP--HMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKV 151 (213)
T ss_pred EEEEecChhhcc--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 899999965332 47999999876544332222233456777888774 34667889999999999999999999999
Q ss_pred EEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 230 VIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 230 li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
+++|+|+..||.. +++.|.++.+ .+|++|||++++..
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~ 196 (213)
T cd03301 152 FLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMT 196 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 9999999999994 4455555432 25799999998765
No 74
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.2e-36 Score=261.78 Aligned_cols=180 Identities=14% Similarity=0.133 Sum_probs=146.3
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC----CCeEE
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----PDVAT 153 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~----~~~i~ 153 (313)
|+++|+++.|+++. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.++
T Consensus 1 l~~~~l~~~~~~~~----~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGRVT----ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL---PDSGEVLFDGKPLDIAARNRIG 73 (210)
T ss_pred CEEEEEEEEECCEE----EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCCchhHHHHccEE
Confidence 46899999998766 9999999999999999999999999999999999999 9999999998753 34689
Q ss_pred EEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCccEEE
Q 021380 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 154 ~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a~~li 231 (313)
|++|+...++ .+|+.+|+.+....++.+.....+.+.++++.++.. .+.++.+|||||+||++||++++.++++++
T Consensus 74 ~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~ll 151 (210)
T cd03269 74 YLPEERGLYP--KMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLI 151 (210)
T ss_pred EeccCCcCCc--CCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999964333 479999998765544433233345677788888743 356777999999999999999999999999
Q ss_pred EcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 232 VDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 232 ~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
+|+|+..||.. +.+.+.++.+ .++++|||.+++..
T Consensus 152 lDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~ 193 (210)
T cd03269 152 LDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEE 193 (210)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 99999999983 4444544432 25799999998754
No 75
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=7.9e-36 Score=263.27 Aligned_cols=185 Identities=14% Similarity=0.089 Sum_probs=147.6
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------C
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------P 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------~ 149 (313)
||+++|+++.|++......+|+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 77 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE---PDAGFATVDGFDVVKEPAEAR 77 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEEcccCHHHHH
Confidence 48899999999865111129999999999999999999999999999999999999 9999999998653 2
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a 227 (313)
+.++|++|++..+. .+|+.+|+.+....++.........+.++++.++.. .++++.+|||||+||++||++++.++
T Consensus 78 ~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 155 (218)
T cd03266 78 RRLGFVSDSTGLYD--RLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDP 155 (218)
T ss_pred hhEEEecCCcccCc--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCC
Confidence 45899999964333 479999998765544433223345677888888743 46678899999999999999999999
Q ss_pred cEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 228 KVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 228 ~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
++|++|+|+..||. .+.+.|.++.+ .+|++|||++++..
T Consensus 156 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~ 201 (218)
T cd03266 156 PVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVER 201 (218)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99999999999999 34445544432 25799999998764
No 76
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.3e-36 Score=249.52 Aligned_cols=201 Identities=16% Similarity=0.172 Sum_probs=170.0
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
++.|+++|+.|.||... +|++||++..+|+++.|||.+|||||||||||.=+.+ |+.|.|.++|...
T Consensus 4 ~~~l~v~dlHK~~G~~e----VLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~---P~~G~I~v~geei~~k~~~ 76 (256)
T COG4598 4 ENALEVEDLHKRYGEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSAGSIRVNGEEIRLKRDK 76 (256)
T ss_pred ccceehhHHHhhcccch----hhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC---CCCceEEECCeEEEeeeCC
Confidence 45799999999999988 9999999999999999999999999999999999998 9999999998541
Q ss_pred ---------------CCeEEEEeccCCCCCcccCCcccCHHHH-HHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCC
Q 021380 149 ---------------PDVATVLPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFD 210 (313)
Q Consensus 149 ---------------~~~i~~v~q~~~~~~~~~ltv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LS 210 (313)
+.+.+++||+ |+++. +||+.+|+... ....+.++....+++..+|.++|. ..+.++..||
T Consensus 77 ~G~l~~ad~~q~~r~Rs~L~mVFQ~-FNLWs-HmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LS 154 (256)
T COG4598 77 DGQLKPADKRQLQRLRTRLGMVFQH-FNLWS-HMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLS 154 (256)
T ss_pred CCCeeeCCHHHHHHHHHHhhHhhhh-cchhH-HHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccC
Confidence 1237899999 45443 69999997764 344567777778888999999994 4456777999
Q ss_pred ccCCCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHHH---HHH----hhhhccC
Q 021380 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTG 276 (313)
Q Consensus 211 gGekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rvi----gr~v~~G 276 (313)
|||+||++||+|++..+.++++|+|+.-||+ +++..+.++..+ .++|||.+..+.. .++ |.+-+.|
T Consensus 155 GGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G 234 (256)
T COG4598 155 GGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEG 234 (256)
T ss_pred chHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccC
Confidence 9999999999999999999999999999999 566666666655 4799999999877 555 8888899
Q ss_pred ChhHHHHH
Q 021380 277 KPPDVAKW 284 (313)
Q Consensus 277 ~~~e~~~~ 284 (313)
+|+++...
T Consensus 235 ~P~qvf~n 242 (256)
T COG4598 235 PPEQVFGN 242 (256)
T ss_pred ChHHHhcC
Confidence 99988653
No 77
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-35 Score=271.17 Aligned_cols=197 Identities=17% Similarity=0.153 Sum_probs=158.0
Q ss_pred eEEEccceeEcc-ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~-~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
+|+++||++.|+ +.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 76 (274)
T PRK13647 4 IIEVEDLHFRYKDGTK----ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL---PQRGRVKVMGREVNAENEKW 76 (274)
T ss_pred eEEEEEEEEEeCCCCe----eeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEECCCCCHHH
Confidence 799999999996 444 9999999999999999999999999999999999999 9999999998653
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhccc
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
...++|++|++..... .+|+.+|+.+.....+........++.++++.++. ..++++.+|||||+||++||++++.
T Consensus 77 ~~~~i~~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~ 155 (274)
T PRK13647 77 VRSKVGLVFQDPDDQVF-SSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAM 155 (274)
T ss_pred HHhhEEEEecChhhhhc-cCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 2358999998532222 36999999876544333322234556778888874 3566788999999999999999999
Q ss_pred CccEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHH
Q 021380 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 226 ~a~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~ 281 (313)
+++++++|+|+..||. .+++.|.++.+ .+|++|||++++.+ |++ |++++.|.++++
T Consensus 156 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 156 DPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999 44455555433 24799999999865 544 888888887654
No 78
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-35 Score=264.96 Aligned_cols=200 Identities=14% Similarity=0.051 Sum_probs=158.0
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCceeeeCCCCC-
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~i~~~~~~~- 148 (313)
|++|+++||++.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~i~ 73 (250)
T PRK14247 1 MNKIEIRDLKVSFGQVE----VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIE---LYPEARVSGEVYLDGQDIF 73 (250)
T ss_pred CceEEEEeeEEEECCee----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCCCCceEEEECCEECC
Confidence 56899999999998766 9999999999999999999999999999999999986 5 699999998642
Q ss_pred -------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCC--CCCccHHHHHHHHHHhhcC------CCccCCCCCccC
Q 021380 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 213 (313)
Q Consensus 149 -------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~l~~~------~~~~~~~LSgGe 213 (313)
.+.++|++|++..++ .+|+.+|+.+.....+. ......+.+.++++.++.. .+..+.+|||||
T Consensus 74 ~~~~~~~~~~i~~v~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~ 151 (250)
T PRK14247 74 KMDVIELRRRVQMVFQIPNPIP--NLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQ 151 (250)
T ss_pred cCCHHHHhccEEEEeccCccCC--CCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHH
Confidence 245899999964333 48999999876443221 1112234567788887742 356778999999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhH
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e 280 (313)
+||++||++++.+++++++|+|+..||.. +++.|.++.. .+|++|||++++.. |++ |++++.|++.+
T Consensus 152 ~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14247 152 QQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTRE 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHH
Confidence 99999999999999999999999999994 4444444432 24799999998765 544 88888888877
Q ss_pred HHH
Q 021380 281 VAK 283 (313)
Q Consensus 281 ~~~ 283 (313)
+..
T Consensus 232 ~~~ 234 (250)
T PRK14247 232 VFT 234 (250)
T ss_pred HHc
Confidence 643
No 79
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.9e-35 Score=260.78 Aligned_cols=179 Identities=16% Similarity=0.128 Sum_probs=144.7
Q ss_pred EEEccceeEccc----cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----
Q 021380 78 VEARCMDEVYDA----LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 78 l~v~~ls~~y~~----~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~----- 148 (313)
|+++||++.|++ +. +|+++||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~~~~~----il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~ 73 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQ----ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PTSGEVRVDGTDISKLSE 73 (218)
T ss_pred CeEeeeEEEecCCCccee----EEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC---CCceeEEECCEehhhcch
Confidence 468999999976 44 9999999999999999999999999999999999999 9999999988542
Q ss_pred -------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchh
Q 021380 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 149 -------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~l 219 (313)
.+.++|++|++..++ .+|+.+|+.+.....+.......+.+.++++.++.. .++.+.+||||||||++|
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 151 (218)
T cd03255 74 KELAAFRRRHIGFVFQSFNLLP--DLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAI 151 (218)
T ss_pred hHHHHHHhhcEEEEeeccccCC--CCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHH
Confidence 235899999965333 479999998865544332222334577888888743 356778999999999999
Q ss_pred hhhcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHH
Q 021380 220 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAM 265 (313)
Q Consensus 220 a~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~ 265 (313)
|++++.+++++++|+|+..||. .+.+.|.++.+ .+|++|||++++.
T Consensus 152 a~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 205 (218)
T cd03255 152 ARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE 205 (218)
T ss_pred HHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh
Confidence 9999999999999999999999 44555555543 2479999998864
No 80
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.9e-35 Score=284.98 Aligned_cols=206 Identities=18% Similarity=0.220 Sum_probs=173.1
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC----CceeeeCCCC----
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ----KASSFDSQVK---- 147 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~----~G~i~~~~~~---- 147 (313)
++|+|+||++.|........+++||||+|.+||++||+|.|||||||+++.|.|+++ +. +|+|.++|.+
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~---~~~~~~~G~I~~~g~dl~~l 80 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLP---EGGRITSGEVILDGRDLLGL 80 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCC---CCCcccceEEEECCcchhcC
Confidence 489999999999765434459999999999999999999999999999999999998 55 8999999964
Q ss_pred --------CCCeEEEEeccCCCCCcccCCcccCHHHHHHhcC-CCCCccHHHHHHHHHHhhcC--C--CccCCCCCccCC
Q 021380 148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQ--G--SVYAPSFDHGVG 214 (313)
Q Consensus 148 --------~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~l~~~--~--~~~~~~LSgGek 214 (313)
..+.++|+||+++..+++.+|+.+.+......++ ....+..+++.++|+.++.. . +.++++||||||
T Consensus 81 ~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~r 160 (539)
T COG1123 81 SEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMR 160 (539)
T ss_pred CHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHH
Confidence 2357999999998888888899888887766554 33455667788999999832 2 347889999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccCChh
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~~~ 279 (313)
|||.||+|++.++++|+.|+|+--||. ++++.|+++.++ .||||||+.++.+ |++ |++++.|+++
T Consensus 161 QRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~ 240 (539)
T COG1123 161 QRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTE 240 (539)
T ss_pred HHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHH
Confidence 999999999999999999999999999 455555555533 4799999999988 665 9999999999
Q ss_pred HHHHH
Q 021380 280 DVAKW 284 (313)
Q Consensus 280 e~~~~ 284 (313)
+++..
T Consensus 241 ~i~~~ 245 (539)
T COG1123 241 EILSN 245 (539)
T ss_pred HHHhc
Confidence 99875
No 81
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-35 Score=264.28 Aligned_cols=197 Identities=18% Similarity=0.171 Sum_probs=155.6
Q ss_pred EEEccceeEccc-cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~-~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
|+++||++.|++ .. +|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 73 (241)
T cd03256 1 IEVENLSKTYPNGKK----ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE---PTSGSVLIDGTDINKLKGKAL 73 (241)
T ss_pred CEEeeEEEecCCccE----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEeccccCHhHH
Confidence 468999999986 55 9999999999999999999999999999999999999 9999999998642
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHh--------cCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCC
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR--------RGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~--------~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekq 215 (313)
.+.++|++|+...++ .+|+.+|+.+.... .+.......+++.++++.++. ..+.++.+|||||+|
T Consensus 74 ~~~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 151 (241)
T cd03256 74 RQLRRQIGMIFQQFNLIE--RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQ 151 (241)
T ss_pred HHHHhccEEEcccCcccc--cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHH
Confidence 135899999964333 47999998764321 111112234556778888874 346678899999999
Q ss_pred cchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e 280 (313)
|++||++++.+++++++|+|+..||. .+++.|.++.+ .+|++|||++++.. +++ |+++..|++.+
T Consensus 152 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (241)
T cd03256 152 RVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAE 231 (241)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHH
Confidence 99999999999999999999999999 44455555432 24799999999875 444 88888888777
Q ss_pred HHH
Q 021380 281 VAK 283 (313)
Q Consensus 281 ~~~ 283 (313)
+..
T Consensus 232 ~~~ 234 (241)
T cd03256 232 LTD 234 (241)
T ss_pred hhH
Confidence 643
No 82
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-35 Score=269.88 Aligned_cols=201 Identities=14% Similarity=0.110 Sum_probs=160.3
Q ss_pred CCeEEEccceeEcc-ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC----
Q 021380 75 IPVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~-~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~---- 149 (313)
|.+|+++||++.|+ +.. +|+|+||+|.+|+++||+|+||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 1 ~~~l~~~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~ 73 (277)
T PRK13652 1 MHLIETRDLCYSYSGSKE----ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK---PTSGSVLIRGEPITKENI 73 (277)
T ss_pred CceEEEEEEEEEeCCCCc----eeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCH
Confidence 56899999999995 444 8999999999999999999999999999999999999 99999999986432
Q ss_pred ----CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhc
Q 021380 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 150 ----~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al 223 (313)
..++|++|++..... ..|+.+|+.+.....+.......+.+.++++.++. ..++.+..|||||+||++||+++
T Consensus 74 ~~~~~~i~~v~q~~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL 152 (277)
T PRK13652 74 REVRKFVGLVFQNPDDQIF-SPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVI 152 (277)
T ss_pred HHHHhheEEEecCcccccc-cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 358999999532122 36999999876544333322233456778888774 34677889999999999999999
Q ss_pred ccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
+.++++|++|+|+..||. .+++.+.++.. .+|++|||++++.. |++ |+++..|+++++..
T Consensus 153 ~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 153 AMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 999999999999999998 44455555433 24799999999865 554 89999999888754
No 83
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-35 Score=265.21 Aligned_cols=196 Identities=15% Similarity=0.153 Sum_probs=156.5
Q ss_pred EEEccceeEccc-cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~-~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
|+++||++.|++ .. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 73 (242)
T cd03295 1 IEFENVTKRYGGGKK----AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE---PTSGEIFIDGEDIREQDPVEL 73 (242)
T ss_pred CEEEEEEEEeCCcce----EeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCeEcCcCChHHh
Confidence 468999999987 55 9999999999999999999999999999999999999 9999999998642
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC----CCccCCCCCccCCCcchhhhhcc
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~LSgGekqRv~la~al~ 224 (313)
...++|++|++..++ .+|+.+|+.+.....+.......+.+.++++.++.. .+.++.+|||||+||++||++++
T Consensus 74 ~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 74 RRKIGYVIQQIGLFP--HMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred hcceEEEccCccccC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 235899999965433 479999998765443332222345677888888854 35677899999999999999999
Q ss_pred cCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 225 LQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 225 ~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
.+++++++|+|+..||.. +.+.|.++.+ .+|++|||.+.+.. +++ |+++..|++.++.
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999994 4444554432 24799999998765 444 8888888776653
No 84
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-35 Score=270.22 Aligned_cols=199 Identities=17% Similarity=0.134 Sum_probs=156.4
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
||+++||++.|+++. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ml~~~~l~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~ 73 (271)
T PRK13638 1 MLATSDLWFRYQDEP----VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR---PQKGAVLWQGKPLDYSKRGLL 73 (271)
T ss_pred CeEEEEEEEEcCCcc----cccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCccEEEECCEEcccccCCHH
Confidence 489999999998766 9999999999999999999999999999999999999 9999999998652
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcc
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~ 224 (313)
.+.++|++|++..... ..++.+|+.+.....+.........+.++++.++. ..+.++.+|||||+||++||++++
T Consensus 74 ~~~~~i~~v~q~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~ 152 (271)
T PRK13638 74 ALRQQVATVFQDPEQQIF-YTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALV 152 (271)
T ss_pred HHHhheEEEeeChhhccc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHH
Confidence 1358999998532222 24678888775444433222223456677887773 346678899999999999999999
Q ss_pred cCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 225 LQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 225 ~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
.++++|++|+|+..||.. +.+.|.++.. .+|++|||++++.. |++ |++++.|.+.++..
T Consensus 153 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (271)
T PRK13638 153 LQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999994 4444444432 24799999998865 444 88888888877643
No 85
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.5e-35 Score=262.03 Aligned_cols=193 Identities=16% Similarity=0.143 Sum_probs=151.8
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---------
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--------- 148 (313)
|+++||++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (222)
T cd03224 1 LEVENLNAGYGKSQ----ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP---PRSGSIRFDGRDITGLPPHERA 73 (222)
T ss_pred CEEeeEEeecCCee----EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCCCCHHHHH
Confidence 46899999998766 9999999999999999999999999999999999999 9999999998542
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---cCCCccCCCCCccCCCcchhhhhccc
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---NQGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---~~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
.+.++|++|+...++ .+|+.+|+.+....++ .......+.++++.++ ...+.++.+|||||+||++||++++.
T Consensus 74 ~~~i~~~~q~~~~~~--~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 149 (222)
T cd03224 74 RAGIGYVPEGRRIFP--ELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMS 149 (222)
T ss_pred hcCeEEeccccccCC--CCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhc
Confidence 235899999964333 4799999987654432 1122334556666663 33567788999999999999999999
Q ss_pred CccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHH
Q 021380 226 QHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 226 ~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~ 281 (313)
+++++++|+|+..||.. +++.|.++.+ .+|++|||++++.. +++ |+++..|++.++
T Consensus 150 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 150 RPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 99999999999999994 4445544432 24799999998765 443 777777766554
No 86
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.4e-35 Score=265.85 Aligned_cols=196 Identities=18% Similarity=0.197 Sum_probs=154.8
Q ss_pred eEEEccceeEcc-ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~-~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
||+++||++.|+ +.. +|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~~----il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQ----ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE---PSSGSILLEGTDITKLRGKK 73 (243)
T ss_pred CeEEEeeeeecCCCcc----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCccEEEECCEEhhhCCHHH
Confidence 488999999997 655 9999999999999999999999999999999999999 9999999998542
Q ss_pred ----CCeEEEEeccCCCCCcccCCcccCHHHHHHhc--------CCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCC
Q 021380 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--------GAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVG 214 (313)
Q Consensus 149 ----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~--------~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGek 214 (313)
.+.++|++|+...++ .+|+.+|+.+..... +.......+++.++++.++. ..+.++.+|||||+
T Consensus 74 ~~~~~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 151 (243)
T TIGR02315 74 LRKLRRRIGMIFQHYNLIE--RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQ 151 (243)
T ss_pred HHHHHhheEEEcCCCcccc--cccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHH
Confidence 234899999964333 479999987642111 11112234567778888874 34667789999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChh
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~ 279 (313)
||++||++++.+++++++|+|+..||. .+.+.|.++.+ .+|++|||++.+.. +++ |+++..|+++
T Consensus 152 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 231 (243)
T TIGR02315 152 QRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPS 231 (243)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHH
Confidence 999999999999999999999999998 34455555432 24799999998865 444 8888888877
Q ss_pred HH
Q 021380 280 DV 281 (313)
Q Consensus 280 e~ 281 (313)
++
T Consensus 232 ~~ 233 (243)
T TIGR02315 232 EL 233 (243)
T ss_pred Hh
Confidence 65
No 87
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.1e-35 Score=264.42 Aligned_cols=197 Identities=17% Similarity=0.196 Sum_probs=156.4
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
||+++|+++.|++.. +|+|+||++.+|+++||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~----il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 73 (240)
T PRK09493 1 MIEFKNVSKHFGPTQ----VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE---ITSGDLIVDGLKVNDPKVDER 73 (240)
T ss_pred CEEEEeEEEEECCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCChhHH
Confidence 488999999998766 9999999999999999999999999999999999999 9999999998542
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHHH-hcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhc
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al 223 (313)
.+.++|++|+...++ .+|+.+|+.+... ..+.......+.+.++++.++. ..++++..||+||+||++||+++
T Consensus 74 ~~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 74 LIRQEAGMVFQQFYLFP--HLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred HHhhceEEEecccccCC--CCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHH
Confidence 235899999864333 4799999977532 2222222234456778888874 34667789999999999999999
Q ss_pred ccCccEEEEcCcccccChhh----HHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 224 GLQHKVVIVDGNYLFLDGGV----WKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE~~----~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
+.+++++++|+|+..||... .+.|.++.+ .+|++|||++++.. |++ |+++..|++.++.
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 99999999999999999944 444444432 25799999999865 544 8888888877654
No 88
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-35 Score=264.53 Aligned_cols=199 Identities=13% Similarity=0.055 Sum_probs=156.7
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCceeeeCCCCC-
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~i~~~~~~~- 148 (313)
+.+|+++||++.|++.. +|+|+||+|.+|++++|+||||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 2 ~~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~~~~~~G~i~~~g~~i~ 74 (253)
T PRK14267 2 KFAIETVNLRVYYGSNH----VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLE---LNEEARVEGEVRLFGRNIY 74 (253)
T ss_pred cceEEEEeEEEEeCCee----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---cccCCCCceEEEECCEEcc
Confidence 56899999999998766 9999999999999999999999999999999999997 7 499999988643
Q ss_pred ---------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCC--CCCccHHHHHHHHHHhhc------CCCccCCCCCc
Q 021380 149 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLRN------QGSVYAPSFDH 211 (313)
Q Consensus 149 ---------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~l~~------~~~~~~~~LSg 211 (313)
...++|++|++..++ .+|+.+|+.+.....+. +.......+.++++.++. ..+.++..|||
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 152 (253)
T PRK14267 75 SPDVDPIEVRREVGMVFQYPNPFP--HLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSG 152 (253)
T ss_pred ccccChHHHhhceeEEecCCccCC--CCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCH
Confidence 135899999965333 47999999876543322 111223446677777763 24567779999
Q ss_pred cCCCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCCh
Q 021380 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKP 278 (313)
Q Consensus 212 GekqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~ 278 (313)
||+||++||++++.+++++++|+|+..||.. +.+.|.++.+ .+|++|||++++.. |++ |++++.|++
T Consensus 153 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 232 (253)
T PRK14267 153 GQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPT 232 (253)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999994 4444444432 25799999998765 444 888888887
Q ss_pred hHHH
Q 021380 279 PDVA 282 (313)
Q Consensus 279 ~e~~ 282 (313)
.++.
T Consensus 233 ~~~~ 236 (253)
T PRK14267 233 RKVF 236 (253)
T ss_pred HHHH
Confidence 7764
No 89
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=3.4e-35 Score=258.53 Aligned_cols=181 Identities=15% Similarity=0.110 Sum_probs=145.1
Q ss_pred eEEEccceeEcc-ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~-~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
||+++|+++.|+ +.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~~----il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVA----ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT---PSRGQVRIAGEDVNRLRGRQ 73 (214)
T ss_pred CEEEEeeeEEeCCCce----eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHHH
Confidence 488999999994 555 9999999999999999999999999999999999999 9999999988542
Q ss_pred ----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhh
Q 021380 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~a 222 (313)
.+.++|++|++..++ .+|+.+|+.+.....+.......+++.++++.++.. .++.+.+|||||+||++||++
T Consensus 74 ~~~~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a 151 (214)
T TIGR02673 74 LPLLRRRIGVVFQDFRLLP--DRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARA 151 (214)
T ss_pred HHHHHhheEEEecChhhcc--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 235899999964332 479999998765443322222345667888888743 356777999999999999999
Q ss_pred cccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
++.+++++++|+|+..||.. +.+.|.++.+ .+|++|||++++..
T Consensus 152 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~ 202 (214)
T TIGR02673 152 IVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDR 202 (214)
T ss_pred HhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 99999999999999999994 4444444432 24799999988764
No 90
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=3.9e-35 Score=263.82 Aligned_cols=196 Identities=12% Similarity=0.104 Sum_probs=156.7
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----CceeeeCCCCC---
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSFDSQVKP--- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~-----~G~i~~~~~~~--- 148 (313)
+|+++||++.|++.. +|+|+||+|++|++++|+|+||||||||+++|+|+++ |+ +|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~~~~~~G~i~~~g~~~~~~ 73 (247)
T TIGR00972 1 AIEIENLNLFYGEKE----ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND---LVPGVRIEGKVLFDGQDIYDK 73 (247)
T ss_pred CEEEEEEEEEECCee----eecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceEEEECCEEcccc
Confidence 488999999998766 9999999999999999999999999999999999998 88 99999988643
Q ss_pred -------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCC-CCCccHHHHHHHHHHhhcC------CCccCCCCCccCC
Q 021380 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (313)
Q Consensus 149 -------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~l~~~------~~~~~~~LSgGek 214 (313)
.+.++|++|+... + + +|+.+|+.+.....+. ......+.+.++++.++.. .+.++.+|||||+
T Consensus 74 ~~~~~~~~~~i~~v~q~~~~-~-~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~ 150 (247)
T TIGR00972 74 KIDVVELRRRVGMVFQKPNP-F-P-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQ 150 (247)
T ss_pred ccchHHHHhheEEEecCccc-C-C-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHH
Confidence 2358999998543 3 2 7999999876544332 1122234567788888753 3567789999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~ 281 (313)
||++||++++.+++++++|+|+..||.. +++.|.++.+ .+|++|||++++.. |++ |+++..|++.++
T Consensus 151 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 151 QRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999984 4444444432 35799999998765 554 888888888776
Q ss_pred H
Q 021380 282 A 282 (313)
Q Consensus 282 ~ 282 (313)
.
T Consensus 231 ~ 231 (247)
T TIGR00972 231 F 231 (247)
T ss_pred H
Confidence 4
No 91
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-35 Score=270.04 Aligned_cols=203 Identities=16% Similarity=0.144 Sum_probs=160.9
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------ 149 (313)
++|+++||++.|++.. ...+|+|+||+|++|+++||+|+||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 3 ~~l~~~~l~~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQ-EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE---AESGQIIIDGDLLTEENVWD 78 (279)
T ss_pred ceEEEEeEEEEcCCCC-cCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECCcCcHHH
Confidence 3799999999997421 1128999999999999999999999999999999999999 99999999996532
Q ss_pred --CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhccc
Q 021380 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 150 --~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
+.++|++|++..... .+|+.+|+.+.....+.......+++.++++.++. ..++.+.+|||||+||++||++++.
T Consensus 79 ~~~~i~~v~q~~~~~~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~ 157 (279)
T PRK13650 79 IRHKIGMVFQNPDNQFV-GATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAM 157 (279)
T ss_pred HHhhceEEEcChHHhcc-cccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 358999998532222 37999999887554444333334567788888884 3466788999999999999999999
Q ss_pred CccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 226 ~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
++++|++|+|+..||. .+++.+.++.+ .+|++|||++.+.. |++ |+++..|++.++..
T Consensus 158 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13650 158 RPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFS 229 (279)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 9999999999999999 44445555443 24799999998854 544 88888898887654
No 92
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-35 Score=265.90 Aligned_cols=198 Identities=19% Similarity=0.225 Sum_probs=157.5
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
||+++||++.|++.. +|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~G~i~~~g~~~~~~~~~~~ 74 (258)
T PRK13548 2 MLEARNLSVRLGGRT----LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS---PDSGEVRLNGRPLADWSPAEL 74 (258)
T ss_pred eEEEEeEEEEeCCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcccCCHHHh
Confidence 689999999998766 9999999999999999999999999999999999999 9999999988642
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcc--
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG-- 224 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~-- 224 (313)
.+.++|++|+...++ .+|+.+|+.+.....+.........+.++++.++. ..++++.+|||||+||++||++++
T Consensus 75 ~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~ 152 (258)
T PRK13548 75 ARRRAVLPQHSSLSF--PFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQL 152 (258)
T ss_pred hhheEEEccCCcCCC--CCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcc
Confidence 235899999964333 47999998875432222112233456778888774 346788899999999999999999
Q ss_pred ----cCccEEEEcCcccccChh----hHHHHHHhh-c---CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 225 ----LQHKVVIVDGNYLFLDGG----VWKDVSSMF-D---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 225 ----~~a~~li~d~~~llLDE~----~~~~l~~l~-~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
.+++++++|+|+..||.. +.+.|.++. + .+|++|||++++.. |++ |+++..|++.++..
T Consensus 153 ~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 153 WEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred cccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 589999999999999994 455555554 2 25799999998865 544 88888888777643
No 93
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.6e-35 Score=260.51 Aligned_cols=181 Identities=12% Similarity=0.070 Sum_probs=143.2
Q ss_pred EEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---CCeEEEE
Q 021380 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDVATVL 155 (313)
Q Consensus 79 ~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~---~~~i~~v 155 (313)
+++||++.|++.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.++|+
T Consensus 1 ~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGGHP----VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK---PTSGSIRVFGKPLEKERKRIGYV 73 (213)
T ss_pred CcccceeEECCEE----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCccHHHHHhheEEe
Confidence 3689999998766 9999999999999999999999999999999999999 9999999998753 3469999
Q ss_pred eccCCCCCcccCCcccCHHHHHHhcC----CCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccE
Q 021380 156 PMDGFHLYLSQLDAMEDPKEAHARRG----APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 156 ~q~~~~~~~~~ltv~e~l~~~~~~~~----~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~ 229 (313)
+|++.......+|+.+|+.+...... .......+++.++++.++. ..++++.+||||||||++||++++.++++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 153 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDL 153 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 99864322223799999877533211 1111233456778888774 34667889999999999999999999999
Q ss_pred EEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 230 VIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 230 li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
+++|+|+..||.. +.+.|.++.+ .+|++|||++++..
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~ 197 (213)
T cd03235 154 LLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLE 197 (213)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 9999999999994 4445544432 25799999998764
No 94
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=2.2e-35 Score=258.64 Aligned_cols=176 Identities=16% Similarity=0.089 Sum_probs=144.6
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------CCe
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDV 151 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------~~~ 151 (313)
|+++|+++.|++.. +|+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.
T Consensus 1 l~~~~l~~~~~~~~----~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (208)
T cd03268 1 LKTNDLTKTYGKKR----VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK---PDSGEITFDGKSYQKNIEALRR 73 (208)
T ss_pred CEEEEEEEEECCeE----eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCCcccchHHHHhh
Confidence 46899999998766 9999999999999999999999999999999999999 9999999998753 235
Q ss_pred EEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccE
Q 021380 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~ 229 (313)
++|++|+...++ .+|+.+|+.+....++. +..++.++++.++. ..++++.+|||||+||++||++++.++++
T Consensus 74 i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 147 (208)
T cd03268 74 IGALIEAPGFYP--NLTARENLRLLARLLGI----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDL 147 (208)
T ss_pred EEEecCCCccCc--cCcHHHHHHHHHHhcCC----cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 899999964333 47999999876544332 34567778888874 34667789999999999999999999999
Q ss_pred EEEcCcccccChhh----HHHHHHhhc---CeEEEEcChHHHHH
Q 021380 230 VIVDGNYLFLDGGV----WKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 230 li~d~~~llLDE~~----~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
+++|+|+..||... ++.+.++.. .+|++|||++++..
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~ 191 (208)
T cd03268 148 LILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQK 191 (208)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 99999999999943 444444432 24799999998765
No 95
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-35 Score=259.67 Aligned_cols=179 Identities=15% Similarity=0.059 Sum_probs=144.5
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------CC
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PD 150 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------~~ 150 (313)
|+++|+++.|++.. +|+|+||+|++| +++|+||||||||||+++|+|+++ |++|+|.++|.+. .+
T Consensus 1 i~~~~~~~~~~~~~----~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 72 (211)
T cd03264 1 LQLENLTKRYGKKR----ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP---PSSGTIRIDGQDVLKQPQKLRR 72 (211)
T ss_pred CEEEEEEEEECCEE----EEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCCccccchHHHHh
Confidence 47899999998766 999999999999 999999999999999999999999 9999999998653 24
Q ss_pred eEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCcc
Q 021380 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~ 228 (313)
.++|++|++..++ .+|+.+|+.+.....+.......+.+.++++.++. ..+.++.+|||||+||++||++++.+++
T Consensus 73 ~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 150 (211)
T cd03264 73 RIGYLPQEFGVYP--NFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPS 150 (211)
T ss_pred heEEecCCCcccc--cCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 5899999965433 47999999876554433322234456778888774 3466778999999999999999999999
Q ss_pred EEEEcCcccccChhhH----HHHHHhhc--CeEEEEcChHHHHH
Q 021380 229 VVIVDGNYLFLDGGVW----KDVSSMFD--EKWFIEVDLDTAMQ 266 (313)
Q Consensus 229 ~li~d~~~llLDE~~~----~~l~~l~~--~~i~vtHd~~~~~~ 266 (313)
++++|+|+..||.... +.+.++.+ .+|++|||++++..
T Consensus 151 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~ 194 (211)
T cd03264 151 ILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVES 194 (211)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHH
Confidence 9999999999999444 44444332 24799999998764
No 96
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=4.9e-35 Score=262.28 Aligned_cols=198 Identities=16% Similarity=0.154 Sum_probs=157.1
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------ 149 (313)
++|+++|+++.|++.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 1 ~~i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~ 73 (242)
T TIGR03411 1 PILYLEGLSVSFDGFK----ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR---PDEGSVLFGGTDLTGLPEHQ 73 (242)
T ss_pred CeEEEEeeEEEcCCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCeecCCCCHHH
Confidence 3689999999998766 9999999999999999999999999999999999999 99999999986431
Q ss_pred ---CeEEEEeccCCCCCcccCCcccCHHHHHHhcC--------CCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCc
Q 021380 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG--------APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDP 216 (313)
Q Consensus 150 ---~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~--------~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqR 216 (313)
..++|++|++..++ .+|+.+|+.+...... ........++.++++.++.. .+..+..|||||+||
T Consensus 74 ~~~~~i~~~~q~~~~~~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qr 151 (242)
T TIGR03411 74 IARAGIGRKFQKPTVFE--NLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQW 151 (242)
T ss_pred HHhcCeeEeccccccCC--CCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence 24899999864333 4799999887543110 11112344567888888743 366778999999999
Q ss_pred chhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 217 VEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 217 v~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
++||++++.+++++++|+|+..||.. +++.|.++.. .+|++|||++++.. |++ |+++..|+++++.
T Consensus 152 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 152 LEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred HHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence 99999999999999999999999994 4444444433 35799999999875 444 8888888877654
No 97
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5e-35 Score=258.65 Aligned_cols=180 Identities=17% Similarity=0.216 Sum_probs=145.7
Q ss_pred EEEccceeEccc----cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---CC
Q 021380 78 VEARCMDEVYDA----LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PD 150 (313)
Q Consensus 78 l~v~~ls~~y~~----~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~---~~ 150 (313)
|+++|+++.|++ .. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+
T Consensus 1 l~~~~l~~~~~~~~~~~~----il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~ 73 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVT----ALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER---PTSGEVLVDGEPVTGPGP 73 (220)
T ss_pred CeEEEEEEEcCCCCcceE----EEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECccccC
Confidence 468999999986 45 9999999999999999999999999999999999999 9999999988643 35
Q ss_pred eEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCcc
Q 021380 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a~ 228 (313)
.++|++|++..+. .+|+.+|+.+....++.......+.+.++++.++.. .++.+..||||||||++||++++.+++
T Consensus 74 ~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 151 (220)
T cd03293 74 DRGYVFQQDALLP--WLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPD 151 (220)
T ss_pred cEEEEeccccccc--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 6999999865332 479999998765544433222345677888888743 456778999999999999999999999
Q ss_pred EEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 229 VVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 229 ~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
++++|+|+..||. .+++.|.++.. .+|++|||++++..
T Consensus 152 lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~ 197 (220)
T cd03293 152 VLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVF 197 (220)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHH
Confidence 9999999999999 44455554432 24799999997754
No 98
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-35 Score=269.05 Aligned_cols=200 Identities=17% Similarity=0.134 Sum_probs=161.6
Q ss_pred CeEEEccceeEcc-ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~-~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
++|+++||++.|+ +.. +|+++||+|.+||++||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 4 ~~l~~~~l~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~---p~~G~i~i~g~~~~~~~~~ 76 (283)
T PRK13636 4 YILKVEELNYNYSDGTH----ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK---PSSGRILFDGKPIDYSRKG 76 (283)
T ss_pred ceEEEEeEEEEeCCCCe----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCccEEEECCEECCCCcch
Confidence 4799999999996 455 9999999999999999999999999999999999999 9999999998653
Q ss_pred ----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhh
Q 021380 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~a 222 (313)
.+.++|++|++..... ..|+.+|+.+.....+.+......++.++++.++. ..++++..|||||+||++||++
T Consensus 77 ~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~lara 155 (283)
T PRK13636 77 LMKLRESVGMVFQDPDNQLF-SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGV 155 (283)
T ss_pred HHHHHhhEEEEecCcchhhc-cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence 1358999998532222 36999999876554444433334567788888884 3467788999999999999999
Q ss_pred cccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++.++++|++|+|+..||.. +++.|.++.+ .++++|||++++.. |++ |++++.|.++++..
T Consensus 156 L~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 156 LVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999994 4445555543 24699999999875 554 89999999888754
No 99
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.7e-35 Score=261.10 Aligned_cols=195 Identities=12% Similarity=0.069 Sum_probs=154.0
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---------
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--------- 148 (313)
|+++||++.|++.. +|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (230)
T TIGR03410 1 LEVSNLNVYYGQSH----ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP---VKSGSIRLDGEDITKLPPHERA 73 (230)
T ss_pred CEEEeEEEEeCCeE----EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHHHHH
Confidence 46899999998766 9999999999999999999999999999999999999 9999999988542
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---cCCCccCCCCCccCCCcchhhhhccc
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---NQGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---~~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
.+.++|++|+...++ .+|+.+|+.+....++.. ..+...++++.++ ...+.++.+|||||+||++||++++.
T Consensus 74 ~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 74 RAGIAYVPQGREIFP--RLTVEENLLTGLAALPRR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred HhCeEEeccCCcccC--CCcHHHHHHHHHHhcCcc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 235899999965332 479999998765433211 1223455555554 34577888999999999999999999
Q ss_pred CccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 226 ~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
+++++++|+|+..||. .+++.|.++.+ .+|++|||++++.. +++ |++++.|+.+++...
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~~~ 222 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELDED 222 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcChH
Confidence 9999999999999999 34444544432 24799999998875 444 888888887776433
No 100
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-35 Score=268.48 Aligned_cols=199 Identities=16% Similarity=0.210 Sum_probs=157.9
Q ss_pred eEEEccceeEcc-ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~-~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
||+++||++.|+ +.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ml~~~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 73 (274)
T PRK13644 1 MIRLENVSYSYPDGTP----ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR---PQKGKVLVSGIDTGDFSKLQ 73 (274)
T ss_pred CEEEEEEEEEcCCCCc----eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEECCccccHH
Confidence 488999999995 444 9999999999999999999999999999999999999 9999999998643
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcc
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~ 224 (313)
.+.++|++|++...+. ..|+.+|+.+....++.......+.+.++++.++. ..+.++..|||||+||++||++++
T Consensus 74 ~~~~~i~~v~q~~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~ 152 (274)
T PRK13644 74 GIRKLVGIVFQNPETQFV-GRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILT 152 (274)
T ss_pred HHHhheEEEEEChhhhcc-cchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHH
Confidence 1348999998532122 36999999876544433322334456777888874 346678899999999999999999
Q ss_pred cCccEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 225 ~~a~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
.+++++++|+|+..||. .+++.+.++.+ .+|++|||++.+.. |++ |+++..|+++++..
T Consensus 153 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 153 MEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999998 44555555443 24799999999854 444 88888888877643
No 101
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-35 Score=269.95 Aligned_cols=202 Identities=12% Similarity=0.083 Sum_probs=159.6
Q ss_pred eEEEccceeEccccc-cccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~-~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
.|+++||++.|++.. ....+|+||||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK---PTTGTVTVDDITITHKTKDK 78 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 489999999996421 11239999999999999999999999999999999999999 9999999998542
Q ss_pred -----CCeEEEEeccCC-CCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchh
Q 021380 149 -----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 149 -----~~~i~~v~q~~~-~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~l 219 (313)
.+.++|++|++. .++. .|+.+|+.+.....+.......+++.++++.++.. .++.+.+|||||+||++|
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~l 156 (286)
T PRK13646 79 YIRPVRKRIGMVFQFPESQLFE--DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAI 156 (286)
T ss_pred hHHHHHhheEEEecChHhccch--hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHH
Confidence 235899999852 2232 59999998865544433333345677888888853 346778999999999999
Q ss_pred hhhcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 220 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 220 a~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
|++++.+++++++|+|+..||. .+++.+.++.+ .+|++|||++++.. |++ |++++.|++.++..
T Consensus 157 araL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 157 VSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999 44455555432 24799999998765 555 89899998887654
No 102
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-35 Score=262.75 Aligned_cols=196 Identities=15% Similarity=0.114 Sum_probs=154.5
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
+|+++|+++.|+++. +|+|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 74 (242)
T PRK11124 2 SIQLNGINCFYGAHQ----ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPSD 74 (242)
T ss_pred EEEEEeeEEEECCee----eEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecccccccch
Confidence 689999999998766 9999999999999999999999999999999999999 9999999988642
Q ss_pred ------CCeEEEEeccCCCCCcccCCcccCHHHH-HHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchh
Q 021380 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 149 ------~~~i~~v~q~~~~~~~~~ltv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~l 219 (313)
.+.++|++|++..++ .+|+.+|+.+. ....+.........+.++++.++.. .++.+..|||||+||++|
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~--~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~l 152 (242)
T PRK11124 75 KAIRELRRNVGMVFQQYNLWP--HLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAI 152 (242)
T ss_pred hhHHHHHhheEEEecCccccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence 235899999865333 47999998753 2223322222234567778887743 466778999999999999
Q ss_pred hhhcccCccEEEEcCcccccChhhH----HHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHH
Q 021380 220 DILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 220 a~al~~~a~~li~d~~~llLDE~~~----~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~ 281 (313)
|++++.+++++++|+|+..||.... +.+.++.+ .+|++|||.+++.. |++ |+++..|++.++
T Consensus 153 aral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999444 44444332 24799999998865 444 788888876654
No 103
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-35 Score=263.06 Aligned_cols=181 Identities=13% Similarity=0.096 Sum_probs=146.9
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---CCeEE
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDVAT 153 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~---~~~i~ 153 (313)
||+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. ...++
T Consensus 1 ml~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 73 (255)
T PRK11248 1 MLQISHLYADYGGKP----ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP---YQHGSITLDGKPVEGPGAERG 73 (255)
T ss_pred CEEEEEEEEEeCCee----eEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCCcEE
Confidence 489999999998766 9999999999999999999999999999999999999 9999999988653 23589
Q ss_pred EEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCccEEE
Q 021380 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 154 ~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a~~li 231 (313)
|++|+...++ .+|+.+|+.+.....+........++.++++.++.. .++++..|||||+||++||++++.++++|+
T Consensus 74 ~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lll 151 (255)
T PRK11248 74 VVFQNEGLLP--WRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLL 151 (255)
T ss_pred EEeCCCccCC--CCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999964332 479999998765444333222345677888888743 356778999999999999999999999999
Q ss_pred EcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 232 VDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 232 ~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
+|+|+..||.. +++.|.++.. .+|++|||++++..
T Consensus 152 LDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~ 194 (255)
T PRK11248 152 LDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVF 194 (255)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 99999999994 4445554422 24799999998865
No 104
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.5e-35 Score=270.71 Aligned_cols=203 Identities=14% Similarity=0.117 Sum_probs=159.0
Q ss_pred CCeEEEccceeEccccc-cccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----
Q 021380 75 IPVVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~-~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~----- 148 (313)
.++|+++||++.|++.. ....+|+||||+|++|+++||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~---p~~G~I~i~g~~~~~~~~ 95 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK---SKYGTIQVGDIYIGDKKN 95 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCEEcccccc
Confidence 46899999999997421 11239999999999999999999999999999999999999 9999999987431
Q ss_pred -------------------CCeEEEEeccCC-CCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCcc
Q 021380 149 -------------------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVY 205 (313)
Q Consensus 149 -------------------~~~i~~v~q~~~-~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~ 205 (313)
.+.++|++|++. .++. .|+.+|+.+.....+.+......++.++++.++.. .+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~ 173 (320)
T PRK13631 96 NHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK--DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERS 173 (320)
T ss_pred cccccccccccccchHHHHHhcEEEEEECchhcccc--chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCC
Confidence 235899999862 2332 59999998765443333223344667788888753 4667
Q ss_pred CCCCCccCCCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hh
Q 021380 206 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KR 271 (313)
Q Consensus 206 ~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr 271 (313)
+.+|||||+||++||++++.++++|++|+|+..||.. +++.|.++.. .+|++|||++++.. |++ |+
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~ 253 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 7899999999999999999999999999999999994 3444444332 25799999998765 554 89
Q ss_pred hhccCChhHHH
Q 021380 272 HISTGKPPDVA 282 (313)
Q Consensus 272 ~v~~G~~~e~~ 282 (313)
+++.|++.++.
T Consensus 254 i~~~g~~~~~~ 264 (320)
T PRK13631 254 ILKTGTPYEIF 264 (320)
T ss_pred EEEeCCHHHHh
Confidence 99999888764
No 105
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.7e-35 Score=256.74 Aligned_cols=176 Identities=16% Similarity=0.047 Sum_probs=142.0
Q ss_pred EEccceeEccc-cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----CCeE
Q 021380 79 EARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PDVA 152 (313)
Q Consensus 79 ~v~~ls~~y~~-~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-----~~~i 152 (313)
+++||++.|++ .. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.+
T Consensus 1 ~~~~l~~~~~~~~~----~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~i 73 (205)
T cd03226 1 RIENISFSYKKGTE----ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK---ESSGSILLNGKPIKAKERRKSI 73 (205)
T ss_pred CcccEEEEeCCcCc----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEhhhHHhhcce
Confidence 36899999986 55 9999999999999999999999999999999999999 9999999998653 2469
Q ss_pred EEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEE
Q 021380 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 153 ~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~l 230 (313)
+|++|++..... .+|+.+|+.+.....+ ....++.++++.++. ..++++.+||||||||++||++++.+++++
T Consensus 74 ~~~~q~~~~~~~-~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 148 (205)
T cd03226 74 GYVMQDVDYQLF-TDSVREELLLGLKELD----AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLL 148 (205)
T ss_pred EEEecChhhhhh-hccHHHHHhhhhhhcC----ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEE
Confidence 999999532222 3699999987543322 123567788888884 346677899999999999999999999999
Q ss_pred EEcCcccccChh----hHHHHHHhhcC---eEEEEcChHHHHH
Q 021380 231 IVDGNYLFLDGG----VWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 231 i~d~~~llLDE~----~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
++|+|+..||.. +++.|.++.+. +|++|||++++..
T Consensus 149 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~ 191 (205)
T cd03226 149 IFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAK 191 (205)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 999999999994 44444444222 4799999998754
No 106
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=9.4e-35 Score=256.91 Aligned_cols=185 Identities=14% Similarity=0.069 Sum_probs=144.8
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
+|+++||++.|++......+|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN---PTSGEVLFNGQSLSKLSSNER 77 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcCHhHH
Confidence 47899999999752111229999999999999999999999999999999999999 9999999998542
Q ss_pred ----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhh
Q 021380 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~a 222 (313)
.+.++|++|++..++ .+|+.+|+.+.............+.+.++++.++.. .++++..|||||+||++||++
T Consensus 78 ~~~~~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 155 (221)
T TIGR02211 78 AKLRNKKLGFIYQFHHLLP--DFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARA 155 (221)
T ss_pred HHHHHhcEEEEecccccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 135899999964333 479999998754433222222344567788888743 456778999999999999999
Q ss_pred cccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
++.+++++++|+|+..||.. +++.|.++.+ .+|++|||++++..
T Consensus 156 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~ 207 (221)
T TIGR02211 156 LVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK 207 (221)
T ss_pred HhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 99999999999999999983 4455554432 25799999998743
No 107
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-35 Score=263.93 Aligned_cols=198 Identities=13% Similarity=0.070 Sum_probs=156.4
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCceeeeCCCCC-
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~i~~~~~~~- 148 (313)
+++|+++|+++.|+++. +|+|+||+|.+|+++||+|+||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 10 ~~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---~~~~~~~~G~i~~~g~~i~ 82 (258)
T PRK14268 10 QPQIKVENLNLWYGEKQ----ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMND---LIKNCRIEGKVSIEGEDIY 82 (258)
T ss_pred ceeEEEeeeEEEeCCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---cccCCCcceEEEECCEEcc
Confidence 56899999999998766 9999999999999999999999999999999999987 5 799999988542
Q ss_pred ---------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC------CCccCCCCCccC
Q 021380 149 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 213 (313)
Q Consensus 149 ---------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~------~~~~~~~LSgGe 213 (313)
.+.++|++|+... +. +|+.+|+.+.....+.........+.++++.++.. .+.++..|||||
T Consensus 83 ~~~~~~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~ 159 (258)
T PRK14268 83 EPDVDVVELRKNVGMVFQKPNP-FP--MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQ 159 (258)
T ss_pred cccchHHHHhhhEEEEecCCcc-Cc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHH
Confidence 2358999998543 32 69999998765444332222233466777777642 356777999999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhH
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e 280 (313)
+||++||++++.+++++++|+|+..||... ++.|.++.+ .+|++|||++++.. |++ |++++.|.+.+
T Consensus 160 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 239 (258)
T PRK14268 160 QQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQ 239 (258)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999943 444444432 25799999998865 544 88888888877
Q ss_pred HH
Q 021380 281 VA 282 (313)
Q Consensus 281 ~~ 282 (313)
+.
T Consensus 240 ~~ 241 (258)
T PRK14268 240 IF 241 (258)
T ss_pred Hh
Confidence 64
No 108
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=7.2e-35 Score=264.79 Aligned_cols=203 Identities=15% Similarity=0.123 Sum_probs=158.5
Q ss_pred eEEEccceeEccccc-----cccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---
Q 021380 77 VVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~-----~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--- 148 (313)
||+++||++.|++.. ....+|+|+||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~ 78 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK---PAQGTVSFRGQDLYQL 78 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccc
Confidence 689999999996310 01239999999999999999999999999999999999999 9999999998542
Q ss_pred --------CCeEEEEeccCCCCCcccCCcccCHHHHHHhc-CCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCc
Q 021380 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDP 216 (313)
Q Consensus 149 --------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqR 216 (313)
.+.++|++|++.....+.+|+.+|+.+..... +........++.++++.++.. .+.++..|||||+||
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qr 158 (265)
T TIGR02769 79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQR 158 (265)
T ss_pred CHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHH
Confidence 23599999996322223579999987654332 222223345677888888753 366788999999999
Q ss_pred chhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHH
Q 021380 217 VEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 217 v~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~ 281 (313)
++||++++.++++|++|+|+..||.. +++.|.++.+ .+|++|||++.+.. +++ |+++..|+++++
T Consensus 159 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 238 (265)
T TIGR02769 159 INIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQL 238 (265)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHH
Confidence 99999999999999999999999994 5555555542 24799999998865 444 888888888776
Q ss_pred H
Q 021380 282 A 282 (313)
Q Consensus 282 ~ 282 (313)
.
T Consensus 239 ~ 239 (265)
T TIGR02769 239 L 239 (265)
T ss_pred c
Confidence 4
No 109
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-34 Score=262.20 Aligned_cols=199 Identities=13% Similarity=0.101 Sum_probs=156.5
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCceeeeCCCCC-
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~i~~~~~~~- 148 (313)
.++|+++|+++.|++.. +|+|+||+|++|++++|+|+||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 5 ~~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~i~~~g~~i~ 77 (254)
T PRK14273 5 EAIIETENLNLFYTDFK----ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMND---LVEGIKIEGNVIYEGKNIY 77 (254)
T ss_pred CceEEEeeeEEEeCCce----eecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCcCCCCceEEEECCEecc
Confidence 45799999999998766 9999999999999999999999999999999999998 6 489999988542
Q ss_pred ---------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC-CccHHHHHHHHHHhhc------CCCccCCCCCcc
Q 021380 149 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHG 212 (313)
Q Consensus 149 ---------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~LSgG 212 (313)
.+.++|++|+... +. +|+.+|+.+.....+... ....+.+.++++.++. ..+.++.+||||
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG 154 (254)
T PRK14273 78 SNNFDILELRRKIGMVFQTPNP-FL--MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGG 154 (254)
T ss_pred cccccHHHHhhceEEEeecccc-cc--CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHH
Confidence 2358999999643 32 799999987654333211 1123455666776653 246678899999
Q ss_pred CCCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChh
Q 021380 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 213 ekqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~ 279 (313)
||||++||++++.+++++++|+|+..||.. +++.|.++.. .+|++|||++++.. |++ |+++..|++.
T Consensus 155 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 234 (254)
T PRK14273 155 QQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTD 234 (254)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999994 4444444432 25799999998765 544 8888888887
Q ss_pred HHHH
Q 021380 280 DVAK 283 (313)
Q Consensus 280 e~~~ 283 (313)
++..
T Consensus 235 ~~~~ 238 (254)
T PRK14273 235 ELFF 238 (254)
T ss_pred HHHh
Confidence 7643
No 110
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-35 Score=267.04 Aligned_cols=196 Identities=17% Similarity=0.192 Sum_probs=156.8
Q ss_pred EEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC----------
Q 021380 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---------- 148 (313)
Q Consensus 79 ~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~---------- 148 (313)
.++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 26 ~~~~~~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~---p~~G~i~i~g~~~~~~~~~~~~~ 98 (269)
T cd03294 26 SKEEILKKTGQTV----GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE---PTSGKVLIDGQDIAAMSRKELRE 98 (269)
T ss_pred hhhhhhhhcCCce----EeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccChhhhhh
Confidence 5679999999887 9999999999999999999999999999999999999 9999999988542
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcc
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~ 224 (313)
.+.++|++|+...++ .+|+.+|+.+.....+.......+++.++++.++.. .++.+.+|||||+||++||++++
T Consensus 99 ~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~ 176 (269)
T cd03294 99 LRRKKISMVFQSFALLP--HRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALA 176 (269)
T ss_pred hhcCcEEEEecCcccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 235899999964333 479999998765443332222334567788888743 46778899999999999999999
Q ss_pred cCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 225 LQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 225 ~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
.++++|++|+|+..||.. +.+.|.++.+ .+|++|||++++.. +++ |+++..|++.++..
T Consensus 177 ~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 177 VDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999994 4444444432 24799999998765 444 78888888777643
No 111
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=1.2e-34 Score=262.19 Aligned_cols=200 Identities=17% Similarity=0.164 Sum_probs=157.2
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC-----C--
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----P-- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~-----~-- 148 (313)
++|+++||++.|+++. +|+++||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+ .
T Consensus 5 ~~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~i~~ 77 (258)
T PRK11701 5 PLLSVRGLTKLYGPRK----GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA---PDAGEVHYRMRDGQLRDLYA 77 (258)
T ss_pred ceEEEeeeEEEcCCce----eeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCcccccccccc
Confidence 4799999999998766 9999999999999999999999999999999999999 999999999875 2
Q ss_pred ----------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCC-CCccHHHHHHHHHHhhcC---CCccCCCCCccCC
Q 021380 149 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVG 214 (313)
Q Consensus 149 ----------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGek 214 (313)
...++|++|+........+++.+|+.+.....+.. .......+.++++.++.. .++.+.+|||||+
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~ 157 (258)
T PRK11701 78 LSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQ 157 (258)
T ss_pred CCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHH
Confidence 12489999996422333468888886643322211 112234567788888753 3567889999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChh
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~ 279 (313)
||++||++++.+++++++|+|+..||... ++.|.++.+ .+|++|||++.+.. +++ |++++.|+++
T Consensus 158 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 237 (258)
T PRK11701 158 QRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTD 237 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999944 444444333 24799999999875 444 8888888887
Q ss_pred HHH
Q 021380 280 DVA 282 (313)
Q Consensus 280 e~~ 282 (313)
++.
T Consensus 238 ~~~ 240 (258)
T PRK11701 238 QVL 240 (258)
T ss_pred HHh
Confidence 764
No 112
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-35 Score=267.32 Aligned_cols=200 Identities=19% Similarity=0.180 Sum_probs=159.9
Q ss_pred CeEEEccceeEccc--cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----
Q 021380 76 PVVEARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~--~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~----- 148 (313)
++|+++||++.|++ +. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 4 ~~l~~~~l~~~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~---p~~G~i~~~g~~i~~~~~ 76 (279)
T PRK13635 4 EIIRVEHISFRYPDAATY----ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL---PEAGTITVGGMVLSEETV 76 (279)
T ss_pred ceEEEEEEEEEeCCCCcc----ceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCcH
Confidence 47999999999974 34 9999999999999999999999999999999999999 9999999999653
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhc
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al 223 (313)
.+.++|++|+....+. ..|+.+|+.+.....+.+.....+++.++++.++. ..+.++..|||||+||++||+++
T Consensus 77 ~~~~~~i~~~~q~~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral 155 (279)
T PRK13635 77 WDVRRQVGMVFQNPDNQFV-GATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVL 155 (279)
T ss_pred HHHhhheEEEEeCHHHhcc-cccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 2358999999521222 36999999876554443333334557778888774 34667789999999999999999
Q ss_pred ccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
+.++++|++|+|+..||. .+++.|.++.+ .++++|||++++.. |++ |++++.|++.++..
T Consensus 156 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 156 ALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999 44555555543 24799999998865 444 88888898877653
No 113
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=8.1e-35 Score=263.29 Aligned_cols=199 Identities=14% Similarity=0.117 Sum_probs=158.1
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
.+|+++||++.|+++. +|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 4 ~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~ 76 (257)
T PRK10619 4 NKLNVIDLHKRYGEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGSIVVNGQTINLVRDKD 76 (257)
T ss_pred ccEEEeeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccccccc
Confidence 3589999999998776 9999999999999999999999999999999999999 9999999998532
Q ss_pred --------------CCeEEEEeccCCCCCcccCCcccCHHHHHH-hcCCCCCccHHHHHHHHHHhhcC---CCccCCCCC
Q 021380 149 --------------PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFD 210 (313)
Q Consensus 149 --------------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LS 210 (313)
.+.++|++|++..++ .+|+.+|+.+... ..+........++.++++.++.. .++++.+||
T Consensus 77 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~--~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS 154 (257)
T PRK10619 77 GQLKVADKNQLRLLRTRLTMVFQHFNLWS--HMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLS 154 (257)
T ss_pred cccccccchHHHHHhhceEEEecCcccCC--CCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCC
Confidence 235899999964333 4799999976432 22222222345677888888853 256778999
Q ss_pred ccCCCcchhhhhcccCccEEEEcCcccccChhhHH----HHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccC
Q 021380 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK----DVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTG 276 (313)
Q Consensus 211 gGekqRv~la~al~~~a~~li~d~~~llLDE~~~~----~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G 276 (313)
|||+||++||++++.+++++++|+|+..||....+ .|.++.+ .+|++|||++++.. |++ |++++.|
T Consensus 155 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~ 234 (257)
T PRK10619 155 GGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 234 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999994443 4444432 24799999998875 554 8888888
Q ss_pred ChhHHHH
Q 021380 277 KPPDVAK 283 (313)
Q Consensus 277 ~~~e~~~ 283 (313)
+++++..
T Consensus 235 ~~~~~~~ 241 (257)
T PRK10619 235 APEQLFG 241 (257)
T ss_pred CHHHhhh
Confidence 8777643
No 114
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=8.8e-35 Score=257.42 Aligned_cols=181 Identities=14% Similarity=0.082 Sum_probs=145.5
Q ss_pred eEEEccceeEc-cccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y-~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
||+++|+++.| +++. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~ 73 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQ----ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER---PSAGKIWFSGHDITRLKNRE 73 (222)
T ss_pred CEEEEeeEEEecCCCe----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCChhH
Confidence 48899999999 5555 9999999999999999999999999999999999999 9999999988542
Q ss_pred ----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhh
Q 021380 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~a 222 (313)
.+.++|++|++..++ .+|+.+|+.+.....+.........+.++++.++. ..++.+.+|||||+||++||++
T Consensus 74 ~~~~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 151 (222)
T PRK10908 74 VPFLRRQIGMIFQDHHLLM--DRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARA 151 (222)
T ss_pred HHHHHhheEEEecCccccc--cccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHH
Confidence 235899999964333 47999999876544433222223456678888774 3466778999999999999999
Q ss_pred cccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
++.+++++++|+|+..||.. +++.+.++.+ .+|++|||++++..
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 202 (222)
T PRK10908 152 VVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISR 202 (222)
T ss_pred HHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99999999999999999994 4444554432 24799999998875
No 115
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-34 Score=260.76 Aligned_cols=201 Identities=13% Similarity=0.103 Sum_probs=155.8
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCceeeeCCCCC----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP---- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~--~p~~G~i~~~~~~~---- 148 (313)
-++|+++||+++|++.. +|+++||+|++|+++||+||||||||||+++|+|+++.. .|++|+|.++|.+.
T Consensus 4 ~~~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 79 (253)
T PRK14242 4 PPKMEARGLSFFYGDFQ----ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH 79 (253)
T ss_pred CcEEEEeeeEEEECCee----eecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc
Confidence 36899999999998766 999999999999999999999999999999999986300 04799999998542
Q ss_pred ------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC-CccHHHHHHHHHHhhcC------CCccCCCCCccCCC
Q 021380 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~LSgGekq 215 (313)
.+.++|++|+... +. .|+.+|+.+.....+... ....+++.++++.++.. .+..+..|||||+|
T Consensus 80 ~~~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 156 (253)
T PRK14242 80 VDVVELRRRVGMVFQKPNP-FP--KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQ 156 (253)
T ss_pred cCHHHHhhcEEEEecCCCC-Cc--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHH
Confidence 2359999999643 32 499999987654433211 12244566777777642 35667899999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
|++||++++.+++++++|+|+..||.. +.+.|.++.. .+|++|||++++.. |++ |+++..|.+.++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999994 4444444432 25799999998865 544 8888888877664
No 116
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=9.2e-35 Score=257.97 Aligned_cols=187 Identities=17% Similarity=0.168 Sum_probs=143.1
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
+|+++||++.|++......+|+++||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK---PTSGSIIFDGKDLLKLSRRLR 77 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccchhhH
Confidence 47899999999764100129999999999999999999999999999999999999 9999999988542
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCc-cHHH-HHHHHHHhhcC---CCccCCCCCccCCCcchhh
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF-NPLL-LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~-~~~~-~~~~l~~l~~~---~~~~~~~LSgGekqRv~la 220 (313)
.+.++|++|++.....+.+|+.+|+.+.....+..... .... +.++++.++.. .+.++..|||||+||++||
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 157 (228)
T cd03257 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIA 157 (228)
T ss_pred HHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHH
Confidence 23589999996322233589999998765433221111 1122 24677777742 3667789999999999999
Q ss_pred hhcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 221 ILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 221 ~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
++++.+++++++|+|+..||.. +.+.|.++.. .+|++|||++.+..
T Consensus 158 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~ 211 (228)
T cd03257 158 RALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAK 211 (228)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 9999999999999999999994 4444444432 24799999998764
No 117
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-35 Score=260.84 Aligned_cols=197 Identities=12% Similarity=0.101 Sum_probs=154.8
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
|++|+++||++.|+++. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~ 75 (237)
T PRK11614 3 KVMLSFDKVSAHYGKIQ----ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR---ATSGRIVFDGKDITDWQTA 75 (237)
T ss_pred ccEEEEEeEEEeeCCce----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEecCCCCHH
Confidence 56899999999998766 9999999999999999999999999999999999999 9999999998642
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---cCCCccCCCCCccCCCcchhhhh
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---NQGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---~~~~~~~~~LSgGekqRv~la~a 222 (313)
.+.++|++|+...++ .+|+.+|+.+...... .......+.++++.++ ...+.++.+|||||+||++||++
T Consensus 76 ~~~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~a 151 (237)
T PRK11614 76 KIMREAVAIVPEGRRVFS--RMTVEENLAMGGFFAE--RDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRA 151 (237)
T ss_pred HHHHhCEEEeccCcccCC--CCcHHHHHHHhhhccC--hhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHH
Confidence 235899999965333 4799999877532211 1112234455556552 23456777999999999999999
Q ss_pred cccCccEEEEcCcccccChhh----HHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE~~----~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
++.+++++++|+|+..||... ++.|.++.+ .+|++|||++++.. |++ |+++..|+++++.
T Consensus 152 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred HHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 999999999999999999943 444444433 24799999998776 544 8888889887774
No 118
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=2.1e-34 Score=255.99 Aligned_cols=185 Identities=16% Similarity=0.054 Sum_probs=145.9
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
++|+++||++.|++......+|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~~ 81 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD---GSSGEVSLVGQPLHQMDEEA 81 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeeEEECCEEcccCCHHH
Confidence 579999999999752111128999999999999999999999999999999999999 9999999988542
Q ss_pred -----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhh
Q 021380 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 149 -----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~ 221 (313)
.+.++|++|+...+. .+|+.+|+.+.....+.......+++.++++.++.. .++.+..|||||+||++||+
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~ 159 (228)
T PRK10584 82 RAKLRAKHVGFVFQSFMLIP--TLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALAR 159 (228)
T ss_pred HHHHHhheEEEEEcccccCC--CcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHH
Confidence 135899999964333 479999988764433322223345677888888743 35677899999999999999
Q ss_pred hcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHH
Q 021380 222 LVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAM 265 (313)
Q Consensus 222 al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~ 265 (313)
+++.+++++++|+|+..||.. +++.|.++.. .+|++|||++.+.
T Consensus 160 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 211 (228)
T PRK10584 160 AFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA 211 (228)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 999999999999999999984 4444444422 2479999999764
No 119
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.2e-34 Score=254.59 Aligned_cols=180 Identities=13% Similarity=0.117 Sum_probs=142.8
Q ss_pred EEccceeEccc--cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 79 EARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 79 ~v~~ls~~y~~--~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
+++|+++.|++ +. +|+++||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~~~~l~~~~~~~~~~----il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 73 (211)
T cd03225 1 ELKNLSFSYPDGARP----ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG---PTSGEVLVDGKDLTKLSLKEL 73 (211)
T ss_pred CceeEEEecCCCCee----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEcccCCHHHH
Confidence 36899999986 55 9999999999999999999999999999999999999 9999999988542
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~ 226 (313)
.+.++|++|+...... .+|+.+|+.+.....+.........+.++++.++.. .++++..|||||+||++||++++.+
T Consensus 74 ~~~i~~~~q~~~~~~~-~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~ 152 (211)
T cd03225 74 RRKVGLVFQNPDDQFF-GPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMD 152 (211)
T ss_pred HhhceEEecChhhhcC-CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 2358999998532122 379999987764433322222234567788888743 4667889999999999999999999
Q ss_pred ccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 227 HKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 227 a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
++++++|+|+..||.. +++.|.++.+ .+|++|||++++..
T Consensus 153 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~ 199 (211)
T cd03225 153 PDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLE 199 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 9999999999999994 4445544443 25799999998764
No 120
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-35 Score=260.34 Aligned_cols=194 Identities=14% Similarity=0.099 Sum_probs=155.6
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
|.+|+++|+++.|++.. +|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~ 73 (241)
T PRK14250 1 MNEIEFKEVSYSSFGKE----ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID---PTEGSILIDGVDIKTIDVI 73 (241)
T ss_pred CceEEEEeEEEEeCCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcChH
Confidence 45799999999998766 9999999999999999999999999999999999999 9999999998542
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhc
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al 223 (313)
.+.++|++|++.. +. .|+.+|+.+.....+ ....++.++++.++.. .++++.+|||||+||++||+++
T Consensus 74 ~~~~~i~~~~q~~~~-~~--~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al 146 (241)
T PRK14250 74 DLRRKIGMVFQQPHL-FE--GTVKDNIEYGPMLKG----EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTL 146 (241)
T ss_pred HhhhcEEEEecCchh-ch--hhHHHHHhcchhhcC----cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHH
Confidence 2458999999643 32 589998876433221 1234567788888753 3567789999999999999999
Q ss_pred ccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 224 GLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
+.+++++++|+|+..||.. +.+.|.++.+ .+|++|||++++.. |++ |+++..|.+.++.
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 147 ANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 9999999999999999994 3344444432 24799999998765 444 8888888877764
No 121
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-34 Score=260.66 Aligned_cols=198 Identities=10% Similarity=0.102 Sum_probs=155.1
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCceeeeCCCCC---
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP--- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~i~~~~~~~--- 148 (313)
+|+++|+++.|++.. +|+++||+|++|+++||+||||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 4 ~l~i~~v~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~---~~~~~~~~G~I~~~g~~~~~~ 76 (258)
T PRK14241 4 RIDVKDLNIYYGSFH----AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHE---VIPGARVEGEVLLDGEDLYGP 76 (258)
T ss_pred cEEEeeEEEEECCEe----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---cccCCCcceEEEECCEecccc
Confidence 699999999998766 9999999999999999999999999999999999986 5 699999988542
Q ss_pred -------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCC-CCCccHHHHHHHHHHhhc------CCCccCCCCCccCC
Q 021380 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGVG 214 (313)
Q Consensus 149 -------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~l~~------~~~~~~~~LSgGek 214 (313)
.+.++|++|+...++ .+|+.+|+.+.....+. ......+.+.++++.++. ..+..+.+|||||+
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 154 (258)
T PRK14241 77 GVDPVAVRRTIGMVFQRPNPFP--TMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQ 154 (258)
T ss_pred ccChHHHhcceEEEccccccCC--CCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHH
Confidence 135899999864333 47999999876544332 112223455677777764 23567789999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----------hhhhcc
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----------KRHIST 275 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----------gr~v~~ 275 (313)
||++||++++.+++++++|+|+..||.. +++.|.++.+ .+|++|||++++.. |++ |++++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 9999999999999999999999999994 4444444432 25799999998865 442 677788
Q ss_pred CChhHHHH
Q 021380 276 GKPPDVAK 283 (313)
Q Consensus 276 G~~~e~~~ 283 (313)
|++.++..
T Consensus 235 ~~~~~~~~ 242 (258)
T PRK14241 235 DDTEKIFS 242 (258)
T ss_pred CCHHHHHh
Confidence 88777643
No 122
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1e-34 Score=264.12 Aligned_cols=205 Identities=16% Similarity=0.149 Sum_probs=156.8
Q ss_pred CeEEEccceeEccccc-----cccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--
Q 021380 76 PVVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~-----~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-- 148 (313)
+||+++||++.|++.. ....+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~ 79 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGELLIDDHPLHF 79 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCC
Confidence 4799999999996321 01239999999999999999999999999999999999999 9999999998542
Q ss_pred ------CCeEEEEeccCCCCCcccCCcccCHHHHHHhc-CCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcch
Q 021380 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 149 ------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~ 218 (313)
.+.++|++|++.....+.+|+.+++.+..... ........+.+.++++.++.. .+..+.+|||||+||++
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~ 159 (267)
T PRK15112 80 GDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLG 159 (267)
T ss_pred CchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHH
Confidence 13589999986322233468888887654432 222222234567888888752 35567799999999999
Q ss_pred hhhhcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 219 DDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 219 la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
||++++.++++|++|+|+..||.. +.+.|.++.+ .+|++|||++++.. |++ |+++..|++.++..
T Consensus 160 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 239 (267)
T PRK15112 160 LARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLA 239 (267)
T ss_pred HHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhc
Confidence 999999999999999999999994 4444555432 25799999999875 444 78888888776643
No 123
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-34 Score=259.20 Aligned_cols=199 Identities=12% Similarity=0.053 Sum_probs=157.1
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCceeeeCCCCC-
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~i~~~~~~~- 148 (313)
.++|+++|+++.|+++. +|+|+||+|++|++++|+|+||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 2 ~~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~~~~~~G~i~~~g~~i~ 74 (251)
T PRK14270 2 KIKMESKNLNLWYGEKQ----ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMND---LISNVKIEGEVLLDGKNIY 74 (251)
T ss_pred ccEEEEEEeEEEECCee----eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---cccCCCCccEEEECCEecc
Confidence 35899999999998766 9999999999999999999999999999999999986 5 799999988653
Q ss_pred ---------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC-CccHHHHHHHHHHhhc------CCCccCCCCCcc
Q 021380 149 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHG 212 (313)
Q Consensus 149 ---------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~LSgG 212 (313)
.+.++|++|++.. +. +|+.+|+.+.....+... .....++.++++.++. ..+.++..||+|
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 151 (251)
T PRK14270 75 DKDVDVVELRKRVGMVFQKPNP-FP--MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGG 151 (251)
T ss_pred cccccHHHHHhheEEEecCCCc-CC--CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHH
Confidence 2358999999643 32 799999987654443211 1223445667777763 235677899999
Q ss_pred CCCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChh
Q 021380 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 213 ekqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~ 279 (313)
|+||++||++++.+++++++|+|+..||.. +++.|.++.+ .+|++|||++++.. |++ |++++.|++.
T Consensus 152 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 231 (251)
T PRK14270 152 QQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTE 231 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHH
Confidence 999999999999999999999999999994 3444444432 25799999998765 544 8888889888
Q ss_pred HHHH
Q 021380 280 DVAK 283 (313)
Q Consensus 280 e~~~ 283 (313)
++..
T Consensus 232 ~~~~ 235 (251)
T PRK14270 232 KIFL 235 (251)
T ss_pred HHhc
Confidence 7643
No 124
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.7e-35 Score=265.98 Aligned_cols=204 Identities=15% Similarity=0.180 Sum_probs=160.3
Q ss_pred CeEEEccceeEccccc--cccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----
Q 021380 76 PVVEARCMDEVYDALA--QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~--~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~----- 148 (313)
+||+++|+++.|++.. ....+|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~~~ 79 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI---PSEGKVYVDGLDTSDEEN 79 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccccc
Confidence 5799999999997421 01239999999999999999999999999999999999999 9999999998542
Q ss_pred ----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhh
Q 021380 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~a 222 (313)
.+.++|++|++..... ..++.+|+.+.....+.+.....+.+.++++.++. ..++++.+|||||+||++||++
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~lara 158 (280)
T PRK13633 80 LWDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGI 158 (280)
T ss_pred HHHHhhheEEEecChhhhhc-cccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHH
Confidence 2358999998532222 25888998876554443333334567788888874 3467788999999999999999
Q ss_pred cccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
++.+++++++|+|+..||. .+++.|.++.+ .+|++|||++++.. |++ |+++..|++.++..
T Consensus 159 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 159 LAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFK 233 (280)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999 44555555432 24799999999865 544 88888898888754
No 125
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-34 Score=261.67 Aligned_cols=199 Identities=12% Similarity=0.061 Sum_probs=156.4
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCceeeeCCCCC
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP 148 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~i~~~~~~~ 148 (313)
.+++|+++||++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 16 ~~~~l~~~nl~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~I~~~g~~i 88 (267)
T PRK14235 16 TEIKMRARDVSVFYGEKQ----ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMND---TIDGCRVTGKITLDGEDI 88 (267)
T ss_pred CCceEEEEeEEEEECCEE----EEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc---cccCCCCceEEEECCEEC
Confidence 345899999999998766 9999999999999999999999999999999999996 5 899999998542
Q ss_pred ----------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCC--CCccHHHHHHHHHHhhcC------CCccCCCCC
Q 021380 149 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP--WTFNPLLLLNCLKNLRNQ------GSVYAPSFD 210 (313)
Q Consensus 149 ----------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~--~~~~~~~~~~~l~~l~~~------~~~~~~~LS 210 (313)
.+.++|++|++.. +. .|+.+|+.+....++.. .....+++.++++.++.. .+.++.+||
T Consensus 89 ~~~~~~~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 165 (267)
T PRK14235 89 YDPRLDVVELRARVGMVFQKPNP-FP--KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLS 165 (267)
T ss_pred cccccchHHHhhceEEEecCCCC-CC--CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCC
Confidence 2358999998643 32 48999998765433321 112234567778877752 345678999
Q ss_pred ccCCCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCC
Q 021380 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 211 gGekqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~ 277 (313)
|||+||++||++++.++++|++|+|+..||.. +.+.|.++.. .+|++|||++.+.. |++ |+++..|.
T Consensus 166 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~ 245 (267)
T PRK14235 166 GGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGD 245 (267)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999994 3444444432 25799999998865 444 88888888
Q ss_pred hhHHH
Q 021380 278 PPDVA 282 (313)
Q Consensus 278 ~~e~~ 282 (313)
+.++.
T Consensus 246 ~~~~~ 250 (267)
T PRK14235 246 TEKMF 250 (267)
T ss_pred HHHHH
Confidence 77664
No 126
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=9.9e-35 Score=262.61 Aligned_cols=187 Identities=14% Similarity=0.102 Sum_probs=150.5
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---CCeE
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDVA 152 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~---~~~i 152 (313)
++|+++||++.|+++. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.+
T Consensus 11 ~~l~i~~l~~~~~~~~----il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~i 83 (257)
T PRK11247 11 TPLLLNAVSKRYGERT----VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET---PSAGELLAGTAPLAEAREDT 83 (257)
T ss_pred CcEEEEEEEEEECCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEHHHhhCce
Confidence 5699999999998766 9999999999999999999999999999999999999 9999999988542 3468
Q ss_pred EEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCccEE
Q 021380 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 153 ~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a~~l 230 (313)
+|++|++..++ .+|+.+|+.+... . ....++.++++.++.. .++++.+||||||||++||++++.+++++
T Consensus 84 ~~v~q~~~l~~--~~tv~enl~~~~~-----~-~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~ll 155 (257)
T PRK11247 84 RLMFQDARLLP--WKKVIDNVGLGLK-----G-QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLL 155 (257)
T ss_pred EEEecCccCCC--CCcHHHHHHhccc-----c-hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999965333 4799999876421 1 1234567788888743 46677899999999999999999999999
Q ss_pred EEcCcccccChhh----HHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCC
Q 021380 231 IVDGNYLFLDGGV----WKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 231 i~d~~~llLDE~~----~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~ 277 (313)
++|+|+..||... .+.|.++.. .+|++|||++++.. +++ |+++..|.
T Consensus 156 lLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~ 217 (257)
T PRK11247 156 LLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLT 217 (257)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecc
Confidence 9999999999944 344444422 24799999998765 444 67766554
No 127
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-34 Score=265.06 Aligned_cols=198 Identities=17% Similarity=0.159 Sum_probs=157.6
Q ss_pred eEEEccceeEccc-cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~-~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
||+++||++.|++ .. +|+|+||+|.+||++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (275)
T PRK13639 1 ILETRDLKYSYPDGTE----ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK---PTSGEVLIKGEPIKYDKKSL 73 (275)
T ss_pred CEEEEEEEEEeCCCCe----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEECccccchH
Confidence 4889999999963 44 8999999999999999999999999999999999999 9999999998543
Q ss_pred ---CCeEEEEeccCC-CCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhh
Q 021380 149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ---~~~i~~v~q~~~-~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~a 222 (313)
.+.++|++|++. .++ ..|+.+|+.+.....+.......+.+.++++.++. ..++++.+|||||+||++||++
T Consensus 74 ~~~~~~i~~v~q~~~~~~~--~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~lara 151 (275)
T PRK13639 74 LEVRKTVGIVFQNPDDQLF--APTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGI 151 (275)
T ss_pred HHHHhheEEEeeChhhhhc--cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 235899999952 223 26999999876443332222233456778888874 3567788999999999999999
Q ss_pred cccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++.+++++++|+|+..||.. +++.+.++.+ .++++|||++.+.. |++ |++++.|+++++..
T Consensus 152 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 152 LAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999994 4445554432 24799999998875 544 88888898887653
No 128
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-34 Score=261.47 Aligned_cols=197 Identities=17% Similarity=0.187 Sum_probs=155.8
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
||+++|++++|+++. +|+++||++++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 74 (255)
T PRK11231 2 TLRTENLTVGYGTKR----ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT---PQSGTVFLGDKPISMLSSRQL 74 (255)
T ss_pred EEEEEeEEEEECCEE----EEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCcEEEECCEEhHHCCHHHH
Confidence 699999999998766 9999999999999999999999999999999999999 9999999998642
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHH----hcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhh
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHA----RRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~----~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~a 222 (313)
.+.++|++|+...+ +.+|+.+|+.+... .++.........+.++++.++. ..+.++.+|||||+||++||++
T Consensus 75 ~~~i~~~~q~~~~~--~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 152 (255)
T PRK11231 75 ARRLALLPQHHLTP--EGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMV 152 (255)
T ss_pred hhheEEecccCCCC--CCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHH
Confidence 23589999996433 24799999876421 1121112234456777887774 3467788999999999999999
Q ss_pred cccCccEEEEcCcccccChhhH----HHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE~~~----~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
++.+++++++|+|+..||.... +.|.++.. .+|++|||++.+.. +++ |+++..|+++++.
T Consensus 153 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 153 LAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 9999999999999999999444 44444332 24799999998876 444 7888888777664
No 129
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-34 Score=271.79 Aligned_cols=190 Identities=15% Similarity=0.107 Sum_probs=154.2
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
||++ ||+|.|++.. + |+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~-~l~k~~~~~~-----~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~~~~~~~~~~ 70 (352)
T PRK11144 1 MLEL-NFKQQLGDLC-----L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR---PQKGRIVLNGRVLFDAEKGIC 70 (352)
T ss_pred CeEE-EEEEEeCCEE-----E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccccccc
Confidence 4788 9999998743 3 8999999999999999999999999999999999 9999999988531
Q ss_pred ----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhh
Q 021380 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~a 222 (313)
.+.++|++|+...++ .+|+.+|+.+... ....+++.++++.++.. .++++.+||||||||++||++
T Consensus 71 ~~~~~~~i~~v~q~~~l~~--~~tv~enl~~~~~------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalara 142 (352)
T PRK11144 71 LPPEKRRIGYVFQDARLFP--HYKVRGNLRYGMA------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRA 142 (352)
T ss_pred cchhhCCEEEEcCCcccCC--CCcHHHHHHhhhh------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHH
Confidence 245999999964333 5899999987532 12345677888888843 467788999999999999999
Q ss_pred cccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
++.+++++++|+|+..||.. +++.|.++.+ .+|+||||++++.. |++ |+++..|++.++...
T Consensus 143 L~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~ 219 (352)
T PRK11144 143 LLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWAS 219 (352)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhC
Confidence 99999999999999999994 4444544433 25799999998876 544 888889998887643
No 130
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-34 Score=264.61 Aligned_cols=202 Identities=13% Similarity=0.064 Sum_probs=156.1
Q ss_pred eEEEccceeEcccccc-ccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~-~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
.|+++||++.|++... ...+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV---PTQGSVRVDDTLITSTSKNK 78 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccccccc
Confidence 4889999999975210 1128999999999999999999999999999999999999 9999999988542
Q ss_pred -----CCeEEEEeccCC-CCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchh
Q 021380 149 -----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 149 -----~~~i~~v~q~~~-~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~l 219 (313)
.+.++|++|++. .++. .|+.+|+.+....++.........+.++++.++.. .++++.+||||||||++|
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~l 156 (280)
T PRK13649 79 DIKQIRKKVGLVFQFPESQLFE--ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAI 156 (280)
T ss_pred CHHHHHhheEEEeeChhhhhcc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHH
Confidence 135899999852 2232 59999998765443332222234566778887753 366788999999999999
Q ss_pred hhhcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 220 DILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 220 a~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
|++++.++++|++|+|+..||.. +.+.|.++.+ .+|++|||++++.. +++ |+++..|++.++..
T Consensus 157 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 157 AGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999994 3444444432 24799999998865 444 88888888877654
No 131
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-34 Score=260.25 Aligned_cols=202 Identities=11% Similarity=0.057 Sum_probs=156.0
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc--ccCCCCceeeeCCCCC----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASSFDSQVKP---- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~--~~~p~~G~i~~~~~~~---- 148 (313)
+++|+++|+++.|+++. +|+++||+|++|++++|+|+||||||||+++|+|+++ ..++++|+|.++|.+.
T Consensus 10 ~~~l~i~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~ 85 (259)
T PRK14274 10 QEVYQINGMNLWYGQHH----ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85 (259)
T ss_pred CceEEEeeEEEEECCee----eEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccc
Confidence 46899999999998766 9999999999999999999999999999999999986 1111699999988642
Q ss_pred ------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC-CccHHHHHHHHHHhhcC------CCccCCCCCccCCC
Q 021380 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~LSgGekq 215 (313)
.+.++|++|+...+ . .|+.+|+.+....++... .....++.++++.++.. .+..+.+|||||+|
T Consensus 86 ~~~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 86 VDLVELRKNIGMVFQKGNPF-P--QSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQ 162 (259)
T ss_pred cCHHHHhhceEEEecCCccc-c--cCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHH
Confidence 23589999996433 2 489999987654433211 11233456677776632 35677799999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhhH----HHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~~----~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
|++||++++.+++++++|+|+..||.... +.|.++.. .+|++|||++.+.. |++ |+++..|+++++.
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999443 44444332 24799999998765 444 8888899888764
Q ss_pred H
Q 021380 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 243 ~ 243 (259)
T PRK14274 243 S 243 (259)
T ss_pred h
Confidence 3
No 132
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-34 Score=290.26 Aligned_cols=206 Identities=16% Similarity=0.150 Sum_probs=162.8
Q ss_pred CCeEEEccceeEccccc-------cccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC
Q 021380 75 IPVVEARCMDEVYDALA-------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~-------~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~ 147 (313)
.++|+++||++.|+... ....+|+||||+|.+|+++||+|+||||||||+|+|+|+++ |++|+|.++|.+
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~ 387 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE---SQGGEIIFNGQR 387 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCcEEEECCEE
Confidence 46899999999996210 01238999999999999999999999999999999999999 999999998853
Q ss_pred C-----------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCC-CCccHHHHHHHHHHhhcC---CCccCCCCCcc
Q 021380 148 P-----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ---GSVYAPSFDHG 212 (313)
Q Consensus 148 ~-----------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG 212 (313)
. .+.++|++|+++....+.+|+.+++.+.....+.. .....+++.++|+.++.. .++++.+||||
T Consensus 388 i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgG 467 (623)
T PRK10261 388 IDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGG 467 (623)
T ss_pred CCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHH
Confidence 2 23599999996422334589999998765443321 122335677889998853 46788899999
Q ss_pred CCCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccCC
Q 021380 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 213 ekqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~ 277 (313)
|||||+||++++.++++|++|+|+..||.. +++.|.++.+. +||||||++++.. |++ |++++.|+
T Consensus 468 qrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~ 547 (623)
T PRK10261 468 QRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGP 547 (623)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecC
Confidence 999999999999999999999999999994 44445444332 5799999999876 554 89999998
Q ss_pred hhHHHH
Q 021380 278 PPDVAK 283 (313)
Q Consensus 278 ~~e~~~ 283 (313)
+.++..
T Consensus 548 ~~~i~~ 553 (623)
T PRK10261 548 RRAVFE 553 (623)
T ss_pred HHHHhc
Confidence 888753
No 133
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-34 Score=259.17 Aligned_cols=202 Identities=10% Similarity=0.048 Sum_probs=156.4
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc--ccCCCCceeeeCCCCC----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASSFDSQVKP---- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~--~~~p~~G~i~~~~~~~---- 148 (313)
..+|+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ ...|++|+|.++|.+.
T Consensus 11 ~~~l~~~~l~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~ 86 (260)
T PRK10744 11 PSKIQVRNLNFYYGKFH----ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK 86 (260)
T ss_pred CceEEEEEEEEEeCCeE----EeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc
Confidence 45799999999998765 9999999999999999999999999999999999984 0014799999988542
Q ss_pred ------CCeEEEEeccCCCCCcccCCcccCHHHHHHhc-CCCCCccHHHHHHHHHHhhcC------CCccCCCCCccCCC
Q 021380 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~l~~~------~~~~~~~LSgGekq 215 (313)
.+.++|++|+... +. .|+.+|+.+....+ +.......+++.++++.++.. .+.++.+|||||+|
T Consensus 87 ~~~~~~~~~i~~~~q~~~~-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 163 (260)
T PRK10744 87 QDIALLRAKVGMVFQKPTP-FP--MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQ 163 (260)
T ss_pred cchHHHhcceEEEecCCcc-Cc--CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHH
Confidence 2359999999643 32 69999998765433 222222234567778877642 35677899999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
|++||++++.+++++++|+|+..||.. +.+.|.++.. .+|++|||++.+.. |++ |++++.|++.++.
T Consensus 164 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 164 RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred HHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999994 3444444432 24799999998765 544 8888888877764
Q ss_pred H
Q 021380 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 244 ~ 244 (260)
T PRK10744 244 T 244 (260)
T ss_pred h
Confidence 3
No 134
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.8e-34 Score=260.22 Aligned_cols=196 Identities=16% Similarity=0.153 Sum_probs=154.8
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---------
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--------- 148 (313)
|+++||++.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~~ 73 (252)
T TIGR03005 1 VRFSDVTKRFGILT----VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP---IDEGQIQVEGEQLYHMPGRNGP 73 (252)
T ss_pred CEEEEEEEEeCCee----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccccccccc
Confidence 46899999998766 9999999999999999999999999999999999999 9999999988532
Q ss_pred ------------CCeEEEEeccCCCCCcccCCcccCHHHHHH-hcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccC
Q 021380 149 ------------PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGV 213 (313)
Q Consensus 149 ------------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGe 213 (313)
.+.++|++|+...++ .+|+.+|+.+... ..+.........+.++++.++. ..+..+.+|||||
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~ 151 (252)
T TIGR03005 74 LVPADEKHLRQMRNKIGMVFQSFNLFP--HKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQ 151 (252)
T ss_pred ccccchhHHHHHhhCeEEEecCcccCC--CCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHH
Confidence 235899999864333 4799999987532 2222222223456778888774 3356777999999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCCh
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKP 278 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~ 278 (313)
+||++||++++.+++++++|+|+..||.. +.+.|.++.+ .+|++|||++++.. |++ |++++.|+.
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 231 (252)
T TIGR03005 152 QQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKP 231 (252)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999983 4445555433 25799999998865 444 888888887
Q ss_pred hHHH
Q 021380 279 PDVA 282 (313)
Q Consensus 279 ~e~~ 282 (313)
.++.
T Consensus 232 ~~~~ 235 (252)
T TIGR03005 232 DEIF 235 (252)
T ss_pred HHHh
Confidence 6664
No 135
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-34 Score=257.04 Aligned_cols=199 Identities=12% Similarity=0.134 Sum_probs=155.7
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCceeeeCCCCC-
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~i~~~~~~~- 148 (313)
|++|+++|+++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---~~~~~~~~G~i~i~g~~~~ 73 (250)
T PRK14262 1 EPIIEIENFSAYYGEKK----AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMND---HIPGFRVEGKIYFKGQDIY 73 (250)
T ss_pred CceEEEEeeEEEeCCce----eEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhcccc---CCCCCCcceEEEECCEEcc
Confidence 45899999999998766 9999999999999999999999999999999999986 5 899999998542
Q ss_pred ---------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC-CccHHHHHHHHHHhhcC------CCccCCCCCcc
Q 021380 149 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHG 212 (313)
Q Consensus 149 ---------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~LSgG 212 (313)
.+.++|++|++.. + + .|+.+|+.+.....+... ....+.+.++++.++.. .+..+.+||||
T Consensus 74 ~~~~~~~~~~~~i~~~~q~~~~-~-~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 150 (250)
T PRK14262 74 DPQLDVTEYRKKVGMVFQKPTP-F-P-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGG 150 (250)
T ss_pred cchhhHHHhhhhEEEEecCCcc-C-c-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHH
Confidence 2459999998643 3 2 699999987654333221 12233456667776642 35677899999
Q ss_pred CCCcchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChh
Q 021380 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 213 ekqRv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~ 279 (313)
|+||++||++++.+++++++|+|+..||... ++.|.++.. .+|++|||++.+.. |++ |+++..|+++
T Consensus 151 q~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14262 151 QQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTR 230 (250)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 9999999999999999999999999999944 344444332 25799999998765 544 8888888887
Q ss_pred HHHH
Q 021380 280 DVAK 283 (313)
Q Consensus 280 e~~~ 283 (313)
++..
T Consensus 231 ~~~~ 234 (250)
T PRK14262 231 EIVE 234 (250)
T ss_pred HHHh
Confidence 7643
No 136
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=3.2e-34 Score=252.06 Aligned_cols=180 Identities=16% Similarity=0.175 Sum_probs=144.2
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---------
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--------- 148 (313)
|+++||++.|++.. +|+++||++.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~----~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (213)
T cd03262 1 IEIKNLHKSFGDFH----VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE---PDSGTIIIDGLKLTDDKKNINE 73 (213)
T ss_pred CEEEEEEEEECCeE----eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccchhHHH
Confidence 46899999998766 9999999999999999999999999999999999999 9999999998643
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHH-hcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcc
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~ 224 (313)
.+.++|++|+...++ .+|+.+|+.+... .++.......+.+.++++.++.. .++++.+|||||+||++||++++
T Consensus 74 ~~~~i~~~~q~~~~~~--~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 151 (213)
T cd03262 74 LRQKVGMVFQQFNLFP--HLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA 151 (213)
T ss_pred HHhcceEEecccccCC--CCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHh
Confidence 235899999965333 4799999887543 22222222334567788887743 46778899999999999999999
Q ss_pred cCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 225 LQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 225 ~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
.+++++++|+|+..||.. +.+.|.++.+ .+|++|||++++..
T Consensus 152 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~ 200 (213)
T cd03262 152 MNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFARE 200 (213)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 999999999999999984 4445554433 25799999998754
No 137
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-34 Score=258.76 Aligned_cols=198 Identities=16% Similarity=0.156 Sum_probs=155.3
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
++|+++|+++.|++.. +|+++||++.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 4 ~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 76 (255)
T PRK11300 4 PLLSVSGLMMRFGGLL----AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK---PTGGTILLRGQHIEGLPGHQ 76 (255)
T ss_pred ceEEEeeEEEEECCEE----EEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCcceEEECCEECCCCCHHH
Confidence 3799999999998766 9999999999999999999999999999999999999 9999999998642
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHHHh----------cCCC---C--CccHHHHHHHHHHhhc--CCCccCCCC
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR----------RGAP---W--TFNPLLLLNCLKNLRN--QGSVYAPSF 209 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~----------~~~~---~--~~~~~~~~~~l~~l~~--~~~~~~~~L 209 (313)
...++|++|++..++ .+|+.+|+.+.... ++.+ . ......+.++++.++. ..++++.+|
T Consensus 77 ~~~~~i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 154 (255)
T PRK11300 77 IARMGVVRTFQHVRLFR--EMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNL 154 (255)
T ss_pred HHhcCeEEeccCcccCC--CCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhC
Confidence 123788999865333 47999999875321 1100 0 0122346677777774 346788899
Q ss_pred CccCCCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhc
Q 021380 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHIS 274 (313)
Q Consensus 210 SgGekqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~ 274 (313)
||||+||++||++++.+++++++|+|+..||.. +++.|.++.+ .+|++|||++++.. +++ |+++.
T Consensus 155 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 234 (255)
T PRK11300 155 AYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLA 234 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEe
Confidence 999999999999999999999999999999984 4444444432 24799999999866 444 88888
Q ss_pred cCChhHHH
Q 021380 275 TGKPPDVA 282 (313)
Q Consensus 275 ~G~~~e~~ 282 (313)
.|+++++.
T Consensus 235 ~~~~~~~~ 242 (255)
T PRK11300 235 NGTPEEIR 242 (255)
T ss_pred cCCHHHHh
Confidence 88876653
No 138
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-34 Score=261.95 Aligned_cols=198 Identities=16% Similarity=0.108 Sum_probs=156.5
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
++|+++||++.|+++. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 10 ~~l~i~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 82 (265)
T PRK10575 10 TTFALRNVSFRVPGRT----LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP---PSEGEILLDAQPLESWSSKA 82 (265)
T ss_pred ceEEEeeEEEEECCEE----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEehhhCCHHH
Confidence 4799999999998766 9999999999999999999999999999999999999 9999999998542
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHh-cC---CCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhh
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RG---APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~-~~---~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~ 221 (313)
.+.++|++|+...++ .+|+.+|+.+.... .+ .......+.+.++++.++. ..++++.+|||||+||++||+
T Consensus 83 ~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar 160 (265)
T PRK10575 83 FARKVAYLPQQLPAAE--GMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAM 160 (265)
T ss_pred HhhheEEeccCCCCCC--CccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHH
Confidence 235899999854333 47999998764211 11 1111233456778888774 346778899999999999999
Q ss_pred hcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 222 LVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 222 al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
+++.+++++++|+|+..||.. +++.|.++.+ .+|++|||++++.. |++ |+++..|++.++.
T Consensus 161 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 161 LVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 999999999999999999994 4455555432 24799999998865 444 8888888877654
No 139
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-34 Score=257.08 Aligned_cols=199 Identities=13% Similarity=0.097 Sum_probs=155.2
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
+++++|+++.|++.. +|+|+||+|.+|++++|+||||||||||+++|+|+++...|++|+|.++|.+.
T Consensus 2 ~~~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~ 77 (246)
T PRK14269 2 IAKTTNLNLFYGKKQ----ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77 (246)
T ss_pred ceeeeeeEEEECCEe----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHH
Confidence 588999999998766 99999999999999999999999999999999999741016899999998653
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCC--CCccHHHHHHHHHHhhcC------CCccCCCCCccCCCcchhh
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP--WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~--~~~~~~~~~~~l~~l~~~------~~~~~~~LSgGekqRv~la 220 (313)
.+.++|++|++.. +. .|+.+|+.+.....+.. ......++.++++.++.. .+.++..|||||+||++||
T Consensus 78 ~~~i~~~~q~~~l-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 154 (246)
T PRK14269 78 RKNVGMVFQQPNV-FV--KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIA 154 (246)
T ss_pred hhhEEEEecCCcc-cc--ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHH
Confidence 2358999999643 32 59999998764433321 122334566788887752 3556779999999999999
Q ss_pred hhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 221 ILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 221 ~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
++++.+++++++|+|+..||... .+.|.++.. .+|++|||++++.. |++ |++++.|.+.++.
T Consensus 155 ral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 155 RALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999943 344443322 24799999998765 444 8888888877764
No 140
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-34 Score=289.23 Aligned_cols=205 Identities=16% Similarity=0.164 Sum_probs=162.1
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC-------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------- 147 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~------- 147 (313)
++||+++||++.|++......+|+||||+|.+|+++||+|+||||||||+|+|+|+++ |++|+|.++|..
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~---p~~G~i~~~g~~~~~~~~~ 86 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE---QAGGLVQCDKMLLRRRSRQ 86 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCeEEEECCEEecccccc
Confidence 5689999999999632111239999999999999999999999999999999999999 999999887631
Q ss_pred ---------------CCCeEEEEeccCCCCCcccCCcccCHHHHHHhc-CCCCCccHHHHHHHHHHhhcC-----CCccC
Q 021380 148 ---------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ-----GSVYA 206 (313)
Q Consensus 148 ---------------~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~l~~~-----~~~~~ 206 (313)
..+.++|++|++.....+.+|+.+|+.+..... +.......+++.++|+.++.. .+.++
T Consensus 87 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 166 (623)
T PRK10261 87 VIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYP 166 (623)
T ss_pred ccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCC
Confidence 113589999985311223589999999876542 333333345678889998853 36788
Q ss_pred CCCCccCCCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hh
Q 021380 207 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KR 271 (313)
Q Consensus 207 ~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr 271 (313)
.+|||||||||+||+|++.++++|++|+|+..||. .+++.++++.+ .+|+||||++++.. |++ |+
T Consensus 167 ~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~ 246 (623)
T PRK10261 167 HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGE 246 (623)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCe
Confidence 89999999999999999999999999999999999 45555555542 24799999999876 554 88
Q ss_pred hhccCChhHHH
Q 021380 272 HISTGKPPDVA 282 (313)
Q Consensus 272 ~v~~G~~~e~~ 282 (313)
+++.|++.++.
T Consensus 247 i~~~g~~~~~~ 257 (623)
T PRK10261 247 AVETGSVEQIF 257 (623)
T ss_pred ecccCCHHHhh
Confidence 88888887764
No 141
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-34 Score=256.97 Aligned_cols=198 Identities=16% Similarity=0.128 Sum_probs=154.7
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHh--cccCC---CCceeeeCCCCC--
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWP---QKASSFDSQVKP-- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll--~~~~p---~~G~i~~~~~~~-- 148 (313)
++|+++||++.|+++. +|+++||+|.+|++++|+||||||||||+++|+|+. . | ++|+|.++|.+.
T Consensus 4 ~~l~~~~l~~~~~~~~----~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---p~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14239 4 PILQVSDLSVYYNKKK----ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLN---PEVTITGSIVYNGHNIYS 76 (252)
T ss_pred ceEEEEeeEEEECCee----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccC---CCCCccceEEECCEECcC
Confidence 4799999999998766 999999999999999999999999999999999984 3 5 599999998542
Q ss_pred --------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC-CccHHHHHHHHHHhhc------CCCccCCCCCccC
Q 021380 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGV 213 (313)
Q Consensus 149 --------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~LSgGe 213 (313)
.+.++|++|+... +. +|+.+|+.+.....+... ......+.++++.++. ..+..+.+||+||
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 153 (252)
T PRK14239 77 PRTDTVDLRKEIGMVFQQPNP-FP--MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQ 153 (252)
T ss_pred cccchHhhhhcEEEEecCCcc-Cc--CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHH
Confidence 2359999999643 32 699999987654433221 1123445666777653 2356778999999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccChhhH----HHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhH
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE~~~----~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e 280 (313)
+||++||++++.+++++++|+|+..||.... +.|.++.. .+|++|||++++.. |++ |++++.|.+.+
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T PRK14239 154 QQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQ 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999444 44444332 25799999998765 554 88888888877
Q ss_pred HHH
Q 021380 281 VAK 283 (313)
Q Consensus 281 ~~~ 283 (313)
+..
T Consensus 234 ~~~ 236 (252)
T PRK14239 234 MFM 236 (252)
T ss_pred HHh
Confidence 643
No 142
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=3.8e-34 Score=251.74 Aligned_cols=180 Identities=16% Similarity=0.074 Sum_probs=143.9
Q ss_pred EEEccceeEccc-cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~-~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
|+++|+++.|++ +. +|+|+||++.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~~----~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~ 73 (214)
T cd03292 1 IEFINVTKTYPNGTA----ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL---PTSGTIRVNGQDVSDLRGRAI 73 (214)
T ss_pred CEEEEEEEEeCCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcccCCHHHH
Confidence 468999999964 45 9999999999999999999999999999999999999 9999999988642
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhc
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al 223 (313)
.+.++|++|++..++ .+|+.+|+.+....++.......+++.++++.++. ..+.++.+|||||+||++||+++
T Consensus 74 ~~~~~~i~~v~q~~~~~~--~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 151 (214)
T cd03292 74 PYLRRKIGVVFQDFRLLP--DRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAI 151 (214)
T ss_pred HHHHHheEEEecCchhcc--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHH
Confidence 135899999964333 47999999887554433222233456778888774 34567789999999999999999
Q ss_pred ccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 224 GLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
+.+++++++|+|+..||.. +.+.|.++.+ .+|++|||++.+..
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~ 201 (214)
T cd03292 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDT 201 (214)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 9999999999999999983 4444444432 25799999988764
No 143
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-34 Score=261.76 Aligned_cols=199 Identities=16% Similarity=0.173 Sum_probs=156.7
Q ss_pred CeEEEccceeEcc--ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----
Q 021380 76 PVVEARCMDEVYD--ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~--~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~----- 148 (313)
++|+++|+++.|+ ++. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 6 ~~l~~~nl~~~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~ 78 (271)
T PRK13632 6 VMIKVENVSFSYPNSENN----ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK---PQSGEIKIDGITISKENL 78 (271)
T ss_pred eEEEEEeEEEEcCCCCcc----ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEecCcCCH
Confidence 4799999999995 344 9999999999999999999999999999999999999 9999999998652
Q ss_pred ---CCeEEEEeccCC-CCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhh
Q 021380 149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ---~~~i~~v~q~~~-~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~a 222 (313)
.+.++|++|++. .++ .+|+.+|+.+.....+.........+.++++.++. ..+..+..|||||+||++||++
T Consensus 79 ~~~~~~i~~v~q~~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lara 156 (271)
T PRK13632 79 KEIRKKIGIIFQNPDNQFI--GATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASV 156 (271)
T ss_pred HHHhcceEEEEeCHHHhcC--cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHH
Confidence 235899999952 222 37999999876543332222223456778888874 3567788999999999999999
Q ss_pred cccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
++.+++++++|+|+..||. .+++.|.++.+ .+|++|||++.+.. +++ |+++..|++.++..
T Consensus 157 l~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 157 LALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999 44455555432 24699999998754 433 78777787766543
No 144
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-35 Score=247.39 Aligned_cols=200 Identities=15% Similarity=0.185 Sum_probs=160.9
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------- 149 (313)
||+++||+|.|+++. +|+++|++|++|.+++|||||||||||||.+++.+++ .++|+|.++|.+..
T Consensus 1 MI~i~nv~K~y~~~~----vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~---~d~G~i~i~g~~~~~~~s~~L 73 (252)
T COG4604 1 MITIENVSKSYGTKV----VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK---KDSGEITIDGLELTSTPSKEL 73 (252)
T ss_pred CeeehhhhHhhCCEE----eeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc---ccCceEEEeeeecccCChHHH
Confidence 589999999999988 9999999999999999999999999999999999999 99999999997632
Q ss_pred -CeEEEEeccCCCCCcccCCcccCHHHHHHh--cCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcc
Q 021380 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHAR--RGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 150 -~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~--~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~ 224 (313)
+.+.++-|.... +..+||++-+.|+..- .|.+.++++..+.+.++.+. ...+++..+||||||||..+|..++
T Consensus 74 Ak~lSILkQ~N~i--~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVla 151 (252)
T COG4604 74 AKKLSILKQENHI--NSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLA 151 (252)
T ss_pred HHHHHHHHhhchh--hheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeee
Confidence 346777787543 3358999999887643 35566778888999999988 4567889999999999999965555
Q ss_pred cCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHHHH
Q 021380 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWR 285 (313)
Q Consensus 225 ~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~~ 285 (313)
.+.+.+++|+|+.-||- .+++.++.+.+ .+++|-||.+++.. .++ |+++..|++++++...
T Consensus 152 QdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~~ 227 (252)
T COG4604 152 QDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPE 227 (252)
T ss_pred ccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCHH
Confidence 55555566666655554 44455554443 35799999999987 555 9999999999987653
No 145
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-34 Score=245.46 Aligned_cols=199 Identities=17% Similarity=0.180 Sum_probs=164.8
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------- 149 (313)
||+++||++...++. +|+++||++.+||+++|+||||||||||||.|+|.+. |++|++.++|.+..
T Consensus 1 mi~a~nls~~~~Gr~----ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~---p~~G~v~~~g~~l~~~~~~~l 73 (259)
T COG4559 1 MIRAENLSYSLAGRR----LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS---PDSGEVTLNGVPLNSWPPEEL 73 (259)
T ss_pred CeeeeeeEEEeecce----eccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC---CCCCeEeeCCcChhhCCHHHH
Confidence 589999999999988 9999999999999999999999999999999999999 99999999997632
Q ss_pred -CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCC--ccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcc
Q 021380 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT--FNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 150 -~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~--~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~ 224 (313)
+.-++++|+...-++ +||.|-+.++..-++.... .+...+...|...+ ....+.+.+|||||||||.+|+.++
T Consensus 74 A~~raVlpQ~s~laFp--Ftv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLa 151 (259)
T COG4559 74 ARHRAVLPQNSSLAFP--FTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLA 151 (259)
T ss_pred HHHhhhcccCcccccc--eEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHH
Confidence 345789998654443 7999999887665543333 44445677888777 4567788999999999999999976
Q ss_pred c------CccEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 225 L------QHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 225 ~------~a~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
. ..|.|++|+|+.-||- .+++..+++..+ ++.|-||++.+.. |++ ||+++.|.|.+++..
T Consensus 152 Ql~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~ 231 (259)
T COG4559 152 QLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTD 231 (259)
T ss_pred HccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCH
Confidence 4 3468899999999997 677777777765 4689999999887 666 999999999998644
No 146
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=5.3e-34 Score=257.25 Aligned_cols=201 Identities=15% Similarity=0.157 Sum_probs=155.3
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC-----C--
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----P-- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~-----~-- 148 (313)
++|+++||++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+ .
T Consensus 2 ~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 74 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGK----GCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA---PDHGTATYIMRSGAELELYQ 74 (253)
T ss_pred ceEEEeeeEEEeCCce----EeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEEeccccccccccc
Confidence 4799999999998766 8999999999999999999999999999999999999 999999998754 1
Q ss_pred ----------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCC-CCCccHHHHHHHHHHhhcC---CCccCCCCCccCC
Q 021380 149 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVG 214 (313)
Q Consensus 149 ----------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGek 214 (313)
.+.++|++|++.......+++.+|+.+....... ........+.++++.++.. .+..+..|||||+
T Consensus 75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~ 154 (253)
T TIGR02323 75 LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQ 154 (253)
T ss_pred CCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHH
Confidence 1348999999643233345777787654322111 1112235667888888753 3567789999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChh
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~ 279 (313)
||++||++++.++++|++|+|+..||.. +++.+.++.+ .+|++|||++++.. +++ |+++..|++.
T Consensus 155 qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~ 234 (253)
T TIGR02323 155 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTD 234 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999994 4444444432 24799999998875 444 8888888876
Q ss_pred HHHH
Q 021380 280 DVAK 283 (313)
Q Consensus 280 e~~~ 283 (313)
++..
T Consensus 235 ~~~~ 238 (253)
T TIGR02323 235 QVLD 238 (253)
T ss_pred HHhc
Confidence 6643
No 147
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=4.4e-34 Score=260.04 Aligned_cols=201 Identities=17% Similarity=0.108 Sum_probs=158.2
Q ss_pred CCeEEEccceeEccc---------cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCC
Q 021380 75 IPVVEARCMDEVYDA---------LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~---------~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~ 145 (313)
|++|+++||++.|++ +. +|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|
T Consensus 1 ~~~l~~~nl~~~~~~~~~~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~sG~i~~~g 73 (268)
T PRK10419 1 MTLLNVSGLSHHYAHGGLSGKHQHQT----VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES---PSQGNVSWRG 73 (268)
T ss_pred CceEEEeceEEEecCCccccccCcee----eEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECC
Confidence 568999999999973 44 9999999999999999999999999999999999999 9999999998
Q ss_pred CCC-----------CCeEEEEeccCCCCCcccCCcccCHHHHHHh-cCCCCCccHHHHHHHHHHhhcC---CCccCCCCC
Q 021380 146 VKP-----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFD 210 (313)
Q Consensus 146 ~~~-----------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LS 210 (313)
.+. .+.++|++|+....+.+..++.+++.+.... .+.........+.++++.++.. .+.++..||
T Consensus 74 ~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS 153 (268)
T PRK10419 74 EPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLS 153 (268)
T ss_pred EeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCC
Confidence 642 2359999999632222347888887654332 1222222334577888888753 366788999
Q ss_pred ccCCCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhcc
Q 021380 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHIST 275 (313)
Q Consensus 211 gGekqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~ 275 (313)
+||+||++||++++.+++++++|+|+..||.. +.+.|.++.+ .+|++|||++.+.. +++ |++++.
T Consensus 154 ~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~ 233 (268)
T PRK10419 154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVET 233 (268)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeee
Confidence 99999999999999999999999999999984 4555555543 24799999998875 444 888888
Q ss_pred CChhHHH
Q 021380 276 GKPPDVA 282 (313)
Q Consensus 276 G~~~e~~ 282 (313)
|++.++.
T Consensus 234 g~~~~~~ 240 (268)
T PRK10419 234 QPVGDKL 240 (268)
T ss_pred CChhhcc
Confidence 8877754
No 148
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-34 Score=284.33 Aligned_cols=198 Identities=16% Similarity=0.156 Sum_probs=157.8
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC--CCceeeeCCCCC----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKASSFDSQVKP---- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p--~~G~i~~~~~~~---- 148 (313)
++||+++||++.|++.. +|+||||+|.+|+++||+||||||||||+|+|+|+++ | ++|+|.++|.+.
T Consensus 3 ~~~l~~~nl~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~G~i~~~g~~~~~~~ 75 (506)
T PRK13549 3 EYLLEMKNITKTFGGVK----ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP---HGTYEGEIIFEGEELQASN 75 (506)
T ss_pred CceEEEeeeEEEeCCeE----eecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCC
Confidence 35799999999998766 9999999999999999999999999999999999997 7 799999988542
Q ss_pred -----CCeEEEEeccCCCCCcccCCcccCHHHHHHhc--C-CCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcch
Q 021380 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--G-APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 149 -----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~--~-~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~ 218 (313)
.+.++|++|+...++ .+|+.+|+.+....+ + .......+++.++++.++. ..++++.+||||||||++
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~ 153 (506)
T PRK13549 76 IRDTERAGIAIIHQELALVK--ELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVE 153 (506)
T ss_pred HHHHHHCCeEEEEeccccCC--CCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHH
Confidence 245899999964333 489999998764322 1 1111223457788888884 346778899999999999
Q ss_pred hhhhcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHH
Q 021380 219 DDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 219 la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~ 281 (313)
||++++.++++|++|||+..||+. +++.|.++.+ .+|++|||++.+.. |++ |+++..|++.++
T Consensus 154 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 154 IAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 999999999999999999999994 4444444432 25799999998876 554 888888877665
No 149
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-34 Score=254.84 Aligned_cols=196 Identities=16% Similarity=0.130 Sum_probs=153.7
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------CC
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 150 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------~~ 150 (313)
||+++||++.|++.. .++||+|.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+. .+
T Consensus 1 ~l~~~~l~~~~~~~~------~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 71 (232)
T PRK10771 1 MLKLTDITWLYHHLP------MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT---PASGSLTLNGQDHTTTPPSRR 71 (232)
T ss_pred CeEEEEEEEEECCcc------ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCeecCcCChhhc
Confidence 488999999997532 38999999999999999999999999999999999 9999999998652 24
Q ss_pred eEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCcc
Q 021380 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~ 228 (313)
.++|++|++..++ .+|+.+|+.+..............++.++++.++. ..++++..|||||+||++||++++.+++
T Consensus 72 ~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 149 (232)
T PRK10771 72 PVSMLFQENNLFS--HLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQP 149 (232)
T ss_pred cEEEEeccccccc--CCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 5899999964333 47999998764321101112234567788888874 3567788999999999999999999999
Q ss_pred EEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 229 VVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 229 ~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++++|+|+..||.. +.+.|.++.+ .+|++|||++++.. |++ |++++.|++.++..
T Consensus 150 lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 150 ILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999994 4455555532 25799999998765 544 88888888766643
No 150
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=4.3e-34 Score=249.98 Aligned_cols=176 Identities=11% Similarity=0.007 Sum_probs=142.2
Q ss_pred EccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----------
Q 021380 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----------- 148 (313)
Q Consensus 80 v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~----------- 148 (313)
++||++.|+++. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 i~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~ 73 (206)
T TIGR03608 1 LKNISKKFGDKI----ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK---FDSGQVYLNGKETPPLNSKKASKF 73 (206)
T ss_pred CcceEEEECCEE----EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccchhhHHHH
Confidence 478999998766 9999999999999999999999999999999999999 9999999998651
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhccc
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
.+.++|++|++..++ .+|+.+|+.+.....+.......+++.++++.++. ..++++.+||+||+||++||++++.
T Consensus 74 ~~~~i~~~~q~~~~~~--~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~ 151 (206)
T TIGR03608 74 RREKLGYLFQNFALIE--NETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILK 151 (206)
T ss_pred HHhCeeEEecchhhcc--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 235899999964333 47999999886544333322334567788888874 3467788999999999999999999
Q ss_pred CccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHH
Q 021380 226 QHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTA 264 (313)
Q Consensus 226 ~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~ 264 (313)
+++++++|+|+..||.. +++.|.++.+ .+|++|||++..
T Consensus 152 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 197 (206)
T TIGR03608 152 DPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA 197 (206)
T ss_pred CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 99999999999999994 4444444432 247999999864
No 151
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-33 Score=257.57 Aligned_cols=202 Identities=11% Similarity=0.109 Sum_probs=154.2
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCceeeeCCCCC---
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVKP--- 148 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~--~~p~~G~i~~~~~~~--- 148 (313)
..++|+++|+++.|++.. +|+++||+|.+|+++||+|+||||||||+++|+|+++. ..|++|+|.++|.+.
T Consensus 18 ~~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 93 (268)
T PRK14248 18 KEHILEVKDLSIYYGEKR----AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDS 93 (268)
T ss_pred CCceEEEEEEEEEeCCce----eeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccc
Confidence 345899999999998766 99999999999999999999999999999999998620 015899999988542
Q ss_pred -------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC-CccHHHHHHHHHHhhcC------CCccCCCCCccCC
Q 021380 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (313)
Q Consensus 149 -------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~LSgGek 214 (313)
.+.++|++|++.. +. .|+.+|+.+.....+... ......+.+.++.++.. .++++.+|||||+
T Consensus 94 ~~~~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 94 NINVVNLRREIGMVFQKPNP-FP--KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQ 170 (268)
T ss_pred cccHHHHhccEEEEecCCcc-Cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHH
Confidence 2358999999643 32 489999887643332211 11223455666666532 3567789999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~ 281 (313)
||++||++++.+++++++|+|+..||.. +.+.|.++.. .+|++|||++++.. |++ |++++.|++.++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999994 4444444432 25799999998765 554 888888887766
Q ss_pred H
Q 021380 282 A 282 (313)
Q Consensus 282 ~ 282 (313)
.
T Consensus 251 ~ 251 (268)
T PRK14248 251 F 251 (268)
T ss_pred H
Confidence 4
No 152
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=4.1e-34 Score=259.35 Aligned_cols=197 Identities=15% Similarity=0.109 Sum_probs=155.8
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC---CceeeeCCCCC----
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASSFDSQVKP---- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~---~G~i~~~~~~~---- 148 (313)
++|+++||++.|++.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |+ +|+|.++|.+.
T Consensus 3 ~~l~~~nl~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~~~~G~i~~~g~~~~~~~ 75 (262)
T PRK09984 3 TIIRVEKLAKTFNQHQ----ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT---GDKSAGSHIELLGRTVQREG 75 (262)
T ss_pred cEEEEeeEEEEeCCeE----EEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCCceEEEECCEeccccc
Confidence 4799999999998776 9999999999999999999999999999999999998 76 49999998542
Q ss_pred ---------CCeEEEEeccCCCCCcccCCcccCHHHHHHhc--------CCCCCccHHHHHHHHHHhhcC--CCccCCCC
Q 021380 149 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--------GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSF 209 (313)
Q Consensus 149 ---------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~--------~~~~~~~~~~~~~~l~~l~~~--~~~~~~~L 209 (313)
...++|++|+...++ .+|+.+|+.+..... +........++.++++.++.. .++.+..|
T Consensus 76 ~~~~~~~~~~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 153 (262)
T PRK09984 76 RLARDIRKSRANTGYIFQQFNLVN--RLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTL 153 (262)
T ss_pred ccchhHHHHHhheEEEcccccccc--CCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCcccc
Confidence 124899999964333 479999997653210 111122334677888888743 46778899
Q ss_pred CccCCCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhc
Q 021380 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHIS 274 (313)
Q Consensus 210 SgGekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~ 274 (313)
|+||+||++||++++.++++|++|+|+..||. .+.+.|.++.+ .+|++|||++++.. |++ |+++.
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~ 233 (262)
T PRK09984 154 SGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFY 233 (262)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999 34455555542 25799999998765 544 78888
Q ss_pred cCChhHH
Q 021380 275 TGKPPDV 281 (313)
Q Consensus 275 ~G~~~e~ 281 (313)
.|++.++
T Consensus 234 ~g~~~~~ 240 (262)
T PRK09984 234 DGSSQQF 240 (262)
T ss_pred eCCHHHh
Confidence 8887764
No 153
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.8e-34 Score=255.43 Aligned_cols=202 Identities=10% Similarity=0.079 Sum_probs=155.0
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc--ccCCCCceeeeCCCCC-----
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~--~~~p~~G~i~~~~~~~----- 148 (313)
..|+++|+++.|++.. +|+|+||+|++|+++||+|+||||||||+++|+|+++ ...|++|+|.++|.+.
T Consensus 3 ~~l~~~nl~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 3 NKVKLEQLNVHFGKNH----AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred cEEEEEEEEEEeCCee----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 3689999999998766 9999999999999999999999999999999999984 0012689999988542
Q ss_pred -----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCC-CCccHHHHHHHHHHhhcC------CCccCCCCCccCCCc
Q 021380 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP 216 (313)
Q Consensus 149 -----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~l~~~------~~~~~~~LSgGekqR 216 (313)
.+.++|++|+...+. .+|+.+|+.+.....+.. .....+.+.++++.++.. .+..+.+|||||+||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14256 79 DPVSIRRRVGMVFQKPNPFP--AMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQR 156 (252)
T ss_pred ChHHhhccEEEEecCCCCCC--cCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHH
Confidence 235899999965333 479999998754433321 112234466777777642 245677999999999
Q ss_pred chhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 217 VEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 217 v~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++||++++.+++++++|+|+..||.. +.+.|.++.+ .+|++|||++++.. |++ |+++..|++.++..
T Consensus 157 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14256 157 LCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFT 236 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999994 3344444432 35799999998865 544 88888888777643
No 154
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-34 Score=255.39 Aligned_cols=201 Identities=11% Similarity=0.111 Sum_probs=154.2
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCceeeeCCCCC----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVKP---- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~--~~p~~G~i~~~~~~~---- 148 (313)
|.+|+++||++.|+++. +|+|+||+|++||+++|+||||||||||+++|+|+++. ..|++|+|.++|.+.
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14240 1 MGKISVKDLDLFYGDFQ----ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD 76 (250)
T ss_pred CCeEEEEEEEEEECCce----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 34689999999998766 99999999999999999999999999999999998750 001699999998542
Q ss_pred ------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC-CccHHHHHHHHHHhhc------CCCccCCCCCccCCC
Q 021380 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~LSgGekq 215 (313)
...++|++|++.. + + +|+.+|+.+....++... ....+.+.++++.++. ..+.++.+|||||+|
T Consensus 77 ~~~~~~~~~i~~~~q~~~~-~-~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 153 (250)
T PRK14240 77 IDVNQLRKRVGMVFQQPNP-F-P-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQ 153 (250)
T ss_pred cchHHHhccEEEEecCCcc-C-c-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHH
Confidence 2358999998543 3 2 699999987654443221 1223455666776653 235677899999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
|++||++++.+++++++|+|+..||.. +.+.|.++.. .+|++|||++.+.. |++ |+++..|.+.++.
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 154 RLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999994 3444444432 25799999998766 544 8888888877664
No 155
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.9e-34 Score=249.09 Aligned_cols=178 Identities=17% Similarity=0.082 Sum_probs=145.5
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------C
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------P 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------~ 149 (313)
||+++|+++.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~v~~~g~~~~~~~~~~~ 73 (204)
T PRK13538 1 MLEARNLACERDERI----LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR---PDAGEVLWQGEPIRRQRDEYH 73 (204)
T ss_pred CeEEEEEEEEECCEE----EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccchHHhh
Confidence 488999999998766 9999999999999999999999999999999999999 9999999998642 2
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a 227 (313)
+.++|++|+...+ +.+|+.+|+.+....++. ...+.+.++++.++. ..++++..|||||+||++||++++.++
T Consensus 74 ~~~~~~~~~~~~~--~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p 148 (204)
T PRK13538 74 QDLLYLGHQPGIK--TELTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRA 148 (204)
T ss_pred hheEEeCCccccC--cCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCC
Confidence 3588999885432 247999999876544321 234567788888874 346678899999999999999999999
Q ss_pred cEEEEcCcccccChhh----HHHHHHhhc---CeEEEEcChHHHHH
Q 021380 228 KVVIVDGNYLFLDGGV----WKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 228 ~~li~d~~~llLDE~~----~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
+++++|+|+..||... ++.|.++.+ .+|++|||.+++..
T Consensus 149 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 149 PLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVAS 194 (204)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhcc
Confidence 9999999999999944 444444322 25799999998755
No 156
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-34 Score=255.84 Aligned_cols=198 Identities=13% Similarity=0.079 Sum_probs=155.4
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHH---hcccCC--CCceeeeCCCCC--
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR---INKIWP--QKASSFDSQVKP-- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gl---l~~~~p--~~G~i~~~~~~~-- 148 (313)
++|+++|+++.|+++. +|+|+||+|++|+++||+||||||||||+++|+|+ ++ | ++|+|.++|.+.
T Consensus 2 ~~l~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~---~~~~~G~i~~~g~~~~~ 74 (250)
T PRK14245 2 VKIDARDVNFWYGDFH----ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIP---ATRLEGEIRIDGRNIYD 74 (250)
T ss_pred cEEEEEEEEEEECCEe----EEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccC---CCCCceEEEECCEeccc
Confidence 5799999999998766 99999999999999999999999999999999997 34 4 589999998643
Q ss_pred --------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC-CccHHHHHHHHHHhhcC------CCccCCCCCccC
Q 021380 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 213 (313)
Q Consensus 149 --------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~LSgGe 213 (313)
.+.++|++|++.. +. .|+.+|+.+.....+... ......+.++++.++.. .+..+..|||||
T Consensus 75 ~~~~~~~~~~~i~~v~q~~~~-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 151 (250)
T PRK14245 75 KGVQVDELRKNVGMVFQRPNP-FP--KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQ 151 (250)
T ss_pred ccccHHHHhhheEEEecCCcc-Cc--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHH
Confidence 1348999999643 32 599999987654433221 12234566777777642 355677999999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhH
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e 280 (313)
+||++||++++.+++++++|+|+..||... .+.|.++.. .+|++|||++.+.. |++ |++++.|++++
T Consensus 152 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~ 231 (250)
T PRK14245 152 QQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKK 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999943 444444332 25799999998865 554 88889998887
Q ss_pred HHH
Q 021380 281 VAK 283 (313)
Q Consensus 281 ~~~ 283 (313)
+..
T Consensus 232 ~~~ 234 (250)
T PRK14245 232 IFT 234 (250)
T ss_pred Hhc
Confidence 754
No 157
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-34 Score=262.80 Aligned_cols=202 Identities=15% Similarity=0.178 Sum_probs=158.7
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC---ceeeeCCCCC----
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---ASSFDSQVKP---- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~---G~i~~~~~~~---- 148 (313)
.+|+++|+++.|++.. ..+|+++||+|.+|+++||+||||||||||+++|+|+++ |++ |+|.++|.+.
T Consensus 4 ~~l~i~~l~~~~~~~~--~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~---p~~g~~G~i~i~g~~~~~~~ 78 (282)
T PRK13640 4 NIVEFKHVSFTYPDSK--KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL---PDDNPNSKITVDGITLTAKT 78 (282)
T ss_pred ceEEEEEEEEEcCCCC--ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC---CCCCCCcEEEECCEECCcCC
Confidence 3799999999996421 128999999999999999999999999999999999998 887 8999998653
Q ss_pred ----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhh
Q 021380 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~a 222 (313)
...++|++|++...+. ..|+.+|+.+.....+.......+++.++++.++.. .++++..|||||+||++||++
T Consensus 79 ~~~~~~~ig~v~q~~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~lara 157 (282)
T PRK13640 79 VWDIREKVGIVFQNPDNQFV-GATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGI 157 (282)
T ss_pred HHHHHhheEEEEECHHHhhc-cCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHH
Confidence 2358999999532222 379999998765444333222334577788888743 467788999999999999999
Q ss_pred cccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
++.+++++++|+|+..||. .+.+.|.++.. .+|++|||++++.. |++ |++++.|+++++..
T Consensus 158 l~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 158 LAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999 44455555432 24799999998854 444 89899998887654
No 158
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-34 Score=263.40 Aligned_cols=202 Identities=12% Similarity=0.049 Sum_probs=155.3
Q ss_pred eEEEccceeEcccccc-ccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~-~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
.|+++||++.|+++.. ...+|+|+||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 82 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII---SETGQTIVGDYAIPANLKKI 82 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEcccccccc
Confidence 5899999999975310 1238999999999999999999999999999999999999 9999999988532
Q ss_pred ------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc---CCCccCCCCCccCCCcchh
Q 021380 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 149 ------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~LSgGekqRv~l 219 (313)
.+.++|++|++..... ..|+.+|+.+.....+.........+.++++.++. ..++++.+|||||+||++|
T Consensus 83 ~~~~~~~~~i~~v~q~~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~l 161 (289)
T PRK13645 83 KEVKRLRKEIGLVFQFPEYQLF-QETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVAL 161 (289)
T ss_pred ccHHHHhccEEEEEeCcchhhh-hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHH
Confidence 2358999998532122 25899999876543332222223455677777774 2466778999999999999
Q ss_pred hhhcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 220 DILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 220 a~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
|++++.++++|++|+|+..||.. +++.|.++.. .+|++|||++++.. |++ |+++..|.+.++.
T Consensus 162 aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 162 AGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999993 4444444432 25799999998765 444 8888888877764
No 159
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-34 Score=259.89 Aligned_cols=199 Identities=13% Similarity=0.156 Sum_probs=157.6
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
.+|+++||+++|++.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 6 ~~l~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~ 78 (265)
T PRK10253 6 ARLRGEQLTLGYGKYT----VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT---PAHGHVWLDGEHIQHYASKE 78 (265)
T ss_pred cEEEEEEEEEEECCEE----EeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEEhhhCCHHH
Confidence 4799999999998766 9999999999999999999999999999999999999 9999999998642
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhc-C---CCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhh
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-G---APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~-~---~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~ 221 (313)
...++|++|+...++ .+|+.+|+.+..... + .........+.++++.++. ..++++..|||||+||++||+
T Consensus 79 ~~~~i~~v~q~~~~~~--~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lar 156 (265)
T PRK10253 79 VARRIGLLAQNATTPG--DITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAM 156 (265)
T ss_pred HhhheEEeeccCcCCC--CCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHH
Confidence 235899999965433 378999887542111 1 0111223456778888774 346788899999999999999
Q ss_pred hcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 222 LVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 222 al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
+++.+++++++|+|+..||.. +.+.|.++.+ .+|++|||++++.. |++ |+++..|++.++..
T Consensus 157 al~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 157 VLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 999999999999999999994 4455555433 25799999998776 544 88888888877653
No 160
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.3e-34 Score=283.55 Aligned_cols=197 Identities=17% Similarity=0.164 Sum_probs=156.6
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
+||+++|+++.|++.. +|+|+||+|.+|+++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 3 ~~i~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~ 75 (501)
T PRK10762 3 ALLQLKGIDKAFPGVK----ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT---RDAGSILYLGKEVTFNGPKS 75 (501)
T ss_pred ceEEEeeeEEEeCCeE----EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence 4799999999998766 9999999999999999999999999999999999999 9999999988542
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHHHhcC----CCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhh
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG----APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~----~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la 220 (313)
.+.++|++|+...++ .+|+.+|+.++...+. .......+++.++++.++.. .++++.+||||||||++||
T Consensus 76 ~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 76 SQEAGIGIIHQELNLIP--QLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred HHhCCEEEEEcchhccC--CCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHH
Confidence 235899999864333 4899999987543221 11111234567888888843 4667889999999999999
Q ss_pred hhcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHH
Q 021380 221 ILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 221 ~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~ 281 (313)
++++.++++|++|+|+..||.. +++.|.++.+ .+|++|||++++.. |++ |+++..|.+.++
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 9999999999999999999994 4444444433 25799999998876 554 888877776654
No 161
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-34 Score=255.53 Aligned_cols=198 Identities=12% Similarity=0.073 Sum_probs=153.6
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCceeeeCCCCC-
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~i~~~~~~~- 148 (313)
|++|+++|+++.|+++. +|+++||+|.+|++++|+||||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~~ 73 (249)
T PRK14253 1 MNKFNIENLDLFYGENQ----ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMND---LIEGVKITGKLTMDGEDIY 73 (249)
T ss_pred CCeEEEeccEEEECCee----eeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcc---cccCCCCceEEEECCEEcc
Confidence 45799999999998766 9999999999999999999999999999999999997 6 489999988542
Q ss_pred --------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC-CccHHHHHHHHHHhhc------CCCccCCCCCccC
Q 021380 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGV 213 (313)
Q Consensus 149 --------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~LSgGe 213 (313)
.+.++|++|++.. +. .|+.+|+.+.....+... ....+.+.++++.++. ..+.++.+|||||
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~-~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~ 150 (249)
T PRK14253 74 GNIDVADLRIKVGMVFQKPNP-FP--MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQ 150 (249)
T ss_pred cccchHHHHhheeEEecCCCc-Cc--ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHH
Confidence 2358999999643 32 699999987644333221 1122345556666653 2345677999999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhH
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e 280 (313)
+||++||++++.+++++++|+|+..||.. +.+.|.++.. .+|++|||++++.. |++ |+++..|++.+
T Consensus 151 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 230 (249)
T PRK14253 151 QQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQV 230 (249)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999994 3344444432 25799999998776 444 88888888766
Q ss_pred HH
Q 021380 281 VA 282 (313)
Q Consensus 281 ~~ 282 (313)
+.
T Consensus 231 ~~ 232 (249)
T PRK14253 231 IF 232 (249)
T ss_pred HH
Confidence 53
No 162
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=4.2e-34 Score=258.45 Aligned_cols=196 Identities=15% Similarity=0.126 Sum_probs=155.1
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------C
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------P 149 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--------~ 149 (313)
|+++|+++.|++.. +|+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 2 l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 74 (256)
T TIGR03873 2 LRLSRVSWSAGGRL----IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR---PDAGTVDLAGVDLHGLSRRARA 74 (256)
T ss_pred ceEEeEEEEECCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEEcccCCHHHHh
Confidence 67899999998776 9999999999999999999999999999999999999 9999999998542 2
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHH-h---cCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHA-R---RGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~-~---~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al 223 (313)
+.++|++|+...++ .+|+.+|+.+... . +..+.....+++.++++.++. ..+.++..|||||+||++||+++
T Consensus 75 ~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 152 (256)
T TIGR03873 75 RRVALVEQDSDTAV--PLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARAL 152 (256)
T ss_pred hheEEecccCccCC--CCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 35899999863322 4799999877421 1 111112233456778888774 34677889999999999999999
Q ss_pred ccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 224 GLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
+.+++++++|+|+..||.. +.+.|.++.+ .+|++|||++.+.. |++ |++++.|+.+++.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 153 AQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225 (256)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence 9999999999999999994 3444444432 24799999999865 554 8888888877654
No 163
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-33 Score=259.28 Aligned_cols=201 Identities=11% Similarity=0.065 Sum_probs=156.6
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCceeeeCCCCC---
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP--- 148 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~--~p~~G~i~~~~~~~--- 148 (313)
+.++|+++||++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++.. .|++|+|.++|.+.
T Consensus 36 ~~~~l~i~~l~~~~~~~~----il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~ 111 (285)
T PRK14254 36 GETVIEARDLNVFYGDEQ----ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDA 111 (285)
T ss_pred CCceEEEEEEEEEECCEe----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccc
Confidence 456899999999998766 999999999999999999999999999999999998510 04899999988542
Q ss_pred -------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC------CCccCCCCCccCCC
Q 021380 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (313)
Q Consensus 149 -------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~------~~~~~~~LSgGekq 215 (313)
.+.++|++|+... +. .|+.+|+.+.....+.+. ....++.++++.++.. .+.++.+|||||||
T Consensus 112 ~~~~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 112 DVDPVALRRRIGMVFQKPNP-FP--KSIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQ 187 (285)
T ss_pred ccchHhhhccEEEEecCCcc-Cc--CCHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHH
Confidence 2358999999643 32 489999987655443322 2344567778777642 35677899999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HH-H----hhhhccCChhHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RV-L----KRHISTGKPPDV 281 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rv-i----gr~v~~G~~~e~ 281 (313)
|++||++++.++++|++|+|+..||.. +.+.|.++.+ .+|++|||++++.. |+ + |+++..|.+.++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999994 4444444433 25799999998866 53 2 788888877665
Q ss_pred H
Q 021380 282 A 282 (313)
Q Consensus 282 ~ 282 (313)
.
T Consensus 268 ~ 268 (285)
T PRK14254 268 F 268 (285)
T ss_pred H
Confidence 4
No 164
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-34 Score=260.30 Aligned_cols=202 Identities=16% Similarity=0.162 Sum_probs=157.8
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
++|+++|+++.|++.. ..+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 6 ~~l~i~~l~~~~~~~~--~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~ 80 (269)
T PRK13648 6 SIIVFKNVSFQYQSDA--SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK---VKSGEIFYNNQAITDDNFEK 80 (269)
T ss_pred ceEEEEEEEEEcCCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHHH
Confidence 4799999999997521 128999999999999999999999999999999999999 9999999998653
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhccc
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
.+.++|++|++...+. ..++.+|+.+.....+.......+.+.++++.++. ..+.++.+||+||+||++||++++.
T Consensus 81 ~~~~i~~v~q~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 159 (269)
T PRK13648 81 LRKHIGIVFQNPDNQFV-GSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLAL 159 (269)
T ss_pred HHhheeEEEeChHHhcc-cccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 2358999999632222 36788888776544333222233456778888874 3466778999999999999999999
Q ss_pred CccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 226 ~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
+++++++|+|+..||. .+++.+.++.+ .+|++|||++++.. |++ |++++.|+++++..
T Consensus 160 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 160 NPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999 34455555432 24799999998765 444 88888888877644
No 165
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.2e-33 Score=255.25 Aligned_cols=196 Identities=13% Similarity=0.121 Sum_probs=155.4
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC----CCceeeeCCCCC----
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKASSFDSQVKP---- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p----~~G~i~~~~~~~---- 148 (313)
+|+++||++.| +.. +|+++||+|.+|++++|+|+||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~-~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~~~G~i~~~g~~i~~~~ 75 (254)
T PRK10418 4 QIELRNIALQA-AQP----LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP---AGVRQTAGRVLLDGKPVAPCA 75 (254)
T ss_pred EEEEeCeEEEe-ccc----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCcCCEEEECCeeccccc
Confidence 69999999999 445 9999999999999999999999999999999999998 8 999999998652
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC-----CCccCCCCCccCCCcchhhh
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~LSgGekqRv~la~ 221 (313)
.+.++|++|++...+.+.+++.+++.+.....+.. ...+.+.++++.++.. .+..+.+|||||+||++||+
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~lar 153 (254)
T PRK10418 76 LRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKP--ADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIAL 153 (254)
T ss_pred cccceEEEEecCCccccCccccHHHHHHHHHHHcCCC--hHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHH
Confidence 24599999996422333467777766543333322 2335677888888854 35677899999999999999
Q ss_pred hcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 222 LVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 222 al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
+++.++++|++|+|+..||.. +++.|.++.+ .+|++|||++.+.. |++ |+++..|++.++.
T Consensus 154 al~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 154 ALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999983 4455555533 24799999999865 444 8888888877764
No 166
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-33 Score=257.12 Aligned_cols=200 Identities=13% Similarity=0.092 Sum_probs=155.4
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCceeeeCCCCC-----
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~--~p~~G~i~~~~~~~----- 148 (313)
++|+++||++.|+++. +|+|+||+|.+|+++||+||||||||||+++|+|+++.. .|++|+|.++|.+.
T Consensus 19 ~~l~~~nl~~~~~~~~----il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 19 IALSTKDLHVYYGKKE----AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred eEEEEeeEEEEECCee----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 4799999999998766 999999999999999999999999999999999998500 04799999988542
Q ss_pred -----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC-CccHHHHHHHHHHhhc------CCCccCCCCCccCCCc
Q 021380 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDP 216 (313)
Q Consensus 149 -----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~LSgGekqR 216 (313)
.+.++|++|++.. +. .|+.+|+.+.....+... ......+.++++.++. ..++++.+|||||+||
T Consensus 95 ~~~~~~~~i~~v~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qr 171 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNP-FA--KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQR 171 (267)
T ss_pred ChHHHhcceEEEecCCcc-cc--ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHH
Confidence 2358999998543 32 599999987654333211 1223445667777664 2356778999999999
Q ss_pred chhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 217 VEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 217 v~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
++||++++.+++++++|+|+..||.. +.+.|.++.. .+|++|||++++.. |++ |++++.|++.++.
T Consensus 172 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 172 LCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999994 4444444432 25799999998765 544 8888899887764
No 167
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=5.7e-34 Score=252.39 Aligned_cols=190 Identities=19% Similarity=0.120 Sum_probs=153.1
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC----CCeEE
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----PDVAT 153 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~----~~~i~ 153 (313)
|+++|+++.|+++. +|+++||++.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+. .+.++
T Consensus 1 l~l~~v~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~~~~~~~~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGKQT----AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR---PTSGEIIFDGHPWTRKDLHKIG 73 (223)
T ss_pred CEEEeEEEEECCEE----EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEeccccccccEE
Confidence 46899999998766 9999999999999999999999999999999999999 9999999988642 24689
Q ss_pred EEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCccEEE
Q 021380 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 154 ~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a~~li 231 (313)
|++|++..++ .+|+.+|+.+.....+. ....+.++++.++.. .+..+..||+||+||++||++++.++++++
T Consensus 74 ~~~q~~~~~~--~~t~~~~~~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~lll 147 (223)
T TIGR03740 74 SLIESPPLYE--NLTARENLKVHTTLLGL----PDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLI 147 (223)
T ss_pred EEcCCCCccc--cCCHHHHHHHHHHHcCC----CHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999864333 47999999876544332 235677888888743 456777999999999999999999999999
Q ss_pred EcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhH
Q 021380 232 VDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 232 ~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e 280 (313)
+|+|+..||.. +++.|.++.+ .+|++|||++++.. |++ |+++..|++.+
T Consensus 148 lDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 148 LDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred ECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999994 4444444432 24799999998865 544 78877777643
No 168
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.9e-34 Score=250.70 Aligned_cols=178 Identities=14% Similarity=0.103 Sum_probs=140.3
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------CCe
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDV 151 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------~~~ 151 (313)
|+++|+++.|++.. . |+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.
T Consensus 1 i~~~~l~~~~~~~~----~--~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~---~~~G~i~~~g~~~~~~~~~~~~ 71 (211)
T cd03298 1 VRLDKIRFSYGEQP----M--HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET---PQSGRVLINGVDVTAAPPADRP 71 (211)
T ss_pred CEEEeEEEEeCCEe----c--ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCcCCHhHcc
Confidence 46899999998643 3 9999999999999999999999999999999999 9999999998642 235
Q ss_pred EEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCccE
Q 021380 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a~~ 229 (313)
++|++|++..++ .+|+.+|+.+.............+++.++++.++.. .+.++.+|||||+||++||++++.++++
T Consensus 72 i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~l 149 (211)
T cd03298 72 VSMLFQENNLFA--HLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPV 149 (211)
T ss_pred EEEEecccccCC--CCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 899999965333 479999987653211111122345677888888743 4667789999999999999999999999
Q ss_pred EEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 230 VIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 230 li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
+++|+|+..||.. +++.|.++.. .+|++|||++++..
T Consensus 150 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~ 194 (211)
T cd03298 150 LLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKR 194 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh
Confidence 9999999999994 4444444432 24799999998865
No 169
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.2e-33 Score=250.76 Aligned_cols=178 Identities=13% Similarity=0.109 Sum_probs=144.6
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
++|+++||++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 6 ~~i~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 78 (225)
T PRK10247 6 PLLQLQNVGYLAGDAK----ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDISTLKPEI 78 (225)
T ss_pred ceEEEeccEEeeCCce----eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEcCcCCHHH
Confidence 4799999999998766 9999999999999999999999999999999999999 9999999998542
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhcc
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~ 224 (313)
...++|++|++.. +. .|+.+|+.+....++. ......+.++++.++.. .+.++.+||+||+||++||++++
T Consensus 79 ~~~~i~~~~q~~~l-~~--~tv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 79 YRQQVSYCAQTPTL-FG--DTVYDNLIFPWQIRNQ--QPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred HHhccEEEeccccc-cc--ccHHHHHHhHHhhcCC--ChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 2358999999643 32 4999998875443322 12234567888888753 36778899999999999999999
Q ss_pred cCccEEEEcCcccccChhhH----HHHHHhhc----CeEEEEcChHHHH
Q 021380 225 LQHKVVIVDGNYLFLDGGVW----KDVSSMFD----EKWFIEVDLDTAM 265 (313)
Q Consensus 225 ~~a~~li~d~~~llLDE~~~----~~l~~l~~----~~i~vtHd~~~~~ 265 (313)
.+++++++|+|+..||.... +.+.++.. .+|++|||++++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~ 202 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN 202 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH
Confidence 99999999999999999444 34444432 2579999999874
No 170
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=7.3e-34 Score=280.46 Aligned_cols=196 Identities=17% Similarity=0.154 Sum_probs=158.3
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC----
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 149 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~---- 149 (313)
++++|+++||++.|+++. +|+|+||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 8 ~~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~ 80 (510)
T PRK15439 8 APPLLCARSISKQYSGVE----VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP---PDSGTLEIGGNPCARLTP 80 (510)
T ss_pred CCceEEEEeEEEEeCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCH
Confidence 345899999999998766 9999999999999999999999999999999999999 99999999885421
Q ss_pred -----CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhh
Q 021380 150 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 150 -----~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~a 222 (313)
..++|++|+...++ .+|+.+|+.+.... .....+++.++++.++. ..++++.+||||||||++||++
T Consensus 81 ~~~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 154 (510)
T PRK15439 81 AKAHQLGIYLVPQEPLLFP--NLSVKENILFGLPK----RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRG 154 (510)
T ss_pred HHHHhCCEEEEeccCccCC--CCcHHHHhhccccc----chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHH
Confidence 34899999964333 48999998764321 12234567788888884 3467788999999999999999
Q ss_pred cccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
++.++++|++|+|+..||.. +++.|.++.+ .+|++|||++++.. |++ |+++..|++.++.
T Consensus 155 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (510)
T PRK15439 155 LMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLS 228 (510)
T ss_pred HHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcC
Confidence 99999999999999999994 4444444433 24799999998876 544 8888888877654
No 171
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-33 Score=253.83 Aligned_cols=198 Identities=10% Similarity=0.086 Sum_probs=152.7
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----CceeeeCCCCC---
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSFDSQVKP--- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~-----~G~i~~~~~~~--- 148 (313)
+|+++||++.|++.. +|+|+||+|.+|++++|+||||||||||+|+|+|+++ |+ +|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~~~~~ 76 (252)
T PRK14272 4 LLSAQDVNIYYGDKQ----AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHD---LTPGARVTGRILLDGQDIYGP 76 (252)
T ss_pred EEEEeeeEEEECCEE----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceeEEECCEEcccC
Confidence 689999999998766 9999999999999999999999999999999999987 64 89999988542
Q ss_pred -------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCC-ccHHHHHHHHHHhhc------CCCccCCCCCccCC
Q 021380 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFDHGVG 214 (313)
Q Consensus 149 -------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~-~~~~~~~~~l~~l~~------~~~~~~~~LSgGek 214 (313)
...++|++|++..++ .+|+.+|+.+.....+.... ...+.+.++++.++. ..++++..|||||+
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~--~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 154 (252)
T PRK14272 77 RVDPVAMRRRVGMVFQKPNPFP--TMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQ 154 (252)
T ss_pred ccCHHHhhceeEEEeccCccCc--CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHH
Confidence 235899999965333 47999999875443322111 112334444554432 23567789999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~ 281 (313)
||++||++++.+++++++|+|+..||.. +.+.|.++.. .+|++|||++.+.. |++ |++++.|++.++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999994 3444444432 24799999998875 444 888888888776
Q ss_pred HH
Q 021380 282 AK 283 (313)
Q Consensus 282 ~~ 283 (313)
..
T Consensus 235 ~~ 236 (252)
T PRK14272 235 FT 236 (252)
T ss_pred Hh
Confidence 43
No 172
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-34 Score=259.67 Aligned_cols=201 Identities=15% Similarity=0.135 Sum_probs=157.5
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
+|+++||++.|++.. ...+|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~~ 79 (277)
T PRK13642 4 ILEVENLVFKYEKES-DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE---EFEGKVKIDGELLTAENVWNL 79 (277)
T ss_pred eEEEEEEEEEcCCCC-cCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECCEECCcCCHHHH
Confidence 799999999997421 1238999999999999999999999999999999999999 9999999998653
Q ss_pred CCeEEEEeccCC-CCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhccc
Q 021380 149 PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 ~~~i~~v~q~~~-~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
...++|++|++. .++ ..|+.+|+.+.....+.......+++.++++.++. ..++++..|||||+||++||++++.
T Consensus 80 ~~~i~~v~q~~~~~~~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~ 157 (277)
T PRK13642 80 RRKIGMVFQNPDNQFV--GATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIAL 157 (277)
T ss_pred hcceEEEEECHHHhhc--cCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 235899999952 223 36999999876543332222223456677777763 3456778999999999999999999
Q ss_pred CccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 226 QHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 226 ~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
+++++++|+|+..||.. +++.+.++.+ .+|++|||++++.. +++ |++++.|+++++..
T Consensus 158 ~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (277)
T PRK13642 158 RPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229 (277)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999994 4444444433 25799999999865 444 88888898887754
No 173
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=8.5e-34 Score=267.74 Aligned_cols=189 Identities=11% Similarity=0.090 Sum_probs=151.8
Q ss_pred cceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------------C
Q 021380 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------------P 149 (313)
Q Consensus 82 ~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------------~ 149 (313)
||+|.|++.. + ++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 4 ~l~~~~~~~~----~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~i~~~~~~~~~~~~~ 74 (354)
T TIGR02142 4 RFSKRLGDFS----L--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR---PDEGEIVLNGRTLFDSRKGIFLPPEK 74 (354)
T ss_pred EEEEEECCEE----E--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECccCccccccchhh
Confidence 7999998754 4 8999999999999999999999999999999999 9999999988532 2
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a 227 (313)
+.++|++|+...++ .+|+.+|+.+..... .......++.++++.++.. .++++.+||||||||++||++++.++
T Consensus 75 ~~i~~v~q~~~l~~--~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p 150 (354)
T TIGR02142 75 RRIGYVFQEARLFP--HLSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSP 150 (354)
T ss_pred CCeEEEecCCccCC--CCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 45899999964333 489999998765422 1122234577888888743 46778899999999999999999999
Q ss_pred cEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 228 KVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 228 ~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++|++|+|+..||.. +++.|.++.. .+|++|||++++.. +++ |+++..|++.++..
T Consensus 151 ~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 151 RLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 999999999999994 4555555443 25799999998865 544 88888898887754
No 174
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-33 Score=256.48 Aligned_cols=200 Identities=12% Similarity=0.096 Sum_probs=154.2
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCceeeeCCCCC-----
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~--~p~~G~i~~~~~~~----- 148 (313)
.+|+++||++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++.. .|++|+|.++|.+.
T Consensus 12 ~~l~i~nl~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 12 IIISLQNVTISYGTFE----AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred ceEEEEeEEEEECCEE----EEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 4799999999998766 999999999999999999999999999999999998610 13899999988542
Q ss_pred -----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc------CCCccCCCCCccCCCcc
Q 021380 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDPV 217 (313)
Q Consensus 149 -----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~~~~LSgGekqRv 217 (313)
.+.++|++|+... +. .|+.+|+.+.....+.. ....+.+.++++.++. ..+.++.+||||||||+
T Consensus 88 ~~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl 163 (269)
T PRK14259 88 DPVEVRRRIGMVFQQPNP-FP--KSIYENIAFGARINGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRL 163 (269)
T ss_pred CHHHHhhceEEEccCCcc-ch--hhHHHHHhhhhhhcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHH
Confidence 1358999999643 32 49999998765433322 1223445666777653 24667789999999999
Q ss_pred hhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH---------------hhhh
Q 021380 218 EDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL---------------KRHI 273 (313)
Q Consensus 218 ~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi---------------gr~v 273 (313)
+||++++.+++++++|+|+..||.. +++.|.++.. .+|++|||++++.. |++ |+++
T Consensus 164 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~ 243 (269)
T PRK14259 164 CIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLV 243 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEE
Confidence 9999999999999999999999984 4444444432 25799999998876 332 3467
Q ss_pred ccCChhHHHH
Q 021380 274 STGKPPDVAK 283 (313)
Q Consensus 274 ~~G~~~e~~~ 283 (313)
+.|++.++..
T Consensus 244 ~~~~~~~~~~ 253 (269)
T PRK14259 244 EFNETKKIFN 253 (269)
T ss_pred EeCCHHHHHh
Confidence 7888887754
No 175
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-33 Score=252.96 Aligned_cols=200 Identities=14% Similarity=0.099 Sum_probs=154.2
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCceeeeCCCCC-----
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~--~~p~~G~i~~~~~~~----- 148 (313)
++|+++|+++.|++.. +|+++||+|.+|++++|+|+||||||||+++|+|+++. ..|++|+|.++|.+.
T Consensus 3 ~~l~~~~l~~~~~~~~----~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~ 78 (251)
T PRK14251 3 NIISAKDVHLSYGNYE----ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM 78 (251)
T ss_pred ceEEEEeeEEEECCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccc
Confidence 3799999999998766 99999999999999999999999999999999999850 012799999988642
Q ss_pred -----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCC-ccHHHHHHHHHHhhcC------CCccCCCCCccCCCc
Q 021380 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP 216 (313)
Q Consensus 149 -----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~-~~~~~~~~~l~~l~~~------~~~~~~~LSgGekqR 216 (313)
.+.++|++|++.. +. .|+.+|+.+.....+.... .....+.++++.++.. .+.++.+|||||+||
T Consensus 79 ~~~~~~~~i~~~~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14251 79 DLVELRKEVGMVFQQPTP-FP--FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQR 155 (251)
T ss_pred hHHHhhccEEEEecCCcc-CC--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHH
Confidence 2358999999643 32 6999999876544332211 1223456677776642 356677999999999
Q ss_pred chhhhhcccCccEEEEcCcccccChhhH----HHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 217 VEDDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 217 v~la~al~~~a~~li~d~~~llLDE~~~----~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
++||++++.+++++++|+|+..||.... +.|.++.. .+|++|||++++.. |++ |+++..|++.++.
T Consensus 156 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 156 ICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999444 44444322 25799999998765 554 8888888877664
No 176
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.2e-33 Score=253.36 Aligned_cols=195 Identities=16% Similarity=0.038 Sum_probs=149.7
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCCceeeeCCCCC-------
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll--~~~~p~~G~i~~~~~~~------- 148 (313)
|+++||++.|++.. +|+|+||+|++|++++|+||||||||||+|+|+|++ + |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~g~~~~~~~~~~ 73 (243)
T TIGR01978 1 LKIKDLHVSVEDKE----ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYE---VTSGTILFKGQDLLELEPDE 73 (243)
T ss_pred CeEeeEEEEECCEE----EEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCcceEEECCEecCCCCHHH
Confidence 46899999998766 999999999999999999999999999999999994 6 9999999998642
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHHHhcC-C------CCCccHHHHHHHHHHhhcC---CCccCC-CCCccCCC
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-A------PWTFNPLLLLNCLKNLRNQ---GSVYAP-SFDHGVGD 215 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~-~------~~~~~~~~~~~~l~~l~~~---~~~~~~-~LSgGekq 215 (313)
...++|++|++..++ .+|+.+++.+...... . ......+.+.++++.++.. .++.+. .|||||||
T Consensus 74 ~~~~~i~~v~q~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~q 151 (243)
T TIGR01978 74 RARAGLFLAFQYPEEIP--GVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKK 151 (243)
T ss_pred hhccceEeeeccccccC--CcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHH
Confidence 123789999965433 4799999877543221 1 1111134567788888753 355665 59999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH----HHH----hhhhccCChhH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ----RVL----KRHISTGKPPD 280 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~----rvi----gr~v~~G~~~e 280 (313)
|++||++++.+++++++|+|+..||.. +++.|.++.+ .+|++|||++++.. +++ |+++..|++++
T Consensus 152 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (243)
T TIGR01978 152 RNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVEL 231 (243)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHH
Confidence 999999999999999999999999993 4445554432 25799999998754 333 77777777654
Q ss_pred H
Q 021380 281 V 281 (313)
Q Consensus 281 ~ 281 (313)
+
T Consensus 232 ~ 232 (243)
T TIGR01978 232 A 232 (243)
T ss_pred h
Confidence 3
No 177
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-34 Score=281.00 Aligned_cols=198 Identities=16% Similarity=0.140 Sum_probs=157.2
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
++|+++|+++.|+++. +|+|+||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 4 ~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~ 76 (510)
T PRK09700 4 PYISMAGIGKSFGPVH----ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE---PTKGTITINNINYNKLDHKL 76 (510)
T ss_pred ceEEEeeeEEEcCCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC---CCccEEEECCEECCCCCHHH
Confidence 5799999999998776 9999999999999999999999999999999999999 9999999988542
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHHHh----cCCC---CCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcc
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAP---WTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPV 217 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~----~~~~---~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv 217 (313)
.+.++|++|+...++ .+|+.+|+.+.... ++.. .....+++.++++.++. ..++++.+|||||||||
T Consensus 77 ~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 77 AAQLGIGIIYQELSVID--ELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQML 154 (510)
T ss_pred HHHCCeEEEeecccccC--CCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHH
Confidence 135899999964333 48999998764321 1211 11223456788888884 34677889999999999
Q ss_pred hhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 218 EDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 218 ~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
+||++++.++++|++|+|+..||.. +++.|.++.+ .+|++|||++++.. |++ |+++..|.++++.
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVS 233 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCC
Confidence 9999999999999999999999994 4444444433 25799999999876 554 8888888877653
No 178
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-33 Score=257.98 Aligned_cols=202 Identities=11% Similarity=0.113 Sum_probs=155.8
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC---CCceeeeCCCCC--
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKASSFDSQVKP-- 148 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p---~~G~i~~~~~~~-- 148 (313)
+.++|+++||++.|++.. +|+|+||+|.+|++++|+||||||||||+++|+|+++.. | ++|+|.++|.+.
T Consensus 36 ~~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~-p~~~~~G~I~~~g~~i~~ 110 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEFE----AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLI-PSCHTTGALMFDGEDIYG 110 (286)
T ss_pred CceEEEEeeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccC-CCCCCceEEEECCEEhhh
Confidence 345799999999998766 999999999999999999999999999999999985200 3 899999988532
Q ss_pred --------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC-CccHHHHHHHHHHhhc------CCCccCCCCCccC
Q 021380 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGV 213 (313)
Q Consensus 149 --------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~LSgGe 213 (313)
.+.++|++|++.. +. .|+.+|+.+.....+... ....+.+.++++.++. ..+.++..|||||
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq 187 (286)
T PRK14275 111 KFTDEVLLRKKIGMVFQKPNP-FP--KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQ 187 (286)
T ss_pred cccchHHhhhcEEEECCCCCC-Cc--cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHH
Confidence 2359999999643 32 499999988654433221 1123345566666653 2356778999999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhH
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e 280 (313)
+||++||++++.++++|++|+|+..||.. +++.|.++.. .+|++|||++++.. |++ |+++..|++.+
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999984 4444444433 25799999999865 544 88888888777
Q ss_pred HHH
Q 021380 281 VAK 283 (313)
Q Consensus 281 ~~~ 283 (313)
+..
T Consensus 268 ~~~ 270 (286)
T PRK14275 268 LFT 270 (286)
T ss_pred HHh
Confidence 643
No 179
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=1.8e-33 Score=253.60 Aligned_cols=190 Identities=17% Similarity=0.136 Sum_probs=147.6
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEE
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v 155 (313)
++|+++||++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++. ..++|+
T Consensus 3 ~~l~~~~l~~~~~~~~----vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~~~---~~i~~v 72 (251)
T PRK09544 3 SLVSLENVSVSFGQRR----VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA---PDEGVIKRNGK---LRIGYV 72 (251)
T ss_pred cEEEEeceEEEECCce----EEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCc---cCEEEe
Confidence 4799999999998766 9999999999999999999999999999999999999 99999999873 349999
Q ss_pred eccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCccEEEEc
Q 021380 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (313)
Q Consensus 156 ~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a~~li~d 233 (313)
+|+......-..++.+++.+ . .....+.+.++++.++.. .++++..|||||+||++||++++.+++++++|
T Consensus 73 ~q~~~~~~~l~~~~~~~~~~----~---~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD 145 (251)
T PRK09544 73 PQKLYLDTTLPLTVNRFLRL----R---PGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLD 145 (251)
T ss_pred ccccccccccChhHHHHHhc----c---ccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99954322111244443321 1 112234567788888743 45678899999999999999999999999999
Q ss_pred CcccccChhh----HHHHHHhhc----CeEEEEcChHHHHH---HHH---hhhhccCChhHHH
Q 021380 234 GNYLFLDGGV----WKDVSSMFD----EKWFIEVDLDTAMQ---RVL---KRHISTGKPPDVA 282 (313)
Q Consensus 234 ~~~llLDE~~----~~~l~~l~~----~~i~vtHd~~~~~~---rvi---gr~v~~G~~~e~~ 282 (313)
+|+..||... ++.|.++.. .+|++|||++++.. |++ ++++..|++.++.
T Consensus 146 EPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~~i~~~g~~~~~~ 208 (251)
T PRK09544 146 EPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNHHICCSGTPEVVS 208 (251)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECCceEeeCCHHHHh
Confidence 9999999843 344444332 24799999999866 444 6667788877664
No 180
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-33 Score=257.81 Aligned_cols=199 Identities=11% Similarity=0.033 Sum_probs=151.3
Q ss_pred eEEEccceeEcc-ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----CC
Q 021380 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PD 150 (313)
Q Consensus 77 ~l~v~~ls~~y~-~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-----~~ 150 (313)
+|+++||++.|+ ++. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+. ..
T Consensus 6 ~l~~~~l~~~~~~~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (272)
T PRK15056 6 GIVVNDVTVTWRNGHT----ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR---LASGKISILGQPTRQALQKN 78 (272)
T ss_pred eEEEEeEEEEecCCcE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEhHHhhccc
Confidence 699999999996 455 9999999999999999999999999999999999999 9999999998642 23
Q ss_pred eEEEEeccCCCCCcccCCcccCHHHHHHh----cCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcc
Q 021380 151 VATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 151 ~i~~v~q~~~~~~~~~ltv~e~l~~~~~~----~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~ 224 (313)
.++|++|++........++.+++.+.... ...+.......+.++++.++. ..++++.+|||||+||++||++++
T Consensus 79 ~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~ 158 (272)
T PRK15056 79 LVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIA 158 (272)
T ss_pred eEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 58999998532221123566666432110 011112233456677788774 346778899999999999999999
Q ss_pred cCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH---hhhhccCChhHHH
Q 021380 225 LQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL---KRHISTGKPPDVA 282 (313)
Q Consensus 225 ~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi---gr~v~~G~~~e~~ 282 (313)
.+++++++|+|+..||.. +.+.|.++.+ .+|++|||++++.. +++ |+++..|++.++.
T Consensus 159 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~~G~i~~~g~~~~~~ 229 (272)
T PRK15056 159 QQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLASGPTETTF 229 (272)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEECCEEEeecCHHhcc
Confidence 999999999999999994 4444444432 25799999998866 444 8888888877753
No 181
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.5e-33 Score=248.08 Aligned_cols=188 Identities=14% Similarity=0.094 Sum_probs=146.1
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------CCe
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDV 151 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------~~~ 151 (313)
++++||++.|+. ++.++||++.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.
T Consensus 1 ~~~~~l~~~~~~------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 71 (213)
T TIGR01277 1 LALDKVRYEYEH------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE---PASGSIKVNDQSHTGLAPYQRP 71 (213)
T ss_pred CeEEeeeEEeCC------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEcccCChhccc
Confidence 468999999973 5679999999999999999999999999999999999 9999999998642 245
Q ss_pred EEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccE
Q 021380 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~ 229 (313)
++|++|++..++ .+|+.+|+.+...............+.++++.++. ..++.+..||+||+||++||++++.++++
T Consensus 72 i~~v~q~~~~~~--~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 149 (213)
T TIGR01277 72 VSMLFQENNLFA--HLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPI 149 (213)
T ss_pred eEEEeccCccCC--CCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 899999965333 47999998765332111111234456778888874 34667789999999999999999999999
Q ss_pred EEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccC
Q 021380 230 VIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTG 276 (313)
Q Consensus 230 li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G 276 (313)
+++|+|+..||.. +.+.|.++.+ .+|++|||.+++.. +++ |++++.|
T Consensus 150 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~ 211 (213)
T TIGR01277 150 LLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211 (213)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEec
Confidence 9999999999994 4445555432 24799999998764 443 5555554
No 182
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.8e-33 Score=245.09 Aligned_cols=180 Identities=14% Similarity=0.030 Sum_probs=145.3
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----C
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----P 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-----~ 149 (313)
.++|+++|+++.|+++. +|+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|... .
T Consensus 9 ~~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~i~~~~~~ 81 (214)
T PRK13543 9 PPLLAAHALAFSRNEEP----VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH---VESGQIQIDGKTATRGDRS 81 (214)
T ss_pred cceEEEeeEEEecCCce----eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCeeEEECCEEccchhhh
Confidence 35799999999998766 9999999999999999999999999999999999999 9999999998643 2
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a 227 (313)
+.++|++|++..+ +.+|+.+|+.+....++. ...+.+.++++.++. ..+.++..||+||+||++|+++++.++
T Consensus 82 ~~i~~~~q~~~~~--~~~t~~e~l~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (214)
T PRK13543 82 RFMAYLGHLPGLK--ADLSTLENLHFLCGLHGR---RAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPA 156 (214)
T ss_pred hceEEeecCcccc--cCCcHHHHHHHHHHhcCC---cHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCC
Confidence 3489999985432 247999998876543331 133456677787773 346778899999999999999999999
Q ss_pred cEEEEcCcccccChhhHHHH----HHhhc---CeEEEEcChHHHHH
Q 021380 228 KVVIVDGNYLFLDGGVWKDV----SSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 228 ~~li~d~~~llLDE~~~~~l----~~l~~---~~i~vtHd~~~~~~ 266 (313)
+++++|+|+..||....+.+ .++.+ .+|++|||++++..
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 202 (214)
T PRK13543 157 PLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPP 202 (214)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhh
Confidence 99999999999999444433 33322 24799999998765
No 183
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-33 Score=251.07 Aligned_cols=197 Identities=14% Similarity=0.154 Sum_probs=156.5
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------CCe
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDV 151 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------~~~ 151 (313)
|+++|+++.|+++. +|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.++|.+. .+.
T Consensus 1 l~~~~l~~~~~~~~----il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (232)
T cd03300 1 IELENVSKFYGGFV----ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET---PTSGEILLDGKDITNLPPHKRP 73 (232)
T ss_pred CEEEeEEEEeCCee----eeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhcc
Confidence 46899999998776 9999999999999999999999999999999999999 9999999988642 246
Q ss_pred EEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCccE
Q 021380 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a~~ 229 (313)
++|++|+...+. .+|+.+|+.+....++.........+..+++.++.. .+..+..||+||+||++||++++.++++
T Consensus 74 i~~~~q~~~~~~--~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (232)
T cd03300 74 VNTVFQNYALFP--HLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKV 151 (232)
T ss_pred eEEEecccccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 899999965433 479999988765544322222344567778887743 4667789999999999999999999999
Q ss_pred EEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 230 VIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 230 li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
+++|+|+..||.. +++.+.++.. .+|++|||++++.. |++ |++++.|...++..
T Consensus 152 lllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~ 220 (232)
T cd03300 152 LLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220 (232)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHh
Confidence 9999999999994 4444444432 34799999998765 444 78888887666543
No 184
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-33 Score=257.88 Aligned_cols=197 Identities=17% Similarity=0.129 Sum_probs=154.1
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC--------CceeeeCCCCC
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--------KASSFDSQVKP 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~--------~G~i~~~~~~~ 148 (313)
||+++|+++.|+++. +|+++||+|.+|++++|+||||||||||+++|+|+++ |+ +|+|.++|.+.
T Consensus 1 ml~~~nl~~~~~~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~---p~~~~~~~~~~G~i~~~g~~~ 73 (272)
T PRK13547 1 MLTADHLHVARRHRA----ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT---GGGAPRGARVTGDVTLNGEPL 73 (272)
T ss_pred CeEEEEEEEEECCEe----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CcccccccCCceEEEECCEEc
Confidence 489999999998776 9999999999999999999999999999999999998 87 99999998643
Q ss_pred --------CCeEEEEeccCCCCCcccCCcccCHHHHHHhc----CCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCC
Q 021380 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVG 214 (313)
Q Consensus 149 --------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGek 214 (313)
.+.++|++|+...++ .+|+.+|+.+..... +.......+.+.++++.++. ..++++.+|||||+
T Consensus 74 ~~~~~~~~~~~~~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 151 (272)
T PRK13547 74 AAIDAPRLARLRAVLPQAAQPAF--AFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGEL 151 (272)
T ss_pred ccCCHHHHHhhcEEecccCCCCC--CCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHH
Confidence 124799999864333 379999987643211 11111233456778888774 34677889999999
Q ss_pred Ccchhhhhcc---------cCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----h
Q 021380 215 DPVEDDILVG---------LQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----K 270 (313)
Q Consensus 215 qRv~la~al~---------~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----g 270 (313)
||++||++++ .++++|++|+|+..||.. +++.|.++.. .+|++|||++.+.. +++ |
T Consensus 152 qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G 231 (272)
T PRK13547 152 ARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADG 231 (272)
T ss_pred HHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999 599999999999999993 4444444432 24799999998865 444 8
Q ss_pred hhhccCChhHHH
Q 021380 271 RHISTGKPPDVA 282 (313)
Q Consensus 271 r~v~~G~~~e~~ 282 (313)
++++.|++.++.
T Consensus 232 ~i~~~g~~~~~~ 243 (272)
T PRK13547 232 AIVAHGAPADVL 243 (272)
T ss_pred eEEEecCHHHHc
Confidence 888888877764
No 185
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=4.7e-33 Score=246.61 Aligned_cols=185 Identities=18% Similarity=0.116 Sum_probs=142.3
Q ss_pred eEEEccceeEccccc---cccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeC--CC--CC-
Q 021380 77 VVEARCMDEVYDALA---QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS--QV--KP- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~---~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~--~~--~~- 148 (313)
||+++||++.|++.. ....+|+|+||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.++ |. +.
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~~~g~~~~~~ 77 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL---PDSGRILVRHEGAWVDLA 77 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEEecCCCccchh
Confidence 488999999996310 01238999999999999999999999999999999999999 999999997 32 21
Q ss_pred -----------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCC
Q 021380 149 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVG 214 (313)
Q Consensus 149 -----------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGek 214 (313)
...++|++|+...++ .+|+.+|+.+.....+.......+.+.++++.++.. .+.++.+|||||+
T Consensus 78 ~~~~~~~~~~~~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~ 155 (224)
T TIGR02324 78 QASPREVLEVRRKTIGYVSQFLRVIP--RVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQ 155 (224)
T ss_pred hcCHHHHHHHHhcceEEEecccccCC--CccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHH
Confidence 135899999964333 479999988754433322222344667788888743 2567789999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc---CeEEEEcChHHHHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
||++||++++.+++++++|+|+..||... .+.|.++.+ .+|++|||.+.+..
T Consensus 156 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~ 214 (224)
T TIGR02324 156 QRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVREL 214 (224)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 99999999999999999999999999943 444444332 24799999887753
No 186
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.4e-33 Score=245.82 Aligned_cols=177 Identities=15% Similarity=0.051 Sum_probs=143.3
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----CCe
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PDV 151 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-----~~~ 151 (313)
||+++||++.|++.. +|+++||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+. .+.
T Consensus 2 ~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 74 (207)
T PRK13539 2 MLEGEDLACVRGGRV----LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP---PAAGTIKLDGGDIDDPDVAEA 74 (207)
T ss_pred EEEEEeEEEEECCeE----EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEeCcchhhHhh
Confidence 699999999998766 9999999999999999999999999999999999999 9999999998652 235
Q ss_pred EEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCccE
Q 021380 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a~~ 229 (313)
++|++|+...++ .+|+.+|+.+.....+. ....+.++++.++.. .+.++.+|||||+||++||++++.++++
T Consensus 75 ~~~~~~~~~~~~--~~tv~~~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 148 (207)
T PRK13539 75 CHYLGHRNAMKP--ALTVAENLEFWAAFLGG----EELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPI 148 (207)
T ss_pred cEEecCCCcCCC--CCcHHHHHHHHHHhcCC----cHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 788987754322 47999998775443321 234567888888743 3567779999999999999999999999
Q ss_pred EEEcCcccccChh----hHHHHHHhhcC---eEEEEcChHHHHH
Q 021380 230 VIVDGNYLFLDGG----VWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 230 li~d~~~llLDE~----~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
+++|+|+..||.. +++.|.++.+. +|++|||.+++..
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 149 WILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG 192 (207)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc
Confidence 9999999999984 44444443322 4799999988765
No 187
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.1e-33 Score=278.47 Aligned_cols=205 Identities=14% Similarity=0.147 Sum_probs=157.6
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCceeeeCCCCC-
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~i~~~~~~~- 148 (313)
.+||+++||++.|++......+|++|||+|.+||++||+||||||||||+|+|+|+++ | ++|+|.++|.+.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~i~ 79 (529)
T PRK15134 3 QPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLP---SPPVVYPSGDIRFHGESLL 79 (529)
T ss_pred CceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC---CCcCCccceEEEECCEecc
Confidence 3579999999999631001129999999999999999999999999999999999997 6 799999988542
Q ss_pred -----------CCeEEEEeccCCCCCcccCCcccCHHHHHHh-cCCCCCccHHHHHHHHHHhhcC-----CCccCCCCCc
Q 021380 149 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDH 211 (313)
Q Consensus 149 -----------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~LSg 211 (313)
.+.++|++|++.....+.+++.+++.+.... .+.+.....+++.++++.++.. .++++.+|||
T Consensus 80 ~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSg 159 (529)
T PRK15134 80 HASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSG 159 (529)
T ss_pred cCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCH
Confidence 1358999999632122346888887654332 2333223345678888888853 3667889999
Q ss_pred cCCCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccC
Q 021380 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTG 276 (313)
Q Consensus 212 GekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G 276 (313)
||||||+||++++.++++|++|||+..||+ .+++.|.++.+ .+|+||||++.+.. |++ |+++..|
T Consensus 160 Ge~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g 239 (529)
T PRK15134 160 GERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQN 239 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999 34455555432 25799999998875 555 8888888
Q ss_pred ChhHHH
Q 021380 277 KPPDVA 282 (313)
Q Consensus 277 ~~~e~~ 282 (313)
.+.++.
T Consensus 240 ~~~~~~ 245 (529)
T PRK15134 240 RAATLF 245 (529)
T ss_pred CHHHHh
Confidence 877664
No 188
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-33 Score=251.31 Aligned_cols=198 Identities=11% Similarity=0.100 Sum_probs=153.9
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----CceeeeCCCCC--
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSFDSQVKP-- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~-----~G~i~~~~~~~-- 148 (313)
++|+++||++.|+++. +|+++||+|.+|+++||+||||||||||+++|+|+++ |+ +|+|.++|.+.
T Consensus 3 ~~l~~~~l~~~~~~~~----il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~~~ 75 (251)
T PRK14249 3 PKIKIRGVNFFYHKHQ----VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND---IVSGARLEGAVLLDNENIYS 75 (251)
T ss_pred ceEEEEEEEEEECCee----EecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---ccccCCcccEEEECCEEccc
Confidence 4799999999998766 9999999999999999999999999999999999998 76 69999988542
Q ss_pred --------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCC-ccHHHHHHHHHHhhc------CCCccCCCCCccC
Q 021380 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFDHGV 213 (313)
Q Consensus 149 --------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~-~~~~~~~~~l~~l~~------~~~~~~~~LSgGe 213 (313)
.+.++|++|++..+ + .|+.+|+.+....++.... ...+.+.++++.++. ..+..+..|||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq 152 (251)
T PRK14249 76 PNLDVVNLRKRVGMVFQQPNPF-P--KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQ 152 (251)
T ss_pred cccChHHhhceEEEEecCCccC-c--CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHH
Confidence 24599999996533 2 4899999876544332211 122345555665552 2456778999999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhH
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e 280 (313)
+||++||++++.+++++++|+|+..||.. +.+.|.++.. .+|++|||++++.. +++ |+++..|++.+
T Consensus 153 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 153 QQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 99999999999999999999999999984 3444444432 25799999999876 444 78888888777
Q ss_pred HHH
Q 021380 281 VAK 283 (313)
Q Consensus 281 ~~~ 283 (313)
+..
T Consensus 233 ~~~ 235 (251)
T PRK14249 233 IFS 235 (251)
T ss_pred HHh
Confidence 643
No 189
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-33 Score=256.18 Aligned_cols=198 Identities=14% Similarity=0.099 Sum_probs=154.0
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCceeeeCCCCC--
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP-- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~i~~~~~~~-- 148 (313)
++|+++||++.|+++. +|+|+||+|++|++++|+|+||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 20 ~~l~i~nl~~~~~~~~----il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---p~~~~~~~G~i~~~g~~i~~ 92 (276)
T PRK14271 20 PAMAAVNLTLGFAGKT----VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMND---KVSGYRYSGDVLLGGRSIFN 92 (276)
T ss_pred cEEEEeeEEEEECCEE----EeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---cCCCCCCceEEEECCEEccc
Confidence 4799999999998776 9999999999999999999999999999999999997 6 699999988542
Q ss_pred -------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCC-CCCccHHHHHHHHHHhhcC------CCccCCCCCccCC
Q 021380 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (313)
Q Consensus 149 -------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~l~~~------~~~~~~~LSgGek 214 (313)
...++|++|++.. ++ +|+.+|+.+....... ........+.++++.++.. .+..+..|||||+
T Consensus 93 ~~~~~~~~~~i~~v~q~~~l-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~ 169 (276)
T PRK14271 93 YRDVLEFRRRVGMLFQRPNP-FP--MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQ 169 (276)
T ss_pred cchhHHHhhheEEeccCCcc-CC--ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHH
Confidence 2358999999643 32 6999998876432221 1111223345667777642 2456779999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~ 281 (313)
||++||++++.+++++++|+|+..||... .+.|.++.+ .+|++|||++++.. |++ |+++..|++.++
T Consensus 170 qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~ 249 (276)
T PRK14271 170 QLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL 249 (276)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999943 344444332 35799999998776 554 888888888777
Q ss_pred HH
Q 021380 282 AK 283 (313)
Q Consensus 282 ~~ 283 (313)
..
T Consensus 250 ~~ 251 (276)
T PRK14271 250 FS 251 (276)
T ss_pred Hh
Confidence 54
No 190
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-33 Score=251.62 Aligned_cols=200 Identities=14% Similarity=0.087 Sum_probs=154.2
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC---CCceeeeCCCCC---
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKASSFDSQVKP--- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p---~~G~i~~~~~~~--- 148 (313)
.++|+++|+++.|+++. +|+|+||+|.+|++++|+||||||||||+++|+|+++.. | ++|+|.++|.+.
T Consensus 4 ~~~i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~~~~~~G~i~~~g~~~~~~ 78 (253)
T PRK14261 4 EIILSTKNLNLWYGEKH----ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLI-PGCRITGDILYNGENIMDS 78 (253)
T ss_pred cceEEEeeeEEEECCee----eeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCC-CCCCcceEEEECCEEcccc
Confidence 45799999999998776 999999999999999999999999999999999987500 2 489999988542
Q ss_pred -------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC-CccHHHHHHHHHHhhc------CCCccCCCCCccCC
Q 021380 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGVG 214 (313)
Q Consensus 149 -------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~LSgGek 214 (313)
.+.++|++|++.. +. .|+.+|+.+....++... ......+.++++.++. ..+..+..||+||+
T Consensus 79 ~~~~~~~~~~i~~~~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 79 GADVVALRRKIGMVFQRPNP-FP--KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQ 155 (253)
T ss_pred ccchhhhhceEEEEecCCcc-Cc--ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHH
Confidence 2358999999643 32 499999987655443221 1123345566666653 23567779999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChhhH----HHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~~~----~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~ 281 (313)
||++||++++.+++++++|+|+..||.... +.|.++.+ .+|++|||++++.. +++ |+++..|++.++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 999999999999999999999999999443 44444332 35799999998865 444 888888888776
Q ss_pred H
Q 021380 282 A 282 (313)
Q Consensus 282 ~ 282 (313)
.
T Consensus 236 ~ 236 (253)
T PRK14261 236 F 236 (253)
T ss_pred H
Confidence 4
No 191
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-33 Score=251.34 Aligned_cols=199 Identities=13% Similarity=0.110 Sum_probs=154.7
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCceeeeCCCCC-
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~i~~~~~~~- 148 (313)
+.+|+++||++.|++.. +|+|+||+|.+|++++|+|+||||||||+|+|+|+++ | ++|+|.++|.+.
T Consensus 5 ~~~l~~~~l~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~---~~~~~~~~G~i~~~g~~i~ 77 (259)
T PRK14260 5 IPAIKVKDLSFYYNTSK----AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISE---LEGPVKVEGVVDFFGQNIY 77 (259)
T ss_pred cceEEEEEEEEEECCeE----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcC---cccCCccceEEEECCEecc
Confidence 45799999999998766 9999999999999999999999999999999999987 5 489999988542
Q ss_pred ---------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCC-CCCccHHHHHHHHHHhhc------CCCccCCCCCcc
Q 021380 149 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRN------QGSVYAPSFDHG 212 (313)
Q Consensus 149 ---------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~l~~------~~~~~~~~LSgG 212 (313)
...++|++|++.. +. +|+.+|+.+.....+. +.....+.+.++++.++. ..+.++.+||+|
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G 154 (259)
T PRK14260 78 DPRININRLRRQIGMVFQRPNP-FP--MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGG 154 (259)
T ss_pred ccccchHhhhhheEEEeccccc-CC--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHH
Confidence 1358999999643 32 7999999876443321 211223445667776653 245677799999
Q ss_pred CCCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HH--H-------hhhhc
Q 021380 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RV--L-------KRHIS 274 (313)
Q Consensus 213 ekqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rv--i-------gr~v~ 274 (313)
|+||++||++++.+++++++|+|+..||.. +++.|.++.. .+|++|||++++.. |+ + |++++
T Consensus 155 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 234 (259)
T PRK14260 155 QQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVE 234 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEE
Confidence 999999999999999999999999999984 4444444432 25799999999876 32 2 67777
Q ss_pred cCChhHHHH
Q 021380 275 TGKPPDVAK 283 (313)
Q Consensus 275 ~G~~~e~~~ 283 (313)
.|++.++..
T Consensus 235 ~~~~~~~~~ 243 (259)
T PRK14260 235 FGVTTQIFS 243 (259)
T ss_pred eCCHHHHhc
Confidence 888877643
No 192
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=3.5e-33 Score=276.28 Aligned_cols=200 Identities=14% Similarity=0.106 Sum_probs=157.2
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCCceeeeC-----------
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDS----------- 144 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll--~~~~p~~G~i~~~----------- 144 (313)
|+++|+++.|+++. +|+|+||+|.+|+++||+||||||||||+|+|+|++ + |++|+|.++
T Consensus 1 l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~---p~~G~i~~~~~~~~~~~~~~ 73 (520)
T TIGR03269 1 IEVKNLTKKFDGKE----VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYE---PTSGRIIYHVALCEKCGYVE 73 (520)
T ss_pred CEEEEEEEEECCeE----eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCC---CCceEEEEeccccccccccc
Confidence 57899999998766 999999999999999999999999999999999996 7 999999886
Q ss_pred ------------CCC------------------CCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHH
Q 021380 145 ------------QVK------------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC 194 (313)
Q Consensus 145 ------------~~~------------------~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 194 (313)
|.+ ..+.++|++|+...++. .+|+.+|+.+.....+.+.....+++.++
T Consensus 74 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~ 152 (520)
T TIGR03269 74 RPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYG-DDTVLDNVLEALEEIGYEGKEAVGRAVDL 152 (520)
T ss_pred cccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCC-CCCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 210 02348999997323232 47999999886554443332334567788
Q ss_pred HHHhhcC--CCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHH
Q 021380 195 LKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTA 264 (313)
Q Consensus 195 l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~ 264 (313)
++.++.. .++++.+|||||||||+||++++.++++|++|+|+..||.. +++.|.++.. .+|+||||++.+
T Consensus 153 l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~ 232 (520)
T TIGR03269 153 IEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVI 232 (520)
T ss_pred HHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH
Confidence 8888843 36678899999999999999999999999999999999994 3444455532 257999999988
Q ss_pred HH---HHH----hhhhccCChhHHHHHH
Q 021380 265 MQ---RVL----KRHISTGKPPDVAKWR 285 (313)
Q Consensus 265 ~~---rvi----gr~v~~G~~~e~~~~~ 285 (313)
.. |++ |+++..|.+.++...+
T Consensus 233 ~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 233 EDLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred HHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 65 544 7888888887776543
No 193
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.9e-33 Score=251.43 Aligned_cols=196 Identities=17% Similarity=0.210 Sum_probs=155.6
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------CCe
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDV 151 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------~~~ 151 (313)
|+++|+++.|+++. +|+++||++.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+. .+.
T Consensus 1 i~i~~l~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~i~g~~~~~~~~~~~~ 73 (237)
T TIGR00968 1 IEIANISKRFGSFQ----ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ---PDSGRIRLNGQDATRVHARDRK 73 (237)
T ss_pred CEEEEEEEEECCee----eeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhcC
Confidence 46899999998776 9999999999999999999999999999999999999 9999999988552 245
Q ss_pred EEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccE
Q 021380 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~ 229 (313)
++|++|++..++ .+|+.+|+.+....++.......+.+.++++.++. ..++.+..||+||+||++|+++++.++++
T Consensus 74 i~~~~q~~~~~~--~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (237)
T TIGR00968 74 IGFVFQHYALFK--HLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQV 151 (237)
T ss_pred EEEEecChhhcc--CCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 899999864332 47999999876544332222233456777888774 34667789999999999999999999999
Q ss_pred EEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 230 VIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 230 li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
+++|+|+..||.. +++.+.++.. .+|++||+++++.. |++ |++++.|+.+++.
T Consensus 152 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 9999999999994 4444444432 25799999998765 544 8888888877664
No 194
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-33 Score=252.55 Aligned_cols=200 Identities=12% Similarity=0.077 Sum_probs=151.7
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCceeeeCCCCC-----
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~--~p~~G~i~~~~~~~----- 148 (313)
++|+++||++.|++.. +|+|+||+|++|++++|+|+||||||||+++|+|+++.. +|++|+|.++|.+.
T Consensus 9 ~~l~i~~v~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 84 (264)
T PRK14243 9 TVLRTENLNVYYGSFL----AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV 84 (264)
T ss_pred eEEEEeeeEEEECCEE----EeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccccc
Confidence 4799999999998766 999999999999999999999999999999999998510 02799999988542
Q ss_pred -----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc------CCCccCCCCCccCCCcc
Q 021380 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDPV 217 (313)
Q Consensus 149 -----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~~~~LSgGekqRv 217 (313)
.+.++|++|+... +. .|+.+|+.+.....+.. ....+.+.++++.++. ..+..+.+|||||+||+
T Consensus 85 ~~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 85 DPVEVRRRIGMVFQKPNP-FP--KSIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRL 160 (264)
T ss_pred ChHHHhhhEEEEccCCcc-cc--ccHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHH
Confidence 2358999998643 32 48999988764432221 1122344555555543 24567779999999999
Q ss_pred hhhhhcccCccEEEEcCcccccChhhH----HHHHHhhc--CeEEEEcChHHHHH---HHH-------------hhhhcc
Q 021380 218 EDDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD--EKWFIEVDLDTAMQ---RVL-------------KRHIST 275 (313)
Q Consensus 218 ~la~al~~~a~~li~d~~~llLDE~~~----~~l~~l~~--~~i~vtHd~~~~~~---rvi-------------gr~v~~ 275 (313)
+||++++.++++|++|+|+..||.... +.|.++.+ .+|++|||++++.. |++ |++++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 999999999999999999999999444 44443332 35799999998876 332 677778
Q ss_pred CChhHHHH
Q 021380 276 GKPPDVAK 283 (313)
Q Consensus 276 G~~~e~~~ 283 (313)
|.+.++..
T Consensus 241 ~~~~~~~~ 248 (264)
T PRK14243 241 DRTEKIFN 248 (264)
T ss_pred CCHHHHHh
Confidence 88877753
No 195
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5.6e-33 Score=242.16 Aligned_cols=186 Identities=15% Similarity=0.131 Sum_probs=152.6
Q ss_pred ccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccC
Q 021380 93 RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMED 172 (313)
Q Consensus 93 ~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~ 172 (313)
...+|+||||++++||.+||+|+||||||||+|+|+|.++ |++|+|.++|. +..+..-+.- +++++|.+||
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~---Pt~G~v~v~G~-----v~~li~lg~G-f~pelTGreN 109 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK---PTSGKVKVTGK-----VAPLIELGAG-FDPELTGREN 109 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC---CCCceEEEcce-----EehhhhcccC-CCcccchHHH
Confidence 3559999999999999999999999999999999999999 99999999875 3322222111 3346999999
Q ss_pred HHHHHHhcCCCCCccHHHHHHHHHH--hhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhh----HHH
Q 021380 173 PKEAHARRGAPWTFNPLLLLNCLKN--LRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV----WKD 246 (313)
Q Consensus 173 l~~~~~~~~~~~~~~~~~~~~~l~~--l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~----~~~ 246 (313)
+.+.....|...++..+++.++.++ ++...+.++.+||-||+.|++++.+...++++|++|+-+..-|+.+ .+.
T Consensus 110 i~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~r 189 (249)
T COG1134 110 IYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLER 189 (249)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHH
Confidence 9999888888777777777777665 4467788999999999999999999999999999999999999943 334
Q ss_pred HHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHHHHHHH
Q 021380 247 VSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWRIE 287 (313)
Q Consensus 247 l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~~~~ 287 (313)
+.++.. .+|+||||++.+.+ |++ |++...|++++++..|..
T Consensus 190 l~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~ 240 (249)
T COG1134 190 LNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEE 240 (249)
T ss_pred HHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHH
Confidence 444422 25799999999988 555 999999999999988654
No 196
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-33 Score=249.49 Aligned_cols=200 Identities=15% Similarity=0.104 Sum_probs=153.0
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC---CCceeeeCCCCC----
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKASSFDSQVKP---- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p---~~G~i~~~~~~~---- 148 (313)
+||+++||++.|+++. +|+++||+|.+|+++||+|+||||||||+++|+|+++.. | ++|+|.++|.+.
T Consensus 4 ~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14255 4 KIITSSDVHLFYGKFE----ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLI-PGVTITGNVSLRGQNIYAPN 78 (252)
T ss_pred ceEEEEeEEEEECCee----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccC-CCCCcccEEEEcCEEccccc
Confidence 4799999999998766 999999999999999999999999999999999986300 3 589999988642
Q ss_pred ------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCC-ccHHHHHHHHHHhhc------CCCccCCCCCccCCC
Q 021380 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~-~~~~~~~~~l~~l~~------~~~~~~~~LSgGekq 215 (313)
.+.++|++|++.. +. .|+.+|+.+.....+.... ...+.+.+.++.++. ..+..+.+||+||+|
T Consensus 79 ~~~~~~~~~i~~~~q~~~~-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 79 EDVVQLRKQVGMVFQQPNP-FP--FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQ 155 (252)
T ss_pred ccHHHhcCeEEEEECCCcc-CC--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHH
Confidence 2359999998643 32 5999999876544332211 112344556666653 235677799999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
|++||++++.+++++++|+|+..||.. +.+.|.++.+ .+|++|||++++.. |++ |+++..|.+.++.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999994 3344444432 35799999998865 544 8888888877764
Q ss_pred H
Q 021380 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 236 ~ 236 (252)
T PRK14255 236 L 236 (252)
T ss_pred c
Confidence 3
No 197
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.9e-33 Score=249.10 Aligned_cols=195 Identities=14% Similarity=0.169 Sum_probs=154.6
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------CCe
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDV 151 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------~~~ 151 (313)
|+++|+++.|++ . +|+|+||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.++|.+. .+.
T Consensus 1 l~~~~l~~~~~~-~----~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~---p~~G~v~i~g~~~~~~~~~~~~ 72 (235)
T cd03299 1 LKVENLSKDWKE-F----KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK---PDSGKILLNGKDITNLPPEKRD 72 (235)
T ss_pred CeeEeEEEEeCC-c----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcCcCChhHcC
Confidence 468999999975 3 8999999999999999999999999999999999999 9999999998643 236
Q ss_pred EEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCccE
Q 021380 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a~~ 229 (313)
++|++|+...++ .+|+.+|+.+.....+.......+.+.++++.++.. .+.++..|||||+||++||++++.++++
T Consensus 73 i~~~~q~~~~~~--~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 150 (235)
T cd03299 73 ISYVPQNYALFP--HMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKI 150 (235)
T ss_pred EEEEeecCccCC--CccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 899999964332 479999998765443322222334567788887743 4667789999999999999999999999
Q ss_pred EEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 230 VIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 230 li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
+++|+|+..||. .+++.++++.. .++++||+++++.. |++ |++++.|+..++.
T Consensus 151 lllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 151 LLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999 34455555432 24799999998765 444 8888888766553
No 198
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=3.2e-33 Score=277.11 Aligned_cols=205 Identities=15% Similarity=0.176 Sum_probs=158.2
Q ss_pred CCeEEEccceeEccccc-------cccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC
Q 021380 75 IPVVEARCMDEVYDALA-------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~-------~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~ 147 (313)
.++|+++||++.|+... ....+|++|||+|++|+++||+||||||||||+|+|+|++ |++|+|+++|.+
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~----~~~G~i~~~g~~ 348 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI----NSQGEIWFDGQP 348 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC----CCCcEEEECCEE
Confidence 35799999999996210 0123899999999999999999999999999999999998 789999998853
Q ss_pred C-----------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcC--CCCCccHHHHHHHHHHhhcC---CCccCCCCCc
Q 021380 148 P-----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG--APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDH 211 (313)
Q Consensus 148 ~-----------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~--~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSg 211 (313)
. ...++|++|+......+.+|+.+|+.+....++ .+.....+++.++++.++.. .++++.+|||
T Consensus 349 i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 428 (529)
T PRK15134 349 LHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSG 428 (529)
T ss_pred ccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCH
Confidence 2 235899999952112234799999987644332 22222335677888888853 4677889999
Q ss_pred cCCCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccC
Q 021380 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTG 276 (313)
Q Consensus 212 GekqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G 276 (313)
||||||+||++++.++++|++|+|+..||.. +++.|.++.+ .+|+||||++++.. |++ |++++.|
T Consensus 429 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~ 508 (529)
T PRK15134 429 GQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQG 508 (529)
T ss_pred HHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEc
Confidence 9999999999999999999999999999994 4455554432 25799999999876 554 8888888
Q ss_pred ChhHHHH
Q 021380 277 KPPDVAK 283 (313)
Q Consensus 277 ~~~e~~~ 283 (313)
+++++..
T Consensus 509 ~~~~~~~ 515 (529)
T PRK15134 509 DCERVFA 515 (529)
T ss_pred CHHHHhc
Confidence 8877743
No 199
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-33 Score=252.86 Aligned_cols=201 Identities=10% Similarity=0.065 Sum_probs=153.0
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc--ccCCCCceeeeCCCCC----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASSFDSQVKP---- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~--~~~p~~G~i~~~~~~~---- 148 (313)
.++|+++|+++.|++.. +|+|+||+|.+|+++||+|+||||||||+++|+|+++ ..+|++|+|.++|.+.
T Consensus 22 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 97 (271)
T PRK14238 22 KVVFDTQNLNLWYGEDH----ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKS 97 (271)
T ss_pred ceEEEEeeeEEEECCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccc
Confidence 45899999999998766 9999999999999999999999999999999999985 1124899999988542
Q ss_pred ------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCC-ccHHHHHHHHHHhh------cCCCccCCCCCccCCC
Q 021380 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLR------NQGSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~-~~~~~~~~~l~~l~------~~~~~~~~~LSgGekq 215 (313)
.+.++|++|++.. +. .|+.+|+.+.....+.... .....+.+.++.++ ...+.++..|||||+|
T Consensus 98 ~~~~~~~~~i~~v~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~q 174 (271)
T PRK14238 98 YSVEELRTNVGMVFQKPNP-FP--KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQ 174 (271)
T ss_pred ccHHHHhhhEEEEecCCcc-cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHH
Confidence 2358999999643 32 4999999876543332211 11223445555442 2235677899999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhhH----HHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~~----~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
|++||++++.+++++++|+|+..||.... +.|.++.. .+|++|||++++.. |++ |+++..|.+.++.
T Consensus 175 rv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 175 RLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999443 33434332 25799999998765 444 8888888877664
No 200
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-33 Score=252.94 Aligned_cols=201 Identities=11% Similarity=0.047 Sum_probs=154.3
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCceeeeCCCCC----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVKP---- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~--~~p~~G~i~~~~~~~---- 148 (313)
.++|+++|+++.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++. ..|++|+|.++|.+.
T Consensus 23 ~~~l~~~nl~~~~~~~~----il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~ 98 (272)
T PRK14236 23 QTALEVRNLNLFYGDKQ----ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK 98 (272)
T ss_pred CcEEEEEEEEEEECCee----EeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc
Confidence 45799999999998766 99999999999999999999999999999999999860 002799999988542
Q ss_pred ------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC-CccHHHHHHHHHHhhcC------CCccCCCCCccCCC
Q 021380 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~LSgGekq 215 (313)
.+.++|++|+... +. .|+.+|+.+.....+... ....+.+.++++.++.. .+..+.+|||||+|
T Consensus 99 ~~~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 175 (272)
T PRK14236 99 VDVAELRRRVGMVFQRPNP-FP--KSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQ 175 (272)
T ss_pred cCHHHHhccEEEEecCCcc-Cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHH
Confidence 2358999998643 32 399999987644333211 11234456667766632 35667899999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
|++||++++.+++++++|+|+..||... ++.+.++.+ .+|++|||++++.. |++ |+++..|++.++.
T Consensus 176 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 176 RLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred HHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHh
Confidence 9999999999999999999999999944 344444432 25799999998765 544 8888888877664
No 201
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=4.9e-33 Score=275.29 Aligned_cols=203 Identities=16% Similarity=0.211 Sum_probs=155.6
Q ss_pred CCeEEEccceeEcccc-ccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeC-CCC-----
Q 021380 75 IPVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS-QVK----- 147 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~-~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~-~~~----- 147 (313)
.++|+++||++.|++. .....+|+|+||+|.+|++++|+||||||||||+|+|+|+++ |++|+|.++ |..
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~g~~~~~~~ 353 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE---PTSGEVNVRVGDEWVDMT 353 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEEecCCcccccc
Confidence 4589999999999530 001128999999999999999999999999999999999999 999999994 421
Q ss_pred ---------CCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC-------CCccCCCCCc
Q 021380 148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------GSVYAPSFDH 211 (313)
Q Consensus 148 ---------~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------~~~~~~~LSg 211 (313)
..+.++|++|+...+ +.+|+.+|+.+.... ..+.....+++.++++.++.. .++++.+|||
T Consensus 354 ~~~~~~~~~~~~~i~~v~q~~~l~--~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSg 430 (520)
T TIGR03269 354 KPGPDGRGRAKRYIGILHQEYDLY--PHRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSE 430 (520)
T ss_pred ccchhhHHHHhhhEEEEccCcccC--CCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCH
Confidence 123589999985432 358999999875322 222222234567888888853 3577889999
Q ss_pred cCCCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccC
Q 021380 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTG 276 (313)
Q Consensus 212 GekqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G 276 (313)
|||||++||++++.++++|++|+|+..||.. +++.|.++.. .+|++|||++++.. |++ |++++.|
T Consensus 431 Gq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g 510 (520)
T TIGR03269 431 GERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIG 510 (520)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999994 4444444432 25799999999876 444 7888888
Q ss_pred ChhHHHH
Q 021380 277 KPPDVAK 283 (313)
Q Consensus 277 ~~~e~~~ 283 (313)
.+.++..
T Consensus 511 ~~~~~~~ 517 (520)
T TIGR03269 511 DPEEIVE 517 (520)
T ss_pred CHHHHHh
Confidence 7776643
No 202
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-33 Score=246.03 Aligned_cols=174 Identities=16% Similarity=0.149 Sum_probs=138.4
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---------
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--------- 148 (313)
+.+ ||+|+|++.. + |+||+|++ ++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~~~-~l~~~~~~~~----~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 70 (214)
T cd03297 2 LCV-DIEKRLPDFT----L--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK---PDGGTIVLNGTVLFDSRKKINL 70 (214)
T ss_pred cee-eeeEecCCee----e--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccccchhhh
Confidence 445 8999999865 5 99999999 9999999999999999999999999 9999999988542
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhc
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al 223 (313)
.+.++|++|+...++ .+|+.+|+.+....+ ......+++.++++.++.. .+.++.+||||||||++||+++
T Consensus 71 ~~~~~~i~~~~q~~~~~~--~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 146 (214)
T cd03297 71 PPQQRKIGLVFQQYALFP--HLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARAL 146 (214)
T ss_pred hhHhhcEEEEecCCccCC--CCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHH
Confidence 235899999964332 479999988754322 1112344577888888743 3667789999999999999999
Q ss_pred ccCccEEEEcCcccccChhh----HHHHHHhhc----CeEEEEcChHHHHH
Q 021380 224 GLQHKVVIVDGNYLFLDGGV----WKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE~~----~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
+.+++++++|+|+..||... .+.+.++.+ .+|++|||++++..
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 197 (214)
T cd03297 147 AAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEY 197 (214)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHH
Confidence 99999999999999999943 444444432 24799999998764
No 203
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=9.5e-33 Score=240.73 Aligned_cols=175 Identities=13% Similarity=0.003 Sum_probs=141.2
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------- 149 (313)
||+++|+++.|++.. +|+++||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 1 ml~~~~l~~~~~~~~----il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~ 73 (200)
T PRK13540 1 MLDVIELDFDYHDQP----LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN---PEKGEILFERQSIKKDLCTYQ 73 (200)
T ss_pred CEEEEEEEEEeCCee----EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeeEEECCCccccCHHHHH
Confidence 488999999998766 9999999999999999999999999999999999999 99999999987532
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a 227 (313)
+.++|++|+...++ .+|+.+|+.+..... . ....+.++++.++. ..++++..||+||+||++||++++.++
T Consensus 74 ~~i~~~~q~~~~~~--~~tv~~~~~~~~~~~---~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p 146 (200)
T PRK13540 74 KQLCFVGHRSGINP--YLTLRENCLYDIHFS---P--GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKA 146 (200)
T ss_pred hheEEeccccccCc--CCCHHHHHHHHHhcC---c--chHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCC
Confidence 35899999854322 489999988753211 1 23456778887774 335667799999999999999999999
Q ss_pred cEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHH
Q 021380 228 KVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAM 265 (313)
Q Consensus 228 ~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~ 265 (313)
+++++|+|+..||.. +.+.|.++.+ .+|++||+.+.+.
T Consensus 147 ~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 191 (200)
T PRK13540 147 KLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLN 191 (200)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhcc
Confidence 999999999999994 4444444322 2479999987764
No 204
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.6e-33 Score=245.57 Aligned_cols=176 Identities=17% Similarity=0.207 Sum_probs=143.2
Q ss_pred CCeEEEccceeEcccccc-----ccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC
Q 021380 75 IPVVEARCMDEVYDALAQ-----RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~-----~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~ 149 (313)
+++++++||+|.|..... .+.+++||||+|++||++||+|+||||||||.|+|+|+++ |++|+|+++|.+..
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~---pt~G~i~f~g~~i~ 78 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE---PTSGEILFEGKDIT 78 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC---CCCceEEEcCcchh
Confidence 468999999999964311 2459999999999999999999999999999999999999 99999999886521
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc---CCCccCCCCCccCCCcchhhhhcccC
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~LSgGekqRv~la~al~~~ 226 (313)
. ++ .....+++.++|+.++. ...+++++|||||+||+.||+|++.+
T Consensus 79 ~----------------~~---------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~ 127 (268)
T COG4608 79 K----------------LS---------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALN 127 (268)
T ss_pred h----------------cc---------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhC
Confidence 1 11 12234568889999883 35678889999999999999999999
Q ss_pred ccEEEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 227 HKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 227 a~~li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
+++++.|+++..||- .++..+.++.+. .+|||||+..+.. |++ |++++.|..+++..+
T Consensus 128 P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~ 200 (268)
T COG4608 128 PKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSN 200 (268)
T ss_pred CcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhC
Confidence 999999999999998 344444444332 3799999999987 555 999999999988763
No 205
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.98 E-value=9.3e-33 Score=240.37 Aligned_cols=175 Identities=15% Similarity=0.029 Sum_probs=140.7
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------CC
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PD 150 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------~~ 150 (313)
|+++|+++.|++.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+
T Consensus 1 l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (198)
T TIGR01189 1 LAARNLACSRGERM----LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR---PDSGEVRWNGTALAEQRDEPHR 73 (198)
T ss_pred CEEEEEEEEECCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccchHHhhh
Confidence 46899999998876 9999999999999999999999999999999999999 9999999998652 24
Q ss_pred eEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCcc
Q 021380 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~ 228 (313)
.++|++|+... + +.+|+.+|+.+.....+ .....+.++++.++. ..++++.+|||||+||++||++++.+++
T Consensus 74 ~i~~~~q~~~~-~-~~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 147 (198)
T TIGR01189 74 NILYLGHLPGL-K-PELSALENLHFWAAIHG----GAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAP 147 (198)
T ss_pred heEEeccCccc-c-cCCcHHHHHHHHHHHcC----CcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 58899988543 2 24799999987654332 123456778888774 3466788999999999999999999999
Q ss_pred EEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHH
Q 021380 229 VVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAM 265 (313)
Q Consensus 229 ~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~ 265 (313)
++++|+|+..||.. +++.|.++.+ .+|++||+...+.
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~ 191 (198)
T TIGR01189 148 LWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV 191 (198)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc
Confidence 99999999999983 4444444422 2579999976543
No 206
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.98 E-value=9.3e-33 Score=241.01 Aligned_cols=174 Identities=16% Similarity=0.030 Sum_probs=140.2
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------CC
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PD 150 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------~~ 150 (313)
|+++||++.|+++. +|+++||+|++|+++||+|+||||||||+++|+|+++ |++|+|.++|.+. .+
T Consensus 1 l~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (201)
T cd03231 1 LEADELTCERDGRA----LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP---PLAGRVLLNGGPLDFQRDSIAR 73 (201)
T ss_pred CEEEEEEEEeCCce----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccccHHhhh
Confidence 46899999998776 9999999999999999999999999999999999999 9999999988652 23
Q ss_pred eEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCcc
Q 021380 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a~ 228 (313)
.++|++|+...++ .+|+.+|+.+.... ...+++.++++.++.. .++++.+|||||+||+++|++++.+++
T Consensus 74 ~i~~~~q~~~~~~--~~tv~e~l~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 145 (201)
T cd03231 74 GLLYLGHAPGIKT--TLSVLENLRFWHAD------HSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRP 145 (201)
T ss_pred heEEeccccccCC--CcCHHHHHHhhccc------ccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 5899999854322 47999998764211 1345677888888743 466778999999999999999999999
Q ss_pred EEEEcCcccccChhhHH----HHHHhhc---CeEEEEcChHHHHH
Q 021380 229 VVIVDGNYLFLDGGVWK----DVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 229 ~li~d~~~llLDE~~~~----~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
++++|+|+..||....+ .+.++.+ .+|++|||......
T Consensus 146 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~ 190 (201)
T cd03231 146 LWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSE 190 (201)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhh
Confidence 99999999999994444 4433322 24799999776543
No 207
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.98 E-value=3.7e-33 Score=249.40 Aligned_cols=174 Identities=14% Similarity=0.064 Sum_probs=134.0
Q ss_pred eEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------CCeEEEEec
Q 021380 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PDVATVLPM 157 (313)
Q Consensus 85 ~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------~~~i~~v~q 157 (313)
+.|+.+. +|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+. .+.++|+++
T Consensus 29 ~~~~~~~----il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~~~~ 101 (236)
T cd03267 29 RKYREVE----ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ---PTSGEVRVAGLVPWKRRKKFLRRIGVVFG 101 (236)
T ss_pred cccCCee----eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEccccchhhcccEEEEcC
Confidence 4455544 9999999999999999999999999999999999999 9999999988542 235889874
Q ss_pred cCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEEEEcCc
Q 021380 158 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 235 (313)
Q Consensus 158 ~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~ 235 (313)
+...++ +.+|+.+|+.+....++.........+.++++.++. ..+.++..|||||+||++||++++.+++++++|+|
T Consensus 102 ~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 180 (236)
T cd03267 102 QKTQLW-WDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEP 180 (236)
T ss_pred CccccC-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 422222 247999998876554443222223455677777763 34667789999999999999999999999999999
Q ss_pred ccccChh----hHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 236 YLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 236 ~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
+..||.. +.+.|.++.+ .+|++|||++++..
T Consensus 181 t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 219 (236)
T cd03267 181 TIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEA 219 (236)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHH
Confidence 9999994 4444444432 24799999998754
No 208
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.98 E-value=4.5e-33 Score=240.74 Aligned_cols=163 Identities=17% Similarity=0.099 Sum_probs=129.1
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC----------CCeEEEEeccCC-CCCc
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----------PDVATVLPMDGF-HLYL 164 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~----------~~~i~~v~q~~~-~~~~ 164 (313)
+|+++||+|.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+. .+.++|++|++. .++
T Consensus 7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~- 82 (190)
T TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR---PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF- 82 (190)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEECCEEccccccchHHHHhhEEEEecChhhccc-
Confidence 9999999999999999999999999999999999999 9999999988542 235899999863 223
Q ss_pred ccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChh
Q 021380 165 SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG 242 (313)
Q Consensus 165 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~ 242 (313)
..|+.+|+.+....++.......+++.++++.++. ..++++.+|||||+||++||++++.+++++++|+|+..||..
T Consensus 83 -~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 161 (190)
T TIGR01166 83 -AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPA 161 (190)
T ss_pred -cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 26999999876443332222223456778888774 346677899999999999999999999999999999999994
Q ss_pred ----hHHHHHHhhc---CeEEEEcChHH
Q 021380 243 ----VWKDVSSMFD---EKWFIEVDLDT 263 (313)
Q Consensus 243 ----~~~~l~~l~~---~~i~vtHd~~~ 263 (313)
+.+.|.++.+ .+|++|||+++
T Consensus 162 ~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 162 GREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 4444444432 24799999875
No 209
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.98 E-value=4.5e-33 Score=266.90 Aligned_cols=194 Identities=15% Similarity=0.134 Sum_probs=160.8
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~----- 149 (313)
+++|+++|++|+|++.. +|++|||++.+||++||+|.||||||||+|+|+|.++ |++|+|.++|+...
T Consensus 6 ~~ll~~~~i~K~FggV~----AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~---p~~G~I~~~G~~~~~~sp~ 78 (500)
T COG1129 6 PPLLELRGISKSFGGVK----ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP---PDSGEILIDGKPVAFSSPR 78 (500)
T ss_pred cceeeeecceEEcCCce----eeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc---CCCceEEECCEEccCCCHH
Confidence 46899999999999988 9999999999999999999999999999999999999 99999999997532
Q ss_pred ----CeEEEEeccCCCCCcccCCcccCHHHHHHhcC----CCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchh
Q 021380 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG----APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 150 ----~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~----~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~l 219 (313)
.-|..|+|+....+ ++||.||+.++..... ..++....++.++|+.++. ..+.++.+||.||||.|+|
T Consensus 79 ~A~~~GI~~V~QEl~L~p--~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeI 156 (500)
T COG1129 79 DALAAGIATVHQELSLVP--NLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEI 156 (500)
T ss_pred HHHhCCcEEEeechhccC--CccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHH
Confidence 23889999965444 5999999987654322 1223344566778888874 3667888999999999999
Q ss_pred hhhcccCccEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHHH---HHH----hhhhccCC
Q 021380 220 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 220 a~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rvi----gr~v~~G~ 277 (313)
|+|+..+++++++|+|+.-|++ .+++.++++.+. +|||||.++++.+ |+. |+.+..++
T Consensus 157 ArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 157 ARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 9999999999999999999998 566677777665 4799999999988 554 77776544
No 210
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=1.2e-32 Score=249.14 Aligned_cols=200 Identities=14% Similarity=0.098 Sum_probs=155.5
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCC------CCC
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ------VKP 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~------~~~ 148 (313)
.++|+++|+++.|+++. +|+|+||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.++| .+.
T Consensus 8 ~~~i~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~---~~~G~v~~~G~~~~~g~~~ 80 (257)
T PRK14246 8 EDVFNISRLYLYINDKA----ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE---IYDSKIKVDGKVLYFGKDI 80 (257)
T ss_pred hhheeeeeEEEecCCce----eEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCcCceeEcCEEEECCccc
Confidence 45799999999999877 9999999999999999999999999999999999998 9997766654 321
Q ss_pred --------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCC-CCccHHHHHHHHHHhhcC------CCccCCCCCccC
Q 021380 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 213 (313)
Q Consensus 149 --------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~l~~~------~~~~~~~LSgGe 213 (313)
...++|++|++..++ .+|+.+|+.+.....+.. .......+.++++.++.. .+..+..||+||
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~ 158 (257)
T PRK14246 81 FQIDAIKLRKEVGMVFQQPNPFP--HLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQ 158 (257)
T ss_pred ccCCHHHHhcceEEEccCCccCC--CCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHH
Confidence 245899999965433 479999998764432221 112234566777777742 345677999999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhH
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e 280 (313)
+||++||++++.+++++++|+|+..||... .+.+.++.+ .+|++|||++.+.. |++ |+++..|.+++
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~ 238 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNE 238 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999944 444443332 35799999998865 544 88888888777
Q ss_pred HHH
Q 021380 281 VAK 283 (313)
Q Consensus 281 ~~~ 283 (313)
+..
T Consensus 239 ~~~ 241 (257)
T PRK14246 239 IFT 241 (257)
T ss_pred HHh
Confidence 653
No 211
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.98 E-value=4.9e-33 Score=274.10 Aligned_cols=194 Identities=12% Similarity=0.119 Sum_probs=152.3
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
+++|+++||++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~~~l~~~~l~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~~ 74 (501)
T PRK11288 2 SPYLSFDGIGKTFPGVK----ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ---PDAGSILIDGQEMRFASTT 74 (501)
T ss_pred CceEEEeeeEEEECCEE----EEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHH
Confidence 35899999999998766 9999999999999999999999999999999999999 9999999988542
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHH--hcC-CCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhh
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHA--RRG-APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~--~~~-~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la 220 (313)
.+.++|++|+...++ .+|+.+|+.+... ..+ .......+++.++++.++.. .++++.+||||||||++||
T Consensus 75 ~~~~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~la 152 (501)
T PRK11288 75 AALAAGVAIIYQELHLVP--EMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIA 152 (501)
T ss_pred HHHhCCEEEEEechhccC--CCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHH
Confidence 235899999864333 4899999887532 111 11112234677888888843 4667789999999999999
Q ss_pred hhcccCccEEEEcCcccccChhhH----HHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCC
Q 021380 221 ILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 221 ~al~~~a~~li~d~~~llLDE~~~----~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~ 277 (313)
++++.+++++++|+|+..||.... +.|.++.+ .+|++|||++++.. |++ |+++..+.
T Consensus 153 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 153 KALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred HHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 999999999999999999999444 44444332 25799999998875 444 66665443
No 212
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=1.7e-32 Score=250.36 Aligned_cols=202 Identities=13% Similarity=0.079 Sum_probs=152.6
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCceeeeCCCCC---
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP--- 148 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~--~p~~G~i~~~~~~~--- 148 (313)
..++|+++||++.|++.. +|+++||+|.+|++++|+||||||||||+++|+|+++.. .|++|+|.++|.+.
T Consensus 17 ~~~~l~~~nl~~~~~~~~----~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~ 92 (274)
T PRK14265 17 DHSVFEVEGVKVFYGGFL----ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDS 92 (274)
T ss_pred CCceEEEeeEEEEeCCeE----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccc
Confidence 345899999999998766 999999999999999999999999999999999998510 01589999988542
Q ss_pred -------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc------CCCccCCCCCccCCC
Q 021380 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGD 215 (313)
Q Consensus 149 -------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~~~~LSgGekq 215 (313)
...++|++|+... +. .|+.+|+.+.....+... ...+.+.+.++.++. ..+.++.+|||||+|
T Consensus 93 ~~~~~~~~~~i~~v~q~~~l-~~--~tv~~nl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~q 168 (274)
T PRK14265 93 QINSVKLRRQVGMVFQRPNP-FP--KSIYENIAFAPRANGYKG-NLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQ 168 (274)
T ss_pred cchhHHHhhcEEEEccCCcc-cc--ccHHHHHHhHHHhcCchH-HHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHH
Confidence 2358999999643 32 489999887643332211 122334555665542 245677899999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhhH----HHHHHhhc--CeEEEEcChHHHHH---HH-------------Hhhhh
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD--EKWFIEVDLDTAMQ---RV-------------LKRHI 273 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~~----~~l~~l~~--~~i~vtHd~~~~~~---rv-------------igr~v 273 (313)
|++||++++.++++|++|+|+..||.... +.|.++.+ .+|++|||++++.. |+ -|+++
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~ 248 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV 248 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 99999999999999999999999999444 44444332 25799999999876 32 15777
Q ss_pred ccCChhHHHH
Q 021380 274 STGKPPDVAK 283 (313)
Q Consensus 274 ~~G~~~e~~~ 283 (313)
+.|++.++..
T Consensus 249 ~~g~~~~~~~ 258 (274)
T PRK14265 249 EFSPTEQMFG 258 (274)
T ss_pred EeCCHHHHHh
Confidence 7888877753
No 213
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=1.9e-32 Score=248.42 Aligned_cols=198 Identities=14% Similarity=0.094 Sum_probs=153.1
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----CceeeeCCCCC--
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSFDSQVKP-- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~-----~G~i~~~~~~~-- 148 (313)
++|+++|+++.|++.. +|+|+||+|++|+++||+|+||||||||+++|+|+++ |+ +|+|.++|.+.
T Consensus 6 ~~l~~~nl~~~~~~~~----il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~g~i~~~G~i~~~g~~i~~ 78 (261)
T PRK14258 6 PAIKVNNLSFYYDTQK----ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQNIYE 78 (261)
T ss_pred ceEEEeeEEEEeCCee----EeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCccccceEEECCEEhhc
Confidence 4799999999998765 9999999999999999999999999999999999998 75 79998887542
Q ss_pred --------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCC-CCCccHHHHHHHHHHhhcC------CCccCCCCCccC
Q 021380 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 213 (313)
Q Consensus 149 --------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~l~~~------~~~~~~~LSgGe 213 (313)
.+.++|++|+.. ++. +|+.+|+.+.....+. +.....+.+.++++.++.. .+.++.+|||||
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~-l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq 155 (261)
T PRK14258 79 RRVNLNRLRRQVSMVHPKPN-LFP--MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQ 155 (261)
T ss_pred cccchHHhhccEEEEecCCc-cCc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHH
Confidence 234899999854 332 6999998876443332 1112234456777777642 356777999999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH---------hhhh
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL---------KRHI 273 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi---------gr~v 273 (313)
+||++||++++.+++++++|+|+..||.. +.+.+.++.. .+|++|||++++.. |++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 99999999999999999999999999994 3444444321 24799999999876 332 5667
Q ss_pred ccCChhHHHH
Q 021380 274 STGKPPDVAK 283 (313)
Q Consensus 274 ~~G~~~e~~~ 283 (313)
..|+++++..
T Consensus 236 ~~~~~~~~~~ 245 (261)
T PRK14258 236 EFGLTKKIFN 245 (261)
T ss_pred EeCCHHHHHh
Confidence 7788877643
No 214
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.98 E-value=2.7e-32 Score=271.88 Aligned_cols=195 Identities=15% Similarity=0.032 Sum_probs=152.5
Q ss_pred CCeEEEccceeEcc-ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEE
Q 021380 75 IPVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 153 (313)
Q Consensus 75 ~~~l~v~~ls~~y~-~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~ 153 (313)
++||+++||++.|+ ++. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++. ..++
T Consensus 4 ~~~l~i~~l~~~y~~~~~----il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~---p~~G~i~~~~~---~~i~ 73 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKKQ----ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFEGEARPAPG---IKVG 73 (556)
T ss_pred cEEEEEeeEEEEeCCCCe----eeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---CEEE
Confidence 35899999999998 666 9999999999999999999999999999999999999 99999998753 4599
Q ss_pred EEeccCCCCCcccCCcccCHHHHHHh--------------cCCCCC----------------------ccHHHHHHHHHH
Q 021380 154 VLPMDGFHLYLSQLDAMEDPKEAHAR--------------RGAPWT----------------------FNPLLLLNCLKN 197 (313)
Q Consensus 154 ~v~q~~~~~~~~~ltv~e~l~~~~~~--------------~~~~~~----------------------~~~~~~~~~l~~ 197 (313)
|++|++..+ +.+|+.+|+.+.... ...... ....++.++++.
T Consensus 74 ~v~Q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 151 (556)
T PRK11819 74 YLPQEPQLD--PEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDA 151 (556)
T ss_pred EEecCCCCC--CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHh
Confidence 999996432 258999998764210 011100 012345667777
Q ss_pred hhc-CCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhc----CeEEEEcChHHHHH---HHH
Q 021380 198 LRN-QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL 269 (313)
Q Consensus 198 l~~-~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi 269 (313)
++. ..++++.+|||||||||+||++++.++++|++|+|+..||+...+.+.+++. .+|+||||++++.. +++
T Consensus 152 ~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~ 231 (556)
T PRK11819 152 LRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWIL 231 (556)
T ss_pred CCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEE
Confidence 774 3467788999999999999999999999999999999999955554444433 36799999999876 544
Q ss_pred ----hhhh-ccCChhHH
Q 021380 270 ----KRHI-STGKPPDV 281 (313)
Q Consensus 270 ----gr~v-~~G~~~e~ 281 (313)
|+++ ..|+..+.
T Consensus 232 ~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 232 ELDRGRGIPWEGNYSSW 248 (556)
T ss_pred EEeCCEEEEecCCHHHH
Confidence 7765 56766653
No 215
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.98 E-value=1.3e-32 Score=225.31 Aligned_cols=194 Identities=17% Similarity=0.157 Sum_probs=162.7
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC---------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------- 147 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~--------- 147 (313)
.|+++|+++.||... +|-||+|+.+.||.+.++||+|+|||||+|.|.-+.- |.+|+..+.+..
T Consensus 2 sirv~~in~~yg~~q----~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~---p~sg~l~ia~~~fd~s~~~~~ 74 (242)
T COG4161 2 SIQLNGINCFYGAHQ----ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPSD 74 (242)
T ss_pred ceEEcccccccccch----heeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC---CCCCeEEecccccccccCccH
Confidence 388999999999988 9999999999999999999999999999999988887 999999887643
Q ss_pred -----CCCeEEEEeccCCCCCcccCCcccCHHHH-HHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchh
Q 021380 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 148 -----~~~~i~~v~q~~~~~~~~~ltv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~l 219 (313)
.++.+|++||.. ++++ ++||.+|+... .+..|.++.....++.++|+++. ...++.+-.|||||+|||+|
T Consensus 75 k~i~~lr~~vgmvfqqy-~lwp-hltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvai 152 (242)
T COG4161 75 KAIRDLRRNVGMVFQQY-NLWP-HLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAI 152 (242)
T ss_pred HHHHHHHHhhhhhhhhh-ccCc-hhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHH
Confidence 134599999994 4443 69999997664 45667777667777889999888 45677777999999999999
Q ss_pred hhhcccCccEEEEcCcccccChh----hHHHHHHhhcCe---EEEEcChHHHHH---HHH----hhhhccCChh
Q 021380 220 DILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDEK---WFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 220 a~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~~~---i~vtHd~~~~~~---rvi----gr~v~~G~~~ 279 (313)
|+|++..+.+|++|+|+.-||++ +.+.|+++...+ ++|||..+.+.+ +++ |++++.|+..
T Consensus 153 aralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred HHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchh
Confidence 99999999999999999999994 455566666555 599999999887 665 8999988643
No 216
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=2e-32 Score=246.59 Aligned_cols=201 Identities=12% Similarity=0.108 Sum_probs=154.0
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc--ccCCCCceeeeCCCCC----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASSFDSQVKP---- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~--~~~p~~G~i~~~~~~~---- 148 (313)
|-+|+++||++.|+++. +|+|+||+|.+|++++|+||||||||||+++|+|++. ..+|++|+|.++|.+.
T Consensus 1 ~~~l~~~~v~~~~~~~~----~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 76 (250)
T PRK14266 1 MYRIEVENLNTYFDDAH----ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA 76 (250)
T ss_pred CcEEEEEeEEEEeCCeE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccc
Confidence 44799999999998766 9999999999999999999999999999999999863 1113899999998652
Q ss_pred ------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC-CccHHHHHHHHHHhhc------CCCccCCCCCccCCC
Q 021380 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~LSgGekq 215 (313)
.+.++|++|++.. +. .|+.+|+.+....++... ....+.+.++++.++. ..+..+..||+||+|
T Consensus 77 ~~~~~~~~~i~~~~q~~~~-~~--~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~q 153 (250)
T PRK14266 77 VDVVELRKKVGMVFQKPNP-FP--KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQ 153 (250)
T ss_pred ccHHHHhhheEEEecCCcc-Cc--chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHH
Confidence 2359999999643 32 489999987644332211 1123445666676653 235677899999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
|++||++++.+++++++|+|+..||... .+.|.++.. .+|++|||++++.. +++ |+++..|++.++.
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 9999999999999999999999999943 444444432 25799999998877 433 8888888877764
No 217
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.98 E-value=1.1e-32 Score=299.93 Aligned_cols=202 Identities=15% Similarity=0.093 Sum_probs=168.2
Q ss_pred CCeEEEccceeEccc--cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC----
Q 021380 75 IPVVEARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~--~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~---- 148 (313)
..+|+++||+|.|++ +. +|+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~----aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~---ptsG~I~i~G~~i~~~~ 2007 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSP----AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT---VTSGDATVAGKSILTNI 2007 (2272)
T ss_pred CceEEEEEEEEEECCCCce----EEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECcchH
Confidence 357999999999985 34 9999999999999999999999999999999999999 9999999998653
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhc
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al 223 (313)
.+.+||++|++..+. .+|++|++.+....++.+.....+.+.++++.++. ..++++.+||||||||+++|+|+
T Consensus 2008 ~~~r~~IGy~pQ~~~L~~--~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~AL 2085 (2272)
T TIGR01257 2008 SDVHQNMGYCPQFDAIDD--LLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIAL 2085 (2272)
T ss_pred HHHhhhEEEEeccccCCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHH
Confidence 245999999865433 58999999987777766544334556778888874 45778889999999999999999
Q ss_pred ccCccEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHHH---HHH----hhhhccCChhHHHHHH
Q 021380 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWR 285 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~~ 285 (313)
+.+++++++|||+..||+ .+++.|.++.+. +|++||+++++.. |++ |+++..|+++++...+
T Consensus 2086 i~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~ 2161 (2272)
T TIGR01257 2086 IGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKF 2161 (2272)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHh
Confidence 999999999999999999 455555555432 5799999999987 554 8899999998876554
No 218
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.98 E-value=2.4e-33 Score=250.61 Aligned_cols=191 Identities=14% Similarity=0.168 Sum_probs=145.4
Q ss_pred EEEccceeEccc--cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 78 VEARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~--~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
|+++|+++.|++ .. +|+|+||++.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 i~~~~l~~~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (237)
T cd03252 1 ITFEHVRFRYKPDGPV----ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV---PENGRVLVDGHDLALADPAW 73 (237)
T ss_pred CEEEEEEEecCCCCcc----ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCeehHhcCHHH
Confidence 468999999964 33 8999999999999999999999999999999999999 9999999998652
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHH---------HHHHHHhh----cCCCccCCCCCccCC
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLL---------LNCLKNLR----NQGSVYAPSFDHGVG 214 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~---------~~~l~~l~----~~~~~~~~~LSgGek 214 (313)
.+.++|++|++.. +. .|+.+|+.+... .. ....+ .++++.+. ...+.++.+||||||
T Consensus 74 ~~~~i~~~~q~~~~-~~--~tv~~nl~~~~~--~~----~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~ 144 (237)
T cd03252 74 LRRQVGVVLQENVL-FN--RSIRDNIALADP--GM----SMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQR 144 (237)
T ss_pred HhhcEEEEcCCchh-cc--chHHHHhhccCC--CC----CHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHH
Confidence 2458999999643 32 699999865321 11 11111 22233331 112456789999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~ 282 (313)
||++||++++.+++++++|+|+..||.. +.+.|.++.. .+|++|||++++.. +++ |+++..|++.++.
T Consensus 145 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 224 (237)
T cd03252 145 QRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELL 224 (237)
T ss_pred HHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999994 4444444432 24799999998854 443 8888888877765
Q ss_pred HH
Q 021380 283 KW 284 (313)
Q Consensus 283 ~~ 284 (313)
..
T Consensus 225 ~~ 226 (237)
T cd03252 225 AE 226 (237)
T ss_pred hc
Confidence 44
No 219
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.98 E-value=7.9e-33 Score=272.60 Aligned_cols=196 Identities=16% Similarity=0.154 Sum_probs=153.0
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC--CCceeeeCCCCC------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKASSFDSQVKP------ 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p--~~G~i~~~~~~~------ 148 (313)
+|+++||++.|+++. +|+||||++++|+++||+||||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 1 ~l~i~~l~~~~~~~~----il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~---~~~~~G~i~~~g~~~~~~~~~ 73 (500)
T TIGR02633 1 LLEMKGIVKTFGGVK----ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP---HGTWDGEIYWSGSPLKASNIR 73 (500)
T ss_pred CEEEEeEEEEeCCeE----eecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCCHH
Confidence 488999999998766 9999999999999999999999999999999999997 7 799999988542
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhc--C--CCCCccHHHHHHHHHHhhcCC---CccCCCCCccCCCcch
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--G--APWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVE 218 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~--~--~~~~~~~~~~~~~l~~l~~~~---~~~~~~LSgGekqRv~ 218 (313)
.+.++|++|+...++ .+|+.+|+.+..... + .......+++.++++.++... ++++.+|||||||||+
T Consensus 74 ~~~~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ 151 (500)
T TIGR02633 74 DTERAGIVIIHQELTLVP--ELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVE 151 (500)
T ss_pred HHHhCCEEEEeeccccCC--CCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHH
Confidence 235899999964333 489999987754321 1 111122345678888888532 3567899999999999
Q ss_pred hhhhcccCccEEEEcCcccccChhh----HHHHHHhhcC---eEEEEcChHHHHH---HHH----hhhhccCChhHH
Q 021380 219 DDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 219 la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~~---~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~ 281 (313)
||++++.+++++++|+|+..||... .+.|.++.+. +|++|||++++.. |++ |+++..|.+.++
T Consensus 152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999999944 4444443332 4799999999876 444 787777766543
No 220
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.97 E-value=1.7e-32 Score=242.54 Aligned_cols=183 Identities=17% Similarity=0.066 Sum_probs=143.8
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
+|+++|+++.|++..+...+|+|+||++.+|++++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (220)
T TIGR02982 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS---VQEGSLKVLGQELYGASEKEL 77 (220)
T ss_pred CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEhHhcCHhHH
Confidence 37899999999752111239999999999999999999999999999999999999 9999999988642
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcC-CCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhh
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~a 222 (313)
.+.++|++|++..++ .+|+.+|+.+....+. .........+.++++.++.. .+..+.+||+||+||++||++
T Consensus 78 ~~~~~~i~~~~q~~~~~~--~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~lara 155 (220)
T TIGR02982 78 VQLRRNIGYIFQAHNLLG--FLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARA 155 (220)
T ss_pred HHHHhheEEEcCChhhcC--CCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHH
Confidence 245999999964433 4799999987654332 12222234577888888743 456777999999999999999
Q ss_pred cccCccEEEEcCcccccChhh----HHHHHHhhc----CeEEEEcChHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD----EKWFIEVDLDTA 264 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE~~----~~~l~~l~~----~~i~vtHd~~~~ 264 (313)
++.+++++++|+|+..||... .+.+.++.+ .+|++|||++..
T Consensus 156 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~ 205 (220)
T TIGR02982 156 LVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL 205 (220)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 999999999999999999944 455554432 247999999853
No 221
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.7e-32 Score=247.22 Aligned_cols=198 Identities=11% Similarity=0.054 Sum_probs=150.6
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCceeeeCCCCC-------
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVKP------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~--~~p~~G~i~~~~~~~------- 148 (313)
-+++||++.|++.. +|+++||+|.+|++++|+|+||||||||+++|+|+++. ..|++|+|.++|.+.
T Consensus 6 ~~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 81 (251)
T PRK14244 6 ASVKNLNLWYGSKQ----ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNV 81 (251)
T ss_pred EEeeeEEEEECCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccch
Confidence 36899999998766 99999999999999999999999999999999999740 003699999988542
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC--CccHHHHHHHHHHhhcC------CCccCCCCCccCCCcc
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW--TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPV 217 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~--~~~~~~~~~~l~~l~~~------~~~~~~~LSgGekqRv 217 (313)
.+.++|++|++.. +. .|+.+|+.+.....+... ......+.++++.++.. .+..+..|||||+||+
T Consensus 82 ~~~~~~i~~v~q~~~~-~~--~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 158 (251)
T PRK14244 82 VLLRAKVGMVFQKPNP-FP--KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRL 158 (251)
T ss_pred HHHhhhEEEEecCccc-cc--CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHH
Confidence 2358999999643 32 389999887643333211 11233456777887742 2456779999999999
Q ss_pred hhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 218 EDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 218 ~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
+||++++.+++++++|+|+..||.. +.+.|.++.. .+|++|||++++.. |++ |+++..|.+.++.
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 159 CIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999994 3444444432 25799999998765 554 8888888876654
No 222
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.8e-32 Score=270.38 Aligned_cols=193 Identities=13% Similarity=0.096 Sum_probs=154.7
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEE
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v 155 (313)
++|+++||++.|+++. +|+++||+|.+|++++|+||||||||||+|+|+|+++ |++|+|.+++. ..++|+
T Consensus 318 ~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~---~~i~~~ 387 (530)
T PRK15064 318 NALEVENLTKGFDNGP----LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE---PDSGTVKWSEN---ANIGYY 387 (530)
T ss_pred ceEEEEeeEEeeCCce----eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCc---eEEEEE
Confidence 4899999999998766 9999999999999999999999999999999999999 99999999874 459999
Q ss_pred eccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc---CCCccCCCCCccCCCcchhhhhcccCccEEEE
Q 021380 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (313)
Q Consensus 156 ~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~LSgGekqRv~la~al~~~a~~li~ 232 (313)
+|+....+.+.+|+.+++.+.. . .....+.+.++++.++. ..++++.+||||||||++||++++.++++|++
T Consensus 388 ~q~~~~~~~~~~t~~~~~~~~~----~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllL 462 (530)
T PRK15064 388 AQDHAYDFENDLTLFDWMSQWR----Q-EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVM 462 (530)
T ss_pred cccccccCCCCCcHHHHHHHhc----c-CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9985322333478888765421 1 11234567788888874 24678889999999999999999999999999
Q ss_pred cCcccccChhhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhh-ccCChhHHHH
Q 021380 233 DGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHI-STGKPPDVAK 283 (313)
Q Consensus 233 d~~~llLDE~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v-~~G~~~e~~~ 283 (313)
|+|+..||....+.+.+++. .+|+||||++++.. |++ |+++ ..|++.++..
T Consensus 463 DEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 463 DEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 99999999955444444432 36799999998876 444 7776 6777766543
No 223
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.3e-32 Score=247.30 Aligned_cols=197 Identities=14% Similarity=0.082 Sum_probs=153.1
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCceeeeCCCCC--
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP-- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~i~~~~~~~-- 148 (313)
.+|+++|+++.|+++. +|+|+||+|++|++++|+|+||||||||+++|+|+++ | ++|+|.++|...
T Consensus 15 ~~l~~~~l~~~~~~~~----vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~sG~i~~~g~~~~~ 87 (265)
T PRK14252 15 QKSEVNKLNFYYGGYQ----ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHD---LYPGNHYEGEIILHPDNVNI 87 (265)
T ss_pred ceEEEEEEEEEECCee----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCCCcccEEEEcCccccc
Confidence 4699999999998766 9999999999999999999999999999999999986 5 799999987431
Q ss_pred ----------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCC-ccHHHHHHHHHHhhc------CCCccCCCCCc
Q 021380 149 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFDH 211 (313)
Q Consensus 149 ----------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~-~~~~~~~~~l~~l~~------~~~~~~~~LSg 211 (313)
...++|++|++..+ . .|+.+|+.+.....+.... ...+.+.++++.++. ..+..+..||+
T Consensus 88 ~~~~~~~~~~~~~i~~~~q~~~~~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~ 164 (265)
T PRK14252 88 LSPEVDPIEVRMRISMVFQKPNPF-P--KSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSG 164 (265)
T ss_pred cccccCHHHHhccEEEEccCCcCC-c--chHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCH
Confidence 23589999996433 2 4899999876543332211 123445566666653 23456779999
Q ss_pred cCCCcchhhhhcccCccEEEEcCcccccChhhH----HHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCCh
Q 021380 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKP 278 (313)
Q Consensus 212 GekqRv~la~al~~~a~~li~d~~~llLDE~~~----~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~ 278 (313)
||+||++||++++.+++++++|+|+..||.... +.|.++.. .+|++|||++++.. |++ |++++.|..
T Consensus 165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~ 244 (265)
T PRK14252 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGAT 244 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999444 44444332 25799999999875 554 888888887
Q ss_pred hHHH
Q 021380 279 PDVA 282 (313)
Q Consensus 279 ~e~~ 282 (313)
.++.
T Consensus 245 ~~~~ 248 (265)
T PRK14252 245 DTIF 248 (265)
T ss_pred HHHH
Confidence 7664
No 224
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=9.4e-33 Score=272.40 Aligned_cols=199 Identities=15% Similarity=0.153 Sum_probs=154.0
Q ss_pred CeEEEccceeEcc---ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-CCceeeeCCCCC---
Q 021380 76 PVVEARCMDEVYD---ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFDSQVKP--- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~---~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-~~G~i~~~~~~~--- 148 (313)
++|+++||++.|+ +.. +|+|+||+|++|+++||+||||||||||+|+|+|+++ | ++|+|.++|.+.
T Consensus 258 ~~l~~~~l~~~~~~~~~~~----vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~~~G~i~~~g~~~~~~ 330 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIK----RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYP---GRWEGEIFIDGKPVKIR 330 (506)
T ss_pred ceEEEecCccccccccccc----cccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCcEEEECCEECCCC
Confidence 4799999999994 334 8999999999999999999999999999999999997 6 899999988542
Q ss_pred ------CCeEEEEeccCC-CCCcccCCcccCHHHHHH--hcCC---CCCccHHHHHHHHHHhhcC---CCccCCCCCccC
Q 021380 149 ------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHA--RRGA---PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV 213 (313)
Q Consensus 149 ------~~~i~~v~q~~~-~~~~~~ltv~e~l~~~~~--~~~~---~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGe 213 (313)
...++|++|+.. ....+.+|+.+|+.+... ..+. ......+.+.++++.++.. .++++.+|||||
T Consensus 331 ~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~ 410 (506)
T PRK13549 331 NPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGN 410 (506)
T ss_pred CHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHH
Confidence 134899999852 112234899999876532 1110 1112334577888998853 467788999999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhcC---eEEEEcChHHHHH---HHH----hhhhccCChh
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~~---~i~vtHd~~~~~~---rvi----gr~v~~G~~~ 279 (313)
||||+||++++.++++|++|+|+..||... ++.|.++.+. +|++|||++++.. |++ |+++..|+++
T Consensus 411 kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~ 490 (506)
T PRK13549 411 QQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINH 490 (506)
T ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccc
Confidence 999999999999999999999999999943 3444444332 5799999999876 544 8888777766
Q ss_pred HH
Q 021380 280 DV 281 (313)
Q Consensus 280 e~ 281 (313)
++
T Consensus 491 ~~ 492 (506)
T PRK13549 491 NL 492 (506)
T ss_pred cC
Confidence 54
No 225
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.97 E-value=1.6e-32 Score=269.87 Aligned_cols=193 Identities=10% Similarity=-0.021 Sum_probs=150.7
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~----- 149 (313)
|.||+++|+++.|++.. +|+|+||+|.+|+++||+||||||||||+|+|+|+++ |++|+|.++|....
T Consensus 1 m~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~---p~~G~i~~~~~~~~~~~~~ 73 (490)
T PRK10938 1 MSSLQISQGTFRLSDTK----TLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP---LLSGERQSQFSHITRLSFE 73 (490)
T ss_pred CceEEEEeEEEEcCCee----ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCceEEECCcccccCCHH
Confidence 34799999999998766 9999999999999999999999999999999999999 99999998775421
Q ss_pred ---CeEEEEeccCCCC-Cc-----ccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcch
Q 021380 150 ---DVATVLPMDGFHL-YL-----SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 150 ---~~i~~v~q~~~~~-~~-----~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~ 218 (313)
+.++|++|+.... .. ..+++.+++.+. ....+++.++++.++. ..++++.+||||||||++
T Consensus 74 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 145 (490)
T PRK10938 74 QLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE--------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTL 145 (490)
T ss_pred HHHHHhceeccCcchhhcccchhhccccHHHhcccc--------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHH
Confidence 2488999974321 10 124555554321 1234567788888874 346788899999999999
Q ss_pred hhhhcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 219 DDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 219 la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
||++++.+++++++|+|+..||.. +.+.|.++.+ .+|++|||++.+.. +++ |+++..|.++++.
T Consensus 146 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 146 LCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999994 4444444432 24799999998876 444 8888888877654
No 226
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.8e-32 Score=253.75 Aligned_cols=203 Identities=12% Similarity=0.074 Sum_probs=155.6
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCceeeeCCCCC-----
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~--~p~~G~i~~~~~~~----- 148 (313)
.+|+++|+++.|.+.. ..+|+|+||+|++|+++||+|+||||||||+++|+|+.+.. .|++|+|.++|.+.
T Consensus 79 ~~i~~~nls~~y~~~~--~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 79 NVFEIRNFNFWYMNRT--KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred ceEEEEeeEEEecCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 4799999999995311 12899999999999999999999999999999999998510 04699999998753
Q ss_pred -----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCc-cHHHHHHHHHHhhc------CCCccCCCCCccCCCc
Q 021380 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF-NPLLLLNCLKNLRN------QGSVYAPSFDHGVGDP 216 (313)
Q Consensus 149 -----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~-~~~~~~~~l~~l~~------~~~~~~~~LSgGekqR 216 (313)
...++|++|++..+ . .|+++|+.+.....+..... ..+.+..+++.++. ..+.+...||||||||
T Consensus 157 ~~~~lr~~i~~v~q~~~~~-~--~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqR 233 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPF-E--MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQR 233 (329)
T ss_pred chHhhhccEEEEecCCccC-C--CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHH
Confidence 24599999997543 2 69999998764332222111 12234566666653 2346677999999999
Q ss_pred chhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 217 VEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 217 v~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++||+|++.++++|++|+|+..||... .+.|.++.+ .+|+|||+++++.. |++ |++++.|++.++..
T Consensus 234 l~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~ 313 (329)
T PRK14257 234 LCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFI 313 (329)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999944 344444443 25799999999876 555 99999999999864
No 227
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.97 E-value=2e-32 Score=243.72 Aligned_cols=184 Identities=16% Similarity=0.130 Sum_probs=144.9
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC----CCceeeeCCCCC------CCeEEEEeccCCCCCcc
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKASSFDSQVKP------PDVATVLPMDGFHLYLS 165 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p----~~G~i~~~~~~~------~~~i~~v~q~~~~~~~~ 165 (313)
+|+|+||+|++|++++|+||||||||||+++|+|+++ | ++|+|.++|.+. .+.++|++|++...+.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP---PGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CccCccccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 5789999999999999999999999999999999998 8 899999998652 24699999996322333
Q ss_pred cCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC-----CCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccC
Q 021380 166 QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240 (313)
Q Consensus 166 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLD 240 (313)
.+|+.+++.+.....+.......+++.++++.++.. .++.+..|||||+||++||++++.+++++++|+|+..||
T Consensus 78 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD 157 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLD 157 (230)
T ss_pred ccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 478888887654433322222345577888888754 356778999999999999999999999999999999999
Q ss_pred hh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 241 GG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 241 E~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
.. +.+.|.++.+ .+|++|||++++.. |++ |+++..|+++++.
T Consensus 158 ~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 158 VVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 83 4455555442 24799999998865 444 8888888877764
No 228
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=6e-32 Score=248.86 Aligned_cols=206 Identities=17% Similarity=0.183 Sum_probs=170.4
Q ss_pred CCeEEEccceeEccccc-------cccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC
Q 021380 75 IPVVEARCMDEVYDALA-------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~-------~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~ 147 (313)
-++|++++|.+.|.-+. ...+++++|||++.+|+.+||+|.+|||||||-..|.+++ +.+|+|.++|++
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~----~s~G~I~F~G~~ 349 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI----PSQGEIRFDGQD 349 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc----CcCceEEECCcc
Confidence 45899999999995321 2356899999999999999999999999999999999999 555999999976
Q ss_pred C-----------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcC--CCCCccHHHHHHHHHHhhcC---CCccCCCCCc
Q 021380 148 P-----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG--APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDH 211 (313)
Q Consensus 148 ~-----------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~--~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSg 211 (313)
. ++.+.+||||+|-..++.|||.+.+..+....+ ....+..+++.+.|+.+|.. .+++++++||
T Consensus 350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSG 429 (534)
T COG4172 350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSG 429 (534)
T ss_pred ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCc
Confidence 2 346899999999888888999999998887654 22344556788888998844 4678899999
Q ss_pred cCCCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccC
Q 021380 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTG 276 (313)
Q Consensus 212 GekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G 276 (313)
|||||++||+|++..++++++|+|+.-||- .+++.++++.++ -+|||||+..+.. +++ |++|+.|
T Consensus 430 GQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G 509 (534)
T COG4172 430 GQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQG 509 (534)
T ss_pred chhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeC
Confidence 999999999999999999999999999998 455555555443 2699999999887 555 9999999
Q ss_pred ChhHHHHH
Q 021380 277 KPPDVAKW 284 (313)
Q Consensus 277 ~~~e~~~~ 284 (313)
+.+++..+
T Consensus 510 ~~~~if~~ 517 (534)
T COG4172 510 PTEAVFAN 517 (534)
T ss_pred CHHHHhcC
Confidence 99988764
No 229
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.2e-32 Score=270.63 Aligned_cols=193 Identities=13% Similarity=0.096 Sum_probs=152.0
Q ss_pred EccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---------CC
Q 021380 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---------PD 150 (313)
Q Consensus 80 v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~---------~~ 150 (313)
++||++.|+++. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+. .+
T Consensus 1 ~~nl~~~~~~~~----il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~~ 73 (491)
T PRK10982 1 MSNISKSFPGVK----ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ---KDSGSILFQGKEIDFKSSKEALEN 73 (491)
T ss_pred CCceEEEeCCEE----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCEECCCCCHHHHHhC
Confidence 478999998766 9999999999999999999999999999999999999 9999999998642 24
Q ss_pred eEEEEeccCCCCCcccCCcccCHHHHHH-hcCC--CCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhccc
Q 021380 151 VATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGA--PWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 151 ~i~~v~q~~~~~~~~~ltv~e~l~~~~~-~~~~--~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
.++|++|+...++ .+|+.+|+.+... ..+. ......+++.++++.++. ..++++.+|||||||||+||++++.
T Consensus 74 ~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 74 GISMVHQELNLVL--QRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred CEEEEeccccccc--CCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHh
Confidence 5899999964333 4899999876532 1111 111123456778888874 3466788999999999999999999
Q ss_pred CccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHH
Q 021380 226 QHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 226 ~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~ 281 (313)
++++|++|+|+..||.. +++.|.++.+ .+|++|||++++.. |++ |+++..|++.++
T Consensus 152 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence 99999999999999994 4444444432 25799999998876 444 888888876664
No 230
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.97 E-value=2.6e-32 Score=274.93 Aligned_cols=194 Identities=14% Similarity=0.112 Sum_probs=157.1
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
-|+++||++.|+... ..+|+|+||+|++||++||+|+||||||||+|+|+|+++ |+.|+|.+||.+.
T Consensus 471 ~I~~~nvsf~y~~~~--~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~---p~~G~I~~dg~dl~~i~~~~l 545 (709)
T COG2274 471 EIEFENVSFRYGPDD--PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK---PQQGRILLDGVDLNDIDLASL 545 (709)
T ss_pred eEEEEEEEEEeCCCC--cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEeHHhcCHHHH
Confidence 599999999998752 139999999999999999999999999999999999999 9999999999873
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccC----CCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~LSgGekq 215 (313)
++.++|++||++.+. -|++||+.+. .|. .+.+.+.+.+...+ .+-+..+ ..|||||||
T Consensus 546 R~~ig~V~Q~~~Lf~---gSI~eNi~l~-----~p~-~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQ 616 (709)
T COG2274 546 RRQVGYVLQDPFLFS---GSIRENIALG-----NPE-ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQ 616 (709)
T ss_pred HhheeEEcccchhhc---CcHHHHHhcC-----CCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHH
Confidence 457999999976544 4999999875 222 22333444433333 2333333 389999999
Q ss_pred cchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhh--cCeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMF--DEKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~--~~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++|||++..+|++|++||++.-||+ .+.+.|.++. ...|+|+|.+..+.. |++ |+++++|+.+++..
T Consensus 617 rlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 617 RLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred HHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHH
Confidence 99999999999999999999999999 4555555665 446899999999988 665 99999999999876
Q ss_pred H
Q 021380 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 697 ~ 697 (709)
T COG2274 697 Q 697 (709)
T ss_pred h
Confidence 5
No 231
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.5e-32 Score=268.95 Aligned_cols=194 Identities=12% Similarity=0.051 Sum_probs=153.2
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEe
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~ 156 (313)
||+++|+++.|+++. +|+|+||+|.+|+++||+||||||||||+|+|+|+++ |++|+|.+++. ..++|++
T Consensus 1 ml~i~~ls~~~~~~~----il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~~---~~i~~~~ 70 (530)
T PRK15064 1 MLSTANITMQFGAKP----LFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE---PSAGNVSLDPN---ERLGKLR 70 (530)
T ss_pred CEEEEEEEEEeCCcE----eEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---CEEEEEe
Confidence 489999999998776 9999999999999999999999999999999999999 99999999874 3589999
Q ss_pred ccCCCCCcccCCcccCHHHHHH-h----------cCCCC---------------------CccHHHHHHHHHHhhcCC--
Q 021380 157 MDGFHLYLSQLDAMEDPKEAHA-R----------RGAPW---------------------TFNPLLLLNCLKNLRNQG-- 202 (313)
Q Consensus 157 q~~~~~~~~~ltv~e~l~~~~~-~----------~~~~~---------------------~~~~~~~~~~l~~l~~~~-- 202 (313)
|+...+ +.+|+.+++.+... . .+.+. .....++.++++.++...
T Consensus 71 q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 148 (530)
T PRK15064 71 QDQFAF--EEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQ 148 (530)
T ss_pred ccCCcC--CCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhH
Confidence 986433 34799999875421 0 01000 011245667888887532
Q ss_pred -CccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhc----CeEEEEcChHHHHH---HHH----h
Q 021380 203 -SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----K 270 (313)
Q Consensus 203 -~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----g 270 (313)
+.++.+||||||||++||++++.++++|++|+|+..||....+.+.+++. .+|+||||++.+.. |++ |
T Consensus 149 ~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g 228 (530)
T PRK15064 149 HYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYG 228 (530)
T ss_pred hcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCC
Confidence 35678999999999999999999999999999999999966666655543 25799999998876 554 7
Q ss_pred hhh-ccCChhHHH
Q 021380 271 RHI-STGKPPDVA 282 (313)
Q Consensus 271 r~v-~~G~~~e~~ 282 (313)
+++ ..|.+.++.
T Consensus 229 ~i~~~~g~~~~~~ 241 (530)
T PRK15064 229 ELRVYPGNYDEYM 241 (530)
T ss_pred EEEEecCCHHHHH
Confidence 773 678777654
No 232
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.9e-32 Score=276.52 Aligned_cols=194 Identities=13% Similarity=0.083 Sum_probs=151.2
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEE
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 153 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~ 153 (313)
+.++|+++||++.|+++. +|+|+||+|.+|+++||+||||||||||+|+|+|+++ |++|+|.+++. ..++
T Consensus 309 ~~~~l~~~~l~~~y~~~~----il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~~~~---~~ig 378 (638)
T PRK10636 309 PNPLLKMEKVSAGYGDRI----ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA---PVSGEIGLAKG---IKLG 378 (638)
T ss_pred CCceEEEEeeEEEeCCee----eeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCC---EEEE
Confidence 455899999999998876 9999999999999999999999999999999999999 99999998742 3589
Q ss_pred EEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhcccCccEE
Q 021380 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 154 ~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~a~~l 230 (313)
|++|+.........++.+++.. .........+.++|+.++.. .++++..|||||||||+||++++.++.+|
T Consensus 379 y~~Q~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lL 452 (638)
T PRK10636 379 YFAQHQLEFLRADESPLQHLAR------LAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLL 452 (638)
T ss_pred EecCcchhhCCccchHHHHHHH------hCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999742212222344443321 11122345677888888853 46788899999999999999999999999
Q ss_pred EEcCcccccChhhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhh-ccCChhHHHH
Q 021380 231 IVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHI-STGKPPDVAK 283 (313)
Q Consensus 231 i~d~~~llLDE~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v-~~G~~~e~~~ 283 (313)
++|+|+..||....+.+.+++. .+|+||||++++.. |++ |+++ ..|+..+...
T Consensus 453 lLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 453 LLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 9999999999955555554432 35799999999876 444 7776 6788777643
No 233
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.6e-32 Score=245.32 Aligned_cols=197 Identities=12% Similarity=0.079 Sum_probs=154.5
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCceeeeCCCCC--
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP-- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~i~~~~~~~-- 148 (313)
+.+.++++++.|++.. +|+++||+|++|+++||+|+||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 7 ~~~~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~~G~i~~~g~~i~~ 79 (261)
T PRK14263 7 IVMDCKLDKIFYGNFM----AVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMND---LVKGFRFEGHVHFLGQDVYG 79 (261)
T ss_pred ceEEEEeEEEEeCCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccc---cccCCCCceEEEECCEeccc
Confidence 4689999999998876 9999999999999999999999999999999999997 6 799999998642
Q ss_pred --------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC------CCccCCCCCccCC
Q 021380 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (313)
Q Consensus 149 --------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~------~~~~~~~LSgGek 214 (313)
.+.++|++|++.. + .+|+.+|+.+.....+.. ....+.+.++++.++.. .+.++..||+||+
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~-~--~~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~ 155 (261)
T PRK14263 80 KGVDPVVVRRYIGMVFQQPNP-F--SMSIFDNVAFGLRLNRYK-GDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQ 155 (261)
T ss_pred cccchHhhhhceEEEecCCcc-c--cccHHHHHHHHHhhcCch-HHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHH
Confidence 2358999999653 3 279999998765443221 12234567777777642 2345679999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc--CeEEEEcChHHHHH---HH--H----------hhhh
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RV--L----------KRHI 273 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv--i----------gr~v 273 (313)
||++||++++.+++++++|+|+..||. .+++.+.++.. .+|++|||++++.. |+ + |+++
T Consensus 156 qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~ 235 (261)
T PRK14263 156 QRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLV 235 (261)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEE
Confidence 999999999999999999999999999 44444444432 24799999998765 32 2 5777
Q ss_pred ccCChhHHHH
Q 021380 274 STGKPPDVAK 283 (313)
Q Consensus 274 ~~G~~~e~~~ 283 (313)
+.|+.+++..
T Consensus 236 ~~g~~~~~~~ 245 (261)
T PRK14263 236 EMGPTAQIFQ 245 (261)
T ss_pred EeCCHHHHHh
Confidence 7787777643
No 234
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=3.7e-32 Score=236.10 Aligned_cols=175 Identities=11% Similarity=0.047 Sum_probs=139.0
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC----CeE
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----DVA 152 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~----~~i 152 (313)
||+++|+++.|++.. +++ +||+|++|+++||+|+||||||||+++|+|+++ |++|+|.++|.+.. ..+
T Consensus 1 ~l~~~~l~~~~~~~~----l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~ 72 (195)
T PRK13541 1 MLSLHQLQFNIEQKN----LFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ---PSSGNIYYKNCNINNIAKPYC 72 (195)
T ss_pred CeEEEEeeEEECCcE----EEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCcccChhhhhhE
Confidence 488999999997654 555 999999999999999999999999999999999 99999999986532 347
Q ss_pred EEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEE
Q 021380 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 153 ~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~l 230 (313)
+|++|+...++ .+|+.+|+.+....++ ..+.+.++++.++. ..++++..||+||+||++++++++.+++++
T Consensus 73 ~~~~~~~~~~~--~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~l 145 (195)
T PRK13541 73 TYIGHNLGLKL--EMTVFENLKFWSEIYN-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLW 145 (195)
T ss_pred EeccCCcCCCc--cCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 88988753333 4799999987654332 23456677777763 346677899999999999999999999999
Q ss_pred EEcCcccccChhhHHHHHHhh----cC---eEEEEcChHHHHH
Q 021380 231 IVDGNYLFLDGGVWKDVSSMF----DE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 231 i~d~~~llLDE~~~~~l~~l~----~~---~i~vtHd~~~~~~ 266 (313)
++|+|+..||....+.+.+++ +. +|++|||.+.+..
T Consensus 146 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~ 188 (195)
T PRK13541 146 LLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKS 188 (195)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccch
Confidence 999999999985444444332 22 4799999987643
No 235
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.1e-32 Score=240.41 Aligned_cols=186 Identities=13% Similarity=0.113 Sum_probs=153.5
Q ss_pred cceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC------------CC
Q 021380 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------------PP 149 (313)
Q Consensus 82 ~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~------------~~ 149 (313)
|+.+.+|+. +| +++|.++..-++||-|+||||||||+|+|+|+++ |+.|.|.++|.. ..
T Consensus 5 ~~~~~lG~~-----~l-~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r---PdeG~I~lngr~L~Ds~k~i~lp~~~ 75 (352)
T COG4148 5 NFRQRLGNF-----AL-DANFTLPARGITALFGPSGSGKTSLINMIAGLTR---PDEGRIELNGRVLVDAEKGIFLPPEK 75 (352)
T ss_pred ehhhhcCce-----EE-EEeccCCCCceEEEecCCCCChhhHHHHHhccCC---ccccEEEECCEEeecccCCcccChhh
Confidence 455666654 33 6899998878999999999999999999999999 999999999853 24
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcccCc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~~a 227 (313)
+++||+|||...++ ++||+.|+.|+.... +...+..+...++ ...++++.+|||||||||+|++|+...+
T Consensus 76 RriGYVFQDARLFp--H~tVrgNL~YG~~~~------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P 147 (352)
T COG4148 76 RRIGYVFQDARLFP--HYTVRGNLRYGMWKS------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAP 147 (352)
T ss_pred heeeeEeecccccc--ceEEecchhhhhccc------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCC
Confidence 67999999965444 699999999875432 3455677777777 4567888899999999999999999999
Q ss_pred cEEEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 228 KVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 228 ~~li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
++|++|+|+.-||+ +++..++.+.++ ++||||.++++.+ +++ |++.+.|..+++...
T Consensus 148 ~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 148 ELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred CeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence 99999999999999 666666666665 4699999999988 665 899999998887543
No 236
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.97 E-value=1.2e-32 Score=244.20 Aligned_cols=176 Identities=13% Similarity=0.082 Sum_probs=137.9
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEec
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q 157 (313)
+.++++++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.. +...
T Consensus 23 l~~~~~~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~----~~~~ 91 (224)
T cd03220 23 LGILGRKGEVGEFW----ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP---PDSGTVTVRGRVSS----LLGL 91 (224)
T ss_pred hhhhhhhhhcCCeE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEch----hhcc
Confidence 78899999999887 9999999999999999999999999999999999999 99999999886421 1111
Q ss_pred cCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEEEEcCc
Q 021380 158 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 235 (313)
Q Consensus 158 ~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~ 235 (313)
. ..+ .+.+|+.+|+.+....++.......+++.++++.++. ..++.+..||||||||++||++++.+++++++|+|
T Consensus 92 ~-~~~-~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP 169 (224)
T cd03220 92 G-GGF-NPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEV 169 (224)
T ss_pred c-ccC-CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1 112 2347999999876554432222223345667777663 34667789999999999999999999999999999
Q ss_pred ccccChh----hHHHHHHhhcC---eEEEEcChHHHHH
Q 021380 236 YLFLDGG----VWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 236 ~llLDE~----~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
+..||.. +++.+.++... +|++|||++++..
T Consensus 170 ~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~ 207 (224)
T cd03220 170 LAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKR 207 (224)
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 9999984 45555554332 5799999998765
No 237
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=9.4e-33 Score=246.18 Aligned_cols=194 Identities=14% Similarity=0.128 Sum_probs=144.8
Q ss_pred EEEccceeEcccc--ccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 78 VEARCMDEVYDAL--AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~~--~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
|+++|+++.|++. . +|+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 i~~~~l~~~~~~~~~~----~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 73 (234)
T cd03251 1 VEFKNVTFRYPGDGPP----VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD---VDSGRILIDGHDVRDYTLAS 73 (234)
T ss_pred CEEEEEEEEeCCCCcc----ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCCCEEEECCEEhhhCCHHH
Confidence 4689999999764 4 8999999999999999999999999999999999999 9999999988542
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHH-----HHHHHHHHhh----cCCCccCCCCCccCCCcch
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPL-----LLLNCLKNLR----NQGSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~l~----~~~~~~~~~LSgGekqRv~ 218 (313)
.+.++|++|+... +. .|+.+|+.+....+ ....... .+.++++.+. ...+.++..||+||+||++
T Consensus 74 ~~~~i~~~~q~~~~-~~--~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 148 (234)
T cd03251 74 LRRQIGLVSQDVFL-FN--DTVAENIAYGRPGA--TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIA 148 (234)
T ss_pred HHhhEEEeCCCCee-cc--ccHHHHhhccCCCC--CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHH
Confidence 2358999999643 32 58999886642211 0000000 1223333331 1234567799999999999
Q ss_pred hhhhcccCccEEEEcCcccccChhh----HHHHHHhhcC--eEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 219 DDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 219 la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~~--~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
||++++.+++++++|+|+..||... .+.|.++.+. +|++|||++++.. +++ |+++..|+++++..
T Consensus 149 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 225 (234)
T cd03251 149 IARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLA 225 (234)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHH
Confidence 9999999999999999999999944 4444444322 4799999998865 443 77777777766643
No 238
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.1e-31 Score=248.70 Aligned_cols=201 Identities=13% Similarity=0.090 Sum_probs=153.9
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCceeeeCCCCC----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP---- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~--~p~~G~i~~~~~~~---- 148 (313)
.++|+++||++.|++.. +|+++||+|.+|++++|+|+||||||||+++|+|+++.. +|++|+|.++|.+.
T Consensus 43 ~~~l~i~nl~~~~~~~~----iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~ 118 (305)
T PRK14264 43 DAKLSVEDLDVYYGDDH----ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDG 118 (305)
T ss_pred CceEEEEEEEEEeCCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 34799999999998766 999999999999999999999999999999999998410 14899999988542
Q ss_pred ------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcC------------CCC-CccHHHHHHHHHHhhc------CCC
Q 021380 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG------------APW-TFNPLLLLNCLKNLRN------QGS 203 (313)
Q Consensus 149 ------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~------------~~~-~~~~~~~~~~l~~l~~------~~~ 203 (313)
.+.++|++|+... +. .|+.+|+.+.....+ ... ....+.+.++++.++. ..+
T Consensus 119 ~~~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 195 (305)
T PRK14264 119 VNLVELRKRVGMVFQSPNP-FP--KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLD 195 (305)
T ss_pred ccHHHHhhceEEEccCCcc-cc--ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhc
Confidence 2358999999643 32 599999987643211 110 1123446667777653 235
Q ss_pred ccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhcC--eEEEEcChHHHHH---HH-H----
Q 021380 204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDE--KWFIEVDLDTAMQ---RV-L---- 269 (313)
Q Consensus 204 ~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~~--~i~vtHd~~~~~~---rv-i---- 269 (313)
.++.+|||||+||++||++++.++++|++|+|+..||.. +++.|.++.+. +|++|||++.+.. |+ +
T Consensus 196 ~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~ 275 (305)
T PRK14264 196 DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTG 275 (305)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecC
Confidence 667899999999999999999999999999999999994 34444444332 5799999999766 53 2
Q ss_pred hhhhccCChhHHH
Q 021380 270 KRHISTGKPPDVA 282 (313)
Q Consensus 270 gr~v~~G~~~e~~ 282 (313)
|+++..|++.++.
T Consensus 276 G~i~~~g~~~~~~ 288 (305)
T PRK14264 276 GELVEYDDTDKIF 288 (305)
T ss_pred CEEEEeCCHHHHH
Confidence 7888888877664
No 239
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.97 E-value=5.9e-32 Score=254.98 Aligned_cols=183 Identities=15% Similarity=0.095 Sum_probs=152.3
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~----- 149 (313)
++.|++++++|.|++.. ++++|||+|.+|||.||+|.||||||||+++|.|+++ |++|+|.++|+...
T Consensus 2 ~~~l~~~~itK~f~~~~----And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~---P~~GeI~v~G~~v~~~sP~ 74 (501)
T COG3845 2 EPALEMRGITKRFPGVV----ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ---PDSGEIRVDGKEVRIKSPR 74 (501)
T ss_pred CceEEEeccEEEcCCEE----ecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc---CCcceEEECCEEeccCCHH
Confidence 45799999999999887 9999999999999999999999999999999999999 99999999997521
Q ss_pred ----CeEEEEeccCCCCCcccCCcccCHHHHHHhc---CCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhh
Q 021380 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARR---GAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 150 ----~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la 220 (313)
.-||+|+|+....+ .+||.||+.++.... ........+++.++.+.++ ...+.++.+||-||||||.|.
T Consensus 75 dA~~~GIGMVhQHF~Lv~--~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIl 152 (501)
T COG3845 75 DAIRLGIGMVHQHFMLVP--TLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEIL 152 (501)
T ss_pred HHHHcCCcEEeecccccc--ccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHH
Confidence 24899999944333 599999998875432 1122334556777778887 456778899999999999999
Q ss_pred hhcccCccEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHHH
Q 021380 221 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 221 ~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
.+|..++++|++|+|+..|-+ ++++.++.+... +|||||-++++.+
T Consensus 153 KaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~ 205 (501)
T COG3845 153 KALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMA 205 (501)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHH
Confidence 999999999999999999998 455555555543 5799999999988
No 240
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=3.3e-32 Score=241.90 Aligned_cols=189 Identities=17% Similarity=0.224 Sum_probs=141.9
Q ss_pred EEEccceeEccc-cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~-~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
|+++|+++.|++ .. +|+|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 l~~~~l~~~~~~~~~----~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 75 (229)
T cd03254 3 IEFENVNFSYDEKKP----VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD---PQKGQILIDGIDIRDISRKSL 75 (229)
T ss_pred EEEEEEEEecCCCCc----cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEeHHHcCHHHH
Confidence 789999999974 34 9999999999999999999999999999999999999 9999999998542
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh-------------cCCCccCCCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR-------------NQGSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~-------------~~~~~~~~~LSgGekq 215 (313)
.+.++|++|+... +. .|+.+|+.+.... .....+.+.++.++ ...+..+.+|||||+|
T Consensus 76 ~~~i~~~~q~~~~-~~--~tv~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~ 146 (229)
T cd03254 76 RSMIGVVLQDTFL-FS--GTIMENIRLGRPN------ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQ 146 (229)
T ss_pred hhhEEEecCCchh-hh--hHHHHHHhccCCC------CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHH
Confidence 2458999999643 32 4888887654211 11222333222221 1123456799999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~ 282 (313)
|++||++++.+++++++|+|+..||.. +.+.+.++.. .+|++|||++++.. +++ |+++..|+.+++.
T Consensus 147 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 225 (229)
T cd03254 147 LLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELL 225 (229)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999999999999984 4444444432 25799999998754 333 7777767665553
No 241
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.97 E-value=5e-32 Score=294.75 Aligned_cols=201 Identities=16% Similarity=0.191 Sum_probs=166.9
Q ss_pred CCeEEEccceeEcc--ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC----
Q 021380 75 IPVVEARCMDEVYD--ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~--~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~---- 148 (313)
...|+++||+|.|+ ++. +|+|+||++.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 926 ~~~L~I~nLsK~y~~~~k~----aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~---PtsG~I~i~G~dI~~~~ 998 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGRP----AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP---PTSGTVLVGGKDIETNL 998 (2272)
T ss_pred CceEEEEeEEEEecCCCce----EEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC---CCceEEEECCEECcchH
Confidence 35799999999995 344 9999999999999999999999999999999999999 9999999998653
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhc
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al 223 (313)
++.+||++|++..++ .+|+.||+.+....++.+.....+++.++++.++. ..++++.+||||||||++||+|+
T Consensus 999 ~~~r~~IG~~pQ~~~L~~--~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArAL 1076 (2272)
T TIGR01257 999 DAVRQSLGMCPQHNILFH--HLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAF 1076 (2272)
T ss_pred HHHhhcEEEEecCCcCCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 245899999965333 58999999988776665443344567888888884 34677889999999999999999
Q ss_pred ccCccEEEEcCcccccCh----hhHHHHHHhhcC--eEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
+.+++++++|||+..||+ .+++.|+++.+. +|++|||++++.. |++ |+++..|++.++...
T Consensus 1077 i~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1077 VGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999 455555555332 4799999999876 554 888889988887654
No 242
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.97 E-value=4e-32 Score=239.95 Aligned_cols=171 Identities=12% Similarity=0.082 Sum_probs=132.9
Q ss_pred EEEccceeEccc--cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 78 VEARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~--~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
|+++|+++.|++ .. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 l~~~~l~~~~~~~~~~----~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~ 75 (220)
T cd03245 3 IEFRNVSFSYPNQEIP----ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK---PTSGSVLLDGTDIRQLDPAD 75 (220)
T ss_pred EEEEEEEEEcCCCCcc----cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCeEEECCEEhHHCCHHH
Confidence 789999999975 34 8999999999999999999999999999999999999 9999999998642
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CC-----------ccCCCCCccCC
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GS-----------VYAPSFDHGVG 214 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~-----------~~~~~LSgGek 214 (313)
.+.++|++|+... +. .|+.+|+.+... ......+.++++.++.. .+ ..+.+|||||+
T Consensus 76 ~~~~i~~~~q~~~~-~~--~tv~e~l~~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~ 146 (220)
T cd03245 76 LRRNIGYVPQDVTL-FY--GTLRDNITLGAP------LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQR 146 (220)
T ss_pred HHhhEEEeCCCCcc-cc--chHHHHhhcCCC------CCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHH
Confidence 2358999999643 32 588888765311 11223445555555421 11 13469999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTA 264 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~ 264 (313)
||++||++++.+++++++|+|+..||.. +++.|.++.. .+|++|||++..
T Consensus 147 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~ 202 (220)
T cd03245 147 QAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL 202 (220)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence 9999999999999999999999999994 4444444433 257999999875
No 243
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.97 E-value=8.3e-32 Score=242.75 Aligned_cols=195 Identities=16% Similarity=0.095 Sum_probs=147.9
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHH--hcccCCCCceeeeCCCCCC----
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKASSFDSQVKPP---- 149 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gl--l~~~~p~~G~i~~~~~~~~---- 149 (313)
++|+++||++.|++.. +|+++||+|++|+++||+|+||||||||+++|+|+ ++ |++|+|.++|.+..
T Consensus 6 ~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~---~~~G~i~~~g~~~~~~~~ 78 (252)
T CHL00131 6 PILEIKNLHASVNENE----ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYK---ILEGDILFKGESILDLEP 78 (252)
T ss_pred ceEEEEeEEEEeCCEE----eeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCc---CCCceEEECCEEcccCCh
Confidence 4799999999998766 99999999999999999999999999999999998 56 99999999885421
Q ss_pred ----C-eEEEEeccCCCCCcccCCcccCHHHHHHhc----CCCC-C--ccHHHHHHHHHHhhcC---CCccCC-CCCccC
Q 021380 150 ----D-VATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPW-T--FNPLLLLNCLKNLRNQ---GSVYAP-SFDHGV 213 (313)
Q Consensus 150 ----~-~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~----~~~~-~--~~~~~~~~~l~~l~~~---~~~~~~-~LSgGe 213 (313)
+ .++|++|++..+. .+++.+++.+..... +... . ...+++.++++.++.. .+..+. .|||||
T Consensus 79 ~~~~~~~~~~~~q~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~ 156 (252)
T CHL00131 79 EERAHLGIFLAFQYPIEIP--GVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGE 156 (252)
T ss_pred hhhheeeEEEEeccccccc--cccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHH
Confidence 1 3678899854332 467888876543211 1111 0 1123456777877743 355666 599999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH----HHH----hhhhccCCh
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ----RVL----KRHISTGKP 278 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~----rvi----gr~v~~G~~ 278 (313)
+||++||++++.+++++++|+|+..||.. +++.|.++.+ .+|++|||++++.. +++ |++++.|++
T Consensus 157 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~ 236 (252)
T CHL00131 157 KKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDA 236 (252)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecCh
Confidence 99999999999999999999999999994 4444444432 24799999997753 333 788888877
Q ss_pred h
Q 021380 279 P 279 (313)
Q Consensus 279 ~ 279 (313)
+
T Consensus 237 ~ 237 (252)
T CHL00131 237 E 237 (252)
T ss_pred h
Confidence 6
No 244
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=1.7e-31 Score=265.93 Aligned_cols=193 Identities=16% Similarity=0.024 Sum_probs=149.8
Q ss_pred eEEEccceeEcc-ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEE
Q 021380 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 77 ~l~v~~ls~~y~-~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v 155 (313)
||+++||++.|+ ++. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++. ..++|+
T Consensus 4 ~i~~~nls~~~~~~~~----il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~---~~i~~v 73 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKE----ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFNGEARPAPG---IKVGYL 73 (552)
T ss_pred EEEEeeEEEecCCCCe----eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---CEEEEE
Confidence 799999999997 555 9999999999999999999999999999999999999 99999998752 459999
Q ss_pred eccCCCCCcccCCcccCHHHHHHh--------------cCCCCCc----------------------cHHHHHHHHHHhh
Q 021380 156 PMDGFHLYLSQLDAMEDPKEAHAR--------------RGAPWTF----------------------NPLLLLNCLKNLR 199 (313)
Q Consensus 156 ~q~~~~~~~~~ltv~e~l~~~~~~--------------~~~~~~~----------------------~~~~~~~~l~~l~ 199 (313)
+|++..++ .+|+.+|+.+.... ...+... ...++.++++.++
T Consensus 74 ~Q~~~~~~--~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 151 (552)
T TIGR03719 74 PQEPQLDP--TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALR 151 (552)
T ss_pred eccCCCCC--CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCC
Confidence 99964332 48999998864211 0111110 0123445566665
Q ss_pred c-CCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhc----CeEEEEcChHHHHH---HHH--
Q 021380 200 N-QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL-- 269 (313)
Q Consensus 200 ~-~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi-- 269 (313)
. ..+.++.+||||||||++||++++.++++|++|+|+..||....+.+.+++. .+|+||||++.+.. +++
T Consensus 152 l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l 231 (552)
T TIGR03719 152 CPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILEL 231 (552)
T ss_pred CCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEE
Confidence 4 2466788999999999999999999999999999999999955555554433 36799999998876 444
Q ss_pred --hhhh-ccCChhHH
Q 021380 270 --KRHI-STGKPPDV 281 (313)
Q Consensus 270 --gr~v-~~G~~~e~ 281 (313)
|+++ ..|...++
T Consensus 232 ~~g~i~~~~g~~~~~ 246 (552)
T TIGR03719 232 DRGRGIPWEGNYSSW 246 (552)
T ss_pred ECCEEEEecCCHHHH
Confidence 7755 56776654
No 245
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=9.2e-32 Score=271.68 Aligned_cols=180 Identities=14% Similarity=0.121 Sum_probs=145.0
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEE
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 153 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~ 153 (313)
+..+|+++||++.|+++. +|+|+||+|.+|+++||+||||||||||+|+|+|+++ |++|+|.++.. -.++
T Consensus 316 ~~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~~~~---~~i~ 385 (635)
T PRK11147 316 GKIVFEMENVNYQIDGKQ----LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ---ADSGRIHCGTK---LEVA 385 (635)
T ss_pred CCceEEEeeeEEEECCeE----EEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCC---cEEE
Confidence 345899999999998876 9999999999999999999999999999999999999 99999998432 2589
Q ss_pred EEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhcccCccEE
Q 021380 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 154 ~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~a~~l 230 (313)
|++|+...++ +.+|+.+++.+....... ......+.++++.++.. .++++.+|||||||||+||++++.++.+|
T Consensus 386 y~~q~~~~l~-~~~tv~e~l~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lL 462 (635)
T PRK11147 386 YFDQHRAELD-PEKTVMDNLAEGKQEVMV--NGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLL 462 (635)
T ss_pred EEeCcccccC-CCCCHHHHHHhhcccccc--cchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999743233 358999998764321110 11134567788887742 46788899999999999999999999999
Q ss_pred EEcCcccccChhhHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 231 IVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 231 i~d~~~llLDE~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
++|+|+..||....+.+.+++. .+|+||||.+++..
T Consensus 463 lLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~ 502 (635)
T PRK11147 463 ILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDN 502 (635)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence 9999999999966666665543 25799999998865
No 246
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.97 E-value=1.5e-31 Score=242.70 Aligned_cols=198 Identities=14% Similarity=0.165 Sum_probs=149.2
Q ss_pred eEEEccceeEcccc----------------ccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCce
Q 021380 77 VVEARCMDEVYDAL----------------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (313)
Q Consensus 77 ~l~v~~ls~~y~~~----------------~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~ 140 (313)
-|+++||+|.|... .....+|+++||+|.+|+++||+||||||||||+++|+|+++ |++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~---p~~G~ 80 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS---PTVGK 80 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceE
Confidence 37788888888542 123448999999999999999999999999999999999999 99999
Q ss_pred eeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcch
Q 021380 141 SFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 141 i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~ 218 (313)
|.++|. +++++|..... +.+|+.+|+.+.....+.........+..+++.++ ...+.++.+||+||+||++
T Consensus 81 I~~~g~-----~~~~~~~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~ 153 (264)
T PRK13546 81 VDRNGE-----VSVIAISAGLS--GQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLG 153 (264)
T ss_pred EEECCE-----EeEEecccCCC--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHH
Confidence 999874 45666664322 34799999876544433322222223445566555 3345677899999999999
Q ss_pred hhhhcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 219 DDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 219 la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
||++++.+++++++|+|+..||.. +++.+.++.. .+|++|||++++.. +++ |+++..|+.+++...
T Consensus 154 Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (264)
T PRK13546 154 FSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPK 233 (264)
T ss_pred HHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHHH
Confidence 999999999999999999999984 4444444432 25799999998765 444 888888988777654
No 247
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.97 E-value=8.1e-32 Score=245.60 Aligned_cols=188 Identities=16% Similarity=0.179 Sum_probs=147.4
Q ss_pred EEEccceeEcc--ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 78 VEARCMDEVYD--ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 78 l~v~~ls~~y~--~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
|+++||++.|. +.. +|+|+||+|++|+++||+|+||||||||+++|+|++ +++|+|.++|.+.
T Consensus 3 i~~~nls~~~~~~~~~----~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~----~~~G~I~i~g~~i~~~~~~~ 74 (275)
T cd03289 3 MTVKDLTAKYTEGGNA----VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL----NTEGDIQIDGVSWNSVPLQK 74 (275)
T ss_pred EEEEEEEEEeCCCCCc----ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc----CCCcEEEECCEEhhhCCHHH
Confidence 78999999994 344 899999999999999999999999999999999999 5689999999652
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCC-----------CCCccCC
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAP-----------SFDHGVG 214 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~-----------~LSgGek 214 (313)
.+.++|++|++..+ . .|+++|+... + ....+.+.+.++.++.. .+..+. .||+||+
T Consensus 75 lr~~i~~v~q~~~lf-~--~tv~~nl~~~----~---~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~ 144 (275)
T cd03289 75 WRKAFGVIPQKVFIF-S--GTFRKNLDPY----G---KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHK 144 (275)
T ss_pred HhhhEEEECCCcccc-h--hhHHHHhhhc----c---CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHH
Confidence 24699999996543 2 4899988532 1 12234566667766632 222232 4999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChhhH----HHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~~~----~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~ 282 (313)
||++||++++.+++++++|+|+..||.... +.|.+... .+|+|||+++.+.. |++ |++++.|.++++.
T Consensus 145 qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~ 224 (275)
T cd03289 145 QLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLL 224 (275)
T ss_pred HHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHh
Confidence 999999999999999999999999999444 44443332 24799999998866 554 8999999999986
Q ss_pred H
Q 021380 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 225 ~ 225 (275)
T cd03289 225 N 225 (275)
T ss_pred h
Confidence 6
No 248
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.97 E-value=7.4e-32 Score=240.13 Aligned_cols=179 Identities=16% Similarity=0.167 Sum_probs=137.9
Q ss_pred ccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC---CeEEEEeccCCCCCcccCCcccCH
Q 021380 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---DVATVLPMDGFHLYLSQLDAMEDP 173 (313)
Q Consensus 97 L~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~---~~i~~v~q~~~~~~~~~ltv~e~l 173 (313)
|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.. ...+|++|+...++ .+|+.+|+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~--~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ---PTSGGVILEGKQITEPGPDRMVVFQNYSLLP--WLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChhheEEecCcccCC--CCCHHHHH
Confidence 578999999999999999999999999999999999 99999999986432 23589999865333 47999999
Q ss_pred HHHHHh--cCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccCh----hhHH
Q 021380 174 KEAHAR--RGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWK 245 (313)
Q Consensus 174 ~~~~~~--~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE----~~~~ 245 (313)
.+.... .+.......+.+.++++.++. ..++++.+||||||||++||++++.+++++++|+|+..||. .+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~ 155 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQE 155 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHH
Confidence 875321 111112223456778888774 34567789999999999999999999999999999999999 3444
Q ss_pred HHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhH
Q 021380 246 DVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 246 ~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e 280 (313)
.|.++.+ .+|++|||++++.. |++ |+++..|...+
T Consensus 156 ~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 201 (230)
T TIGR01184 156 ELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILE 201 (230)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCcee
Confidence 4544432 24799999998765 444 77777775443
No 249
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6e-32 Score=266.91 Aligned_cols=193 Identities=13% Similarity=0.059 Sum_probs=148.5
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
++|+++|+++.|+ . +|+|+||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 264 ~~l~~~~l~~~~~--~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~~~~~~~~~ 334 (510)
T PRK09700 264 TVFEVRNVTSRDR--K----KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK---RAGGEIRLNGKDISPRSPLD 334 (510)
T ss_pred cEEEEeCccccCC--C----cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCEECCCCCHHH
Confidence 4799999999763 3 8999999999999999999999999999999999999 9999999988542
Q ss_pred --CCeEEEEeccC--CCCCcccCCcccCHHHHHHhc--------CC-CCCccHHHHHHHHHHhhcC---CCccCCCCCcc
Q 021380 149 --PDVATVLPMDG--FHLYLSQLDAMEDPKEAHARR--------GA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHG 212 (313)
Q Consensus 149 --~~~i~~v~q~~--~~~~~~~ltv~e~l~~~~~~~--------~~-~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG 212 (313)
.+.++|++|+. ..++ +.+|+.+|+.+....+ +. ........+.++++.++.. .++++.+||||
T Consensus 335 ~~~~~i~~v~q~~~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 413 (510)
T PRK09700 335 AVKKGMAYITESRRDNGFF-PNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGG 413 (510)
T ss_pred HHHCCcEEccCccccCCCc-CCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChH
Confidence 13589999983 2222 3589999987643211 11 1111234567888888853 46778899999
Q ss_pred CCCcchhhhhcccCccEEEEcCcccccChhhH----HHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCCh
Q 021380 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKP 278 (313)
Q Consensus 213 ekqRv~la~al~~~a~~li~d~~~llLDE~~~----~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~ 278 (313)
|||||+||++++.++++|++|||+..||.... +.|.++.+ .+|++|||++++.. |++ |+++..+..
T Consensus 414 q~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 414 NQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 99999999999999999999999999999444 44443322 25799999998876 444 676665543
No 250
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.97 E-value=3.1e-32 Score=243.56 Aligned_cols=197 Identities=13% Similarity=0.113 Sum_probs=142.6
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------C
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------P 149 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--------~ 149 (313)
|+++|+++.|++.. ...+|+|+||++++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 1 l~i~~l~~~~~~~~-~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 76 (238)
T cd03249 1 IEFKNVSFRYPSRP-DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD---PTSGEILLDGVDIRDLNLRWLR 76 (238)
T ss_pred CeEEEEEEecCCCC-CccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC---CCCCEEEECCEehhhcCHHHHH
Confidence 46899999997421 1128999999999999999999999999999999999999 9999999998542 2
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHH-----HHHHHHHHhh----cCCCccCCCCCccCCCcchhh
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPL-----LLLNCLKNLR----NQGSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~l~----~~~~~~~~~LSgGekqRv~la 220 (313)
+.++|++|++.. +. .|+.+|+.+...... ...... .+.+++..+. ...+..+.+|||||+||++||
T Consensus 77 ~~i~~~~q~~~~-~~--~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 151 (238)
T cd03249 77 SQIGLVSQEPVL-FD--GTIAENIRYGKPDAT--DEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIA 151 (238)
T ss_pred hhEEEECCchhh-hh--hhHHHHhhccCCCCC--HHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHH
Confidence 359999999643 32 588888865421110 000000 0112222221 123456679999999999999
Q ss_pred hhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 221 ILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 221 ~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
++++.+++++++|+|+..||.. +++.|.++.. .+|++|||++++.. +++ |++++.|+.+++..
T Consensus 152 ~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 152 RALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA 226 (238)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhh
Confidence 9999999999999999999984 4444444432 24799999998754 443 78777777666543
No 251
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=2e-31 Score=233.52 Aligned_cols=170 Identities=16% Similarity=0.156 Sum_probs=134.4
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
.|+++|+++.|++.. ..+|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 6 EIEVENLSVRYAPDL--PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE---AEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred eEEEEEEEEEeCCCC--cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEhHHCCHHHH
Confidence 589999999997521 128999999999999999999999999999999999999 9999999998642
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCcc
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~ 228 (313)
.+.++|++|++. ++. .|+.+|+.+.. ......+.+.++ .+.++..|||||+||++||++++.+++
T Consensus 81 ~~~i~~v~q~~~-~~~--~tv~~~l~~~~-------~~~~~~~~~~l~-----~~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 81 RSSLTIIPQDPT-LFS--GTIRSNLDPFD-------EYSDEEIYGALR-----VSEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred HhhEEEEecCCc-ccC--ccHHHHhcccC-------CCCHHHHHHHhh-----ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 246999999964 332 58998885421 112233444443 356778999999999999999999999
Q ss_pred EEEEcCcccccChhhH----HHHHHhhc--CeEEEEcChHHHHH
Q 021380 229 VVIVDGNYLFLDGGVW----KDVSSMFD--EKWFIEVDLDTAMQ 266 (313)
Q Consensus 229 ~li~d~~~llLDE~~~----~~l~~l~~--~~i~vtHd~~~~~~ 266 (313)
++++|+|+..||.... +.|.++.. .+|++|||++++..
T Consensus 146 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~ 189 (207)
T cd03369 146 VLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID 189 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 9999999999999444 44444432 24799999998754
No 252
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=8.7e-32 Score=237.94 Aligned_cols=174 Identities=16% Similarity=0.155 Sum_probs=134.1
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------C
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------P 149 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--------~ 149 (313)
|+++|+++.|++.. ..+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 3 l~~~~l~~~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 77 (221)
T cd03244 3 IEFKNVSLRYRPNL--PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE---LSSGSILIDGVDISKIGLHDLR 77 (221)
T ss_pred EEEEEEEEecCCCC--cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhHhCCHHHHh
Confidence 78999999997421 129999999999999999999999999999999999999 9999999998542 3
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc-------------CCCccCCCCCccCCCc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-------------QGSVYAPSFDHGVGDP 216 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~-------------~~~~~~~~LSgGekqR 216 (313)
+.++|++|++. ++. .|+.+|+.+.. ......+.+.++.++. ..+.++..||+||+||
T Consensus 78 ~~i~~~~q~~~-l~~--~tv~enl~~~~-------~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr 147 (221)
T cd03244 78 SRISIIPQDPV-LFS--GTIRSNLDPFG-------EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQL 147 (221)
T ss_pred hhEEEECCCCc-ccc--chHHHHhCcCC-------CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHH
Confidence 45899999965 332 58888875321 1122334444444431 1134677999999999
Q ss_pred chhhhhcccCccEEEEcCcccccChhhH----HHHHHhhc--CeEEEEcChHHHHH
Q 021380 217 VEDDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD--EKWFIEVDLDTAMQ 266 (313)
Q Consensus 217 v~la~al~~~a~~li~d~~~llLDE~~~----~~l~~l~~--~~i~vtHd~~~~~~ 266 (313)
++||++++.+++++++|+|+..||.... +.|.++.. .+|++|||++++..
T Consensus 148 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 203 (221)
T cd03244 148 LCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID 203 (221)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 9999999999999999999999999444 44444322 24799999998765
No 253
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.97 E-value=2.8e-31 Score=238.64 Aligned_cols=195 Identities=15% Similarity=0.028 Sum_probs=141.2
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCCceeeeCCCCCC-----
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll--~~~~p~~G~i~~~~~~~~----- 149 (313)
||+++||++.|+++. +|+++||+|++|++++|+|+||||||||+++|+|++ + |++|+|.++|.+..
T Consensus 1 ~i~~~nl~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~g~~~~~~~~~ 73 (248)
T PRK09580 1 MLSIKDLHVSVEDKA----ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYE---VTGGTVEFKGKDLLELSPE 73 (248)
T ss_pred CeEEEEEEEEeCCee----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCC---CCceEEEECCCccccCCHH
Confidence 488999999998766 999999999999999999999999999999999994 6 99999999986531
Q ss_pred ----CeEEEEeccCCCCCcccCCcccCHHHHHHh---cCCCCCc----cHHHHHHHHHHhhcC---CCccCC-CCCccCC
Q 021380 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHAR---RGAPWTF----NPLLLLNCLKNLRNQ---GSVYAP-SFDHGVG 214 (313)
Q Consensus 150 ----~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~---~~~~~~~----~~~~~~~~l~~l~~~---~~~~~~-~LSgGek 214 (313)
..++|++|+...++ .++..+++...... ....... ..+.+.+.++.++.. .++.+. .|||||+
T Consensus 74 ~~~~~~i~~~~q~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~ 151 (248)
T PRK09580 74 DRAGEGIFMAFQYPVEIP--GVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEK 151 (248)
T ss_pred HHhhcceEEEecCchhcc--chhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHH
Confidence 34889999864332 23433333221110 0000001 123445666666642 334454 7999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChhhHHHH----HHhhc---CeEEEEcChHHHHH----HHH----hhhhccCChh
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV----SSMFD---EKWFIEVDLDTAMQ----RVL----KRHISTGKPP 279 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~~~~~l----~~l~~---~~i~vtHd~~~~~~----rvi----gr~v~~G~~~ 279 (313)
||++||++++.+++++++|+|+..||....+.+ .++.+ .+|++|||++.+.. +++ |+++..|+++
T Consensus 152 qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~ 231 (248)
T PRK09580 152 KRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 231 (248)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHH
Confidence 999999999999999999999999999444433 33332 24799999988764 232 7777778766
Q ss_pred H
Q 021380 280 D 280 (313)
Q Consensus 280 e 280 (313)
.
T Consensus 232 ~ 232 (248)
T PRK09580 232 L 232 (248)
T ss_pred H
Confidence 3
No 254
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=3e-31 Score=264.17 Aligned_cols=197 Identities=15% Similarity=0.059 Sum_probs=152.4
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEE
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~ 154 (313)
.++|+++|+++.|+++. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++|+|.+++. ..++|
T Consensus 320 ~~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~~~---~~i~~ 389 (552)
T TIGR03719 320 DKVIEAENLSKGFGDKL----LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ---PDSGTIKIGET---VKLAY 389 (552)
T ss_pred CeEEEEeeEEEEECCee----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEECCc---eEEEE
Confidence 45899999999998776 9999999999999999999999999999999999999 99999998542 25899
Q ss_pred EeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhcccCccEEE
Q 021380 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 155 v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~a~~li 231 (313)
++|+...++ +.+|+.+++.+.....+... ......++++.++.. .++++.+||||||||++||++++.++++++
T Consensus 390 v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lll 466 (552)
T TIGR03719 390 VDQSRDALD-PNKTVWEEISGGLDIIQLGK--REVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLL 466 (552)
T ss_pred EeCCccccC-CCCcHHHHHHhhccccccCc--chHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEE
Confidence 999853222 35899999887543222211 123355778888753 367788999999999999999999999999
Q ss_pred EcCcccccChhhHHHHHHhh----cCeEEEEcChHHHHH---HHH-----hhhh-ccCChhHHHHH
Q 021380 232 VDGNYLFLDGGVWKDVSSMF----DEKWFIEVDLDTAMQ---RVL-----KRHI-STGKPPDVAKW 284 (313)
Q Consensus 232 ~d~~~llLDE~~~~~l~~l~----~~~i~vtHd~~~~~~---rvi-----gr~v-~~G~~~e~~~~ 284 (313)
+|+|+..||....+.+.+++ ..+|+||||++++.. |++ |+++ ..|...+....
T Consensus 467 LDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~~ 532 (552)
T TIGR03719 467 LDEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEED 532 (552)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHHH
Confidence 99999999995544444443 336799999998876 443 2443 34665544433
No 255
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.97 E-value=2.4e-31 Score=236.08 Aligned_cols=188 Identities=14% Similarity=0.070 Sum_probs=140.5
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----CCe
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PDV 151 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-----~~~ 151 (313)
++.++||++.|++......+|+|+||+|++|++++|+||||||||||+++|+|+++..-|++|+|.++|.+. .+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 578999999996531012399999999999999999999999999999999999841114899999988643 356
Q ss_pred EEEEeccCCCCCcccCCcccCHHHHHHhcCCC---CCccHHHHHH-HHHHhhc--CCCccCCCCCccCCCcchhhhhccc
Q 021380 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP---WTFNPLLLLN-CLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 152 i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~---~~~~~~~~~~-~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
++|++|+...++ .+|+.+|+.+........ .......+.+ .++.++. ..++.+..||+||+||+++|++++.
T Consensus 83 i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 160 (226)
T cd03234 83 VAYVRQDDILLP--GLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLW 160 (226)
T ss_pred EEEeCCCCccCc--CCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHh
Confidence 899999964433 479999998765433211 1111123334 6777663 2456778999999999999999999
Q ss_pred CccEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcCh-HHHHH
Q 021380 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDL-DTAMQ 266 (313)
Q Consensus 226 ~a~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~-~~~~~ 266 (313)
+++++++|+|+..||. .+++.+.++.+ .+|++||+. +++..
T Consensus 161 ~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~ 209 (226)
T cd03234 161 DPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFR 209 (226)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHH
Confidence 9999999999999999 44444444432 247999998 45554
No 256
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.97 E-value=1.8e-31 Score=258.37 Aligned_cols=198 Identities=15% Similarity=0.130 Sum_probs=150.9
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEE
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v 155 (313)
++++++||++.|++.. ...+|+++||+|.+|+++||+||||||||||+++|+|+++ |++|+|.++|... ++
T Consensus 20 ~mL~lknL~~~~~~~~-~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~---P~sGeI~I~G~~~-----~i 90 (549)
T PRK13545 20 PFDKLKDLFFRSKDGE-YHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM---PNKGTVDIKGSAA-----LI 90 (549)
T ss_pred ceeEEEEEEEecCCCc-cceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCceEEEECCEee-----eE
Confidence 4799999999997631 1238999999999999999999999999999999999999 9999999988542 22
Q ss_pred eccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEEEEc
Q 021380 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (313)
Q Consensus 156 ~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~li~d 233 (313)
.+... + .+.+|+.+|+.+.....+.......+.+.++++.++. ..++++..||||||||++||++++.++++|++|
T Consensus 91 ~~~~~-l-~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLD 168 (549)
T PRK13545 91 AISSG-L-NGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVID 168 (549)
T ss_pred Eeccc-c-CCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 22222 1 2247999998875443333222223345567777774 346778899999999999999999999999999
Q ss_pred CcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 234 GNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 234 ~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
+|+..||.. +++.|.++.+ .+|++|||++++.. +++ |+++..|.++++...
T Consensus 169 EPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 169 EALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 999999994 4444444432 24799999998866 444 888888988877643
No 257
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.97 E-value=7.4e-32 Score=230.89 Aligned_cols=147 Identities=16% Similarity=0.152 Sum_probs=122.3
Q ss_pred EEEccceeEcccc--ccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 78 VEARCMDEVYDAL--AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~~--~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
|+++|+++.|++. . +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 i~~~~~~~~~~~~~~~----~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 73 (178)
T cd03247 1 LSINNVSFSYPEQEQQ----VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGVPVSDLEKAL 73 (178)
T ss_pred CEEEEEEEEeCCCCcc----ceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCEEHHHHHHHH
Confidence 4689999999764 4 8999999999999999999999999999999999999 9999999998642
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCcc
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~ 228 (313)
.+.++|++|++.. +. .|+.+|+ +..||+||+||++||++++.+++
T Consensus 74 ~~~i~~~~q~~~~-~~--~tv~~~i--------------------------------~~~LS~G~~qrv~laral~~~p~ 118 (178)
T cd03247 74 SSLISVLNQRPYL-FD--TTLRNNL--------------------------------GRRFSGGERQRLALARILLQDAP 118 (178)
T ss_pred HhhEEEEccCCee-ec--ccHHHhh--------------------------------cccCCHHHHHHHHHHHHHhcCCC
Confidence 2458999998542 22 4666654 66999999999999999999999
Q ss_pred EEEEcCcccccChhhH----HHHHHhhc--CeEEEEcChHHHHH
Q 021380 229 VVIVDGNYLFLDGGVW----KDVSSMFD--EKWFIEVDLDTAMQ 266 (313)
Q Consensus 229 ~li~d~~~llLDE~~~----~~l~~l~~--~~i~vtHd~~~~~~ 266 (313)
++++|+|+..||.... +.|.++.. .+|++|||.+++..
T Consensus 119 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 162 (178)
T cd03247 119 IVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH 162 (178)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh
Confidence 9999999999998444 44444322 24799999998753
No 258
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.97 E-value=8.8e-32 Score=238.80 Aligned_cols=184 Identities=14% Similarity=0.088 Sum_probs=138.1
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
-++|+++|+++.|++.. ...+|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 9 ~~~l~~~~l~~~~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~ 84 (226)
T cd03248 9 KGIVKFQNVTFAYPTRP-DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ---PQGGQVLLDGKPISQYEHK 84 (226)
T ss_pred CceEEEEEEEEEeCCCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCcEEEECCCchHHcCHH
Confidence 34799999999997521 1128999999999999999999999999999999999999 9999999998652
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC---CccHHHHHHHHHHh--hc--CCCccCCCCCccCCCcchh
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW---TFNPLLLLNCLKNL--RN--QGSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~---~~~~~~~~~~l~~l--~~--~~~~~~~~LSgGekqRv~l 219 (313)
.+.++|++|+... +. .|+.+|+.+......... ......+.++++.+ +. ..+.++.+|||||+||++|
T Consensus 85 ~~~~~i~~~~q~~~l-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~l 161 (226)
T cd03248 85 YLHSKVSLVGQEPVL-FA--RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAI 161 (226)
T ss_pred HHHhhEEEEecccHH-Hh--hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHH
Confidence 2458999999643 32 588888865422110000 00001134556666 32 2456678999999999999
Q ss_pred hhhcccCccEEEEcCcccccChhhHH----HHHHhhc--CeEEEEcChHHHH
Q 021380 220 DILVGLQHKVVIVDGNYLFLDGGVWK----DVSSMFD--EKWFIEVDLDTAM 265 (313)
Q Consensus 220 a~al~~~a~~li~d~~~llLDE~~~~----~l~~l~~--~~i~vtHd~~~~~ 265 (313)
|++++.+++++++|+|+..||....+ .+.++.+ .+|++|||++++.
T Consensus 162 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 213 (226)
T cd03248 162 ARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVE 213 (226)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 99999999999999999999994444 4444333 2479999999874
No 259
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.97 E-value=7e-32 Score=265.84 Aligned_cols=194 Identities=14% Similarity=0.078 Sum_probs=149.3
Q ss_pred CeEEEccceeEcc---ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-CCceeeeCCCCC---
Q 021380 76 PVVEARCMDEVYD---ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFDSQVKP--- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~---~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-~~G~i~~~~~~~--- 148 (313)
++|+++|+++.|+ +.. +|+|+||+|.+|+++||+||||||||||+|+|+|+++ | ++|+|.++|.+.
T Consensus 256 ~~l~~~~l~~~~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~~G~i~~~g~~~~~~ 328 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRK----RVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP---GKFEGNVFINGKPVDIR 328 (500)
T ss_pred ceEEEeCCccccccccccc----ccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCeEEEECCEECCCC
Confidence 4799999999993 344 8999999999999999999999999999999999997 7 799999988542
Q ss_pred ------CCeEEEEeccCC--CCCcccCCcccCHHHHHH--hcC---CCCCccHHHHHHHHHHhhcC---CCccCCCCCcc
Q 021380 149 ------PDVATVLPMDGF--HLYLSQLDAMEDPKEAHA--RRG---APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHG 212 (313)
Q Consensus 149 ------~~~i~~v~q~~~--~~~~~~ltv~e~l~~~~~--~~~---~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG 212 (313)
.+.++|++|+.. .++ +.+|+.+|+.+... ... .........+.++++.++.. .++++.+||||
T Consensus 329 ~~~~~~~~~i~~v~q~~~~~~l~-~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 407 (500)
T TIGR02633 329 NPAQAIRAGIAMVPEDRKRHGIV-PILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGG 407 (500)
T ss_pred CHHHHHhCCCEEcCcchhhCCcC-CCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHH
Confidence 235899999942 122 35899999876431 111 11112234577888888853 46778899999
Q ss_pred CCCcchhhhhcccCccEEEEcCcccccChhhHH----HHHHhhcC---eEEEEcChHHHHH---HHH----hhhhccCC
Q 021380 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK----DVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 213 ekqRv~la~al~~~a~~li~d~~~llLDE~~~~----~l~~l~~~---~i~vtHd~~~~~~---rvi----gr~v~~G~ 277 (313)
||||++||++++.++++|++|||+..||....+ .+.++.+. +|++|||++++.. |++ |+++..++
T Consensus 408 qkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~ 486 (500)
T TIGR02633 408 NQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFV 486 (500)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEc
Confidence 999999999999999999999999999994443 34444332 5799999999876 443 66665443
No 260
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=3.6e-31 Score=263.76 Aligned_cols=197 Identities=14% Similarity=0.064 Sum_probs=152.5
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEE
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~ 154 (313)
.++|+++||++.|+++. +|+||||+|.+|+++||+||||||||||+++|+|+++ |++|+|.+++. ..++|
T Consensus 322 ~~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~---~~i~~ 391 (556)
T PRK11819 322 DKVIEAENLSKSFGDRL----LIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ---PDSGTIKIGET---VKLAY 391 (556)
T ss_pred CeEEEEEeEEEEECCee----eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCc---eEEEE
Confidence 35899999999998876 9999999999999999999999999999999999999 99999998542 25899
Q ss_pred EeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhcccCccEEE
Q 021380 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 155 v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~a~~li 231 (313)
++|+...++ +.+|+.+|+.+.....+... .......+++.++.. .++++.+||||||||++||++++.++++|+
T Consensus 392 v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 468 (556)
T PRK11819 392 VDQSRDALD-PNKTVWEEISGGLDIIKVGN--REIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLL 468 (556)
T ss_pred EeCchhhcC-CCCCHHHHHHhhcccccccc--cHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999852222 35899999887543222211 123345678888753 367888999999999999999999999999
Q ss_pred EcCcccccChhhHHHHHHhh----cCeEEEEcChHHHHH---HHH-----hhhh-ccCChhHHHHH
Q 021380 232 VDGNYLFLDGGVWKDVSSMF----DEKWFIEVDLDTAMQ---RVL-----KRHI-STGKPPDVAKW 284 (313)
Q Consensus 232 ~d~~~llLDE~~~~~l~~l~----~~~i~vtHd~~~~~~---rvi-----gr~v-~~G~~~e~~~~ 284 (313)
+|+|+..||....+.+.+++ ..+|+||||++++.. |++ |+++ ..|...+...+
T Consensus 469 LDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 469 LDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred EcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 99999999995444444433 336799999998876 443 2333 35666555443
No 261
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=4.9e-32 Score=223.01 Aligned_cols=178 Identities=14% Similarity=0.122 Sum_probs=147.1
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------- 149 (313)
.++++++...-++.. +|+++||.+.+||+++|+||+|||||||+|+++.++. |++|++.|.|++..
T Consensus 3 lle~kq~~y~a~~a~----il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis---p~~G~l~f~Ge~vs~~~pea~ 75 (223)
T COG4619 3 LLELKQVGYLAGDAK----ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDVSTLKPEAY 75 (223)
T ss_pred chHHHHHHhhcCCCe----eecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC---CCCceEEEcCccccccChHHH
Confidence 466777766666666 9999999999999999999999999999999999999 99999999998742
Q ss_pred -CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhccc
Q 021380 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 150 -~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~ 225 (313)
..++|+-|.+..+. -||++|+-|+...+. ...+...+..+|++++.. .++.+.+|||||+||++|++.+..
T Consensus 76 Rq~VsY~~Q~paLfg---~tVeDNlifP~~~r~--rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~ 150 (223)
T COG4619 76 RQQVSYCAQTPALFG---DTVEDNLIFPWQIRN--RRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQF 150 (223)
T ss_pred HHHHHHHHcCccccc---cchhhccccchHHhc--cCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhc
Confidence 35889999875444 499999999766543 344778888999999843 567888999999999999999999
Q ss_pred CccEEEEcCcccccChhhHHHHHH----hhc-C---eEEEEcChHHHHH
Q 021380 226 QHKVVIVDGNYLFLDGGVWKDVSS----MFD-E---KWFIEVDLDTAMQ 266 (313)
Q Consensus 226 ~a~~li~d~~~llLDE~~~~~l~~----l~~-~---~i~vtHd~~~~~~ 266 (313)
.+.+|++|+++.-|||...+.+.+ ++. + .++||||.+++.+
T Consensus 151 ~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~r 199 (223)
T COG4619 151 MPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIR 199 (223)
T ss_pred CCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhh
Confidence 999999999999999954444443 332 1 4699999999765
No 262
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=7.1e-31 Score=241.79 Aligned_cols=211 Identities=15% Similarity=0.141 Sum_probs=171.9
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCceeeeCCCC----
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK---- 147 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~--~p~~G~i~~~~~~---- 147 (313)
.+++|+++|+++.|+.......++++|||+|.+||.+||+|.+|||||-..+.|+|+++.. ..-+|+|.++|.+
T Consensus 3 ~~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~ 82 (534)
T COG4172 3 TMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82 (534)
T ss_pred CCcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence 3578999999999974334445999999999999999999999999999999999999621 1237899999976
Q ss_pred --------CCCeEEEEeccCCCCCcccCCcccCHHHHHHh-cCCCCCccHHHHHHHHHHhhcC-----CCccCCCCCccC
Q 021380 148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGV 213 (313)
Q Consensus 148 --------~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~LSgGe 213 (313)
+..+|+++||++..-.++-.|+...+...... ++...+...+++.++|+.++.. .+.++++|||||
T Consensus 83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGq 162 (534)
T COG4172 83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQ 162 (534)
T ss_pred CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcch
Confidence 23569999999987777777887777776543 4566666778889999999832 356888999999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccCCh
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKP 278 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~~ 278 (313)
||||.||.|++..+++||.|+|+--||- ++++.|+++..+ .+|||||+..+.+ ||. |++++.|..
T Consensus 163 RQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t 242 (534)
T COG4172 163 RQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTT 242 (534)
T ss_pred hhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcH
Confidence 9999999999999999999999999998 455555555443 4699999999987 655 999999998
Q ss_pred hHHHHH
Q 021380 279 PDVAKW 284 (313)
Q Consensus 279 ~e~~~~ 284 (313)
+.+...
T Consensus 243 ~~lF~~ 248 (534)
T COG4172 243 ETLFAA 248 (534)
T ss_pred HHHhhC
Confidence 887653
No 263
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.97 E-value=1.7e-31 Score=231.77 Aligned_cols=153 Identities=15% Similarity=0.097 Sum_probs=125.6
Q ss_pred eEEEccceeEccc------cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCCceeeeCCCCC
Q 021380 77 VVEARCMDEVYDA------LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVKP 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~------~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll--~~~~p~~G~i~~~~~~~ 148 (313)
.|+++||++.|++ .. +|+++||+|++|++++|+||||||||||+++|+|++ + |++|+|.++|.+.
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~----~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~---~~~G~i~~~g~~~ 75 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQ----LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL---GVSGEVLINGRPL 75 (194)
T ss_pred EEEEEeeEEEEecCCCccccc----ceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCceEEEECCEeC
Confidence 4889999999975 34 999999999999999999999999999999999999 8 9999999998653
Q ss_pred -----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhc
Q 021380 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 -----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al 223 (313)
.+.++|++|+...++ .+|+.+|+.+.... ..|||||+||++||+++
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~--~~t~~~~i~~~~~~---------------------------~~LS~G~~qrv~laral 126 (194)
T cd03213 76 DKRSFRKIIGYVPQDDILHP--TLTVRETLMFAAKL---------------------------RGLSGGERKRVSIALEL 126 (194)
T ss_pred chHhhhheEEEccCcccCCC--CCcHHHHHHHHHHh---------------------------ccCCHHHHHHHHHHHHH
Confidence 346899999864333 47888887653211 08999999999999999
Q ss_pred ccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChH-HHH
Q 021380 224 GLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLD-TAM 265 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~-~~~ 265 (313)
+.+++++++|+|+..||.. +.+.|.++.+ .+|++|||++ ++.
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 176 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIF 176 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHH
Confidence 9999999999999999994 3444444432 2479999996 444
No 264
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.97 E-value=1.6e-31 Score=272.55 Aligned_cols=192 Identities=16% Similarity=0.150 Sum_probs=153.5
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
-|+++||+++|++.. ..+|+|+||+|++|+.+||+|+||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 451 ~I~~~nvsf~Y~~~~--~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l 525 (686)
T TIGR03797 451 AIEVDRVTFRYRPDG--PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET---PESGSVFYDGQDLAGLDVQAV 525 (686)
T ss_pred eEEEEEEEEEcCCCC--ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcCcCCHHHH
Confidence 599999999995321 129999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCCccC----CCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVYA----PSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~~~~----~~LSgGekq 215 (313)
++.++|++|+++.+. -|++||+.++ .+ .+.+++.++++..+. +.+..+ ..|||||||
T Consensus 526 r~~i~~v~Q~~~lf~---gTI~eNi~~~-----~~--~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQ 595 (686)
T TIGR03797 526 RRQLGVVLQNGRLMS---GSIFENIAGG-----AP--LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQ 595 (686)
T ss_pred HhccEEEccCCccCc---ccHHHHHhcC-----CC--CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHH
Confidence 346999999976543 4999998764 12 234555566655441 223322 479999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhcCeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDEKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||||++.+++++++||++.-||.+ +.+.+.++-...|+|||+++.+.. |++ |++++.|+.+++.+
T Consensus 596 RialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 596 RLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999984 444444443346899999988876 655 99999999888754
No 265
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.97 E-value=1.9e-31 Score=267.25 Aligned_cols=195 Identities=13% Similarity=0.105 Sum_probs=154.2
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
-|+++||++.|++.. ..+|+|+||+|++|+.+||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 341 ~i~~~~vsf~y~~~~--~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~~ 415 (582)
T PRK11176 341 DIEFRNVTFTYPGKE--VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD---IDEGEILLDGHDLRDYTLASL 415 (582)
T ss_pred eEEEEEEEEecCCCC--CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC---CCCceEEECCEEhhhcCHHHH
Confidence 499999999996521 129999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccC----CCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~LSgGekq 215 (313)
.+.++|++|+++.+. -|+++|+.++ .+...+.+++.++++..+ .+.+..+ ..|||||||
T Consensus 416 ~~~i~~v~Q~~~lf~---~Ti~~Ni~~~-----~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQ 487 (582)
T PRK11176 416 RNQVALVSQNVHLFN---DTIANNIAYA-----RTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQ 487 (582)
T ss_pred HhhceEEccCceeec---chHHHHHhcC-----CCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHH
Confidence 246999999976543 5999998764 122234455555555543 2233333 369999999
Q ss_pred cchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++|||++..+++++++||++.-||+ .+.+.+.++.. .+|+|||+++.+.. +++ |++++.|+.+++.+
T Consensus 488 Ri~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 488 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred HHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999 34445555432 35799999988766 655 89999999888765
Q ss_pred H
Q 021380 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 568 ~ 568 (582)
T PRK11176 568 Q 568 (582)
T ss_pred C
Confidence 3
No 266
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.97 E-value=3.6e-31 Score=224.27 Aligned_cols=146 Identities=13% Similarity=0.020 Sum_probs=123.0
Q ss_pred EEEccceeEccc-cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEe
Q 021380 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 78 l~v~~ls~~y~~-~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~ 156 (313)
|+++|+++.|++ +. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.+++. +.++|++
T Consensus 1 i~~~~~~~~~~~~~~----~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~---~~i~~~~ 70 (166)
T cd03223 1 IELENLSLATPDGRV----LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP---WGSGRIGMPEG---EDLLFLP 70 (166)
T ss_pred CEEEEEEEEcCCCCe----eeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCC---ceEEEEC
Confidence 468999999963 44 9999999999999999999999999999999999999 99999999874 4699999
Q ss_pred ccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcc
Q 021380 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (313)
Q Consensus 157 q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~ 236 (313)
|+... + ..|+.+|+.+. ...+|||||+||+++|++++.+++++++|+|+
T Consensus 71 q~~~~-~--~~tv~~nl~~~----------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt 119 (166)
T cd03223 71 QRPYL-P--LGTLREQLIYP----------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEAT 119 (166)
T ss_pred CCCcc-c--cccHHHHhhcc----------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 99642 3 36888876532 35799999999999999999999999999999
Q ss_pred cccChhhHHHHHHhh----cCeEEEEcChHHH
Q 021380 237 LFLDGGVWKDVSSMF----DEKWFIEVDLDTA 264 (313)
Q Consensus 237 llLDE~~~~~l~~l~----~~~i~vtHd~~~~ 264 (313)
..||....+.+.+++ ..+|++|||.+..
T Consensus 120 ~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~ 151 (166)
T cd03223 120 SALDEESEDRLYQLLKELGITVISVGHRPSLW 151 (166)
T ss_pred cccCHHHHHHHHHHHHHhCCEEEEEeCChhHH
Confidence 999995555444443 2357999998754
No 267
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=3.7e-31 Score=225.63 Aligned_cols=146 Identities=21% Similarity=0.236 Sum_probs=122.8
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------CC
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PD 150 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------~~ 150 (313)
|+++|+++.|++.. +|+++||++.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+
T Consensus 1 l~~~~l~~~~~~~~----~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (173)
T cd03230 1 IEVRNLSKRYGKKT----ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEPEEVKR 73 (173)
T ss_pred CEEEEEEEEECCee----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccchHhhhc
Confidence 46899999998765 9999999999999999999999999999999999999 9999999988642 24
Q ss_pred eEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEE
Q 021380 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 151 ~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~l 230 (313)
.++|++|+...++ .+|+.+|+. |||||+||++||++++.+++++
T Consensus 74 ~i~~~~q~~~~~~--~~tv~~~~~----------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 74 RIGYLPEEPSLYE--NLTVRENLK----------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred cEEEEecCCcccc--CCcHHHHhh----------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 5899999964332 357776642 9999999999999999999999
Q ss_pred EEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHHH
Q 021380 231 IVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 231 i~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
++|+|+..||. .+.+.|.++.+. +|++|||.+++..
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 99999999999 444555554432 4799999988764
No 268
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.97 E-value=1.3e-31 Score=241.12 Aligned_cols=189 Identities=16% Similarity=0.127 Sum_probs=145.0
Q ss_pred EEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC--------C
Q 021380 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--------D 150 (313)
Q Consensus 79 ~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~--------~ 150 (313)
+++||++. . +|+|+||+|++|++++|+|+||||||||+++|+|+++ .+|+|.++|.+.. +
T Consensus 2 ~~~~l~~~----~----~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~----~~G~i~~~g~~i~~~~~~~~~~ 69 (248)
T PRK03695 2 QLNDVAVS----T----RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP----GSGSIQFAGQPLEAWSAAELAR 69 (248)
T ss_pred cccccchh----c----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC----CCeEEEECCEecCcCCHHHHhh
Confidence 57788875 2 7999999999999999999999999999999999984 4899999986531 3
Q ss_pred eEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhccc---
Q 021380 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL--- 225 (313)
Q Consensus 151 ~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~--- 225 (313)
.++|++|++..++ .+|+.+|+.+.... ........+.+.++++.++.. .++++..|||||+||++||++++.
T Consensus 70 ~i~~v~q~~~~~~--~~tv~~nl~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~ 146 (248)
T PRK03695 70 HRAYLSQQQTPPF--AMPVFQYLTLHQPD-KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWP 146 (248)
T ss_pred heEEecccCccCC--CccHHHHHHhcCcc-CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence 4899999854333 37999998765221 111222244667888888743 467788999999999999999986
Q ss_pred ----CccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 226 ----QHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 226 ----~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
+++++++|+|+..||.. +.+.|.++.+ .+|++|||++++.. +++ |+++..|...++.
T Consensus 147 ~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 147 DINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred ccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 67999999999999994 3444444432 25799999998766 444 8888888877653
No 269
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=2.8e-31 Score=221.46 Aligned_cols=207 Identities=14% Similarity=0.141 Sum_probs=161.9
Q ss_pred CCeEEEccceeEccccc-----cccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC--
Q 021380 75 IPVVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-- 147 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~-----~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~-- 147 (313)
|+.|+|+|++|.|..+. ....+++.|||++++|+.+||||.||||||||.|+|+|+++ |++|+|.++|..
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~---PTsG~il~n~~~L~ 78 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGEILINDHPLH 78 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC---CCCceEEECCcccc
Confidence 56799999999996432 12448899999999999999999999999999999999999 999999999975
Q ss_pred ------CCCeEEEEeccCCCCCcccCCcccCHHHHHHhc-CCCCCccHHHHHHHHHHhhc---CCCccCCCCCccCCCcc
Q 021380 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPV 217 (313)
Q Consensus 148 ------~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~l~~---~~~~~~~~LSgGekqRv 217 (313)
+.+.+-++|||+...+++.+.+-+.+..+.... ........+++.+.|..+|. ..+.++..||-||||||
T Consensus 79 ~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRV 158 (267)
T COG4167 79 FGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRV 158 (267)
T ss_pred ccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHH
Confidence 345689999998766666666666555554432 22333345567788888884 34567889999999999
Q ss_pred hhhhhcccCccEEEEcCcccccChh----hHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 218 EDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 218 ~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
++|+|++..+.+++.|+.+..||-. ++..+.++.++ -|+|+.++..+.. .++ |.++++|.+.++.
T Consensus 159 aLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~ 238 (267)
T COG4167 159 ALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238 (267)
T ss_pred HHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhh
Confidence 9988888888888888888888873 44444444443 2699999998876 444 9999999999986
Q ss_pred HH
Q 021380 283 KW 284 (313)
Q Consensus 283 ~~ 284 (313)
..
T Consensus 239 a~ 240 (267)
T COG4167 239 AS 240 (267)
T ss_pred cC
Confidence 54
No 270
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.97 E-value=2.5e-31 Score=272.10 Aligned_cols=193 Identities=16% Similarity=0.131 Sum_probs=153.2
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
.|+++||+++|++.. ..+|+|+||+|++|+.+||+|+||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 477 ~I~~~~vsf~y~~~~--~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l 551 (710)
T TIGR03796 477 YVELRNITFGYSPLE--PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ---PWSGEILFDGIPREEIPREVL 551 (710)
T ss_pred eEEEEEEEEecCCCC--CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEeHHHCCHHHH
Confidence 599999999997521 129999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCcc----CCCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~LSgGekq 215 (313)
++.++|++|+++.+. -|++||+.++ .+ ..+.+++.+.++..+ .+.+.. ...|||||||
T Consensus 552 r~~i~~v~Q~~~lf~---gTi~eNi~l~-----~~-~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQ 622 (710)
T TIGR03796 552 ANSVAMVDQDIFLFE---GTVRDNLTLW-----DP-TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQ 622 (710)
T ss_pred HhheeEEecCChhhh---ccHHHHhhCC-----CC-CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHH
Confidence 356999999976543 5999998753 11 234455555555544 122332 3479999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhhH----HHHHHhhcCeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFDEKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~~----~~l~~l~~~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++|||+++.+++++++||++.-||++.- +.+.+.-..+|+|||+++.+.. |++ |++++.|+.+++.+
T Consensus 623 RiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 623 RLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred HHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 99999999999999999999999999444 4444422235799999998876 655 99999999888765
No 271
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-31 Score=263.05 Aligned_cols=195 Identities=15% Similarity=0.170 Sum_probs=154.0
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------- 149 (313)
.|+++||++.|+.++ ...+|+|+||+|++|+++||+||||+||||++++|..++. |++|+|.+||.+.+
T Consensus 465 ~IeF~~VsFaYP~Rp-~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~---PtsG~IllDG~~i~~~~~~~l 540 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRP-DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD---PTSGRILLDGVPISDINHKYL 540 (716)
T ss_pred eEEEEEeeeecCCCC-CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCeehhhcCHHHH
Confidence 699999999998875 4569999999999999999999999999999999999999 99999999998743
Q ss_pred -CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHH---------HHHhhcCCCccC----CCCCccCCC
Q 021380 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---------LKNLRNQGSVYA----PSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~---------l~~l~~~~~~~~----~~LSgGekq 215 (313)
+.||+|.|++..+. -|+.|||.++.. ..+.+.+... +..+-.+-+..+ .+|||||||
T Consensus 541 r~~Ig~V~QEPvLFs---~sI~eNI~YG~~------~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQ 611 (716)
T KOG0058|consen 541 RRKIGLVGQEPVLFS---GSIRENIAYGLD------NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQ 611 (716)
T ss_pred HHHeeeeeccceeec---ccHHHHHhcCCC------CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHH
Confidence 56999999986544 599999987643 2223333322 233333333333 399999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||||++.++++||+||-+.-||-+. .+.+.+..+ .+|+|.|-+..+.. +|+ |++++.|+-+|+.+
T Consensus 612 RIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 612 RIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred HHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhh
Confidence 9999999999999999999999999733 333333333 25799999999988 544 99999998888765
Q ss_pred H
Q 021380 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 692 ~ 692 (716)
T KOG0058|consen 692 K 692 (716)
T ss_pred C
Confidence 4
No 272
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=9.4e-32 Score=240.03 Aligned_cols=190 Identities=14% Similarity=0.143 Sum_probs=142.5
Q ss_pred EEEccceeEcc-ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 78 VEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 78 l~v~~ls~~y~-~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
|+++|+++.|+ +.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~~----~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~v~~~g~~~~~~~~~~~ 73 (236)
T cd03253 1 IEFENVTFAYDPGRP----VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD---VSSGSILIDGQDIREVTLDSL 73 (236)
T ss_pred CEEEEEEEEeCCCCc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEhhhCCHHHH
Confidence 46899999996 454 8999999999999999999999999999999999999 9999999998542
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHH---------HHHHhhc----CCCccCCCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN---------CLKNLRN----QGSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~---------~l~~l~~----~~~~~~~~LSgGekq 215 (313)
.+.++|++|+... +. .|+.+|+.+.... . ....+.. .+..+.. ..+.++..||+||+|
T Consensus 74 ~~~i~~~~q~~~~-~~--~tv~~nl~~~~~~--~----~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~ 144 (236)
T cd03253 74 RRAIGVVPQDTVL-FN--DTIGYNIRYGRPD--A----TDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQ 144 (236)
T ss_pred HhhEEEECCCChh-hc--chHHHHHhhcCCC--C----CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHH
Confidence 2358999999643 32 5899988664211 1 1111222 2222211 123456799999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhhH----HHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~~----~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||++++.+++++++|+|+..||.... +.|.++.+ .+|++||+.+.+.. |++ |+++..|...++..
T Consensus 145 rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 145 RVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA 224 (236)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999999999999444 44444433 25799999998865 444 77777777666543
No 273
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.97 E-value=8.5e-31 Score=225.16 Aligned_cols=150 Identities=20% Similarity=0.226 Sum_probs=123.0
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
++|+++|+++.| +|+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~l~~~~l~~~~--------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 71 (182)
T cd03215 3 PVLEVRGLSVKG--------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP---PASGEITLDGKPVTRRSPRD 71 (182)
T ss_pred cEEEEeccEEEe--------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccCHHH
Confidence 479999999998 6899999999999999999999999999999999999 9999999998542
Q ss_pred --CCeEEEEeccCC-CCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhccc
Q 021380 149 --PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 --~~~i~~v~q~~~-~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
.+.++|++|+.. ....+.+|+.+|+.+... ||+||+||++||++++.
T Consensus 72 ~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------LS~G~~qrl~la~al~~ 121 (182)
T cd03215 72 AIRAGIAYVPEDRKREGLVLDLSVAENIALSSL------------------------------LSGGNQQKVVLARWLAR 121 (182)
T ss_pred HHhCCeEEecCCcccCcccCCCcHHHHHHHHhh------------------------------cCHHHHHHHHHHHHHcc
Confidence 235899999842 112224688887765311 99999999999999999
Q ss_pred CccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 226 QHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 226 ~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
+++++++|+|+..||.. +.+.+.++.+ .+|++|||++++..
T Consensus 122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 169 (182)
T cd03215 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLG 169 (182)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99999999999999994 4444444432 24799999987764
No 274
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.6e-31 Score=252.92 Aligned_cols=192 Identities=14% Similarity=0.156 Sum_probs=156.1
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------C
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------P 149 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--------~ 149 (313)
++++|+++.|++.+ ++++|+||++++|+.++|+|+||||||||+++|+|+++ |++|+|.+||.+. .
T Consensus 321 i~~~~l~~~y~~g~---~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~---~~~G~I~vng~~l~~l~~~~~~ 394 (559)
T COG4988 321 ISLENLSFRYPDGK---PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA---PTQGEIRVNGIDLRDLSPEAWR 394 (559)
T ss_pred eeecceEEecCCCC---cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCccccccCHHHHH
Confidence 55669999998752 29999999999999999999999999999999999999 9999999999763 2
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--------CCCccCC----CCCccCCCcc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--------QGSVYAP----SFDHGVGDPV 217 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--------~~~~~~~----~LSgGekqRv 217 (313)
+.+++++|+++.+. -|++||+.++. + ....+.+.++++..+. +.+..+. .|||||+|||
T Consensus 395 k~i~~v~Q~p~lf~---gTireNi~l~~-----~-~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRl 465 (559)
T COG4988 395 KQISWVSQNPYLFA---GTIRENILLAR-----P-DASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRL 465 (559)
T ss_pred hHeeeeCCCCcccc---ccHHHHhhccC-----C-cCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHH
Confidence 56999999987554 49999998752 2 2344556666666551 3344444 5999999999
Q ss_pred hhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhcC--eEEEEcChHHHHH--HHH----hhhhccCChhHHHHH
Q 021380 218 EDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 218 ~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~~ 284 (313)
++|||+..+++++++|||+.-||- .+.+.|.++.+. +++|||++..+.. +|+ ||+++.|..+++.+.
T Consensus 466 aLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~ 544 (559)
T COG4988 466 ALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK 544 (559)
T ss_pred HHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc
Confidence 999999999999999999999997 345555555543 5799999999888 555 999999999888554
No 275
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=4.4e-31 Score=228.89 Aligned_cols=155 Identities=12% Similarity=0.076 Sum_probs=124.4
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCCceeeeCCCCC----CC
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVKP----PD 150 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll--~~~~p~~G~i~~~~~~~----~~ 150 (313)
.|+++|+++.|++......+|+++||++++|++++|+||||||||||+++|+|++ + |++|+|.++|.+. .+
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~~~G~i~~~g~~~~~~~~~ 79 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAG---VITGEILINGRPLDKNFQR 79 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CcceEEEECCEehHHHhhh
Confidence 5899999999975110112899999999999999999999999999999999975 4 7999999998653 34
Q ss_pred eEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEE
Q 021380 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 151 ~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~l 230 (313)
.++|++|++..++ .+|+.+|+.+.... . .|||||+||++||++++.+++++
T Consensus 80 ~i~~~~q~~~~~~--~~tv~~~l~~~~~~----------------~-----------~LSgGe~qrv~la~al~~~p~vl 130 (192)
T cd03232 80 STGYVEQQDVHSP--NLTVREALRFSALL----------------R-----------GLSVEQRKRLTIGVELAAKPSIL 130 (192)
T ss_pred ceEEecccCcccc--CCcHHHHHHHHHHH----------------h-----------cCCHHHhHHHHHHHHHhcCCcEE
Confidence 6899999864333 47899888754210 0 89999999999999999999999
Q ss_pred EEcCcccccChh----hHHHHHHhhc---CeEEEEcChHH
Q 021380 231 IVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDT 263 (313)
Q Consensus 231 i~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~ 263 (313)
++|+|+..||.. +++.+.++.+ .+|++|||++.
T Consensus 131 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~ 170 (192)
T cd03232 131 FLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSA 170 (192)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChH
Confidence 999999999993 4444444432 24799999984
No 276
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.97 E-value=6.6e-31 Score=224.07 Aligned_cols=145 Identities=16% Similarity=0.163 Sum_probs=119.3
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------C
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------P 149 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--------~ 149 (313)
|+++|+++.|++.. ..+++++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 1 i~~~~l~~~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 75 (173)
T cd03246 1 LEVENVSFRYPGAE--PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR---PTSGRVRLDGADISQWDPNELG 75 (173)
T ss_pred CEEEEEEEEcCCCC--CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEEcccCCHHHHH
Confidence 46899999997521 128999999999999999999999999999999999999 9999999998542 2
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccE
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~ 229 (313)
+.++|++|++.. +. .|+.+|+ |||||+||++||++++.++++
T Consensus 76 ~~i~~~~q~~~~-~~--~tv~~~l-----------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 76 DHVGYLPQDDEL-FS--GSIAENI-----------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred hheEEECCCCcc-cc--CcHHHHC-----------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 458999998642 22 3666654 999999999999999999999
Q ss_pred EEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHH
Q 021380 230 VIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAM 265 (313)
Q Consensus 230 li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~ 265 (313)
+++|+|+..||.. +.+.+.++.+ .+|++|||++.+.
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 9999999999994 4444444433 2579999998763
No 277
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=5.9e-31 Score=225.38 Aligned_cols=148 Identities=21% Similarity=0.215 Sum_probs=122.4
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---------
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--------- 148 (313)
|+++|+++.|+++. +|+++||++++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 i~~~~l~~~~~~~~----~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (178)
T cd03229 1 LELKNVSKRYGQKT----VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE---PDSGSILIDGEDLTDLEDELPP 73 (178)
T ss_pred CEEEEEEEEECCeE----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccchhHHH
Confidence 46899999998766 9999999999999999999999999999999999999 9999999988532
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCc
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a 227 (313)
.+.++|++|++..++ .+|+.+|+.+. ||+||+||++||++++.++
T Consensus 74 ~~~~i~~~~q~~~~~~--~~t~~~~l~~~--------------------------------lS~G~~qr~~la~al~~~p 119 (178)
T cd03229 74 LRRRIGMVFQDFALFP--HLTVLENIALG--------------------------------LSGGQQQRVALARALAMDP 119 (178)
T ss_pred HhhcEEEEecCCccCC--CCCHHHheeec--------------------------------CCHHHHHHHHHHHHHHCCC
Confidence 245899999865332 36776665431 9999999999999999999
Q ss_pred cEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 228 KVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 228 ~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
+++++|+|+..||.. +.+.+.++.+ .++++|||++++..
T Consensus 120 ~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 166 (178)
T cd03229 120 DVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAAR 166 (178)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 999999999999994 4444444433 24699999988753
No 278
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=4.4e-31 Score=232.51 Aligned_cols=205 Identities=15% Similarity=0.069 Sum_probs=158.1
Q ss_pred CeEEEccceeEcccc-----------------ccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC
Q 021380 76 PVVEARCMDEVYDAL-----------------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK 138 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~-----------------~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~ 138 (313)
.++.++||+|.|.-. ...+.++.||||+|++|+++|++|+|||||||++|+|+|++. |++
T Consensus 2 ~~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~---p~~ 78 (325)
T COG4586 2 AMIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL---PTS 78 (325)
T ss_pred ceeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc---cCC
Confidence 467788888877311 112448899999999999999999999999999999999999 999
Q ss_pred ceeeeCCCCCCC-------eEEEEecc-CCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCC
Q 021380 139 ASSFDSQVKPPD-------VATVLPMD-GFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPS 208 (313)
Q Consensus 139 G~i~~~~~~~~~-------~i~~v~q~-~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~ 208 (313)
|.|.++|.++.+ .+++++-. ...++. +.+.+.+......|..|...-.++...+.+.++.. .+.++..
T Consensus 79 G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wd--lp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~ 156 (325)
T COG4586 79 GKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWD--LPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRK 156 (325)
T ss_pred CeEEecCcCcchhHHHHHHHHHHHhhhhheeeee--chhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhh
Confidence 999999987543 24444332 222222 45666677677778777655556666676777654 6778889
Q ss_pred CCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHH----HhhcC----eEEEEcChHHHHH---HHH----hhhh
Q 021380 209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS----SMFDE----KWFIEVDLDTAMQ---RVL----KRHI 273 (313)
Q Consensus 209 LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~----~l~~~----~i~vtHd~~~~~~---rvi----gr~v 273 (313)
||-|||+|+.||.++++++++|++|+|++.||-.....++ +...+ +++.||+++.+.+ |++ |+++
T Consensus 157 LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv 236 (325)
T COG4586 157 LSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLV 236 (325)
T ss_pred ccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEe
Confidence 9999999999999999999999999999999984444444 33322 5699999998887 665 9999
Q ss_pred ccCChhHHHHHH
Q 021380 274 STGKPPDVAKWR 285 (313)
Q Consensus 274 ~~G~~~e~~~~~ 285 (313)
.+|+..++.+++
T Consensus 237 ~dg~l~~l~~~f 248 (325)
T COG4586 237 FDGTLAQLQEQF 248 (325)
T ss_pred ecccHHHHHHHh
Confidence 999988887764
No 279
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=1.7e-30 Score=262.45 Aligned_cols=196 Identities=14% Similarity=0.036 Sum_probs=147.6
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEE
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~ 154 (313)
|.||+++||++.|++.. +|+||||+|++|+++||+||||||||||||+|+|+++ |++|+|.+++.. .+++
T Consensus 1 m~~l~i~~ls~~~~~~~----il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~---p~~G~I~~~~~~---~~~~ 70 (635)
T PRK11147 1 MSLISIHGAWLSFSDAP----LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL---LDDGRIIYEQDL---IVAR 70 (635)
T ss_pred CcEEEEeeEEEEeCCce----eEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEeCCCC---EEEE
Confidence 45899999999998876 9999999999999999999999999999999999999 999999987632 3677
Q ss_pred EeccCCCCCcccCCcccCHH------------------------------HHHHh---c-CCCCCccHHHHHHHHHHhhc
Q 021380 155 LPMDGFHLYLSQLDAMEDPK------------------------------EAHAR---R-GAPWTFNPLLLLNCLKNLRN 200 (313)
Q Consensus 155 v~q~~~~~~~~~ltv~e~l~------------------------------~~~~~---~-~~~~~~~~~~~~~~l~~l~~ 200 (313)
++|+.... ...++.+++. ..... . .........++.++++.++.
T Consensus 71 l~q~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 148 (635)
T PRK11147 71 LQQDPPRN--VEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGL 148 (635)
T ss_pred eccCCCCC--CCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCC
Confidence 77764211 1123333321 00000 0 00111123467788888886
Q ss_pred CCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhc----CeEEEEcChHHHHH---HHH----
Q 021380 201 QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL---- 269 (313)
Q Consensus 201 ~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi---- 269 (313)
..++++.+|||||||||+||++++.++++|++|+|+..||....+.|.+++. .+|+||||.+++.. +++
T Consensus 149 ~~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~ 228 (635)
T PRK11147 149 DPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDR 228 (635)
T ss_pred CCCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEEC
Confidence 6678888999999999999999999999999999999999966555555543 35799999998876 554
Q ss_pred hhhhc-cCChhHHH
Q 021380 270 KRHIS-TGKPPDVA 282 (313)
Q Consensus 270 gr~v~-~G~~~e~~ 282 (313)
|+++. .|+..+..
T Consensus 229 G~i~~~~g~~~~~~ 242 (635)
T PRK11147 229 GKLVSYPGNYDQYL 242 (635)
T ss_pred CEEEEecCCHHHHH
Confidence 77664 57665543
No 280
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.97 E-value=6.6e-31 Score=263.71 Aligned_cols=191 Identities=14% Similarity=0.144 Sum_probs=150.4
Q ss_pred eEEEccceeEc-cccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y-~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
-|+++||++.| ++.. +|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.++|.+.
T Consensus 349 ~i~~~~vsf~~~~~~~----vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~----p~~G~I~i~g~~i~~~~~~~ 420 (588)
T PRK11174 349 TIEAEDLEILSPDGKT----LAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL----PYQGSLKINGIELRELDPES 420 (588)
T ss_pred eEEEEeeEEeccCCCe----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC----CCCcEEEECCEecccCCHHH
Confidence 49999999755 4444 999999999999999999999999999999999998 7799999999763
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccC----CCCCccCC
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGVG 214 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~LSgGek 214 (313)
++.++|++|+++.+. -|++||+.++. + ..+.+++.++++..+ .+.+..+ ..||||||
T Consensus 421 lr~~i~~v~Q~~~LF~---~TI~eNI~~g~-----~-~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQr 491 (588)
T PRK11174 421 WRKHLSWVGQNPQLPH---GTLRDNVLLGN-----P-DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQA 491 (588)
T ss_pred HHhheEEecCCCcCCC---cCHHHHhhcCC-----C-CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHH
Confidence 346999999976543 59999998752 2 233445555554433 2334333 37999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~ 282 (313)
||++||||++.+++++++|+++.-||.+ +.+.+.++.+ .+|+|||+++.+.. +++ |++++.|+.+++.
T Consensus 492 QRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~ 571 (588)
T PRK11174 492 QRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELS 571 (588)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHH
Confidence 9999999999999999999999999994 4444444432 35799999988876 555 8999999988876
Q ss_pred HH
Q 021380 283 KW 284 (313)
Q Consensus 283 ~~ 284 (313)
..
T Consensus 572 ~~ 573 (588)
T PRK11174 572 QA 573 (588)
T ss_pred hc
Confidence 53
No 281
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=8e-31 Score=229.01 Aligned_cols=167 Identities=16% Similarity=0.127 Sum_probs=129.5
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------C
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------P 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------~ 149 (313)
++.++||+|.|+.......+|+++||+|++|++++|+||||||||||+++|+|+++...|++|+|.++|.+. .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 578999999997542334499999999999999999999999999999999999861114799999988642 2
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccE
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~ 229 (313)
+.++|++|+...++ .+|+.+|+.+..... .+..+..||+||+||++||++++.++++
T Consensus 83 ~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~---------------------~~~~~~~LS~Ge~qrl~laral~~~p~l 139 (202)
T cd03233 83 GEIIYVSEEDVHFP--TLTVRETLDFALRCK---------------------GNEFVRGISGGERKRVSIAEALVSRASV 139 (202)
T ss_pred ceEEEEecccccCC--CCcHHHHHhhhhhhc---------------------cccchhhCCHHHHHHHHHHHHHhhCCCE
Confidence 45899999864433 479999987643210 4566779999999999999999999999
Q ss_pred EEEcCcccccCh----hhHHHHHHhhcC----eEEE-EcChHHHHH
Q 021380 230 VIVDGNYLFLDG----GVWKDVSSMFDE----KWFI-EVDLDTAMQ 266 (313)
Q Consensus 230 li~d~~~llLDE----~~~~~l~~l~~~----~i~v-tHd~~~~~~ 266 (313)
+++|+|+..||. .+++.+.++.+. .+++ +|+.+.+..
T Consensus 140 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~ 185 (202)
T cd03233 140 LCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYD 185 (202)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHH
Confidence 999999999999 355555555432 2454 455666654
No 282
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.7e-31 Score=231.49 Aligned_cols=196 Identities=14% Similarity=0.054 Sum_probs=151.8
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC------
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------ 147 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~------ 147 (313)
++++|+++||+..|+++. +|+|||++|++||..+|+||||||||||+++++|.++ |++|.+.+.|..
T Consensus 28 ~~~li~l~~v~v~r~gk~----iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~---pssg~~~~~G~~~G~~~~ 100 (257)
T COG1119 28 NEPLIELKNVSVRRNGKK----ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP---PSSGDVTLLGRRFGKGET 100 (257)
T ss_pred CcceEEecceEEEECCEe----eccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC---CCCCceeeeeeeccCCcc
Confidence 456899999999999998 9999999999999999999999999999999999998 999999887754
Q ss_pred ---CCCeEEEEeccCCCCCcccCCcccCHHHHHH-hcCCC----CCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcc
Q 021380 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAP----WTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPV 217 (313)
Q Consensus 148 ---~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~-~~~~~----~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv 217 (313)
.++.||+++..-...+....+++|-+.-+.. ..|.. ...+.+++..+++.++ ...++++..||-|||||+
T Consensus 101 ~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrv 180 (257)
T COG1119 101 IFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRV 180 (257)
T ss_pred hHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHH
Confidence 2356888876532223334566666544321 11222 2344566788888888 356888999999999999
Q ss_pred hhhhhcccCccEEEEcCcccccChhhH----HHHHHhhcC-----eEEEEcChHHHHH---HHH----hhhhccC
Q 021380 218 EDDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFDE-----KWFIEVDLDTAMQ---RVL----KRHISTG 276 (313)
Q Consensus 218 ~la~al~~~a~~li~d~~~llLDE~~~----~~l~~l~~~-----~i~vtHd~~~~~~---rvi----gr~v~~G 276 (313)
.||+|++.++++|++|+|+..||-..+ +.+.++... .+||||..+++.. +++ |+++..|
T Consensus 181 LiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g 255 (257)
T COG1119 181 LIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255 (257)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeecc
Confidence 999999999999999999999998444 444444433 5899999999876 332 6666655
No 283
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=6.7e-31 Score=221.14 Aligned_cols=198 Identities=16% Similarity=0.137 Sum_probs=153.3
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCC-CCCC-----
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VKPP----- 149 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~-~~~~----- 149 (313)
.+|+++||+++|++.. +|+++||+|.+||.-+|||||||||||++..|+|..+ |+.|+|+++| .+..
T Consensus 4 ~iL~~~~vsVsF~GF~----Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr---p~~G~v~f~g~~dl~~~~e~ 76 (249)
T COG4674 4 IILYLDGVSVSFGGFK----ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR---PQEGEVLFDGDTDLTKLPEH 76 (249)
T ss_pred ceEEEeceEEEEccee----eeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC---CCcceEEEcCchhhccCCHH
Confidence 4799999999999998 9999999999999999999999999999999999999 9999999998 4422
Q ss_pred ----CeEEEEeccCCCCCcccCCcccCHHHHHHhcC--------CCCCccHHHHHHHHHHhhcCC--CccCCCCCccCCC
Q 021380 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG--------APWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGD 215 (313)
Q Consensus 150 ----~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~--------~~~~~~~~~~~~~l~~l~~~~--~~~~~~LSgGekq 215 (313)
.-||--||.+-.+. .+||+||+........ ........++.++|+..+... +.....||+||||
T Consensus 77 ~IAr~GIGRKFQ~PtVfe--~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQ 154 (249)
T COG4674 77 RIARAGIGRKFQKPTVFE--NLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQ 154 (249)
T ss_pred HHHHhccCccccCCeehh--hccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhh
Confidence 12677788865433 4899999988653221 112334567889999888554 4556699999999
Q ss_pred cchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhcC--eEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
++.|...++.+|.+|++|+|+..+-+ .+-+.++.+... +++|.|||..+.. +|. |.+.+.|+.+++-
T Consensus 155 wLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~ 234 (249)
T COG4674 155 WLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQ 234 (249)
T ss_pred hhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhh
Confidence 99996666666666666666666654 445555555543 5799999999877 333 8888999887763
No 284
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.97 E-value=3.9e-31 Score=260.61 Aligned_cols=193 Identities=11% Similarity=0.077 Sum_probs=150.6
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
++|+++|+++ . +|+++||+|.+|+++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 256 ~~l~~~~l~~-----~----~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~---p~~G~I~~~g~~i~~~~~~~ 323 (501)
T PRK10762 256 VRLKVDNLSG-----P----GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP---RTSGYVTLDGHEVVTRSPQD 323 (501)
T ss_pred cEEEEeCccc-----C----CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCHHH
Confidence 4799999984 3 7999999999999999999999999999999999999 9999999988542
Q ss_pred --CCeEEEEeccCC--CCCcccCCcccCHHHHHH-hc----C-CCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCC
Q 021380 149 --PDVATVLPMDGF--HLYLSQLDAMEDPKEAHA-RR----G-APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGD 215 (313)
Q Consensus 149 --~~~i~~v~q~~~--~~~~~~ltv~e~l~~~~~-~~----~-~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekq 215 (313)
...++|++|++. .++ +.+|+.+|+.+... .. + .......+++.++++.++.. .++++.+|||||||
T Consensus 324 ~~~~~i~~v~q~~~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekq 402 (501)
T PRK10762 324 GLANGIVYISEDRKRDGLV-LGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQ 402 (501)
T ss_pred HHHCCCEEecCccccCCCc-CCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHH
Confidence 135899999852 222 34899999876432 11 1 11112234577888888752 46778899999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~ 281 (313)
|++||++++.++++|++|+|+..||.. +++.|.++.+ .+|++|||++++.. |++ |+++..|.+.++
T Consensus 403 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 403 KVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 999999999999999999999999994 4455555443 25799999999876 444 787777766654
No 285
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=1.6e-30 Score=254.52 Aligned_cols=176 Identities=14% Similarity=0.067 Sum_probs=145.6
Q ss_pred CCCeEEEccceeEcccc-ccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeE
Q 021380 74 EIPVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVA 152 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~-~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i 152 (313)
+..+++++|+++.|++. . +++++||.|.+|+++||+||||+|||||||+|+|.+. |.+|+|.++.. -.+
T Consensus 318 g~~vl~~~~~~~~y~~~~~----l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~---~~~G~v~~g~~---v~i 387 (530)
T COG0488 318 GKLVLEFENVSKGYDGGRL----LLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG---PLSGTVKVGET---VKI 387 (530)
T ss_pred CCeeEEEeccccccCCCce----eecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc---cCCceEEeCCc---eEE
Confidence 45699999999999764 5 8999999999999999999999999999999999999 99999998764 349
Q ss_pred EEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc---CCCccCCCCCccCCCcchhhhhcccCccE
Q 021380 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 153 ~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~LSgGekqRv~la~al~~~a~~ 229 (313)
||+.|+...+. +..|+.+++... ........++..|..|+. ...+++..||||||.|+.+|..+..++.+
T Consensus 388 gyf~Q~~~~l~-~~~t~~d~l~~~------~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNv 460 (530)
T COG0488 388 GYFDQHRDELD-PDKTVLEELSEG------FPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNL 460 (530)
T ss_pred EEEEehhhhcC-ccCcHHHHHHhh------CccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCE
Confidence 99999964433 345666655432 112225678899999984 34568889999999999999999999999
Q ss_pred EEEcCcccccChhhHHHHHHhhcC----eEEEEcChHHHHH
Q 021380 230 VIVDGNYLFLDGGVWKDVSSMFDE----KWFIEVDLDTAMQ 266 (313)
Q Consensus 230 li~d~~~llLDE~~~~~l~~l~~~----~i~vtHd~~~~~~ 266 (313)
|++|+|+.-||-+.++.|.+.+.. +|+||||..++.+
T Consensus 461 LiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~ 501 (530)
T COG0488 461 LLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDR 501 (530)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHh
Confidence 999999999999887777776653 5799999999876
No 286
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=2.4e-30 Score=226.13 Aligned_cols=171 Identities=12% Similarity=0.102 Sum_probs=129.8
Q ss_pred EEEccceeEcccccc-ccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEe
Q 021380 78 VEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 78 l~v~~ls~~y~~~~~-~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~ 156 (313)
|+++||++.|++..+ ...+|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++| .++|++
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~---~~~G~i~~~g-----~i~~~~ 72 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG-----SIAYVS 72 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCCeEEEcC-----EEEEEe
Confidence 468999999976410 0129999999999999999999999999999999999999 9999999988 599999
Q ss_pred ccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHH------hhc-------CCCccCCCCCccCCCcchhhhhc
Q 021380 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN------LRN-------QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 157 q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~------l~~-------~~~~~~~~LSgGekqRv~la~al 223 (313)
|++.. +. .|+.+|+.+.... ......+.++. +.. ..+.....||+||+||++||+++
T Consensus 73 q~~~l-~~--~t~~enl~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral 142 (204)
T cd03250 73 QEPWI-QN--GTIRENILFGKPF-------DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAV 142 (204)
T ss_pred cCchh-cc--CcHHHHhccCCCc-------CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence 99654 32 6999998763211 11122222222 221 12345679999999999999999
Q ss_pred ccCccEEEEcCcccccChhhHHHHH-----Hhhc---CeEEEEcChHHHHH
Q 021380 224 GLQHKVVIVDGNYLFLDGGVWKDVS-----SMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE~~~~~l~-----~l~~---~~i~vtHd~~~~~~ 266 (313)
+.+++++++|+|+..||....+.+. +..+ .+|++||+++.+..
T Consensus 143 ~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~ 193 (204)
T cd03250 143 YSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH 193 (204)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh
Confidence 9999999999999999995444332 2222 24799999988764
No 287
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.97 E-value=7.9e-31 Score=268.10 Aligned_cols=195 Identities=15% Similarity=0.127 Sum_probs=154.3
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
.|+++||+++|++.+ +.++|+|+||+|++|++++|+||||||||||+++|.|+++ |++|+|.++|.+.
T Consensus 478 ~I~~~nVsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~l 553 (711)
T TIGR00958 478 LIEFQDVSFSYPNRP-DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ---PTGGQVLLDGVPLVQYDHHYL 553 (711)
T ss_pred eEEEEEEEEECCCCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhcCHHHH
Confidence 599999999997531 1239999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccC----CCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~LSgGekq 215 (313)
.+.++|++|+++.+. .|++||+.++. + ..+.+++.++++..+ .+.+..+ ..|||||||
T Consensus 554 r~~i~~v~Q~~~lF~---gTIreNI~~g~-----~-~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQ 624 (711)
T TIGR00958 554 HRQVALVGQEPVLFS---GSVRENIAYGL-----T-DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQ 624 (711)
T ss_pred HhhceEEecCccccc---cCHHHHHhcCC-----C-CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHH
Confidence 346999999976543 59999997642 2 122344555555443 2233322 379999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhhHHHHHHhh---c-CeEEEEcChHHHHH--HHH----hhhhccCChhHHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF---D-EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~---~-~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~~ 284 (313)
|++|||++..+++++++|+++.-||.+..+.+.+.. + .+|+|||+++.+.. +++ |++++.|+.+++.+.
T Consensus 625 RlalARALl~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~ 703 (711)
T TIGR00958 625 RIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMED 703 (711)
T ss_pred HHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhC
Confidence 999999999999999999999999996666665522 1 25799999998776 555 899999998887653
No 288
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.97 E-value=1.2e-30 Score=235.97 Aligned_cols=192 Identities=13% Similarity=0.084 Sum_probs=144.5
Q ss_pred CCeEEEccceeEccc--cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC----
Q 021380 75 IPVVEARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~--~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~---- 148 (313)
+..|+++|+++.|++ .. +|+++||+|++|+++||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 17 ~~~i~~~~l~~~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~~ 89 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKP----VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD---IFDGKIVIDGIDISKLP 89 (257)
T ss_pred CceEEEEEEEEEeCCCCCc----ceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC---CCCCeEEECCEEhhhCC
Confidence 457999999999976 34 9999999999999999999999999999999999999 9999999998642
Q ss_pred ----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHH---------HHh--h--cCCCccCCCCCc
Q 021380 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCL---------KNL--R--NQGSVYAPSFDH 211 (313)
Q Consensus 149 ----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l---------~~l--~--~~~~~~~~~LSg 211 (313)
.+.++|++|++.. +. .|+.+|+.... ......+.+.+ +.+ + ...+.....||+
T Consensus 90 ~~~~~~~i~~v~q~~~l-~~--~tv~~nl~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~ 159 (257)
T cd03288 90 LHTLRSRLSIILQDPIL-FS--GSIRFNLDPEC-------KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSV 159 (257)
T ss_pred HHHHhhhEEEECCCCcc-cc--cHHHHhcCcCC-------CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCH
Confidence 2458999999643 32 47777764210 01111222222 222 1 112334569999
Q ss_pred cCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhc------CeEEEEcChHHHHH--HHH----hhhhccCChh
Q 021380 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKWFIEVDLDTAMQ--RVL----KRHISTGKPP 279 (313)
Q Consensus 212 GekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~------~~i~vtHd~~~~~~--rvi----gr~v~~G~~~ 279 (313)
||+||++||++++.+++++++|+|+..||....+.+.+++. .+|++||+++.+.. |++ |++++.|+++
T Consensus 160 G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~ 239 (257)
T cd03288 160 GQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPE 239 (257)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999954444444332 24799999999876 444 8888888877
Q ss_pred HHHH
Q 021380 280 DVAK 283 (313)
Q Consensus 280 e~~~ 283 (313)
++..
T Consensus 240 ~~~~ 243 (257)
T cd03288 240 NLLA 243 (257)
T ss_pred HHHh
Confidence 7644
No 289
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=6.1e-31 Score=270.67 Aligned_cols=195 Identities=15% Similarity=0.154 Sum_probs=157.1
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
.|+++||+++|+.++ ++.+|+|+||.|++|+.++|+|||||||||++++|.+++. |++|+|.++|.+.
T Consensus 350 ~ief~nV~FsYPsRp-dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd---P~~G~V~idG~di~~~~~~~l 425 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRP-DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD---PTSGEVLIDGEDIRNLNLKWL 425 (1228)
T ss_pred ceEEEEEEecCCCCC-cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCceEEEcCccchhcchHHH
Confidence 599999999999875 5569999999999999999999999999999999999999 9999999999874
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHH---------HhhcCCCc----cCCCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQGSV----YAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~---------~l~~~~~~----~~~~LSgGekq 215 (313)
+..+|+|+|++..+. .|+.||+.++. +. ...+.+.+..+ .+-.+.+. .-.+|||||||
T Consensus 426 r~~iglV~QePvlF~---~tI~eNI~~G~-----~d-at~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQ 496 (1228)
T KOG0055|consen 426 RSQIGLVSQEPVLFA---TTIRENIRYGK-----PD-ATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQ 496 (1228)
T ss_pred HhhcCeeeechhhhc---ccHHHHHhcCC-----Cc-ccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHH
Confidence 246999999985433 79999998753 21 12233333332 22222222 33479999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcC------eEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~------~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||+|++.+|++|++||++..||.+.-..+++.++. .|+|+|.+.++.. +++ |++++.|+.+|++.
T Consensus 497 RIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 497 RIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred HHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999999655555555543 5899999999988 444 99999999999876
Q ss_pred H
Q 021380 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 577 ~ 577 (1228)
T KOG0055|consen 577 L 577 (1228)
T ss_pred c
Confidence 4
No 290
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.1e-30 Score=222.21 Aligned_cols=144 Identities=19% Similarity=0.226 Sum_probs=119.4
Q ss_pred EEEccceeEcccc--ccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 78 VEARCMDEVYDAL--AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~~--~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
|+++|+++.|++. . +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 l~~~~l~~~~~~~~~~----~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~ 73 (171)
T cd03228 1 IEFKNVSFSYPGRPKP----VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLES 73 (171)
T ss_pred CEEEEEEEEcCCCCcc----cccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHH
Confidence 4689999999875 4 8999999999999999999999999999999999999 9999999998642
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCc
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a 227 (313)
.+.++|++|+.. ++. .|+.+|+ ||+||+||++||++++.++
T Consensus 74 ~~~~i~~~~~~~~-~~~--~t~~e~l-----------------------------------LS~G~~~rl~la~al~~~p 115 (171)
T cd03228 74 LRKNIAYVPQDPF-LFS--GTIRENI-----------------------------------LSGGQRQRIAIARALLRDP 115 (171)
T ss_pred HHhhEEEEcCCch-hcc--chHHHHh-----------------------------------hCHHHHHHHHHHHHHhcCC
Confidence 235889998853 222 3555553 9999999999999999999
Q ss_pred cEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH
Q 021380 228 KVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ 266 (313)
Q Consensus 228 ~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~ 266 (313)
+++++|+|+..||... .+.+.++.+ .+|++|||++++..
T Consensus 116 ~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 116 PILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 9999999999999844 444444433 24799999998753
No 291
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.97 E-value=1.1e-30 Score=262.34 Aligned_cols=191 Identities=14% Similarity=0.137 Sum_probs=152.7
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
-|+++|+++.|++.. ++|+|+||+|++|+++||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 340 ~i~~~~v~f~y~~~~---~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~l 413 (592)
T PRK10790 340 RIDIDNVSFAYRDDN---LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP---LTEGEIRLDGRPLSSLSHSVL 413 (592)
T ss_pred eEEEEEEEEEeCCCC---ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEhhhCCHHHH
Confidence 489999999997421 29999999999999999999999999999999999999 9999999999753
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCcc----CCCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~LSgGekq 215 (313)
.+.++|++|+++.+. -|+++|+.++. ..+.+++.++++.++ .+.+.. ...|||||||
T Consensus 414 ~~~i~~v~Q~~~lF~---~Ti~~NI~~~~-------~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQ 483 (592)
T PRK10790 414 RQGVAMVQQDPVVLA---DTFLANVTLGR-------DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQ 483 (592)
T ss_pred HhheEEEccCCcccc---chHHHHHHhCC-------CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHH
Confidence 356999999976544 49999998752 123445556655554 122332 2379999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||||++.+++++++|||+.-||++. .+.+.++.. .+|+|||+++.+.. +++ |++++.|+.+++.+
T Consensus 484 RialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 484 LLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999944 444444432 35799999988776 555 89999999988753
No 292
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.4e-30 Score=261.16 Aligned_cols=192 Identities=15% Similarity=0.043 Sum_probs=145.6
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEe
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~ 156 (313)
||+++||+++|+++. +|+||||+|.+|+++||+||||||||||||+|+|+++ |++|+|.+++.. .++|++
T Consensus 1 ~i~i~nls~~~g~~~----~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~---pd~G~I~~~~~~---~i~~~~ 70 (638)
T PRK10636 1 MIVFSSLQIRRGVRV----LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS---ADGGSYTFPGNW---QLAWVN 70 (638)
T ss_pred CEEEEEEEEEeCCce----eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCCC---EEEEEe
Confidence 589999999999877 9999999999999999999999999999999999999 999999998743 388999
Q ss_pred ccCCCCCcccCCcccCHHHH-----------------------HHhc----CCCCCccHHHHHHHHHHhhcC---CCccC
Q 021380 157 MDGFHLYLSQLDAMEDPKEA-----------------------HARR----GAPWTFNPLLLLNCLKNLRNQ---GSVYA 206 (313)
Q Consensus 157 q~~~~~~~~~ltv~e~l~~~-----------------------~~~~----~~~~~~~~~~~~~~l~~l~~~---~~~~~ 206 (313)
|+..... .++.+++... .... .........++..+|+.++.. .++++
T Consensus 71 q~~~~~~---~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~ 147 (638)
T PRK10636 71 QETPALP---QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPV 147 (638)
T ss_pred cCCCCCC---CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCch
Confidence 8643211 2333322110 0000 001112234677888888853 46788
Q ss_pred CCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhc-
Q 021380 207 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHIS- 274 (313)
Q Consensus 207 ~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~- 274 (313)
.+|||||||||+||++++.++++|++|+|+..||....+.|.+++. .+|+||||++++.. +++ |+++.
T Consensus 148 ~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~ 227 (638)
T PRK10636 148 SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEY 227 (638)
T ss_pred hhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEe
Confidence 8999999999999999999999999999999999966666665543 35799999999876 444 66653
Q ss_pred cCChhHH
Q 021380 275 TGKPPDV 281 (313)
Q Consensus 275 ~G~~~e~ 281 (313)
.|.....
T Consensus 228 ~g~~~~~ 234 (638)
T PRK10636 228 TGNYSSF 234 (638)
T ss_pred cCCHHHH
Confidence 4654443
No 293
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.4e-31 Score=260.22 Aligned_cols=197 Identities=13% Similarity=0.103 Sum_probs=150.7
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
++++++|++.. . +++|+||+|.+|+++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 256 ~~l~~~~~~~~----~----~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~---p~~G~i~~~g~~~~~~~~~~ 324 (501)
T PRK11288 256 VRLRLDGLKGP----G----LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR---RTAGQVYLDGKPIDIRSPRD 324 (501)
T ss_pred cEEEEeccccC----C----cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc---CCCceEEECCEECCCCCHHH
Confidence 46899999832 3 8999999999999999999999999999999999999 9999999988542
Q ss_pred --CCeEEEEeccCC-CCCcccCCcccCHHHHHHhcCC------CCCccHHHHHHHHHHhhc---CCCccCCCCCccCCCc
Q 021380 149 --PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGA------PWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDP 216 (313)
Q Consensus 149 --~~~i~~v~q~~~-~~~~~~ltv~e~l~~~~~~~~~------~~~~~~~~~~~~l~~l~~---~~~~~~~~LSgGekqR 216 (313)
...++|++|+.. ....+.+|+.+|+.+....... ......+.+.++++.++. ..++++.+||||||||
T Consensus 325 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 404 (501)
T PRK11288 325 AIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQK 404 (501)
T ss_pred HHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHH
Confidence 135899999852 1112247999998764321110 111223456788888875 2467788999999999
Q ss_pred chhhhhcccCccEEEEcCcccccChhhHHHHH----Hhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS----SMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 217 v~la~al~~~a~~li~d~~~llLDE~~~~~l~----~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
++||++++.++++|++|+|+..||....+.+. ++.+ .+|++|||++++.. |++ |++++.|.+++..
T Consensus 405 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 405 AILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred HHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 99999999999999999999999995444443 3333 25799999999876 444 7888888776654
Q ss_pred H
Q 021380 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 485 ~ 485 (501)
T PRK11288 485 E 485 (501)
T ss_pred H
Confidence 3
No 294
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.97 E-value=1.1e-30 Score=266.65 Aligned_cols=194 Identities=14% Similarity=0.117 Sum_probs=153.0
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
-|+++||+++|++.. .++|+|+||+|++|+.+||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 463 ~I~~~~vsf~Y~~~~--~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~l~~~~~~~l 537 (694)
T TIGR03375 463 EIEFRNVSFAYPGQE--TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ---PTEGSVLLDGVDIRQIDPADL 537 (694)
T ss_pred eEEEEEEEEEeCCCC--ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCCHHHH
Confidence 599999999996421 128999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCcc----CCCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~LSgGekq 215 (313)
++.++|++|+++.+. -|++||+.+.. + ..+.+++.+.++..+ .+.+.. ...|||||||
T Consensus 538 r~~i~~v~Q~~~lf~---~TI~eNi~~~~-----~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQ 608 (694)
T TIGR03375 538 RRNIGYVPQDPRLFY---GTLRDNIALGA-----P-YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQ 608 (694)
T ss_pred HhccEEECCChhhhh---hhHHHHHhCCC-----C-CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHH
Confidence 346999999976443 59999997641 1 223445555555443 222332 3479999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||+++..+++++++|+++.-||++. .+.+.++.+ ..|+|||+++.+.. |++ |++++.|+.+++..
T Consensus 609 RlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 609 AVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 9999999999999999999999999944 444444432 35799999998866 555 99999999888765
Q ss_pred H
Q 021380 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 689 ~ 689 (694)
T TIGR03375 689 A 689 (694)
T ss_pred H
Confidence 4
No 295
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.97 E-value=1.2e-30 Score=256.58 Aligned_cols=185 Identities=16% Similarity=0.005 Sum_probs=139.4
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-CCceeeeCCCCC-----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFDSQVKP----- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-~~G~i~~~~~~~----- 148 (313)
.++|+++|+++.|++.. +|+|+||+|.+|+++||+||||||||||+|+|+|+++ + ++|+|.++|.+.
T Consensus 258 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~---~~~~G~i~~~g~~~~~~~~ 330 (490)
T PRK10938 258 EPRIVLNNGVVSYNDRP----ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP---QGYSNDLTLFGRRRGSGET 330 (490)
T ss_pred CceEEEeceEEEECCee----EEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---cccCCeEEEecccCCCCCC
Confidence 45899999999998766 9999999999999999999999999999999999875 5 699999988542
Q ss_pred ----CCeEEEEeccCCCCCcccCCcccCHHHHHHh----cCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcc
Q 021380 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPV 217 (313)
Q Consensus 149 ----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~----~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv 217 (313)
.+.++|++|+.........++.+++.+.... +........+++.++++.++.. .++++.+||||||||+
T Consensus 331 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv 410 (490)
T PRK10938 331 IWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLA 410 (490)
T ss_pred HHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHH
Confidence 1348999998532222123454444322110 1111111234577888888843 4667789999999999
Q ss_pred hhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc---C-eEEEEcChHHHHH
Q 021380 218 EDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---E-KWFIEVDLDTAMQ 266 (313)
Q Consensus 218 ~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~-~i~vtHd~~~~~~ 266 (313)
+||++++.++++|++|+|+..||.. +.+.|.++.+ . +|++|||++++..
T Consensus 411 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~ 467 (490)
T PRK10938 411 LIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPA 467 (490)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhh
Confidence 9999999999999999999999994 4444444432 2 5799999998854
No 296
>PLN03211 ABC transporter G-25; Provisional
Probab=99.96 E-value=2.3e-30 Score=261.47 Aligned_cols=194 Identities=18% Similarity=0.144 Sum_probs=153.5
Q ss_pred EccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC--CceeeeCCCCC----CCeEE
Q 021380 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--KASSFDSQVKP----PDVAT 153 (313)
Q Consensus 80 v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~--~G~i~~~~~~~----~~~i~ 153 (313)
++|+++.|+++. +|+|+||++++||++||+||||||||||+++|+|+++ |+ +|+|.++|.+. .+.++
T Consensus 71 ~~~l~~~~~~~~----iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~---~~~~sG~I~inG~~~~~~~~~~i~ 143 (659)
T PLN03211 71 ISDETRQIQERT----ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQ---GNNFTGTILANNRKPTKQILKRTG 143 (659)
T ss_pred cccccccCCCCe----eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEEEECCEECchhhccceE
Confidence 678899998877 9999999999999999999999999999999999997 75 89999999653 24589
Q ss_pred EEeccCCCCCcccCCcccCHHHHHHhcCCCC----CccHHHHHHHHHHhhcCC-------CccCCCCCccCCCcchhhhh
Q 021380 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPW----TFNPLLLLNCLKNLRNQG-------SVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 154 ~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~----~~~~~~~~~~l~~l~~~~-------~~~~~~LSgGekqRv~la~a 222 (313)
|++|++..++ .+|+.|++.+....+ .+. ....+++.++++.++... +..+..||||||||++||++
T Consensus 144 yv~Q~~~l~~--~lTV~E~l~~~a~~~-~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~a 220 (659)
T PLN03211 144 FVTQDDILYP--HLTVRETLVFCSLLR-LPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHE 220 (659)
T ss_pred EECcccccCC--cCCHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHH
Confidence 9999965443 489999999865443 121 122345677888887432 33566899999999999999
Q ss_pred cccCccEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcChHH-HHH---HHH----hhhhccCChhHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDT-AMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~-~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++.+++++++|+|+..||. .+.+.|+++.+ .+|+++|+++. +.+ +++ |+++..|+++++..
T Consensus 221 L~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 221 MLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred HHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 9999999999999999999 44555555442 25799999873 443 554 89999998887765
No 297
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.96 E-value=1.3e-30 Score=266.74 Aligned_cols=192 Identities=15% Similarity=0.133 Sum_probs=151.7
Q ss_pred eEEEccceeEccc-cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~-~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
-|+++||+++|++ .. +|+|+||+|++|+.+||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 473 ~I~~~~vsf~y~~~~~----iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~ 545 (708)
T TIGR01193 473 DIVINDVSYSYGYGSN----ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ---ARSGEILLNGFSLKDIDRHT 545 (708)
T ss_pred cEEEEEEEEEcCCCCc----ceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCCcEEEECCEEHHHcCHHH
Confidence 4899999999973 33 9999999999999999999999999999999999999 9999999999762
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCcc----CCCCCccCC
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHGVG 214 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~LSgGek 214 (313)
++.++|++|+++.+. -|++||+.++. ....+.+++.+.++..+ .+.+.. ...||||||
T Consensus 546 lr~~i~~v~Q~~~lf~---gTI~eNi~l~~-----~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQr 617 (708)
T TIGR01193 546 LRQFINYLPQEPYIFS---GSILENLLLGA-----KENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQK 617 (708)
T ss_pred HHHheEEEecCceehh---HHHHHHHhccC-----CCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHH
Confidence 346999999976443 59999997642 11223444455554433 223332 347999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc-CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD-EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~-~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
||++||||++.+++++++|+++.-||.+ +.+.|.++.+ .+|+|||+++.+.. +++ |++++.|+.+++..
T Consensus 618 QRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 618 QRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred HHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999994 4444444322 35799999998766 555 99999999888754
No 298
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.96 E-value=1e-30 Score=227.94 Aligned_cols=166 Identities=16% Similarity=0.077 Sum_probs=129.2
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHH--hcccCCCCceeeeCCCCC-------
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gl--l~~~~p~~G~i~~~~~~~------- 148 (313)
|+++|+++.|++.. +|+|+||++.+|++++|+|+||||||||+++|+|+ ++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---p~~G~i~~~g~~~~~~~~~~ 73 (200)
T cd03217 1 LEIKDLHVSVGGKE----ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYE---VTEGEILFKGEDITDLPPEE 73 (200)
T ss_pred CeEEEEEEEeCCEE----eeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CCccEEEECCEECCcCCHHH
Confidence 46899999998766 99999999999999999999999999999999999 46 9999999998642
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccC
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~ 226 (313)
...++|++|++..++ .+++.+++ ......|||||+||++||++++.+
T Consensus 74 ~~~~~i~~v~q~~~~~~--~~~~~~~l-----------------------------~~~~~~LS~G~~qrv~laral~~~ 122 (200)
T cd03217 74 RARLGIFLAFQYPPEIP--GVKNADFL-----------------------------RYVNEGFSGGEKKRNEILQLLLLE 122 (200)
T ss_pred HhhCcEEEeecChhhcc--CccHHHHH-----------------------------hhccccCCHHHHHHHHHHHHHhcC
Confidence 123889999854322 23333221 112248999999999999999999
Q ss_pred ccEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH----HHH----hhhhccCChhHHH
Q 021380 227 HKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ----RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 227 a~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~----rvi----gr~v~~G~~~e~~ 282 (313)
++++++|+|+..||. .+++.+.++.+ .+|++||+++.+.. |++ |++++.| +.++.
T Consensus 123 p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 123 PDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 999999999999998 44455555433 25799999998762 333 7777777 44443
No 299
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.96 E-value=2.5e-30 Score=256.44 Aligned_cols=170 Identities=16% Similarity=0.175 Sum_probs=135.3
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------- 149 (313)
.|+++||+++|++.. .+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 334 ~I~~~~vsf~Y~~~~---~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~---p~~G~I~i~g~~i~~~~~~lr 407 (529)
T TIGR02868 334 TLELRDLSFGYPGSP---PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD---PLQGEVTLDGVSVSSLQDELR 407 (529)
T ss_pred eEEEEEEEEecCCCC---ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhHHHHHH
Confidence 499999999997532 28999999999999999999999999999999999999 99999999997643
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccC----CCCCccCCCc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGVGDP 216 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~LSgGekqR 216 (313)
+.++|++|+++.+. -|++||+.++. + ..+.+++.++++..+ .+.+..+ ..||||||||
T Consensus 408 ~~i~~V~Q~~~lF~---~TI~eNI~~g~-----~-~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQR 478 (529)
T TIGR02868 408 RRISVFAQDAHLFD---TTVRDNLRLGR-----P-DATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQR 478 (529)
T ss_pred hheEEEccCccccc---ccHHHHHhccC-----C-CCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHH
Confidence 46999999976544 59999998752 2 223455556665544 2233333 3799999999
Q ss_pred chhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcCh
Q 021380 217 VEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDL 261 (313)
Q Consensus 217 v~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~ 261 (313)
++||||++.+++++++||++.-||.+. .+.+.++.. .+|+|||++
T Consensus 479 iaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 479 LALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999999999999999944 444444432 257999974
No 300
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.96 E-value=1.3e-30 Score=260.75 Aligned_cols=193 Identities=15% Similarity=0.112 Sum_probs=153.1
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
.|+++||++.|++.. ..+|+|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 338 ~i~~~~v~f~y~~~~--~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---p~~G~I~i~g~~i~~~~~~~~ 412 (574)
T PRK11160 338 SLTLNNVSFTYPDQP--QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD---PQQGEILLNGQPIADYSEAAL 412 (574)
T ss_pred eEEEEEEEEECCCCC--CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCCHHHH
Confidence 599999999996521 128999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--------CCc----cCCCCCccCCCc
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--------GSV----YAPSFDHGVGDP 216 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--------~~~----~~~~LSgGekqR 216 (313)
++.++|++|+++.+. -|+.||+.++. + ..+.+.+.+.++.++.. .+. ....||||||||
T Consensus 413 r~~i~~v~Q~~~lf~---~ti~~Ni~~~~-----~-~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqR 483 (574)
T PRK11160 413 RQAISVVSQRVHLFS---ATLRDNLLLAA-----P-NASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRR 483 (574)
T ss_pred HhheeEEcccchhhc---ccHHHHhhcCC-----C-ccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHH
Confidence 245999999975443 59999987642 2 23445566666666522 122 234799999999
Q ss_pred chhhhhcccCccEEEEcCcccccChhhHH----HHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWK----DVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 217 v~la~al~~~a~~li~d~~~llLDE~~~~----~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
++||++++.+++++++|+++..||++..+ .+.++.+ .+|+|||+++.+.. +++ |++++.|+.+++..
T Consensus 484 ialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 484 LGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999999999994444 4444432 25799999998876 554 89999999888764
No 301
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.9e-30 Score=244.80 Aligned_cols=191 Identities=14% Similarity=0.098 Sum_probs=152.8
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
.|+++||+++|+++. ++|+++||+|++||.|||+|+|||||||++|+|.+++ -++|+|.++|++.
T Consensus 351 ~I~F~dV~f~y~~k~---~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~----d~sG~I~IdG~dik~~~~~Sl 423 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKR---KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF----DYSGSILIDGQDIKEVSLESL 423 (591)
T ss_pred cEEEEeeEEEeCCCC---ceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh----ccCCcEEECCeeHhhhChHHh
Confidence 499999999998654 3999999999999999999999999999999999999 6899999999873
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCC----ccCCCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGS----VYAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~----~~~~~LSgGekq 215 (313)
++.|||+|||...+. -|++.|+.++ .+.. ..+++.+..++.+. +-. ..-..|||||||
T Consensus 424 R~~Ig~VPQd~~LFn---dTIl~NI~YG-----n~sa-s~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQ 494 (591)
T KOG0057|consen 424 RQSIGVVPQDSVLFN---DTILYNIKYG-----NPSA-SDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQ 494 (591)
T ss_pred hhheeEeCCcccccc---hhHHHHhhcC-----CCCc-CHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHH
Confidence 356999999975443 4899998764 3332 33445556565552 211 233489999999
Q ss_pred cchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
||+++++++.+|.++++|+++.-||- ++++.+.+... ++|||-|+++++.. +++ |++.+.|+-.+++.
T Consensus 495 rvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 495 RVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 99999999999999999999999997 44555555332 25799999999988 665 89999999888765
No 302
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.96 E-value=7.1e-31 Score=225.25 Aligned_cols=153 Identities=17% Similarity=0.163 Sum_probs=115.8
Q ss_pred EEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEecc
Q 021380 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMD 158 (313)
Q Consensus 79 ~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~ 158 (313)
+++||++.|++.. +|+++||++.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+...
T Consensus 1 ~~~~l~~~~~~~~----~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~~~-------- 65 (180)
T cd03214 1 EVENLSVGYGGRT----VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLAS-------- 65 (180)
T ss_pred CeeEEEEEECCee----eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCc--------
Confidence 4689999998765 9999999999999999999999999999999999999 999999988743210
Q ss_pred CCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEEEEcCcc
Q 021380 159 GFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (313)
Q Consensus 159 ~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~ 236 (313)
. .. ......+.+. .++++.++. ..+..+..||+||+||++||++++.+++++++|+|+
T Consensus 66 -~--~~--~~~~~~i~~~---------------~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~ 125 (180)
T cd03214 66 -L--SP--KELARKIAYV---------------PQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPT 125 (180)
T ss_pred -C--CH--HHHHHHHhHH---------------HHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 0 00 0000011111 115555553 235667899999999999999999999999999999
Q ss_pred cccChh----hHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 237 LFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 237 llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
..||.. +.+.+.++.+ .+|++|||++++..
T Consensus 126 ~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 126 SHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 999983 4444444433 24799999998754
No 303
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.96 E-value=3.1e-30 Score=258.83 Aligned_cols=191 Identities=17% Similarity=0.183 Sum_probs=149.9
Q ss_pred eEEEccceeEccc-cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~-~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
.|+++||+++|++ .. +|+|+||++++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 334 ~I~~~~vsf~y~~~~~----iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---p~~G~I~i~g~~i~~~~~~~ 406 (588)
T PRK13657 334 AVEFDDVSFSYDNSRQ----GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD---PQSGRILIDGTDIRTVTRAS 406 (588)
T ss_pred eEEEEEEEEEeCCCCc----eecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEhhhCCHHH
Confidence 5999999999975 34 8999999999999999999999999999999999999 9999999999653
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCcc----CCCCCccCC
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHGVG 214 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~LSgGek 214 (313)
.+.++|++|+++.+. -|+++|+.++. + ..+.+.+.+.++.++ .+.+.. ...||||||
T Consensus 407 ~r~~i~~v~Q~~~lf~---~Ti~~Ni~~~~-----~-~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~ 477 (588)
T PRK13657 407 LRRNIAVVFQDAGLFN---RSIEDNIRVGR-----P-DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGER 477 (588)
T ss_pred HHhheEEEecCccccc---ccHHHHHhcCC-----C-CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHH
Confidence 256999999975443 59999997641 1 122334444444433 222322 337999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~ 282 (313)
||++|||+++.+++++++|+++.-||++ +.+.+.++.+ .+|+|||+.+.+.. +++ |++++.|+.+++.
T Consensus 478 QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 478 QRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999994 4444444432 35799999988766 555 8888899887775
Q ss_pred H
Q 021380 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
+
T Consensus 558 ~ 558 (588)
T PRK13657 558 A 558 (588)
T ss_pred H
Confidence 3
No 304
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.96 E-value=3e-30 Score=257.97 Aligned_cols=194 Identities=14% Similarity=0.096 Sum_probs=152.1
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
-|+++||+++|++.. .++|+|+||++++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 330 ~i~~~~v~f~y~~~~--~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---~~~G~I~i~g~~i~~~~~~~~ 404 (571)
T TIGR02203 330 DVEFRNVTFRYPGRD--RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE---PDSGQILLDGHDLADYTLASL 404 (571)
T ss_pred eEEEEEEEEEcCCCC--CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEeHHhcCHHHH
Confidence 499999999996521 138999999999999999999999999999999999999 9999999999652
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccC----CCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~LSgGekq 215 (313)
.+.++|++|+++.+. -|+++|+.++ .++..+.+++.++++.++ .+.+..+ ..|||||||
T Consensus 405 ~~~i~~v~Q~~~lf~---~Ti~~Ni~~~-----~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQ 476 (571)
T TIGR02203 405 RRQVALVSQDVVLFN---DTIANNIAYG-----RTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQ 476 (571)
T ss_pred HhhceEEccCccccc---ccHHHHHhcC-----CCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHH
Confidence 346999999976443 5999998754 121334555666666544 2233333 379999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++|||+++.+++++++|||+.-||++. .+.|.+..+ .+|+|||+.+.... +++ |++++.|+.+++..
T Consensus 477 RiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 477 RLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 9999999999999999999999999944 444444432 35799999988765 555 88888998887753
No 305
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.96 E-value=2.2e-30 Score=255.72 Aligned_cols=195 Identities=19% Similarity=0.166 Sum_probs=148.6
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
.++|+++|+++ . +|+++||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 266 ~~~l~~~~l~~-----~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~ 333 (510)
T PRK15439 266 APVLTVEDLTG-----E----GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP---ARGGRIMLNGKEINALSTA 333 (510)
T ss_pred CceEEEeCCCC-----C----CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEECCCCCHH
Confidence 45799999983 2 6999999999999999999999999999999999999 9999999988542
Q ss_pred ---CCeEEEEeccCC--CCCcccCCcccCHHHHHHh-cCC--CCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcc
Q 021380 149 ---PDVATVLPMDGF--HLYLSQLDAMEDPKEAHAR-RGA--PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPV 217 (313)
Q Consensus 149 ---~~~i~~v~q~~~--~~~~~~ltv~e~l~~~~~~-~~~--~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv 217 (313)
...++|++|+.. .++ +.+|+.+|+...... ... ......+.+.++++.++.. .++++.+||||||||+
T Consensus 334 ~~~~~~i~~v~q~~~~~~l~-~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl 412 (510)
T PRK15439 334 QRLARGLVYLPEDRQSSGLY-LDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKV 412 (510)
T ss_pred HHHhCCcEECCCChhhCCcc-CCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHH
Confidence 135899999741 122 247888887542110 111 1111234567888888853 4677889999999999
Q ss_pred hhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 218 EDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 218 ~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
+||++++.++++|++|+|+..||.. +++.|.++.+ .+|++|||++++.. |++ |+++..|+++++.
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN 491 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence 9999999999999999999999994 3444444432 25799999999886 444 8888777776544
No 306
>PRK13409 putative ATPase RIL; Provisional
Probab=99.96 E-value=4e-30 Score=256.71 Aligned_cols=183 Identities=14% Similarity=0.113 Sum_probs=145.9
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEE
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~ 154 (313)
.++|+++|+++.|++. .|+++||+|.+||++||+||||||||||+|+|+|+++ |++|+|.++ ..++|
T Consensus 338 ~~~l~~~~ls~~~~~~-----~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~---p~~G~I~~~-----~~i~y 404 (590)
T PRK13409 338 ETLVEYPDLTKKLGDF-----SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK---PDEGEVDPE-----LKISY 404 (590)
T ss_pred ceEEEEcceEEEECCE-----EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEe-----eeEEE
Confidence 4589999999999763 5899999999999999999999999999999999999 999999886 24899
Q ss_pred EeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEEEE
Q 021380 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (313)
Q Consensus 155 v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~li~ 232 (313)
++|+.... ..+|+.+++.+....++ ......++++.++. ..++++.+|||||||||+||++++.++++|++
T Consensus 405 ~~Q~~~~~--~~~tv~e~l~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLL 477 (590)
T PRK13409 405 KPQYIKPD--YDGTVEDLLRSITDDLG-----SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLL 477 (590)
T ss_pred ecccccCC--CCCcHHHHHHHHhhhcC-----hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99985432 35899999876532221 12345678888874 35778889999999999999999999999999
Q ss_pred cCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH---hhhhccCC
Q 021380 233 DGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL---KRHISTGK 277 (313)
Q Consensus 233 d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi---gr~v~~G~ 277 (313)
|+|+..||. .+.+.|+++.+ .+|+||||++++.. |++ |+....|.
T Consensus 478 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~~~~~~g~ 536 (590)
T PRK13409 478 DEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEGEPGKHGH 536 (590)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCcceeeee
Confidence 999999999 34444555432 25799999999876 444 55544443
No 307
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.96 E-value=6.1e-31 Score=262.87 Aligned_cols=192 Identities=15% Similarity=0.133 Sum_probs=152.9
Q ss_pred eEEEccceeEcc-ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~-~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
-|+++||+++|+ ++. +|+|+||++++|+++||+||||||||||++.|.++++ |++|+|.++|.+.
T Consensus 328 ~I~f~~vsf~y~~~~~----vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~---~~~G~I~idg~dI~~i~~~~ 400 (567)
T COG1132 328 SIEFENVSFSYPGKKP----VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD---PTSGEILIDGIDIRDISLDS 400 (567)
T ss_pred eEEEEEEEEEcCCCCc----cccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCEehhhcCHHH
Confidence 499999999998 456 9999999999999999999999999999999999999 9999999998763
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHh---------hcCCCccCC----CCCccCC
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNL---------RNQGSVYAP----SFDHGVG 214 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l---------~~~~~~~~~----~LSgGek 214 (313)
++.+++++||++.+. -|+.+|+.++.. . ...+++.+.++.. ..+.+..++ .||||||
T Consensus 401 lr~~I~~V~Qd~~LF~---~TI~~NI~~g~~-----~-at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQr 471 (567)
T COG1132 401 LRKRIGIVSQDPLLFS---GTIRENIALGRP-----D-ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQR 471 (567)
T ss_pred HHHhccEEcccceeec---ccHHHHHhcCCC-----C-CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHH
Confidence 356999999976443 599999987632 1 2223344443333 223444443 8999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChhhHHHHHHhh----c--CeEEEEcChHHHHH--HHH----hhhhccCChhHHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF----D--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~----~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~ 282 (313)
||++||||++.+|+++++|+++.-+|.+.-..+.+.. + .+++|+|.+..+.. +++ |++++.|+.+++.
T Consensus 472 QrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl 551 (567)
T COG1132 472 QRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELL 551 (567)
T ss_pred HHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999984433333333 2 35789999998887 555 9999999999987
Q ss_pred HH
Q 021380 283 KW 284 (313)
Q Consensus 283 ~~ 284 (313)
..
T Consensus 552 ~~ 553 (567)
T COG1132 552 AK 553 (567)
T ss_pred Hc
Confidence 64
No 308
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.96 E-value=4.2e-30 Score=260.01 Aligned_cols=202 Identities=15% Similarity=0.108 Sum_probs=158.6
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
++|+++|+++.|++......+|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~i~~~~~~~ 79 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK---PTSGTYRVAGQDVATLDADA 79 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEcCcCCHHH
Confidence 479999999999642111238999999999999999999999999999999999999 9999999998652
Q ss_pred -----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhh
Q 021380 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 149 -----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~ 221 (313)
.+.++|++|+...++ ++|+.+|+.+.....+.+.....+++.++++.++. ..+..+.+||+||+||++||+
T Consensus 80 ~~~~~~~~i~~v~q~~~l~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAr 157 (648)
T PRK10535 80 LAQLRREHFGFIFQRYHLLS--HLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIAR 157 (648)
T ss_pred HHHHHhccEEEEeCCcccCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHH
Confidence 235899999964333 47999999876544443333334567788888874 346677899999999999999
Q ss_pred hcccCccEEEEcCcccccChhh----HHHHHHhhc---CeEEEEcChHHHHH--HHH----hhhhccCChhHHH
Q 021380 222 LVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD---EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 222 al~~~a~~li~d~~~llLDE~~----~~~l~~l~~---~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~ 282 (313)
+++.+++++++|+|+..||... .+.+.++.+ .++++||+++.+.. |++ |++++.|++++..
T Consensus 158 aL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 158 ALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 9999999999999999999944 344444332 24799999998755 444 8888888877654
No 309
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.1e-30 Score=246.43 Aligned_cols=193 Identities=16% Similarity=0.107 Sum_probs=156.6
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
.++++||+++|.+.. .++|+|+||++++||.++|+|++|||||||+++|+|.+. |++|+|.++|.+.
T Consensus 336 ~l~~~~vsF~y~~~~--~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~---~~~G~i~~~g~~~~~l~~~~~ 410 (573)
T COG4987 336 ALELRNVSFTYPGQQ--TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD---PQQGSITLNGVEIASLDEQAL 410 (573)
T ss_pred eeeeccceeecCCCc--cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC---CCCCeeeECCcChhhCChhhH
Confidence 799999999998754 349999999999999999999999999999999999999 9999999999663
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCCc----cCCCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~~----~~~~LSgGekq 215 (313)
.+.++++.|.... +. -|+++|+... .+ ....+.+.++++.++. +.+. .-..|||||+|
T Consensus 411 ~e~i~vl~Qr~hl-F~--~Tlr~NL~lA-----~~-~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~r 481 (573)
T COG4987 411 RETISVLTQRVHL-FS--GTLRDNLRLA-----NP-DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERR 481 (573)
T ss_pred HHHHhhhccchHH-HH--HHHHHHHhhc-----CC-CCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHH
Confidence 2358889998643 32 4899998764 22 2345566777777662 1222 23489999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||+++.+++.++++|||+-.||.. +++.+.+.+. ..+||||++..+.+ ||+ |+++++|+..++..
T Consensus 482 RLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 482 RLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred HHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhc
Confidence 999999999999999999999999984 4444444443 35799999998888 766 99999999999876
No 310
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.96 E-value=5.3e-30 Score=227.17 Aligned_cols=178 Identities=19% Similarity=0.223 Sum_probs=136.3
Q ss_pred eeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---CCeEEEEeccCCCCCcccCCcccCHHHHHH
Q 021380 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (313)
Q Consensus 102 ~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~ 178 (313)
|+|++|+++||+|+||||||||+++|+|+++ |++|+|.++|.+. .+.++|++|++...+...+|+.+|+.+...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP---PAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 5789999999999999999999999999999 9999999999753 346999999864332223688888876422
Q ss_pred hc-C---CCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccCh----hhHHHHH
Q 021380 179 RR-G---APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVS 248 (313)
Q Consensus 179 ~~-~---~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~ 248 (313)
.. + .+.......+.++++.++.. .+.++.+||+||+||++|+++++.+++++++|+|+..||. .+.+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~ 157 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFI 157 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 11 1 11122344577788888743 4667789999999999999999999999999999999999 3444444
Q ss_pred Hhhc---CeEEEEcChHHHHH---HHH---hhhhccCChhHHH
Q 021380 249 SMFD---EKWFIEVDLDTAMQ---RVL---KRHISTGKPPDVA 282 (313)
Q Consensus 249 ~l~~---~~i~vtHd~~~~~~---rvi---gr~v~~G~~~e~~ 282 (313)
++.+ .+|++|||++++.. +++ |+++..|++.++.
T Consensus 158 ~~~~~~~tvii~sH~~~~~~~~~d~i~~l~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 158 ELAGAGTAILMTTHDLAQAMATCDRVVLLNGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHcCCEEEEEeCCHHHHHHhCCEEEEECCEEEeecCHHHhc
Confidence 4433 25799999998765 443 7888888777653
No 311
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.96 E-value=1.1e-29 Score=224.31 Aligned_cols=171 Identities=10% Similarity=0.018 Sum_probs=129.8
Q ss_pred EEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC----------
Q 021380 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---------- 148 (313)
Q Consensus 79 ~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~---------- 148 (313)
.+.|+.+.|++.. .+|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~~~~~~~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~ 75 (218)
T cd03290 2 QVTNGYFSWGSGL---ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKNESEPSFEATRS 75 (218)
T ss_pred eeeeeEEecCCCC---cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCcccccccccccch
Confidence 4788999997432 28999999999999999999999999999999999999 9999999988542
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc-------------CCCccCCCCCccC
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-------------QGSVYAPSFDHGV 213 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~-------------~~~~~~~~LSgGe 213 (313)
.+.++|++|++.. +. .|+.+|+.+... . ......++++.++. ..+.++..|||||
T Consensus 76 ~~~~~i~~~~q~~~~-~~--~t~~~nl~~~~~---~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~ 145 (218)
T cd03290 76 RNRYSVAYAAQKPWL-LN--ATVEENITFGSP---F----NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQ 145 (218)
T ss_pred hhcceEEEEcCCCcc-cc--ccHHHHHhhcCc---C----CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHH
Confidence 1358999999643 32 689998865421 1 11222333333321 1234677999999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccChhhHHHHHH------hhc---CeEEEEcChHHHH
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS------MFD---EKWFIEVDLDTAM 265 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~------l~~---~~i~vtHd~~~~~ 265 (313)
+||++||++++.+++++++|+|+..||....+.+.+ +.+ .+|++|||.+.+.
T Consensus 146 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~ 206 (218)
T cd03290 146 RQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP 206 (218)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh
Confidence 999999999999999999999999999954443322 222 2479999998763
No 312
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.3e-30 Score=252.61 Aligned_cols=194 Identities=12% Similarity=0.096 Sum_probs=142.9
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~----- 149 (313)
.++|+++|+++.| .. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 248 ~~~i~~~~l~~~~--~~----~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~ 318 (491)
T PRK10982 248 EVILEVRNLTSLR--QP----SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE---KSAGTITLHGKKINNHNAN 318 (491)
T ss_pred CcEEEEeCccccc--Cc----ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc---CCccEEEECCEECCCCCHH
Confidence 3579999999984 34 8999999999999999999999999999999999999 99999999985432
Q ss_pred ----CeEEEEeccCC--CCCcccCCcccC-----HHHHHHhcCC-CCCccHHHHHHHHHHhhc---CCCccCCCCCccCC
Q 021380 150 ----DVATVLPMDGF--HLYLSQLDAMED-----PKEAHARRGA-PWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVG 214 (313)
Q Consensus 150 ----~~i~~v~q~~~--~~~~~~ltv~e~-----l~~~~~~~~~-~~~~~~~~~~~~l~~l~~---~~~~~~~~LSgGek 214 (313)
..++|++|+.. ..+ +.+++.+| +.+....++. ........+.++++.++. ..++++.+||||||
T Consensus 319 ~~~~~~i~~~~q~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~ 397 (491)
T PRK10982 319 EAINHGFALVTEERRSTGIY-AYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQ 397 (491)
T ss_pred HHHHCCCEEcCCchhhCCcc-cCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHH
Confidence 23889999842 112 23555444 3221111121 111223456777888764 24678889999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCCh
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKP 278 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~ 278 (313)
||++||++++.++++|++|+|+..||... ++.+.++.+ .+|++|||++++.. |++ |+++..+++
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~ 475 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDT 475 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcc
Confidence 99999999999999999999999999944 344444332 24799999999876 444 666654443
No 313
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.96 E-value=6.9e-30 Score=255.72 Aligned_cols=194 Identities=18% Similarity=0.225 Sum_probs=150.5
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
.|+++||++.|++.. ...+|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 337 ~i~~~~v~f~y~~~~-~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~---p~~G~I~i~g~~i~~~~~~~~ 412 (576)
T TIGR02204 337 EIEFEQVNFAYPARP-DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD---PQSGRILLDGVDLRQLDPAEL 412 (576)
T ss_pred eEEEEEEEEECCCCC-CCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhcCHHHH
Confidence 589999999996421 1238999999999999999999999999999999999999 9999999999652
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCc----cCCCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~LSgGekq 215 (313)
.+.++|++|+++.+. .|+++|+.++ .+ ..+.+++.+.++.++ .+.+. ....|||||||
T Consensus 413 ~~~i~~~~Q~~~lf~---~Ti~~Ni~~~-----~~-~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Q 483 (576)
T TIGR02204 413 RARMALVPQDPVLFA---ASVMENIRYG-----RP-DATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQ 483 (576)
T ss_pred HHhceEEccCCcccc---ccHHHHHhcC-----CC-CCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHH
Confidence 245999999976443 5999998764 12 123344555555443 12232 23379999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|+++|+++..+++++++|+++.-+|+.. .+.+.++.+ .+|+|||+.+.... |++ |++++.|+.+++.+
T Consensus 484 rl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 484 RIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIA 563 (576)
T ss_pred HHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHH
Confidence 9999999999999999999999999944 344444432 35799999988766 555 89999999877644
No 314
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.96 E-value=1.3e-29 Score=214.09 Aligned_cols=140 Identities=17% Similarity=0.210 Sum_probs=107.9
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEec
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q 157 (313)
|+++|+++.|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+...
T Consensus 1 l~~~~l~~~~~~~~----vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~------- 66 (163)
T cd03216 1 LELRGITKRFGGVK----ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSF------- 66 (163)
T ss_pred CEEEEEEEEECCeE----EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCc-------
Confidence 46899999998766 9999999999999999999999999999999999999 999999988743210
Q ss_pred cCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCccc
Q 021380 158 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 237 (313)
Q Consensus 158 ~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~l 237 (313)
.+..+ .. . ..++ ++++||+||+||+++|++++.+++++++|+|+.
T Consensus 67 ---------~~~~~---~~-~-----------------~~i~-----~~~qLS~G~~qrl~laral~~~p~illlDEP~~ 111 (163)
T cd03216 67 ---------ASPRD---AR-R-----------------AGIA-----MVYQLSVGERQMVEIARALARNARLLILDEPTA 111 (163)
T ss_pred ---------CCHHH---HH-h-----------------cCeE-----EEEecCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 00000 00 0 0000 011199999999999999999999999999999
Q ss_pred ccChh----hHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 238 FLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 238 lLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
.||.. +++.++++.+ .+|++|||++.+..
T Consensus 112 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 112 ALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99994 4444444432 24799999987654
No 315
>PLN03073 ABC transporter F family; Provisional
Probab=99.96 E-value=3.9e-29 Score=254.08 Aligned_cols=190 Identities=15% Similarity=0.119 Sum_probs=147.2
Q ss_pred CCeEEEccceeEccc-cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEE
Q 021380 75 IPVVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 153 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~-~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~ 153 (313)
.++|+++||++.|++ .. +|+|+||+|.+|+++||+||||||||||+|+|+|+++ |++|+|.+++. ..++
T Consensus 506 ~~~L~~~~ls~~y~~~~~----il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~---p~~G~I~~~~~---~~ig 575 (718)
T PLN03073 506 PPIISFSDASFGYPGGPL----LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ---PSSGTVFRSAK---VRMA 575 (718)
T ss_pred CceEEEEeeEEEeCCCCe----eEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCceEEECCc---eeEE
Confidence 468999999999964 44 8999999999999999999999999999999999999 99999998753 3599
Q ss_pred EEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhcccCccEE
Q 021380 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 154 ~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~a~~l 230 (313)
|++|+.. . .+++.++........ .+ ....+.+..+|+.++.. .++++..||||||||++||++++.++++|
T Consensus 576 yv~Q~~~--~--~l~~~~~~~~~~~~~-~~-~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lL 649 (718)
T PLN03073 576 VFSQHHV--D--GLDLSSNPLLYMMRC-FP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIL 649 (718)
T ss_pred EEecccc--c--cCCcchhHHHHHHHh-cC-CCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEE
Confidence 9999842 1 245555543322111 11 12345678889988853 36678899999999999999999999999
Q ss_pred EEcCcccccChhhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhh-ccCChhH
Q 021380 231 IVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHI-STGKPPD 280 (313)
Q Consensus 231 i~d~~~llLDE~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v-~~G~~~e 280 (313)
++|+|+..||....+.+.+.+. .+|+||||++++.. |++ |+++ ..|...+
T Consensus 650 LLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~ 711 (718)
T PLN03073 650 LLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHD 711 (718)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 9999999999955555544432 35799999999876 443 6666 4566544
No 316
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=4.7e-30 Score=219.12 Aligned_cols=195 Identities=15% Similarity=0.153 Sum_probs=153.8
Q ss_pred eEEEccceeEccc-cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC------
Q 021380 77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~-~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------ 149 (313)
|+++.|+.+.|.. .....++|+++|++|.+|+++.|+|.||||||||++.|+|.+. |++|.|.++|.+..
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~---~t~G~I~Idg~dVtk~~~~~ 77 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK---PTSGQILIDGVDVTKKSVAK 77 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc---cCCceEEECceecccCCHHH
Confidence 4678888888853 2334559999999999999999999999999999999999999 99999999998743
Q ss_pred --CeEEEEeccCCCCCcccCCcccCHHHHHHh---cCCCCCc---cHHHHHHHHHHhhc----CCCccCCCCCccCCCcc
Q 021380 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHAR---RGAPWTF---NPLLLLNCLKNLRN----QGSVYAPSFDHGVGDPV 217 (313)
Q Consensus 150 --~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~---~~~~~~~---~~~~~~~~l~~l~~----~~~~~~~~LSgGekqRv 217 (313)
..++-||||+..-..+.+|+.||+..+... ++..... ..+.+.+.+..++. ..+.++.-|||||||-+
T Consensus 78 RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQal 157 (263)
T COG1101 78 RANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQAL 157 (263)
T ss_pred HhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHH
Confidence 236678999876666679999999887543 2222211 22334555666653 34567889999999999
Q ss_pred hhhhhcccCccEEEEcCcccccChhhHHHHHHhhcC--------eEEEEcChHHHHH---HHH----hhhhc
Q 021380 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KWFIEVDLDTAMQ---RVL----KRHIS 274 (313)
Q Consensus 218 ~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~--------~i~vtHd~~~~~~---rvi----gr~v~ 274 (313)
+++.|.+.++++|++|+-+.-||+..-+.+.++-++ .+||||+++.+.. |.+ |+++.
T Consensus 158 sL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~Ivl 229 (263)
T COG1101 158 SLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVL 229 (263)
T ss_pred HHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEE
Confidence 999999999999999999999999666555555433 4799999999988 666 88775
No 317
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.96 E-value=1.7e-29 Score=253.18 Aligned_cols=191 Identities=16% Similarity=0.130 Sum_probs=147.8
Q ss_pred eEEEccceeEccc-cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~-~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
.|+++||++.|++ .. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 334 ~i~~~~v~~~y~~~~~----~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~ 406 (585)
T TIGR01192 334 AVEFRHITFEFANSSQ----GVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD---PTVGQILIDGIDINTVTRES 406 (585)
T ss_pred eEEEEEEEEECCCCCc----cccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC---CCCCEEEECCEEhhhCCHHH
Confidence 5999999999975 34 8999999999999999999999999999999999999 9999999998653
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCC----CccCCCCCccCC
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQG----SVYAPSFDHGVG 214 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~----~~~~~~LSgGek 214 (313)
.+.++|++|+++.+. .|+++|+.++. +. ...+.+.+.++..+ .+. ......||||||
T Consensus 407 ~~~~i~~v~q~~~lf~---~ti~~Ni~~~~-----~~-~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~ 477 (585)
T TIGR01192 407 LRKSIATVFQDAGLFN---RSIRENIRLGR-----EG-ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGER 477 (585)
T ss_pred HHhheEEEccCCccCc---ccHHHHHhcCC-----CC-CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHH
Confidence 246999999975443 59999987642 11 12223333332221 111 234458999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChhhHHHH----HHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV----SSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~~~~~l----~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~ 282 (313)
||++||++++.+++++++|+++..||.+..+.+ .++.. .+|+|||+++.+.. +++ |++++.|+.+++.
T Consensus 478 qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 557 (585)
T TIGR01192 478 QRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELI 557 (585)
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999544444 33322 25799999998865 555 8888999887775
Q ss_pred H
Q 021380 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 558 ~ 558 (585)
T TIGR01192 558 Q 558 (585)
T ss_pred H
Confidence 4
No 318
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=5.4e-29 Score=243.71 Aligned_cols=180 Identities=13% Similarity=0.038 Sum_probs=143.9
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEE
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~ 154 (313)
|.+|+++|+++.|+++. +|+++||+|.+|+++||||+||||||||||+|+|.+. |++|+|...+. .+++|
T Consensus 1 m~~i~~~~ls~~~g~~~----l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~---~~~G~i~~~~~---~~v~~ 70 (530)
T COG0488 1 MSMITLENLSLAYGDRP----LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE---PDSGEVTRPKG---LRVGY 70 (530)
T ss_pred CceEEEeeeEEeeCCce----eecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc---CCCCeEeecCC---ceEEE
Confidence 56899999999999988 9999999999999999999999999999999999999 99999988653 34999
Q ss_pred EeccCCCCCcccCCcccCHHHHHHh-----------cC-------------------CCCCccHHHHHHHHHHhhcCC-C
Q 021380 155 LPMDGFHLYLSQLDAMEDPKEAHAR-----------RG-------------------APWTFNPLLLLNCLKNLRNQG-S 203 (313)
Q Consensus 155 v~q~~~~~~~~~ltv~e~l~~~~~~-----------~~-------------------~~~~~~~~~~~~~l~~l~~~~-~ 203 (313)
+.|+..... ..|+.+.+...... +. ...-....++..+|..++... +
T Consensus 71 l~Q~~~~~~--~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~ 148 (530)
T COG0488 71 LSQEPPLDP--EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDED 148 (530)
T ss_pred eCCCCCcCC--CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCccc
Confidence 999965333 35776655442110 00 000011244556666676433 7
Q ss_pred ccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 204 ~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
+++.+||||||.||+||+++..+|++|++|+|+.-||-+.++.|.+++. .+|+||||.+++..
T Consensus 149 ~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~ 215 (530)
T COG0488 149 RPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDN 215 (530)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHH
Confidence 8889999999999999999999999999999999999977777777653 36899999998876
No 319
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.96 E-value=5.6e-29 Score=227.69 Aligned_cols=185 Identities=10% Similarity=0.096 Sum_probs=139.1
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEE
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 153 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~ 153 (313)
..+.|+++|+++. ++. +|+++||+|.+|+++||+|+||||||||+++|+|+++ |++|+|.++| .++
T Consensus 36 ~~~~l~i~nls~~--~~~----vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~---p~~G~I~i~g-----~i~ 101 (282)
T cd03291 36 DDNNLFFSNLCLV--GAP----VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE---PSEGKIKHSG-----RIS 101 (282)
T ss_pred CCCeEEEEEEEEe--ccc----ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECC-----EEE
Confidence 3457999999985 344 9999999999999999999999999999999999999 9999999987 389
Q ss_pred EEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHH---------hhcC----CCccCCCCCccCCCcchhh
Q 021380 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---------LRNQ----GSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 154 ~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~---------l~~~----~~~~~~~LSgGekqRv~la 220 (313)
|++|+... +. .|+.+|+.+.... ....+.+.++. +... .+..+..||+||+||++||
T Consensus 102 yv~q~~~l-~~--~tv~enl~~~~~~-------~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lA 171 (282)
T cd03291 102 FSSQFSWI-MP--GTIKENIIFGVSY-------DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLA 171 (282)
T ss_pred EEeCcccc-cc--cCHHHHhhccccc-------CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHH
Confidence 99999643 32 4888887653211 01111222222 1111 1223569999999999999
Q ss_pred hhcccCccEEEEcCcccccChhhHHHHHH-----hhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHH
Q 021380 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSS-----MFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 221 ~al~~~a~~li~d~~~llLDE~~~~~l~~-----l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~ 282 (313)
++++.+++++++|+|+..||....+.+.+ +.. .+|++|||++.+.. +++ |+++..|.+.++.
T Consensus 172 raL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 172 RAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999855443332 221 25799999998754 444 8888888877764
No 320
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.96 E-value=7.4e-30 Score=253.89 Aligned_cols=192 Identities=16% Similarity=0.088 Sum_probs=146.7
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
.|+++|+++.|++.. ..+|+|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 316 ~i~~~~v~~~y~~~~--~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~i~~~~~~~~ 390 (544)
T TIGR01842 316 HLSVENVTIVPPGGK--KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP---PTSGSVRLDGADLKQWDRETF 390 (544)
T ss_pred eEEEEEEEEEcCCCC--ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEehhhCCHHHH
Confidence 599999999996421 128999999999999999999999999999999999999 9999999998653
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHH---------HHHHhhcCCC----ccCCCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN---------CLKNLRNQGS----VYAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~---------~l~~l~~~~~----~~~~~LSgGekq 215 (313)
.+.++|++|+++.+. .|+++|+.+.. + ..+.+.+.+ .++.+..+.+ .....|||||||
T Consensus 391 ~~~i~~v~q~~~lf~---~ti~~Ni~~~~-----~-~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~q 461 (544)
T TIGR01842 391 GKHIGYLPQDVELFP---GTVAENIARFG-----E-NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQ 461 (544)
T ss_pred hhheEEecCCccccc---ccHHHHHhccC-----C-CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHH
Confidence 346999999975443 48999987431 1 122233333 3333322222 234589999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChh----hHHHHHHhh---cCeEEEEcChHHHHH--HHH----hhhhccCChhHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMF---DEKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~---~~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~ 282 (313)
|++||+++..+++++++|+++..||.+ +.+.+.++. ..+|++||+++.+.. +++ |++++.|+.+++.
T Consensus 462 rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 462 RIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVL 541 (544)
T ss_pred HHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 999999999999999999999999984 444454543 135799999987655 544 8888899877664
No 321
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=4.2e-29 Score=206.93 Aligned_cols=198 Identities=15% Similarity=0.153 Sum_probs=151.6
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC-------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------- 147 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~------- 147 (313)
.|.+++.+++|.||+.. -.+||||++.+||++||+|.+|||||||+++|++.+. |+.|+|.+....
T Consensus 4 ~PLL~V~~lsk~Yg~~~----gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~---p~~G~v~Y~~r~~~~~dl~ 76 (258)
T COG4107 4 KPLLSVSGLSKLYGPGK----GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT---PDAGTVTYRMRDGQPRDLY 76 (258)
T ss_pred CcceeehhhhhhhCCCc----CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC---CCCCeEEEEcCCCCchhHh
Confidence 46899999999999887 8899999999999999999999999999999999999 999999775322
Q ss_pred ----------CCCeEEEEeccCCCCCcccCCcccCHHH-----HHHhcCCCCCccHHHHHHHHHHhhcCC---CccCCCC
Q 021380 148 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKE-----AHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSF 209 (313)
Q Consensus 148 ----------~~~~i~~v~q~~~~~~~~~ltv~e~l~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~~~~~L 209 (313)
.+..-|++.|++..-.....+.-.|+-. +.+.|| ...+.+.++|+.+.... +..+..+
T Consensus 77 ~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG----~iR~~a~~WL~~VEI~~~RiDD~PrtF 152 (258)
T COG4107 77 TMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYG----NIRAEAQDWLEEVEIDLDRIDDLPRTF 152 (258)
T ss_pred hhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhh----hHHHHHHHHHHhcccCcccccCccccc
Confidence 0113688999876544433344555433 222333 23455678888888443 4567799
Q ss_pred CccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhc----C----eEEEEcChHHHHH---HHH----hhhhc
Q 021380 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----E----KWFIEVDLDTAMQ---RVL----KRHIS 274 (313)
Q Consensus 210 SgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~----~----~i~vtHd~~~~~~---rvi----gr~v~ 274 (313)
||||+||+.||+-+...++++++|+|+-.||-.+...+.+++. + .++||||+..+.- |.+ |++++
T Consensus 153 SGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve 232 (258)
T COG4107 153 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232 (258)
T ss_pred chHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEec
Confidence 9999999999999999999999999999999844444444333 2 4799999988755 444 88999
Q ss_pred cCChhHHHH
Q 021380 275 TGKPPDVAK 283 (313)
Q Consensus 275 ~G~~~e~~~ 283 (313)
.|-++.++.
T Consensus 233 ~GLTDrvLD 241 (258)
T COG4107 233 SGLTDRVLD 241 (258)
T ss_pred ccccccccc
Confidence 998777654
No 322
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.96 E-value=2.1e-29 Score=257.27 Aligned_cols=194 Identities=15% Similarity=0.163 Sum_probs=151.3
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
.|+++||+++|++.. ..+|+|+||+|++|+.++|+|+||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 455 ~i~~~~vsf~y~~~~--~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~---p~~G~I~idg~~i~~~~~~~~ 529 (694)
T TIGR01846 455 AITFENIRFRYAPDS--PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT---PQHGQVLVDGVDLAIADPAWL 529 (694)
T ss_pred eEEEEEEEEEcCCCC--ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEehhhCCHHHH
Confidence 599999999996421 128999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCc----cCCCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~LSgGekq 215 (313)
++.++|++|+++.+. .|++||+.+. .+ ..+.+.+.+.++..+ .+.+. ....|||||||
T Consensus 530 r~~i~~v~q~~~lf~---~ti~eNi~~~-----~~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~q 600 (694)
T TIGR01846 530 RRQMGVVLQENVLFS---RSIRDNIALC-----NP-GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQ 600 (694)
T ss_pred HHhCeEEccCCeehh---hhHHHHHhcC-----CC-CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHH
Confidence 245999999976443 5999998763 12 123344444444433 22232 23489999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||++++.+++++++|+++..||+. +.+.+.++.. .+|++||+++.+.. +++ |++++.|+.+++..
T Consensus 601 ri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 601 RIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 999999999999999999999999994 4444444432 25799999998866 555 89999999888764
Q ss_pred H
Q 021380 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 681 ~ 681 (694)
T TIGR01846 681 L 681 (694)
T ss_pred c
Confidence 3
No 323
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.96 E-value=5.4e-29 Score=206.12 Aligned_cols=128 Identities=16% Similarity=0.153 Sum_probs=111.4
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEec
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q 157 (313)
|+++|+++.|++.. +|+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|. ..++|++|
T Consensus 1 l~~~~l~~~~~~~~----~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~---~~i~~~~~ 70 (144)
T cd03221 1 IELENLSKTYGGKL----LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGST---VKIGYFEQ 70 (144)
T ss_pred CEEEEEEEEECCce----EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCe---EEEEEEcc
Confidence 46899999998765 9999999999999999999999999999999999999 99999999874 34777766
Q ss_pred cCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCccc
Q 021380 158 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 237 (313)
Q Consensus 158 ~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~l 237 (313)
||+||+||++||++++.+++++++|+|+.
T Consensus 71 ---------------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 71 ---------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred ---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 99999999999999999999999999999
Q ss_pred ccChhhHHHHHHhh----cCeEEEEcChHHHHH
Q 021380 238 FLDGGVWKDVSSMF----DEKWFIEVDLDTAMQ 266 (313)
Q Consensus 238 lLDE~~~~~l~~l~----~~~i~vtHd~~~~~~ 266 (313)
.||....+.+.+++ ..++++||+.+++..
T Consensus 100 ~LD~~~~~~l~~~l~~~~~til~~th~~~~~~~ 132 (144)
T cd03221 100 HLDLESIEALEEALKEYPGTVILVSHDRYFLDQ 132 (144)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHH
Confidence 99985444444433 335799999998754
No 324
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.96 E-value=3e-29 Score=250.74 Aligned_cols=193 Identities=12% Similarity=0.141 Sum_probs=149.1
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
.|+++|++++|++.. ..+|+|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 313 ~I~~~~v~~~y~~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~---p~~G~i~~~g~~~~~~~~~~~ 387 (569)
T PRK10789 313 ELDVNIRQFTYPQTD--HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD---VSEGDIRFHDIPLTKLQLDSW 387 (569)
T ss_pred cEEEEEEEEECCCCC--CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEHhhCCHHHH
Confidence 489999999996421 128999999999999999999999999999999999999 9999999998753
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCC----ccCCCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGS----VYAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~----~~~~~LSgGekq 215 (313)
++.++|++|+++.+. -|+++|+.++. + ....+.+.+.++..+ .+.+ .....|||||||
T Consensus 388 ~~~i~~v~q~~~lf~---~ti~~Ni~~~~-----~-~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~q 458 (569)
T PRK10789 388 RSRLAVVSQTPFLFS---DTVANNIALGR-----P-DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQ 458 (569)
T ss_pred HhheEEEccCCeecc---ccHHHHHhcCC-----C-CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHH
Confidence 246999999975433 49999987641 1 123334444444432 1122 233479999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||++++.+++++++|+++..||.+. .+.+.++.. .+|++||+++.+.. +++ |++++.|+.+++..
T Consensus 459 Ri~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 459 RISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred HHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHH
Confidence 9999999999999999999999999944 444444332 25799999988765 554 89999999887754
No 325
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.96 E-value=7e-29 Score=223.05 Aligned_cols=158 Identities=15% Similarity=0.132 Sum_probs=122.8
Q ss_pred cccccceee-----cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcc
Q 021380 96 PTSALASNV-----NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAM 170 (313)
Q Consensus 96 iL~~is~~i-----~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~ 170 (313)
.+++++|++ .+|++++|+||||||||||+++|+|+++ |++|+|.++|. .++|++|+....+ .+|+.
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~---p~~G~i~~~g~----~i~~~~q~~~~~~--~~tv~ 79 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK---PDEGDIEIELD----TVSYKPQYIKADY--EGTVR 79 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCc----eEEEecccccCCC--CCCHH
Confidence 455666665 4799999999999999999999999999 99999999875 5899999854333 47999
Q ss_pred cCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChh----hH
Q 021380 171 EDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VW 244 (313)
Q Consensus 171 e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~----~~ 244 (313)
+++.+....... ......++++.++. ..++++.+|||||+||++||++++.+++++++|+|+..||.. +.
T Consensus 80 e~l~~~~~~~~~----~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~ 155 (246)
T cd03237 80 DLLSSITKDFYT----HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMAS 155 (246)
T ss_pred HHHHHHhhhccc----cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 988654322211 12234567777763 346778899999999999999999999999999999999993 44
Q ss_pred HHHHHhhc----CeEEEEcChHHHHH
Q 021380 245 KDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 245 ~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
+.|.++.. .+|++|||++++..
T Consensus 156 ~~l~~~~~~~~~tiiivsHd~~~~~~ 181 (246)
T cd03237 156 KVIRRFAENNEKTAFVVEHDIIMIDY 181 (246)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 44545432 25799999998875
No 326
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.96 E-value=2.6e-29 Score=221.22 Aligned_cols=174 Identities=12% Similarity=0.077 Sum_probs=128.9
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceee-eCCCCCCCeEEEEeccCCCCCcccCCcccCHH
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~-~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~ 174 (313)
+|+||||+|++|++++|+||||||||||+|+|+|+++ |++|+|. +++... .+.+.... .+.+|+.+|+.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~sG~i~~~~~~~~-----~~~~~~~l--~~~ltv~enl~ 71 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA---PDEGDFIGLRGDAL-----PLGANSFI--LPGLTGEENAR 71 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCCCEEEecCcee-----cccccccc--CCcCcHHHHHH
Confidence 7999999999999999999999999999999999999 9999997 665422 12233222 23589999999
Q ss_pred HHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHH---
Q 021380 175 EAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS--- 249 (313)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~--- 249 (313)
+....++.... +....+++.++ ...++++..||+|||||+++|++++.+++++++|+|+..+|......+.+
T Consensus 72 ~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~ 148 (213)
T PRK15177 72 MMASLYGLDGD---EFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALA 148 (213)
T ss_pred HHHHHcCCCHH---HHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHH
Confidence 87665543211 11122222232 34567788999999999999999999999999999999999843333332
Q ss_pred -hh-c-CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 250 -MF-D-EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 250 -l~-~-~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
.. + .+|++|||++.+.. +++ |+++..|+..+..
T Consensus 149 ~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 191 (213)
T PRK15177 149 CQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQAT 191 (213)
T ss_pred HHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHH
Confidence 22 2 35799999998875 544 8888888777663
No 327
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=2e-29 Score=204.20 Aligned_cols=182 Identities=14% Similarity=0.057 Sum_probs=146.8
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------CC
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 150 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------~~ 150 (313)
|+.++||+...++.. .|-++||+|.+|||+-|+||+|||||||+..+.|.+...+.-+|+++++++.. .+
T Consensus 2 ~l~l~nvsl~l~g~c----LLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qR 77 (213)
T COG4136 2 MLCLKNVSLRLPGSC----LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQR 77 (213)
T ss_pred ceeeeeeeecCCCce----EEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhh
Confidence 588999999998887 99999999999999999999999999999999999986666799999998762 46
Q ss_pred eEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCcc
Q 021380 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a~ 228 (313)
.+|++|||+..++ +++|.+|+.|..... .........+...|++.+.. .+..+.+||||||.||++-+++...++
T Consensus 78 q~GiLFQD~lLFp--hlsVg~Nl~fAlp~~-~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk 154 (213)
T COG4136 78 QIGILFQDALLFP--HLSVGQNLLFALPAT-LKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPK 154 (213)
T ss_pred heeeeeccccccc--ccccccceEEecCcc-cccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcc
Confidence 7999999976554 599999998853221 11122344567788888843 355677999999999999999999999
Q ss_pred EEEEcCcccccChhhHHHHHHhhc--------CeEEEEcChHHHH
Q 021380 229 VVIVDGNYLFLDGGVWKDVSSMFD--------EKWFIEVDLDTAM 265 (313)
Q Consensus 229 ~li~d~~~llLDE~~~~~l~~l~~--------~~i~vtHd~~~~~ 265 (313)
++++|+|+.-||-.+.+..+++.- -+++||||.+.+.
T Consensus 155 ~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp 199 (213)
T COG4136 155 ALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP 199 (213)
T ss_pred eeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 999999999999765555555431 1479999998765
No 328
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.96 E-value=6.8e-29 Score=246.20 Aligned_cols=175 Identities=17% Similarity=0.152 Sum_probs=136.9
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
-|+++||+++|++.. .++|+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 320 ~i~~~~v~f~y~~~~--~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~I~~~g~~i~~~~~~~l 394 (529)
T TIGR02857 320 SLEFSGLSVAYPGRR--APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD---PTEGSIAVNGVPLADADADSW 394 (529)
T ss_pred eEEEEEEEEECCCCC--cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEehhhCCHHHH
Confidence 599999999997531 128999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCc----cCCCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~LSgGekq 215 (313)
.+.++|++|+++.+. .|++||+.++. + ....+.+.+.++..+ .+.+. ....|||||||
T Consensus 395 r~~i~~v~Q~~~lf~---~ti~~Ni~~~~-----~-~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~q 465 (529)
T TIGR02857 395 RDQIAWVPQHPFLFA---GTIAENIRLAR-----P-DASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQ 465 (529)
T ss_pred HhheEEEcCCCcccC---cCHHHHHhccC-----C-CCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHH
Confidence 235999999976443 59999987642 1 123344555555443 22233 23489999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhhHH----HHHHhhc--CeEEEEcChHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWK----DVSSMFD--EKWFIEVDLDTAM 265 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~~~----~l~~l~~--~~i~vtHd~~~~~ 265 (313)
|++||++++.+++++++|+++.-+|++..+ .+.++.. .+|+|||+++.+.
T Consensus 466 ri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~ 521 (529)
T TIGR02857 466 RLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAE 521 (529)
T ss_pred HHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 999999999999999999999999994444 4444322 2579999998764
No 329
>PLN03130 ABC transporter C family member; Provisional
Probab=99.95 E-value=5.6e-29 Score=271.36 Aligned_cols=192 Identities=16% Similarity=0.168 Sum_probs=155.1
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
.|+++||+++|.+.. .++|+||||+|++||.+||+|++|||||||+++|.|+++ |++|+|.++|.+.
T Consensus 1237 ~I~f~nVsf~Y~~~~--~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~---p~~G~I~IDG~dI~~i~l~~L 1311 (1622)
T PLN03130 1237 SIKFEDVVLRYRPEL--PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE---LERGRILIDGCDISKFGLMDL 1311 (1622)
T ss_pred cEEEEEEEEEeCCCC--CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCEecccCCHHHH
Confidence 599999999996431 139999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccC----CCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~LSgGekq 215 (313)
++.+++++||++.+. -|+++|+..+. ..+.+.+.++++..+ .+.+..+ ..|||||||
T Consensus 1312 R~~IsiVpQdp~LF~---GTIreNLd~~~-------~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQ 1381 (1622)
T PLN03130 1312 RKVLGIIPQAPVLFS---GTVRFNLDPFN-------EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQ 1381 (1622)
T ss_pred HhccEEECCCCcccc---ccHHHHhCcCC-------CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHH
Confidence 356999999986543 49999986531 223455556655543 2334333 379999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||||++.++++|++||.+.-+|.+ +.+.|++.+. .+|+|+|.++.+.. |++ |++++.|+++++..
T Consensus 1382 rlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1382 LLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999984 4444555443 25799999999988 666 99999999999875
No 330
>PLN03232 ABC transporter C family member; Provisional
Probab=99.95 E-value=4.7e-29 Score=271.37 Aligned_cols=192 Identities=15% Similarity=0.153 Sum_probs=154.1
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
.|+++||+++|++.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++ |++|+|.++|.+.
T Consensus 1234 ~I~f~nVsf~Y~~~~--~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~---p~~G~I~IdG~di~~i~~~~l 1308 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGL--PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE---LEKGRIMIDDCDVAKFGLTDL 1308 (1495)
T ss_pred cEEEEEEEEEECCCC--CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCceEEECCEEhhhCCHHHH
Confidence 499999999995421 129999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccC----CCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~LSgGekq 215 (313)
++.+++++|+++.+. -|+++|+.... ..+.+.+.++++..+ .+.+..+ ..|||||||
T Consensus 1309 R~~i~iVpQdp~LF~---gTIr~NL~~~~-------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQ 1378 (1495)
T PLN03232 1309 RRVLSIIPQSPVLFS---GTVRFNIDPFS-------EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQ 1378 (1495)
T ss_pred HhhcEEECCCCeeeC---ccHHHHcCCCC-------CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHH
Confidence 356999999986543 49999986531 233445556655543 2233333 379999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||||++.++++|++||++.-+|.+. .+.|++.++ .+|+|+|.++.+.. |++ |++++.|++++++.
T Consensus 1379 rlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1379 LLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999844 444444433 25799999999988 666 99999999999875
No 331
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.95 E-value=3.3e-29 Score=270.45 Aligned_cols=211 Identities=13% Similarity=0.072 Sum_probs=159.1
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC----CCe
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----PDV 151 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~----~~~ 151 (313)
.+|+++||++.|+.+.....+|+|||+++++|+++||+||||||||||+++|+|+++...|++|+|.++|.+. .+.
T Consensus 758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~ 837 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRS 837 (1394)
T ss_pred ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcc
Confidence 3689999999996322223499999999999999999999999999999999999851124789999999653 356
Q ss_pred EEEEeccCCCCCcccCCcccCHHHHHHhcCC---CCCccHHHHHHHHHHhhc--CCCccCC----CCCccCCCcchhhhh
Q 021380 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGA---PWTFNPLLLLNCLKNLRN--QGSVYAP----SFDHGVGDPVEDDIL 222 (313)
Q Consensus 152 i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~---~~~~~~~~~~~~l~~l~~--~~~~~~~----~LSgGekqRv~la~a 222 (313)
++|++|++..++ .+||+|++.+....+.. +.....+.+.++++.++. ..+..+. .||||||||++||++
T Consensus 838 i~yv~Q~~~~~~--~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~a 915 (1394)
T TIGR00956 838 IGYVQQQDLHLP--TSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVE 915 (1394)
T ss_pred eeeecccccCCC--CCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHH
Confidence 899999865433 48999999987655421 111223456788888874 3455555 799999999999999
Q ss_pred cccCcc-EEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHH-H---HHH----h-hhhccCChhH---HH
Q 021380 223 VGLQHK-VVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAM-Q---RVL----K-RHISTGKPPD---VA 282 (313)
Q Consensus 223 l~~~a~-~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~-~---rvi----g-r~v~~G~~~e---~~ 282 (313)
++.+++ +|++|||+..||. .+++.|+++.+. +|+++|+++... . +++ | +++..|++.+ .+
T Consensus 916 L~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~ 995 (1394)
T TIGR00956 916 LVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTI 995 (1394)
T ss_pred HHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchH
Confidence 999997 9999999999998 455555555432 579999998642 2 544 5 8888888643 34
Q ss_pred HHHHHh
Q 021380 283 KWRIEY 288 (313)
Q Consensus 283 ~~~~~~ 288 (313)
..|++.
T Consensus 996 ~~yf~~ 1001 (1394)
T TIGR00956 996 INYFEK 1001 (1394)
T ss_pred HHHHHh
Confidence 455554
No 332
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.95 E-value=4.5e-29 Score=232.97 Aligned_cols=167 Identities=17% Similarity=0.174 Sum_probs=131.9
Q ss_pred EECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCC
Q 021380 112 LAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT 185 (313)
Q Consensus 112 IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~ 185 (313)
|+||||||||||+|+|+|+++ |++|+|.++|.+. .+.++|++|+...++ .+|+.+|+.+....++....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~---p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~--~~tv~enl~~~~~~~~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ---PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFP--HMTVEENVAFGLKMRKVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHHHCCEEEEecCccccC--CCcHHHHHHHHHhhcCCCHH
Confidence 689999999999999999999 9999999998643 245999999964333 58999999987654433322
Q ss_pred ccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc----CeE
Q 021380 186 FNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKW 255 (313)
Q Consensus 186 ~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i 255 (313)
...+++.++++.++. ..++++.+||||||||++||++++.+++++++|+|+..||.. +++.|.++.. .+|
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii 155 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFV 155 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 223456788888874 356778899999999999999999999999999999999994 4444444432 257
Q ss_pred EEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 256 FIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 256 ~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++|||++++.. |++ |+++..|++.++..
T Consensus 156 ivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 156 FVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred EEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999998876 554 88888898887754
No 333
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.95 E-value=1.2e-28 Score=245.28 Aligned_cols=180 Identities=15% Similarity=0.133 Sum_probs=139.3
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------- 149 (313)
.|+++||+++|++.. ++|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 322 ~i~~~~v~f~y~~~~---~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~ 395 (547)
T PRK10522 322 TLELRNVTFAYQDNG---FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ---PQSGEILLDGKPVTAEQPEDY 395 (547)
T ss_pred eEEEEEEEEEeCCCC---eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCCCCHHHH
Confidence 599999999996421 28999999999999999999999999999999999999 99999999997632
Q ss_pred -CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCcc-------CCCCCccCCCcchhhh
Q 021380 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVY-------APSFDHGVGDPVEDDI 221 (313)
Q Consensus 150 -~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-------~~~LSgGekqRv~la~ 221 (313)
+.++|++|+++.+. .|+.+|- ...+.+.+.+.++.++...... -..||||||||++||+
T Consensus 396 ~~~i~~v~q~~~lf~---~ti~~n~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lAR 462 (547)
T PRK10522 396 RKLFSAVFTDFHLFD---QLLGPEG----------KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLL 462 (547)
T ss_pred hhheEEEecChhHHH---Hhhcccc----------CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHH
Confidence 46999999975433 4666651 1233455667777776432211 2489999999999999
Q ss_pred hcccCccEEEEcCcccccChhhHHH----HHHhh---c-CeEEEEcChHHHHH--HHH----hhhhcc
Q 021380 222 LVGLQHKVVIVDGNYLFLDGGVWKD----VSSMF---D-EKWFIEVDLDTAMQ--RVL----KRHIST 275 (313)
Q Consensus 222 al~~~a~~li~d~~~llLDE~~~~~----l~~l~---~-~~i~vtHd~~~~~~--rvi----gr~v~~ 275 (313)
+++.+++++++|+++..||.+..+. +.+.. + .+|+|||+++.+.. +++ |++++.
T Consensus 463 al~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 463 ALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999954443 33332 2 35799999987655 444 666654
No 334
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.9e-28 Score=205.36 Aligned_cols=176 Identities=16% Similarity=0.101 Sum_probs=141.2
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCC------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD------ 150 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~------ 150 (313)
+++.+|++..-+... ++.++||++.+||++-|.||||||||||||+|+|++. |++|+|.+++.....
T Consensus 2 ~L~a~~L~~~R~e~~----lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~---p~~G~v~~~~~~i~~~~~~~~ 74 (209)
T COG4133 2 MLEAENLSCERGERT----LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR---PDAGEVYWQGEPIQNVRESYH 74 (209)
T ss_pred cchhhhhhhccCcce----eecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC---CCCCeEEecCCCCccchhhHH
Confidence 578899999998887 9999999999999999999999999999999999999 999999999765322
Q ss_pred -eEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCc
Q 021380 151 -VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 151 -~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a 227 (313)
.+-|+--.+-. ...+|++||+.|....++. .+...+.+.++.++. ..+.++.+||-|||+||+||+-.+..+
T Consensus 75 ~~l~yLGH~~gi--K~eLTa~ENL~F~~~~~~~---~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~ 149 (209)
T COG4133 75 QALLYLGHQPGI--KTELTALENLHFWQRFHGS---GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPA 149 (209)
T ss_pred HHHHHhhccccc--cchhhHHHHHHHHHHHhCC---CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCC
Confidence 12233222122 2358999999999887764 234567888899984 467788899999999999999999999
Q ss_pred cEEEEcCcccccChhhHHHHHHhhcC-------eEEEEcChHHH
Q 021380 228 KVVIVDGNYLFLDGGVWKDVSSMFDE-------KWFIEVDLDTA 264 (313)
Q Consensus 228 ~~li~d~~~llLDE~~~~~l~~l~~~-------~i~vtHd~~~~ 264 (313)
.+.++|+|+.-+|.+-...+..++.. ++..||..--.
T Consensus 150 pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~ 193 (209)
T COG4133 150 PLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPI 193 (209)
T ss_pred CceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCC
Confidence 99999999999998666666555432 35788886443
No 335
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.6e-28 Score=208.09 Aligned_cols=202 Identities=19% Similarity=0.088 Sum_probs=147.6
Q ss_pred CCeEEEccceeEcccc-ccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC----
Q 021380 75 IPVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~-~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~---- 149 (313)
|.+|+++||+...+++ . +|++|||+|++||+.+|+||||||||||.++|+|.-. .-.++|+|.++|++..
T Consensus 1 m~~L~I~dLhv~v~~~ke----ILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~-Y~Vt~G~I~~~GedI~~l~~ 75 (251)
T COG0396 1 MMMLEIKDLHVEVEGKKE----ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK-YEVTEGEILFDGEDILELSP 75 (251)
T ss_pred CceeEEeeeEEEecCchh----hhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC-ceEecceEEECCcccccCCH
Confidence 5689999999999885 6 9999999999999999999999999999999999852 1179999999998732
Q ss_pred -----CeEEEEeccCCCCCcccCCcccCHHHHHHh-cCCCC--CccHHHHHHHHHHhhc---CCCccCC-CCCccCCCcc
Q 021380 150 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPW--TFNPLLLLNCLKNLRN---QGSVYAP-SFDHGVGDPV 217 (313)
Q Consensus 150 -----~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~-~~~~~--~~~~~~~~~~l~~l~~---~~~~~~~-~LSgGekqRv 217 (313)
.-+.+.+|.+...+ ..++.+.+...... ++... .....++.+.++.++. ..++.+. .||||||+|.
T Consensus 76 ~ERAr~GifLafQ~P~ei~--GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~ 153 (251)
T COG0396 76 DERARAGIFLAFQYPVEIP--GVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRN 153 (251)
T ss_pred hHHHhcCCEEeecCCccCC--CeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHH
Confidence 23677788876444 36666666554432 11111 1234556677777773 3567777 8999999999
Q ss_pred hhhhhcccCccEEEEcCcccccChhhHHHHHH----hhcC---eEEEEcChHHHHH------HHH--hhhhccCChhHHH
Q 021380 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS----MFDE---KWFIEVDLDTAMQ------RVL--KRHISTGKPPDVA 282 (313)
Q Consensus 218 ~la~al~~~a~~li~d~~~llLDE~~~~~l~~----l~~~---~i~vtHd~~~~~~------rvi--gr~v~~G~~~e~~ 282 (313)
.|...++..+++.++|++=..||-..++.+.+ +.+. .++|||....+.. +++ ||++..|.+ ++.
T Consensus 154 EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el~ 232 (251)
T COG0396 154 EILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-ELA 232 (251)
T ss_pred HHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HHH
Confidence 99766666666666666666666544444333 3332 4799999888766 233 999999998 655
Q ss_pred HH
Q 021380 283 KW 284 (313)
Q Consensus 283 ~~ 284 (313)
..
T Consensus 233 ~~ 234 (251)
T COG0396 233 EE 234 (251)
T ss_pred HH
Confidence 43
No 336
>PTZ00243 ABC transporter; Provisional
Probab=99.95 E-value=2.8e-28 Score=265.43 Aligned_cols=192 Identities=14% Similarity=0.111 Sum_probs=154.5
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
-|+++||+++|++.. ..+|+||||+|++||.+||+|++|||||||+++|.|+++ |++|+|.++|.+.
T Consensus 1308 ~I~f~nVsf~Y~~~~--~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~---p~~G~I~IDG~di~~i~l~~L 1382 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGL--PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE---VCGGEIRVNGREIGAYGLREL 1382 (1560)
T ss_pred eEEEEEEEEEeCCCC--CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccCCHHHH
Confidence 499999999996531 238999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCCccC----CCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVYA----PSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~~~~----~~LSgGekq 215 (313)
++.++|++|+++.+. -|+++|+... ...+.+.+.++++..+. +.+..+ ..|||||||
T Consensus 1383 R~~I~iVpQdp~LF~---gTIreNIdp~-------~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQ 1452 (1560)
T PTZ00243 1383 RRQFSMIPQDPVLFD---GTVRQNVDPF-------LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQ 1452 (1560)
T ss_pred HhcceEECCCCcccc---ccHHHHhCcc-------cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHH
Confidence 356999999986543 4999998532 12344566666666552 223333 379999999
Q ss_pred cchhhhhcccC-ccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHH
Q 021380 216 PVEDDILVGLQ-HKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~la~al~~~-a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~ 282 (313)
|++||||++.+ +++|++||++.-+|.+. .+.|.+.++ .+|+|+|.++.+.. +|+ |++++.|++++++
T Consensus 1453 rLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243 1453 LMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELV 1532 (1560)
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999985 89999999999999844 444444443 35799999999887 665 9999999999987
Q ss_pred H
Q 021380 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 1533 ~ 1533 (1560)
T PTZ00243 1533 M 1533 (1560)
T ss_pred h
Confidence 5
No 337
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.95 E-value=4.3e-28 Score=245.65 Aligned_cols=178 Identities=11% Similarity=-0.005 Sum_probs=139.2
Q ss_pred CeEEEccceeEcc-ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEE
Q 021380 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 76 ~~l~v~~ls~~y~-~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~ 154 (313)
.+|+++||++.|+ +.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++ .+.++|
T Consensus 450 ~~i~~~nv~~~~~~~~~----il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~---~~~G~i~~~~---~~~i~~ 519 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDV----LIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP---VYGGRLTKPA---KGKLFY 519 (659)
T ss_pred CeEEEEeeEEECCCCCe----eeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEeecC---CCcEEE
Confidence 3699999999995 334 9999999999999999999999999999999999998 9999998865 345999
Q ss_pred EeccCCCCCcccCCcccCHHHHHHhcCC-CCCccHHHHHHHHHHhhcC--CCc---------cCCCCCccCCCcchhhhh
Q 021380 155 LPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ--GSV---------YAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 155 v~q~~~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~l~~~--~~~---------~~~~LSgGekqRv~la~a 222 (313)
++|+++. +. .|+++|+.++....+. ......+.+.++++.++.. .++ ....||||||||++||++
T Consensus 520 v~Q~~~l-~~--~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARa 596 (659)
T TIGR00954 520 VPQRPYM-TL--GTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARL 596 (659)
T ss_pred ECCCCCC-CC--cCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHH
Confidence 9999753 33 3999998765322111 1112345566777777632 111 235899999999999999
Q ss_pred cccCccEEEEcCcccccChhhHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
++.+++++++|||+..||....+.+.+.+. .+|+|||+++.+..
T Consensus 597 l~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~~ 644 (659)
T TIGR00954 597 FYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWKY 644 (659)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHHh
Confidence 999999999999999999966655555443 25799999987643
No 338
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.95 E-value=3.2e-28 Score=265.25 Aligned_cols=192 Identities=17% Similarity=0.143 Sum_probs=154.8
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
-|+++||+++|++.. .++|+||||+|++||.+||+|++|||||||+++|.|+++ |++|+|.++|.+.
T Consensus 1284 ~I~f~nVsf~Y~~~~--~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~---~~~G~I~IdG~dI~~i~~~~L 1358 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDL--DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE---SAEGEIIIDGLNIAKIGLHDL 1358 (1522)
T ss_pred cEEEEEEEEEeCCCC--cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc---CCCCeEEECCEEccccCHHHH
Confidence 599999999997531 139999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccC----CCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~LSgGekq 215 (313)
++.+++++||++.+. -|+++|+... + ..+.+.+.++++..+ .+.+..+ ..|||||||
T Consensus 1359 R~~i~iVpQdp~LF~---gTIr~NLdp~----~---~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQ 1428 (1522)
T TIGR00957 1359 RFKITIIPQDPVLFS---GSLRMNLDPF----S---QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQ 1428 (1522)
T ss_pred HhcCeEECCCCcccC---ccHHHHcCcc----c---CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHH
Confidence 356999999986544 4999998632 1 234455566666544 2334434 379999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||||++.++++|++||++.-+|.+. .+.|++.+. .+|+|+|.++.+.. ||+ |++++.|+++++..
T Consensus 1429 rl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1429 LVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999844 444444443 25799999999988 666 99999999999865
No 339
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.95 E-value=2.6e-28 Score=220.41 Aligned_cols=180 Identities=14% Similarity=0.019 Sum_probs=133.0
Q ss_pred ccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceee-----------eCCCCCC
Q 021380 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-----------DSQVKPP 149 (313)
Q Consensus 81 ~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~-----------~~~~~~~ 149 (313)
.+|+++|++.. .+|+|+|+ +.+|++++|+||||||||||+++|+|+++ |++|+|. ++|.+..
T Consensus 4 ~~~~~~y~~~~---~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~---p~~G~I~~~~~~~~~~~~~~g~~~~ 76 (255)
T cd03236 4 DEPVHRYGPNS---FKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLK---PNLGKFDDPPDWDEILDEFRGSELQ 76 (255)
T ss_pred cCcceeecCcc---hhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEeeccccchhhhhccCchhh
Confidence 47999997642 28999995 99999999999999999999999999999 9999995 6665421
Q ss_pred ----------CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcc
Q 021380 150 ----------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPV 217 (313)
Q Consensus 150 ----------~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv 217 (313)
..+++++|... ... .++.+++.+.. ........+.++++.++.. .+..+..||+||+||+
T Consensus 77 ~~~~~~~~~~~~i~~~~~~~~-~~~--~~~~~~i~~~l-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv 148 (255)
T cd03236 77 NYFTKLLEGDVKVIVKPQYVD-LIP--KAVKGKVGELL-----KKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRV 148 (255)
T ss_pred hhhHHhhhcccceeeecchhc-cCc--hHHHHHHHHHh-----chhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 12567777632 221 24555554431 1122345677888888743 3567779999999999
Q ss_pred hhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH---hhhhcc
Q 021380 218 EDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL---KRHIST 275 (313)
Q Consensus 218 ~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi---gr~v~~ 275 (313)
+||++++.+++++++|+|+..||.. +.+.+.++.+ .+|++|||++.+.. +++ |++.+.
T Consensus 149 ~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~~~~~~~ 219 (255)
T cd03236 149 AIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLYGEPGAY 219 (255)
T ss_pred HHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEECCCCCcc
Confidence 9999999999999999999999994 4445554433 25799999998875 333 555543
No 340
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.95 E-value=3.8e-28 Score=262.74 Aligned_cols=194 Identities=13% Similarity=0.133 Sum_probs=150.9
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC--------------------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-------------------- 136 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-------------------- 136 (313)
-|+++||+++|++++ ..++|+|+||+|++|+++||+||||||||||+++|.|++. |
T Consensus 1165 ~I~f~nVsF~Y~~~~-~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~yd---p~~~~~~~~~~~~~~~~~~~~ 1240 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRP-NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYD---LKNDHHIVFKNEHTNDMTNEQ 1240 (1466)
T ss_pred eEEEEEEEEECCCCC-CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCC---Ccccccccccccccccccccc
Confidence 499999999996432 1239999999999999999999999999999999999998 7
Q ss_pred ----------------------------------CCceeeeCCCCC--------CCeEEEEeccCCCCCcccCCcccCHH
Q 021380 137 ----------------------------------QKASSFDSQVKP--------PDVATVLPMDGFHLYLSQLDAMEDPK 174 (313)
Q Consensus 137 ----------------------------------~~G~i~~~~~~~--------~~~i~~v~q~~~~~~~~~ltv~e~l~ 174 (313)
++|+|.++|.+. ++.++||+|+++.+. .|++||+.
T Consensus 1241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~---gTIreNI~ 1317 (1466)
T PTZ00265 1241 DYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN---MSIYENIK 1317 (1466)
T ss_pred ccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc---ccHHHHHh
Confidence 699999999763 356999999976543 69999998
Q ss_pred HHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccC----CCCCccCCCcchhhhhcccCccEEEEcCcccccCh
Q 021380 175 EAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (313)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE 241 (313)
++. + ....+.+.++++..+ .+.+..+ ..||||||||++||||++.++++|++|+++.-||.
T Consensus 1318 ~g~-----~-~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~ 1391 (1466)
T PTZ00265 1318 FGK-----E-DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDS 1391 (1466)
T ss_pred cCC-----C-CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH
Confidence 752 2 123344554444433 2334443 37999999999999999999999999999999998
Q ss_pred ----hhHHHHHHhh---c-CeEEEEcChHHHHH--HHH--------hhhh-ccCChhHHHH
Q 021380 242 ----GVWKDVSSMF---D-EKWFIEVDLDTAMQ--RVL--------KRHI-STGKPPDVAK 283 (313)
Q Consensus 242 ----~~~~~l~~l~---~-~~i~vtHd~~~~~~--rvi--------gr~v-~~G~~~e~~~ 283 (313)
.+.+.|.++. + .+|+|+|.+..+.. +++ |+++ +.|+.++++.
T Consensus 1392 ~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1392 NSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 3445555552 2 35899999998877 444 3545 7898888764
No 341
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.95 E-value=8.6e-28 Score=205.19 Aligned_cols=126 Identities=16% Similarity=0.143 Sum_probs=107.6
Q ss_pred ccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCC
Q 021380 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF 160 (313)
Q Consensus 81 ~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~ 160 (313)
.||+|.|++.. +++++ |++++|++++|+||||||||||+|+|+|+++ |++|+|.++|. .++|++|+..
T Consensus 4 ~~l~~~~~~~~----~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~----~i~~~~q~~~ 71 (177)
T cd03222 4 PDCVKRYGVFF----LLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGI----TPVYKPQYID 71 (177)
T ss_pred CCeEEEECCEE----EEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCE----EEEEEcccCC
Confidence 68999998876 88884 9999999999999999999999999999999 99999999874 3677766411
Q ss_pred CCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccC
Q 021380 161 HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240 (313)
Q Consensus 161 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLD 240 (313)
||||||||+++|++++.+++++++|+|+..||
T Consensus 72 ------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD 103 (177)
T cd03222 72 ------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103 (177)
T ss_pred ------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 99999999999999999999999999999999
Q ss_pred hhh----HHHHHHhhc----CeEEEEcChHHHHH
Q 021380 241 GGV----WKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 241 E~~----~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
... .+.+.++.. .+|++|||++.+..
T Consensus 104 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 104 IEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 844 444444432 25799999998875
No 342
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=7.3e-28 Score=248.11 Aligned_cols=194 Identities=15% Similarity=0.136 Sum_probs=156.6
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------- 149 (313)
-|+++||++.|+.++ .+.+|+|+||+|++|+.+||+||+||||||.+.+|-..+. |++|.|.++|.+.+
T Consensus 987 ~I~~~~V~F~YPsRP-~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd---p~~G~V~IDg~dik~lnl~~L 1062 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRP-DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD---PDAGKVKIDGVDIKDLNLKWL 1062 (1228)
T ss_pred EEEEeeeEeeCCCCC-CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCcccccCCHHHH
Confidence 399999999999775 5569999999999999999999999999999999999999 99999999998743
Q ss_pred -CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccCC----CCCccCCC
Q 021380 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYAP----SFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~~----~LSgGekq 215 (313)
+.++.|.|+|..+. -|++||+.++. .. ...+++.+.++... .+-+..++ +|||||||
T Consensus 1063 R~~i~lVsQEP~LF~---~TIrENI~YG~-----~~-vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQ 1133 (1228)
T KOG0055|consen 1063 RKQIGLVSQEPVLFN---GTIRENIAYGS-----EE-VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQ 1133 (1228)
T ss_pred HHhcceeccCchhhc---ccHHHHHhccC-----CC-CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHH
Confidence 46999999975443 59999998871 11 23444444444322 34455444 99999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcC------eEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~------~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||||++.+|++|++||-+.-||-+.-+.+++.+|. .|+|.|-+..+.. .++ |++++.|+-++++.
T Consensus 1134 RIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1134 RIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred HHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHh
Confidence 99999999999999999999999997555555555543 5899999999988 333 99999999888876
No 343
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.94 E-value=7.1e-28 Score=260.63 Aligned_cols=183 Identities=15% Similarity=0.094 Sum_probs=139.2
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeee-CCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~-~~~~~------- 148 (313)
.|+++||++.|++.. ..++|+|+||+|++|+++||+||||||||||+++|+|+++ |++|+|.+ +|.+.
T Consensus 382 ~I~~~nVsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~i~~g~~i~~~~~~~ 457 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRK-DVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD---PTEGDIIINDSHNLKDINLKW 457 (1466)
T ss_pred cEEEEEEEEEcCCCC-CCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc---CCCCeEEEeCCcchhhCCHHH
Confidence 599999999997532 1239999999999999999999999999999999999999 99999999 45442
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhc----------CC-----------------------------------
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR----------GA----------------------------------- 182 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~----------~~----------------------------------- 182 (313)
++.++|++|++..+ . .|+.+|+.++.... ..
T Consensus 458 lr~~Ig~V~Q~~~LF-~--~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (1466)
T PTZ00265 458 WRSKIGVVSQDPLLF-S--NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNEL 534 (1466)
T ss_pred HHHhccEecccccch-h--ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhh
Confidence 24599999997543 3 59999998853100 00
Q ss_pred ------CCCccHHHHHHHHHHhhc---------CC----CccCCCCCccCCCcchhhhhcccCccEEEEcCcccccCh--
Q 021380 183 ------PWTFNPLLLLNCLKNLRN---------QG----SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG-- 241 (313)
Q Consensus 183 ------~~~~~~~~~~~~l~~l~~---------~~----~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE-- 241 (313)
......+.+.++++.++. +. ......||||||||++||+|++.++++|++|+++..||.
T Consensus 535 l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~s 614 (1466)
T PTZ00265 535 IEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKS 614 (1466)
T ss_pred hhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 001223445555555441 11 234568999999999999999999999999999999998
Q ss_pred --hhHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 242 --GVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 242 --~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
.+.+.|.++.. .+|+|||+++.+..
T Consensus 615 e~~i~~~L~~~~~~~g~TvIiIsHrls~i~~ 645 (1466)
T PTZ00265 615 EYLVQKTINNLKGNENRITIIIAHRLSTIRY 645 (1466)
T ss_pred HHHHHHHHHHHhhcCCCEEEEEeCCHHHHHh
Confidence 44555555532 35799999998755
No 344
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.94 E-value=1.9e-27 Score=247.37 Aligned_cols=202 Identities=15% Similarity=0.136 Sum_probs=176.4
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
...+.++|++|.|+.... +++++||.|++||+.|+.|+|||||||++++|+|..+ |++|+++++|.+.
T Consensus 562 ~~~~~~~~L~k~y~~~~~---Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~---~t~G~a~i~g~~i~~~~~~ 635 (885)
T KOG0059|consen 562 SSALVLNNLSKVYGGKDG---AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK---PTSGEALIKGHDITVSTDF 635 (885)
T ss_pred cceEEEcceeeeecchhh---hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc---CCcceEEEecCccccccch
Confidence 457999999999987643 8999999999999999999999999999999999999 9999999987653
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhc
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al 223 (313)
.+.+||.||.+..+. .+|.+|++.+.++.+|.++....+.+..+++.++ ...+++++.||||+|+|+++|.|+
T Consensus 636 ~~~~~~iGyCPQ~d~l~~--~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aial 713 (885)
T KOG0059|consen 636 QQVRKQLGYCPQFDALWE--ELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIAL 713 (885)
T ss_pred hhhhhhcccCCchhhhhh--hccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHH
Confidence 234999999975444 5999999999999999887666666888899888 456778899999999999999999
Q ss_pred ccCccEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
+.++.++++|+|...+|+ ++|..+.++.+. +|++||.+++++. |+. |+...-|.++++...
T Consensus 714 ig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr 788 (885)
T KOG0059|consen 714 IGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR 788 (885)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence 999999999999999998 677777777763 5799999999988 665 999999999888743
No 345
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.94 E-value=8.9e-28 Score=239.43 Aligned_cols=175 Identities=14% Similarity=-0.020 Sum_probs=135.0
Q ss_pred eEEEccceeEcccccc-ccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC------
Q 021380 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~-~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------ 149 (313)
.|+++||+++|++... ..++|+|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~---p~~G~i~~~g~~i~~~~~~~ 413 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI---PQEGEILLDGAAVSADSRDD 413 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence 5999999999975311 1238999999999999999999999999999999999999 99999999987632
Q ss_pred --CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCC--------ccCCCCCccCCCcchh
Q 021380 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS--------VYAPSFDHGVGDPVED 219 (313)
Q Consensus 150 --~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~--------~~~~~LSgGekqRv~l 219 (313)
+.++|++|+++.+. -|+.+|.. +....+.+.++++.++.... .....||||||||++|
T Consensus 414 ~~~~i~~v~q~~~lf~---~ti~~n~~---------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlal 481 (555)
T TIGR01194 414 YRDLFSAIFADFHLFD---DLIGPDEG---------EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLAL 481 (555)
T ss_pred HHhhCcEEccChhhhh---hhhhcccc---------cchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHH
Confidence 45899999965433 36666631 12234556677777663221 1235799999999999
Q ss_pred hhhcccCccEEEEcCcccccChhhHHHHHH-----hh--c-CeEEEEcChHHHHH
Q 021380 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSS-----MF--D-EKWFIEVDLDTAMQ 266 (313)
Q Consensus 220 a~al~~~a~~li~d~~~llLDE~~~~~l~~-----l~--~-~~i~vtHd~~~~~~ 266 (313)
|++++.+++++++|+++..||++..+.+.+ +. + .+|+|||+++....
T Consensus 482 aRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~ 536 (555)
T TIGR01194 482 ICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFEL 536 (555)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHh
Confidence 999999999999999999999955544422 21 1 35799999987654
No 346
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.94 E-value=2.4e-27 Score=238.85 Aligned_cols=183 Identities=13% Similarity=0.076 Sum_probs=145.3
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC---CceeeeCCCCC-----CCeEEEEeccCCCCCcccC
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASSFDSQVKP-----PDVATVLPMDGFHLYLSQL 167 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~---~G~i~~~~~~~-----~~~i~~v~q~~~~~~~~~l 167 (313)
+|+|+|+++++||+++|+||||||||||+++|+|..+ +. +|+|.++|.+. .+.++|++|++..++ .+
T Consensus 40 iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~---~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~--~l 114 (617)
T TIGR00955 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSP---KGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIP--TL 114 (617)
T ss_pred cccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCcceeEEEECCEECCHHHHhhhceeeccccccCc--cC
Confidence 9999999999999999999999999999999999987 64 79999999753 246899999976443 48
Q ss_pred CcccCHHHHHHhcCC---CCCccHHHHHHHHHHhhc--CCCccCC------CCCccCCCcchhhhhcccCccEEEEcCcc
Q 021380 168 DAMEDPKEAHARRGA---PWTFNPLLLLNCLKNLRN--QGSVYAP------SFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (313)
Q Consensus 168 tv~e~l~~~~~~~~~---~~~~~~~~~~~~l~~l~~--~~~~~~~------~LSgGekqRv~la~al~~~a~~li~d~~~ 236 (313)
||+||+.+....+.. ........+.++++.++. ..+..++ .||||||||++||++++.+++++++|+|+
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPt 194 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPT 194 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCC
Confidence 999999987765421 112233457788888874 3355554 59999999999999999999999999999
Q ss_pred cccCh----hhHHHHHHhhcC---eEEEEcChH-HHHH---HHH----hhhhccCChhHHHH
Q 021380 237 LFLDG----GVWKDVSSMFDE---KWFIEVDLD-TAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 237 llLDE----~~~~~l~~l~~~---~i~vtHd~~-~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
..||. .+++.++++.+. +|+++|++. .+.. +++ |+++..|++.++..
T Consensus 195 sgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 195 SGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred cchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence 99999 455555555432 479999985 4443 554 89999999888754
No 347
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.94 E-value=2.4e-27 Score=257.75 Aligned_cols=191 Identities=14% Similarity=0.122 Sum_probs=153.4
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
-|+++||+++|+... ..+|+||||+|++|+.+||+|++|||||||+++|.|++ +.+|+|.++|.+.
T Consensus 1217 ~I~f~nVs~~Y~~~~--~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~----~~~G~I~IdG~di~~i~~~~l 1290 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAG--RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL----STEGEIQIDGVSWNSVTLQTW 1290 (1490)
T ss_pred eEEEEEEEEEeCCCC--cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc----CCCcEEEECCEEcccCCHHHH
Confidence 599999999996421 23999999999999999999999999999999999998 5689999999763
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCCccCC----CCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVYAP----SFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~~~~~----~LSgGekq 215 (313)
++.++|++|+++.+. -|+++|+... ...+.+.+.++++.++. +.+..+. .|||||||
T Consensus 1291 R~~is~IpQdp~LF~---GTIR~NLdp~-------~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQ 1360 (1490)
T TIGR01271 1291 RKAFGVIPQKVFIFS---GTFRKNLDPY-------EQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQ 1360 (1490)
T ss_pred HhceEEEeCCCccCc---cCHHHHhCcc-------cCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHH
Confidence 356999999986554 4999998532 12345566677776652 2233333 79999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||||++.++++|++||++.-+|.+ +.+.|++.+. .+|+|+|.++.+.. ||+ |++++.|++.+++.
T Consensus 1361 rL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1361 LMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred HHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 999999999999999999999999984 4445555443 25799999999887 666 99999999998864
No 348
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.94 E-value=7.1e-28 Score=226.15 Aligned_cols=194 Identities=18% Similarity=0.160 Sum_probs=146.7
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
-|+++||++.|.... ++|+||||++.+|+.++|+||+|+||||++|+|..+.. .++|.|.++|++.
T Consensus 537 ~i~fsnvtF~Y~p~k---~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd---v~sGsI~iDgqdIrnvt~~SL 610 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPGK---PVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD---VNSGSITIDGQDIRNVTQSSL 610 (790)
T ss_pred eEEEEEeEEecCCCC---ceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh---ccCceEEEcCchHHHHHHHHH
Confidence 599999999996433 39999999999999999999999999999999999999 9999999999884
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHH-----HHHHHHHHhh---cCCCccCC----CCCccCCCc
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPL-----LLLNCLKNLR---NQGSVYAP----SFDHGVGDP 216 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~l~---~~~~~~~~----~LSgGekqR 216 (313)
++.||+||||...+. -|+..|+.++ .+..-+++ ++..+-++.- ++-+.+++ .||||||||
T Consensus 611 Rs~IGVVPQDtvLFN---dTI~yNIrya-----k~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQR 682 (790)
T KOG0056|consen 611 RSSIGVVPQDTVLFN---DTILYNIRYA-----KPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQR 682 (790)
T ss_pred HHhcCcccCcceeec---ceeeeheeec-----CCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhh
Confidence 346999999975433 4889998765 23222221 1111222221 22223333 899999999
Q ss_pred chhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhcC--eEEEEcChHHHHH--HHH----hhhhccCChhHHHHH
Q 021380 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 217 v~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~~ 284 (313)
|+||+++...+.++++|+.+.-||- .+...+.+++.. .|+|-|.+..+.. .++ |+++++|+-+|++..
T Consensus 683 VAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~r 762 (790)
T KOG0056|consen 683 VAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKR 762 (790)
T ss_pred HHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhc
Confidence 9998888888888888888888886 344555556543 6899999998776 222 999999999988764
No 349
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.94 E-value=4.9e-27 Score=221.88 Aligned_cols=196 Identities=15% Similarity=0.088 Sum_probs=153.1
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC--------C
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~--------~ 148 (313)
.|.+++++..=.+. ..++|++|||.+.+|+.+|||||||||||||.|+|.|..+ |.+|.|.+||-+ .
T Consensus 334 ~L~Ve~l~~~PPg~--~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~---p~~G~VRLDga~l~qWd~e~l 408 (580)
T COG4618 334 ALSVERLTAAPPGQ--KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP---PTSGSVRLDGADLRQWDREQL 408 (580)
T ss_pred eeeEeeeeecCCCC--CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccc---cCCCcEEecchhhhcCCHHHh
Confidence 69999998865442 2459999999999999999999999999999999999999 999999999865 2
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHH---------HHHHHHHhhcCCCccCC----CCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLL---------LLNCLKNLRNQGSVYAP----SFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~---------~~~~l~~l~~~~~~~~~----~LSgGekq 215 (313)
.+.+||+|||-.. +. =|+.||+.-+.. ..+.++ +.+++-.+-.+-+..+. .|||||||
T Consensus 409 G~hiGYLPQdVeL-F~--GTIaeNIaRf~~------~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQ 479 (580)
T COG4618 409 GRHIGYLPQDVEL-FD--GTIAENIARFGE------EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQ 479 (580)
T ss_pred ccccCcCccccee-cC--CcHHHHHHhccc------cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHH
Confidence 4679999999543 33 499999864321 122222 23444444445555554 89999999
Q ss_pred cchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHHH--HHH----hhhhccCChhHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~ 282 (313)
|+++|+|+-.+++++++|||=.-||+ .+.+.|...... +|+|||-+..+.. +++ |++-..|+.+|++
T Consensus 480 RIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVL 559 (580)
T COG4618 480 RIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVL 559 (580)
T ss_pred HHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHH
Confidence 99999999999999999999999998 344444444433 4799999988776 555 8999999999998
Q ss_pred HHHH
Q 021380 283 KWRI 286 (313)
Q Consensus 283 ~~~~ 286 (313)
.+..
T Consensus 560 a~~~ 563 (580)
T COG4618 560 AKVL 563 (580)
T ss_pred HHhc
Confidence 8743
No 350
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=7.2e-27 Score=192.91 Aligned_cols=185 Identities=17% Similarity=0.121 Sum_probs=143.3
Q ss_pred eEEEccceeEccccc---cccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC------
Q 021380 77 VVEARCMDEVYDALA---QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------ 147 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~---~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~------ 147 (313)
.|.++|++|+|--.. -..++|+++||+++.||++++-||+|||||||||+|.|.+. |++|+|.+....
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~---~d~G~I~v~H~g~~vdl~ 80 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL---PDEGQILVRHEGEWVDLV 80 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC---CCCceEEEEeCcchhhhh
Confidence 588999999993111 13558999999999999999999999999999999999999 999999875432
Q ss_pred ----------CCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCC
Q 021380 148 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVG 214 (313)
Q Consensus 148 ----------~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGek 214 (313)
+.+.+||++|.--..+ ..+..+-+..+....|.+......++..+|.++... ....+.++|||||
T Consensus 81 ~a~pr~vl~vRr~TiGyVSQFLRviP--RV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEq 158 (235)
T COG4778 81 TAEPREVLEVRRTTIGYVSQFLRVIP--RVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQ 158 (235)
T ss_pred ccChHHHHHHHHhhhHHHHHHHHhcc--CcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchh
Confidence 1245899999733233 356677777777778888777777888999988843 3456679999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhc----C---eEEEEcChHHHHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----E---KWFIEVDLDTAMQ 266 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~----~---~i~vtHd~~~~~~ 266 (313)
|||.||+.++.+-.+|++|+|+.-||......+.+++. . .+=|-||.+....
T Consensus 159 QRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~ 217 (235)
T COG4778 159 QRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREA 217 (235)
T ss_pred eehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHH
Confidence 99999999999999999999999999844444444433 2 2456698766543
No 351
>PLN03130 ABC transporter C family member; Provisional
Probab=99.94 E-value=1.1e-26 Score=253.57 Aligned_cols=188 Identities=16% Similarity=0.182 Sum_probs=147.9
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC-ceeeeCCCCCCCeEEEE
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-ASSFDSQVKPPDVATVL 155 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~-G~i~~~~~~~~~~i~~v 155 (313)
.|+++|+++.|++.. ..++|+|+||+|++|+.++|+||+|||||||+++|+|+++ |++ |+|.+.+ .++|+
T Consensus 614 ~I~~~nvsf~y~~~~-~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~GG~I~l~~-----~Iayv 684 (1622)
T PLN03130 614 AISIKNGYFSWDSKA-ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP---PRSDASVVIRG-----TVAYV 684 (1622)
T ss_pred ceEEEeeEEEccCCC-CCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc---cCCCceEEEcC-----eEEEE
Confidence 599999999997421 1238999999999999999999999999999999999999 999 8998744 59999
Q ss_pred eccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccCC----CCCccCCCcchhhhh
Q 021380 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYAP----SFDHGVGDPVEDDIL 222 (313)
Q Consensus 156 ~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~~----~LSgGekqRv~la~a 222 (313)
+|+++.+. -|++||+.++.. .+.+++.++++..+ .+.+..++ .||||||||++||||
T Consensus 685 ~Q~p~Lfn---gTIreNI~fg~~-------~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARA 754 (1622)
T PLN03130 685 PQVSWIFN---ATVRDNILFGSP-------FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARA 754 (1622)
T ss_pred cCccccCC---CCHHHHHhCCCc-------ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHH
Confidence 99976543 599999987522 24455555555443 23333333 799999999999999
Q ss_pred cccCccEEEEcCcccccChhhHHHH-----HHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDGGVWKDV-----SSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE~~~~~l-----~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
+..+++++++|+++.-+|.++-+.+ ..... .+|+|||+++.+.. +++ |++++.|+.+++..
T Consensus 755 ly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 755 VYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred HhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999998544332 22222 35899999988766 555 89999999888753
No 352
>PLN03140 ABC transporter G family member; Provisional
Probab=99.94 E-value=4.2e-27 Score=253.89 Aligned_cols=208 Identities=14% Similarity=0.062 Sum_probs=154.9
Q ss_pred eEEEccceeEccccc---------cccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC
Q 021380 77 VVEARCMDEVYDALA---------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~---------~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~ 147 (313)
.+..+||++.+.... ....+|+|||+.+++|++++|+|||||||||||++|+|..+. .+.+|+|.++|.+
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~-g~~~G~I~inG~~ 945 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYIEGDIRISGFP 945 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCC-CcccceEEECCcc
Confidence 588999988874211 123499999999999999999999999999999999998751 1368999999865
Q ss_pred C-----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCC----ccHHHHHHHHHHhhcC--CCccC-----CCCCc
Q 021380 148 P-----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT----FNPLLLLNCLKNLRNQ--GSVYA-----PSFDH 211 (313)
Q Consensus 148 ~-----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~----~~~~~~~~~l~~l~~~--~~~~~-----~~LSg 211 (313)
. .+.++|++|++..++ .+||+|++.+....+ .+.. ...+.+.++++.++.. .+..+ ..|||
T Consensus 946 ~~~~~~~~~igyv~Q~d~~~~--~lTV~E~L~~~a~lr-~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSg 1022 (1470)
T PLN03140 946 KKQETFARISGYCEQNDIHSP--QVTVRESLIYSAFLR-LPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLST 1022 (1470)
T ss_pred CChHHhhhheEEEccccccCC--CCcHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCH
Confidence 3 245899999975443 489999999876543 2211 2233567888888743 34443 58999
Q ss_pred cCCCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHH-HHH---HHH-----hhhhcc
Q 021380 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDT-AMQ---RVL-----KRHIST 275 (313)
Q Consensus 212 GekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~-~~~---rvi-----gr~v~~ 275 (313)
||||||+||++++.++++|++|||+..||. .+++.|+++.+. +|+++|+++. +.. +++ |+++..
T Consensus 1023 GerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~ 1102 (1470)
T PLN03140 1023 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYS 1102 (1470)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEE
Confidence 999999999999999999999999999998 455555555433 5799999974 333 443 577888
Q ss_pred CChh---HHHHHHHHh
Q 021380 276 GKPP---DVAKWRIEY 288 (313)
Q Consensus 276 G~~~---e~~~~~~~~ 288 (313)
|++. .-+..|++.
T Consensus 1103 G~~~~~~~~~~~yF~~ 1118 (1470)
T PLN03140 1103 GPLGRNSHKIIEYFEA 1118 (1470)
T ss_pred CCcccccccHHHHHHh
Confidence 8764 334556665
No 353
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.93 E-value=1.3e-26 Score=252.78 Aligned_cols=187 Identities=12% Similarity=0.114 Sum_probs=145.4
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEe
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~ 156 (313)
.|+++|+++.|++.. .++|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++| .++|++
T Consensus 636 ~i~~~~~~~~~~~~~--~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~---~~~G~i~~~g-----~i~yv~ 705 (1522)
T TIGR00957 636 SITVHNATFTWARDL--PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVHMKG-----SVAYVP 705 (1522)
T ss_pred cEEEEEeEEEcCCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---cCCcEEEECC-----EEEEEc
Confidence 699999999997421 128999999999999999999999999999999999999 9999999986 489999
Q ss_pred ccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHH------HHhh---cCC----CccCCCCCccCCCcchhhhhc
Q 021380 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCL------KNLR---NQG----SVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 157 q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l------~~l~---~~~----~~~~~~LSgGekqRv~la~al 223 (313)
|++.. ++ .|++||+.++.. .+.++..+++ +.++ .+. ..+...||||||||++||+|+
T Consensus 706 Q~~~l-~~--~Ti~eNI~~g~~-------~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl 775 (1522)
T TIGR00957 706 QQAWI-QN--DSLRENILFGKA-------LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV 775 (1522)
T ss_pred CCccc-cC--CcHHHHhhcCCc-------cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHH
Confidence 99754 32 699999987522 1122222222 2222 122 234569999999999999999
Q ss_pred ccCccEEEEcCcccccChhhHHHHHHhh---------cCeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMF---------DEKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE~~~~~l~~l~---------~~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
..+++++++|+++.-||.+..+.+.+.+ ..+|+|||+++.+.. +++ |++++.|+.+++..
T Consensus 776 ~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 776 YSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHh
Confidence 9999999999999999995554444322 135799999998776 544 88888998887753
No 354
>PLN03232 ABC transporter C family member; Provisional
Probab=99.93 E-value=1.7e-26 Score=251.38 Aligned_cols=189 Identities=14% Similarity=0.143 Sum_probs=146.0
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEe
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~ 156 (313)
.|+++|+++.|++.. ..++|+|+||+|++|+.++|+||+|||||||+++|+|+++ |++|.+.. ....++|++
T Consensus 614 ~I~~~~vsF~y~~~~-~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~G~i~~----~~~~Iayv~ 685 (1495)
T PLN03232 614 AISIKNGYFSWDSKT-SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS---HAETSSVV----IRGSVAYVP 685 (1495)
T ss_pred cEEEEeeEEEcCCCC-CCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc---ccCCCEEE----ecCcEEEEc
Confidence 599999999997421 1238999999999999999999999999999999999999 99987642 234599999
Q ss_pred ccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccCC----CCCccCCCcchhhhhc
Q 021380 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYAP----SFDHGVGDPVEDDILV 223 (313)
Q Consensus 157 q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~~----~LSgGekqRv~la~al 223 (313)
|+++.+. -|++||+.++. ..+.+++.++++..+ .+.+..++ .||||||||++||||+
T Consensus 686 Q~p~Lf~---gTIreNI~fg~-------~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl 755 (1495)
T PLN03232 686 QVSWIFN---ATVRENILFGS-------DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAV 755 (1495)
T ss_pred Ccccccc---ccHHHHhhcCC-------ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHH
Confidence 9976543 59999998762 124455555555443 22333333 7999999999999999
Q ss_pred ccCccEEEEcCcccccChhhHHHH-----HHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 224 GLQHKVVIVDGNYLFLDGGVWKDV-----SSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE~~~~~l-----~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
..+++++++|+++.-||.++-+.+ ....+ .+|+|||+++.+.. +++ |++++.|+.+++..
T Consensus 756 y~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 756 YSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 999999999999999998544333 22222 35799999988766 554 89999998888753
No 355
>PLN03073 ABC transporter F family; Provisional
Probab=99.93 E-value=5.9e-27 Score=238.15 Aligned_cols=199 Identities=11% Similarity=0.043 Sum_probs=129.1
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC----
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 149 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~---- 149 (313)
.+.+|+++|+++.|++.. +|+|+||+|.+|+++||+|+||||||||||+|+|......|++|+|.+.++...
T Consensus 174 ~~~~I~i~nls~~y~~~~----ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~ 249 (718)
T PLN03073 174 AIKDIHMENFSISVGGRD----LIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDT 249 (718)
T ss_pred CceeEEEceEEEEeCCCE----EEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCC
Confidence 345899999999998776 999999999999999999999999999999999964100167777643221100
Q ss_pred ------------------CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCC-------------------ccHHHHH
Q 021380 150 ------------------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-------------------FNPLLLL 192 (313)
Q Consensus 150 ------------------~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~-------------------~~~~~~~ 192 (313)
..+++++|++.... .+..++... ....+.+.. ....++.
T Consensus 250 t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~---~~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~ 325 (718)
T PLN03073 250 TALQCVLNTDIERTQLLEEEAQLVAQQRELEF---ETETGKGKG-ANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAA 325 (718)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh---ccccccccc-ccccccchHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 00111121100000 000000000 000000110 1123445
Q ss_pred HHHHHhhcC---CCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhc----CeEEEEcChHHHH
Q 021380 193 NCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAM 265 (313)
Q Consensus 193 ~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~----~~i~vtHd~~~~~ 265 (313)
.+|..++.. .++++.+||||||||++||++++.++++|++|+|+..||....+.+.+++. .+|+||||++.+.
T Consensus 326 ~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~ 405 (718)
T PLN03073 326 SILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLN 405 (718)
T ss_pred HHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHH
Confidence 556666642 356778999999999999999999999999999999999955555554443 3579999999877
Q ss_pred H---HHH----hhhh-ccCChhH
Q 021380 266 Q---RVL----KRHI-STGKPPD 280 (313)
Q Consensus 266 ~---rvi----gr~v-~~G~~~e 280 (313)
. +++ |++. ..|+..+
T Consensus 406 ~~~d~i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 406 TVVTDILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred HhCCEEEEEECCEEEEeCCCHHH
Confidence 6 444 6665 4565543
No 356
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=3.9e-26 Score=191.49 Aligned_cols=129 Identities=17% Similarity=0.203 Sum_probs=107.2
Q ss_pred EccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC--------Ce
Q 021380 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--------DV 151 (313)
Q Consensus 80 v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~--------~~ 151 (313)
++++++.|.+.. +|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.+++.... ..
T Consensus 2 ~~~~~~~~~~~~----~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~~~~ 74 (157)
T cd00267 2 IENLSFRYGGRT----ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLPLEELRRR 74 (157)
T ss_pred eEEEEEEeCCee----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCCHHHHHhc
Confidence 578999998766 9999999999999999999999999999999999999 99999998874321 11
Q ss_pred EEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEE
Q 021380 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 152 i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li 231 (313)
++|++| ||+||+||++++++++.++++++
T Consensus 75 i~~~~q---------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~i 103 (157)
T cd00267 75 IGYVPQ---------------------------------------------------LSGGQRQRVALARALLLNPDLLL 103 (157)
T ss_pred eEEEee---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 333332 99999999999999999999999
Q ss_pred EcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 232 VDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 232 ~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
+|+|+..||.. +.+.+.++.. ..+++||+++++..
T Consensus 104 lDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 104 LDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99999999983 4444444433 25799999998764
No 357
>PRK13409 putative ATPase RIL; Provisional
Probab=99.93 E-value=1.8e-26 Score=230.60 Aligned_cols=170 Identities=14% Similarity=-0.006 Sum_probs=128.6
Q ss_pred ccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceee-----------eCCCCC-
Q 021380 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-----------DSQVKP- 148 (313)
Q Consensus 81 ~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~-----------~~~~~~- 148 (313)
++++++||++. .+|++++ .+++|+++||+||||||||||+|+|+|+++ |++|+|. ++|.+.
T Consensus 77 ~~~~~~yg~~~---~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~---p~~G~i~~~~~~~~~~~~~~G~~l~ 149 (590)
T PRK13409 77 EEPVHRYGVNG---FKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI---PNLGDYEEEPSWDEVLKRFRGTELQ 149 (590)
T ss_pred cCceEEecCCc---eeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCccccCCCcHHHHHHHhCChHHH
Confidence 34899998632 1899999 899999999999999999999999999999 9999997 777542
Q ss_pred ---------CCeEEEEeccCCCCCc-ccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCc
Q 021380 149 ---------PDVATVLPMDGFHLYL-SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDP 216 (313)
Q Consensus 149 ---------~~~i~~v~q~~~~~~~-~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqR 216 (313)
...+++.+|.....+. ...|+.+++... .....+.++++.++. ..++++.+|||||+||
T Consensus 150 ~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qr 220 (590)
T PRK13409 150 NYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---------DERGKLDEVVERLGLENILDRDISELSGGELQR 220 (590)
T ss_pred HHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhh---------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence 1224555554222111 012666665421 123467788888884 3577888999999999
Q ss_pred chhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH
Q 021380 217 VEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ 266 (313)
Q Consensus 217 v~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~ 266 (313)
++||++++.+++++++|+|+..||.. +.+.|.++.+ .+|+||||++++..
T Consensus 221 v~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~ 276 (590)
T PRK13409 221 VAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDY 276 (590)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99999999999999999999999993 4444444432 35799999998875
No 358
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.93 E-value=2.8e-26 Score=195.67 Aligned_cols=130 Identities=18% Similarity=0.128 Sum_probs=99.6
Q ss_pred ccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC---CeEEEEeccCCCCCcccCCccc
Q 021380 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---DVATVLPMDGFHLYLSQLDAME 171 (313)
Q Consensus 95 ~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~---~~i~~v~q~~~~~~~~~ltv~e 171 (313)
.+|+|+||+|++|++++|+||||||||||+|+|. +++|++.+++.... ..++|++|
T Consensus 9 ~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il-------~~~G~v~~~~~~~~~~~~~~~~~~q-------------- 67 (176)
T cd03238 9 HNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL-------YASGKARLISFLPKFSRNKLIFIDQ-------------- 67 (176)
T ss_pred eeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh-------hcCCcEEECCcccccccccEEEEhH--------------
Confidence 3899999999999999999999999999999873 46888887654210 01222221
Q ss_pred CHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhcccC--ccEEEEcCcccccChhh---
Q 021380 172 DPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ--HKVVIVDGNYLFLDGGV--- 243 (313)
Q Consensus 172 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~--a~~li~d~~~llLDE~~--- 243 (313)
.++++.++.. .+.++.+||+||+||++||++++.+ ++++++|+|+..||...
T Consensus 68 --------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~ 127 (176)
T cd03238 68 --------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQ 127 (176)
T ss_pred --------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHH
Confidence 3456666632 4667889999999999999999999 99999999999999943
Q ss_pred -HHHHHHhhc---CeEEEEcChHHHH
Q 021380 244 -WKDVSSMFD---EKWFIEVDLDTAM 265 (313)
Q Consensus 244 -~~~l~~l~~---~~i~vtHd~~~~~ 265 (313)
.+.+.++.+ .+|++||+++++.
T Consensus 128 l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 128 LLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 344444432 2479999998863
No 359
>PLN03140 ABC transporter G family member; Provisional
Probab=99.93 E-value=6.7e-26 Score=244.63 Aligned_cols=185 Identities=14% Similarity=0.139 Sum_probs=143.7
Q ss_pred cccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC---CceeeeCCCCC-----CCeEEEEeccCCCCCcc
Q 021380 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASSFDSQVKP-----PDVATVLPMDGFHLYLS 165 (313)
Q Consensus 94 ~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~---~G~i~~~~~~~-----~~~i~~v~q~~~~~~~~ 165 (313)
..+|+|+|+.|++|++++|+||||||||||||+|+|+++ |+ +|+|.++|.+. .+.++|++|++.+++
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~---~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~-- 252 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD---PSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVG-- 252 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC---CCCcceeEEEECCEechhhcccceeEEecccccCCC--
Confidence 448999999999999999999999999999999999998 87 99999998653 356899999975544
Q ss_pred cCCcccCHHHHHHhcCCCC----------Cc---------c---------------HHHHHHHHHHhhcCC-------Cc
Q 021380 166 QLDAMEDPKEAHARRGAPW----------TF---------N---------------PLLLLNCLKNLRNQG-------SV 204 (313)
Q Consensus 166 ~ltv~e~l~~~~~~~~~~~----------~~---------~---------------~~~~~~~l~~l~~~~-------~~ 204 (313)
.+||.|++.+....++... .+ + ...+..+++.++... +.
T Consensus 253 ~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~ 332 (1470)
T PLN03140 253 VMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDE 332 (1470)
T ss_pred cCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCc
Confidence 5899999999765443110 00 0 012355777777432 44
Q ss_pred cCCCCCccCCCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcCh-HHHHH---HHH---
Q 021380 205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDL-DTAMQ---RVL--- 269 (313)
Q Consensus 205 ~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~-~~~~~---rvi--- 269 (313)
.+..|||||||||.||++++.+++++++|+++..||. .+.+.|+++.+ .+|+++|+. +++.. +++
T Consensus 333 ~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~ 412 (1470)
T PLN03140 333 MIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLS 412 (1470)
T ss_pred cccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEee
Confidence 6679999999999999999999999999999999999 55556666543 246888985 45544 554
Q ss_pred -hhhhccCChhHHHH
Q 021380 270 -KRHISTGKPPDVAK 283 (313)
Q Consensus 270 -gr~v~~G~~~e~~~ 283 (313)
|+++..|+.+++..
T Consensus 413 ~G~ivy~G~~~~~~~ 427 (1470)
T PLN03140 413 EGQIVYQGPRDHILE 427 (1470)
T ss_pred CceEEEeCCHHHHHH
Confidence 89999998877653
No 360
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.93 E-value=8.9e-26 Score=243.94 Aligned_cols=188 Identities=12% Similarity=0.028 Sum_probs=142.4
Q ss_pred cccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhccc-CCCCceeeeCCCCC-------CCeEEEEeccCCCCCcc
Q 021380 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKASSFDSQVKP-------PDVATVLPMDGFHLYLS 165 (313)
Q Consensus 94 ~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~-~p~~G~i~~~~~~~-------~~~i~~v~q~~~~~~~~ 165 (313)
..+|+|+|+.+++|++++|+||||||||||||+|+|++... .|++|+|.++|.+. ++.++|++|++..++
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~-- 151 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP-- 151 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC--
Confidence 34999999999999999999999999999999999986210 17899999998642 234899999975444
Q ss_pred cCCcccCHHHHHHhcCC-------CCCccHHH-HHHHHHHhhcC--CC-----ccCCCCCccCCCcchhhhhcccCccEE
Q 021380 166 QLDAMEDPKEAHARRGA-------PWTFNPLL-LLNCLKNLRNQ--GS-----VYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 166 ~ltv~e~l~~~~~~~~~-------~~~~~~~~-~~~~l~~l~~~--~~-----~~~~~LSgGekqRv~la~al~~~a~~l 230 (313)
.+||.|++.+....+.. ......++ ...+++.++.. .+ ..+..|||||||||+||++++.+++++
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 48999999987654321 11111122 34567777743 22 245689999999999999999999999
Q ss_pred EEcCcccccCh----hhHHHHHHhhcC----eEEEEcCh-HHHHH---HHH----hhhhccCChhHHHH
Q 021380 231 IVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDL-DTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 231 i~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~-~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++|+|+..||. .+.+.|+++.+. +|+++|++ +.+.. +++ |+++..|++.++..
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~ 300 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQ 300 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHH
Confidence 99999999999 556666665532 46889996 45544 554 89999998877643
No 361
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.93 E-value=4.6e-26 Score=247.77 Aligned_cols=173 Identities=12% Similarity=0.139 Sum_probs=133.0
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHH
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~ 175 (313)
+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++| .++|++|++..+. .|++||+.+
T Consensus 441 ~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~---~~~G~i~~~g-----~iayv~Q~~~l~~---~Ti~eNI~~ 509 (1490)
T TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE---PSEGKIKHSG-----RISFSPQTSWIMP---GTIKDNIIF 509 (1490)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECC-----EEEEEeCCCccCC---ccHHHHHHh
Confidence 8999999999999999999999999999999999999 9999999987 4899999975432 499999987
Q ss_pred HHHhcCCCCCccHHH------HHHHHHHhhcCC----CccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHH
Q 021380 176 AHARRGAPWTFNPLL------LLNCLKNLRNQG----SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK 245 (313)
Q Consensus 176 ~~~~~~~~~~~~~~~------~~~~l~~l~~~~----~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~ 245 (313)
+... .. ..... +.+.++.+..+. ..+...||||||||++||+|+..+++++++|+|+..||.+..+
T Consensus 510 g~~~---~~-~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~ 585 (1490)
T TIGR01271 510 GLSY---DE-YRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEK 585 (1490)
T ss_pred cccc---ch-HHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 6321 10 01111 112222222222 2345699999999999999999999999999999999995555
Q ss_pred HHHH-----hhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 246 DVSS-----MFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 246 ~l~~-----l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
.+.+ +.. .+|+|||+++.+.. +++ |+++..|+.+++..
T Consensus 586 ~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 586 EIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred HHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 4443 222 35799999998765 554 78888888887754
No 362
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.91 E-value=4.9e-24 Score=213.61 Aligned_cols=204 Identities=12% Similarity=0.108 Sum_probs=157.1
Q ss_pred EEEccceeEccccc-cccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC-----CCCe
Q 021380 78 VEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----PPDV 151 (313)
Q Consensus 78 l~v~~ls~~y~~~~-~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~-----~~~~ 151 (313)
+..++++....++. ....+|++||..+++||+.||+||+|||||||+++|+|........+|+|.+||.. .++.
T Consensus 26 ~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~ 105 (613)
T KOG0061|consen 26 LSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKI 105 (613)
T ss_pred eEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhhe
Confidence 56667766664431 12339999999999999999999999999999999999996212478999999954 2356
Q ss_pred EEEEeccCCCCCcccCCcccCHHHHHHhcCC---CCCccHHHHHHHHHHhhcC--CCccCC-----CCCccCCCcchhhh
Q 021380 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGA---PWTFNPLLLLNCLKNLRNQ--GSVYAP-----SFDHGVGDPVEDDI 221 (313)
Q Consensus 152 i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~---~~~~~~~~~~~~l~~l~~~--~~~~~~-----~LSgGekqRv~la~ 221 (313)
.+|+.||+..++ .+||+|.+.+.+..+-. ...+..++++++++.++.. .+..++ .+|||||+||+||.
T Consensus 106 s~yV~QdD~l~~--~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~ 183 (613)
T KOG0061|consen 106 SGYVQQDDVLLP--TLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIAL 183 (613)
T ss_pred eEEEcccccccc--cccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHH
Confidence 999999986555 59999999998776521 2244556788899998843 455554 69999999999999
Q ss_pred hcccCccEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHH-HH---HHH----hhhhccCChhHHHH
Q 021380 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTA-MQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 222 al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~-~~---rvi----gr~v~~G~~~e~~~ 283 (313)
-++.++.+|++|||+..||- .+.+.|+++... +|++-|.+.-- .. +++ |+.+..|.+.+...
T Consensus 184 Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ 260 (613)
T KOG0061|consen 184 ELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLE 260 (613)
T ss_pred HHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHH
Confidence 99999999999999999999 566666666654 34666886533 22 555 99999999866544
No 363
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.91 E-value=1.3e-25 Score=183.59 Aligned_cols=122 Identities=19% Similarity=0.178 Sum_probs=99.1
Q ss_pred ccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC--------CeEEEEeccCCCCCcccCC
Q 021380 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--------DVATVLPMDGFHLYLSQLD 168 (313)
Q Consensus 97 L~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~--------~~i~~v~q~~~~~~~~~lt 168 (313)
|+||||+|++|++++|+|+||||||||+++|+|+++ |++|.|.+++.+.. ..++|++|+...+. .+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~t 75 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP---PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFP--GLT 75 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH---ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHT--TSB
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc---cccccccccccccccccccccccccccccccccccc--ccc
Confidence 689999999999999999999999999999999999 99999999986532 35999999944322 466
Q ss_pred cccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccC----CCCCccCCCcchhhhhcccCccEEEEcCcc
Q 021380 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYA----PSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (313)
Q Consensus 169 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~----~~LSgGekqRv~la~al~~~a~~li~d~~~ 236 (313)
+.++ .....+.++++.++.. .+..+ ..||+|||||++||++++.+++++++|+|+
T Consensus 76 v~~~-------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt 136 (137)
T PF00005_consen 76 VREN-------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPT 136 (137)
T ss_dssp HHHH-------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTT
T ss_pred cccc-------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 7666 2344567777777732 23444 899999999999999999999998888886
No 364
>PTZ00243 ABC transporter; Provisional
Probab=99.91 E-value=6e-25 Score=239.50 Aligned_cols=177 Identities=14% Similarity=0.102 Sum_probs=131.7
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHH
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~ 175 (313)
+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+. ..++|++|++.. ++ .|+.+|+.+
T Consensus 675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~---~~~G~i~~~-----~~i~yv~Q~~~l-~~--~Tv~enI~~ 743 (1560)
T PTZ00243 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE---ISEGRVWAE-----RSIAYVPQQAWI-MN--ATVRGNILF 743 (1560)
T ss_pred eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEEC-----CeEEEEeCCCcc-CC--CcHHHHHHc
Confidence 9999999999999999999999999999999999999 999999874 359999999754 32 699999987
Q ss_pred HHHhcC--CCCCccHHHHHHHHHHhhcC----CCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHH
Q 021380 176 AHARRG--APWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 249 (313)
Q Consensus 176 ~~~~~~--~~~~~~~~~~~~~l~~l~~~----~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~ 249 (313)
+..... .........+.+.++.+..+ ...+..+||||||||++||+|+..+++++++|+|+..||.+..+.+.+
T Consensus 744 ~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~ 823 (1560)
T PTZ00243 744 FDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVE 823 (1560)
T ss_pred CChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHH
Confidence 421000 00000001122333444211 234567999999999999999999999999999999999854333322
Q ss_pred -----hhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 250 -----MFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 250 -----l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
... .+|++|||++.+.. +++ |++++.|+.+++..
T Consensus 824 ~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 824 ECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred HHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 222 35799999999865 554 88888898887653
No 365
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.90 E-value=6.1e-24 Score=223.52 Aligned_cols=191 Identities=12% Similarity=0.127 Sum_probs=154.7
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEE
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 153 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~ 153 (313)
....++++|.+++.+.. ...+.|+||||+|++|+.+||+|+-|||||+|+..|.|.++ ..+|+|.++|. ++
T Consensus 515 ~~~~i~i~~~sfsW~~~-~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~---~~sG~v~v~gs-----ia 585 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDSE-SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP---KLSGSVAVNGS-----VA 585 (1381)
T ss_pred CCceEEEeeeeEecCCC-CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc---cccceEEEcCe-----EE
Confidence 34579999999998762 23348999999999999999999999999999999999999 99999999885 89
Q ss_pred EEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCCccC----CCCCccCCCcchhh
Q 021380 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVYA----PSFDHGVGDPVEDD 220 (313)
Q Consensus 154 ~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~~~~----~~LSgGekqRv~la 220 (313)
|++|.+..+. -|++||+.|+. .++.++..++++...+ +....+ -+||||||||+++|
T Consensus 586 Yv~Q~pWI~n---gTvreNILFG~-------~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLA 655 (1381)
T KOG0054|consen 586 YVPQQPWIQN---GTVRENILFGS-------PYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLA 655 (1381)
T ss_pred EeccccHhhC---CcHHHhhhcCc-------cccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHH
Confidence 9999976544 59999998752 3466777777776552 222233 38999999999999
Q ss_pred hhcccCccEEEEcCcccccChhhHHHHH-----Hhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVS-----SMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 221 ~al~~~a~~li~d~~~llLDE~~~~~l~-----~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
||+-.+|++.++|.|+.-+|.++-+.|- .+++ .+|+|||.++.... .++ |++.+.|+.+|+..
T Consensus 656 RAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 656 RAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred HHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHh
Confidence 9999999999999999999995433333 2332 35899999888776 444 99999999998874
No 366
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.90 E-value=9.7e-24 Score=187.44 Aligned_cols=167 Identities=13% Similarity=0.049 Sum_probs=99.4
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHH-HHHHHHhcccC-----CCC----ceeeeCC--CCCCCeEEEEeccCCCCC
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLA-AEVVRRINKIW-----PQK----ASSFDSQ--VKPPDVATVLPMDGFHLY 163 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLl-k~L~Gll~~~~-----p~~----G~i~~~~--~~~~~~i~~v~q~~~~~~ 163 (313)
+|++|||+|++||++||+|+||||||||+ ..|...-+..+ +.. |.+.... ........+..+++....
T Consensus 10 ~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (226)
T cd03270 10 NLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQKTTSR 89 (226)
T ss_pred ccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEEecCCCCCC
Confidence 99999999999999999999999999996 44332100000 000 0010000 000112233444433222
Q ss_pred cccCCccc---CHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhcccCc--cEEEEcCc
Q 021380 164 LSQLDAME---DPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGN 235 (313)
Q Consensus 164 ~~~ltv~e---~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~a--~~li~d~~ 235 (313)
++..++.. ...+....+ .. .......+.++.++.. .+.++.+|||||+||++||++++.++ +++++|+|
T Consensus 90 ~~~~~v~~~~~~~~~~~~~~--~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEP 166 (226)
T cd03270 90 NPRSTVGTVTEIYDYLRLLF--AR-VGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEP 166 (226)
T ss_pred CCCccHHHHHHHHHHHHHHh--hh-hhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 22223221 111111111 11 1122235677887742 46788899999999999999999887 69999999
Q ss_pred ccccChh----hHHHHHHhhc---CeEEEEcChHHHH
Q 021380 236 YLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAM 265 (313)
Q Consensus 236 ~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~ 265 (313)
+..||.. +.+.+.++.+ .+|++|||++++.
T Consensus 167 t~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~ 203 (226)
T cd03270 167 SIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIR 203 (226)
T ss_pred ccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHH
Confidence 9999994 4444444432 2579999998763
No 367
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.5e-24 Score=201.05 Aligned_cols=194 Identities=15% Similarity=0.130 Sum_probs=145.1
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
.+.+.+|++.|.... ++|+++||+++.|+.++|+|++|+||||++++|...+. +++|.|.++|++.
T Consensus 262 ~v~F~~V~F~y~~~r---~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD---~~sG~I~id~qdir~vtq~sl 335 (497)
T COG5265 262 AVAFINVSFAYDPRR---PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD---VNSGSITIDGQDIRDVTQQSL 335 (497)
T ss_pred eEEEEEEEeeccccc---hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC---CcCceEEEcchhHHHhHHHHH
Confidence 478999999997543 39999999999999999999999999999999999999 9999999999874
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHH--------HHHHHHHHhhcCCCccCC----CCCccCCCc
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPL--------LLLNCLKNLRNQGSVYAP----SFDHGVGDP 216 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~--------~~~~~l~~l~~~~~~~~~----~LSgGekqR 216 (313)
++.||.+|||... ++ -|...|+.++ .+..-+.+ .+...++.+-.+.+..++ .||||||||
T Consensus 336 R~aIg~VPQDtvL-FN--Dti~yni~yg-----r~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqr 407 (497)
T COG5265 336 RRAIGIVPQDTVL-FN--DTIAYNIKYG-----RPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQR 407 (497)
T ss_pred HHHhCcCccccee-hh--hhHHHHHhcc-----CccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHH
Confidence 3459999999643 33 3666666554 22211111 112222233233444444 899999999
Q ss_pred chhhhhcccCccEEEEcCcccccChhhHHHHHHhhc------CeEEEEcChHHHHH--HHH----hhhhccCChhHHHHH
Q 021380 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 217 v~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~------~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~~ 284 (313)
|+||++++.+|+++++|+-+.-||-+.-+.+...++ ..++|-|-+..+.. .++ |+++++|+-.+++..
T Consensus 408 vaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 408 VAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAA 487 (497)
T ss_pred HHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHc
Confidence 999888888888888888888888754444444333 25899999998776 444 999999998888764
No 368
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.89 E-value=2.6e-23 Score=197.89 Aligned_cols=179 Identities=17% Similarity=0.103 Sum_probs=138.9
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEE
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 153 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~ 153 (313)
+-|+|.++|+++.|.+.+ .++++++|-|..++.+++|||||+|||||||++.|.+. |..|.|.-.... .++
T Consensus 386 p~pvi~~~nv~F~y~~~~---~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~---p~~G~vs~~~H~---~~~ 456 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNP---MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ---PTIGMVSRHSHN---KLP 456 (614)
T ss_pred CCCeEEEeccccCCCCcc---hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc---cccccccccccc---cch
Confidence 457999999999998764 28899999999999999999999999999999999999 999998654322 244
Q ss_pred EEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhcccCccEE
Q 021380 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 154 ~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~a~~l 230 (313)
++.|.......-+.++.+++ ...+ +.....+.++.+|.++|.. ...++.+||+|||.||.+|+.+...+.+|
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~---~~~~--~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lL 531 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFM---MPKF--PDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLL 531 (614)
T ss_pred hhhhhhHhhcCcchhHHHHH---HHhc--cccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEE
Confidence 55555322111122333332 2222 2234567788999999954 45677799999999999999999999999
Q ss_pred EEcCcccccChhhHHHHHHhhcC----eEEEEcChHHHHH
Q 021380 231 IVDGNYLFLDGGVWKDVSSMFDE----KWFIEVDLDTAMQ 266 (313)
Q Consensus 231 i~d~~~llLDE~~~~~l~~l~~~----~i~vtHd~~~~~~ 266 (313)
++|+|+..||-+.++.+.+.+.+ +|+||||..++.+
T Consensus 532 lLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~q 571 (614)
T KOG0927|consen 532 LLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQ 571 (614)
T ss_pred EecCCCcCCCchhHHHHHHHHhccCCceeeeechhhHHHH
Confidence 99999999999777777776653 5799999988776
No 369
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.89 E-value=5.3e-24 Score=223.94 Aligned_cols=193 Identities=18% Similarity=0.206 Sum_probs=157.6
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
-|+++|++.+|.... ..+|+||||+|++||.|||+|..|||||||+..|-.+.. |.+|+|.+||.+.
T Consensus 1138 ~I~f~~~~~RYrp~l--p~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e---~~~G~I~IDgvdI~~igL~dL 1212 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNL--PLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE---PAEGEILIDGVDISKIGLHDL 1212 (1381)
T ss_pred eEEEEEeEEEeCCCC--cchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC---ccCCeEEEcCeecccccHHHH
Confidence 599999999997642 239999999999999999999999999999999999999 9999999999873
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccCC----CCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYAP----SFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~~----~LSgGekq 215 (313)
+.+++++|||+..+. =|++.|+.-.. .+..+.+-+.|+..+ .+.+..+. .+|-||||
T Consensus 1213 RsrlsIIPQdPvLFs---GTvR~NLDPf~-------e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQ 1282 (1381)
T KOG0054|consen 1213 RSRLSIIPQDPVLFS---GTVRFNLDPFD-------EYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQ 1282 (1381)
T ss_pred HhcCeeeCCCCceec---CccccccCccc-------ccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHH
Confidence 456999999987554 38998875432 233444555555543 23444433 89999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhcC--eEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~~--~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
.+++|||++.+.++|++||.+.-.|.+ +.+.|++.++. ++.|-|.++.+.. ||+ |++++.|+|.+++.
T Consensus 1283 LlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1283 LLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred HHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHh
Confidence 999999999999999999999999994 45556666654 4688999999998 777 99999999999876
Q ss_pred H
Q 021380 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
+
T Consensus 1363 ~ 1363 (1381)
T KOG0054|consen 1363 D 1363 (1381)
T ss_pred C
Confidence 5
No 370
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.89 E-value=1.8e-23 Score=173.64 Aligned_cols=190 Identities=17% Similarity=0.130 Sum_probs=138.1
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------ 149 (313)
.+++++||...- -|-.+|.++..||++-+|||||||||||+-.++|++ |.+|+|.++|.+..
T Consensus 2 ~l~qln~v~~~t--------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~----~~sGsi~~~G~~l~~~~~~e 69 (248)
T COG4138 2 ILMQLNDVAEST--------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT----SGSGSIQFAGQPLEAWSATE 69 (248)
T ss_pred ceeeeccccccc--------cccccccccccceEEEEECCCCccHHHHHHHHhCCC----CCCceEEECCcchhHHhHhH
Confidence 367888887553 356789999999999999999999999999999999 89999999998732
Q ss_pred --CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcc-
Q 021380 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVG- 224 (313)
Q Consensus 150 --~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~- 224 (313)
+.-+|+.|.... ...|.|+.++.+. .|.+.....+.++...++ +...+.+.+|||||-|||-+|..+.
T Consensus 70 LArhRAYLsQqq~p--~f~mpV~~YL~L~-----qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQ 142 (248)
T COG4138 70 LARHRAYLSQQQTP--PFAMPVWHYLTLH-----QPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ 142 (248)
T ss_pred HHHHHHHHhhccCC--cchhhhhhhhhhc-----CchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEE
Confidence 234677777432 2247777766542 333333344556666665 3445677799999999999976543
Q ss_pred ------cCccEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 225 ------LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 225 ------~~a~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
+.+++++.|+|..-||- .+-..+.+++.. +||.+||++..++ ++. |+.+..|..+|+...
T Consensus 143 v~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 143 ITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred ecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 35677888888888886 233344455554 4799999998877 333 888889998887644
No 371
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.88 E-value=1.8e-22 Score=175.53 Aligned_cols=145 Identities=11% Similarity=0.038 Sum_probs=106.8
Q ss_pred cc-cccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC---------ceeeeCCCCC-----CCeEEEEeccCC
Q 021380 96 PT-SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---------ASSFDSQVKP-----PDVATVLPMDGF 160 (313)
Q Consensus 96 iL-~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~---------G~i~~~~~~~-----~~~i~~v~q~~~ 160 (313)
-+ ++++|++.+| +++|+||||||||||+++|+|+++ +.. |++.+.+.+. ...+++++|++.
T Consensus 11 ~~~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~ 86 (197)
T cd03278 11 SFADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLG---EQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSD 86 (197)
T ss_pred CcCCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhc---cccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCC
Confidence 34 6789999999 999999999999999999999986 442 3566665542 356899999854
Q ss_pred CCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcc----cCccEEEEcCcc
Q 021380 161 HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNY 236 (313)
Q Consensus 161 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~----~~a~~li~d~~~ 236 (313)
.++ . .. ..+++.++++. ....+..+..||+|||||++++++++ .+++++++|+|+
T Consensus 87 ~~~----~-------------~~---~~~~~~~~l~~-~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~ 145 (197)
T cd03278 87 GRY----S-------------II---SQGDVSEIIEA-PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVD 145 (197)
T ss_pred Cce----e-------------EE---ehhhHHHHHhC-CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence 321 0 00 12345566666 44456677899999999999999986 466999999999
Q ss_pred cccChh----hHHHHHHhhc--CeEEEEcChHHHH
Q 021380 237 LFLDGG----VWKDVSSMFD--EKWFIEVDLDTAM 265 (313)
Q Consensus 237 llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~ 265 (313)
..||+. +.+.+.++.+ .+|++|||++.+.
T Consensus 146 ~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~ 180 (197)
T cd03278 146 AALDDANVERFARLLKEFSKETQFIVITHRKGTME 180 (197)
T ss_pred ccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHh
Confidence 999984 4444444432 2579999998763
No 372
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.6e-21 Score=179.74 Aligned_cols=178 Identities=18% Similarity=0.163 Sum_probs=125.7
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCC------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD------ 150 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~------ 150 (313)
-|+++|+.+.|.+.. .-+..||++|++||+|.|+|.||||||||+++|.|+.+ |++|+|.++|++...
T Consensus 322 ~lelrnvrfay~~~~---FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~---PqsG~I~ldg~pV~~e~ledY 395 (546)
T COG4615 322 TLELRNVRFAYQDNA---FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ---PQSGEILLDGKPVSAEQLEDY 395 (546)
T ss_pred ceeeeeeeeccCccc---ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC---CCCCceeECCccCCCCCHHHH
Confidence 599999999998753 15789999999999999999999999999999999999 999999999986421
Q ss_pred --eEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC-------CCccCCCCCccCCCcchhhh
Q 021380 151 --VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------GSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 151 --~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------~~~~~~~LSgGekqRv~la~ 221 (313)
.+.-||-| +++++ ...+.......+.+...|+++... .....-.||.|||+|+++-.
T Consensus 396 R~LfSavFsD-yhLF~-------------~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~ 461 (546)
T COG4615 396 RKLFSAVFSD-YHLFD-------------QLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLL 461 (546)
T ss_pred HHHHHHHhhh-HhhhH-------------hhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHH
Confidence 12334444 22221 122222223455666777776622 12233389999999999988
Q ss_pred hcccCccEEEEcCcccccCh--------hhHHHHHHhhcCeEEEEcChHHHHH--HHH----hhhhc
Q 021380 222 LVGLQHKVVIVDGNYLFLDG--------GVWKDVSSMFDEKWFIEVDLDTAMQ--RVL----KRHIS 274 (313)
Q Consensus 222 al~~~a~~li~d~~~llLDE--------~~~~~l~~l~~~~i~vtHd~~~~~~--rvi----gr~v~ 274 (313)
|++..-.++++|+.-.=-|+ ..+..+++.-+.++.||||-.--.. |++ |++++
T Consensus 462 AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e 528 (546)
T COG4615 462 ALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528 (546)
T ss_pred HHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceee
Confidence 87777777777777766666 3444455555556799999553222 555 77775
No 373
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=2.2e-21 Score=180.73 Aligned_cols=180 Identities=16% Similarity=0.128 Sum_probs=137.9
Q ss_pred ccCCCCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC
Q 021380 70 SQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP 149 (313)
Q Consensus 70 ~~~~~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~ 149 (313)
+....-|+|-+.+|++.|.+.. +++..++|-|.--..|+|+||||.||||||++|.|-+. |+.|+..-+..
T Consensus 579 p~~L~PPvLGlH~VtFgy~gqk---pLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~---P~~GE~RKnhr--- 649 (807)
T KOG0066|consen 579 PTKLNPPVLGLHDVTFGYPGQK---PLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD---PNDGELRKNHR--- 649 (807)
T ss_pred CCCCCCCeeecccccccCCCCC---chhhcccccccccceeEEECCCCccHHHHHHHHhcCCC---CCcchhhccce---
Confidence 3333557999999999995433 28899999999999999999999999999999999999 99998876543
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHH-HHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhccc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~ 225 (313)
-+||++.|... ..++..+..... .+.+..| .+.++..|..+|+. ...++..|||||+.||++|..-+.
T Consensus 650 L~iG~FdQh~~----E~L~~Eetp~EyLqr~FNlp----yq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~ 721 (807)
T KOG0066|consen 650 LRIGWFDQHAN----EALNGEETPVEYLQRKFNLP----YQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALG 721 (807)
T ss_pred eeeechhhhhH----HhhccccCHHHHHHHhcCCC----hHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcC
Confidence 24888888732 235555554333 2333333 45677888888843 345788999999999999888888
Q ss_pred CccEEEEcCcccccChhhHHHHHHhh----cCeEEEEcChHHHHH
Q 021380 226 QHKVVIVDGNYLFLDGGVWKDVSSMF----DEKWFIEVDLDTAMQ 266 (313)
Q Consensus 226 ~a~~li~d~~~llLDE~~~~~l~~l~----~~~i~vtHd~~~~~~ 266 (313)
.+++||+|+|+.-||-+.++.|.+.+ ..+|+||||..++.+
T Consensus 722 ~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeRLi~e 766 (807)
T KOG0066|consen 722 GPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDERLIVE 766 (807)
T ss_pred CCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecccceeee
Confidence 89999999999999986555555444 347899999877665
No 374
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.83 E-value=1.5e-20 Score=169.48 Aligned_cols=176 Identities=9% Similarity=0.063 Sum_probs=119.7
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-CceeeeCCC-C--------
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASSFDSQV-K-------- 147 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~-~G~i~~~~~-~-------- 147 (313)
|.++|. +.|.+.. ++.+ +. +.+++|+||||||||||+++|++++. +. .|++.+.+. +
T Consensus 6 ~~~~~f-~~~~~~~----~~~~----~~-~~~~~IvG~NGsGKStll~Ai~~ll~---~~~~~~~r~~~~~~li~~~~~~ 72 (251)
T cd03273 6 IILDGF-KSYATRT----VISG----FD-PQFNAITGLNGSGKSNILDAICFVLG---ITNLSTVRASNLQDLIYKRGQA 72 (251)
T ss_pred EEEeCc-cccCcCE----eecc----CC-CCeEEEECCCCCCHHHHHHHHHHHhc---ccccccccccCHHHHhhcCCCC
Confidence 566776 6666543 3222 22 56999999999999999999999997 65 356665443 1
Q ss_pred --CCCeEEEEeccCCC-------CCcccCCcccCHHHHHHhcC-C-CCCccHHHHHHHHHHhhcCC--------------
Q 021380 148 --PPDVATVLPMDGFH-------LYLSQLDAMEDPKEAHARRG-A-PWTFNPLLLLNCLKNLRNQG-------------- 202 (313)
Q Consensus 148 --~~~~i~~v~q~~~~-------~~~~~ltv~e~l~~~~~~~~-~-~~~~~~~~~~~~l~~l~~~~-------------- 202 (313)
....+++++|++.. ...+.+++.+++........ . ......+.+.++|+.++...
T Consensus 73 ~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~ 152 (251)
T cd03273 73 GITKASVTIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITK 152 (251)
T ss_pred CCcEEEEEEEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHH
Confidence 12368889998421 11235788887755322111 1 12234467788888887431
Q ss_pred --------CccCCCCCccCCCcchhhhhcc----cCccEEEEcCcccccCh----hhHHHHHHhhcC--eEEEEcChHHH
Q 021380 203 --------SVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTA 264 (313)
Q Consensus 203 --------~~~~~~LSgGekqRv~la~al~----~~a~~li~d~~~llLDE----~~~~~l~~l~~~--~i~vtHd~~~~ 264 (313)
+.++.+||+||+||+++|++++ .+++++++|+|+..||. .+++.+.++... +|++||+.+..
T Consensus 153 ~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~ 232 (251)
T cd03273 153 VLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMF 232 (251)
T ss_pred HHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHH
Confidence 2467799999999999999987 57899999999999998 444555554433 57999996555
Q ss_pred HH
Q 021380 265 MQ 266 (313)
Q Consensus 265 ~~ 266 (313)
..
T Consensus 233 ~~ 234 (251)
T cd03273 233 NN 234 (251)
T ss_pred Hh
Confidence 43
No 375
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.81 E-value=2.4e-20 Score=168.44 Aligned_cols=163 Identities=14% Similarity=0.074 Sum_probs=106.0
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHH-----HHhcc--cCCCCce-----------eeeCCCCCCC----e--
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV-----RRINK--IWPQKAS-----------SFDSQVKPPD----V-- 151 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~-----Gll~~--~~p~~G~-----------i~~~~~~~~~----~-- 151 (313)
.|+|||++|+.|.+++|.|++|||||||++.+. ..+.. ..|..++ |.++..+..+ .
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 799999999999999999999999999998663 11110 0022222 2333222100 0
Q ss_pred ----------------------------EEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--
Q 021380 152 ----------------------------ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-- 201 (313)
Q Consensus 152 ----------------------------i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~-- 201 (313)
+.|..++... ...+|+.|++.+..... ...+..++|+.++..
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~--v~~ltv~e~~~~~~~~~------~~~~~~~~L~~vgL~~l 161 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIAD--VLDMTVEEALEFFENIP------KIARKLQTLCDVGLGYI 161 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHH--HhcCCHHHHHHHHHhhh------hHHHHHHHHHHcCCchh
Confidence 1111111110 12356666665554322 124456777888743
Q ss_pred -CCccCCCCCccCCCcchhhhhcccC---ccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 202 -GSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 202 -~~~~~~~LSgGekqRv~la~al~~~---a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
.++++.+|||||+||+.||++++.+ ++++++|+|+..||.. +++.+.++.+ .+|++|||++++..
T Consensus 162 ~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~ 237 (261)
T cd03271 162 KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKC 237 (261)
T ss_pred hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 4677889999999999999999985 6999999999999993 4444444433 25799999998754
No 376
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.81 E-value=3.7e-19 Score=157.29 Aligned_cols=187 Identities=23% Similarity=0.309 Sum_probs=136.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 188 (313)
++||.|+||||||||++.|.+++. +..+ ...+.++++|+++..... ..+ ... ...++.|..++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~---~~~~---------~~~v~vi~~D~f~~~~~~--~~~-~~~-~~~~g~p~~~d~ 64 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS---RWPD---------HPNVELITTDGFLYPNKE--LIE-RGL-MDRKGFPESYDM 64 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh---hcCC---------CCcEEEEecCcccCcHHH--HHH-hhh-hhcCCCcccCCH
Confidence 589999999999999999999996 4211 112677999987654321 111 111 123556778888
Q ss_pred HHHHHHHHHhhc-CCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccCh-hhHHHHHHhhcCeEEEEcChHHHHH
Q 021380 189 LLLLNCLKNLRN-QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG-GVWKDVSSMFDEKWFIEVDLDTAMQ 266 (313)
Q Consensus 189 ~~~~~~l~~l~~-~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE-~~~~~l~~l~~~~i~vtHd~~~~~~ 266 (313)
+.+.+.|..+.. .....+|.||.....|+.-......+++++++||.+++.|+ .-|..+.++++..||++-|.+++..
T Consensus 65 ~~l~~~L~~l~~g~~~v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~~~~~ 144 (220)
T cd02025 65 EALLKFLKDIKSGKKNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEK 144 (220)
T ss_pred HHHHHHHHHHHCCCCcEEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHHHHHH
Confidence 888889998887 45778899999988887654444567899999999999985 5567789999999999999998765
Q ss_pred HHHhh----------hhc------cCChhH----HHHHHHHhcCCchH-HHHHhhcCCCCEEeccC
Q 021380 267 RVLKR----------HIS------TGKPPD----VAKWRIEYNDRPNA-ELIMKSKKNADLVIKSI 311 (313)
Q Consensus 267 rvigr----------~v~------~G~~~e----~~~~~~~~~~~~~~-~~i~~~~~~aD~i~~~~ 311 (313)
|++.| ... .|-+.+ .+...|++.++|+. +||.|++..||+||+..
T Consensus 145 rl~~R~~r~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~~~ 210 (220)
T cd02025 145 WYIKRFLKLRETAFSDPDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEKG 210 (220)
T ss_pred HHHHHHHHHHHHHHhCchhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEEeC
Confidence 44422 221 343222 23445778999999 59999999999999864
No 377
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.81 E-value=3.8e-20 Score=165.86 Aligned_cols=172 Identities=10% Similarity=0.027 Sum_probs=98.1
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcc-------------cCCCCc-----
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-------------IWPQKA----- 139 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~-------------~~p~~G----- 139 (313)
|+++|. |+|++.. ++++++ |++++|+||||||||||+++|++++.. ..+.+|
T Consensus 4 i~~~nf-ksy~~~~----~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~ 73 (243)
T cd03272 4 VIIQGF-KSYKDQT----VIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMS 73 (243)
T ss_pred EEEeCc-cCcccCc----ccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCce
Confidence 556654 4676665 788776 789999999999999999999966420 003344
Q ss_pred ---eeeeCCCC-----------CCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCc-----cHHHHHHHHHHhhc
Q 021380 140 ---SSFDSQVK-----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF-----NPLLLLNCLKNLRN 200 (313)
Q Consensus 140 ---~i~~~~~~-----------~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~-----~~~~~~~~l~~l~~ 200 (313)
++.+++.+ ..+.++++++.. .++....+..+. .......+..... ...++.+++.. ..
T Consensus 74 ~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~-~l~~~~~t~~ei-~~~l~~~gl~~~~~~~~~~qg~i~~l~~l-~~ 150 (243)
T cd03272 74 AYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEY-FLDKKNVTKNDV-MNLLESAGFSRSNPYYIVPQGKINSLTNM-KQ 150 (243)
T ss_pred EEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEE-EECCeEcCHHHH-HHHHHHcCCCCCCCcEEEEcCchHHhhhc-cc
Confidence 33333211 011244444332 111112233222 2222222322110 01122222211 12
Q ss_pred CCCccCCCCCccCCCcchhhhhcc----cCccEEEEcCcccccCh----hhHHHHHHhhc-Ce-EEEEcChH
Q 021380 201 QGSVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDG----GVWKDVSSMFD-EK-WFIEVDLD 262 (313)
Q Consensus 201 ~~~~~~~~LSgGekqRv~la~al~----~~a~~li~d~~~llLDE----~~~~~l~~l~~-~~-i~vtHd~~ 262 (313)
..+.++..|||||+||++||++++ .++.++++|+|+..||. .+++.+.++.+ .. |++||+.+
T Consensus 151 ~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~ 222 (243)
T cd03272 151 DEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPE 222 (243)
T ss_pred cccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 235677799999999999999996 35899999999999999 44455555543 23 45566644
No 378
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.80 E-value=8.6e-19 Score=152.15 Aligned_cols=183 Identities=28% Similarity=0.397 Sum_probs=145.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCC
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT 185 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~ 185 (313)
+.-+|||.|++||||||+.+.|.-.++ . ..+..++||+|+......+..++ ....+..|.+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~---~-------------~~~~~I~~D~YYk~~~~~~~~~~---~~~n~d~p~A 67 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLG---V-------------EKVVVISLDDYYKDQSHLPFEER---NKINYDHPEA 67 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhC---c-------------CcceEeeccccccchhhcCHhhc---CCcCccChhh
Confidence 457999999999999999999999996 1 13678999988765443333222 1234667888
Q ss_pred ccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChHHHH
Q 021380 186 FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAM 265 (313)
Q Consensus 186 ~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~~~ 265 (313)
++.+.+.+.|..+..+.....|.||.-+..|.. -..-..+.++++++|-+++.| +.++++++-.|||.-|.+...
T Consensus 68 ~D~dLl~~~L~~L~~g~~v~~P~yd~~~~~r~~-~~i~~~p~~VVIvEGi~~l~d----~~lr~~~d~kIfvdtd~D~Rl 142 (218)
T COG0572 68 FDLDLLIEHLKDLKQGKPVDLPVYDYKTHTREP-ETIKVEPNDVVIVEGILLLYD----ERLRDLMDLKIFVDTDADVRL 142 (218)
T ss_pred hcHHHHHHHHHHHHcCCcccccccchhcccccC-CccccCCCcEEEEeccccccc----HHHHhhcCEEEEEeCCccHHH
Confidence 899999999999988888888888887777763 122445689999999999999 588889999999999999888
Q ss_pred HHHHhhhhc-cCChhHHHHHHHHhcCCchHH-HHHhhcCCCCEEeccCC
Q 021380 266 QRVLKRHIS-TGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 312 (313)
Q Consensus 266 ~rvigr~v~-~G~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~~ 312 (313)
.|.+-|++. +|...+-+..+|...++|+++ ||+|+++.||+|++...
T Consensus 143 iRri~RD~~~rg~~~e~vi~qy~~~vkp~~~~fIeptk~~ADiiip~~~ 191 (218)
T COG0572 143 IRRIKRDVQERGRDLESVIEQYVKTVRPMYEQFIEPTKKYADIIIPSGG 191 (218)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhChhhhhccCcccccceEEeecCC
Confidence 877766665 787666666667778899988 99999999999998753
No 379
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.80 E-value=4.3e-19 Score=173.94 Aligned_cols=174 Identities=14% Similarity=0.002 Sum_probs=131.9
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEE
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~ 154 (313)
...|+++||+..-++.. ..|++++|+|++|+.+-|.|+||||||||+|.|+|+-+ --+|+|..-. ...+.|
T Consensus 390 ~~~i~~~nl~l~~p~~~---~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP---~g~G~I~~P~---~~~~lf 460 (604)
T COG4178 390 DHGITLENLSLRTPDGQ---TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWP---WGSGRISMPA---DSALLF 460 (604)
T ss_pred cceeEEeeeeEECCCCC---eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCc---cCCCceecCC---CCceEE
Confidence 35799999999987643 38999999999999999999999999999999999997 6778887642 234789
Q ss_pred EeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--------CCccCCCCCccCCCcchhhhhcccC
Q 021380 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--------GSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 155 v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--------~~~~~~~LSgGekqRv~la~al~~~ 226 (313)
+||.+|. +. -|.+|-+.++.. ......+.+.++|..++.+ .+.--..||+|||||+++|+.+.+.
T Consensus 461 lpQ~PY~-p~--GtLre~l~YP~~----~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~k 533 (604)
T COG4178 461 LPQRPYL-PQ--GTLREALCYPNA----APDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHK 533 (604)
T ss_pred ecCCCCC-CC--ccHHHHHhCCCC----CCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcC
Confidence 9999753 32 266665554321 1125667778888887732 1222339999999999999999999
Q ss_pred ccEEEEcCcccccChhhHHHHHHhhcC------eEEEEcChHHH
Q 021380 227 HKVVIVDGNYLFLDGGVWKDVSSMFDE------KWFIEVDLDTA 264 (313)
Q Consensus 227 a~~li~d~~~llLDE~~~~~l~~l~~~------~i~vtHd~~~~ 264 (313)
|+.+++||-+.-|||+....+.+++++ +|.|.|-....
T Consensus 534 P~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~ 577 (604)
T COG4178 534 PKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLW 577 (604)
T ss_pred CCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhH
Confidence 999999999999999555555444432 46788876554
No 380
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.80 E-value=9.4e-20 Score=170.69 Aligned_cols=172 Identities=15% Similarity=0.114 Sum_probs=121.1
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEE
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~ 154 (313)
..+++..+++|.||+.. |.-=.=+|..||++|++||||-|||||.++|+|.++ |++|. . ..-.++|
T Consensus 340 ~~lv~y~~~~k~~g~F~-----L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik---Pdeg~-~-----~~~~vSy 405 (591)
T COG1245 340 DTLVEYPDLKKTYGDFK-----LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK---PDEGS-E-----EDLKVSY 405 (591)
T ss_pred ceeeecchheeecCceE-----EEecCCeeecceEEEEECCCCcchHHHHHHHhcccc---CCCCC-C-----ccceEee
Confidence 34677888888888753 333344678899999999999999999999999999 99997 1 1223677
Q ss_pred EeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcccCccEEEE
Q 021380 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (313)
Q Consensus 155 v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~~a~~li~ 232 (313)
=||--. +....||.+.+.-..... .. +...-.++++.+. ...++.+..|||||.|||+||.+|+.+|++.++
T Consensus 406 KPQyI~--~~~~gtV~~~l~~~~~~~-~~---~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYll 479 (591)
T COG1245 406 KPQYIS--PDYDGTVEDLLRSAIRSA-FG---SSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLL 479 (591)
T ss_pred cceeec--CCCCCcHHHHHHHhhhhh-cc---cchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEe
Confidence 776522 222467776554332210 11 1111234555554 345788999999999999999999999999999
Q ss_pred cCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 233 DGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 233 d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
|+|-..||-+ +-+.|+.... ..++|.||+-++..
T Consensus 480 DEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dy 521 (591)
T COG1245 480 DEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDY 521 (591)
T ss_pred cCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhh
Confidence 9999999973 2333333332 24799999877654
No 381
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=3.1e-19 Score=169.33 Aligned_cols=190 Identities=12% Similarity=0.031 Sum_probs=122.4
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEe
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~ 156 (313)
-|.+.+++..||++. +|.+-++++..|..+||+|+||+|||||||+|+.-.-..+|..-++. .-++.
T Consensus 80 Di~~~~fdLa~G~k~----LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~---------g~~t~ 146 (582)
T KOG0062|consen 80 DIHIDNFDLAYGGKI----LLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVR---------GDDTE 146 (582)
T ss_pred ceeeeeeeeeecchh----hhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhhee---------ccchH
Confidence 478889999999988 99999999999999999999999999999999871100012111111 11111
Q ss_pred ccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHH-HHHHhhcC---CCccCCCCCccCCCcchhhhhcccCccEEEE
Q 021380 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN-CLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (313)
Q Consensus 157 q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~-~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~a~~li~ 232 (313)
-.... ...++.+.+ |...-.........+.+.. +|.-+|.. ..+++..||||.|.|++||+|+..+|++|++
T Consensus 147 ~~~~~-l~~D~~~~d---fl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLL 222 (582)
T KOG0062|consen 147 ALQSV-LESDTERLD---FLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLL 222 (582)
T ss_pred HHhhh-hhccHHHHH---HHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEee
Confidence 11000 001111111 1111100111112222333 67777733 3567789999999999999999999999999
Q ss_pred cCcccccChhhHHHHHHhhcC----eEEEEcChHHHHH---HHH---hhhh--ccCChhHHHH
Q 021380 233 DGNYLFLDGGVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL---KRHI--STGKPPDVAK 283 (313)
Q Consensus 233 d~~~llLDE~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi---gr~v--~~G~~~e~~~ 283 (313)
|+|+..||-.....|..++.. .++||||...+.. -|| ++.+ ..|+-+++..
T Consensus 223 DEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk 285 (582)
T KOG0062|consen 223 DEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVK 285 (582)
T ss_pred cCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHH
Confidence 999999998766666666543 5799999888765 444 3222 3566555443
No 382
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.79 E-value=1.7e-19 Score=154.03 Aligned_cols=209 Identities=13% Similarity=0.184 Sum_probs=149.2
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccC-CCCceeeeCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIW-PQKASSFDSQVK------ 147 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~-p~~G~i~~~~~~------ 147 (313)
|+.|.+.|++..+....+.+++++++|+++++||+-|++|.+|||||-..|.|+|..+..| -+.....+++.+
T Consensus 1 M~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~P 80 (330)
T COG4170 1 MPLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred CCcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCCh
Confidence 6788999999999766566779999999999999999999999999999999999986333 223334455433
Q ss_pred ------CCCeEEEEeccCCCCCcccCCccc----CHHHHHHhcCC---CCCccHHHHHHHHHHhhcCCC-----ccCCCC
Q 021380 148 ------PPDVATVLPMDGFHLYLSQLDAME----DPKEAHARRGA---PWTFNPLLLLNCLKNLRNQGS-----VYAPSF 209 (313)
Q Consensus 148 ------~~~~i~~v~q~~~~~~~~~ltv~e----~l~~~~~~~~~---~~~~~~~~~~~~l~~l~~~~~-----~~~~~L 209 (313)
..+.++++||++....++..++-. |+-... +.|. ...+...++.++|.++|...+ .++.+|
T Consensus 81 r~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wT-fkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~El 159 (330)
T COG4170 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWT-YKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYEL 159 (330)
T ss_pred HHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCcccc-ccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchh
Confidence 123478899997655443323221 111100 0010 012345667889999995443 356699
Q ss_pred CccCCCcchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc---C-eEEEEcChHHHHH---HH--H--hhhhc
Q 021380 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD---E-KWFIEVDLDTAMQ---RV--L--KRHIS 274 (313)
Q Consensus 210 SgGekqRv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~---~-~i~vtHd~~~~~~---rv--i--gr~v~ 274 (313)
--||-|+|.||.|++..+++|+.|+|+.-+++-. ...+..+.. . +++++||+..+.+ ++ + |+.++
T Consensus 160 TeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~E 239 (330)
T COG4170 160 TEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVE 239 (330)
T ss_pred ccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEeccccc
Confidence 9999999999999999999999999999999833 333333322 2 4699999999887 22 1 89999
Q ss_pred cCChhHHHHH
Q 021380 275 TGKPPDVAKW 284 (313)
Q Consensus 275 ~G~~~e~~~~ 284 (313)
.+..+++++.
T Consensus 240 Sa~~e~l~~~ 249 (330)
T COG4170 240 SAPSEELVTM 249 (330)
T ss_pred ccchhHHhcC
Confidence 9988888764
No 383
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.79 E-value=2.5e-19 Score=170.80 Aligned_cols=192 Identities=15% Similarity=0.066 Sum_probs=126.8
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEe
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~ 156 (313)
-+.++|+++.|.+.. +++|++|++.+|+.+||+|+|||||||+|++|.|-.. |..-.+. +.+
T Consensus 75 dvk~~sls~s~~g~~----l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~---P~p~~~d-----------~y~ 136 (614)
T KOG0927|consen 75 DVKIESLSLSFHGVE----LIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREV---PIPEHID-----------FYL 136 (614)
T ss_pred cceeeeeeeccCCce----eeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCC---CCCcccc-----------hhh
Confidence 589999999999888 9999999999999999999999999999999999987 6433222 111
Q ss_pred ccCCCCCcccCCcccCHH-----------HHHHhcCC--------------------CCCccHHHHHHHHHHhh---cCC
Q 021380 157 MDGFHLYLSQLDAMEDPK-----------EAHARRGA--------------------PWTFNPLLLLNCLKNLR---NQG 202 (313)
Q Consensus 157 q~~~~~~~~~ltv~e~l~-----------~~~~~~~~--------------------~~~~~~~~~~~~l~~l~---~~~ 202 (313)
.+....+. ..++.+.+. .....+.. .......++..+|..++ ...
T Consensus 137 ls~e~~ps-~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~ 215 (614)
T KOG0927|consen 137 LSREIEPS-EKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQ 215 (614)
T ss_pred hcccCCCc-hHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHH
Confidence 11111111 111111111 11111100 00011122233333333 234
Q ss_pred CccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhh---cC--eEEEEcChHHHHH---HHH----h
Q 021380 203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF---DE--KWFIEVDLDTAMQ---RVL----K 270 (313)
Q Consensus 203 ~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~---~~--~i~vtHd~~~~~~---rvi----g 270 (313)
++.+..||||+++|++||+++...+.+|++|+|+..||-+....|.+++ +. .++++|+.+.+-. .|+ +
T Consensus 216 ~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~k 295 (614)
T KOG0927|consen 216 DKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNK 295 (614)
T ss_pred HHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheeccc
Confidence 5678899999999999999999999999999999999996666666554 33 4699999999877 555 4
Q ss_pred hhh-ccCChhHHHHHHHH
Q 021380 271 RHI-STGKPPDVAKWRIE 287 (313)
Q Consensus 271 r~v-~~G~~~e~~~~~~~ 287 (313)
+.+ ..|+-+..+..+-+
T Consensus 296 kl~~y~Gnydqy~~tr~E 313 (614)
T KOG0927|consen 296 KLIYYEGNYDQYVKTRSE 313 (614)
T ss_pred ceeeecCCHHHHhhHHHH
Confidence 433 45666555443333
No 384
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.79 E-value=2e-19 Score=186.25 Aligned_cols=210 Identities=12% Similarity=0.016 Sum_probs=156.0
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----CCe
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PDV 151 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-----~~~ 151 (313)
+.-..|+.+....+.+...+|+||+=-+.+|-..||+|+|||||||||++|+|.... .-.+|+|.++|.+. ++.
T Consensus 787 V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~-G~I~Gdi~i~G~p~~q~tF~R~ 865 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG-GYIEGDILISGFPKDQETFARV 865 (1391)
T ss_pred eEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCccc-ceEEeEEEECCeeCchhhhccc
Confidence 455556655552222334499999999999999999999999999999999998641 14578999999764 367
Q ss_pred EEEEeccCCCCCcccCCcccCHHHHHHhcCCCC---CccHHHHHHHHHHhhcC--CCccCC----CCCccCCCcchhhhh
Q 021380 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW---TFNPLLLLNCLKNLRNQ--GSVYAP----SFDHGVGDPVEDDIL 222 (313)
Q Consensus 152 i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~---~~~~~~~~~~l~~l~~~--~~~~~~----~LSgGekqRv~la~a 222 (313)
+||+.|++.+.+ .+||+|-+.+.+.++.... .+..+.++++++.+++. .+.-++ -||..||+|+.|+.-
T Consensus 866 ~GYvqQ~DiH~~--~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVE 943 (1391)
T KOG0065|consen 866 SGYVEQQDIHSP--ELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVE 943 (1391)
T ss_pred cceeecccccCc--ccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEE
Confidence 999999988765 5999999999887763222 22235577888888754 454454 499999999999999
Q ss_pred cccCc-cEEEEcCcccccCh----hhHHHHHHhhcCe--EE-EEcChHHH-HH---HHH-----hhhhccCChhHH---H
Q 021380 223 VGLQH-KVVIVDGNYLFLDG----GVWKDVSSMFDEK--WF-IEVDLDTA-MQ---RVL-----KRHISTGKPPDV---A 282 (313)
Q Consensus 223 l~~~a-~~li~d~~~llLDE----~~~~~l~~l~~~~--i~-vtHd~~~~-~~---rvi-----gr~v~~G~~~e~---~ 282 (313)
|+.+| .+|.+|||+.+||- .+.+.++++.+.+ |+ .-|.+.-. .+ |++ |+.|..|+..+- +
T Consensus 944 LvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~l 1023 (1391)
T KOG0065|consen 944 LVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKL 1023 (1391)
T ss_pred EecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHH
Confidence 98888 88899999999998 5667777777653 54 44775532 22 555 899988876663 3
Q ss_pred HHHHHhc
Q 021380 283 KWRIEYN 289 (313)
Q Consensus 283 ~~~~~~~ 289 (313)
..|++..
T Consensus 1024 i~YFes~ 1030 (1391)
T KOG0065|consen 1024 IEYFESI 1030 (1391)
T ss_pred HHHHHhc
Confidence 4566643
No 385
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.78 E-value=2.2e-19 Score=158.03 Aligned_cols=165 Identities=12% Similarity=0.029 Sum_probs=105.7
Q ss_pred eEEEccceeEccccccccccccccceeec-CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeC-------CCCC
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVN-VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS-------QVKP 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~-~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~-------~~~~ 148 (313)
-|+++|+. .|.+. .+|+|... +|++++|+||||||||||+++|++.+-. +..+....+ ....
T Consensus 5 ~i~l~nf~-~y~~~-------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g--~~~~~~~~~~~~~~~~~~~~ 74 (213)
T cd03279 5 KLELKNFG-PFREE-------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYG--KTPRYGRQENLRSVFAPGED 74 (213)
T ss_pred EEEEECCc-CcCCc-------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEec--CccccccchhHHHHhcCCCc
Confidence 37888988 66443 24566544 5899999999999999999999965421 333333321 1122
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHH--HHHHh--hcCCCccCCCCCccCCCcchhhhhcc
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN--CLKNL--RNQGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~--~l~~l--~~~~~~~~~~LSgGekqRv~la~al~ 224 (313)
...+++++|+.... .++..+. +. +.+.+.+ .+... ....+.++..||+||+||++++++++
T Consensus 75 ~~~v~~~f~~~~~~----~~~~r~~-------gl----~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~ 139 (213)
T cd03279 75 TAEVSFTFQLGGKK----YRVERSR-------GL----DYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALA 139 (213)
T ss_pred cEEEEEEEEECCeE----EEEEEec-------CC----CHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHH
Confidence 34578888875321 2222221 22 1122211 11211 23346678899999999999999997
Q ss_pred c----------CccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 225 L----------QHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 225 ~----------~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
. +++++++|+|+..+|.. +.+.+.++.+ .+|++|||++.+..
T Consensus 140 ~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~ 198 (213)
T cd03279 140 LSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKER 198 (213)
T ss_pred hHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHh
Confidence 4 46899999999999984 3444444433 25799999987754
No 386
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.78 E-value=1.8e-18 Score=158.09 Aligned_cols=192 Identities=20% Similarity=0.326 Sum_probs=139.5
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~ 184 (313)
+...++||.||||||||||+++|.+++.. +|++|. +.++.+|+++.... ..+... ....++.|.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~-~~~~g~-----------V~vi~~D~f~~~~~---~l~~~g-~~~~~g~P~ 123 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSR-WPEHRK-----------VELITTDGFLHPNQ---VLKERN-LMKKKGFPE 123 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh-cCCCCc-----------eEEEecccccccHH---HHHHcC-CccccCCCh
Confidence 45679999999999999999999999962 244443 45678887765432 111111 113456788
Q ss_pred CccHHHHHHHHHHhhcCCC-ccCCCCCccCCCcchhhhhcccCccEEEEcCcccccCh------hhHHHHHHhhcCeEEE
Q 021380 185 TFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG------GVWKDVSSMFDEKWFI 257 (313)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~-~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE------~~~~~l~~l~~~~i~v 257 (313)
.++...+.+.+..+..+.. ..+|.||.....++.-......+++++++||.+++.++ ..+..+.+++|..|||
T Consensus 124 s~D~~~l~~~L~~Lk~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~Iyv 203 (290)
T TIGR00554 124 SYDMHRLVKFLSDLKSGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYV 203 (290)
T ss_pred hccHHHHHHHHHHHHCCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEEEE
Confidence 8888888888888887654 78889998887777654445578999999999988654 4577788999999999
Q ss_pred EcChHHHHHHHHhhhh-----c-----------cCChh-H---HHHHHHHhcCCchHH-HHHhhcCCCCEEeccCC
Q 021380 258 EVDLDTAMQRVLKRHI-----S-----------TGKPP-D---VAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 312 (313)
Q Consensus 258 tHd~~~~~~rvigr~v-----~-----------~G~~~-e---~~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~~ 312 (313)
.-|.+.+.+|.+.|.. . .|-+. + ...+.|+....++.. ||+|++.+||+|++...
T Consensus 204 Da~~d~~~~w~i~R~~~l~~~~~~~~~s~~~~~~~~~~~ea~~~~~~~w~~~~~~nl~~~I~Ptr~rAdlIl~~~~ 279 (290)
T TIGR00554 204 DAEEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLSKEEAIKTAMTIWKEINWLNLKQNILPTRERASLILTKGA 279 (290)
T ss_pred ECCHHHHHHHHHHHHHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHHcchhhHHhhCCCCcccccEEEecCC
Confidence 9999988875553321 1 02222 2 234568888999985 99999999999998654
No 387
>PTZ00301 uridine kinase; Provisional
Probab=99.78 E-value=4.4e-18 Score=149.12 Aligned_cols=185 Identities=23% Similarity=0.334 Sum_probs=138.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCcc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN 187 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~ 187 (313)
-+|||.|++|||||||.+.|...+. -..| ...+.++++|+|+.....+... ......++.|..++
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~---~~~~---------~~~~~vi~~D~yy~~~~~~~~~---~~~~~~~d~p~a~D 68 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELM---AHCG---------PVSIGVICEDFYYRDQSNIPES---ERAYTNYDHPKSLE 68 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHH---hhcC---------CCeEEEeCCCCCccCcccCCHH---HhcCCCCCChhhhC
Confidence 5899999999999999999987663 1111 1225678899876543222211 11223567788888
Q ss_pred HHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChHHHHHH
Q 021380 188 PLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQR 267 (313)
Q Consensus 188 ~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~~~~r 267 (313)
.+.+.+.|..+..+....+|.|+.....|..-. ....+..++++||.+++.++ .+.++++..||++.+.++...|
T Consensus 69 ~~~l~~~l~~L~~g~~i~~P~yd~~~~~~~~~~-~~i~p~~ViIvEGi~~l~~~----~l~~l~D~~ifvd~~~d~~~~R 143 (210)
T PTZ00301 69 HDLLTTHLRELKSGKTVQIPQYDYVHHTRSDTA-VTMTPKSVLIVEGILLFTNA----ELRNEMDCLIFVDTPLDICLIR 143 (210)
T ss_pred HHHHHHHHHHHHcCCcccCCCcccccCCcCCce-EEeCCCcEEEEechhhhCCH----HHHHhCCEEEEEeCChhHHHHH
Confidence 888988888888777778888887766665422 23456799999999998784 6777888899999999999988
Q ss_pred HHhhhhc-cCChhHHHHHHHHhcCCchHH-HHHhhcCCCCEEeccCC
Q 021380 268 VLKRHIS-TGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 312 (313)
Q Consensus 268 vigr~v~-~G~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~~ 312 (313)
.+.|++. +|.+.+-+...|...+.+++. ||.|++..||+|++...
T Consensus 144 r~~Rd~~~rG~~~e~v~~~~~~~v~~~~~~~I~p~k~~ADiIi~~~~ 190 (210)
T PTZ00301 144 RAKRDMRERGRTFESVIEQYEATVRPMYYAYVEPSKVYADIIVPSWK 190 (210)
T ss_pred HHhhhHHhcCCCHHHHHHHHHHhhcccHHHHcCccccCCcEEEcCCC
Confidence 8888876 788888777767776666665 99999999999998653
No 388
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.78 E-value=2e-20 Score=164.52 Aligned_cols=166 Identities=12% Similarity=0.074 Sum_probs=104.7
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEec
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q 157 (313)
|+++|.. .|++.. ++++++| +++||+||||||||||+++|.-.+. .+.... ..+.++++++
T Consensus 6 l~l~nfk-~~~~~~----~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G---~~~~~~------~~~~i~~~~~ 66 (212)
T cd03274 6 LVLENFK-SYAGEQ----VIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFG---FRASKM------RQKKLSDLIH 66 (212)
T ss_pred EEEECcc-cCCCCe----eeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhc---cCHHHh------hhhhHHHHhc
Confidence 6778876 888777 8999987 7999999999999999999985442 110000 1123566666
Q ss_pred cCCCCCcccCCcccCHHHHHHh--------cCCCCCccHH--HHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhccc
Q 021380 158 DGFHLYLSQLDAMEDPKEAHAR--------RGAPWTFNPL--LLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 158 ~~~~~~~~~ltv~e~l~~~~~~--------~~~~~~~~~~--~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
.....+ .+++.+...+.... ++........ ...++++.++ ...++++..||+||+||+++|++++.
T Consensus 67 ~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~ 144 (212)
T cd03274 67 NSAGHP--NLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFAL 144 (212)
T ss_pred CCCCCC--CCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHh
Confidence 543222 35555554443221 2222111000 0022223333 33455677999999999999999863
Q ss_pred ----CccEEEEcCcccccChh----hHHHHHHhhcC--eEEEEcChHHH
Q 021380 226 ----QHKVVIVDGNYLFLDGG----VWKDVSSMFDE--KWFIEVDLDTA 264 (313)
Q Consensus 226 ----~a~~li~d~~~llLDE~----~~~~l~~l~~~--~i~vtHd~~~~ 264 (313)
+++++++|+|+..||.. +++.+.++.+. +|++||+.+..
T Consensus 145 ~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~ 193 (212)
T cd03274 145 HHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMF 193 (212)
T ss_pred cccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHH
Confidence 57999999999999984 44444444332 47999996543
No 389
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.78 E-value=6e-19 Score=169.81 Aligned_cols=190 Identities=18% Similarity=0.181 Sum_probs=147.9
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC----
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 149 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~---- 149 (313)
+.++++++|++..- .++|+||++.+|||+||.|-=|||+|-|++.|.|..+ +.+|+|.++|++..
T Consensus 260 ~~~~l~v~~l~~~~--------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~---~~~G~i~l~G~~v~~~sp 328 (500)
T COG1129 260 GEPVLEVRNLSGGG--------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP---ASSGEILLDGKPVRIRSP 328 (500)
T ss_pred CCcEEEEecCCCCC--------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc---CCCceEEECCEEccCCCH
Confidence 35678899887542 4789999999999999999999999999999999888 89999999997532
Q ss_pred -----CeEEEEeccCCC-CCcccCCcccCHHHHHH-h-cC---CCCCccHHHHHHHHHHhh---cCCCccCCCCCccCCC
Q 021380 150 -----DVATVLPMDGFH-LYLSQLDAMEDPKEAHA-R-RG---APWTFNPLLLLNCLKNLR---NQGSVYAPSFDHGVGD 215 (313)
Q Consensus 150 -----~~i~~v~q~~~~-~~~~~ltv~e~l~~~~~-~-~~---~~~~~~~~~~~~~l~~l~---~~~~~~~~~LSgGekq 215 (313)
.-++|++.|.-. -....+++.+|+.+... . .. .......+.+.++.+.+. ...+..+..||||.||
T Consensus 329 ~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQ 408 (500)
T COG1129 329 RDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQ 408 (500)
T ss_pred HHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhh
Confidence 248999988421 11124789999887621 1 11 112222334556666666 3456788899999999
Q ss_pred cchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHHH---HHH----hhhhc
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHIS 274 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rvi----gr~v~ 274 (313)
+|.||++++.++++|++|+|+-..|- ++++.|.++.+. +|++|-+++++.. |++ ||++.
T Consensus 409 KVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 409 KVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVG 481 (500)
T ss_pred hHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999998 777777777766 4699999999987 766 77775
No 390
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.75 E-value=2.1e-18 Score=165.67 Aligned_cols=183 Identities=13% Similarity=-0.013 Sum_probs=123.7
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEE
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v 155 (313)
++|++++|+..-+.. +..+++|+||+|..|+-+.|.||||||||.|+|+|+|+-+ ..+|++..-.....+.+.|+
T Consensus 432 n~i~~e~v~l~tPt~--g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp---~~~G~l~k~~~~~~~~lffl 506 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTN--GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP---STGGKLTKPTDGGPKDLFFL 506 (659)
T ss_pred ceEEeeeeeecCCCC--CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc---cCCCeEEecccCCCCceEEe
Confidence 589999999988653 2337789999999999999999999999999999999986 68999876543333558899
Q ss_pred eccCCCCCcccCCcccCHHHHHHh-cCCCCCccHHHHHHHHHHhhc--------CCC----c-cCCCCCccCCCcchhhh
Q 021380 156 PMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRN--------QGS----V-YAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 156 ~q~~~~~~~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~l~~--------~~~----~-~~~~LSgGekqRv~la~ 221 (313)
||-+|... =|.++.+-++... .......+.+.+...|+.++. +.+ . -...||+||+||+++|+
T Consensus 507 PQrPYmt~---GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~AR 583 (659)
T KOG0060|consen 507 PQRPYMTL---GTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFAR 583 (659)
T ss_pred cCCCCccc---cchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHH
Confidence 99976433 2778877776321 111222344555566655542 122 1 23499999999999955
Q ss_pred hcccCccEEEEcCcccccChhhHHHHHHhhcC----eEEEEcChHHHHH
Q 021380 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE----KWFIEVDLDTAMQ 266 (313)
Q Consensus 222 al~~~a~~li~d~~~llLDE~~~~~l~~l~~~----~i~vtHd~~~~~~ 266 (313)
.+.+.|+.-++|+.+.-+||++-..+-+.+.+ .|-|+|-..+..-
T Consensus 584 Lfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~kf 632 (659)
T KOG0060|consen 584 LFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWKF 632 (659)
T ss_pred HHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHhh
Confidence 55555555555555555555444444444432 3567787766544
No 391
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.75 E-value=3.8e-17 Score=145.44 Aligned_cols=191 Identities=38% Similarity=0.630 Sum_probs=141.1
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~ 184 (313)
.+..++||+||||||||||++.|+++++ ++.|.+.+ .+..|+++.+...+. .+ .. ....+.+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~---~~~g~~~v----------~i~~D~~~~~~~~~~--~~-g~-~~~~~~~~ 93 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ---QDGELPAI----------QVPMDGFHLDNAVLD--AH-GL-RPRKGAPE 93 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh---hccCCceE----------EEecccccCCHHHHH--hc-cc-ccccCCCC
Confidence 5678999999999999999999999998 77776432 055665543321100 00 00 01123455
Q ss_pred CccHHHHHHHHHHhhcCC-CccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChHH
Q 021380 185 TFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDT 263 (313)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~-~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~ 263 (313)
.++...+.+++..+.... ....+.++......+.-...+....++++.|+.++++++..+..+...++.++++.-+.+.
T Consensus 94 ~~d~~~~~~~l~~l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~ 173 (229)
T PRK09270 94 TFDVAGLAALLRRLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEV 173 (229)
T ss_pred CCCHHHHHHHHHHHHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHH
Confidence 566777777777777554 5666777777766554322333357899999999999988888888999999999999999
Q ss_pred HHHHHHhhhhccCChhHHHHHHHHhcCCchHHHHHhhcCCCCEEeccCC
Q 021380 264 AMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSID 312 (313)
Q Consensus 264 ~~~rvigr~v~~G~~~e~~~~~~~~~~~~~~~~i~~~~~~aD~i~~~~~ 312 (313)
..+|+..|....|...+.+...+.....++.+|+.+.+..||+||++..
T Consensus 174 ~~~R~~~R~~~~g~s~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~n~~ 222 (229)
T PRK09270 174 LRERLVARKLAGGLSPEAAEAFVLRNDGPNARLVLETSRPADLVLEMTA 222 (229)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhcChHHHHHHHhcCCCCCEEEEecC
Confidence 8888888877788887777777877788888999999999999998863
No 392
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.74 E-value=7.9e-18 Score=174.67 Aligned_cols=93 Identities=20% Similarity=0.193 Sum_probs=72.4
Q ss_pred HHHHHHHhhcC---CCccCCCCCccCCCcchhhhhcccCc---cEEEEcCcccccCh----hhHHHHHHhhc---CeEEE
Q 021380 191 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFI 257 (313)
Q Consensus 191 ~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~a---~~li~d~~~llLDE----~~~~~l~~l~~---~~i~v 257 (313)
..+.|+.++.. .++++.+|||||+||+.||++++.++ .++++|+|+..||. .+++.|.++.+ .+|+|
T Consensus 810 ~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIii 889 (943)
T PRK00349 810 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVI 889 (943)
T ss_pred HHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 34566777743 46778899999999999999999988 99999999999999 34445555443 25799
Q ss_pred EcChHHHHH--HHH----------hhhhccCChhHHHH
Q 021380 258 EVDLDTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 258 tHd~~~~~~--rvi----------gr~v~~G~~~e~~~ 283 (313)
|||++++.. +++ |++++.|+++++..
T Consensus 890 tH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 890 EHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred ecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence 999998765 443 57888899888754
No 393
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.74 E-value=5.9e-17 Score=140.84 Aligned_cols=178 Identities=24% Similarity=0.354 Sum_probs=128.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 188 (313)
++||+||||||||||+++|.+++. ...+.++++|.++.. ++..+........++.+..++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~----------------~~~~~v~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 61 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG----------------NPKVVIISQDSYYKD---LSHEELEERKNNNYDHPDAFDF 61 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC----------------CCCeEEEEecccccc---cccccHHHhccCCCCCCCcccH
Confidence 589999999999999999999883 112567888876533 2333322222223445556666
Q ss_pred HHHHHHHHHhhcCCC--ccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChHHHHH
Q 021380 189 LLLLNCLKNLRNQGS--VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQ 266 (313)
Q Consensus 189 ~~~~~~l~~l~~~~~--~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~~~~ 266 (313)
+.+.+.|..+..... .+...+|.|++++..+ ...++.+++.|+++++.++ .+.+.++..|+|..+.+....
T Consensus 62 ~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~----~~~~~~d~~i~v~~~~~~~~~ 134 (198)
T cd02023 62 DLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK----ELRDLMDLKIFVDTDADVRLI 134 (198)
T ss_pred HHHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccch----hHHhhcCeEEEEECChhHHHH
Confidence 777778887775443 3444778888776554 4567889999999998874 455667888999999998777
Q ss_pred HHHhhhh-ccCChhHHHHHHHHhcCCchHH-HHHhhcCCCCEEeccCC
Q 021380 267 RVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 312 (313)
Q Consensus 267 rvigr~v-~~G~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~~ 312 (313)
|.+.|.. .+|...+.....|.....+++. |+.+.+..||+|+++.+
T Consensus 135 R~~~Rd~~~rg~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~ii~~~~ 182 (198)
T cd02023 135 RRIERDIVERGRDLESVINQYLKFVKPMHEQFIEPTKRYADVIIPRGG 182 (198)
T ss_pred HHHHHHhhhcCCCHHHHHHHHHHhhhhhHHHhCccchhceeEEECCCC
Confidence 7776765 5676666556777777777776 89999999999998753
No 394
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.74 E-value=3.4e-18 Score=149.53 Aligned_cols=143 Identities=13% Similarity=0.015 Sum_probs=96.4
Q ss_pred eeecCCeEEEEECCCCCCHHHHHHHHH----HHhcccCCCCceeeeC-----CCCCCCeEEEEeccCC-CCC--cccCCc
Q 021380 102 SNVNVKHIVGLAGPPGAGKSTLAAEVV----RRINKIWPQKASSFDS-----QVKPPDVATVLPMDGF-HLY--LSQLDA 169 (313)
Q Consensus 102 ~~i~~Geiv~IiGpNGsGKSTLlk~L~----Gll~~~~p~~G~i~~~-----~~~~~~~i~~v~q~~~-~~~--~~~ltv 169 (313)
+++.+| +++|+||||||||||+++|. |... |++|.+..+ .......+++++|+.. ..+ ...+++
T Consensus 18 l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~---~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~ 93 (204)
T cd03240 18 IEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP---PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAI 93 (204)
T ss_pred EecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC---cccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhH
Confidence 455566 99999999999999999996 6555 777755311 1123346888888752 111 112355
Q ss_pred ccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCc------chhhhhcccCccEEEEcCcccccChhh
Q 021380 170 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDP------VEDDILVGLQHKVVIVDGNYLFLDGGV 243 (313)
Q Consensus 170 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqR------v~la~al~~~a~~li~d~~~llLDE~~ 243 (313)
++++.+. + ...+.+.+ +..+..||+||+|| ++++++++.+++++++|+|+..||+..
T Consensus 94 ~~~~~~~------~----~~~~~~~~-------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~ 156 (204)
T cd03240 94 LENVIFC------H----QGESNWPL-------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEEN 156 (204)
T ss_pred hhceeee------c----hHHHHHHH-------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHH
Confidence 5555331 1 12222222 56778999999996 678889999999999999999999844
Q ss_pred H-----HHHHHhhc----CeEEEEcChHHHH
Q 021380 244 W-----KDVSSMFD----EKWFIEVDLDTAM 265 (313)
Q Consensus 244 ~-----~~l~~l~~----~~i~vtHd~~~~~ 265 (313)
. +.+.++.+ .+|++||+++.+.
T Consensus 157 ~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~ 187 (204)
T cd03240 157 IEESLAEIIEERKSQKNFQLIVITHDEELVD 187 (204)
T ss_pred HHHHHHHHHHHHHhccCCEEEEEEecHHHHh
Confidence 3 44444433 2479999988764
No 395
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=6.3e-18 Score=160.50 Aligned_cols=179 Identities=12% Similarity=0.038 Sum_probs=136.9
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEE
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 153 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~ 153 (313)
.-|.|++.+|++.|..... ..+.+++++++--..++++|+||+||||++|++.|.+. |.+|.+.+.+ +.+++
T Consensus 359 ~~p~l~i~~V~f~y~p~~y--~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~---~~rgi~~~~~---r~ri~ 430 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPSEY--QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT---PTRGIVGRHP---RLRIK 430 (582)
T ss_pred CCCeeEEEeeeccCCCcch--hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC---cccceeeecc---cceec
Confidence 4578999999999965431 38899999999999999999999999999999999998 9999987764 34589
Q ss_pred EEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCC---CccCCCCCccCCCcchhhhhcccCccEE
Q 021380 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 154 ~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~~~~~LSgGekqRv~la~al~~~a~~l 230 (313)
|.+|....+.. +.+.. +.+.... .|.. ..+.++..|..||... ...+..||||||-||++|.....+|.+|
T Consensus 431 ~f~Qhhvd~l~--~~v~~-vd~~~~~--~pG~-~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlL 504 (582)
T KOG0062|consen 431 YFAQHHVDFLD--KNVNA-VDFMEKS--FPGK-TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLL 504 (582)
T ss_pred chhHhhhhHHH--HHhHH-HHHHHHh--CCCC-CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEE
Confidence 99987433221 22211 1222222 2222 4567888999999443 3457799999999999999999999999
Q ss_pred EEcCcccccChhhHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 231 IVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 231 i~d~~~llLDE~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
++|+|+.-||-+.++.|.+.+. .+|+||||.+++..
T Consensus 505 VLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~ 544 (582)
T KOG0062|consen 505 VLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISS 544 (582)
T ss_pred EecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhh
Confidence 9999999999866665555443 46899999999876
No 396
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.73 E-value=1.5e-17 Score=141.72 Aligned_cols=185 Identities=13% Similarity=-0.027 Sum_probs=127.7
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCC----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD---- 150 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~---- 150 (313)
...|++.++.+.|.... +++-|+|++++.|....++|.||||||||||+|+|-.- ...|.|.+.|.+.-.
T Consensus 11 ~~aievsgl~f~y~~~d---P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm---v~~~~v~VlgrsaFhDt~l 84 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSD---PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM---VGGGVVQVLGRSAFHDTSL 84 (291)
T ss_pred cceEEEeccEEecccCC---ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc---ccCCeEEEcCcCccccccc
Confidence 34699999999997543 48999999999999999999999999999999999765 555888888865322
Q ss_pred ----eEEEEeccCCCC--CcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcc
Q 021380 151 ----VATVLPMDGFHL--YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 151 ----~i~~v~q~~~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~ 224 (313)
...|+-..-... ........-.+.....+++... .+.++-..++..+.....-..+.+|-|||+||.|+.-++
T Consensus 85 ~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g-~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL 163 (291)
T KOG2355|consen 85 ESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGG-DDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLL 163 (291)
T ss_pred cccCceeEecccccccccccccccccccccHHHHHhhccC-CChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcc
Confidence 122222210000 0000011111111112233222 122444566666666677788899999999999999999
Q ss_pred cCccEEEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH
Q 021380 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ 266 (313)
Q Consensus 225 ~~a~~li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~ 266 (313)
.+-++|++|+-++=||- .+++.+++.++. +++.||-.+=...
T Consensus 164 ~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~ 213 (291)
T KOG2355|consen 164 KPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLET 213 (291)
T ss_pred cceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhh
Confidence 99999999999998887 555666655543 5799999887776
No 397
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.73 E-value=5.9e-17 Score=141.98 Aligned_cols=183 Identities=25% Similarity=0.366 Sum_probs=128.0
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~ 184 (313)
++|+++||+||||||||||++.|+++++ + ..++++++|.++.....+...+. ....++.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~---~-------------~~~~~i~~D~~~~~~~~~~~~~~---~~~~~~~~~ 64 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG---K-------------LEIVIISQDNYYKDQSHLEMAER---KKTNFDHPD 64 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc---c-------------cCCeEecccccccChhhCCHHHh---cCCCCCCcc
Confidence 6899999999999999999999999986 3 12577888876543221111111 111223344
Q ss_pred CccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChHHH
Q 021380 185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTA 264 (313)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~~ 264 (313)
.++...+.+.+..+..+....++.++.....+.. ......+..+++.|+.++++++ .+.+.++..|+++.+.+..
T Consensus 65 ~~~~~~l~~~l~~l~~g~~v~~p~yd~~~~~~~~-~~~~~~~~~~vIieG~~~~~~~----~~~~~~d~~I~v~~~~~~~ 139 (207)
T TIGR00235 65 AFDNDLLYEHLKNLKNGSPIDVPVYDYVNHTRPK-ETVHIEPKDVVILEGIMPLFDE----RLRDLMDLKIFVDTPLDIR 139 (207)
T ss_pred HhHHHHHHHHHHHHHCCCCEecccceeecCCCCC-ceEEeCCCCEEEEEehhhhchH----hHHHhCCEEEEEECChhHH
Confidence 5556667777777776666666666554333321 1122345788999998888763 4667788889999999998
Q ss_pred HHHHHhhhhc-cCChhHHHHHHHHhcCCchHH-HHHhhcCCCCEEeccC
Q 021380 265 MQRVLKRHIS-TGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 311 (313)
Q Consensus 265 ~~rvigr~v~-~G~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~ 311 (313)
..|++.|... .|...+...+.|....+++.. |+.+.+..||+|+++.
T Consensus 140 l~R~~~R~~~~rg~~~~~~~~~~~~~~~~~~~~~i~~~~~~Ad~vi~~~ 188 (207)
T TIGR00235 140 LIRRIERDINERGRSLDSVIDQYRKTVRPMYEQFVEPTKQYADLIIPEG 188 (207)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHhhhhhHHHhCcccccccEEEEcCC
Confidence 8888877654 677667666677777888876 8999999999999853
No 398
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.72 E-value=5.1e-18 Score=147.22 Aligned_cols=185 Identities=31% Similarity=0.480 Sum_probs=128.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHH--HHhcCCCCCc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA--HARRGAPWTF 186 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~--~~~~~~~~~~ 186 (313)
+|||.||+|||||||.+.|...+. . .|.- ....+.++..|.++... ...+.-... ...++.|...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~---~-~~~~------~~~~~~~~~~d~~~~~~---~~~~~~~~~~~~~~~~~p~a~ 67 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN---K-RGIP------AMEMDIILSLDDFYDDY---HLRDRKGRGENRYNFDHPDAF 67 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT---T-CTTT------CCCSEEEEEGGGGBHHH---HHHHHHHHCTTTSSTTSGGGB
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC---c-cCcC------ccceeEEEeeccccccc---chhhHhhccccccCCCCcccc
Confidence 699999999999999999999996 2 1100 00125667777654221 111100000 0123345667
Q ss_pred cHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChHHHHH
Q 021380 187 NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQ 266 (313)
Q Consensus 187 ~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~~~~ 266 (313)
+.+.+.+.|..+..+.....+.|+.....+.. ...+..+..+++.||.++++|+. +.++++..||+..+.++.+.
T Consensus 68 d~~~l~~~l~~L~~g~~i~~p~yd~~~~~~~~-~~~~~~~~~ivIvEG~~~l~~~~----l~~l~D~~ifld~~~~~~l~ 142 (194)
T PF00485_consen 68 DFDLLKEDLKALKNGGSIEIPIYDFSTGDRDP-WIIIISPSDIVIVEGIYALYDEE----LRDLFDLKIFLDADEDLRLE 142 (194)
T ss_dssp SHHHHHHHHHHHHTTSCEEEEEEETTTTEEEE-EEEEEES-SEEEEEETTTTSSHC----HGGG-SEEEEEEE-HHHHHH
T ss_pred CHHHHHHHHHHHhCCCccccccccccccccee-eeeecCCCCEEEEcccceeeeee----ecccceeEEEecccHHHHHH
Confidence 78888888888887777777877777776665 23345678999999999999964 78889999999999999988
Q ss_pred HHHhhhhc-cCChhHHHHHHHHhcCCchHH-HHHhhcCCCCEEeccCC
Q 021380 267 RVLKRHIS-TGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 312 (313)
Q Consensus 267 rvigr~v~-~G~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~~ 312 (313)
|.+.|++. +|...+-+.++|. .++++++ ||.|++..||+||++.+
T Consensus 143 Rri~RD~~~rG~~~~~~~~~~~-~~~~~~~~~I~p~~~~ADivi~~~~ 189 (194)
T PF00485_consen 143 RRIQRDVAERGRSPEEVIAQYE-RVRPGYERYIEPQKERADIVIPSGP 189 (194)
T ss_dssp HHHHHHHHHS-S-HHHHHHHHH-THHHHHHHCTGGGGGG-SEEEESCT
T ss_pred HHhhhhccccCCcceeEEEEee-cCChhhhhheeccccccEEEECCCC
Confidence 88888775 7887776666677 6666666 99999999999999865
No 399
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.72 E-value=4.1e-17 Score=154.79 Aligned_cols=201 Identities=16% Similarity=0.130 Sum_probs=153.1
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-C---
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-P--- 149 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-~--- 149 (313)
+.++|++++|+..-... ...+++|||+|..|||+||.|-.|-|-+.|+..|+|+.+ +.+|+|.++|.+. .
T Consensus 254 g~~vL~V~~L~v~~~~~---~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~---~~~G~I~l~G~~v~~~~~ 327 (501)
T COG3845 254 GEVVLEVEDLSVKDRRG---VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK---PASGRILLNGKDVLGRLS 327 (501)
T ss_pred CCeEEEEeeeEeecCCC---CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc---cCCceEEECCEeccccCC
Confidence 45699999999876542 128999999999999999999999999999999999998 8889999999764 1
Q ss_pred ------CeEEEEeccCCC-CCcccCCcccCHHHHHHhcC-------CCCCccHHHHHHHHHHhh---cCCCccCCCCCcc
Q 021380 150 ------DVATVLPMDGFH-LYLSQLDAMEDPKEAHARRG-------APWTFNPLLLLNCLKNLR---NQGSVYAPSFDHG 212 (313)
Q Consensus 150 ------~~i~~v~q~~~~-~~~~~ltv~e~l~~~~~~~~-------~~~~~~~~~~~~~l~~l~---~~~~~~~~~LSgG 212 (313)
.-++|+|.|..- -.-..+++.+|+.+...... .........+.++++.+. .....+...||||
T Consensus 328 ~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGG 407 (501)
T COG3845 328 PRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGG 407 (501)
T ss_pred HHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCc
Confidence 248999998632 12235899999877544321 011122334566677776 2345567799999
Q ss_pred CCCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhcC---eEEEEcChHHHHH---HHH----hhhhccCCh
Q 021380 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKP 278 (313)
Q Consensus 213 ekqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~~---~i~vtHd~~~~~~---rvi----gr~v~~G~~ 278 (313)
.+||+-+|+-+...+++|+...|+-.||-. +.+.|.+..+. ++++|-|+++++. |+. ||++...++
T Consensus 408 NqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~ 487 (501)
T COG3845 408 NQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPP 487 (501)
T ss_pred ceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccccc
Confidence 999999999999999999999999999984 44444455444 4699999999988 544 887766655
Q ss_pred hH
Q 021380 279 PD 280 (313)
Q Consensus 279 ~e 280 (313)
.+
T Consensus 488 ~~ 489 (501)
T COG3845 488 EE 489 (501)
T ss_pred cc
Confidence 54
No 400
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.71 E-value=5.1e-17 Score=141.45 Aligned_cols=148 Identities=11% Similarity=0.048 Sum_probs=99.9
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC-----ce----eeeCCCCCCCeEEEEeccCCCCCccc
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-----AS----SFDSQVKPPDVATVLPMDGFHLYLSQ 166 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~-----G~----i~~~~~~~~~~i~~v~q~~~~~~~~~ 166 (313)
.++++++++.+| +.+|+||||||||||+..|...+. ... |. +.-.|. ....+.+.+++.- .+
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~---~~~~~~~r~~~~~~~i~~~~-~~~~i~~~~~~~~-~~--- 81 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG---GKASDTNRGSSLKDLIKDGE-SSAKITVTLKNQG-LD--- 81 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc---CCcccccccccHHHHhhCCC-CeEEEEEEEEcCC-cc---
Confidence 456677788877 779999999999999999986654 221 21 111111 1233555555522 11
Q ss_pred CCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhc----ccCccEEEEcCcccccCh-
Q 021380 167 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDG- 241 (313)
Q Consensus 167 ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al----~~~a~~li~d~~~llLDE- 241 (313)
+| .........+.++++. ....+.++..||+|||||++|++++ +.+++++++|+|+..+|.
T Consensus 82 ----~~---------~~~~~~~~~~~~~l~~-~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~ 147 (198)
T cd03276 82 ----AN---------PLCVLSQDMARSFLTS-NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMV 147 (198)
T ss_pred ----CC---------cCCHHHHHHHHHHhcc-ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHH
Confidence 11 0111123456666666 4455678889999999999999998 589999999999999999
Q ss_pred ---hhHHHHHHhhc------CeEEEEcChHHHHH
Q 021380 242 ---GVWKDVSSMFD------EKWFIEVDLDTAMQ 266 (313)
Q Consensus 242 ---~~~~~l~~l~~------~~i~vtHd~~~~~~ 266 (313)
.+.+.|.++.. .++++||+++.+..
T Consensus 148 ~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~ 181 (198)
T cd03276 148 NRKISTDLLVKEAKKQPGRQFIFITPQDISGLAS 181 (198)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEECCccccccc
Confidence 35555655532 13588899998876
No 401
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=99.70 E-value=1.2e-16 Score=138.04 Aligned_cols=201 Identities=43% Similarity=0.683 Sum_probs=171.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~ 184 (313)
+..+.+|+.|+.|+||||++..+..-. |..-. .+ +...-...-++|+|+|++....+..+++.......+|.|+
T Consensus 117 n~~~l~glag~pGtgkst~~a~v~~aW----p~~~~-~f-~~e~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGapw 190 (323)
T KOG2702|consen 117 NNEELTGLAGRPGTGKSTRIAAVDNAW----PVNVN-KF-AQESINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAPW 190 (323)
T ss_pred cchheeeeecCCCCcchhHHHHHHhhc----chhhh-hh-hhhhcceeEEecccchhhhHHHHHhhcChHHHHhhcCCCc
Confidence 456799999999999999999988754 32200 01 1111112234899999998888888999888888999999
Q ss_pred CccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChH
Q 021380 185 TFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLD 262 (313)
Q Consensus 185 ~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~ 262 (313)
+++...+..+++.+. ...+.++|.+..|-...+.--..+....+++|+++++++||++.|+.+-++++...++.-|.+
T Consensus 191 TFD~~lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~~ 270 (323)
T KOG2702|consen 191 TFDSNLFLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDYE 270 (323)
T ss_pred ccCHHHHHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhheeccccHH
Confidence 999999999999888 567889999999999999887788888999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhccC--ChhHHHHHHHHhcCCchHHHHHhhcCCCCEEeccC
Q 021380 263 TAMQRVLKRHISTG--KPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSI 311 (313)
Q Consensus 263 ~~~~rvigr~v~~G--~~~e~~~~~~~~~~~~~~~~i~~~~~~aD~i~~~~ 311 (313)
.+++||..|.+..| .+.+...+++.++++++-++|..+.-.+|+|++..
T Consensus 271 ~a~~RVa~RHl~sGl~~t~~ea~er~d~ND~~N~~~I~k~~i~~D~iv~~~ 321 (323)
T KOG2702|consen 271 AAEERVAKRHLQSGLVTTIAEARERFDSNDLLNGRDIDKHLIKVDNIVHIR 321 (323)
T ss_pred HHHHHHHHHhhcccccCCHHHHHhhcccccccchHHHHhcccchHHHHHhh
Confidence 99999999999999 88899999999999999999999999999998754
No 402
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.69 E-value=3.2e-17 Score=147.55 Aligned_cols=169 Identities=12% Similarity=0.047 Sum_probs=103.2
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC-------C--
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------P-- 148 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~-------~-- 148 (313)
|+++|. +.|.+.. .+ ...++ +++|+||||||||||+++|.+++. +..|++...+.. .
T Consensus 4 i~l~nf-~~~~~~~----~~-----~~~~~-~~~i~G~NGsGKStll~ai~~~l~---~~~~~~r~~~~~~~i~~~~~~~ 69 (247)
T cd03275 4 LELENF-KSYKGRH----VI-----GPFDR-FTCIIGPNGSGKSNLMDAISFVLG---EKSSHLRSKNLKDLIYRARVGK 69 (247)
T ss_pred EEEECc-cccCCCe----ee-----cCCCC-eEEEECCCCCCHHHHHHHHHHHhC---CCcccccccchhhhcccCcccc
Confidence 677776 6675432 22 23344 999999999999999999999997 777766443210 0
Q ss_pred ----CCeEEEEecc--CCCCCcccCCcccCHHHHHHhcCC-CCCccHHHHHHHHHHhhcCC-------------------
Q 021380 149 ----PDVATVLPMD--GFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQG------------------- 202 (313)
Q Consensus 149 ----~~~i~~v~q~--~~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~------------------- 202 (313)
...+.+.++. +.+... ..++.+... .+.. ........+.++++.++...
T Consensus 70 ~~~~~~~v~~~f~~~~~~~~~~-~~~~~~~~~----~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~ 144 (247)
T cd03275 70 PDSNSAYVTAVYEDDDGEEKTF-RRIITGGSS----SYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKN 144 (247)
T ss_pred CCCceEEEEEEEEcCCCcEEEE-EEEEECCce----EEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhcc
Confidence 1123333332 111000 011111100 0000 11223445566777766421
Q ss_pred -----CccCCCCCccCCCcchhhhhccc----CccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHH
Q 021380 203 -----SVYAPSFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAM 265 (313)
Q Consensus 203 -----~~~~~~LSgGekqRv~la~al~~----~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~ 265 (313)
+.++.+||+||+||++|+++++. +++++++|+|+..||.. +.+.|.++.+ .+|+||||.+...
T Consensus 145 p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~ 223 (247)
T cd03275 145 PPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFS 223 (247)
T ss_pred CcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHh
Confidence 12346999999999999999975 48999999999999983 4555555544 2579999977654
No 403
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.69 E-value=6.4e-16 Score=135.49 Aligned_cols=181 Identities=25% Similarity=0.382 Sum_probs=126.8
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~ 184 (313)
.++.+|+|.|+||||||||++.|++.+. ...+.++++|.++.....++..+. ....++.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~----------------~~~~~~i~~D~~~~~~~~~~~~~~---~~~~~~~~~ 64 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG----------------DESIAVIPQDSYYKDQSHLSFEER---VKTNYDHPD 64 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC----------------CCceEEEeCCccccCcccCCHHHh---cccCccCcc
Confidence 4688999999999999999999999884 123778999977554322222111 112234455
Q ss_pred CccHHHHHHHHHHhhcCCCccCCCC--CccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChH
Q 021380 185 TFNPLLLLNCLKNLRNQGSVYAPSF--DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLD 262 (313)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~~~~~~L--SgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~ 262 (313)
.++.+.+.+.|..+..+.....+.+ +.+.+..-. ....+..+++.|+.+++.++ .+.++++..|+++-+.+
T Consensus 65 ~~~~~~l~~~l~~l~~~~~v~~p~~d~~~~~~~~~~---~~~~~~~~vivEg~~l~~~~----~~~~~~d~~I~v~~~~~ 137 (209)
T PRK05480 65 AFDHDLLIEHLKALKAGKAIEIPVYDYTEHTRSKET---IRVEPKDVIILEGILLLEDE----RLRDLMDIKIFVDTPLD 137 (209)
T ss_pred cccHHHHHHHHHHHHcCCccccCcccccccccCCCe---EEeCCCCEEEEEeehhcCch----hHhhhhceeEEEeCChh
Confidence 6677777788887775544444444 343322111 11244678999999988763 55677888999999999
Q ss_pred HHHHHHHhhhh-ccCChhHHHHHHHHhcCCchHH-HHHhhcCCCCEEeccC
Q 021380 263 TAMQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 311 (313)
Q Consensus 263 ~~~~rvigr~v-~~G~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~ 311 (313)
+...|++.|.. ..|...+.+.++|.....+.++ |+.|.+..||+||++.
T Consensus 138 ~~~~R~~~Rd~~~rg~~~e~~~~~~~~~~~~~~~~~i~~~~~~AD~vI~~~ 188 (209)
T PRK05480 138 IRLIRRLKRDVNERGRSLESVINQYLSTVRPMHLQFIEPSKRYADIIIPEG 188 (209)
T ss_pred HHHHHHHhhcchhcCCCHHHHHHHHHHhhhhhHHhhccHhhcceeEEecCC
Confidence 98888887765 4577666666777777777776 9999999999999864
No 404
>PRK05439 pantothenate kinase; Provisional
Probab=99.69 E-value=3.1e-16 Score=144.42 Aligned_cols=192 Identities=24% Similarity=0.332 Sum_probs=140.4
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~ 184 (313)
...-+|||.|+.|||||||++.|..++. ... ....+.++++|+|+.++..+. +. -....+|.|.
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~---~~~---------~~~~v~vi~~DdFy~~~~~l~--~~--~l~~~kg~Pe 147 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLS---RWP---------EHPKVELVTTDGFLYPNAVLE--ER--GLMKRKGFPE 147 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH---hhC---------CCCceEEEeccccccCHHHHh--hh--hccccCCCcc
Confidence 3456999999999999999999999885 210 112477899999876653322 10 0112467888
Q ss_pred CccHHHHHHHHHHhhcCCC-ccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChh--hHHHHHHhhcCeEEEEcCh
Q 021380 185 TFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG--VWKDVSSMFDEKWFIEVDL 261 (313)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~-~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~--~~~~l~~l~~~~i~vtHd~ 261 (313)
++|.+.+.+.|..+..+.. ..+|.||.-...++.-......+++++|+||.+++.++. .+..+.++++..|||.-|.
T Consensus 148 s~D~~~l~~~L~~Lk~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~ 227 (311)
T PRK05439 148 SYDMRALLRFLSDVKSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADE 227 (311)
T ss_pred cccHHHHHHHHHHHHcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCH
Confidence 8999999999999987664 778888877777664333445678999999998886654 4677899999999999999
Q ss_pred HHHHHHHHhhhhc----------------cCChhH----HHHHHHHhcCCchHH-HHHhhcCCCCEEeccCC
Q 021380 262 DTAMQRVLKRHIS----------------TGKPPD----VAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 312 (313)
Q Consensus 262 ~~~~~rvigr~v~----------------~G~~~e----~~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~~ 312 (313)
+.+.+|.+.|.+. .|-+.+ .+...|...+.||.+ ||.|++.+||+|++...
T Consensus 228 ~~~~~w~i~R~~~lr~~~~rdp~s~~~~~~~~s~~~a~~~a~~~w~~~~~pn~~~~I~Ptk~~ADlIi~~~~ 299 (311)
T PRK05439 228 DLIEKWYIERFLKLRETAFSDPDSYFHRYAKLSEEEAIAIARQIWDEINLPNLEENILPTRERADLILHKGA 299 (311)
T ss_pred HHHHHHHHHHHHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHhcchhhHHHhccCCCcCCCEEEeCCC
Confidence 9887755533321 232222 445567889999995 99999999999998643
No 405
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.69 E-value=5.5e-17 Score=175.47 Aligned_cols=91 Identities=13% Similarity=0.053 Sum_probs=69.9
Q ss_pred HHHHHhhcC---CCccCCCCCccCCCcchhhhhcc---cCccEEEEcCcccccChh----hHHHHHHhhcC---eEEEEc
Q 021380 193 NCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVG---LQHKVVIVDGNYLFLDGG----VWKDVSSMFDE---KWFIEV 259 (313)
Q Consensus 193 ~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~---~~a~~li~d~~~llLDE~----~~~~l~~l~~~---~i~vtH 259 (313)
++|+.++.. .++++.+|||||+||++||++++ .+++++++|+|+..||.. +++.|.++.+. +|+|||
T Consensus 791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsH 870 (1809)
T PRK00635 791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEH 870 (1809)
T ss_pred HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 567777743 46778899999999999999997 589999999999999983 44444444332 579999
Q ss_pred ChHHHHH--HHH----------hhhhccCChhHHHH
Q 021380 260 DLDTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 260 d~~~~~~--rvi----------gr~v~~G~~~e~~~ 283 (313)
|++++.. +++ |++++.|+++++..
T Consensus 871 dl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 871 NMHVVKVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred CHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 9998833 333 47788899888754
No 406
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.67 E-value=1.3e-16 Score=165.47 Aligned_cols=91 Identities=16% Similarity=0.160 Sum_probs=68.2
Q ss_pred HHHHHHHhhcC---CCccCCCCCccCCCcchhhhhccc---CccEEEEcCcccccCh----hhHHHHHHhhc---CeEEE
Q 021380 191 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGL---QHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFI 257 (313)
Q Consensus 191 ~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~---~a~~li~d~~~llLDE----~~~~~l~~l~~---~~i~v 257 (313)
..++|+.++.. .++++.+|||||+||+.||++++. ++.++++|+|+..||. .+++.+.++.+ .+|++
T Consensus 808 ~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi 887 (924)
T TIGR00630 808 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVI 887 (924)
T ss_pred HHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 34566666643 466788999999999999999986 4899999999999999 34455555543 25799
Q ss_pred EcChHHHHH--HHH----------hhhhccCChhHH
Q 021380 258 EVDLDTAMQ--RVL----------KRHISTGKPPDV 281 (313)
Q Consensus 258 tHd~~~~~~--rvi----------gr~v~~G~~~e~ 281 (313)
+||++++.. +++ |++++.|+++++
T Consensus 888 ~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 888 EHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred eCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 999998755 443 467777877654
No 407
>PLN02318 phosphoribulokinase/uridine kinase
Probab=99.66 E-value=8.5e-16 Score=150.18 Aligned_cols=173 Identities=23% Similarity=0.336 Sum_probs=123.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCC
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT 185 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~ 185 (313)
.--+|||.||||||||||++.|++++ |.. +.+++|+++.... . ....+..+..
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglL----p~v--------------gvIsmDdy~~~~~---~------i~~nfD~P~a 116 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFM----PSI--------------AVISMDNYNDSSR---I------IDGNFDDPRL 116 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhC----CCc--------------EEEEEcceecchh---h------hCccCCChhh
Confidence 34699999999999999999999987 433 4455555421110 0 0012233444
Q ss_pred ccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChHHHH
Q 021380 186 FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAM 265 (313)
Q Consensus 186 ~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~~~ 265 (313)
.+...+.+.|..+..+....++.|+.-...|..-......+++++|+||.+++.+ .+.+++|..|||+.|.+..+
T Consensus 117 ~D~d~L~enL~~Lr~GksV~iPiYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~~-----~Lr~LlDlkIFVDtdvDirL 191 (656)
T PLN02318 117 TDYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALSE-----KLRPLLDLRVSVTGGVHFDL 191 (656)
T ss_pred cchhHHHHHHHHHhCCCceecCccccccCcccCCceeecCCCcEEEEechhhccH-----hHHhhCCEEEEEcCCccHHH
Confidence 4555666777777777667777777666666532222356789999999999863 68888999999997777666
Q ss_pred H-HHHhhhhccCChhHHHHHHHHhcCCchHH-HHHhhcCCCCEEecc
Q 021380 266 Q-RVLKRHISTGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKS 310 (313)
Q Consensus 266 ~-rvigr~v~~G~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~ 310 (313)
. |++.+..++|...+-+..+|...++|+++ ||.|.+..||+||++
T Consensus 192 ~RRI~RD~~eRGrs~EsVi~q~~~~VkP~y~~FIeP~kk~ADIII~n 238 (656)
T PLN02318 192 VKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVN 238 (656)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhcchHHHHhCcchhcceEEEec
Confidence 6 44455567787777666778888899988 999999999999955
No 408
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.64 E-value=4.7e-16 Score=144.57 Aligned_cols=160 Identities=14% Similarity=0.135 Sum_probs=113.1
Q ss_pred ccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhccc-----CCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCc
Q 021380 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-----WPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDA 169 (313)
Q Consensus 95 ~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~-----~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv 169 (313)
.+|+|+||+|++|++++|+|+|||||||++++|+|..... -|++|.|.+-.... .+.++-..-..+. ..|+
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~---~a~iPge~Ep~f~-~~ti 472 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV---SALIPGEYEPEFG-EVTI 472 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch---hhccCcccccccC-chhH
Confidence 4899999999999999999999999999999999986522 27888887633221 2334433111111 1222
Q ss_pred ccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCC----CccCCCCCccCCCcchhhhhcccCccEEEEcCcccccCh----
Q 021380 170 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG----SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG---- 241 (313)
Q Consensus 170 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE---- 241 (313)
.+. .+.. .-|...+.++|...|... ..+..+||-|||.|+.||.+++..|.+++.|+-...|||
T Consensus 473 leh------l~s~--tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~ 544 (593)
T COG2401 473 LEH------LRSK--TGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAV 544 (593)
T ss_pred HHH------Hhhc--cCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHH
Confidence 222 2222 224455678888888432 346679999999999999999999999999999999999
Q ss_pred hhHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 242 GVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 242 ~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
.+...+.++.. ..+.+||..+...+
T Consensus 545 rVArkiselaRe~giTlivvThrpEv~~A 573 (593)
T COG2401 545 RVARKISELAREAGITLIVVTHRPEVGNA 573 (593)
T ss_pred HHHHHHHHHHHHhCCeEEEEecCHHHHhc
Confidence 34444445543 24699999988755
No 409
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.64 E-value=2e-16 Score=150.64 Aligned_cols=166 Identities=13% Similarity=0.005 Sum_probs=113.9
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEec
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q 157 (313)
|.++|+-.--+... .++..++|.|++|--+.|+||||||||.|+|+|.|+-+ -..|...+ +++..+.|+||
T Consensus 482 I~lenIpvItP~~~---vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP---vy~g~L~~---P~~~~mFYIPQ 552 (728)
T KOG0064|consen 482 IILENIPVITPAGD---VLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP---VYNGLLSI---PRPNNIFYIPQ 552 (728)
T ss_pred eEEecCceeccCcc---eeecceeEEecCCceEEEECCCCccHHHHHHHHhccCc---ccCCeeec---CCCcceEeccC
Confidence 77788876665432 26799999999999999999999999999999999986 55565544 24456999999
Q ss_pred cCCCCCcccCCcccCHHHHH-----HhcCCCCCccHHHHHHHHHHhhc--------CCC--cc-CCCCCccCCCcchhhh
Q 021380 158 DGFHLYLSQLDAMEDPKEAH-----ARRGAPWTFNPLLLLNCLKNLRN--------QGS--VY-APSFDHGVGDPVEDDI 221 (313)
Q Consensus 158 ~~~~~~~~~ltv~e~l~~~~-----~~~~~~~~~~~~~~~~~l~~l~~--------~~~--~~-~~~LSgGekqRv~la~ 221 (313)
-++.- . =|.+|.+-++. ..+|.. .+.+..+|..+.. +.+ .. ...||||||||+++
T Consensus 553 RPYms-~--gtlRDQIIYPdS~e~~~~kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~m-- 623 (728)
T KOG0064|consen 553 RPYMS-G--GTLRDQIIYPDSSEQMKRKGYT----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGM-- 623 (728)
T ss_pred CCccC-c--CcccceeecCCcHHHHHhcCCC----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHH--
Confidence 97643 1 25666655532 122222 2334444444331 111 12 23899999999999
Q ss_pred hcccCccEEEEcCcccccCh-------hhHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 222 LVGLQHKVVIVDGNYLFLDG-------GVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 222 al~~~a~~li~d~~~llLDE-------~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
||++.+.|.+.+||| ++-..+-+..+ ..+-|||.+..-..
T Consensus 624 -----ARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~gi~llsithrpslwk~ 674 (728)
T KOG0064|consen 624 -----ARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGISLLSITHRPSLWKY 674 (728)
T ss_pred -----HHHHhcCcchhhhhhhhcccccchHHHHHHHHHhcCceEEEeecCccHHHH
Confidence 899999999999999 33333333333 23588999887765
No 410
>PLN02348 phosphoribulokinase
Probab=99.58 E-value=3.3e-14 Score=133.72 Aligned_cols=190 Identities=21% Similarity=0.269 Sum_probs=128.6
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCC-----CCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcC
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV-----KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~-----~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~ 181 (313)
.-+|||.|++|||||||++.|...+.. .+.-..+|. .....+.++++|+|+.... ..+.... ....
T Consensus 49 p~IIGIaG~SGSGKSTfA~~L~~~Lg~----~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr--~~r~~~g---~t~l 119 (395)
T PLN02348 49 TVVIGLAADSGCGKSTFMRRLTSVFGG----AAKPPKGGNPDSNTLISDTTTVICLDDYHSLDR--TGRKEKG---VTAL 119 (395)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhh----ccCCCccccccccccccCceEEEEcccccCCCh--hhHhhcC---CccC
Confidence 459999999999999999999999851 111001111 1123467899998865431 1111000 0011
Q ss_pred CCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcCh
Q 021380 182 APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDL 261 (313)
Q Consensus 182 ~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~ 261 (313)
.|...+.+.+.+.+..+..+.....|.|+.-...+.. ...+.+++++|.|+.+.+.|+ .+.++++..|||+.+.
T Consensus 120 dP~a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~--~e~I~p~~VVIVEGlh~L~~e----~lr~l~D~~IyVd~~~ 193 (395)
T PLN02348 120 DPRANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDP--PELIEPPKILVIEGLHPMYDE----RVRDLLDFSIYLDISD 193 (395)
T ss_pred CcccccHHHHHHHHHHHHCCCcEEeeccccCCCCcCC--cEEcCCCcEEEEechhhccCc----cccccCcEEEEEECCH
Confidence 2344556667788888877666666655544433322 113456899999999999995 6677888899999999
Q ss_pred HHHHHHHHhhhhc-cCChhHHHHHHHHhcCCchHHHHHhhcCCCCEEeccC
Q 021380 262 DTAMQRVLKRHIS-TGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSI 311 (313)
Q Consensus 262 ~~~~~rvigr~v~-~G~~~e~~~~~~~~~~~~~~~~i~~~~~~aD~i~~~~ 311 (313)
+....|.+.|+++ +|...+.+.+++.........||.|.+..||+||+-.
T Consensus 194 dvrl~RRI~RD~~eRG~S~EeV~~~i~ar~pd~~~yI~pqk~~ADiVI~v~ 244 (395)
T PLN02348 194 DVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADVVIEVL 244 (395)
T ss_pred HHHHHHHHHhhHhhcCCCHHHHHHHHHhcCcchhhhcccccccCCEEEEec
Confidence 9988888888875 7877777777777654444559999999999999765
No 411
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.57 E-value=1.6e-14 Score=150.38 Aligned_cols=187 Identities=14% Similarity=0.127 Sum_probs=138.5
Q ss_pred ccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----CCeEEEEeccCCCCCcccCCc
Q 021380 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PDVATVLPMDGFHLYLSQLDA 169 (313)
Q Consensus 95 ~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-----~~~i~~v~q~~~~~~~~~ltv 169 (313)
.+|+|+|+-+++|+.+.++||.|||||||++.|+|.+....-..|+|.++|.+. ++.++|++|++.+.+ +|||
T Consensus 129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p--~lTV 206 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFP--ELTV 206 (1391)
T ss_pred eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccc--eeEE
Confidence 489999999999999999999999999999999999863334467899999763 356899999987766 5999
Q ss_pred ccCHHHHHHhcCCCCCc----cHH----HHHHHHHHhhcC-------CCccCCCCCccCCCcchhhhhcccCccEEEEcC
Q 021380 170 MEDPKEAHARRGAPWTF----NPL----LLLNCLKNLRNQ-------GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (313)
Q Consensus 170 ~e~l~~~~~~~~~~~~~----~~~----~~~~~l~~l~~~-------~~~~~~~LSgGekqRv~la~al~~~a~~li~d~ 234 (313)
+|-+.|..+..+..... ..+ ....+++.+|+. .+..+.-.|||||+||.++.+++.+++++..|+
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 99999988766542111 122 234677777742 344566899999999999999999999999999
Q ss_pred cccccCh----hhHHHHHHhhc---CeEEEE--cChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 235 NYLFLDG----GVWKDVSSMFD---EKWFIE--VDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 235 ~~llLDE----~~~~~l~~l~~---~~i~vt--Hd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
..-.||- ++.+.++.+.+ ...+|+ .-.+++.. .++ |+.+..|+.++++.
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 9999998 44444444433 333333 22333332 333 99999998777654
No 412
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.55 E-value=1.8e-13 Score=122.72 Aligned_cols=184 Identities=16% Similarity=0.113 Sum_probs=129.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHH---HhcCC--C
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH---ARRGA--P 183 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~---~~~~~--~ 183 (313)
++||.|++||||||+.+.|...+. . . ...+.++.+|.|+.+. ..+-.+...... ..+.. |
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~---~-~----------g~~v~vI~~D~yyr~~-r~~~~~~~~~a~~~~~nfdHf~P 65 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA---R-E----------GIHPAVVEGDSFHRYE-RMEMKMAIAEALDAGRNFSHFGP 65 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH---h-c----------CCceEEEeccccccCC-chhHHHHHHHHhhcCCCCCCCCc
Confidence 589999999999999999998885 1 1 1236789999876532 222222211111 23445 6
Q ss_pred CCccHHHHHHHHHHhhcCCCccCCCCCc------------cCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhh
Q 021380 184 WTFNPLLLLNCLKNLRNQGSVYAPSFDH------------GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (313)
Q Consensus 184 ~~~~~~~~~~~l~~l~~~~~~~~~~LSg------------GekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~ 251 (313)
.+.+.+.+.+.+..++.+.....+.|.. |....-. .+..++.+++.||-+.++. --...+++++
T Consensus 66 eAnd~dlL~~~l~~L~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~---~~~~p~dvIivEGLhg~~~-~~~~~lr~~~ 141 (277)
T cd02029 66 EANLFDLLEELFRTYGETGRGRSRYYLHSDEEAAPFNQEPGTFTPWE---DLPEDTDLLFYEGLHGGVV-TEGYNVAQHA 141 (277)
T ss_pred ccccHHHHHHHHHHHHcCCCcccceeeccccccccccCCCCccCCcc---cccCCCcEEEECCCCcccc-cccHHHHHhC
Confidence 7778888899999998776666665533 4333111 1235699999999873322 0015788889
Q ss_pred cCeEEEEcChHHHHHHHHhhhh-ccCChhHHHHHHHHhcCCchHH-HHHhhcCCCCEEeccCC
Q 021380 252 DEKWFIEVDLDTAMQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 312 (313)
Q Consensus 252 ~~~i~vtHd~~~~~~rvigr~v-~~G~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~~ 312 (313)
|-.|+|.-|.++...|.+.|++ ++|...|-+...|.+.. |++. ||.|++..||++++..+
T Consensus 142 DlkIfVd~~~dlr~irRI~RD~~ERGrs~EsVi~qilrrm-pdy~~yI~PQ~~~tDI~fqr~p 203 (277)
T cd02029 142 DLLVGVVPIINLEWIQKIHRDTAERGYSAEAVMDTILRRM-PDYINYICPQFSRTDINFQRVP 203 (277)
T ss_pred CeEEEecCcHHHHHHHHHHhhhHhhCCCHHHHHHHHHHhC-chHHhhCCcccccCcEEEeccC
Confidence 9999999999988877777777 48998887777777777 7766 99999999999998654
No 413
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.55 E-value=2.1e-15 Score=141.75 Aligned_cols=177 Identities=18% Similarity=0.126 Sum_probs=106.4
Q ss_pred cceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeee----CCCCCCCeEEEEec
Q 021380 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD----SQVKPPDVATVLPM 157 (313)
Q Consensus 82 ~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~----~~~~~~~~i~~v~q 157 (313)
++..+||...- .|..+- ...+|.++||+|+||-||||.+|+|+|.+. |.-|+..- +... ...-|---|
T Consensus 79 e~vHRYg~NgF---kL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~---PNLG~~~~pp~wdeVi-~~FrGtELq 150 (591)
T COG1245 79 EVVHRYGVNGF---KLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELK---PNLGRYEDPPSWDEVI-KRFRGTELQ 150 (591)
T ss_pred cceeeccCCce---EEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccc---cCCCCCCCCCCHHHHH-HHhhhhHHH
Confidence 45778875321 122111 246899999999999999999999999999 88776421 1000 000000001
Q ss_pred cCCC-CCcccCCcc---cCHHHH-HHhcCCC----CCc-cHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhccc
Q 021380 158 DGFH-LYLSQLDAM---EDPKEA-HARRGAP----WTF-NPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 158 ~~~~-~~~~~ltv~---e~l~~~-~~~~~~~----~~~-~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
+.|. +....+.+. +.+... ....|.- ++. ....+.++.+.++ ...++.+.+|||||-||++||.+++.
T Consensus 151 ~YF~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~r 230 (591)
T COG1245 151 NYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLR 230 (591)
T ss_pred HHHHHHHcCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhc
Confidence 1000 000000000 001110 0111100 000 1123455666666 34678899999999999999999999
Q ss_pred CccEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 226 ~a~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
+|++.++|++..-||- ..-..++++.. .+++|.||+..+..
T Consensus 231 dADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~ 278 (591)
T COG1245 231 DADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDY 278 (591)
T ss_pred cCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHH
Confidence 9999999999999997 45556666664 36799999987654
No 414
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.53 E-value=2.6e-13 Score=123.67 Aligned_cols=175 Identities=23% Similarity=0.335 Sum_probs=110.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 188 (313)
++||+|+||||||||++.|+++++ +..|. ++.+|+++... ..+ ........-.+...+.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~---~~~~~-------------vi~~Dd~~~~~----~~~-r~~~g~~~~~p~~~~~ 59 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFG---SDLVT-------------VICLDDYHSLD----RKG-RKETGITALDPRANNF 59 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhC---CCceE-------------EEECcccccCC----HHH-HHHhhcccccccchhH
Confidence 589999999999999999999997 55433 34455432211 000 0000000001222223
Q ss_pred HHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChHHHHHHH
Q 021380 189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRV 268 (313)
Q Consensus 189 ~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~~~~rv 268 (313)
..+.+.++.+..+.....+.++.-...... .....+.++++.|+.+++.++ .+.++++..|+++.+.+....|.
T Consensus 60 d~l~~~l~~Lk~g~~i~~P~y~~~~~~~~~--~~~i~~~~ivIvEG~~~l~~~----~l~~~~D~~I~vd~~~e~r~~r~ 133 (273)
T cd02026 60 DLMYEQLKALKEGQAIEKPIYNHVTGLIDP--PELIKPTKIVVIEGLHPLYDE----RVRELLDFSVYLDISDEVKFAWK 133 (273)
T ss_pred HHHHHHHHHHHCCCCcccccccccCCCcCC--cEEcCCCCEEEEeeehhhCch----hhhhhccEEEEEECChhHHHHHH
Confidence 344455555655444444444433322111 011234689999999988873 66778898999999999887787
Q ss_pred Hhhhhc-cCChhHHHHHHHHhcCCchHH-HHHhhcCCCCEEeccC
Q 021380 269 LKRHIS-TGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 311 (313)
Q Consensus 269 igr~v~-~G~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~ 311 (313)
+.|.+. +|...+-+.+.+... .+.++ ||.|.+..||+||+..
T Consensus 134 i~Rd~~rrG~s~e~v~~~i~~r-~~~~~~~I~P~~~~ADvVI~~~ 177 (273)
T cd02026 134 IQRDMAERGHSLEDVLASIEAR-KPDFEAYIDPQKQYADVVIQVL 177 (273)
T ss_pred HHHHHHHhCCCHHHHHHHHHhh-chhHHHHhccccccCcEEEEcc
Confidence 878776 576666666666654 45555 9999999999999754
No 415
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=99.50 E-value=2.4e-13 Score=121.21 Aligned_cols=185 Identities=29% Similarity=0.433 Sum_probs=150.3
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCC
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~ 183 (313)
-...-+|||.|+-|+||||+.+.+.-++. .||.+ ..+..+++|+|++++..+. .++ .+..+|.|
T Consensus 79 ~~~pfIIgiaGsvavGKST~ar~L~~ll~-~~~~~-----------~~v~lvpmDGFhy~n~~L~-~~g---lm~rKGfP 142 (283)
T COG1072 79 QQRPFIIGIAGSVAVGKSTTARILQALLS-RWPES-----------PKVDLVTMDGFHYPNAVLD-ERG---LMARKGFP 142 (283)
T ss_pred CCCCEEEEeccCccccHHHHHHHHHHHHh-hCCCC-----------CceEEEeccccccCHhHhh-hcc---ccccCCCC
Confidence 34567999999999999999999999996 22321 2478899999988764433 111 23567899
Q ss_pred CCccHHHHHHHHHHhh-cCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChH
Q 021380 184 WTFNPLLLLNCLKNLR-NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLD 262 (313)
Q Consensus 184 ~~~~~~~~~~~l~~l~-~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~ 262 (313)
..+|...+.+.+..+. ...+..+|.||.-....+.-+..+...++++|++|+.+++|++-+-.+.+.+|-.|||.-|.+
T Consensus 143 eSyD~~~ll~fl~~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~ 222 (283)
T COG1072 143 ESYDVAALLRFLSDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEE 222 (283)
T ss_pred ccccHHHHHHHHHHHhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHH
Confidence 9999999999999998 455688999999998888888888999999999999999999888889999999999999999
Q ss_pred HHHHHHHhhhhccCChhHHHHHHHHhcCCchHHHHHhhcCCC
Q 021380 263 TAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNA 304 (313)
Q Consensus 263 ~~~~rvigr~v~~G~~~e~~~~~~~~~~~~~~~~i~~~~~~a 304 (313)
.+.+|++.|....|.........+-.++.++.+........+
T Consensus 223 ~le~wyi~Rfl~~g~~a~~~~~~~~~~~~~~~~~~a~~~a~~ 264 (283)
T COG1072 223 LLEERYIERFLKFGLTAFEDPASYFHNYAPLSEREAIESARA 264 (283)
T ss_pred HHHHHHHHHHHhcccchhhChhhHhhccCcchHHHHHHhhhh
Confidence 999999999999888888777777777777776444433333
No 416
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.49 E-value=3.1e-13 Score=115.78 Aligned_cols=176 Identities=21% Similarity=0.269 Sum_probs=115.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 188 (313)
+++|.|++|||||||.+.|...+. . .| ..+.++.+|+|+.+. ... .. ....++.+...+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~---~-~~----------~~~~~i~~Ddf~~~~--~~~--~~--~~g~~d~~~~~d~ 60 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR---V-NG----------IGPVVISLDDYYVPR--KTP--RD--EDGNYDFESILDL 60 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH---H-cC----------CCEEEEehhhcccCc--ccc--cc--cCCCCCCCccccH
Confidence 589999999999999999999985 1 11 236778999876543 110 00 0012222333466
Q ss_pred HHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChHH-HHHH
Q 021380 189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDT-AMQR 267 (313)
Q Consensus 189 ~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~-~~~r 267 (313)
+.+.+.+..+..+.....+.++.-..++..-......+..+++.|+.+++.+ .+.++++..||++-+.++ .+.|
T Consensus 61 ~~l~~~l~~l~~~~~~~~p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~-----~l~~~~d~~I~vd~~~~~~rl~r 135 (179)
T cd02028 61 DLLNKNLHDLLNGKEVELPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALNE-----RLRSLLDIRVAVSGGVHLNRLLR 135 (179)
T ss_pred HHHHHHHHHHHCCCeeecccceeECCccCCCceEEeCCCCEEEEecHHhcCH-----hHHhhcCEEEEEeCCccHHHHHH
Confidence 6777777777765555566555444444331112345688999999999754 567778888999999997 6666
Q ss_pred HHhhhh-ccCChhHHHHHHHHhcCCchHH-HHHhhcCCCCEEecc
Q 021380 268 VLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKS 310 (313)
Q Consensus 268 vigr~v-~~G~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~ 310 (313)
.+-|++ ++|...+-+.+++. ...+.+. |+.|.+..||+|+.+
T Consensus 136 ri~RD~~~rg~~~~~~i~~~~-~~~~~~~~~~~~~~~~ad~~~~~ 179 (179)
T cd02028 136 RVVRDIQFRGYSAELTILMWP-SVPSGEEFIIPPLQEAAIVMFNS 179 (179)
T ss_pred HHHHhHHhhCCCHHHHhhhcc-cccCchhhcCCCchhccceeccC
Confidence 666666 57877666655543 4444554 567899999999863
No 417
>PRK07429 phosphoribulokinase; Provisional
Probab=99.48 E-value=1e-12 Score=122.43 Aligned_cols=174 Identities=23% Similarity=0.349 Sum_probs=116.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcC----
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG---- 181 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~---- 181 (313)
+--++||.|+||||||||++.|++++. +.. +.++.+|+++.... .. ....+
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll~---~~~-------------~~vi~~Dd~~~~~~--~~-------r~~~g~~~l 61 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLLG---EEL-------------VTVICTDDYHSYDR--KQ-------RKELGITAL 61 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHhc---cCc-------------eEEEEecccccCCH--HH-------HHhcCCccc
Confidence 345899999999999999999999997 543 34455665432110 00 01111
Q ss_pred CCCCccHHHHHHHHHHhhcCCCccCC--CCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEc
Q 021380 182 APWTFNPLLLLNCLKNLRNQGSVYAP--SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEV 259 (313)
Q Consensus 182 ~~~~~~~~~~~~~l~~l~~~~~~~~~--~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtH 259 (313)
.+...+...+.+.++.+..+.....+ ..+.|+.... ....+.++++.|+.+.+.++ .+.++++..||++-
T Consensus 62 ~p~~~~~d~l~~~l~~L~~g~~I~~P~yd~~~g~~~~~----~~i~p~~iVIvEG~~~l~~~----~lr~~~D~~I~Vda 133 (327)
T PRK07429 62 DPRANNLDIMYEHLKALKTGQPILKPIYNHETGTFDPP----EYIEPNKIVVVEGLHPLYDE----RVRELYDFKVYLDP 133 (327)
T ss_pred CccchHHHHHHHHHHHHHCCCceecceeecCCCCcCCc----EecCCCcEEEEechhhcCcH----hHHhhCCEEEEEEC
Confidence 12233445566666766655544444 3444433211 11234689999999988873 66778899999999
Q ss_pred ChHHHHHHHHhhhhc-cCChhHHHHHHHHhcCCchHHHHHhhcCCCCEEeccCC
Q 021380 260 DLDTAMQRVLKRHIS-TGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSID 312 (313)
Q Consensus 260 d~~~~~~rvigr~v~-~G~~~e~~~~~~~~~~~~~~~~i~~~~~~aD~i~~~~~ 312 (313)
+.++...|.+.|... +|...+.+..++.........||.|.+..||+||+..+
T Consensus 134 ~~evr~~Rri~Rd~~rrG~s~eei~~~i~~r~pd~~~yI~P~k~~ADiVI~~~p 187 (327)
T PRK07429 134 PEEVKIAWKIKRDMAKRGHTYEQVLAEIEAREPDFEAYIRPQRQWADVVIQFLP 187 (327)
T ss_pred CHHHHHHHHHHHHHhhcCCCHHHHHHHHHHhCccHhhhhcccccCCCEEEEcCC
Confidence 999888888877776 57766666666766544444599999999999998764
No 418
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.48 E-value=7.2e-14 Score=121.71 Aligned_cols=130 Identities=10% Similarity=0.042 Sum_probs=82.4
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHH
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~ 175 (313)
+++|++|+. |++++|+||||||||||+|+|+|...- ...|. .... -.+++|.. .++ ..+++.+++.+
T Consensus 16 v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~l--~~~G~------~v~a-~~~~~q~~-~l~-~~~~~~d~l~~ 82 (199)
T cd03283 16 VANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVIL--AQAGA------PVCA-SSFELPPV-KIF-TSIRVSDDLRD 82 (199)
T ss_pred ecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHHH--HHcCC------EEec-CccCcccc-eEE-Eeccchhcccc
Confidence 778887776 699999999999999999999997730 11221 1111 12345532 222 24788898876
Q ss_pred HHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHH-----HHHHh
Q 021380 176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK-----DVSSM 250 (313)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~-----~l~~l 250 (313)
....+ .....++.++++.++. ..++++++|+++..+|..... .+..+
T Consensus 83 ~~s~~----~~e~~~~~~iL~~~~~------------------------~~p~llllDEp~~glD~~~~~~l~~~ll~~l 134 (199)
T cd03283 83 GISYF----YAELRRLKEIVEKAKK------------------------GEPVLFLLDEIFKGTNSRERQAASAAVLKFL 134 (199)
T ss_pred ccChH----HHHHHHHHHHHHhccC------------------------CCCeEEEEecccCCCCHHHHHHHHHHHHHHH
Confidence 43211 1122445566666541 348999999999999983222 23333
Q ss_pred hc---CeEEEEcChHHHHH
Q 021380 251 FD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 251 ~~---~~i~vtHd~~~~~~ 266 (313)
.+ .+|++|||++++..
T Consensus 135 ~~~~~tiiivTH~~~~~~~ 153 (199)
T cd03283 135 KNKNTIGIISTHDLELADL 153 (199)
T ss_pred HHCCCEEEEEcCcHHHHHh
Confidence 32 24799999998754
No 419
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=7e-14 Score=130.96 Aligned_cols=174 Identities=16% Similarity=0.055 Sum_probs=108.6
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEe
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~ 156 (313)
-|.++|.+.+-.++. ++.+.|+.|-.|..+||+||||-||||||+.|+..--++ |..=.|. ++.
T Consensus 264 DIKiEnF~ISA~Gk~----LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaI-PpnIDvL-----------lCE 327 (807)
T KOG0066|consen 264 DIKIENFDISAQGKL----LFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAI-PPNIDVL-----------LCE 327 (807)
T ss_pred cceeeeeeeecccce----eeeccceEEEecceecccCCCCCchHHHHHHHHhhhccC-CCCCceE-----------eee
Confidence 388899998887777 899999999999999999999999999999998763211 3222222 222
Q ss_pred ccCCCCC-----------------------------cccCCcccCHHHHH-HhcCCCCCccHHHHHHHHHHhhc---CCC
Q 021380 157 MDGFHLY-----------------------------LSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRN---QGS 203 (313)
Q Consensus 157 q~~~~~~-----------------------------~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~l~~---~~~ 203 (313)
|.-.... ....|+.+.+.... .++.........+++.+|.-+|. ..+
T Consensus 328 QEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~ 407 (807)
T KOG0066|consen 328 QEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQE 407 (807)
T ss_pred eeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhc
Confidence 2211000 00012212111110 11111111123445566666663 245
Q ss_pred ccCCCCCccCCCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhcCeEEEEcChHHHHH
Q 021380 204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEKWFIEVDLDTAMQ 266 (313)
Q Consensus 204 ~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~~i~vtHd~~~~~~ 266 (313)
++...+|||.|.||++|+|+...+-+|++|+|+.-||- .+-..|..+.+..++||||..++..
T Consensus 408 rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~ 474 (807)
T KOG0066|consen 408 RPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDS 474 (807)
T ss_pred CCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHH
Confidence 66779999999999997777777777777777666665 2223444555556899999887665
No 420
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.46 E-value=3.8e-14 Score=123.50 Aligned_cols=126 Identities=9% Similarity=-0.018 Sum_probs=78.8
Q ss_pred cccccceeecCCe-EEEEECCCCCCHHHHHHHHH-HHhcccCCCCce-eeeCCCCCCCeEEEEeccCCCCCcccCCcccC
Q 021380 96 PTSALASNVNVKH-IVGLAGPPGAGKSTLAAEVV-RRINKIWPQKAS-SFDSQVKPPDVATVLPMDGFHLYLSQLDAMED 172 (313)
Q Consensus 96 iL~~is~~i~~Ge-iv~IiGpNGsGKSTLlk~L~-Gll~~~~p~~G~-i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~ 172 (313)
.+-++||++.+|+ +++|.||||||||||+|+|. +.+. +..|- +-... ...++|+.|.
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~---~~~G~~vp~~~---~~~~~~~~~~-------------- 75 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLM---AQSGLPIPAAE---GSSLPVFENI-------------- 75 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHH---HHcCCCccccc---cccCcCccEE--------------
Confidence 3457999999995 79999999999999999998 3332 22220 00000 0001111111
Q ss_pred HHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHH-----
Q 021380 173 PKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK----- 245 (313)
Q Consensus 173 l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~----- 245 (313)
+..++ .........||+||+|++.++.++ .+++++++|+++..+|.....
T Consensus 76 ----------------------~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~ 132 (200)
T cd03280 76 ----------------------FADIGDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIA 132 (200)
T ss_pred ----------------------EEecCchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHH
Confidence 00011 112334568999999999997664 688999999999999984322
Q ss_pred HHHHhhc---CeEEEEcChHHH
Q 021380 246 DVSSMFD---EKWFIEVDLDTA 264 (313)
Q Consensus 246 ~l~~l~~---~~i~vtHd~~~~ 264 (313)
.+..+.+ .++++||+.+..
T Consensus 133 ~l~~l~~~~~~vi~~tH~~~l~ 154 (200)
T cd03280 133 ILEELLERGALVIATTHYGELK 154 (200)
T ss_pred HHHHHHhcCCEEEEECCHHHHH
Confidence 2333332 257999986543
No 421
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.45 E-value=2.5e-13 Score=147.43 Aligned_cols=93 Identities=14% Similarity=0.145 Sum_probs=73.1
Q ss_pred HHHHHHHhh---cCCCccCCCCCccCCCcchhhhhcccC---ccEEEEcCcccccCh----hhHHHHHHhhc---CeEEE
Q 021380 191 LLNCLKNLR---NQGSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFI 257 (313)
Q Consensus 191 ~~~~l~~l~---~~~~~~~~~LSgGekqRv~la~al~~~---a~~li~d~~~llLDE----~~~~~l~~l~~---~~i~v 257 (313)
..+.|..+| ....++..+|||||.||+.||..+..+ ..++++|+|+..|+. .++..+.++.+ .+|+|
T Consensus 1679 ~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivi 1758 (1809)
T PRK00635 1679 PLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYI 1758 (1809)
T ss_pred HHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 345555666 345678889999999999999998754 679999999999998 34444444444 35899
Q ss_pred EcChHHHHH--HHH----------hhhhccCChhHHHH
Q 021380 258 EVDLDTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 258 tHd~~~~~~--rvi----------gr~v~~G~~~e~~~ 283 (313)
+||++.+.. +++ |++++.|+|+++..
T Consensus 1759 eH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1759 DHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred eCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 999999988 665 79999999999875
No 422
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.40 E-value=1.4e-13 Score=120.23 Aligned_cols=129 Identities=13% Similarity=0.092 Sum_probs=85.8
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHH
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~ 175 (313)
+.+|++|++..|++++|+||||+||||++++|+++.- ..+...+++-.. ..+++.+++
T Consensus 18 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~---------------la~~G~~vpa~~-----~~l~~~d~I-- 75 (204)
T cd03282 18 IPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI---------------MAQIGCFVPAEY-----ATLPIFNRL-- 75 (204)
T ss_pred EEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH---------------HHHcCCCcchhh-----cCccChhhe--
Confidence 8899999999999999999999999999999998863 111111222111 113333332
Q ss_pred HHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChh-----hHHHHH
Q 021380 176 AHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG-----VWKDVS 248 (313)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~-----~~~~l~ 248 (313)
+..++. ...+....||+|++|. ..+..++.++.++++||+...+|.. .+..+.
T Consensus 76 -------------------~~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~ 135 (204)
T cd03282 76 -------------------LSRLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILE 135 (204)
T ss_pred -------------------eEecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHH
Confidence 122221 2234556888999865 4556677788999999999988872 233343
Q ss_pred Hhhc---CeEEEEcChHHHHH
Q 021380 249 SMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 249 ~l~~---~~i~vtHd~~~~~~ 266 (313)
.+.+ .++++||+.+.+..
T Consensus 136 ~l~~~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 136 CLIKKESTVFFATHFRDIAAI 156 (204)
T ss_pred HHHhcCCEEEEECChHHHHHH
Confidence 4332 35799999998764
No 423
>PRK15453 phosphoribulokinase; Provisional
Probab=99.40 E-value=9.7e-12 Score=112.40 Aligned_cols=185 Identities=15% Similarity=0.102 Sum_probs=123.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCc-ccCCcccCHHHHH---HhcC
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL-SQLDAMEDPKEAH---ARRG 181 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~-~~ltv~e~l~~~~---~~~~ 181 (313)
++-++||.|.+||||||+.+.|...+. . . ...+.++.+|.|+.+. ..++. ..+... ..+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~---~-~----------~~~~~vi~~D~yh~ydr~~~~~--~~~~~~r~g~nfd 67 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR---R-E----------NINAAVVEGDSFHRYTRPEMKA--AIAKARAAGRHFS 67 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh---h-c----------CCCeEEEecccccccChhhHhh--hhHHHHhcCCCCC
Confidence 456999999999999999999998774 1 1 1125678899876432 12221 111110 1233
Q ss_pred C--CCCccHHHHHHHHHHhhcCCCccCCCCC------------ccCCCcchhhhhcccCccEEEEcCcccccChhhHHHH
Q 021380 182 A--PWTFNPLLLLNCLKNLRNQGSVYAPSFD------------HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 247 (313)
Q Consensus 182 ~--~~~~~~~~~~~~l~~l~~~~~~~~~~LS------------gGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l 247 (313)
. |.+.+.+.+.+.|..++.......+.|. -|.-..- ..+..++++++.||.+.+..- -...+
T Consensus 68 hf~PdAnd~dlL~~~l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~---e~i~~p~dvIivEGLh~~~~~-~~~~l 143 (290)
T PRK15453 68 HFGPEANLFDELEQLFREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPW---EPLPEGTDLLFYEGLHGGVVT-DQVDV 143 (290)
T ss_pred CCCCCcccHHHHHHHHHHHhcCCCcceeeccccccccccCCCCCCccCCc---eEecCCCcEEEEecccccccc-ccHHH
Confidence 4 6677778888888888754333333232 1211100 112345899999998776421 12567
Q ss_pred HHhhcCeEEEEcChHHHHHHHHhhhh-ccCChhHHHHHHHHhcCCchHH-HHHhhcCCCCEEeccC
Q 021380 248 SSMFDEKWFIEVDLDTAMQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 311 (313)
Q Consensus 248 ~~l~~~~i~vtHd~~~~~~rvigr~v-~~G~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~ 311 (313)
.+++|-.|+|.-+.++...|.+.|++ ++|.+.|-+...+.+.. |++. ||.|++..||+.+...
T Consensus 144 r~~~DlkIfVdp~~dlr~irRI~RD~~ERGrs~EsVi~qilrrm-Pdy~~yI~PQ~~~tdInfqrv 208 (290)
T PRK15453 144 AQHVDLLIGVVPIVNLEWIQKIHRDTSERGYSREAVMDTILRRM-PDYINYITPQFSRTHINFQRV 208 (290)
T ss_pred HHhCCeeEeeCCcHhHHHHHHHHhhhHhhCCCHHHHHHHHHHhC-ChHhhhCCCCcccCcEEEEeC
Confidence 88889899999999988877777777 48998887777777775 7776 9999999999988754
No 424
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.39 E-value=1.1e-12 Score=115.57 Aligned_cols=64 Identities=13% Similarity=0.008 Sum_probs=47.9
Q ss_pred CccCCCCCccCCCcchhhhhc----ccCccEEEEcCcccccCh----hhHHHHHHhhcC-----eEEEEcChHHHHH
Q 021380 203 SVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE-----KWFIEVDLDTAMQ 266 (313)
Q Consensus 203 ~~~~~~LSgGekqRv~la~al----~~~a~~li~d~~~llLDE----~~~~~l~~l~~~-----~i~vtHd~~~~~~ 266 (313)
+..+.+||+||||++.++.++ +.+++++++|+|+..+|+ .+++.+.++.+. +|++|||+.....
T Consensus 121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~ 197 (213)
T cd03277 121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLN 197 (213)
T ss_pred ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCc
Confidence 446679999999998776443 478999999999999998 445555555432 4799999866554
No 425
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.39 E-value=1.3e-12 Score=130.39 Aligned_cols=82 Identities=20% Similarity=0.209 Sum_probs=68.2
Q ss_pred CCccCCCCCccCCCcchhhhhcccCc---cEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHHH--HHH
Q 021380 202 GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ--RVL 269 (313)
Q Consensus 202 ~~~~~~~LSgGekqRv~la~al~~~a---~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~~--rvi 269 (313)
.-++..+|||||-||+-||.-|...+ .+.++|+|+-.|-- .+++.|..+.+. +|+|.|+++++.. +++
T Consensus 816 LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~II 895 (935)
T COG0178 816 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWII 895 (935)
T ss_pred cCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEEE
Confidence 45677899999999999999887766 78899999988876 555666666654 5899999999887 676
Q ss_pred ----------hhhhccCChhHHHH
Q 021380 270 ----------KRHISTGKPPDVAK 283 (313)
Q Consensus 270 ----------gr~v~~G~~~e~~~ 283 (313)
|++++.|+|++++.
T Consensus 896 DLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 896 DLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred EcCCCCCCCCceEEEecCHHHHHh
Confidence 69999999999976
No 426
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.36 E-value=1.3e-12 Score=110.18 Aligned_cols=122 Identities=13% Similarity=0.076 Sum_probs=78.5
Q ss_pred cceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHh
Q 021380 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (313)
Q Consensus 100 is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~ 179 (313)
.++.+.++.++.|+|||||||||+++.+...+- ...|.+...... +-++..+. ..+.+
T Consensus 14 ~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~---~~~~~~~~~~~~---------~~g~~~~~------~~~~~---- 71 (162)
T cd03227 14 NDVTFGEGSLTIITGPNGSGKSTILDAIGLALG---GAQSATRRRSGV---------KAGCIVAA------VSAEL---- 71 (162)
T ss_pred cEEecCCCCEEEEECCCCCCHHHHHHHHHHHHH---hcchhhhccCcc---------cCCCccee------eEEEE----
Confidence 344455567999999999999999999877775 444433221000 00000000 00000
Q ss_pred cCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhccc----CccEEEEcCcccccCh----hhHHHHHHhh
Q 021380 180 RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDG----GVWKDVSSMF 251 (313)
Q Consensus 180 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~----~a~~li~d~~~llLDE----~~~~~l~~l~ 251 (313)
-.....||+||+||+.+++++.. .++++++|++...+|. .+.+.+.++.
T Consensus 72 -----------------------i~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~ 128 (162)
T cd03227 72 -----------------------IFTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHL 128 (162)
T ss_pred -----------------------ehheeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 00011399999999999999975 6799999999999998 3444455544
Q ss_pred c---CeEEEEcChHHHHH
Q 021380 252 D---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 252 ~---~~i~vtHd~~~~~~ 266 (313)
. ..|++||+.+....
T Consensus 129 ~~~~~vii~TH~~~~~~~ 146 (162)
T cd03227 129 VKGAQVIVITHLPELAEL 146 (162)
T ss_pred hcCCEEEEEcCCHHHHHh
Confidence 3 35799999998754
No 427
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.35 E-value=9.2e-13 Score=114.96 Aligned_cols=127 Identities=12% Similarity=0.039 Sum_probs=72.5
Q ss_pred ccceeecCCeEEEEECCCCCCHHHHHHHHHHHh-cccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHH
Q 021380 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI-NKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (313)
Q Consensus 99 ~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll-~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~ 177 (313)
..++++.+|++++|+||||||||||+++|++.. . +..|...... ...++++.+... .+...++
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~---~~~g~~~~~~---~~~i~~~dqi~~-----~~~~~d~----- 84 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLL---AQIGCFVPAE---SASIPLVDRIFT-----RIGAEDS----- 84 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHH---HHcCCCcccc---ccccCCcCEEEE-----EecCccc-----
Confidence 345667789999999999999999999999543 2 3333221110 001222111100 0111111
Q ss_pred HhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhH----H-HHHHhhc
Q 021380 178 ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW----K-DVSSMFD 252 (313)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~----~-~l~~l~~ 252 (313)
.......++.+++| +..+...+.+++++++|+++..+|+... . .+..+.+
T Consensus 85 ------------------------i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~ 139 (202)
T cd03243 85 ------------------------ISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLE 139 (202)
T ss_pred ------------------------ccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh
Confidence 11122334455554 4444556678999999999999998322 2 2232322
Q ss_pred ---CeEEEEcChHHHHH
Q 021380 253 ---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 253 ---~~i~vtHd~~~~~~ 266 (313)
.+|++||+.+.+..
T Consensus 140 ~~~~vi~~tH~~~~~~~ 156 (202)
T cd03243 140 KGCRTLFATHFHELADL 156 (202)
T ss_pred cCCeEEEECChHHHHHH
Confidence 25799999887665
No 428
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.34 E-value=4.6e-12 Score=108.43 Aligned_cols=57 Identities=12% Similarity=0.039 Sum_probs=45.7
Q ss_pred CCccCCCcchhhhhcc----cCccEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHH
Q 021380 209 FDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAM 265 (313)
Q Consensus 209 LSgGekqRv~la~al~----~~a~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~ 265 (313)
||+||+||++++++++ .+++++++|++...+|. .+.+.+.++... +|++||+.+.+.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~ 162 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFE 162 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh
Confidence 9999999999999885 58899999999999998 344444444333 579999988764
No 429
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.34 E-value=1.1e-12 Score=122.83 Aligned_cols=155 Identities=17% Similarity=0.185 Sum_probs=103.6
Q ss_pred cccccceeecCC-----eEEEEECCCCCCHHHHHHHHHHHhcccCCCCce-eeeCCCCCCCeEEEEeccCCCCCcccCCc
Q 021380 96 PTSALASNVNVK-----HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLPMDGFHLYLSQLDA 169 (313)
Q Consensus 96 iL~~is~~i~~G-----eiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~-i~~~~~~~~~~i~~v~q~~~~~~~~~ltv 169 (313)
.+.++.|.|..| |++..+|.||.|||||+++++|.++ |+.|. | +.-.++|-+|.-. +...-||
T Consensus 351 ~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~---pd~~~e~------p~lnVSykpqkis--pK~~~tv 419 (592)
T KOG0063|consen 351 TVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK---PDEGGEI------PVLNVSYKPQKIS--PKREGTV 419 (592)
T ss_pred eeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCC---CCccCcc------cccceeccccccC--ccccchH
Confidence 345566666666 4789999999999999999999998 88763 2 2223677777622 2222344
Q ss_pred ccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHH--
Q 021380 170 MEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK-- 245 (313)
Q Consensus 170 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~-- 245 (313)
++-+.. ..++. -.+...+.++++.+. ...++.+..|||||.||++++..+-.+|.+.+.|++.+.||.+..-
T Consensus 420 R~ll~~--kIr~a--y~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~A 495 (592)
T KOG0063|consen 420 RQLLHT--KIRDA--YMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIA 495 (592)
T ss_pred HHHHHH--HhHhh--hcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHH
Confidence 433221 12211 123344556666665 3456788899999999999999999999999999999999983222
Q ss_pred ------HHHHhhcCeEEEEcChHHHH
Q 021380 246 ------DVSSMFDEKWFIEVDLDTAM 265 (313)
Q Consensus 246 ------~l~~l~~~~i~vtHd~~~~~ 265 (313)
.+....+...+|.||.-++.
T Consensus 496 skvikRfilhakktafvVEhdfImaT 521 (592)
T KOG0063|consen 496 SKVIKRFILHAKKTAFVVEHDFIMAT 521 (592)
T ss_pred HHHHHHHHHhccchhhhhhhHHHHHH
Confidence 22222222358899976554
No 430
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.30 E-value=2.4e-12 Score=100.34 Aligned_cols=67 Identities=19% Similarity=0.071 Sum_probs=54.1
Q ss_pred ccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC--------CCCeEEEEeccCCCCCccc
Q 021380 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------PPDVATVLPMDGFHLYLSQ 166 (313)
Q Consensus 95 ~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~--------~~~~i~~v~q~~~~~~~~~ 166 (313)
.+|++++|++++|++++|+||||||||||++++. +|++.++|.+ ..+.+++++|+ .++
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~--- 68 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE--- 68 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch---
Confidence 3899999999999999999999999999999974 5778887754 23446777777 222
Q ss_pred CCcccCHHH
Q 021380 167 LDAMEDPKE 175 (313)
Q Consensus 167 ltv~e~l~~ 175 (313)
.++++|+.+
T Consensus 69 ~ti~~Ni~~ 77 (107)
T cd00820 69 IRLRLNIFL 77 (107)
T ss_pred hhHHhhcee
Confidence 588999876
No 431
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.29 E-value=1.1e-12 Score=116.09 Aligned_cols=125 Identities=13% Similarity=0.101 Sum_probs=81.1
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEE-EEeccCCCCCcccCCcccCHH
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT-VLPMDGFHLYLSQLDAMEDPK 174 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~-~v~q~~~~~~~~~ltv~e~l~ 174 (313)
+.+|+++++.++++++|.||||+|||||+++|+-..- .. .+| +++.+... +..
T Consensus 19 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~---------------la-~~g~~vpa~~~~-----~~~----- 72 (222)
T cd03285 19 IPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVL---------------MA-QIGCFVPCDSAD-----IPI----- 72 (222)
T ss_pred EEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHH---------------HH-HhCCCcCcccEE-----Eec-----
Confidence 7899999999999999999999999999999874321 00 011 33332110 010
Q ss_pred HHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhc--ccCccEEEEcCc---ccccChhh--HHHH
Q 021380 175 EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGN---YLFLDGGV--WKDV 247 (313)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al--~~~a~~li~d~~---~llLDE~~--~~~l 247 (313)
+.+++..++... .....+|.|+++++.++.++ +.++.++++||+ +..+|... +..+
T Consensus 73 ----------------~~~il~~~~l~d-~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il 135 (222)
T cd03285 73 ----------------VDCILARVGASD-SQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIA 135 (222)
T ss_pred ----------------cceeEeeecccc-chhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHH
Confidence 112223333222 22568999999999998888 788999999999 77788721 2122
Q ss_pred HHhh----cCeEEEEcChHH
Q 021380 248 SSMF----DEKWFIEVDLDT 263 (313)
Q Consensus 248 ~~l~----~~~i~vtHd~~~ 263 (313)
..+. ..++++||+.+.
T Consensus 136 ~~l~~~~~~~vlisTH~~el 155 (222)
T cd03285 136 EYIATQIKCFCLFATHFHEL 155 (222)
T ss_pred HHHHhcCCCeEEEEechHHH
Confidence 2222 125799997444
No 432
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.24 E-value=6.9e-11 Score=101.72 Aligned_cols=139 Identities=24% Similarity=0.344 Sum_probs=96.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 188 (313)
+++|.|++|||||||.+.|+..+. . +.++++|+++.+...+....+ ....++.|...+.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~---~---------------~~~i~~Ddf~~~~~~~~~~~~---~~~~~d~p~a~D~ 59 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP---N---------------CCVIHQDDFFKPEDEIPVDEN---GFKQWDVLEALDM 59 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC---C---------------CeEEccccccCCcccCChHhh---cCCCCCCcccccH
Confidence 589999999999999999999873 1 456889988766533322111 2234667778888
Q ss_pred HHHHHHHHHhhcCCCccCCCCCccCCCcch-------------hhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeE
Q 021380 189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVE-------------DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 255 (313)
Q Consensus 189 ~~~~~~l~~l~~~~~~~~~~LSgGekqRv~-------------la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i 255 (313)
+.+.+.|..+........+..+.+...... -......++++++.|+.+++.|+ .+.++++..|
T Consensus 60 ~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~----~l~~l~D~~I 135 (187)
T cd02024 60 EAMMSTLDYWRETGHFPKFLRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYK----PLVDLFDIRY 135 (187)
T ss_pred HHHHHHHHHHHcCCCccCcccCccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCH----HHHhhcCcee
Confidence 888888888876543333344443322110 01123455789999999998885 5778899999
Q ss_pred EEEcChHHHHHHHHhhh
Q 021380 256 FIEVDLDTAMQRVLKRH 272 (313)
Q Consensus 256 ~vtHd~~~~~~rvigr~ 272 (313)
|+.-|.+++.+|.+.|.
T Consensus 136 fvd~~~d~~~~Rr~~R~ 152 (187)
T cd02024 136 FLRVPYETCKRRREART 152 (187)
T ss_pred EecCCHHHHHHHHHHcC
Confidence 99999999998777553
No 433
>PRK06696 uridine kinase; Validated
Probab=99.21 E-value=9.9e-11 Score=103.73 Aligned_cols=183 Identities=24% Similarity=0.347 Sum_probs=105.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCC-CC
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PW 184 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~-~~ 184 (313)
..-+|||.|++|||||||.+.|+..++ ..| ..+..+++|+|+.+.. ......+ ....+. +.
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~----~~g----------~~v~~~~~Ddf~~~~~---~r~~~~~-~~~~g~~~~ 82 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIK----KRG----------RPVIRASIDDFHNPRV---IRYRRGR-ESAEGYYED 82 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH----HcC----------CeEEEeccccccCCHH---HHHHcCC-CChhhcCcc
Confidence 456999999999999999999999985 222 1244567887764421 1000000 000000 12
Q ss_pred CccHHHHHHHHHH-hhcCCC--ccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcCh
Q 021380 185 TFNPLLLLNCLKN-LRNQGS--VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDL 261 (313)
Q Consensus 185 ~~~~~~~~~~l~~-l~~~~~--~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~ 261 (313)
..+.+.+.+.+-. +..... ...+.++.-...+..-.........+++.|+++++- ..+...++..|+++-+.
T Consensus 83 ~~d~~~L~~~l~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~-----~~~~~~~d~~i~v~~~~ 157 (223)
T PRK06696 83 AYDYTALRRLLLDPLGPNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLR-----PELRDLWDYKIFLDTDF 157 (223)
T ss_pred ccCHHHHHHHHHhhccCCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhh-----hhHHhhCCEEEEEECCH
Confidence 3455544443322 221111 111122222222221111122346789999988753 35667788889999999
Q ss_pred HHHHHHHHhhhh-ccCChhHHHHHHHHhcCCchHH-HHHhh--cCCCCEEeccCC
Q 021380 262 DTAMQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKS--KKNADLVIKSID 312 (313)
Q Consensus 262 ~~~~~rvigr~v-~~G~~~e~~~~~~~~~~~~~~~-~i~~~--~~~aD~i~~~~~ 312 (313)
+...+|+..|.. ..|...+....++ ..+.++++ |+.+. +..||+|+++.+
T Consensus 158 e~~~~R~~~Rd~~~~g~~~~~~~~~~-~r~~~~~~~y~~~~~p~~~ADivi~n~~ 211 (223)
T PRK06696 158 EVSRRRGAKRDTEAFGSYEEAEKMYL-ARYHPAQKLYIAEANPKERADVVIDNSD 211 (223)
T ss_pred HHHHHHHHHhhhhhhCCchHHHHHHH-HHHhHHHHHHHhhcChHhhCeEEEECCC
Confidence 999888886654 3576555555444 45666666 76554 788999999876
No 434
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.21 E-value=9.5e-11 Score=103.17 Aligned_cols=129 Identities=10% Similarity=0.017 Sum_probs=78.3
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHH--HhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCH
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR--RINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDP 173 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~G--ll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l 173 (313)
+-+|+++.=..+.+++|.||||+|||||||.|.. .+ +..|.+..... -.++|+.|....+. ...++.+++
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l----a~~G~~v~a~~---~~~~~~d~i~~~l~-~~~si~~~~ 89 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL----AHIGSFVPADS---ATIGLVDKIFTRMS-SRESVSSGQ 89 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH----HhCCCeeEcCC---cEEeeeeeeeeeeC-CccChhhcc
Confidence 4455555432237999999999999999999984 44 55666555432 23666666522111 112222221
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChh-----hHHHHH
Q 021380 174 KEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG-----VWKDVS 248 (313)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~-----~~~~l~ 248 (313)
. .+.. +-||++++++++..+.++++||+.-.+|+. ....++
T Consensus 90 S---------------~f~~-------------------el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~ 135 (213)
T cd03281 90 S---------------AFMI-------------------DLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIE 135 (213)
T ss_pred c---------------hHHH-------------------HHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHH
Confidence 1 0111 114456666666778999999999999962 233445
Q ss_pred Hhhc------CeEEEEcChHHHHH
Q 021380 249 SMFD------EKWFIEVDLDTAMQ 266 (313)
Q Consensus 249 ~l~~------~~i~vtHd~~~~~~ 266 (313)
.+.+ .++++||+.+.+..
T Consensus 136 ~l~~~~~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 136 HLLKRGPECPRVIVSTHFHELFNR 159 (213)
T ss_pred HHHhcCCCCcEEEEEcChHHHHHh
Confidence 5443 25799999998765
No 435
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.20 E-value=2.2e-11 Score=111.38 Aligned_cols=58 Identities=14% Similarity=-0.026 Sum_probs=44.6
Q ss_pred CCCccCCCcchhhhhccc----CccEEEEcCcccccChhhHH----HHHHhhc--CeEEEEcChHHHH
Q 021380 208 SFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVWK----DVSSMFD--EKWFIEVDLDTAM 265 (313)
Q Consensus 208 ~LSgGekqRv~la~al~~----~a~~li~d~~~llLDE~~~~----~l~~l~~--~~i~vtHd~~~~~ 265 (313)
.|||||+||++++++++. .++++++|+|...||..... .+.++.. .+|++|||++...
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~ 237 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAA 237 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHH
Confidence 599999999999986543 89999999999999994444 4443333 2579999998643
No 436
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.13 E-value=3.9e-10 Score=99.76 Aligned_cols=47 Identities=19% Similarity=0.136 Sum_probs=41.9
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHH-HhcccCCCCceeeeCC
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR-RINKIWPQKASSFDSQ 145 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~G-ll~~~~p~~G~i~~~~ 145 (313)
+.+|++|.+.+|++++|.||||+||||++++|++ .+. +..|...+..
T Consensus 20 v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~l---a~~G~~v~a~ 67 (222)
T cd03287 20 VPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIM---AQIGSFVPAS 67 (222)
T ss_pred EEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHH---HhCCCEEEcC
Confidence 7899999999999999999999999999999999 555 7888776653
No 437
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.07 E-value=1.2e-10 Score=119.95 Aligned_cols=126 Identities=10% Similarity=0.069 Sum_probs=78.1
Q ss_pred cceeecCC-eEEEEECCCCCCHHHHHHHHHHH-hcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHH
Q 021380 100 LASNVNVK-HIVGLAGPPGAGKSTLAAEVVRR-INKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (313)
Q Consensus 100 is~~i~~G-eiv~IiGpNGsGKSTLlk~L~Gl-l~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~ 177 (313)
+|+.+..+ ++++|.||||+|||||||+|+|. +. +..| .+++...... +...+.+
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~---aq~G-------------~~Vpa~~~~~----~~~~d~i---- 369 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALM---FQSG-------------IPIPANEHSE----IPYFEEI---- 369 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHH---HHhC-------------CCccCCcccc----ccchhhe----
Confidence 78888877 89999999999999999999998 33 3333 1233321100 0111110
Q ss_pred HhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChh----h-HHHHHHhhc
Q 021380 178 ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----V-WKDVSSMFD 252 (313)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~----~-~~~l~~l~~ 252 (313)
..... +.+.+ .....+||+||++++.+...+ ..+.++++|++...+|+. + +..+..+.+
T Consensus 370 -~~~i~---~~~si-----------~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~ 433 (771)
T TIGR01069 370 -FADIG---DEQSI-----------EQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLK 433 (771)
T ss_pred -eeecC---hHhHH-----------hhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 00000 00111 123567899999988886554 578999999999999982 2 223333322
Q ss_pred ---CeEEEEcChHHHH
Q 021380 253 ---EKWFIEVDLDTAM 265 (313)
Q Consensus 253 ---~~i~vtHd~~~~~ 265 (313)
.++++||+.++..
T Consensus 434 ~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 434 QNAQVLITTHYKELKA 449 (771)
T ss_pred cCCEEEEECChHHHHH
Confidence 2579999988743
No 438
>PRK07667 uridine kinase; Provisional
Probab=99.06 E-value=2.1e-09 Score=93.14 Aligned_cols=174 Identities=16% Similarity=0.206 Sum_probs=100.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCC
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT 185 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~ 185 (313)
..-+|||-|+.|||||||.+.|...+. ..| ..+.++..|+++......-...+... ...+ ...
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~----~~~----------~~~~~i~~Dd~~~~~~~~~~~~~~~~-~~~~--~~~ 78 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMK----QEG----------IPFHIFHIDDYIVERNKRYHTGFEEW-YEYY--YLQ 78 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH----hCC----------CcEEEEEcCcccchhhhHHhcCCCch-hhhh--hhh
Confidence 346999999999999999999999885 111 12566788876432210000000000 0000 001
Q ss_pred ccHHHHH-HHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChHHH
Q 021380 186 FNPLLLL-NCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTA 264 (313)
Q Consensus 186 ~~~~~~~-~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~~ 264 (313)
++...+. .++..+........|.++.-.+.+..-. ....++.++++|+++++ . ..+.++++..|+|+-+.+..
T Consensus 79 ~d~~~L~~~v~~~L~~~~~i~~P~~d~~~~~~~~~~-~~~~~~~vvIvEG~~l~-~----~~~~~~~d~~v~V~~~~~~~ 152 (193)
T PRK07667 79 WDIEWLRQKFFRKLQNETKLTLPFYHDETDTCEMKK-VQIPIVGVIVIEGVFLQ-R----KEWRDFFHYMVYLDCPRETR 152 (193)
T ss_pred hhHHHHHHHHHHhhcCCCeEEEeeeccccccccccc-eecCCCCEEEEEehhhh-h----hhHHhhceEEEEEECCHHHH
Confidence 2333333 3445555444445555555444433211 11245789999999853 2 35667889999999999998
Q ss_pred HHHHHhhhhccCChhHHHHHHHHhcCCchHH-HHHh--hcCCCCEEec
Q 021380 265 MQRVLKRHISTGKPPDVAKWRIEYNDRPNAE-LIMK--SKKNADLVIK 309 (313)
Q Consensus 265 ~~rvigr~v~~G~~~e~~~~~~~~~~~~~~~-~i~~--~~~~aD~i~~ 309 (313)
.+|++.|. |... ..+...+.+.++ |+.. .+..||+|++
T Consensus 153 ~~R~~~r~---~~~~----~~~~~r~~~a~~~y~~~~~~~~~ad~i~~ 193 (193)
T PRK07667 153 FLRESEET---QKNL----SKFKNRYWKAEDYYLETESPKDRADLVIK 193 (193)
T ss_pred HHHHhccc---HhHH----HHHHHHhHHHHHHHHhhcChHhhCcEEeC
Confidence 87776422 2222 233344556666 6543 4888999984
No 439
>PLN02796 D-glycerate 3-kinase
Probab=99.06 E-value=1.9e-09 Score=100.33 Aligned_cols=132 Identities=24% Similarity=0.328 Sum_probs=84.2
Q ss_pred cccccceee---cCCeE-----EEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccC
Q 021380 96 PTSALASNV---NVKHI-----VGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL 167 (313)
Q Consensus 96 iL~~is~~i---~~Gei-----v~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~l 167 (313)
+++++++.+ ++|+. +||+|+||||||||++.|.+++. +. | ..++.++.|++++.....
T Consensus 81 il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~---~~-g----------~~~g~IsiDdfYLt~~e~ 146 (347)
T PLN02796 81 CEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFN---AT-G----------RRAASLSIDDFYLTAADQ 146 (347)
T ss_pred HHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhc---cc-C----------CceeEEEECCcccchhhH
Confidence 678888887 45554 99999999999999999999996 43 1 124567777665432111
Q ss_pred Cc--ccCHH-HHHHhcCCCCCccHHHHHHHHHHhh----cCCCccCCCCCc----cCCCcchhh--hhcccCccEEEEcC
Q 021380 168 DA--MEDPK-EAHARRGAPWTFNPLLLLNCLKNLR----NQGSVYAPSFDH----GVGDPVEDD--ILVGLQHKVVIVDG 234 (313)
Q Consensus 168 tv--~e~l~-~~~~~~~~~~~~~~~~~~~~l~~l~----~~~~~~~~~LSg----GekqRv~la--~al~~~a~~li~d~ 234 (313)
.. .++.. .....+|.+.+.+.....+.++.+. ......+|.|+. |+-.|..-. ..+..+++++|+|+
T Consensus 147 ~~L~~q~P~n~Ll~~RG~PgThDl~Ll~e~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EG 226 (347)
T PLN02796 147 AKLAEANPGNALLELRGNAGSHDLALGVETLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEG 226 (347)
T ss_pred HHHHhhCcchhhhhcCCCCchhHHHHHHHHHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcC
Confidence 10 01100 0122345666777777777777776 234456676654 444465321 12335689999999
Q ss_pred cccccCh
Q 021380 235 NYLFLDG 241 (313)
Q Consensus 235 ~~llLDE 241 (313)
.+++.-+
T Consensus 227 w~vG~~p 233 (347)
T PLN02796 227 WMLGFKP 233 (347)
T ss_pred cccCCCC
Confidence 9999843
No 440
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.05 E-value=6.8e-10 Score=97.95 Aligned_cols=35 Identities=26% Similarity=0.245 Sum_probs=32.2
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
+.+|++|++.+ ++++|+||||+|||||+|+|++..
T Consensus 20 v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 20 VPNDTELDPER-QILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred EeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHH
Confidence 78899999987 999999999999999999998764
No 441
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.02 E-value=1.3e-10 Score=111.65 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=43.4
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc-eeeeCCCC
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQVK 147 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G-~i~~~~~~ 147 (313)
+|++|||++.+||+++|+|||||||||||+ .|+.. |++| +|.++|.+
T Consensus 21 vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~---~~sGg~I~ldg~~ 68 (504)
T TIGR03238 21 ILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK---FSEGYEFFLDATH 68 (504)
T ss_pred HHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC---CCCCCEEEECCEE
Confidence 899999999999999999999999999999 67777 8888 79999865
No 442
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.00 E-value=4.1e-10 Score=102.37 Aligned_cols=37 Identities=22% Similarity=0.199 Sum_probs=34.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~ 147 (313)
.-++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~~ 148 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGKK 148 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCEE
Confidence 5789999999999999999999999 999999998864
No 443
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.98 E-value=2.3e-09 Score=97.77 Aligned_cols=59 Identities=14% Similarity=0.091 Sum_probs=46.5
Q ss_pred CCCCccCCCcchhhhhcc---------cCccEEEEcCcccccChhhHHHHHHhhc---CeEEEEcChHHHH
Q 021380 207 PSFDHGVGDPVEDDILVG---------LQHKVVIVDGNYLFLDGGVWKDVSSMFD---EKWFIEVDLDTAM 265 (313)
Q Consensus 207 ~~LSgGekqRv~la~al~---------~~a~~li~d~~~llLDE~~~~~l~~l~~---~~i~vtHd~~~~~ 265 (313)
..+|+||+|++.++++++ ..+.++++|+++..||+...+.+.+.+. .+++++|+.+.+.
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~q~ii~~~~~~~~~ 252 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRVQTFVTTTDLADFD 252 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCCCEEEEeCCchhcc
Confidence 368999999999999875 6889999999999999966555555543 4578888776543
No 444
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.95 E-value=1.4e-10 Score=99.75 Aligned_cols=60 Identities=7% Similarity=-0.075 Sum_probs=38.7
Q ss_pred ccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChh----h-HHHHHHhhc----CeEEEEcChHHH
Q 021380 204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----V-WKDVSSMFD----EKWFIEVDLDTA 264 (313)
Q Consensus 204 ~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~----~-~~~l~~l~~----~~i~vtHd~~~~ 264 (313)
.....||+|++|...+. ..+.+++++++||++..+|+. + ...++.+.+ .++++||+.+..
T Consensus 57 ~~~s~fs~~~~~l~~~l-~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~ 125 (185)
T smart00534 57 QGLSTFMVEMKETANIL-KNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELT 125 (185)
T ss_pred ccccHHHHHHHHHHHHH-HhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHH
Confidence 34557788777644332 234478999999999999983 2 222333332 257999999654
No 445
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.95 E-value=1.2e-09 Score=106.41 Aligned_cols=72 Identities=19% Similarity=0.305 Sum_probs=58.1
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHH
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~ 175 (313)
++++.++.+.+|.+++|+||||+||||++..|++.+. ...|. ..++++.+|.+ ..++.|++.+
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~---~~~G~---------~kV~LI~~Dt~-----RigA~EQLr~ 307 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV---MRHGA---------SKVALLTTDSY-----RIGGHEQLRI 307 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH---HhcCC---------CeEEEEeCCcc-----chhHHHHHHH
Confidence 5667778888999999999999999999999999886 44442 24788998853 2678999999
Q ss_pred HHHhcCCCC
Q 021380 176 AHARRGAPW 184 (313)
Q Consensus 176 ~~~~~~~~~ 184 (313)
+...++.+.
T Consensus 308 ~AeilGVpv 316 (484)
T PRK06995 308 YGKILGVPV 316 (484)
T ss_pred HHHHhCCCe
Confidence 888877654
No 446
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.90 E-value=5.9e-09 Score=93.78 Aligned_cols=57 Identities=9% Similarity=0.079 Sum_probs=42.7
Q ss_pred CCCccC--------CCcchhhhhcccCccEEEEcCcccccC---h---hhHHHHHHhhcCeEEEEcChHHHHH
Q 021380 208 SFDHGV--------GDPVEDDILVGLQHKVVIVDGNYLFLD---G---GVWKDVSSMFDEKWFIEVDLDTAMQ 266 (313)
Q Consensus 208 ~LSgGe--------kqRv~la~al~~~a~~li~d~~~llLD---E---~~~~~l~~l~~~~i~vtHd~~~~~~ 266 (313)
.+|||+ +||+++|+++..++.+.++ .+.++| | .+.+.+....+..|+++|++.....
T Consensus 129 ~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~la~~~~ 199 (249)
T cd01128 129 ILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAERRI 199 (249)
T ss_pred CCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchHHHHHhcCCCcEEEEchHHhhCCC
Confidence 469999 9999999998778888888 677777 2 2334444444667899999887654
No 447
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.87 E-value=3.4e-09 Score=91.30 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=41.5
Q ss_pred ccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCC
Q 021380 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 97 L~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~ 146 (313)
.+=+.+.+.+|+.++|+||||||||||++.|+|+++ |+.|.|.+.+.
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~---~~~~~i~ied~ 61 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP---PDERIITIEDT 61 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC---CCCCEEEECCc
Confidence 444667899999999999999999999999999998 99998888663
No 448
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.87 E-value=1.8e-09 Score=95.11 Aligned_cols=59 Identities=12% Similarity=0.036 Sum_probs=39.0
Q ss_pred CCCccCCCcchhhhhcc----cCccEEEEcCcccccCh----hhHHHHHHhhc--CeEEEEcChHHHHH
Q 021380 208 SFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ 266 (313)
Q Consensus 208 ~LSgGekqRv~la~al~----~~a~~li~d~~~llLDE----~~~~~l~~l~~--~~i~vtHd~~~~~~ 266 (313)
.||||||.+++||..++ .+..++++|+...-||+ .+.+.|.++.+ ..|++||+......
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~ 204 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFED 204 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999986653 46778888888888888 44445555542 36899999877644
No 449
>PRK08233 hypothetical protein; Provisional
Probab=98.86 E-value=6.1e-08 Score=82.50 Aligned_cols=79 Identities=27% Similarity=0.403 Sum_probs=50.1
Q ss_pred cEEEEcCcccccChhhHHHHHHhhcCeEEEEcChHHHHHHHHhhhhccCChhH---HHHHHHHhcCCchHH-HHHhhcCC
Q 021380 228 KVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPD---VAKWRIEYNDRPNAE-LIMKSKKN 303 (313)
Q Consensus 228 ~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~~~~rvigr~v~~G~~~e---~~~~~~~~~~~~~~~-~i~~~~~~ 303 (313)
.+++.|.++..+. +.+.+.++..|++..+.+....|++.|.......++ ....++. ..++.+. ++.+.+..
T Consensus 79 ~~vivd~~~~~~~----~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~-~~~~~y~~~~~~~~~~ 153 (182)
T PRK08233 79 DYIIVDYPFAYLN----SEMRQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLN-YARPLYLEALHTVKPN 153 (182)
T ss_pred eEEEEeeehhhcc----HHHHHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHH-HHHHHHHHHhhcCccC
Confidence 5677888776555 345666788899999999988887766543322222 2333333 3344443 55666677
Q ss_pred CCEEeccC
Q 021380 304 ADLVIKSI 311 (313)
Q Consensus 304 aD~i~~~~ 311 (313)
||+++++.
T Consensus 154 ~~~vId~~ 161 (182)
T PRK08233 154 ADIVLDGA 161 (182)
T ss_pred CeEEEcCC
Confidence 89998754
No 450
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=98.84 E-value=5.9e-08 Score=92.22 Aligned_cols=175 Identities=19% Similarity=0.203 Sum_probs=98.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCc-c-cCHHH-HHHhcCC
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDA-M-EDPKE-AHARRGA 182 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv-~-e~l~~-~~~~~~~ 182 (313)
+.-+|||.|++|||||||++.|.++++ +. | ..++.+.+|++++......- . .|... ....+|.
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~---~~-g----------~~vgvISiDDfYLt~eer~kL~~~nP~n~LL~~RG~ 276 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFR---VT-G----------RKSATLSIDDFYLTAEGQAELRERNPGNALLELRGN 276 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc---cc-C----------CceEEEEECCccCChHHHHHHHhhCccchhhcccCC
Confidence 447999999999999999999999996 42 1 23567888877643211100 0 00000 0112345
Q ss_pred CCCccHHHHHHHHHHhh----cCCCccCCCCCc----cCCCcchhh--hhcccCccEEEEcCcccccChh----------
Q 021380 183 PWTFNPLLLLNCLKNLR----NQGSVYAPSFDH----GVGDPVEDD--ILVGLQHKVVIVDGNYLFLDGG---------- 242 (313)
Q Consensus 183 ~~~~~~~~~~~~l~~l~----~~~~~~~~~LSg----GekqRv~la--~al~~~a~~li~d~~~llLDE~---------- 242 (313)
+...+.....+.+..+. .+....+|.|+. |+..|+.-. ..+..+++++|+||.++++-+.
T Consensus 277 PGTHDv~Lg~e~L~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~~~~~l~~~D~ 356 (460)
T PLN03046 277 AGSHDLQFSVETLEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPLPNEVVKAVDP 356 (460)
T ss_pred CccccHhhHHHHHHHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCCChHHhhccCh
Confidence 66666666666666653 344455665553 445565432 2234668999999999988430
Q ss_pred ----hHHHHHHh-------hcCeE-EEEcChHHHHHHHH---hhhhcc---CChhHHHHHHHHhcCCchHH
Q 021380 243 ----VWKDVSSM-------FDEKW-FIEVDLDTAMQRVL---KRHIST---GKPPDVAKWRIEYNDRPNAE 295 (313)
Q Consensus 243 ----~~~~l~~l-------~~~~i-~vtHd~~~~~~rvi---gr~v~~---G~~~e~~~~~~~~~~~~~~~ 295 (313)
+-+.|... ++..| +-.-|.+.+.++.. .+.... |-.++.+.. +...++|.++
T Consensus 357 ~l~~VN~~L~~Y~~~w~~~~D~li~L~a~d~~~Vy~WRlqQE~kLr~~gg~GMsdeqV~~-FV~~YmPaY~ 426 (460)
T PLN03046 357 QLEVVNKNLEAYYDAWDKFIDAWVVIKIQDPSCVYQWRLQAEIAMRADGKPGMSDEEVMD-FVSRYLPAYK 426 (460)
T ss_pred hHHHHHHHHHHHHHHHHHhhceeEEeeCCChhHHHHHHHHHHHHHHHcCCCCCCHHHHHH-HHHHhhhHHH
Confidence 11112222 22223 44577777777444 222222 444455444 4556677776
No 451
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.80 E-value=1.9e-09 Score=101.36 Aligned_cols=159 Identities=16% Similarity=0.109 Sum_probs=93.6
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEe----ccCCCCCc-ccC---CcccCHHH
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP----MDGFHLYL-SQL---DAMEDPKE 175 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~----q~~~~~~~-~~l---tv~e~l~~ 175 (313)
..+|++.|++|-||-||||-+++++|-++ |.-|.....- +-...++|+- |+.+.... ..+ .-.+++..
T Consensus 97 prpg~vlglvgtngigkstAlkilagk~k---pnlg~~~~pp-~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ 172 (592)
T KOG0063|consen 97 PRPGQVLGLVGTNGIGKSTALKILAGKQK---PNLGRYDNPP-DWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQ 172 (592)
T ss_pred CCcchhccccccCcccHHHHHHHHhCCCC---CCCCCCCCCc-chHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHH
Confidence 35899999999999999999999999999 8877542110 0000111110 11110000 000 00111111
Q ss_pred H-HHhcCC-----CCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccCh----hh
Q 021380 176 A-HARRGA-----PWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GV 243 (313)
Q Consensus 176 ~-~~~~~~-----~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE----~~ 243 (313)
. ....+. ....+.....++++.+. ...++.+.+||||+-||.++|.+.+..+++.++|++---||- ..
T Consensus 173 ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLka 252 (592)
T KOG0063|consen 173 IPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKA 252 (592)
T ss_pred HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhH
Confidence 1 000100 00011112223333333 345678889999999999999999999999999999999986 22
Q ss_pred HHHHHHhhc---CeEEEEcChHHHHH
Q 021380 244 WKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 244 ~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
...|+.+.. .+|+|.||+.+...
T Consensus 253 A~~IRsl~~p~~YiIVVEHDLsVLDy 278 (592)
T KOG0063|consen 253 AITIRSLINPDRYIIVVEHDLSVLDY 278 (592)
T ss_pred HHHHHHhhCCCCeEEEEEeechHHHh
Confidence 334444443 36899999998765
No 452
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.77 E-value=2e-08 Score=88.60 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=34.2
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
+-+|++|++.+|++++|.||||+||||+++++++..
T Consensus 19 v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~ 54 (218)
T cd03286 19 VPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAV 54 (218)
T ss_pred EEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHH
Confidence 789999999999999999999999999999999875
No 453
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.77 E-value=1.4e-08 Score=97.91 Aligned_cols=79 Identities=14% Similarity=0.077 Sum_probs=64.4
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCC---CC----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ---VK---- 147 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~---~~---- 147 (313)
.+.++.+++++.|... +.+++.++ .|.+|++++|+|+||+|||||+++|+++.. |+.|.|.+.| .+
T Consensus 137 p~~~~r~~v~~~l~TG---i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~ 209 (450)
T PRK06002 137 PPAMTRARVETGLRTG---VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREF 209 (450)
T ss_pred CCCeEeecceEEcCCC---cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHH
Confidence 3468999999999632 23888885 999999999999999999999999999998 9999887754 22
Q ss_pred --------CCCeEEEEeccCC
Q 021380 148 --------PPDVATVLPMDGF 160 (313)
Q Consensus 148 --------~~~~i~~v~q~~~ 160 (313)
..+.+++++|.+.
T Consensus 210 ~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 210 LEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred hHHHHHHhhCCeEEEEEcCCC
Confidence 1246899999753
No 454
>PRK06547 hypothetical protein; Provisional
Probab=98.76 E-value=1.1e-07 Score=80.86 Aligned_cols=151 Identities=13% Similarity=0.043 Sum_probs=85.0
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~ 184 (313)
.+-.+|+|.|++|||||||.+.|+..+. +.++.+|.++... + .+ +
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~-------------------~~~~~~d~~~~~~---~---~~---------~- 57 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTG-------------------FQLVHLDDLYPGW---H---GL---------A- 57 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC-------------------CCeecccceeccc---c---cC---------C-
Confidence 3456899999999999999999998764 3456667543211 1 10 0
Q ss_pred CccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhc-----CeEEEEc
Q 021380 185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-----EKWFIEV 259 (313)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~-----~~i~vtH 259 (313)
.....+.+.+..-+.. ...+ ++.-...+... ..+.+..+++.++-..+.+ .+.++++ ..|+++-
T Consensus 58 -~~~~~l~~~~l~~g~~--~~~~-yd~~~~~~~~~--~~l~~~~vVIvEG~~al~~-----~~r~~~d~~g~v~~I~ld~ 126 (172)
T PRK06547 58 -AASEHVAEAVLDEGRP--GRWR-WDWANNRPGDW--VSVEPGRRLIIEGVGSLTA-----ANVALASLLGEVLTVWLDG 126 (172)
T ss_pred -hHHHHHHHHHHhCCCC--ceec-CCCCCCCCCCc--EEeCCCCeEEEEehhhccH-----HHHHHhccCCCEEEEEEEC
Confidence 0112222222221111 1111 22111111111 1223467888898877654 3455555 4689999
Q ss_pred ChHHHHHHHHhhhhccCChhHHHHHHHHhcCCchHH-HHH--hhcCCCCEEec
Q 021380 260 DLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAE-LIM--KSKKNADLVIK 309 (313)
Q Consensus 260 d~~~~~~rvigr~v~~G~~~e~~~~~~~~~~~~~~~-~i~--~~~~~aD~i~~ 309 (313)
+.+....|++.|... ... +...+.+.++ |+. +.+..||+++.
T Consensus 127 ~~~vr~~R~~~Rd~~-------~~~-~~~~w~~~e~~~~~~~~~~~~ad~~~~ 171 (172)
T PRK06547 127 PEALRKERALARDPD-------YAP-HWEMWAAQEERHFARYDPRDVADWLGS 171 (172)
T ss_pred CHHHHHHHHHhcCch-------hhH-HHHHHHHHHHHHHhcCCChhccEEEec
Confidence 999999888877532 112 2234456666 553 36899999874
No 455
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.75 E-value=4.3e-08 Score=91.08 Aligned_cols=42 Identities=19% Similarity=0.263 Sum_probs=36.6
Q ss_pred cceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeC
Q 021380 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS 144 (313)
Q Consensus 100 is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~ 144 (313)
+++.+..|..++|+||+|||||||++.|+++++ ++.|.+.+.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~---~~~~iv~ie 178 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP---KDERIITIE 178 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC---ccccEEEEc
Confidence 678899999999999999999999999999997 766655543
No 456
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.70 E-value=5e-09 Score=108.25 Aligned_cols=126 Identities=10% Similarity=0.005 Sum_probs=76.4
Q ss_pred cceeec-CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHH
Q 021380 100 LASNVN-VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (313)
Q Consensus 100 is~~i~-~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~ 178 (313)
.++.+. .+.++.|.|||++||||+||.+....- .... +.+||-... ..+.+.+++.
T Consensus 319 ndi~l~~~~~~~iITGpN~gGKTt~lktigl~~~--maq~-------------G~~vpa~~~----~~i~~~~~i~---- 375 (782)
T PRK00409 319 KDISLGFDKTVLVITGPNTGGKTVTLKTLGLAAL--MAKS-------------GLPIPANEP----SEIPVFKEIF---- 375 (782)
T ss_pred ceeEECCCceEEEEECCCCCCcHHHHHHHHHHHH--HHHh-------------CCCcccCCC----ccccccceEE----
Confidence 345554 356899999999999999999965421 0111 123333310 0122222210
Q ss_pred hcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChh----hHH-HHHHhh
Q 021380 179 RRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWK-DVSSMF 251 (313)
Q Consensus 179 ~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~----~~~-~l~~l~ 251 (313)
..++. .......+||+||++++.++.++ ..+.++++|++...+|+. +.. .+..+.
T Consensus 376 -----------------~~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~ 437 (782)
T PRK00409 376 -----------------ADIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLR 437 (782)
T ss_pred -----------------EecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH
Confidence 11221 11235668999999999998777 577899999999999982 222 222222
Q ss_pred c---CeEEEEcChHHHHH
Q 021380 252 D---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 252 ~---~~i~vtHd~~~~~~ 266 (313)
+ .+|++||+.++...
T Consensus 438 ~~~~~vIitTH~~el~~~ 455 (782)
T PRK00409 438 KRGAKIIATTHYKELKAL 455 (782)
T ss_pred HCCCEEEEECChHHHHHH
Confidence 2 25799999887654
No 457
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.69 E-value=8.2e-09 Score=108.01 Aligned_cols=90 Identities=17% Similarity=0.203 Sum_probs=69.9
Q ss_pred HHHHhhcC---CCccCCCCCccCCCcchhhhhcccCc--cEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcCh
Q 021380 194 CLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDL 261 (313)
Q Consensus 194 ~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~a--~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~ 261 (313)
.|+.++.. .++++.+|||||+||+.||++++..+ .++++|+|+..||+ .+++.|.++.+ .+|+|+||+
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~ 551 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDE 551 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 45556643 47788899999999999999998876 89999999999999 44555555543 257999999
Q ss_pred HHHHH--HHH----------hhhhccCChhHHHH
Q 021380 262 DTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 262 ~~~~~--rvi----------gr~v~~G~~~e~~~ 283 (313)
+++.. |++ |+++..|+++++..
T Consensus 552 ~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 552 DTIRAADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred HHHHhCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 98765 443 47888888888743
No 458
>COG4240 Predicted kinase [General function prediction only]
Probab=98.66 E-value=2.8e-07 Score=80.34 Aligned_cols=126 Identities=29% Similarity=0.446 Sum_probs=88.2
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccC-CcccCHHHHHHhcC
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL-DAMEDPKEAHARRG 181 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~l-tv~e~l~~~~~~~~ 181 (313)
+-.+.-|+||.||.||||||+.-.|..++. ...| .++++++.|++++...+. ...++..-....+|
T Consensus 46 e~grPli~gisGpQGSGKStls~~i~~~L~---~kg~----------ert~~lSLDDlYlthadrl~La~q~npllq~RG 112 (300)
T COG4240 46 ERGRPLIVGISGPQGSGKSTLSALIVRLLA---AKGL----------ERTATLSLDDLYLTHADRLRLARQVNPLLQTRG 112 (300)
T ss_pred hcCCceEEEeecCCCCchhhHHHHHHHHHH---Hhcc----------cceEEeehhhhhcchHHHHHHHHhcCchhcccC
Confidence 345567999999999999999999999986 2111 247889999876543211 11111111233568
Q ss_pred CCCCccHHHHHHHHHHhh-cCCCccCCCCCc----cCCCcchhhhhcccCccEEEEcCcccccCh
Q 021380 182 APWTFNPLLLLNCLKNLR-NQGSVYAPSFDH----GVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (313)
Q Consensus 182 ~~~~~~~~~~~~~l~~l~-~~~~~~~~~LSg----GekqRv~la~al~~~a~~li~d~~~llLDE 241 (313)
.|.+.|.....++|+.+. ......+|.|.. |.-.|.--......++.++|+++.++..-+
T Consensus 113 lpGTHD~tlglnVLnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~~vdivIlEGWfvGfrP 177 (300)
T COG4240 113 LPGTHDPTLGLNVLNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKFEVDIVILEGWFVGFRP 177 (300)
T ss_pred CCCCCchHHHHHHHHHHhcCCCCcccccccchhccCCCCCCCcccceecceeEEEEeeeeeeccc
Confidence 888999998889999887 344557778876 888886555555556889999999988766
No 459
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.64 E-value=2.1e-08 Score=96.41 Aligned_cols=81 Identities=20% Similarity=0.191 Sum_probs=59.0
Q ss_pred cccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcee---eeCCCC--------------CCCeEEEEe
Q 021380 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS---FDSQVK--------------PPDVATVLP 156 (313)
Q Consensus 94 ~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i---~~~~~~--------------~~~~i~~v~ 156 (313)
+.+++++ |.+.+|++++|+|+||+|||||+++|+|+.+ ++.+.+ -.++.. .+..+++.+
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~---~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~ 218 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ---ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAP 218 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccC---CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEec
Confidence 3499999 9999999999999999999999999999987 775322 222211 123578888
Q ss_pred ccCCCCCcccCCcccCHHHHHHhc
Q 021380 157 MDGFHLYLSQLDAMEDPKEAHARR 180 (313)
Q Consensus 157 q~~~~~~~~~ltv~e~l~~~~~~~ 180 (313)
++..... .+++.++....+.++
T Consensus 219 ~d~s~~~--rl~a~e~a~~iAEyf 240 (434)
T PRK07196 219 ADESPLM--RIKATELCHAIATYY 240 (434)
T ss_pred CCCChhh--hHHHHHHHHHHHHHh
Confidence 8854332 467777776665554
No 460
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.60 E-value=1.5e-07 Score=83.78 Aligned_cols=42 Identities=12% Similarity=0.187 Sum_probs=33.8
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHH-HHHHHHHhc
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTL-AAEVVRRIN 132 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTL-lk~L~Gll~ 132 (313)
+.++++.+.+++ .+++|++++|.|+|||||||| ++.+.+.++
T Consensus 8 ~~~~~ld~~l~g-------------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~ 50 (230)
T PRK08533 8 LSRDELHKRLGG-------------GIPAGSLILIEGDESTGKSILSQRLAYGFLQ 50 (230)
T ss_pred EEEeeeehhhCC-------------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 445666666654 268899999999999999999 689998875
No 461
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.59 E-value=3.4e-08 Score=103.25 Aligned_cols=81 Identities=16% Similarity=0.196 Sum_probs=64.4
Q ss_pred CCccCCCCCccCCCcchhhhhcccCc--cEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH--HHH-
Q 021380 202 GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ--RVL- 269 (313)
Q Consensus 202 ~~~~~~~LSgGekqRv~la~al~~~a--~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~--rvi- 269 (313)
.++.+.+|||||+||+.||++++..+ .++++|+|+..||+ .+.+.|.++.+ .+|+|+||++++.. |++
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~ 560 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVID 560 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEE
Confidence 46788899999999999999998875 89999999999999 44555555544 35799999998765 433
Q ss_pred ---------hhhhccCChhHHH
Q 021380 270 ---------KRHISTGKPPDVA 282 (313)
Q Consensus 270 ---------gr~v~~G~~~e~~ 282 (313)
|++++.|++.++.
T Consensus 561 LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 561 IGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred ecccccCCCCEEeeccCHHHHh
Confidence 5778888887764
No 462
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.55 E-value=1.5e-08 Score=88.92 Aligned_cols=46 Identities=7% Similarity=-0.079 Sum_probs=36.6
Q ss_pred CCCCcc--CCCcchhhhhcccCccEEEEcCcc-----cccChhhHHHHHHhhc
Q 021380 207 PSFDHG--VGDPVEDDILVGLQHKVVIVDGNY-----LFLDGGVWKDVSSMFD 252 (313)
Q Consensus 207 ~~LSgG--ekqRv~la~al~~~a~~li~d~~~-----llLDE~~~~~l~~l~~ 252 (313)
...+|+ +++++.||++++.+++++++|+|+ ..||+...+.+.+++.
T Consensus 149 Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~ 201 (215)
T PTZ00132 149 SAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQ 201 (215)
T ss_pred eCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHH
Confidence 345555 777899999999999999999999 9999966666555543
No 463
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.54 E-value=2.9e-07 Score=88.87 Aligned_cols=103 Identities=12% Similarity=0.043 Sum_probs=65.1
Q ss_pred cccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC---C-----------CCeEEEE----
Q 021380 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---P-----------PDVATVL---- 155 (313)
Q Consensus 94 ~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~---~-----------~~~i~~v---- 155 (313)
+.+++++ |.+.+|++++|+|+||+|||||+++|+|+.+. .+.|.|.+.|+. . ....+++
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~--~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvat 228 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEE--ADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVST 228 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhccccc--CCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeC
Confidence 4488888 99999999999999999999999999998841 344555553321 0 1123444
Q ss_pred -eccCCCCCcccCCcccCHHHHHHhcCCC---CCccHHHHHHHHHHhhc
Q 021380 156 -PMDGFHLYLSQLDAMEDPKEAHARRGAP---WTFNPLLLLNCLKNLRN 200 (313)
Q Consensus 156 -~q~~~~~~~~~ltv~e~l~~~~~~~~~~---~~~~~~~~~~~l~~l~~ 200 (313)
+|++..-.++.+ +...++......+.. ...+..++.++++.++.
T Consensus 229 s~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L 276 (442)
T PRK06315 229 SDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGL 276 (442)
T ss_pred CCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCc
Confidence 666543333323 333344444333322 12345677788888875
No 464
>PRK13695 putative NTPase; Provisional
Probab=98.48 E-value=8.9e-08 Score=81.40 Aligned_cols=128 Identities=14% Similarity=0.090 Sum_probs=74.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 188 (313)
.++|+|+||+|||||++.|.+.+. + .|. . ..+|+.++... . .....++.... . .. .
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~---~-~G~-~--------~~g~~~~~~~~-~-~~~~~~~~~~~----~--~~--~- 57 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK---E-EGY-K--------VGGFYTEEVRE-G-GKRIGFKIIDL----D--TG--E- 57 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH---H-CCC-e--------EEEEEcHHHHh-c-CCccceEEEEc----C--CC--C-
Confidence 589999999999999999999886 4 341 1 13455443111 1 00111110000 0 00 0
Q ss_pred HHHHHHHHHhhc----CCCccCCCCCccCCCcchhhhhcccCccEEEEcC--cccccChhhHHHHHHhhcC---eEEEEc
Q 021380 189 LLLLNCLKNLRN----QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG--NYLFLDGGVWKDVSSMFDE---KWFIEV 259 (313)
Q Consensus 189 ~~~~~~l~~l~~----~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~--~~llLDE~~~~~l~~l~~~---~i~vtH 259 (313)
...+...+. ...++...+|++++-+..+.......++++++|+ ++-.+|+...+.+..+.+. +|+++|
T Consensus 58 ---~~~l~~~~~~~~~~~~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h 134 (174)
T PRK13695 58 ---EGILARVGFPSRPRVGKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLH 134 (174)
T ss_pred ---eEEccccCCCCCCceeeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEEC
Confidence 001111111 1123344789999888888777667788888887 5555566666777766643 479999
Q ss_pred ChHH
Q 021380 260 DLDT 263 (313)
Q Consensus 260 d~~~ 263 (313)
+...
T Consensus 135 ~~~~ 138 (174)
T PRK13695 135 RRSV 138 (174)
T ss_pred chhh
Confidence 9644
No 465
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.46 E-value=4.9e-07 Score=86.90 Aligned_cols=96 Identities=21% Similarity=0.274 Sum_probs=61.0
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCC
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~ 183 (313)
+.+|++++|+||||+||||+++.|++... -..| ...++++..|.+. ....+.+.+.....+.+
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~---~~~~---------~~~v~~i~~d~~r-----igalEQL~~~a~ilGvp 250 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAV---IRHG---------ADKVALLTTDSYR-----IGGHEQLRIYGKLLGVS 250 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHH---HhcC---------CCeEEEEecCCcc-----hhHHHHHHHHHHHcCCc
Confidence 47899999999999999999999999752 1111 1236777777542 34566677777776765
Q ss_pred CC--ccHHHHHHHHHHhhcCCCccCCCCCccCCCcch
Q 021380 184 WT--FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 184 ~~--~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~ 218 (313)
.. .+...+...+..+.......+.+ .|+.||..
T Consensus 251 ~~~v~~~~dl~~al~~l~~~d~VLIDT--aGrsqrd~ 285 (420)
T PRK14721 251 VRSIKDIADLQLMLHELRGKHMVLIDT--VGMSQRDQ 285 (420)
T ss_pred eecCCCHHHHHHHHHHhcCCCEEEecC--CCCCcchH
Confidence 32 23333444444444444444444 58888754
No 466
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.46 E-value=3.8e-07 Score=89.66 Aligned_cols=45 Identities=22% Similarity=0.359 Sum_probs=38.8
Q ss_pred ceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 83 MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 83 ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+...+|+.. +++|+-+.+ +|.+++|.||+||||||+.+.|+..+.
T Consensus 265 ~A~~~g~~R----LIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~ 309 (512)
T PRK13477 265 IAVRCGSTR----LIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLG 309 (512)
T ss_pred EEEEeCCeE----EEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 345566655 999999988 889999999999999999999998874
No 467
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.43 E-value=3.1e-07 Score=90.24 Aligned_cols=61 Identities=20% Similarity=0.233 Sum_probs=55.5
Q ss_pred EccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC
Q 021380 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 80 v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~ 147 (313)
+.|+++.||... +++++++.+..|+.++|+||||+|||||++.|.|+++ |.+|++.++...
T Consensus 187 ~~d~~~v~Gq~~----~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllp---p~~g~e~le~~~ 247 (506)
T PRK09862 187 QHDLSDVIGQEQ----GKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLP---DLSNEEALESAA 247 (506)
T ss_pred ccCeEEEECcHH----HHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCC---CCCCcEEEecch
Confidence 458999998877 8999999999999999999999999999999999999 999998776654
No 468
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=98.42 E-value=9.1e-07 Score=86.37 Aligned_cols=191 Identities=26% Similarity=0.393 Sum_probs=128.4
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHH---hcC
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA---RRG 181 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~---~~~ 181 (313)
...-++|+.|..++||||.+..+...+.++ +.+| ....+..++++.++- .+| .+++..... ...
T Consensus 42 ~~~~~igv~~~s~~Gk~~~~~~i~~~l~~~-~~~~--------~~~~v~~ls~~~fY~---~lt-~~~~~~a~~~~~~f~ 108 (473)
T KOG4203|consen 42 KEPFVIGVAGGTASGKSTVCEKIVEQLGAI-ERDG--------RQPQVVLLSQDSFYK---VLT-SEELAKAQEGKYNFD 108 (473)
T ss_pred cceEEEEeecCcccCceeehHHHHHHhhhh-hhcc--------CCCeEEEeecHHHHH---hhc-hHHHHHhhhcccccc
Confidence 345689999999999999777666655321 2233 122356667764432 133 233333222 234
Q ss_pred CCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcCh
Q 021380 182 APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDL 261 (313)
Q Consensus 182 ~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~ 261 (313)
.+..++.+.+...++.+..+....++-|+.=--+|..--..++.++.++++++-+.+.| ..++++.+..+|++-|.
T Consensus 109 ~pda~~~~l~~~~~~~~~kg~~v~ip~y~~~~~~~~~~~~~~l~~~~~~ilegil~~yd----~~~~~l~~~k~fvd~~~ 184 (473)
T KOG4203|consen 109 HPDAFDFELLYLTLKNLKKGKAVEIPVYDFVTHSRDEEKTIVVYPADVIILEGILAFYD----ERVRDLFTMKLFVDTDA 184 (473)
T ss_pred CCCCcchhhHHHHHhcccccceeeceeeeeecccCCCCceEEecCCCceeehhHHHHhH----HHHHHHhcceEEEecCc
Confidence 55666767677777777666666666555433333211112345688899999999999 47777888889999999
Q ss_pred HHHHHHHH-hhhhccCChhHHHHHHHHhcCCchHH-HHHhhcCCCCEEeccCC
Q 021380 262 DTAMQRVL-KRHISTGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 312 (313)
Q Consensus 262 ~~~~~rvi-gr~v~~G~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~~ 312 (313)
+....+++ |-..+.|...+-+..+|..++.|+++ ||.|++..||++++...
T Consensus 185 d~rla~ri~r~~~~~g~~l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~~~ 237 (473)
T KOG4203|consen 185 DVRLARRILRDIVERGRDLESILTQYSTFVKPAFEEFILPTKKYADVIIPRGG 237 (473)
T ss_pred chhhHHHHhcchhhhcccHHHHHHHHHhhcCchHHHHhhHHHHhhhheeeccc
Confidence 99888555 66667888777777777778888888 99999999999998753
No 469
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.41 E-value=3.9e-07 Score=63.82 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=29.5
Q ss_pred ccccceeecC-CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 97 TSALASNVNV-KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 97 L~~is~~i~~-Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+++..+++.+ |.++.|.|+||||||||+..|.=++-
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 4445666764 57999999999999999999988775
No 470
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.41 E-value=1.8e-07 Score=90.07 Aligned_cols=63 Identities=17% Similarity=0.223 Sum_probs=54.1
Q ss_pred CeEEEccceeEcc-ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCC
Q 021380 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 76 ~~l~v~~ls~~y~-~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~ 146 (313)
+.++.+.++..|. +.. +++++ |.+.+|++++|+|+||+|||||+++|+++.. ++.|.+.+.|.
T Consensus 128 ~~~~r~~v~~~l~tGi~----aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~---~d~~vi~~iGe 191 (433)
T PRK07594 128 PAMVRQPITQPLMTGIR----AIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD---ADSNVLVLIGE 191 (433)
T ss_pred CceeccCHhheeCCCce----eeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCC---CCEEEEEEECC
Confidence 3577888888884 334 99999 9999999999999999999999999999998 88887766554
No 471
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.38 E-value=2.6e-07 Score=89.49 Aligned_cols=47 Identities=23% Similarity=0.213 Sum_probs=43.7
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCC
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~ 146 (313)
+++++ |.+.+|++++|+|+||+|||||+++|+|+.+ ++.|.|.+.|+
T Consensus 148 vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~---~~~gvI~~~Ge 194 (438)
T PRK07721 148 AIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS---ADLNVIALIGE 194 (438)
T ss_pred hhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC---CCeEEEEEEec
Confidence 89999 9999999999999999999999999999998 99998877543
No 472
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.34 E-value=3.5e-07 Score=85.16 Aligned_cols=46 Identities=22% Similarity=0.203 Sum_probs=42.0
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCC
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~ 145 (313)
+++++ |.+.+|++++|+|+||+|||||+++|+|... ++.|.+..-|
T Consensus 59 aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~~vi~~iG 104 (326)
T cd01136 59 AIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTT---ADVNVIALIG 104 (326)
T ss_pred EEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEe
Confidence 89999 9999999999999999999999999999998 8887765544
No 473
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.34 E-value=8.1e-07 Score=84.38 Aligned_cols=53 Identities=21% Similarity=0.262 Sum_probs=47.4
Q ss_pred eEEEccceeEcccccccccccc-----------ccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 77 VVEARCMDEVYDALAQRLLPTS-----------ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~-----------~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
-+.++||++.|.+.. .+|+ |+++.|.+|+.++|+||.|+|||||++.|+..+.
T Consensus 130 ri~Fe~LTf~YP~er---~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 130 RVLFENLTPLYPNER---LRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CeEEEEeeecCCCcc---ceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 589999999997532 2786 9999999999999999999999999999999875
No 474
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.32 E-value=1.2e-06 Score=89.47 Aligned_cols=87 Identities=23% Similarity=0.291 Sum_probs=59.5
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHH
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~ 175 (313)
+++++++.+.+|++++|+||||+||||++..|++.+. ...| .+.++++..|.+- ....+.+..
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~---~~~G---------~kkV~lit~Dt~R-----igA~eQL~~ 236 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCV---AREG---------ADQLALLTTDSFR-----IGALEQLRI 236 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHH---HHcC---------CCeEEEecCcccc-----hHHHHHHHH
Confidence 6778888888999999999999999999999999885 3333 1346777777431 234556666
Q ss_pred HHHhcCCCCC--ccHHHHHHHHHHhh
Q 021380 176 AHARRGAPWT--FNPLLLLNCLKNLR 199 (313)
Q Consensus 176 ~~~~~~~~~~--~~~~~~~~~l~~l~ 199 (313)
.....+.+.. .+...+.+.++.+.
T Consensus 237 ~a~~~gvpv~~~~~~~~l~~al~~~~ 262 (767)
T PRK14723 237 YGRILGVPVHAVKDAADLRFALAALG 262 (767)
T ss_pred HHHhCCCCccccCCHHHHHHHHHHhc
Confidence 6666555432 23444555565554
No 475
>PRK08149 ATP synthase SpaL; Validated
Probab=98.30 E-value=5.2e-07 Score=86.79 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=43.3
Q ss_pred ccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC---ceeeeCCCC
Q 021380 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---ASSFDSQVK 147 (313)
Q Consensus 95 ~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~---G~i~~~~~~ 147 (313)
.+++++ |.+.+|++++|+|+||+|||||+++|+++.. ++. |.|-..+.+
T Consensus 140 ~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~---~dv~v~g~Ig~rg~e 191 (428)
T PRK08149 140 RAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSE---ADVFVIGLIGERGRE 191 (428)
T ss_pred EEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCC---CCeEEEEEEeeCCcc
Confidence 389999 9999999999999999999999999999887 776 777666654
No 476
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.27 E-value=9.6e-07 Score=75.42 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=25.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+|++++|+|+||||||||+++|+|++.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 589999999999999999999999986
No 477
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.26 E-value=7.6e-07 Score=86.05 Aligned_cols=49 Identities=20% Similarity=0.173 Sum_probs=44.4
Q ss_pred cccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCC
Q 021380 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 94 ~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~ 146 (313)
+.+++++ |.+.+|++++|+|+||+|||||+++|++... ++.|.+...|+
T Consensus 151 i~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~---~d~~vi~~iGe 199 (441)
T PRK09099 151 VRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQ---CDVNVIALIGE 199 (441)
T ss_pred ceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCC---CCeEEEEEEcc
Confidence 3489999 9999999999999999999999999999998 88888876664
No 478
>PRK05922 type III secretion system ATPase; Validated
Probab=98.24 E-value=3.7e-07 Score=87.85 Aligned_cols=48 Identities=17% Similarity=0.235 Sum_probs=41.8
Q ss_pred cccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCC
Q 021380 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145 (313)
Q Consensus 94 ~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~ 145 (313)
+++++.+ |.+.+|++++|+|+||+|||||+++|++..+ ++.|.+..-|
T Consensus 145 Ir~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~---~d~gvi~liG 192 (434)
T PRK05922 145 IKAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSK---STINVIALIG 192 (434)
T ss_pred ceeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCC---CCceEEEEeC
Confidence 3478776 9999999999999999999999999999988 8888875433
No 479
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.23 E-value=1.1e-05 Score=65.89 Aligned_cols=61 Identities=18% Similarity=0.175 Sum_probs=42.0
Q ss_pred hcCeEEEEcChHHHHHHHHhhhhcc--CChhHHHHHHHHhcCCchHH-HHHhhc-CCCCEEeccC
Q 021380 251 FDEKWFIEVDLDTAMQRVLKRHIST--GKPPDVAKWRIEYNDRPNAE-LIMKSK-KNADLVIKSI 311 (313)
Q Consensus 251 ~~~~i~vtHd~~~~~~rvigr~v~~--G~~~e~~~~~~~~~~~~~~~-~i~~~~-~~aD~i~~~~ 311 (313)
.+..|+++-+++....|+..|.... |.+.+-+.+.+...+.+... |+.+.+ ...|++|++.
T Consensus 83 ~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dl~i~~~ 147 (147)
T cd02020 83 ADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYVAPLKLAEDAIVIDTS 147 (147)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcccccccCCCCcEEEeCc
Confidence 4456899999999888888766543 44556666666666666644 777775 4457998763
No 480
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=98.23 E-value=2.3e-05 Score=67.24 Aligned_cols=176 Identities=20% Similarity=0.247 Sum_probs=103.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHH--------HHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA--------HAR 179 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~--------~~~ 179 (313)
-++|+-||.|||||||.-.|--.+...|. | ...+++++.|+|++ |-.+.+.+. ...
T Consensus 32 l~igfSgPQGsGKstl~~ald~~lt~Ky~--~---------E~s~~~~SvDDFYL-----The~Q~eL~k~npnN~Llq~ 95 (282)
T KOG2878|consen 32 LVIGFSGPQGSGKSTLVFALDYKLTKKYI--Q---------EYSSATISVDDFYL-----THEGQAELRKKNPNNALLQY 95 (282)
T ss_pred EEEEecCCCCCCceeehhhhHHHHHHHhc--c---------ccceEEEEecceee-----echhHHHHHhhCCCChhhcc
Confidence 48999999999999998887665531110 1 11478888887754 333433332 234
Q ss_pred cCCCCCccHHHHHHHHHHhhc----CCCccCCCCC----ccCCCcchhhhhc-ccCccEEEEcCcccccCh---------
Q 021380 180 RGAPWTFNPLLLLNCLKNLRN----QGSVYAPSFD----HGVGDPVEDDILV-GLQHKVVIVDGNYLFLDG--------- 241 (313)
Q Consensus 180 ~~~~~~~~~~~~~~~l~~l~~----~~~~~~~~LS----gGekqRv~la~al-~~~a~~li~d~~~llLDE--------- 241 (313)
+|.+...+.....++|+.+-. .....+|.|. +|.-.|.--.... +.+..++++++.++.+.+
T Consensus 96 RGlaGtHD~kll~evLna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF~Pl~~~~v~a~ 175 (282)
T KOG2878|consen 96 RGLAGTHDLKLLVEVLNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGFKPLPADVVKAV 175 (282)
T ss_pred CCCCCcccHHHHHHHHHHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEecccccccccchhheecc
Confidence 567778888888888887652 2224445332 3444443332222 124788999999998876
Q ss_pred -----------hhH----HHHHHhhcC-eEEEEcChHHHHHHHH------hhhhccCChhHHHHHHHHhcCCchHHHHHh
Q 021380 242 -----------GVW----KDVSSMFDE-KWFIEVDLDTAMQRVL------KRHISTGKPPDVAKWRIEYNDRPNAELIMK 299 (313)
Q Consensus 242 -----------~~~----~~l~~l~~~-~i~vtHd~~~~~~rvi------gr~v~~G~~~e~~~~~~~~~~~~~~~~i~~ 299 (313)
.-+ ..+.+.++. +++-+.|++-+-++.+ ...+..|-.+|.+.. +-.++.|.+.+.+|
T Consensus 176 d~l~Gdl~~VN~kL~~Y~d~~~k~Idslvv~~~q~inyVYrWRLQqEhal~~~~~kGMsDEeV~~-FV~rYmP~Yk~YL~ 254 (282)
T KOG2878|consen 176 DPLQGDLEVVNKKLEAYYDAWDKYIDSLVVIKIQDINYVYRWRLQQEHALRQDGQKGMSDEEVND-FVSRYMPAYKAYLP 254 (282)
T ss_pred CcccccHHHHhhHHHHHHHHHHHhhhhEEEEEecCccHhhhhhHHHHHHHHHhhccCCCHHHHHH-HHHhhhhHHHhhhh
Confidence 001 111111222 3477788888877333 344556766665544 44567788775555
Q ss_pred h
Q 021380 300 S 300 (313)
Q Consensus 300 ~ 300 (313)
+
T Consensus 255 t 255 (282)
T KOG2878|consen 255 T 255 (282)
T ss_pred h
Confidence 3
No 481
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.23 E-value=8.3e-07 Score=85.71 Aligned_cols=47 Identities=19% Similarity=0.167 Sum_probs=43.0
Q ss_pred ccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCC
Q 021380 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145 (313)
Q Consensus 95 ~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~ 145 (313)
.+++++ |.+.+|++++|+|+||+|||||+++|++... ++.|.+...|
T Consensus 134 ~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~---~~~~vi~~iG 180 (422)
T TIGR02546 134 RAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGAS---ADVNVIALIG 180 (422)
T ss_pred eeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEc
Confidence 389999 9999999999999999999999999999998 9988876643
No 482
>PRK01889 GTPase RsgA; Reviewed
Probab=98.20 E-value=1.6e-06 Score=82.12 Aligned_cols=61 Identities=25% Similarity=0.309 Sum_probs=48.8
Q ss_pred ccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC-----CCCeEEEEeccCC
Q 021380 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----PPDVATVLPMDGF 160 (313)
Q Consensus 97 L~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~-----~~~~i~~v~q~~~ 160 (313)
++.+...+.+|++++|+|+||+|||||++.|+|... +..|+|.+++.. ....+.+++++.+
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~---~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~ 250 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV---QKTGAVREDDSKGRHTTTHRELHPLPSGGL 250 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc---cceeeEEECCCCCcchhhhccEEEecCCCe
Confidence 344556678999999999999999999999999998 999999876532 2234677777754
No 483
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.19 E-value=1.1e-06 Score=85.29 Aligned_cols=47 Identities=21% Similarity=0.205 Sum_probs=41.9
Q ss_pred ccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCC
Q 021380 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145 (313)
Q Consensus 95 ~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~ 145 (313)
.+++++ |.+.+|++++|+|+||+|||||+++|++... ++.|.+...|
T Consensus 152 ~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~---~~~~vi~~iG 198 (440)
T TIGR01026 152 RSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE---ADVNVIALIG 198 (440)
T ss_pred eeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC---CCEEEEEEEe
Confidence 389999 9999999999999999999999999999998 8887665443
No 484
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.17 E-value=1.8e-06 Score=75.10 Aligned_cols=28 Identities=39% Similarity=0.582 Sum_probs=26.1
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++|++++|+||+|||||||++.|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999873
No 485
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.16 E-value=1.6e-06 Score=83.35 Aligned_cols=48 Identities=21% Similarity=0.183 Sum_probs=43.5
Q ss_pred ccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCC
Q 021380 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 95 ~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~ 146 (313)
.+++++ |.+.+|++++|+|+||+|||||+++|++..+ ++.|.+...|+
T Consensus 126 ~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~---~~~gvi~~~Ge 173 (413)
T TIGR03497 126 KAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAK---ADINVIALIGE 173 (413)
T ss_pred eeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCeEEEEEEcc
Confidence 389999 9999999999999999999999999999998 88888766554
No 486
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.16 E-value=9.2e-06 Score=69.90 Aligned_cols=58 Identities=19% Similarity=0.266 Sum_probs=35.9
Q ss_pred HHHhhcCeEEEEcChHHHHHHHHhhhhccCChhHHHHHHHHhcCCchHHHHHhhcCCCCEEeccCC
Q 021380 247 VSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSID 312 (313)
Q Consensus 247 l~~l~~~~i~vtHd~~~~~~rvigr~v~~G~~~e~~~~~~~~~~~~~~~~i~~~~~~aD~i~~~~~ 312 (313)
+...++.+++++.+.+....|++.|. |.+.+.+..++... .+ ....+..||++|+|..
T Consensus 120 ~~~~~D~vv~V~~~~~~~~~Rl~~R~---~~s~~~~~~r~~~q-~~----~~~~~~~ad~vI~N~~ 177 (188)
T TIGR00152 120 LRSLCDRVIVVDVSPQLQLERLMQRD---NLTEEEVQKRLASQ-MD----IEERLARADDVIDNSA 177 (188)
T ss_pred cHHhCCEEEEEECCHHHHHHHHHHcC---CCCHHHHHHHHHhc-CC----HHHHHHhCCEEEECCC
Confidence 44556667778888777777776544 55555555544432 11 2345677999998763
No 487
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.16 E-value=1.3e-06 Score=75.06 Aligned_cols=26 Identities=35% Similarity=0.616 Sum_probs=24.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
|++++|+||||||||||+++|++.+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 78999999999999999999999875
No 488
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.14 E-value=2.2e-06 Score=82.65 Aligned_cols=63 Identities=14% Similarity=0.238 Sum_probs=51.7
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCC
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~ 146 (313)
.++.+.+++.|... +.+++.+ |.+.+|++++|+|+||+|||||+++|++..+ ++.|.|...|+
T Consensus 130 ~~~r~~i~~~l~TG---iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~gvI~~iGe 192 (432)
T PRK06793 130 AFEREEITDVFETG---IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK---ADINVISLVGE 192 (432)
T ss_pred chheechhhccCCC---CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCC---CCeEEEEeCCC
Confidence 46677788777532 2378875 9999999999999999999999999999998 88887765543
No 489
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.13 E-value=4.2e-06 Score=79.40 Aligned_cols=71 Identities=20% Similarity=0.288 Sum_probs=52.0
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHH
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~ 175 (313)
++++.++.+.+|.+++|+||||+||||++..|++.+. ...| ...++++..|.+. ....|.+..
T Consensus 126 ~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~---~~~G---------~~~V~lit~D~~R-----~ga~EqL~~ 188 (374)
T PRK14722 126 VLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCV---MRFG---------ASKVALLTTDSYR-----IGGHEQLRI 188 (374)
T ss_pred hhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHH---HhcC---------CCeEEEEeccccc-----ccHHHHHHH
Confidence 6777888899999999999999999999999998763 1112 1347788877541 245566666
Q ss_pred HHHhcCCC
Q 021380 176 AHARRGAP 183 (313)
Q Consensus 176 ~~~~~~~~ 183 (313)
+....+.+
T Consensus 189 ~a~~~gv~ 196 (374)
T PRK14722 189 FGKILGVP 196 (374)
T ss_pred HHHHcCCc
Confidence 66666654
No 490
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.12 E-value=3e-06 Score=79.00 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=34.5
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~ 147 (313)
.+|++++|+||||+||||++..|++.+. +..|+|.+-+.+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~---~~g~~V~Li~~D 151 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK---AQGKKVLLAAGD 151 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCeEEEEecC
Confidence 5799999999999999999999999998 777777664433
No 491
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.12 E-value=1.6e-06 Score=83.40 Aligned_cols=62 Identities=16% Similarity=0.088 Sum_probs=48.2
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCC
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~ 146 (313)
++-..++.-+... +.+++ .+|.+.+|++++|+|+||+|||||+++|+++.+ |+.|.|.+.|.
T Consensus 115 ~~R~~i~~~l~tG---i~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi~~iGe 176 (418)
T TIGR03498 115 MSRARVGEPLDTG---VRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTD---ADVVVIALVGE 176 (418)
T ss_pred hhccCcccccCCc---cEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEee
Confidence 3334444444322 22665 699999999999999999999999999999998 99998776554
No 492
>PRK08118 topology modulation protein; Reviewed
Probab=98.11 E-value=9.1e-05 Score=62.66 Aligned_cols=24 Identities=42% Similarity=0.598 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+.|+||+|||||||.+.|+..+.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998875
No 493
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.10 E-value=3e-06 Score=81.52 Aligned_cols=63 Identities=21% Similarity=0.150 Sum_probs=50.0
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCC
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~ 146 (313)
.++-..++..|... +.+++.+ |.+.+|++++|+|+||+|||||+++|++..+ ++.+.+...|.
T Consensus 111 ~~~R~~~~~~~~tG---i~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~---~~~~vi~~iGe 173 (411)
T TIGR03496 111 PLKRAPIDEPLDVG---VRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTE---ADVVVVGLIGE 173 (411)
T ss_pred HHhccCcceEeeee---EEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCC---CCEEEEEEEec
Confidence 45556677777522 2389888 9999999999999999999999999999998 88776654443
No 494
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.09 E-value=2e-06 Score=83.05 Aligned_cols=50 Identities=22% Similarity=0.202 Sum_probs=42.0
Q ss_pred cccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC---ceeeeCCCC
Q 021380 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---ASSFDSQVK 147 (313)
Q Consensus 94 ~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~---G~i~~~~~~ 147 (313)
+++++.+ |.+.+|++++|+|+||+|||||+++|+++.+ ++. |.|.+.+.+
T Consensus 163 iraID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~---~d~iv~g~Igerg~e 215 (455)
T PRK07960 163 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQ---ADVIVVGLIGERGRE 215 (455)
T ss_pred ceeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCC---CCEEEEEEEEECCeE
Confidence 3367655 9999999999999999999999999999987 775 777666643
No 495
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.08 E-value=1.1e-05 Score=87.40 Aligned_cols=44 Identities=27% Similarity=0.465 Sum_probs=35.4
Q ss_pred cceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCC
Q 021380 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145 (313)
Q Consensus 100 is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~ 145 (313)
+++....+.++||+|++|+|||||++.+.+.+.. ...|.+++++
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~--~F~g~vfv~~ 243 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR--QFQSSVFIDR 243 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhh--cCCeEEEeec
Confidence 4677889999999999999999999999777652 4467766643
No 496
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.08 E-value=2.6e-06 Score=86.11 Aligned_cols=84 Identities=15% Similarity=0.170 Sum_probs=65.2
Q ss_pred CCCccCCCCCccCCCcchhhhhcccC--ccEEEEcCcccccCh-------hhHHHHHHhhcCeEEEEcChHHHHH--HHH
Q 021380 201 QGSVYAPSFDHGVGDPVEDDILVGLQ--HKVVIVDGNYLFLDG-------GVWKDVSSMFDEKWFIEVDLDTAMQ--RVL 269 (313)
Q Consensus 201 ~~~~~~~~LSgGekqRv~la~al~~~--a~~li~d~~~llLDE-------~~~~~l~~l~~~~i~vtHd~~~~~~--rvi 269 (313)
..++...+|||||.||+.||..+-.. .=+.++|+|-+.|-+ .+++.|+++-+.+|+|.||.+.+.. +++
T Consensus 474 tL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iI 553 (935)
T COG0178 474 TLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHII 553 (935)
T ss_pred cccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEE
Confidence 45778889999999999998887432 234578999888887 3444555554557899999999887 666
Q ss_pred ----------hhhhccCChhHHHHH
Q 021380 270 ----------KRHISTGKPPDVAKW 284 (313)
Q Consensus 270 ----------gr~v~~G~~~e~~~~ 284 (313)
|++++.|+++++...
T Consensus 554 DiGPgAG~~GGeIv~~Gtp~~i~~~ 578 (935)
T COG0178 554 DIGPGAGEHGGEIVAEGTPEELLAN 578 (935)
T ss_pred eeCCCCCcCCCEEEEccCHHHHHhC
Confidence 799999999998764
No 497
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=98.07 E-value=2.4e-06 Score=82.62 Aligned_cols=38 Identities=26% Similarity=0.319 Sum_probs=35.8
Q ss_pred cccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 94 ~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.+++++ |.+.+|++++|+|+||+|||||+++|+|+..
T Consensus 156 i~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~ 193 (451)
T PRK05688 156 IRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTE 193 (451)
T ss_pred eeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4489999 9999999999999999999999999999876
No 498
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.07 E-value=4.4e-05 Score=66.38 Aligned_cols=24 Identities=46% Similarity=0.708 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++.|+||+||||||+++.|++.+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 689999999999999999999885
No 499
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=98.06 E-value=3.3e-06 Score=81.41 Aligned_cols=47 Identities=19% Similarity=0.143 Sum_probs=42.1
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCC
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~ 146 (313)
+++++ +.+.+|++++|+|+||+|||||+++|++... ++.+.|...|.
T Consensus 147 aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~---~~v~vi~~iGe 193 (434)
T PRK08472 147 SIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCL---APIKVVALIGE 193 (434)
T ss_pred Hhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccC---CCEEEEEeeCc
Confidence 89999 9999999999999999999999999999887 77777765554
No 500
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=98.06 E-value=2.6e-06 Score=82.01 Aligned_cols=38 Identities=26% Similarity=0.335 Sum_probs=34.6
Q ss_pred cccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 94 ~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.+++.+ |.+.+|++++|+|+||+|||||+++|++...
T Consensus 150 i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~ 187 (444)
T PRK08972 150 VRAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTT 187 (444)
T ss_pred ceeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCC
Confidence 3478777 9999999999999999999999999999775
Done!